Citrus Sinensis ID: 046036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610----
Protein Sequence
GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPRRPSLRSSLGEEFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVRINGERRIRKNATN
Secondary Structure (PSIPRED)
ccccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccccccEEEEEccEEEEcccccccccccccEEEcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHccccccccccccccccccccccccEEEccccccccccHHHHHHHHHEEEEEEEEEEEEcccccccccccccccccccHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccHHccccEEEEccccccccccEEEEEcccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccHcHHHHcEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEcccccEEEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccccHccccccEEEEccccccccccccccccccccHEEEccccccccccccccEEEccccccHEEEEEEEcccccccccccHHHHHHHHHcccHccHHEEEccccccccccccEEEEEEEcccccHHHHHcccccccEccHHHHEEEEEccccHEEccccccHEHHHHcHHHHccccccccccccccccccEEEccHHHcccccccccccHHHHHHHHHHHHccccccccHccccccHHHHHHHHcccccHHEccHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
GNVPQEIGNLfrlqnlnfgnstvqgeipshlsptsklTYLSLFsnnlhgiippsldsftnlSTKLRILDaggnqfagdipagipKYFNLIQLgldrnclagsipfsigklqnlqklnplATSLYSFQLNLAennltgnipesleNLTSLQILNLSCnhlggsipkpsglfstLSSIDFAhnnfngslplevgslsntqeldfsehmlsdeipitlgnrskfEHLLlggnmfqgrippffgsfkgtidlnlshnnlsgtipkeletlpflenlnlsfnnfegqlpsmsvftnTSVISIVgngklcggvpelRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVgvfqkrkprrpslrsslgeeflripydellratdgssmdsggndFKALAFefmpngsleswlhpneatRRLDLAEGLKiavdipsnvlldydmtayvgdfglarflptnvtnpmkgqsnsaAVWGSIGYNMEWVARyqhkgkgysCGILLLEimtgkrptdemFADCLSLHnfcemalpeSVMELVYSRLLqgvdkdaedepcmKAKIRECLTSLGrigiasltetpnermGVREMVMEMNVIKEVLLGVringerrirknatn
Flexible Loop (DISEMBL)
GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGvfqkrkprrpslrsslgeeflriPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECltslgrigiasltetpnermgVREMVMEMNVIKEVllgvringerrirknatn
Low Complexity Region (SEG)
GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETlpflenlnlsfnnfEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQkrkprrpslrsslGEEFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPnermgvremvmemnvIKEVLLGVRINGERRIRKNATN
Disordered region (IsUnstruct)
********NLFRLQNLNFGNSTVQGEI***L*PTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSL*****LDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQ****************FLRIPYDELL**************FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVRING**********
Disordered Region (DISOPRED)
GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPEL******************TKIYSYNSLWGCLFDILIMLSVGVFQKRKPRRPSLRSSLGEEFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPT***********SAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQG***********KAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV******************
Disordered Region (DISEMBL)
GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPRRPSLRSSLGEEFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVRINGERRIRKNATN
Disordered Region (DISPRO)
GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPRRPSLRSSLGEEFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPTNVTN*MKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPRRPSLRSSLGEEFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVRINGERRIRKNATN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	614	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	no	no	0.931	0.554	0.283	5e-49
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.959	0.601	0.261	1e-46
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.633	0.385	0.362	2e-45
C0LGW6	966	LRR receptor-like serine/	no	no	0.809	0.514	0.295	4e-45
O49318	1124	Probable leucine-rich rep	no	no	0.480	0.262	0.352	1e-40
Q6XAT2	967	LRR receptor-like serine/	no	no	0.785	0.498	0.281	6e-40
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.473	0.264	0.359	1e-39
C0LGX3	993	LRR receptor-like serine/	no	no	0.838	0.518	0.268	4e-39
Q9LHP4	1141	Receptor-like protein kin	no	no	0.534	0.287	0.353	8e-39
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.542	0.279	0.329	3e-38

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  196 bits (498), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 210/740 (28%), Positives = 309/740 (41%), Gaps = 168/740 (22%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIP------------------------------SH 30
           G +P+ + N+  L+  +  ++ + G IP                                
Sbjct: 280 GAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGA 339

Query: 31  LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLI 90
           ++  ++L YL +  N L G +P S+    NLST L  L  G N  +G IP  I    +L 
Sbjct: 340 VANCTQLEYLDVGYNRLGGELPASI---ANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQ 396

Query: 91  QLGLDRNCLAGSIPFSIGKLQNLQKL----NPLATSLYSF--------QLNLAENNLTGN 138
           +L L+ N L+G +P S GKL NLQ +    N ++  + S+        +L+L  N+  G 
Sbjct: 397 ELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGR 456

Query: 139 IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQ 198
           IP+SL     L  L +  N L G+IP+      +L+ ID ++N   G  P EVG L    
Sbjct: 457 IPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLV 516

Query: 199 ELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG-----------------------RI 235
            L  S + LS ++P  +G     E L + GN F G                       RI
Sbjct: 517 GLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPDISRLVSLKNVDFSNNNLSGRI 576

Query: 236 PPFFGSFKGTIDLNLSHNNLSGTIP-----KELETLPFLENLNLSFNNFEGQLPSMSVFT 290
           P +  S     +LNLS N   G +P     +    +    N N+     E QL    V  
Sbjct: 577 PRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQA 636

Query: 291 N------TSVISIVGNGKLCGGVPELRLLS-----CAIESSKK----------------- 322
           +       SV   V +G +C G+  L L+      C     KK                 
Sbjct: 637 SPRKRKPLSVRKKVVSG-ICIGIASLLLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGM 695

Query: 323 --------QIHHLGTKIYSYNSL----WGCLFDILI-----MLSVGVFQKRKPRRPSLRS 365
                   ++H   ++  S N +    +G +F  L+     +++V V    K        
Sbjct: 696 FHEKVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFM 755

Query: 366 SLGEEFLRIPYDELLR-ATDGSSMDSGGNDFKALAFEFMPNGSLESWLH------PNEAT 418
           +  E F  I +  L++  T  SS+DS GNDF+AL +EFMP GSL+ WL        N+ +
Sbjct: 756 AECETFKGIRHRNLVKLITVCSSLDSEGNDFRALVYEFMPKGSLDMWLQLEDLERVNDHS 815

Query: 419 RRLDLAEGLKIAVDI---------------------PSNVLLDYDMTAYVGDFGLARFLP 457
           R L  AE L IA+D+                     PSN+LLD D+TA+V DFGLA+ L 
Sbjct: 816 RSLTPAEKLNIAIDVASALEYLHVHCHDPVAHCDIKPSNILLDDDLTAHVSDFGLAQLLY 875

Query: 458 TNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQH--KGKGYSCGILLLEIMTGKRPTDEMF 514
                    Q +SA V G+IGY   E+    Q   +G  YS GILLLE+ +GK+PTDE F
Sbjct: 876 KYDRESFLNQFSSAGVRGTIGYAAPEYGMGGQPSIQGDVYSFGILLLEMFSGKKPTDESF 935

Query: 515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLT 574
           A   +LH++ +              +L G              I E L  + ++GI    
Sbjct: 936 AGDYNLHSYTK-------------SILSGCTSSGGSNA-----IDEGLRLVLQVGIKCSE 977

Query: 575 ETPNERMGVREMVMEMNVIK 594
           E P +RM   E V E+  I+
Sbjct: 978 EYPRDRMRTDEAVRELISIR 997

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 201/768 (26%), Positives = 321/768 (41%), Gaps = 179/768 (23%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHL---SPTSKLTYLS---LFSNNLHGIIPPS 54
           G VP  + N   L+ ++  ++ + GE+PS +    P  +  YLS     S+N +  + P 
Sbjct: 205 GTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPF 264

Query: 55  LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY-FNLIQLGLDRNCLAGSIPFSIGKL--- 110
             S  N S+ L+ L+  GN   G+I + +     NL+Q+ LD+N + GSIP  I  L   
Sbjct: 265 FASLAN-SSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNLLNL 323

Query: 111 ---------------QNLQKLNPLATSLYSFQ------------------LNLAENNLTG 137
                          + L KL+ L     S                    L+++ NNL+G
Sbjct: 324 TLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSG 383

Query: 138 NIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS----------- 186
           +IP+S  NL+ L+ L L  NHL G++P+  G    L  +D +HNN  G+           
Sbjct: 384 SIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRN 443

Query: 187 ---------------LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMF 231
                          +PLE+  +     +D S + LS +IP  LG+    EHL L  N F
Sbjct: 444 LKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGF 503

Query: 232 QGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
              +P   G      +L++S N L+G IP   +    L++LN SFN   G +     F+ 
Sbjct: 504 SSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSK 563

Query: 292 TSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWG----CLFDI-LI 346
            ++ S +G+  LCG +         +++ KK+  +    +    SL      C+F   L+
Sbjct: 564 LTIESFLGDSLLCGSIK-------GMQACKKKHKYPSVLLPVLLSLIATPVLCVFGYPLV 616

Query: 347 MLS-----VGVFQKRKPRRPSLRSSLGEEFLRIPYDELLRATDG----SSMDSG--GNDF 395
             S     + V+ K +      ++    ++ RI Y +L+ AT G    S + SG  G+ +
Sbjct: 617 QRSRFGKNLTVYAKEEVEDEEKQNQNDPKYPRISYQQLIAATGGFNASSLIGSGRFGHVY 676

Query: 396 KAL----------------AFEF------------------------------------- 402
           K +                A EF                                     
Sbjct: 677 KGVLRNNTKVAVKVLDPKTALEFSGSFKRECQILKRTRHRNLIRIITTCSKPGFNALVLP 736

Query: 403 -MPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI---------------------PSNVLL 439
            MPNGSLE  L+P E +++ LDL + + I  D+                     PSN+LL
Sbjct: 737 LMPNGSLERHLYPGEYSSKNLDLIQLVNICSDVAEGIAYLHHYSPVKVVHCDLKPSNILL 796

Query: 440 DYDMTAYVGDFGLARFL-----PTNVTNPMKGQSNSAAVWGSIGY---NMEWVARYQHKG 491
           D +MTA V DFG++R +       +  + +   S    + GS+GY         R    G
Sbjct: 797 DDEMTALVTDFGISRLVQGVEETVSTDDSVSFGSTDGLLCGSVGYIAPEYGMGKRASTHG 856

Query: 492 KGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDE 551
             YS G+LLLEI++G+RPTD +  +  SLH F +   P+S +E +  + L       + E
Sbjct: 857 DVYSFGVLLLEIVSGRRPTDVLVNEGSSLHEFMKSHYPDS-LEGIIEQALSRWKPQGKPE 915

Query: 552 PCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG 599
            C K   RE +  +  +G+      P+ R  + ++  EM  +KE L  
Sbjct: 916 KCEKL-WREVILEMIELGLVCTQYNPSTRPDMLDVAHEMGRLKEYLFA 962

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 155/427 (36%), Positives = 217/427 (50%), Gaps = 38/427 (8%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           GNVP  +  LF   N    +S+   E  + L+  ++L  L +  N L G +P S+    N
Sbjct: 303 GNVPN-LKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISI---AN 358

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL---- 116
           LS KL  LD GG   +G IP  I    NL +L LD+N L+G +P S+GKL NL+ L    
Sbjct: 359 LSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFS 418

Query: 117 NPLATSLYSF--------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG 168
           N L+  + +F         L+L+ N   G +P SL N + L  L +  N L G+IP    
Sbjct: 419 NRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIM 478

Query: 169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG 228
               L  +D + N+  GSLP ++G+L N   L   ++ LS ++P TLGN    E L L G
Sbjct: 479 KIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEG 538

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSV 288
           N+F G IP   G   G  +++LS+N+LSG+IP+   +   LE LNLSFNN EG++P   +
Sbjct: 539 NLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGI 597

Query: 289 FTNTSVISIVGNGKLCGGVPELRLLSC---AIESSKKQIHHLGTKIYSYNSLWGCLFDIL 345
           F N + +SIVGN  LCGG+   +L  C   A    KK    L  K+    S+   L  +L
Sbjct: 598 FENATTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSSRL-KKVVIGVSVGITLLLLL 656

Query: 346 IMLSVGVFQKRKPRR--------PSLRSSLGEEFLRIPYDELLRATDGSSMD------SG 391
            M SV +   RK ++        PS    L E   +I Y +L  AT+G S        S 
Sbjct: 657 FMASVTLIWLRKRKKNKETNNPTPSTLEVLHE---KISYGDLRNATNGFSSSNMVGSGSF 713

Query: 392 GNDFKAL 398
           G  +KAL
Sbjct: 714 GTVYKAL 720

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  183 bits (464), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 181/612 (29%), Positives = 271/612 (44%), Gaps = 115/612 (18%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +P  IG   ++  L+   + + G IP  +     L  L L  N L G IPP L + + 
Sbjct: 253 GEIPYNIG-FLQVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLS- 310

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN--- 117
            + KL +    GN   G IP+ +     L  L L+ N L G+IP  +GKL+ L +LN   
Sbjct: 311 FTGKLYL---HGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLAN 367

Query: 118 -----PLATSLYSF----QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG 168
                P+ +++ S     Q N+  N L+G+IP +  NL SL  LNLS N+  G IP   G
Sbjct: 368 NRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELG 427

Query: 169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG 228
               L  +D + NNF+GS+PL +G L +   L+ S + LS ++P   GN    + + +  
Sbjct: 428 HIINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQMIDVSF 487

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSV 288
           N+  G IP   G  +    L L++N L G IP +L     L NLN+SFNN  G +P M  
Sbjct: 488 NLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMKN 547

Query: 289 FTNTSVISIVGN--------GKLCGGVPELRLLS---------------CAI-------- 317
           F+  +  S VGN        G +CG +P+ R+ S               C I        
Sbjct: 548 FSRFAPASFVGNPYLCGNWVGSICGPLPKSRVFSRGALICIVLGVITLLCMIFLAVYKSM 607

Query: 318 ------ESSKKQ--------IHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPRRPSL 363
                 + S KQ        I H+   I++++ +     ++     +G        + +L
Sbjct: 608 QQKKILQGSSKQAEGLTKLVILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTVYKCAL 667

Query: 364 RSSLGEEFLRI--PYDELLR------------------ATDGSSMDSGGNDFKALAFEFM 403
           +SS      R+   Y   LR                  +  G ++   GN    L +++M
Sbjct: 668 KSSRPIAIKRLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPTGN---LLFYDYM 724

Query: 404 PNGSLESWLHPNEATRRLDLAEGLKIAV--------------------DIP-SNVLLDYD 442
            NGSL   LH +    +LD    LKIAV                    DI  SN+LLD +
Sbjct: 725 ENGSLWDLLHGSLKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDEN 784

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY---NMEWVARYQHKGKGYSCGIL 499
             A++ DFG+A+ +P + T+       S  V G+IGY        +R   K   YS GI+
Sbjct: 785 FEAHLSDFGIAKSIPASKTHA------STYVLGTIGYIDPEYARTSRINEKSDIYSFGIV 838

Query: 500 LLEIMTGKRPTD 511
           LLE++TGK+  D
Sbjct: 839 LLELLTGKKAVD 850

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 168/340 (49%), Gaps = 45/340 (13%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +PQ +G    L  ++F  + + G+IP  +   S L  L+L SN + G IPP +    +
Sbjct: 411 GVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKS 470

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
           L  +LR++   GN+  G  P  + K  NL  + LD+N  +G +P  IG  Q LQ+L+   
Sbjct: 471 L-LQLRVV---GNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLH--- 523

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
                    LA N  + N+P  +  L++L   N+S N L G IP        L  +D + 
Sbjct: 524 ---------LAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSR 574

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
           N+F GSLP E+GSL   + L  SE+  S  IP T+GN +    L +GGN+F G IPP  G
Sbjct: 575 NSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLG 634

Query: 241 SFKG-TIDLNLSHNNLSGTIPKELETLPFL------------------ENL------NLS 275
                 I +NLS+N+ SG IP E+  L  L                  ENL      N S
Sbjct: 635 LLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFS 694

Query: 276 FNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSC 315
           +NN  GQLP   +F N ++ S +GN  LCGG     L SC
Sbjct: 695 YNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG----HLRSC 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  166 bits (419), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 177/628 (28%), Positives = 262/628 (41%), Gaps = 146/628 (23%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +P  IG   ++  L+   + + G IP  +     L  L L  N L G IPP L + + 
Sbjct: 255 GVIPYNIG-FLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILGNLS- 312

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
            + KL +    GN+  G IP  +     L  L L+ N L G IP  +GKL+ L       
Sbjct: 313 FTGKLYL---HGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQL------- 362

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
                F+LNLA NNL G IP ++ +  +L   N+  N L G++P       +L+ ++ + 
Sbjct: 363 -----FELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSS 417

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLL---LGGNMFQGRIPP 237
           N+F G +P E+G + N   LD S +  S  IP+TLG+    EHLL   L  N   G +P 
Sbjct: 418 NSFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGD---LEHLLILNLSRNHLNGTLPA 474

Query: 238 FFGSFKGTIDLNLSHNNLSGTIPKELETLPF------------------------LENLN 273
            FG+ +    +++S N L+G IP EL  L                          L NLN
Sbjct: 475 EFGNLRSIQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLN 534

Query: 274 LSFNNFEGQLPSMSVFTNTSVISIVGN--------GKLC--------------------G 305
           +SFNN  G +P M  FT  S  S  GN        G +C                    G
Sbjct: 535 ISFNNLSGIIPPMKNFTRFSPASFFGNPFLCGNWVGSICGPSLPKSQVFTRVAVICMVLG 594

Query: 306 GVPELRLLSCAIESSKKQ------------------IHHLGTKIYSYNSLWGCL--FDIL 345
            +  + ++  A+  SK+Q                  I H+   I++++ +       D  
Sbjct: 595 FITLICMIFIAVYKSKQQKPVLKGSSKQPEGSTKLVILHMDMAIHTFDDIMRVTENLDEK 654

Query: 346 IMLSVG----VFQ-KRKPRRPSLRSSLGEEF---LRIPYDEL----------LRATDGSS 387
            ++  G    V++   K  RP     +  ++    R    EL          + +  G +
Sbjct: 655 YIIGYGASSTVYKCTSKTSRPIAIKRIYNQYPSNFREFETELETIGSIRHRNIVSLHGYA 714

Query: 388 MDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAV---------------- 431
           +   GN    L +++M NGSL   LH      +LD    LKIAV                
Sbjct: 715 LSPFGN---LLFYDYMENGSLWDLLHGPGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPR 771

Query: 432 ----DIPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY---NMEW 483
               DI S N+LLD +  A + DFG+A+ +P   T        S  V G+IGY       
Sbjct: 772 IIHRDIKSSNILLDGNFEARLSDFGIAKSIPATKTYA------STYVLGTIGYIDPEYAR 825

Query: 484 VARYQHKGKGYSCGILLLEIMTGKRPTD 511
            +R   K   YS GI+LLE++TGK+  D
Sbjct: 826 TSRLNEKSDIYSFGIVLLELLTGKKAVD 853

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 166/309 (53%), Gaps = 18/309 (5%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +P ++  +  L+ L    + + G IP  +   S L  L ++SNNL G+IPPS+     
Sbjct: 129 GVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLR- 187

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
              +LRI+ AG N F+G IP+ I    +L  LGL  N L GS+P  + KLQNL       
Sbjct: 188 ---QLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLT------ 238

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
                  L L +N L+G IP S+ N++ L++L L  N+  GSIP+  G  + +  +    
Sbjct: 239 ------DLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYT 292

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
           N   G +P E+G+L +  E+DFSE+ L+  IP   G+    + L L  N+  G IP   G
Sbjct: 293 NQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELG 352

Query: 241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSM-SVFTNTSVISIVG 299
                  L+LS N L+GTIP+EL+ LP+L +L L  N  EG++P +   ++N SV+ +  
Sbjct: 353 ELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSA 412

Query: 300 NGKLCGGVP 308
           N  L G +P
Sbjct: 413 N-SLSGPIP 420

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score =  163 bits (412), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 174/649 (26%), Positives = 269/649 (41%), Gaps = 134/649 (20%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTY--------------------- 39
           G +P+ IGNL  L+N +   + + GE+P  ++    +++                     
Sbjct: 282 GKLPESIGNLTELRNFDVSQNNLTGELPEKIAALQLISFNLNDNFFTGGLPDVVALNPNL 341

Query: 40  --LSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRN 97
               +F+N+  G +P +L  F+ +S      D   N+F+G++P  +     L ++    N
Sbjct: 342 VEFKIFNNSFTGTLPRNLGKFSEISE----FDVSTNRFSGELPPYLCYRRKLQKIITFSN 397

Query: 98  CLAGSIPFSIGKLQNLQKL----NPLATSLYS-------FQLNLAENN-LTGNIPESLEN 145
            L+G IP S G   +L  +    N L+  + +        +L LA NN L G+IP S+  
Sbjct: 398 QLSGEIPESYGDCHSLNYIRMADNKLSGEVPARFWELPLTRLELANNNQLQGSIPPSISK 457

Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEH 205
              L  L +S N+  G IP        L  ID + N+F GS+P  +  L N + ++  E+
Sbjct: 458 ARHLSQLEISANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCINKLKNLERVEMQEN 517

Query: 206 MLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELET 265
           ML  EIP ++ + ++   L L  N  +G IPP  G       L+LS+N L+G IP EL  
Sbjct: 518 MLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAELLR 577

Query: 266 LPFLENLNLSFNNFEGQLPS---MSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKK 322
           L  L   N+S N   G++PS     +F      S +GN  LC   P L  +     S ++
Sbjct: 578 LK-LNQFNVSDNKLYGKIPSGFQQDIFRP----SFLGNPNLC--APNLDPIR-PCRSKRE 629

Query: 323 QIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPR----------------------- 359
             + L   I    +L G L  + I  +  +F+++  R                       
Sbjct: 630 TRYILPISILCIVALTGALVWLFIK-TKPLFKRKPKRTNKITIFQRVGFTEEDIYPQLTE 688

Query: 360 -------------RPSLRS----------------SLGEEFLRIPYDELLRATDGSS--- 387
                        R  L+S                +  E   R   + L R   G+    
Sbjct: 689 DNIIGSGGSGLVYRVKLKSGQTLAVKKLWGETGQKTESESVFRSEVETLGRVRHGNIVKL 748

Query: 388 -MDSGGNDFKALAFEFMPNGSLESWLHPNEATRR---LDLAEGLKIAV------------ 431
            M   G +F+ L +EFM NGSL   LH  +  R    LD      IAV            
Sbjct: 749 LMCCNGEEFRFLVYEFMENGSLGDVLHSEKEHRAVSPLDWTTRFSIAVGAAQGLSYLHHD 808

Query: 432 --------DIPSN-VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNS--AAVWGSIGYN 480
                   D+ SN +LLD++M   V DFGLA+ L     + +   S S  A  +G I   
Sbjct: 809 SVPPIVHRDVKSNNILLDHEMKPRVADFGLAKPLKREDNDGVSDVSMSCVAGSYGYIAPE 868

Query: 481 MEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC-EMAL 528
             + ++   K   YS G++LLE++TGKRP D  F +   +  F  E AL
Sbjct: 869 YGYTSKVNEKSDVYSFGVVLLELITGKRPNDSSFGENKDIVKFAMEAAL 917

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  162 bits (410), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 168/356 (47%), Gaps = 28/356 (7%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G++P  IG L  L+     ++   G IP+ +S  S L  L L  N + G+IP  L + T 
Sbjct: 336 GSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLT- 394

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
              KL +  A  NQ  G IP G+    +L  L L RN L G+IP  +  L+NL KL  ++
Sbjct: 395 ---KLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLIS 451

Query: 121 TSLYSF------------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG 168
            SL  F            +L L  N +TG IP  + +L  +  L+ S N L G +P   G
Sbjct: 452 NSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIG 511

Query: 169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG 228
             S L  ID ++N+  GSLP  V SLS  Q LD S +  S +IP +LG       L+L  
Sbjct: 512 SCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSK 571

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLE-NLNLSFNNFEGQLPSMS 287
           N+F G IP   G   G   L+L  N LSG IP EL  +  LE  LNLS N   G++PS  
Sbjct: 572 NLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKI 631

Query: 288 VFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFD 343
              N   I  + +  L G +  L             I +L +   SYNS  G L D
Sbjct: 632 ASLNKLSILDLSHNMLEGDLAPL-----------ANIENLVSLNISYNSFSGYLPD 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  160 bits (405), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 181/389 (46%), Gaps = 56/389 (14%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLD---- 56
           G +P+EIG L  L  LN   +  QG+IP  L   + LT L L SNNL G IP  +     
Sbjct: 486 GEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQ 545

Query: 57  ------SFTNLSTKLR----------------------ILDAGGNQFAGDIPAGIPKYFN 88
                 S+ NLS  +                       I D   N+ +G IP  + +   
Sbjct: 546 LQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLV 605

Query: 89  LIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTS 148
           L+++ L  N L+G IP S+ +L NL  L+            L+ N LTG+IP+ + N   
Sbjct: 606 LVEISLSNNHLSGEIPASLSRLTNLTILD------------LSGNALTGSIPKEMGNSLK 653

Query: 149 LQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS 208
           LQ LNL+ N L G IP+  GL  +L  ++   N  +G +P  +G+L     +D S + LS
Sbjct: 654 LQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLS 713

Query: 209 DEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF 268
            E+   L    K   L +  N F G IP   G+      L++S N LSG IP ++  LP 
Sbjct: 714 GELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPN 773

Query: 269 LENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLG 328
           LE LNL+ NN  G++PS  V  + S   + GN +LCG V       C IE         G
Sbjct: 774 LEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVG---SDCKIE---------G 821

Query: 329 TKIYSYNSLWGCLFDILIMLSVGVFQKRK 357
           TK+ S   + G +    I++ V VF  R+
Sbjct: 822 TKLRSAWGIAGLMLGFTIIVFVFVFSLRR 850

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	614
356553786	948	PREDICTED: probable LRR receptor-like se	0.964	0.624	0.359	9e-95
224121660	774	predicted protein [Populus trichocarpa]	0.964	0.764	0.382	1e-94
224121306	966	predicted protein [Populus trichocarpa]	0.956	0.607	0.371	1e-93
356553790	952	PREDICTED: probable LRR receptor-like se	0.967	0.623	0.351	4e-90
298205147	840	unnamed protein product [Vitis vinifera]	0.946	0.691	0.397	4e-89
297736629	1195	unnamed protein product [Vitis vinifera]	0.872	0.448	0.372	1e-87
255571893	891	serine-threonine protein kinase, plant-t	0.946	0.652	0.368	1e-87
224135585	1023	predicted protein [Populus trichocarpa]	0.962	0.577	0.345	5e-87
357507463	938	LRR receptor-like serine/threonine-prote	0.954	0.624	0.352	6e-87
224119022	1021	predicted protein [Populus trichocarpa]	0.956	0.574	0.352	4e-86

>gi|356553786|ref|XP_003545233.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 247/688 (35%), Positives = 358/688 (52%), Gaps = 96/688 (13%)

Query: 1   GNVPQEIGNLFRLQNLN-----FGNSTVQG-EIPSHLSPTSKLTYLSLFSNNLHGIIPPS 54
           G++P  +G+L +L   +     FG+   Q  +  S L+  ++L  L L  N   G++P  
Sbjct: 264 GSIPPTLGSLNKLTRFHIAYNSFGSGRAQDLDFLSSLTNCTQLHKLILEGNQFGGVLP-- 321

Query: 55  LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
            D   N S  L +LD G NQ +G IP GI K   L +  +  N L G+IP SIGKL+NL 
Sbjct: 322 -DLIGNFSANLTLLDIGKNQISGMIPEGIGKLIGLTEFTMVDNYLEGTIPGSIGKLKNLV 380

Query: 115 KLN----------PLATSLYSF--QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
           +            P A    +   +L L  NNL G+IP SL+  T +Q + ++ N+L G 
Sbjct: 381 RFTLEGNYLSGNIPTAIGNLTMLSELYLRTNNLEGSIPLSLKYCTRMQSVGVADNNLSGD 440

Query: 163 IPKPS-GLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKF 221
           IP  + G    L ++D ++N+F GS+PLE G+L +   L  +E+ LS EIP  L   S  
Sbjct: 441 IPNQTFGNLEGLINLDLSNNSFTGSIPLEFGNLKHLSILYLNENKLSGEIPPELSTCSML 500

Query: 222 EHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
             L+L  N F G IP F GSF+    L+LS+N+LS TIP EL+ L FL  LNLSFN+  G
Sbjct: 501 TELVLERNYFHGSIPSFLGSFRSLEILDLSNNDLSSTIPGELQNLTFLNTLNLSFNHLYG 560

Query: 282 QLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIY--------- 332
           ++P   VF N + +S++GN  LCGG+P+L+L +C+   SKK    +  K+          
Sbjct: 561 EVPIGGVFNNLTAVSLIGNKDLCGGIPQLKLPTCSRLPSKKHKWSIRKKLIVIIPKIFSS 620

Query: 333 --------------------------------SYNSLW-GCLFDILIMLSVGVFQKRKPR 359
                                           S+ S++ G L     +++V V       
Sbjct: 621 SQSLQNMYLKVSYGELHEATNGFSSSNLVGTGSFGSVYKGSLLHFESLVAVKVLNLETFG 680

Query: 360 RPSLRSSLGEEFLRIPYDELLRA-TDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEAT 418
                ++  +   +I ++ +L+  T  SS+D  G+DFKA+ FEFMPNGSL+S LH NE  
Sbjct: 681 ASKSFAAECKALGKIMHNNVLKILTFCSSVDYNGDDFKAIVFEFMPNGSLDSLLHGNEEL 740

Query: 419 RR--------------LDLAEGLK----------IAVDI-PSNVLLDYDMTAYVGDFGLA 453
                           LD+A  L+          +  DI PSN+LLD D  A++GDFGLA
Sbjct: 741 ESGNFNLNLQLLLNIALDVANALEYLHHVSEQAVVHCDIKPSNILLDDDFVAHLGDFGLA 800

Query: 454 RFLPTNVTNPMKGQSNSAAVWGSIGY----NMEWVARYQHKGKGYSCGILLLEIMTGKRP 509
           R       +  + Q +S+A+ G+IGY          R   KG  YS GILLLE++TG RP
Sbjct: 801 RLFHVLTEHSSRDQISSSAIKGTIGYVPPGKYGAGVRVSPKGDIYSYGILLLEMLTGMRP 860

Query: 510 TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIG 569
           TD MF + LSLH FC+M +PE + E+V SRLL  ++K  E    ++  IRECL +  RIG
Sbjct: 861 TDNMFGEGLSLHKFCQMTIPEEITEIVDSRLLVPINK--EGTRVIETNIRECLVAFARIG 918

Query: 570 IASLTETPNERMGVREMVMEMNVIKEVL 597
           ++   E P  RM +++++ME+  IK+ L
Sbjct: 919 VSCSAELPVRRMDIKDVIMELEAIKQKL 946

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121660|ref|XP_002330621.1| predicted protein [Populus trichocarpa] gi|222872225|gb|EEF09356.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 281/734 (38%), Positives = 383/734 (52%), Gaps = 142/734 (19%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTV---QGEIPSHLSPTSKLTYLSLFS---NNLHGIIPPS 54
           G VP  +G+L  L +L+ G + +   Q +  S L P    T L +F    N+L G++P +
Sbjct: 44  GKVPA-LGSLPYLWHLSIGYNDLGSGQDDDLSFLYPLENNTVLEIFEIAGNHLGGVLPET 102

Query: 55  LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
           L +F   S  LR++  G NQ  G IP GI    +L+ LGL+ N L+G IP SIGKLQNL 
Sbjct: 103 LGNF---SKNLRMMGFGRNQIRGTIPDGIGNLISLVALGLESNQLSGMIPSSIGKLQNLG 159

Query: 115 KL----NPLA----------TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG 160
            L    N ++          TSL +  L L  N+L G+IP +L N  +L  L LS N+L 
Sbjct: 160 YLYLDQNKISGSIPSSVGNMTSLIAAHLEL--NSLHGSIPSNLGNCQNLLELGLSNNNLS 217

Query: 161 GSIPK-----PSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITL 215
           G IPK     P G  S    ++ + N+  GSLPLEVG+L +  E+D S++ LS EIP +L
Sbjct: 218 GPIPKELLSIPLGTVS----LNLSENHLTGSLPLEVGNLVHLGEIDVSKNRLSGEIPRSL 273

Query: 216 GNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLS 275
           G+ +  E L L GN F+G IP    S +    L+LS+NNLSG IPK L  L  LE+L+LS
Sbjct: 274 GSCASLELLSLKGNFFKGSIPESLSSLRALKVLDLSYNNLSGQIPKFLGDLKLLESLDLS 333

Query: 276 FNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCA------IESSKK------- 322
           FN+ EGQ+P   VF NTSVISI GN KLCGG+P+L L  C       ++SS K       
Sbjct: 334 FNDLEGQVPVQGVFGNTSVISIAGNKKLCGGIPQLNLSRCTTNESAKLKSSTKILIVAMS 393

Query: 323 -----QIHHLGTKIY-----------SYNSLWGCLF------DILIM---------LSVG 351
                 I  + + ++           S  S WG  F      D+L+          + VG
Sbjct: 394 GGLLVVILLVSSMLFYFFRKTKDMQASSTSTWGIPFRRVAYQDLLLATNEFSSANSIGVG 453

Query: 352 ----VFQKRKP--------------RRPSLRSSLGE--EFLRIPYDELLRATDG-SSMDS 390
               V++   P              R+ + RS + E    + I +  L+R     SS+D 
Sbjct: 454 SFGSVYRGILPPDGMAVAVKVLNLLRKGASRSFMAECAALVNIRHRNLVRVVSACSSIDF 513

Query: 391 GGNDFKALAFEFMPNGSLESWLHP------NEATRRLDLAEGLKIAVDI----------- 433
            GNDFKA+ +E M NGSLE WLHP       +  R L+L + L I++D+           
Sbjct: 514 QGNDFKAIVYELMVNGSLEEWLHPIHQPNNAQELRSLNLIQRLNISIDVANALNYLHQHC 573

Query: 434 -----------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM- 481
                      PSNVLL+ +MTA VGDFGLAR  P        GQ++S  + G+IGY   
Sbjct: 574 GSTPIVHCDLKPSNVLLNAEMTACVGDFGLARLRPEVSHQLSSGQTSSVGLKGTIGYAAP 633

Query: 482 EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELV 536
           E+     V+ Y   G  YS GILLLE+ TGKRPT+ MF D L+LHN+ EMAL   V E+V
Sbjct: 634 EYGVGSDVSTY---GDVYSFGILLLEMFTGKRPTEGMFKDGLNLHNYAEMALHGRVSEVV 690

Query: 537 YSRLL-QGVDKDAEDEPCM----KAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN 591
              LL + V++       M      KI ECL S+ +IG+A   E P ERM +  +V E++
Sbjct: 691 EPILLREDVERSIHSSHRMNHIETGKILECLISIIKIGVACSVELPRERMDMSIVVAELH 750

Query: 592 VIKEVLLGVRINGE 605
            I+++L G RI G+
Sbjct: 751 RIRDILSGTRIRGQ 764

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121306|ref|XP_002330794.1| predicted protein [Populus trichocarpa] gi|222872596|gb|EEF09727.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 251/676 (37%), Positives = 348/676 (51%), Gaps = 89/676 (13%)

Query: 7   IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
           + N   LQ +    +   G +PS ++  + L+ ++L SN + G IP  L +  NL     
Sbjct: 302 VSNATSLQLMAINVNNFGGMLPSAITNFTSLSIMTLDSNRIFGSIPAGLGNLVNL----E 357

Query: 67  ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF 126
           +L  G NQF GDIP  I K   L +LGL  N L+G+IP S G L        L T LY +
Sbjct: 358 MLYMGKNQFTGDIPEEIGKLQQLKKLGLQGNKLSGNIPSSFGNLT-------LLTHLYMY 410

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLS-SIDFAHNNFNG 185
           Q     ++L G+IP  L    +L +LNLS N+L G+IPK      +L+  +D + NN  G
Sbjct: 411 Q-----SSLKGSIPPELGKCLNLLLLNLSQNNLTGAIPKEVLSIPSLTIYMDLSRNNLIG 465

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT 245
           SLP EVG+L+N   LD S +MLS EIP TLG+  + E L +  N FQG IP  F S +G 
Sbjct: 466 SLPTEVGTLTNLGILDISHNMLSGEIPGTLGSCVRLESLFMQNNFFQGTIPSSFISLRGL 525

Query: 246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCG 305
             LNLSHNNL+G+IP        L  LNLSFNNFEG +P+  VF N+S +S+VGN KLCG
Sbjct: 526 QVLNLSHNNLTGSIPDFFLDFRALATLNLSFNNFEGLVPTDGVFRNSSAVSVVGNSKLCG 585

Query: 306 GVPELRLLSCAIESSKKQIHHLGTKI-----------------YSYNSL----------- 337
           G+ E +LL C  + +KK    L  K+                  SY SL           
Sbjct: 586 GIAEFQLLECNFKGTKKGRLTLAMKLRKKVEPTPTSPENSVFQMSYRSLLKATDGFSLTN 645

Query: 338 ------WGCLFDILI-----MLSVGVFQKRKPRRPSLRSSLGEEFLRIPYDELLR-ATDG 385
                 +G ++  ++     +++V V     PR      +  E    + +  L++  T  
Sbjct: 646 LLGVGGFGSVYKGILDNDEKLVAVKVLNLLNPRASKSFKAECEVLRNVRHRNLVKLLTAC 705

Query: 386 SSMDSGGNDFKALAFEFMPNGSLESWLHP--------NEATRRLDLAEGLKIAVDI---- 433
           S  D  GNDFKAL +EFM NGSLE WLHP         E++R L+  + L IA+DI    
Sbjct: 706 SGSDYQGNDFKALVYEFMVNGSLEEWLHPITPGIDEARESSRSLNFVQRLNIAIDISCAL 765

Query: 434 -----------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGS 476
                            PSNVLLD +M  +VGDFGLARF P    N    +S++  V G+
Sbjct: 766 EYLHRGCRTPIVHCDLKPSNVLLDDEMIGHVGDFGLARFFPEATNNLSFNRSSTNGVRGT 825

Query: 477 IGYNMEWVA---RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVM 533
           IGY              G  +S GILLLE+ +GKRPTD +F D L+LH + + ALP  V 
Sbjct: 826 IGYTAPEYGMGNEVSTSGDVFSYGILLLEMFSGKRPTDVIFEDSLNLHTYMKAALPGKVE 885

Query: 534 ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI 593
           E++   L+Q +  +        +K+++C+ S+  +GIA   E P+ERM + E+  E+  I
Sbjct: 886 EILDPILVQEIKGERSSSYMWNSKVQDCVVSVFEVGIACSAELPSERMDISEVTAELQAI 945

Query: 594 KEVLLGVRINGERRIR 609
           KE LL     G   ++
Sbjct: 946 KEKLLRSEDMGTHEVQ 961

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553790|ref|XP_003545235.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 242/689 (35%), Positives = 357/689 (51%), Gaps = 95/689 (13%)

Query: 1   GNVPQEIGNLFRLQNLN-----FGNSTVQG-EIPSHLSPTSKLTYLSLFSNNLHGIIPPS 54
           G++P  +G+L +L+  +     FG+   Q  +  S L+  ++L  L L  N   G++P  
Sbjct: 265 GSIPPTLGSLNKLKRFHIAYNSFGSGRAQDLDFLSSLTNCTRLNILILEGNQFGGVLP-- 322

Query: 55  LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
            D   N S  L +LD G NQ +G IP GI K   L +  +  N L G+IP SIG L+NL 
Sbjct: 323 -DLIGNFSANLTLLDMGKNQISGMIPEGIGKLIGLTEFIMGDNYLEGTIPGSIGNLKNLV 381

Query: 115 KL----NPLATSLYSF--------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
           +     N L+ ++ +         +L L  NNL G+IP SL+  T +Q   ++ N+L G 
Sbjct: 382 RFVLQGNNLSGNIPTAIGNLTMLSELYLHTNNLEGSIPLSLKYCTRMQSFGVADNNLSGD 441

Query: 163 IPKPS-GLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKF 221
           IP  + G    L ++D ++N+F GS+PLE G+L +   L  +E+ LS EIP  LG  S  
Sbjct: 442 IPNQTFGNLEGLINLDLSYNSFTGSIPLEFGNLKHLSILYLNENKLSGEIPPELGTCSML 501

Query: 222 EHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
             L+L  N F G IP F GS +    L+LS+N+LS TIP EL+ L FL  LNLSFN+  G
Sbjct: 502 TELVLERNYFHGSIPSFLGSLRSLEILDLSNNDLSSTIPGELQNLTFLNTLNLSFNHLYG 561

Query: 282 QLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCA------------------------- 316
           ++P   VF N + +S++GN  LCGG+P+L+L +C+                         
Sbjct: 562 EVPIGGVFNNLTAVSLIGNKDLCGGIPQLKLPTCSRLPSKKHKWSIRKKLILIIPKTLSS 621

Query: 317 ---IESSKKQIH----HLGTKIYSYNSLWGC----------LFDILIMLSVGVFQKRKPR 359
              +E+ + ++     H  T  +S ++L G           L      ++V V       
Sbjct: 622 LLSLENGRVKVSYGELHEATNGFSSSNLVGTGCCGSVYRGSLLHFKGPIAVKVLNLETGG 681

Query: 360 RPSLRSSLGEEFLRIPYDELLRA-TDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEAT 418
                ++  +   +I +  LL   T  SS+D  GNDFKA+ FEFM NGSLE+ L  NE  
Sbjct: 682 ASKSFAAECKALGKIMHRNLLNVLTCCSSIDYNGNDFKAIVFEFMANGSLENLLRSNEEL 741

Query: 419 R----RLDLAEGLKIAVDI---------------------PSNVLLDYDMTAYVGDFGLA 453
                 ++L   L IA+D+                     PSN+LLD D  A++GDFGLA
Sbjct: 742 ESRNFNINLQLMLNIALDVANALDYLHHGSEQAVVHCDIKPSNILLDDDFVAHLGDFGLA 801

Query: 454 RFLPTNVTNPMKGQSNSAAVWGSIGY----NMEWVARYQHKGKGYSCGILLLEIMTGKRP 509
           R L     +  + Q +S+A+ G+IGY              KG  YS GILLLE++TG RP
Sbjct: 802 RLLNVVTGHSSRDQVSSSAIKGTIGYVPPGKYGAGVGVSPKGDIYSYGILLLEMLTGMRP 861

Query: 510 TDEMFADCLSLHNFCEMALPESVMELVYSRLL-QGVDKDAEDEPCMKAKIRECLTSLGRI 568
           TD  F + LSLH FC+MA+PE + E+V SRLL     ++      M+  IRECL S  RI
Sbjct: 862 TDNKFGESLSLHKFCQMAIPEGITEIVDSRLLVPTTTEEGTRVRVMERNIRECLVSFARI 921

Query: 569 GIASLTETPNERMGVREMVMEMNVIKEVL 597
           G+    E P +R+ ++++++E+++IK+ L
Sbjct: 922 GLTCSAELPVQRISIKDVIVELHLIKKKL 950

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205147|emb|CBI17206.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 265/667 (39%), Positives = 360/667 (53%), Gaps = 86/667 (12%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
           N  +L+      +   G IP  LS  S L +L L +N L G +P SL            L
Sbjct: 180 NFPQLRKFGIAGNQFTGVIPDTLSNISGLEHLDLGNNYLTGQVPDSLGK----------L 229

Query: 69  DAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ--KLN--------- 117
             G N+ +G IP  I    +L      RN L G+IP SIGKLQNL+  +LN         
Sbjct: 230 IIGDNKISGSIPKEIGNLISLTVFSAMRNNLTGAIPTSIGKLQNLRVFELNWNRLSGLLP 289

Query: 118 -PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPS-GLFSTLSS 175
             L  S   + L++  NNL GNIP SL N  +++IL L  N L GS+P+     F+ L S
Sbjct: 290 STLCNSSQLYYLDMGYNNLEGNIPTSLRNCQNMEILFLDHNKLNGSVPENVIDHFNQLRS 349

Query: 176 IDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI 235
           +    N   GSLP + G L N  +L  S++ LS EIP  LG+ S  E+L +  N FQG I
Sbjct: 350 LYLQQNTLTGSLPADFGQLKNLNQLLVSDNNLSGEIPRELGSCSVLEYLDMARNSFQGNI 409

Query: 236 PPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVI 295
           P  F S  G   L+LS NNLSG IPKEL+ L  L +LNLS++  EG++PS  VF N S I
Sbjct: 410 PLSFSSLGGIQILDLSCNNLSGMIPKELQHLSALLSLNLSYSYIEGEVPSGGVFKNVSGI 469

Query: 296 SIVGNGKLCGGVPELRLLSCA-IESSKK-QIHHLGTKI----------------YSYNSL 337
           SI GN KLCGG+P+L+L +C+ +ES+K  +  HL TKI                 SY  L
Sbjct: 470 SITGNKKLCGGIPQLQLPACSDVESAKHGKGKHLSTKIAVMKSSSTFLRYGYLRVSYKEL 529

Query: 338 W----GCLFDILI-MLSVGVFQK------RKP---------RRPSLRSSLGE-EFLR-IP 375
                G  + ILI M S G   K       +P         +R + +S + E + LR I 
Sbjct: 530 LKATSGFAYSILIGMGSFGSVYKGILSRGERPVAVKVLNLQQRGAAKSFMAECKVLRNIQ 589

Query: 376 YDELLRA-TDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIP 434
              LLR  T  SS+D+ G DFKAL FEFMPNG+L+SWLH    +R L   + L IA+DI 
Sbjct: 590 QRNLLRIITSCSSVDNKGCDFKALVFEFMPNGNLDSWLH--HESRNLSFRQRLDIAIDIS 647

Query: 435 SN----VLLDYDMTAYVGD----FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR 486
           S+      L      YV      +    FL       +K ++   A +G IG +M W   
Sbjct: 648 SSDQTSSALLMASIGYVAPGTLLYVFCTFLKITCEVIVKKKNICMAEYG-IGGSM-W--- 702

Query: 487 YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLL----Q 542
              +G  YS GIL L+++TG+RP + MF+D LSLH+F +MALPE VME+  S L+    +
Sbjct: 703 --PQGDMYSYGILFLQMLTGRRPIEHMFSDGLSLHSFSKMALPERVMEIADSTLVGESGE 760

Query: 543 GVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVRI 602
            ++  A +   M+ ++++CL S+ RIG+A   E+P  RM ++++VME+N+IKEV LGV I
Sbjct: 761 AINNIA-NHGDMEGRMQDCLASIARIGVACSEESPGGRMDIKDVVMELNIIKEVFLGVGI 819

Query: 603 NGERRIR 609
           +GER IR
Sbjct: 820 HGERHIR 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736629|emb|CBI25500.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 246/660 (37%), Positives = 337/660 (51%), Gaps = 124/660 (18%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQ---------GEIPSHLSPTSKLTY------LSLFSN 45
           G +P+  GNL  L+ L+   + +          G IP  LS  S L Y      L+L  N
Sbjct: 354 GGIPRSFGNLSSLERLSATQNNIDLSLSGNRFTGSIPVSLSNASNLEYFSCNEVLALNVN 413

Query: 46  NLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPF 105
           N  G++P   +S  N STKL  L   GN+  G IPAGI    +L +L +  N L+GSIP 
Sbjct: 414 NFGGVLP---ESIGNWSTKLATLLLDGNKIGGSIPAGIGNLVSLERLEMWENQLSGSIPV 470

Query: 106 SIGKLQNLQKLNPLATSLYS---------------------FQLNLAENNLTGNIPESLE 144
            IGKLQNL+K N +    +                       QL L  N   G IP SL 
Sbjct: 471 DIGKLQNLRKENSIQGGEFKKVHEPSFNRILPSSLGNLENLIQLVLGRNYFQGKIPSSLG 530

Query: 145 NLTSLQILNLSCNHLGGSIP-KPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFS 203
              +L  L+LS N+L G+IP +   L S   S+D + N   G+LP+EVG+L N   LD S
Sbjct: 531 KCQNLLFLDLSLNNLSGTIPPQVVSLSSLSISLDISDNRLTGALPIEVGNLKNLGVLDVS 590

Query: 204 EHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKEL 263
            +MLS  IP ++G+ +  E+L + GN FQG IP  F S +G   L+LSHNNLSG IP+ L
Sbjct: 591 NNMLSGGIPSSVGSCTSLEYLSMKGNFFQGSIPSSFSSLRGIRILDLSHNNLSGKIPEFL 650

Query: 264 ETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQ 323
           + + F + +NLS+N+FEG LP+  VF N                P+ R LS A++     
Sbjct: 651 QDIHF-QLVNLSYNDFEGILPTEGVFKN----------------PKKRGLSLALK----- 688

Query: 324 IHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPRRPSLRSSLGEEFLRIPYDELLRAT 383
                                       +    K   P+  SS  +  L++ Y  LLRAT
Sbjct: 689 ----------------------------IIIATKKGEPASSSSE-KSLLKVSYQSLLRAT 719

Query: 384 DGSSMDS--GGNDFKALAFEFMPNGSLESWLHPNEAT-------RRLDLAEGLKIAVDIP 434
           DG S  +  GGNDFKA+ +EFM NGSLE WLHP   T       R+L+  + L IA+D P
Sbjct: 720 DGFSSSNLIGGNDFKAVVYEFMVNGSLEQWLHPTPTTAEASAPPRKLNFLQRLNIAID-P 778

Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWV---ARYQHKG 491
           SNVLLD +MT +VGDFG+A+FLP   T   + QS+S  + G+IGY        +     G
Sbjct: 779 SNVLLDTEMTGHVGDFGIAKFLPEAATRVPEIQSSSIGIRGTIGYAAPEYGMGSEVSTSG 838

Query: 492 KGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDE 551
             YS GILLLE+ TGKRPT++MF D L++HNF + A+PE        R       DA+  
Sbjct: 839 DVYSFGILLLEMFTGKRPTEDMFKDSLNIHNFVKTAVPE--------RRRMASSHDAQ-- 888

Query: 552 PCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL--GVRINGERRIR 609
                   ECL S+  IG+A   E P ER  + +   E+N ++++ L  G+ I  +R+++
Sbjct: 889 --------ECLISIFGIGLACSAELPRERKNITDAAAELNSVRDIFLGTGLHIRDDRQVQ 940

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571893|ref|XP_002526889.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533788|gb|EEF35520.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 236/640 (36%), Positives = 346/640 (54%), Gaps = 59/640 (9%)

Query: 1   GNVPQEIGNLFRLQNLNFG----NSTVQGEIP--SHLSPTSKLTYLSLFSNNLHGIIPPS 54
           G+VP+ +G L  LQ L  G     S   G+    S LS  +KL  L++  N   G++P  
Sbjct: 282 GSVPETLGKLKNLQELLIGYNSLGSAKAGDFNFLSSLSNCTKLELLAIHGNRFGGVLP-- 339

Query: 55  LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
            D+  NLS++L++L  G N  +G+IP  I     L  L +  N L G+IP S+GKL+N+ 
Sbjct: 340 -DAVGNLSSQLKMLFMGRNHISGNIPEAIGNLVGLTLLDMGINFLTGTIPVSVGKLRNIG 398

Query: 115 KLNPLATSLYS------------FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
           +L     +L+             F L L +NN  G+IP SL+N T +Q L L  N+  GS
Sbjct: 399 RLFFHRNNLHGKVPSFFGNFSRLFDLYLHDNNFEGSIPISLKNCTEMQNLFLHKNNFSGS 458

Query: 163 IPKPSGLFSTLS---SIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRS 219
           +P    +F++L    +I   +N   G LP ++GSLSN   LD SE+ LS EIP+ LG+ S
Sbjct: 459 LPNQ--MFASLQNLITIYIFYNFLTGPLPSDIGSLSNLVVLDVSENKLSGEIPMDLGSCS 516

Query: 220 KFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNF 279
               L + GN FQG IP  F   K    L+LS NNLSG IP +L+ L +L  LNLSFN  
Sbjct: 517 GLRELSMAGNFFQGTIPLSFRFLKSLESLDLSRNNLSGRIPHQLDDLSYLMKLNLSFNFL 576

Query: 280 EGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWG 339
           EG++P   VF N +  S++GN  LCGGVP+L L +C  +  K++ +    K+    ++  
Sbjct: 577 EGEVPLGGVFGNVTGFSMMGNNMLCGGVPKLNLPACLNKKLKRKGNIQSVKVIVPITISI 636

Query: 340 CLFDILIMLSVGVFQKRKPRRPSLRSSLGEE-FLRIPYDELLRATDGSSMDSGGNDFKAL 398
            +   L+M+   +++KR  R  SL +SL +   LR+ Y ELL+AT G             
Sbjct: 637 LVASTLMMVLFILWRKRNSREKSLFASLLDAGHLRLSYKELLQATGG------------- 683

Query: 399 AFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-PSNVLLDYDMTAYVGDFGLARFLP 457
                 + SL  +LH           E   +  D+ PSNVLLD DM A+VGDFGLA+ L 
Sbjct: 684 ----FASSSLIDYLHYR--------CEPPIVHCDLKPSNVLLDDDMVAHVGDFGLAKLLS 731

Query: 458 TNVTNPMKGQSNSAAVWGSIGYNMEWVA---RYQHKGKGYSCGILLLEIMTGKRPTDEMF 514
               +  + Q++S+ + G+IGY             +G  YS GILLLE++T KRPTD++F
Sbjct: 732 LATDDFSRDQTSSSVIKGTIGYVAPEYGIGGTVSPEGDIYSYGILLLEMITAKRPTDDVF 791

Query: 515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE---DEPCMKAKIRECLTSLGRIGIA 571
            +  SLHN C+ A PE+V ++V S LLQ   + ++   ++  M  ++ ECL S  RIG++
Sbjct: 792 PEGFSLHNTCKRASPENVRDIVDSYLLQQSVEGSDSISNQHGMNGQMWECLVSFLRIGVS 851

Query: 572 SLTETPNERMGVREMVMEMNVIKEVLLGVRINGERRIRKN 611
              E P+ERM +++++ E+   K +LL     G  R  K+
Sbjct: 852 CSAELPSERMNIKDVIKELCAAKNMLLQAGKRGRVRNYKH 891

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135585|ref|XP_002322110.1| predicted protein [Populus trichocarpa] gi|222869106|gb|EEF06237.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 248/717 (34%), Positives = 360/717 (50%), Gaps = 126/717 (17%)

Query: 1    GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLS------LFSNNLHGIIPPS 54
            G VP  +GNL  L+ +NFG + +  E  S L+  + LT  +       F N+L G++P S
Sbjct: 310  GPVPNNLGNLQNLETINFGGNPLGDENTSDLTFLTSLTNCTNLREVWFFENHLRGVLPIS 369

Query: 55   LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
            +    NLST L  L  G N   GDIP  I    NL  L    N L G +P SIGKL  LQ
Sbjct: 370  I---ANLSTNLYWLTLGTNYITGDIPVEIENLKNLEYLAFHGNMLTGRLPDSIGKLSKLQ 426

Query: 115  KL----NPLATSLYS--------FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
            +L    N ++ ++ S         +L+LA+N L G IP SL N + L++L+LS NHL G 
Sbjct: 427  ELHIYTNKISGNIPSSFGNLSGILRLSLADNFLEGTIPVSLANYSQLEVLDLSYNHLSGV 486

Query: 163  IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFE 222
            IP+      +L  +  A NN  G LP ++G+  N  ELD SE+ LS EIP ++ N    E
Sbjct: 487  IPEKLAGIDSLFGLFLALNNLTGPLPSQLGNARNLNELDISENKLSGEIPRSIENCVMLE 546

Query: 223  HLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQ 282
            +L + GN F+G IP  F   +    LNL+ NNLSG IPK L  LP L  LNLS N+F+G+
Sbjct: 547  NLNMEGNFFEGTIPSSFKKLRSIRVLNLARNNLSGQIPKFLGELPLLGYLNLSVNSFDGE 606

Query: 283  LPSMSVFTNTSVISIVGNGKLCGGV--------PELR-----------LLS--------- 314
            +P+  VF N S  S+ GN KLCGG+        P+ R           L+S         
Sbjct: 607  VPTGGVFNNASAFSVAGNDKLCGGIKALQLHECPKQRQENGFPRKVVILISSVALFLLLL 666

Query: 315  ----CAIESSKKQIHHLGTKIYS----------YNSL-----------------WGCLFD 343
                CA+  SKK  + +G  + S          Y+ L                 +G ++ 
Sbjct: 667  LASVCAVIHSKKT-NKIGPSLVSPLEKKYQRVSYSELARATGGFSSTNIIGDGKYGTVYK 725

Query: 344  ILI----MLSVGVFQKRKPRRPSLRSSLGE--EFLRIPYDELLRATDG-SSMDSGGNDFK 396
             ++     ++V VF+ ++  R +  + + E      I +  L+R  +  S++D  G+DFK
Sbjct: 726  GILGSDDQVAVKVFKLQQ--RGANNTFMAEINALRNIRHRNLVRIVNSCSTIDFKGDDFK 783

Query: 397  ALAFEFMPNGSLESWLHPN----EATRRLDLAEGLKIAVDI------------------- 433
            AL  EFM NGSLESWLH +    E  + L L + + IA D+                   
Sbjct: 784  ALIMEFMSNGSLESWLHASSTESEDFKNLSLLQRINIATDVALALDYLHNQCETTVVHCD 843

Query: 434  --PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY---NMEWVARYQ 488
              PSN+LLD D+TA+VGDFGLA+ L   +      +S+S  + G+IGY            
Sbjct: 844  LKPSNILLDNDLTAHVGDFGLAKILLAALGESFSTESSSICIRGTIGYVAPEYGMGGEAS 903

Query: 489  HKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDA 548
              G  YS GILLLE+ TGKRP D MF    +LH+F + ALP+ VME++   L   + ++A
Sbjct: 904  THGDVYSYGILLLEMFTGKRPIDSMFTGEFNLHSFVKAALPDQVMEIIDPLLSNDIQEEA 963

Query: 549  E--------DEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL 597
            +               K++ECL S+ ++G+    + P+ERM + ++  E++ I ++L
Sbjct: 964  QTRRNGPRGSRSINIGKVKECLASILQVGLRCSADLPSERMDIGDVPSELHKITKIL 1020

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507463|ref|XP_003624020.1| LRR receptor-like serine/threonine-protein kinase FEI [Medicago truncatula] gi|355499035|gb|AES80238.1| LRR receptor-like serine/threonine-protein kinase FEI [Medicago truncatula]

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 244/693 (35%), Positives = 340/693 (49%), Gaps = 107/693 (15%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNL------------- 47
           G+ P  I NL  L+     N++  G+IP  L   +KL   ++  NN              
Sbjct: 249 GSFPSSISNLTTLKEFEIANNSFNGQIPLTLGRLTKLKRFNIAMNNFGIGGAFDLDFLSS 308

Query: 48  --------------HGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLG 93
                         +  +   LD   N ST L  L    NQ  G IP  I +  NL  L 
Sbjct: 309 LTNCTQLSTLLISQNRFVGKLLDLIGNFSTHLNSLQMQFNQIYGVIPERIGELINLTYLN 368

Query: 94  LDRNCLAGSIPFSIGKLQNLQKLNPLATSLYS------------FQLNLAENNLTGNIPE 141
           +  N L G+IP+SIGKL+NL  L   +  LY              +L L EN L G+IP 
Sbjct: 369 IGNNYLEGTIPYSIGKLKNLGGLYLKSNKLYGNIPTSIANLTILSELYLNENKLEGSIPL 428

Query: 142 SLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH---NNFNGSLPLEVGSLSNTQ 198
           SL   T L+ ++ S N L G IP     F  L  + F H   N+F G +P E G L    
Sbjct: 429 SLIYCTRLEKVSFSDNKLSGDIPNQK--FIHLKHLIFLHLDNNSFTGPIPSEFGKLMQLS 486

Query: 199 ELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGT 258
            L    +  S EIP  L +      L LG N   G IP F GS +    L++S+N+ S T
Sbjct: 487 RLSLDSNKFSGEIPKNLASCLSLTELRLGRNFLHGSIPSFLGSLRSLEILDISNNSFSST 546

Query: 259 IPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIE 318
           IP ELE L FL+ LNLSFNN  G++P   +F+N + IS+ GN  LCGG+P+L+L +C+I+
Sbjct: 547 IPFELEKLRFLKTLNLSFNNLHGEVPVGGIFSNVTAISLTGNKNLCGGIPQLKLPACSIK 606

Query: 319 SSKKQIH---------------HLGTKIYSYNSLWGC-LFDILIMLSVGVFQKRKP---- 358
             +                   H  T  YS ++L G   F  + + S+  F  R+P    
Sbjct: 607 PKRLPSSPSLQNENLRVTYGDLHEATNGYSSSNLLGAGSFGSVYIGSLPNF--RRPIAIK 664

Query: 359 -----RRPSLRSSLGE--EFLRIPYDELLRA-TDGSSMDSGGNDFKALAFEFMPNGSLES 410
                 R + +S + E     ++ +  L++  T  SS+D  G DFKA+ FEFMPN SLE 
Sbjct: 665 VLNLETRGAAKSFIAECKSLGKMKHRNLVKILTCCSSVDYKGEDFKAIVFEFMPNMSLEK 724

Query: 411 WLHPNEA--------TRRLDLAEGLKIAVDI---------------PSNVLLDYDMTAYV 447
            LH NE         T+R+D+A  +  A+D                PSNVLLD D+ A++
Sbjct: 725 MLHDNEGSGSHNLNLTQRIDIALDVAHALDYLHNDIEQAVVHCDVKPSNVLLDDDIVAHL 784

Query: 448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARY------QHKGKGYSCGILLL 501
           GDFGLAR +  +  +    Q  S+ + G+IGY      RY        +G  YS GILLL
Sbjct: 785 GDFGLARLINGSSNHSSNDQITSSTIKGTIGYVPP--GRYGTGVPVSPQGDIYSFGILLL 842

Query: 502 EIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIREC 561
           E++TGKRP D MF + LSLH FC+M +PE ++E+V SRLL    +D      ++ KIR C
Sbjct: 843 EMLTGKRPADNMFCENLSLHKFCKMKIPEGILEIVDSRLLIPFAEDRTG--IVENKIRNC 900

Query: 562 LTSLGRIGIASLTETPNERMGVREMVMEMNVIK 594
           L    RIG+A   E P  RM ++++++++N IK
Sbjct: 901 LVMFARIGVACSQEFPAHRMLIKDVIVKLNEIK 933

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 253/717 (35%), Positives = 355/717 (49%), Gaps = 130/717 (18%)

Query: 2    NVPQEIGNLFRLQNLNF----GNSTVQGE-----IPSHLSPTSKLTYLSLFSNNLHGIIP 52
            N+  E+  L +L  LNF     N    G+       S L+  + L YLS+  NN  G +P
Sbjct: 300  NLTGEVPTLEKLHRLNFFTLFSNHLGSGQANDLSFLSSLTNATTLEYLSIKRNNFGGELP 359

Query: 53   PSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQN 112
              +   +NLST L ++    N   G IPAGI K  NL    +  N ++G IP SIG+LQN
Sbjct: 360  KQI---SNLSTMLGVISLPENNILGSIPAGIEKLVNLKVFDVGNNKISGIIPSSIGELQN 416

Query: 113  LQKL----NPLATSLYS--------FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG 160
            L+ L    N L+  + S          L L +N+L G+IP SL N   L +L L  N+L 
Sbjct: 417  LEGLVLDYNNLSGRIPSSVGNLTKLMALYLGDNSLEGSIPSSLGNCKKLLVLTLCGNNLS 476

Query: 161  GSIPKPSGLFSTLS--SIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNR 218
            G IP   GLF   S   I F+ N+F+GSLP+E+G L N + LD S +MLS EIP +LG  
Sbjct: 477  GDIPP--GLFGIFSLLYICFSKNHFSGSLPIEIGKLINLEFLDVSGNMLSGEIPSSLGGC 534

Query: 219  SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNN 278
               E L +  N F G IP    S +G +  N SHNNLSG IP+  +    LE L+LS+NN
Sbjct: 535  ISLEDLYMNSNFFHGSIPSALSSLRGVLQFNFSHNNLSGKIPEFFQGFNSLEMLDLSYNN 594

Query: 279  FEGQLPSMSVFTNTSVISIVGNGKLCG-----GVPELR---------------------- 311
            FEG +P   +F N++ +S++GN +LCG     G+P  +                      
Sbjct: 595  FEGMIPDEGIFKNSTAVSVIGNSQLCGGNTELGLPRCKVHQPKRLKLKLKIAIFAITVLL 654

Query: 312  --------LLSCAIESSKKQIHHLGTK-------------------------IYSYNSLW 338
                    L  C+    +++I     +                         I S+ S++
Sbjct: 655  ALALVVTCLFLCSSRRKRREIKLSSMRNELLEVSYQILLKATNGFSSSNLVGIGSFGSVY 714

Query: 339  GCLFDILIMLSVGVFQKRKPRRPSLRSSLGE-EFLR-IPYDELLRA-TDGSSMDSGGNDF 395
              + D   M+ + V      R+ + RS + E E LR I +  L++  T  SS+D  GNDF
Sbjct: 715  KGMLDQNGMV-IAVKVLNLMRQGASRSFIAECEALRNIRHRNLVKVLTACSSIDYHGNDF 773

Query: 396  KALAFEFMPNGSLESWLHPNEAT----------RRLDLAEGLKIAVDI------------ 433
            KA+ +EFM NGSLE WLHP              +RL++A  +  A++             
Sbjct: 774  KAIVYEFMANGSLEDWLHPTGTGGGTTLTLNLLQRLNIAIDVACALEYLHHHCEMPIAHC 833

Query: 434  ---PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----V 484
               PSNVLLD ++T +VGDFGLA+FL     +    +S S  V G+IGY   E+     V
Sbjct: 834  DLKPSNVLLDDELTGHVGDFGLAKFLSGASLDYPTNESTSIGVRGTIGYAPPEYGVGGEV 893

Query: 485  ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQ-- 542
            + Y   G  YS GILLLE+ TGKRPTDEMF +  +LHNF + A+PE V ++    LLQ  
Sbjct: 894  SAY---GDTYSYGILLLEMFTGKRPTDEMFREGSNLHNFVKRAVPEQVKQITDPTLLQEE 950

Query: 543  --GVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL 597
              G D   E      ++  ECL S+ RIGI+   E P ERM + + V +++ ++  L
Sbjct: 951  PTGDDDKHEISSMRNSRPLECLNSILRIGISCSVEFPRERMKISDAVAQLHSVRNEL 1007

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	614
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.565	0.338	0.359	3.6e-75
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.638	0.388	0.334	2.1e-74
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.649	0.389	0.331	9.4e-74
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.641	0.390	0.309	7.5e-66
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.600	0.364	0.314	1.3e-64
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.641	0.382	0.308	2.6e-62
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.617	0.466	0.347	4.8e-55
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.495	0.243	0.352	4.8e-49
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.496	0.260	0.353	2.3e-48
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.483	0.303	0.300	1.3e-45

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 456 (165.6 bits), Expect = 3.6e-75, Sum P(3) = 3.6e-75
 Identities = 134/373 (35%), Positives = 184/373 (49%)

Query:    29 SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN 88
             S L+  SKL  L+L  NNL G++P   +SF+NLST L  L    N+  G IP  I     
Sbjct:   345 SDLTNCSKLQTLNLGENNLGGVLP---NSFSNLSTSLSFLALELNKITGSIPKDIGNLIG 401

Query:    89 LIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPLATSL-----YSFQLN---LAENNLT 136
             L  L L  N   GS+P S+G+L+NL  L    N L+ S+        +LN   L  N  +
Sbjct:   402 LQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFS 461

Query:   137 GNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS--TLS-SIDFAHNNFNGSLPLEVGS 193
             G IP +L NLT+L  L LS N+L G  P PS LF+  TLS  I+ + NN  GS+P E+G 
Sbjct:   462 GWIPYTLSNLTNLLSLGLSTNNLSG--PIPSELFNIQTLSIMINVSKNNLEGSIPQEIGH 519

Query:   194 LSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHN 253
             L N  E     + LS +IP TLG+     +L L  N+  G IP   G  KG   L+LS N
Sbjct:   520 LKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSN 579

Query:   254 NLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLL 313
             NLSG IP  L                 G++P++  F   S ISI GN KLCGG+P+L L 
Sbjct:   580 NLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIPDLHLP 639

Query:   314 SCA-IESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQXXXXXXXXXXXXXGEEFL 372
              C  +  ++K    L   + S  +    L  + ++++    +             G    
Sbjct:   640 RCCPLLENRKHFPVLPISV-SLAAALAILSSLYLLITW--HKRTKKGAPSRTSMKGHPL- 695

Query:   373 RIPYDELLRATDG 385
              + Y +L++ATDG
Sbjct:   696 -VSYSQLVKATDG 707

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
 Identities = 142/424 (33%), Positives = 206/424 (48%)

Query:     1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
             GNVP  +  LF   N    +S+   E  + L+  ++L  L +  N L G +P S+    N
Sbjct:   303 GNVPN-LKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISI---AN 358

Query:    61 LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL---- 116
             LS KL  LD GG   +G IP  I    NL +L LD+N L+G +P S+GKL NL+ L    
Sbjct:   359 LSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFS 418

Query:   117 NPLATSLYSF--------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG 168
             N L+  + +F         L+L+ N   G +P SL N + L  L +  N L G+IP    
Sbjct:   419 NRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIM 478

Query:   169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG 228
                 L  +D + N+  GSLP ++G+L N   L   ++ LS ++P TLGN    E L L G
Sbjct:   479 KIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEG 538

Query:   229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSV 288
             N+F G IP   G   G  +++LS+N+LSG+IP+   +              EG++P   +
Sbjct:   539 NLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGI 597

Query:   289 FTNTSVISIVGNGKLCGGVPELRLLSCAIESS---KKQIHHLGTKIYSYNSLWGCLFDIL 345
             F N + +SIVGN  LCGG+   +L  C  ++    KK    L  K+    S+   L  +L
Sbjct:   598 FENATTVSIVGNNDLCGGIMGFQLKPCLSQAPSVVKKHSSRL-KKVVIGVSVGITLLLLL 656

Query:   346 IMLSVGVF---QXXXXXXXXXXXXXGEEFL--RIPYDELLRATDGSS----MDSG--GND 394
              M SV +    +               E L  +I Y +L  AT+G S    + SG  G  
Sbjct:   657 FMASVTLIWLRKRKKNKETNNPTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTV 716

Query:   395 FKAL 398
             +KAL
Sbjct:   717 YKAL 720

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 9.4e-74, Sum P(3) = 9.4e-74
 Identities = 143/431 (33%), Positives = 203/431 (47%)

Query:     1 GNVPQEIGNLFRLQNLNFGNSTV----QGEIP--SHLSPTSKLTYLSLFSNNLHGIIPPS 54
             G +P   G L  L  L   N+++     G++     L+  S+L YL++  N L G +P  
Sbjct:   312 GKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVF 371

Query:    55 LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
             +    NLST+L  L  GGN  +G IP GI    +L  L L  N L G +P S+G+L  L+
Sbjct:   372 I---ANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELR 428

Query:   115 KL----NPLA----TSLYSFQ----LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
             K+    N L+    +SL +      L L  N+  G+IP SL + + L  LNL  N L GS
Sbjct:   429 KVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGS 488

Query:   163 IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFE 222
             IP       +L  ++ + N   G L  ++G L     LD S + LS +IP TL N    E
Sbjct:   489 IPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLE 548

Query:   223 HLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQ 282
              LLL GN F G IP   G   G   L+LS NNLSGTIP+ +                +G 
Sbjct:   549 FLLLQGNSFVGPIPDIRG-LTGLRFLDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGA 607

Query:   283 LPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIE-----SSKKQIHHLGTKIYSYNSL 337
             +P+  VF NTS +S+ GN  LCGG+P L+L  C++E     SS ++I  +         L
Sbjct:   608 VPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPCSVELPRRHSSVRKIITICVSAVMAALL 667

Query:   338 WGCLFDILIM---LSVGVFQXXXXXXXXXXXXXGEEFLRIPYDELLRATDGSSMDS--GG 392
               CL  + +    L V   +                + +I YDEL + T G S  +  G 
Sbjct:   668 LLCLCVVYLCWYKLRVKSVRANNNENDRSFSPVKSFYEKISYDELYKTTGGFSSSNLIGS 727

Query:   393 NDFKALAFEFM 403
              +F A+   F+
Sbjct:   728 GNFGAVFKGFL 738

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.5e-66, Sum P(3) = 7.5e-66
 Identities = 132/427 (30%), Positives = 200/427 (46%)

Query:     1 GNVPQEIGNLFRLQNLNFGNSTVQ----GEIP--SHLSPTSKLTYLSLFSNNLHGIIPPS 54
             G++    G L  L  L   N+++     G++     L+  S L  LS+  N L G +P S
Sbjct:   297 GSISPNFGKLENLHYLELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTS 356

Query:    55 LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
             +    N+ST+L +L+  GN   G IP  I     L  L L  N L G +P S+G L  L 
Sbjct:   357 I---VNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLG 413

Query:   115 KL----NPLATSLYSF--------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
             +L    N  +  + SF        +L L+ N+  G +P SL + + +  L +  N L G+
Sbjct:   414 ELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGT 473

Query:   163 IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFE 222
             IPK      TL  ++   N+ +GSLP ++G L N  EL    + LS  +P TLG     E
Sbjct:   474 IPKEIMQIPTLVHLNMESNSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSME 533

Query:   223 HLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQ 282
              + L  N F G IP   G   G  +++LS+NNLSG+I +  E               EG+
Sbjct:   534 VIYLQENHFDGTIPDIKG-LMGVKNVDLSNNNLSGSISEYFENFSKLEYLNLSDNNFEGR 592

Query:   283 LPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHH--LGTKIYSYNSLWGC 340
             +P+  +F N +++S+ GN  LCG + EL+L  C  ++   +  H  L  K+    S+   
Sbjct:   593 VPTEGIFQNATLVSVFGNKNLCGSIKELKLKPCIAQAPPVETRHPSLLKKVAIGVSVGIA 652

Query:   341 LFDILIMLSVGVFQXXXXXXXXXXXX--XGEEFL-RIPYDELLRATDGSS----MDSG-- 391
             L  +L ++S+  F+                E F  ++ Y +L  ATDG S    + SG  
Sbjct:   653 LLLLLFIVSLSWFKKRKNNQKINNSAPFTLEIFHEKLSYGDLRNATDGFSSSNIVGSGSF 712

Query:   392 GNDFKAL 398
             G  FKAL
Sbjct:   713 GTVFKAL 719

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
 Identities = 125/398 (31%), Positives = 187/398 (46%)

Query:    26 EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
             E    L+  + L  LS+    L G +P S+    N+ST+L  L+  GN F G IP  I  
Sbjct:   328 EFIDSLTNCTHLQLLSVGYTRLGGALPTSI---ANMSTELISLNLIGNHFFGSIPQDIGN 384

Query:    86 YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPLATSLYSF-----QLN---LAEN 133
                L +L L +N L G +P S+GKL  L  L    N ++  + SF     QL    L+ N
Sbjct:   385 LIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNN 444

Query:   134 NLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGS 193
             +  G +P SL   + +  L +  N L G+IPK      TL ++    N+ +GSLP ++GS
Sbjct:   445 SFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLPNDIGS 504

Query:   194 LSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHN 253
             L N  +L    +  S  +P TLGN    E L L GN F G IP   G   G   ++LS+N
Sbjct:   505 LQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPNIRG-LMGVRRVDLSNN 563

Query:   254 NLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLL 313
             +LSG+IP+                   G++PS   F N++++ + GN  LCGG+ +L+L 
Sbjct:   564 DLSGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIKDLKLK 623

Query:   314 SCAIESSKKQIHHLG--TKIYSYNSLWGCLFDILIMLSVGV--FQXXXXXXXXXXXXXGE 369
              C  +    +  H     K+    S+   L  +L++ S+ +  F+              +
Sbjct:   624 PCLAQEPPVETKHSSHLKKVAILVSIGIALLLLLVIASMVLCWFRKRRKNQQTNNLVPSK 683

Query:   370 -EFL--RIPYDELLRATDGSS----MDSG--GNDFKAL 398
              E    +I Y +L  AT+G S    + SG  G  FKAL
Sbjct:   684 LEIFHEKISYGDLRNATNGFSSSNMVGSGSFGTVFKAL 721

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 2.6e-62, Sum P(3) = 2.6e-62
 Identities = 133/431 (30%), Positives = 202/431 (46%)

Query:     1 GNVPQEIGNLFRL-----QNLNFGNSTVQG-EIPSHLSPTSKLTYLSLFSNNLHGIIPPS 54
             G++P   G L  L     +N + GN++  G E    ++  ++L YL +  N L G +P S
Sbjct:   304 GSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPAS 363

Query:    55 LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
             +    NLST L  L  G N  +G IP  I    +L +L L+ N L+G +P S GKL NLQ
Sbjct:   364 I---ANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQ 420

Query:   115 KL----NPLATSLYSF--------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
              +    N ++  + S+        +L+L  N+  G IP+SL     L  L +  N L G+
Sbjct:   421 VVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGT 480

Query:   163 IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFE 222
             IP+      +L+ ID ++N   G  P EVG L     L  S + LS ++P  +G     E
Sbjct:   481 IPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSME 540

Query:   223 HLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQ 282
              L + GN F G IP          +++ S+NNLSG IP+ L +              EG+
Sbjct:   541 FLFMQGNSFDGAIPDI-SRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGR 599

Query:   283 LPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGT--KIYSYNSLW-G 339
             +P+  VF N + +S+ GN  +CGGV E++L  C +++S ++   L    K+ S   +   
Sbjct:   600 VPTTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQASPRKRKPLSVRKKVVSGICIGIA 659

Query:   340 CLFDILIMLSVGVFQXXXXXXXXX------XXXXGEEFLRIPYDELLRATDGSS----MD 389
              L  I+I+ S+  F                    G    ++ Y+EL  AT   S    + 
Sbjct:   660 SLLLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGMFHEKVSYEELHSATSRFSSTNLIG 719

Query:   390 SG--GNDFKAL 398
             SG  GN FK L
Sbjct:   720 SGNFGNVFKGL 730

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 472 (171.2 bits), Expect = 4.8e-55, Sum P(2) = 4.8e-55
 Identities = 142/409 (34%), Positives = 189/409 (46%)

Query:     1 GNVPQEIGNLFRLQNLNFGNSTVQGE------IPSHLSPTSKLTYLSLFSNNLHGIIPPS 54
             G VP EIG +  LQ L    +  + E        + L+  S L  + L      G++P  
Sbjct:   285 GVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLP-- 342

Query:    55 LDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
              DS +NLS+ L  L    N+ +G +P  I    NL  L L  N L GS+P S  KL+NL+
Sbjct:   343 -DSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLANNSLTGSLPSSFSKLKNLR 401

Query:   115 KL----NPLATSLYSFQLNLAE--------NNLTGNIPESLENLTSLQILNLSCNHLGGS 162
             +L    N L  SL     NL +        N   G IP +L NLT L  +NL  N+  G 
Sbjct:   402 RLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGNLTKLFQINLGHNNFIGQ 461

Query:   163 IPKPSGLFSTLSSI-DFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKF 221
             IP        LS I D +HNN  GS+P E+G L N  E     + LS E P T+G     
Sbjct:   462 IPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIVEFHADSNKLSGENPSTIGECQLL 521

Query:   222 EHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEG 281
             +HL L  N   G IP      KG   L+LS NNLSG IP  L                 G
Sbjct:   522 QHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPMSLGDMPLLHSLNLSFNSFHG 581

Query:   282 QLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHH---LGTKIYSYNSLW 338
             ++P+  VF N S I I GN  +CGG+PEL L +C+++S KK+ H    L   I   ++L 
Sbjct:   582 EVPTNGVFANASEIYIQGNAHICGGIPELHLPTCSLKSRKKKKHQILLLVVVICLVSTL- 640

Query:   339 GCLFDILIMLSVGVFQXXXXXXXXXXXXXGEEFLRIPYDELLRATDGSS 387
               +F +L ML +   +             G     I Y +L++ATDG S
Sbjct:   641 -AVFSLLYML-LTCHKRRKKEVPATTSMQGHPM--ITYKQLVKATDGFS 685

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 4.8e-49, Sum P(3) = 4.8e-49
 Identities = 114/323 (35%), Positives = 155/323 (47%)

Query:     1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
             G +P E+G L  L+ LN  N+++ GEIPS L   S+L YLSL +N L G+IP SL    N
Sbjct:   229 GTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGN 288

Query:    61 LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPL 119
             L T    LD   N   G+IP        L+ L L  N L+GS+P SI     NL++L   
Sbjct:   289 LQT----LDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLS 344

Query:   120 ATSL-----------YSF-QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSI-PKP 166
              T L            S  QL+L+ N+L G+IPE+L  L  L  L L  N L G++ P  
Sbjct:   345 GTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSI 404

Query:   167 SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLL 226
             S L + L  +   HNN  G LP E+ +L   + L   E+  S EIP  +GN +  + + +
Sbjct:   405 SNL-TNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDM 463

Query:   227 GGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSM 286
              GN F+G IPP  G  K    L+L  N L G +P  L                 G +PS 
Sbjct:   464 FGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSS 523

Query:   287 SVFTNTSVISIVGNGKLCGGVPE 309
               F       ++ N  L G +P+
Sbjct:   524 FGFLKGLEQLMLYNNSLQGNLPD 546

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
 Identities = 116/328 (35%), Positives = 165/328 (50%)

Query:     1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
             G +P+EIGNL  L  L   ++   G IP  +S  + L  L ++SN+L G IP  +     
Sbjct:   493 GPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKL 552

Query:    61 LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
             LS    +LD   N+F+G IPA   K  +L  L L  N   GSIP S   L++L  LN   
Sbjct:   553 LS----VLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPAS---LKSLSLLN--- 602

Query:   121 TSLYSFQLNLAENNLTGNIP-ESLENLTSLQI-LNLSCNHLGGSIPKPSGLFSTLSSIDF 178
                 +F  ++++N LTG IP E L +L ++Q+ LN S N L G+IPK  G    +  ID 
Sbjct:   603 ----TF--DISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDL 656

Query:   179 AHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITL-GNRSKFEHLLLGGNMFQGRIPP 237
             ++N F+GS+P  + +  N   LDFS++ LS  IP  +         L L  N F G IP 
Sbjct:   657 SNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQ 716

Query:   238 FFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSVFTNTSVISI 297
              FG+    + L+LS NNL+G IP+ L                +G +P   VF N +   +
Sbjct:   717 SFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDL 776

Query:   298 VGNGKLCGGVPELRLLSCAIESSKKQIH 325
             +GN  LCG    L+   C I+  +K  H
Sbjct:   777 MGNTDLCGSKKPLK--PCTIK--QKSSH 800

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
 Identities = 95/316 (30%), Positives = 151/316 (47%)

Query:     7 IGNLFRLQNLNFGNSTVQGEIPSHLSPTS-KLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
             + N   LQ L    +++ GEI S +   S  L  + L  N +HG IPP + +  NL+   
Sbjct:   268 LANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRIHGSIPPEISNLLNLT--- 324

Query:    66 RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPLAT 121
              +L+   N  +G IP  + K   L ++ L  N L G IP  +G +  L  L    N L+ 
Sbjct:   325 -LLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSG 383

Query:   122 SLY-SF-------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP--SGLFS 171
             S+  SF       +L L  N+L+G +P+SL    +L+IL+LS N+L G+IP    S L +
Sbjct:   384 SIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRN 443

Query:   172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMF 231
                 ++ + N+ +G +PLE+  +     +D S + LS +IP  LG+    EHL L  N F
Sbjct:   444 LKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGF 503

Query:   232 QGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSVFTN 291
                +P   G      +L++S N L+G IP   +                G +     F+ 
Sbjct:   504 SSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSK 563

Query:   292 TSVISIVGNGKLCGGV 307
              ++ S +G+  LCG +
Sbjct:   564 LTIESFLGDSLLCGSI 579

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01420001 hypothetical protein (774 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	614
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-25
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	6e-09
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	6e-08
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-07
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	9e-07
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-06
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-06
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	3e-06
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	3e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	8e-05
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	2e-04
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-04
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	7e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	7e-04
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	0.002
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	0.002
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	0.002
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  169 bits (430), Expect = 2e-44
 Identities = 110/318 (34%), Positives = 164/318 (51%), Gaps = 17/318 (5%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +P+ +  L  L+ L+  ++   G+IP  L+   +L  L L+SN   G IP +L    N
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL---- 116
           L+    +LD   N   G+IP G+    NL +L L  N L G IP S+G  ++L+++    
Sbjct: 358 LT----VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 117 NPLATSLYS--------FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG 168
           N  +  L S        + L+++ NNL G I     ++ SLQ+L+L+ N   G +P   G
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG 228
               L ++D + N F+G++P ++GSLS   +L  SE+ LS EIP  L +  K   L L  
Sbjct: 474 S-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSV 288
           N   G+IP  F        L+LS N LSG IPK L  +  L  +N+S N+  G LPS   
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592

Query: 289 FTNTSVISIVGNGKLCGG 306
           F   +  ++ GN  LCGG
Sbjct: 593 FLAINASAVAGNIDLCGG 610

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  158 bits (401), Expect = 1e-40
 Identities = 106/301 (35%), Positives = 152/301 (50%), Gaps = 19/301 (6%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
           N  R+ +++     + G+I S +     +  ++L +N L G IP   D     S+ LR L
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP---DDIFTTSSSLRYL 123

Query: 69  DAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQL 128
           +   N F G IP G     NL  L L  N L+G IP  IG   +L+             L
Sbjct: 124 NLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLK------------VL 169

Query: 129 NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP 188
           +L  N L G IP SL NLTSL+ L L+ N L G IP+  G   +L  I   +NN +G +P
Sbjct: 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Query: 189 LEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL 248
            E+G L++   LD   + L+  IP +LGN    ++L L  N   G IPP   S +  I L
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 249 NLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP-SMSVFTNTSVISIVGNGKLCGGV 307
           +LS N+LSG IP+ +  L  LE L+L  NNF G++P +++      V+ +  N K  G +
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN-KFSGEI 348

Query: 308 P 308
           P
Sbjct: 349 P 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  140 bits (355), Expect = 7e-35
 Identities = 103/284 (36%), Positives = 143/284 (50%), Gaps = 18/284 (6%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G++P+  G++  L+ L+  N+ + GEIP+ +   S L  L L  N L G IP SL   TN
Sbjct: 132 GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL---TN 186

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
           L T L  L    NQ  G IP  + +  +L  + L  N L+G IP+ IG L +L       
Sbjct: 187 L-TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN------ 239

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
                  L+L  NNLTG IP SL NL +LQ L L  N L G IP        L S+D + 
Sbjct: 240 ------HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
           N+ +G +P  V  L N + L    +  + +IP+ L +  + + L L  N F G IP   G
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP 284
                  L+LS NNL+G IP+ L +   L  L L  N+ EG++P
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (275), Expect = 5e-25
 Identities = 81/253 (32%), Positives = 125/253 (49%), Gaps = 17/253 (6%)

Query: 60  NLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
           N S+++  +D  G   +G I + I +   +  + L  N L+G IP  I            
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI------------ 113

Query: 120 ATSLYSFQ-LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDF 178
            T+  S + LNL+ NN TG+IP    ++ +L+ L+LS N L G IP   G FS+L  +D 
Sbjct: 114 FTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171

Query: 179 AHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPF 238
             N   G +P  + +L++ + L  + + L  +IP  LG     + + LG N   G IP  
Sbjct: 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231

Query: 239 FGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISI- 297
            G       L+L +NNL+G IP  L  L  L+ L L  N   G +P  S+F+   +IS+ 
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLD 290

Query: 298 VGNGKLCGGVPEL 310
           + +  L G +PEL
Sbjct: 291 LSDNSLSGEIPEL 303

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 36/127 (28%)

Query: 92  LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQI 151
           LGLD   L G IP  I KL++LQ             +NL+ N++ GNIP SL ++TSL++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQ------------SINLSGNSIRGNIPPSLGSITSLEV 470

Query: 152 LNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEI 211
           L+LS                        +N+FNGS+P  +G L++ + L+ + + LS  +
Sbjct: 471 LDLS------------------------YNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 212 PITLGNR 218
           P  LG R
Sbjct: 507 PAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 9e-11
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 12/92 (13%)

Query: 77  GDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLT 136
           G IP  I K  +L  + L  N + G+IP S+G + +L+             L+L+ N+  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------------VLDLSYNSFN 479

Query: 137 GNIPESLENLTSLQILNLSCNHLGGSIPKPSG 168
           G+IPESL  LTSL+ILNL+ N L G +P   G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 8e-10
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 16  LNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQF 75
           L   N  ++G IP+ +S    L  ++L  N++ G IPPSL S T+L     +LD   N F
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE----VLDLSYNSF 478

Query: 76  AGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIG 108
            G IP  + +  +L  L L+ N L+G +P ++G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 44/181 (24%), Positives = 60/181 (33%), Gaps = 54/181 (29%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           L  E+   G L   L       RL   E       I                  P N+LL
Sbjct: 74  LVMEYCEGGDLFDLLKKR---GRLSEDEARFYLRQILSALEYLHSKGIVHRDLKPENILL 130

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--EWVARYQHKGKGY--- 494
           D D    + DFGLAR L          +  +    G+  Y M  E +      GKGY   
Sbjct: 131 DEDGHVKLADFGLARQLDPG------EKLTTFV--GTPEY-MAPEVL-----LGKGYGKA 176

Query: 495 ----SCGILLLEIMTGKRP------TDEMFADCLSLHN---FCEMALPESVMELVYSRLL 541
               S G++L E++TGK P        E+F             E  +     +L+  +LL
Sbjct: 177 VDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLI-RKLL 235

Query: 542 Q 542
            
Sbjct: 236 V 236

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 70/260 (26%), Positives = 106/260 (40%), Gaps = 23/260 (8%)

Query: 28  PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF 87
            S L   + LT L L +NN+  I P        L + L+ LD   N+    +P+ +    
Sbjct: 109 ISELLELTNLTSLDLDNNNITDIPPLI----GLLKSNLKELDLSDNKIE-SLPSPLRNLP 163

Query: 88  NLIQLGLDRNCLAGSIPFSIGKLQNLQKLN----------PLATSLYSFQLNLAENNLTG 137
           NL  L L  N L+  +P  +  L NL  L+          P    L + +     NN   
Sbjct: 164 NLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII 222

Query: 138 NIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNT 197
            +  SL NL +L  L LS N     +P+  G  S L ++D ++N    S    +GSL+N 
Sbjct: 223 ELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNN--QISSISSLGSLTNL 279

Query: 198 QELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSG 257
           +ELD S + LS+ +P+        E  LL   +               ++ N+  N    
Sbjct: 280 RELDLSGNSLSNALPLIALLLLLLE--LLLNLLLTL-KALELKLNSILLNNNILSNGE-T 335

Query: 258 TIPKELETLPFLENLNLSFN 277
           + P+ L  L  L NL    N
Sbjct: 336 SSPEALSILESLNNLWTLDN 355

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 219 SKFEHLL---LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLS 275
           SK  HL    L GN  +G IPP  GS      L+LS+N+ +G+IP+ L  L  L  LNL+
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 276 FNNFEGQLPSM--SVFTNTSVISIVGNGKLCGGVPELR 311
            N+  G++P+       + +  +   N  LC G+P LR
Sbjct: 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC-GIPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 4e-09
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +P +I  L  LQ++N   ++++G IP  L   + L  L L  N+ +G IP SL   T+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 61  LSTKLRILDAGGNQFAGDIPAGI 83
               LRIL+  GN  +G +PA +
Sbjct: 492 ----LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 34/135 (25%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           L  E+   G L  +L        L   E  KIA+ I                  P N+LL
Sbjct: 75  LVMEYCEGGDLFDYLSRG---GPLSEDEAKKIALQILRGLEYLHSNGIIHRDLKPENILL 131

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--EWVARYQHKGKG---Y 494
           D +    + DFGLA+ L  +        S +  V G+  Y M  E +      G     +
Sbjct: 132 DENGVVKIADFGLAKKLLKS------SSSLTTFV-GTPWY-MAPEVLLGGNGYGPKVDVW 183

Query: 495 SCGILLLEIMTGKRP 509
           S G++L E++TGK P
Sbjct: 184 SLGVILYELLTGKPP 198

Length = 260

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 45/201 (22%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 398 LAFEFMPNGSLESWL------HPNEATRRLDLAEGLKIAVDIPS---------------- 435
           L  E+M  G L  +L       P+     L L + L  A+ I                  
Sbjct: 73  LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLA 132

Query: 436 --NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVW---GSIGYNMEWVARYQHK 490
             N L+  D+   + DFGL+R +  +     K        W    S+         +  K
Sbjct: 133 ARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDG-----IFTSK 187

Query: 491 GKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCE-------MALPESVMELVYSRLLQ 542
              +S G+LL EI T G  P   +     S     E       +  PE   + +Y  +L 
Sbjct: 188 SDVWSFGVLLWEIFTLGATPYPGL-----SNEEVLEYLRKGYRLPKPEYCPDELYELMLS 242

Query: 543 GVDKDAEDEPCMKAKIRECLT 563
               D ED P     + E L 
Sbjct: 243 CWQLDPEDRPTFSE-LVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 50/196 (25%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E+MP G L  +L  +    +L L + L++A+ I                    N L+  
Sbjct: 80  TEYMPGGDLLDFLRKHG--EKLTLKDLLQMALQIAKGMEYLESKNFVHRDLAARNCLVTE 137

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGY 494
           ++   + DFGL+R +  +     +G              ++W+A       ++  K   +
Sbjct: 138 NLVVKISDFGLSRDIYEDDYYRKRGGGKL---------PIKWMAPESLKDGKFTSKSDVW 188

Query: 495 SCGILLLEIMT-GKRPTDEMFADCLSLHNFCE-------MALPESVMELVYSRLLQGVDK 546
           S G+LL EI T G++P   M     S     E       +  PE+  + +Y  +LQ    
Sbjct: 189 SFGVLLWEIFTLGEQPYPGM-----SNEEVLELLEDGYRLPRPENCPDELYELMLQCWAY 243

Query: 547 DAEDEPCMKAKIRECL 562
           D ED P     + E L
Sbjct: 244 DPEDRPTFSE-LVEDL 258

Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 50.2 bits (121), Expect = 9e-07
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 45/193 (23%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY 441
            E+M  G L S+L  N    +L L++ L  A+ I                    N L+  
Sbjct: 80  MEYMEGGDLLSYLRKNR--PKLSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGE 137

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGY 494
           ++   + DFGL+R L  +     +G        G +     W+A       ++  K   +
Sbjct: 138 NLVVKISDFGLSRDLYDDDYYRKRG--------GKLPIR--WMAPESLKEGKFTSKSDVW 187

Query: 495 SCGILLLEIMT-GKRPTDEMFADCLSLHNFCE----MALPESVMELVYSRLLQGVDKDAE 549
           S G+LL EI T G++P   M      +  + +    +  P +    +Y  +LQ   +D E
Sbjct: 188 SFGVLLWEIFTLGEQPYPGM--SNEEVLEYLKNGYRLPQPPNCPPELYDLMLQCWAEDPE 245

Query: 550 DEPCMKAKIRECL 562
           D P    ++ E L
Sbjct: 246 DRPTFS-ELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 30/137 (21%)

Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
           EFM NG+L+S+L  N+    +         +A G+K   ++          N+L++ ++ 
Sbjct: 85  EFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLV 144

Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
             V DFGL+RFL  + ++P    + ++++ G I   + W A       ++      +S G
Sbjct: 145 CKVSDFGLSRFLEDDTSDP----TYTSSLGGKI--PIRWTAPEAIAYRKFTSASDVWSYG 198

Query: 498 ILLLEIMT-GKRPTDEM 513
           I++ E+M+ G+RP  +M
Sbjct: 199 IVMWEVMSYGERPYWDM 215

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 40/138 (28%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------P 434
            +   L  E+   GSL+  L  NE   +L   E L+I + I                  P
Sbjct: 63  ENHLYLVMEYCEGGSLKDLLKENE--GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKP 120

Query: 435 SNVLLDYD-MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG 493
            N+LLD D     + DFGL++ L ++ +              +I     ++A     GKG
Sbjct: 121 ENILLDSDNGKVKLADFGLSKLLTSDKSLLK-----------TIVGTPAYMAPEVLLGKG 169

Query: 494 --------YSCGILLLEI 503
                   +S G++L E+
Sbjct: 170 YYSEKSDIWSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 45/194 (23%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E M  GSL ++L   E  + L +A  + +A  +                    N+L+  D
Sbjct: 82  ELMEKGSLLAFLRSPEG-QVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGED 140

Query: 443 MTAYVGDFGLAR------FLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSC 496
           +   V DFGLAR      +L ++   P K  +  AA  G           +  K   +S 
Sbjct: 141 LVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHG----------TFSTKSDVWSF 190

Query: 497 GILLLEIMT-GKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAED 550
           GILL E+ T G+ P       E++        +  M  P    + +Y  +L+    + ED
Sbjct: 191 GILLYEMFTYGQVPYPGMNNHEVYD--QITAGY-RMPCPAKCPQEIYKIMLECWAAEPED 247

Query: 551 EPCMKAKIRECLTS 564
            P  KA +RE L +
Sbjct: 248 RPSFKA-LREELDN 260

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 44/193 (22%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY 441
            E+MP G L  +L  N     L L++ L  A+ I                    N L+  
Sbjct: 80  MEYMPGGDLLDYLRKNRPKE-LSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGE 138

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGY 494
           ++   + DFGL+R L  +    +KG        G +     W+A       ++  K   +
Sbjct: 139 NLVVKISDFGLSRDLYDDDYYKVKG--------GKLPIR--WMAPESLKEGKFTSKSDVW 188

Query: 495 SCGILLLEIMT-GKRPTDEMFADCLSLHNFCE----MALPESVMELVYSRLLQGVDKDAE 549
           S G+LL EI T G+ P   M      +  + +    +  P +    +Y  +LQ   +D E
Sbjct: 189 SFGVLLWEIFTLGEEPYPGM--SNAEVLEYLKKGYRLPKPPNCPPELYKLMLQCWAEDPE 246

Query: 550 DEPCMKAKIRECL 562
           D P     + E L
Sbjct: 247 DRPTFSE-LVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 232 QGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP-SMSVFT 290
           +G IP      +    +NLS N++ G IP  L ++  LE L+LS+N+F G +P S+   T
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 291 NTSVISIVGNGKLCGGVP 308
           +  ++++ GN  L G VP
Sbjct: 491 SLRILNLNGN-SLSGRVP 507

Length = 623

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 34/199 (17%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------P 434
                L  E++  GSLE  L        L  +E L I   I                  P
Sbjct: 70  EGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKP 129

Query: 435 SNVLLDYD-MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG 493
            N+LLD D     + DFGLA+ LP    +     +  +   G+ GY    V         
Sbjct: 130 ENILLDRDGRVVKLIDFGLAKLLPDP-GSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYA 188

Query: 494 ------YSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKD 547
                 +S GI L E++TG  P +         ++       + ++EL    L   +   
Sbjct: 189 SSSSDIWSLGITLYELLTGLPPFE------GEKNSSATSQTLKIILELPTPSLASPLSPS 242

Query: 548 --AEDEPCMKAKIRECLTS 564
                       +++ L  
Sbjct: 243 NPELISKAASDLLKKLLAK 261

Length = 384

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 213 ITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF-LEN 271
           IT  N S+   + L G    G+I            +NLS+N LSG IP ++ T    L  
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 272 LNLSFNNFEGQLPSMSVF 289
           LNLS NNF G +P  S+ 
Sbjct: 123 LNLSNNNFTGSIPRGSIP 140

Length = 968

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 41/181 (22%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E M  GSL  +L    A R L L + + +A  + S                  NVL+  +
Sbjct: 81  ELMKYGSLLEYLQ-GGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGEN 139

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYS 495
               V DFGLAR +  ++    +G            + ++W A       R+  K   +S
Sbjct: 140 NICKVADFGLARVIKEDIYEAREG----------AKFPIKWTAPEAALYNRFSIKSDVWS 189

Query: 496 CGILLLEIMT-GKRPTDEMF-ADCLSL--HNFCEMALPESVMELVYSRLLQGVDKDAEDE 551
            GILL EI+T G+ P   M  A+ L      +  M  P    + +Y  +L    +D +D 
Sbjct: 190 FGILLTEIVTYGRMPYPGMTNAEVLQQVDQGY-RMPCPPGCPKELYDIMLDCWKEDPDDR 248

Query: 552 P 552
           P
Sbjct: 249 P 249

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 21/108 (19%)

Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
           E LR  Y E +    G   + GGN  K L  EF+P+GSL+ +L  N+   +++L + LK 
Sbjct: 58  EILRNLYHENIVKYKGICTEDGGNGIK-LIMEFLPSGSLKEYLPRNKN--KINLKQQLKY 114

Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTN 459
           AV I                    NVL++ +    +GDFGL + + T+
Sbjct: 115 AVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETD 162

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 39/180 (21%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E+M  GSL  +L   E  ++L L + + +A  I                    N+L+  +
Sbjct: 81  EYMSKGSLLDFLKSGEG-KKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGEN 139

Query: 443 MTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
           +   + DFGLAR +  +          P+K  +  AA +G          R+  K   +S
Sbjct: 140 LVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYG----------RFTIKSDVWS 189

Query: 496 CGILLLEIMT-GKRPTDEMF-ADCL-SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
            GILL EI+T G+ P   M   + L  +     M  P +  E +Y  +LQ  DKD E+ P
Sbjct: 190 FGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERP 249

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 37/179 (20%)

Query: 401 EFMPNGSLESWLHPNEATRRL---------DLAEGLK-------IAVDI-PSNVLLDYDM 443
           E+M  GSL  +L  +E  + L          +AEG+        I  D+  +NVL+   +
Sbjct: 81  EYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESL 140

Query: 444 TAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSC 496
              + DFGLAR +  N          P+K  +  A  +GS          +  K   +S 
Sbjct: 141 MCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS----------FTIKSDVWSF 190

Query: 497 GILLLEIMT-GKRPTDEMF-ADCLS-LHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
           GILL EI+T GK P   M  +D +S L     M   E+  + +Y  +     + AE+ P
Sbjct: 191 GILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERP 249

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 16/84 (19%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
           DI P N+LLD     ++ DF +A  +           + + +  G+ GY    V     +
Sbjct: 125 DIKPDNILLDEQGHVHITDFNIATKVTP--------DTLTTSTSGTPGYMAPEV--LCRQ 174

Query: 491 GKG-----YSCGILLLEIMTGKRP 509
           G       +S G+   E + GKRP
Sbjct: 175 GYSVAVDWWSLGVTAYECLRGKRP 198

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 63/219 (28%), Positives = 90/219 (41%), Gaps = 29/219 (13%)

Query: 105 FSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIP 164
            S   + +L     L   L    L+L  N L  NI E L  LT+L  L+L  N++   IP
Sbjct: 75  LSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNI-TDIP 132

Query: 165 KPSGLF-STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD-------------- 209
              GL  S L  +D + N    SLP  + +L N + LD S + LSD              
Sbjct: 133 PLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191

Query: 210 --------EIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK 261
                   ++P  +   S  E L L  N     +     + K    L LS+N L   +P+
Sbjct: 192 DLSGNKISDLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLE-DLPE 249

Query: 262 ELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
            +  L  LE L+LS NN    + S+   TN   + + GN
Sbjct: 250 SIGNLSNLETLDLS-NNQISSISSLGSLTNLRELDLSGN 287

Length = 394

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 38/133 (28%), Positives = 51/133 (38%), Gaps = 35/133 (26%)

Query: 401 EFMPNGSLESWLH----PNEATRRL---DLAEGLK-------IAVDI-PSNVLLDYDMTA 445
           E++  GSL S L       E   R     + EGL        +  DI  +N+L+D D   
Sbjct: 81  EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVV 140

Query: 446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--EWVARYQHKGKGY-------SC 496
            + DFG A+ L    T    G       W      M  E V R    G+ Y       S 
Sbjct: 141 KLADFGCAKRLGDIETGEGTGSVRGTPYW------MAPE-VIR----GEEYGRAADIWSL 189

Query: 497 GILLLEIMTGKRP 509
           G  ++E+ TGK P
Sbjct: 190 GCTVIEMATGKPP 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 21/92 (22%)

Query: 385 GSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS--------- 435
           G     GG   + L  E++P+GSL  +L  +    +++L   L  +  I           
Sbjct: 73  GVCEKPGGRSLR-LIMEYLPSGSLRDYLQRHRD--QINLKRLLLFSSQICKGMDYLGSQR 129

Query: 436 ---------NVLLDYDMTAYVGDFGLARFLPT 458
                    N+L++ +    + DFGLA+ LP 
Sbjct: 130 YIHRDLAARNILVESEDLVKISDFGLAKVLPE 161

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 39/180 (21%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E+M  GSL  +L   E  + L L + + +A  I S                  N+L+  +
Sbjct: 80  EYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 138

Query: 443 MTAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYS 495
           +   V DFGLAR +  N          P+K  +  AA++G          R+  K   +S
Sbjct: 139 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG----------RFTIKSDVWS 188

Query: 496 CGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
            GILL E+ T G+ P   M    +   +     M  P    E ++  + Q   K+ E+ P
Sbjct: 189 FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERP 248

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 37/179 (20%)

Query: 401 EFMPNGSLESWLHPNEATRR---------LDLAEGLK-------IAVDI-PSNVLLDYDM 443
           EFM  GSL  +L  +E +++           +AEG+        I  D+  +N+L+   +
Sbjct: 80  EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASL 139

Query: 444 TAYVGDFGLARFLPTN-------VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSC 496
              + DFGLAR +  N          P+K  +  A  +GS          +  K   +S 
Sbjct: 140 VCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS----------FTIKSDVWSF 189

Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
           GILL+EI+T G+ P   M    +  +L     M  PE+  E +Y+ +++      E+ P
Sbjct: 190 GILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERP 248

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 36/139 (25%)

Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
           E+M NGSL+++L  ++    +         +A G+K   D+          N+L++ ++ 
Sbjct: 85  EYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLV 144

Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--EWVA-------RYQHKGKGYS 495
             V DFGL+R L          + +  A + + G  +   W A       ++      +S
Sbjct: 145 CKVSDFGLSRVL----------EDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWS 194

Query: 496 CGILLLEIMT-GKRPTDEM 513
            GI++ E+M+ G+RP  EM
Sbjct: 195 YGIVMWEVMSYGERPYWEM 213

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 38/143 (26%)

Query: 400 FEFMPNGSLESWL-----------HPNEATRRLDLAEGLKIAVDIPS------------- 435
           FE+M +G L  +L            P+     L L++ L+IAV I S             
Sbjct: 87  FEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHR 146

Query: 436 -----NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVW---GSIGYNMEWVARY 487
                N L+ YD+   +GDFG++R + T     + G +     W    SI Y      ++
Sbjct: 147 DLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYR-----KF 201

Query: 488 QHKGKGYSCGILLLEIMT-GKRP 509
             +   +S G++L EI T GK+P
Sbjct: 202 TTESDVWSFGVVLWEIFTYGKQP 224

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 26/154 (16%)

Query: 385 GSSMDSGGNDFKALAFEFMPNGSLESWLHP----NEATRRLDLAEGLK----------IA 430
           GSS+D+   D   +  E++P GS+ + L+      E   R  + + LK          I 
Sbjct: 73  GSSLDA---DHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIH 129

Query: 431 VDIP-SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR--- 486
            DI  +N+L+D      + DFG+++ L  N  +  K      ++ GS+ +    V +   
Sbjct: 130 RDIKGANILVDNKGGIKISDFGISKKLEANSLS-TKTNGARPSLQGSVFWMAPEVVKQTS 188

Query: 487 YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL 520
           Y  K   +S G L++E++TGK P    F DC  L
Sbjct: 189 YTRKADIWSLGCLVVEMLTGKHP----FPDCTQL 218

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 25/118 (21%)

Query: 361 PSLRSSLGEEF--LRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEAT 418
               S   +E   L+  Y E +    G   + GG   + L  E++P GSL  +L  +   
Sbjct: 47  QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQ-LIMEYVPLGSLRDYLPKH--- 102

Query: 419 RRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPT 458
            +L+LA+ L  A  I                    NVLLD D    +GDFGLA+ +P 
Sbjct: 103 -KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE 159

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	614
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.98
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.93
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.91
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.89
PHA02988	283	hypothetical protein; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.87
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.86
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.85
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
KOG0578	550	consensus p21-activated serine/threonine protein k	99.84
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.84
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.84
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.83
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.83
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.83
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.83
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.83
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.83
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.83
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.82
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.82
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.82
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.82
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.82
KOG0198	313	consensus MEKK and related serine/threonine protei	99.82
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.82
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.82
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.82
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.82
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.81
PTZ00267	478	NIMA-related protein kinase; Provisional	99.81
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.81
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.81
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.81
PTZ00283	496	serine/threonine protein kinase; Provisional	99.81
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.81
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.81
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.81
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.81
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.81
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.81
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.81
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.81
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.81
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.81
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.81
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.81
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.8
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.8
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.8
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.8
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.8
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.8
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.8
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.8
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.8
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.8
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.8
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.8
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.8
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.8
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.8
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.8
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.8
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.8
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.79
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.79
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.79
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.79
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.79
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.79
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.79
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.79
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.79
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.79
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.79
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.79
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.79
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.79
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.79
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.79
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.79
KOG0589	426	consensus Serine/threonine protein kinase [General	99.79
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.79
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.79
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.79
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.79
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.79
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.79
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.79
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.78
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.78
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.78
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.78
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.78
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.78
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.78
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.78
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.78
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.78
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.78
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.78
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.78
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.78
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.78
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.78
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.78
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.78
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.78
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.78
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.77
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.77
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.77
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.77
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.77
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.77
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.77
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.77
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.77
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.77
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.77
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.77
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.77
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.77
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.77
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.77
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.77
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.77
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.77
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.77
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.77
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.77
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.77
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.77
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.77
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.77
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.77
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.77
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.77
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.77
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.77
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.76
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.76
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.76
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.76
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.76
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.76
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.76
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.76
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.76
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.76
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.76
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.76
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.76
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.76
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.76
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.76
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.76
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.76
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.76
KOG3653	534	consensus Transforming growth factor beta/activin	99.76
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.76
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.75
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.75
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.75
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.75
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.75
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.75
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.75
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.75
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.75
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.75
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.75
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.75
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.75
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.75
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.75
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.75
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.75
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.75
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.75
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.75
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.74
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.74
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.74
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.74
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.74
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.74
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.74
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.74
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.74
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.74
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.74
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.74
PHA03212	391	serine/threonine kinase US3; Provisional	99.74
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.74
KOG0605	550	consensus NDR and related serine/threonine kinases	99.74
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.74
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.74
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.74
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.74
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.74
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.74
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.73
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.73
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.73
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.73
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.73
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.73
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.73
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.73
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.73
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.73
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.73
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.73
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.73
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.73
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.73
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.73
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.73
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.73
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.73
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.73
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.72
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.72
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.72
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.72
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.72
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.72
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.72
PTZ00036	440	glycogen synthase kinase; Provisional	99.72
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.72
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.72
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.72
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.72
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.72
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.72
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.72
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.72
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.72
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.72
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.72
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.72
PHA03211	461	serine/threonine kinase US3; Provisional	99.72
PHA03207	392	serine/threonine kinase US3; Provisional	99.72
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.72
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.72
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.72
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.72
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.72
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.71
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.71
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.71
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.71
PTZ00284	467	protein kinase; Provisional	99.71
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.71
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.71
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.71
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.71
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.71
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.71
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.71
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.71
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.71
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.71
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.71
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.71
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.71
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.71
PHA02882	294	putative serine/threonine kinase; Provisional	99.7
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.7
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.7
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.7
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.7
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.7
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.7
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.7
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.7
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.7
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.7
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.7
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.7
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.7
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.7
PHA03209	357	serine/threonine kinase US3; Provisional	99.7
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.69
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.69
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.69
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.69
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.69
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.69
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.69
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.69
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.69
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.69
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.69
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.69
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.69
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.69
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.69
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.69
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.69
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.68
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.68
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.68
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.68
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.68
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.68
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.68
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.68
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.68
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.68
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.67
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.67
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.67
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.67
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.67
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.67
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.67
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.67
KOG0584	632	consensus Serine/threonine protein kinase [General	99.67
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.67
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.67
KOG0610	459	consensus Putative serine/threonine protein kinase	99.67
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.67
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.66
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.66
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.66
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.66
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.66
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.66
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.65
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.65
PLN00009	294	cyclin-dependent kinase A; Provisional	99.65
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.65
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.65
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.65
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.65
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.64
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.64
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.64
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.64
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.64
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.64
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.64
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.64
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.64
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.64
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.64
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.64
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.63
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.63
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.63
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.62
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.62
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.62
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.62
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.62
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.62
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.62
PLN00181	793	protein SPA1-RELATED; Provisional	99.6
PHA03210	501	serine/threonine kinase US3; Provisional	99.6
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.59
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.59
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.59
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.58
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.57
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.57
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.57
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.56
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.56
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.56
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.56
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.53
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.53
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.52
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.5
KOG0586	596	consensus Serine/threonine protein kinase [General	99.5
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.49
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.49
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.48
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.47
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.44
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.44
PLN03150	623	hypothetical protein; Provisional	99.42
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.39
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.35
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.31
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.24
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.23
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.21
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.2
PLN03150	623	hypothetical protein; Provisional	99.19
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.19
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.14
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.14
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.14
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.81
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.77
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.69
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.57
KOG1152	772	consensus Signal transduction serine/threonine kin	98.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.5
KOG1290	590	consensus Serine/threonine protein kinase [Signal	98.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.48
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.47
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.46
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.23
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.06
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	98.05
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.01
PRK15386	426	type III secretion protein GogB; Provisional	97.99
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	97.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.81
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.77
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.76
PRK09188	365	serine/threonine protein kinase; Provisional	97.73
PRK12274	218	serine/threonine protein kinase; Provisional	97.69
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.43
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	97.38
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	97.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.27
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.26
KOG1266	458	consensus Protein kinase [Signal transduction mech	97.1
COG4248	637	Uncharacterized protein with protein kinase and he	96.9
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	96.86
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.74
KOG0606	1205	consensus Microtubule-associated serine/threonine	96.67
PRK14879	211	serine/threonine protein kinase; Provisional	96.59
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.59
smart00090	237	RIO RIO-like kinase.	96.4
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	96.36
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	96.33
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	96.23
PRK09605	535	bifunctional UGMP family protein/serine/threonine	96.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.5e-64  Score=586.54  Aligned_cols=557  Identities=27%  Similarity=0.399  Sum_probs=381.9

Q ss_pred             CCCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCC
Q 046036            1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP   80 (614)
Q Consensus         1 g~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p   80 (614)
                      |.+|.++.++++|++|+|++|.+++.+|..+.++++|++|++++|.+++.+|..   +..++ +|+.|+|++|.+++.+|
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~-~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA---LTSLP-RLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh---HhcCC-CCCEEECcCCCCcCcCC
Confidence            456777778888888888888888777877777888888888888877777766   55565 77777777777777777


Q ss_pred             CCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc------------ccceEecCCCccccccchhhhccCC
Q 046036           81 AGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL------------YSFQLNLAENNLTGNIPESLENLTS  148 (614)
Q Consensus        81 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~------------~l~~L~L~~N~l~~~~~~~~~~l~~  148 (614)
                      ..++.+++|+.|+|++|++++.+|..+..+.+|+.|++..+.+            +++.|+|++|++++.+|..|..+++
T Consensus       350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~  429 (968)
T PLN00113        350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL  429 (968)
T ss_pred             hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence            7777777777777777777766666666666666665522211            4455555555555555555555555


Q ss_pred             CCeeecccccCCCCCCCCCCC-----------------------CCCCCEEEcCCCCCccCCcccccCCCCCceeccCCc
Q 046036          149 LQILNLSCNHLGGSIPKPSGL-----------------------FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEH  205 (614)
Q Consensus       149 L~~L~L~~N~l~~~~p~~~~~-----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  205 (614)
                      |+.|++++|.+++.+|..+..                       .++|+.|++++|++++.+|..+..+++|+.|+|++|
T Consensus       430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  509 (968)
T PLN00113        430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN  509 (968)
T ss_pred             CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence            555555555555444433333                       356677777777777777878888888888999999


Q ss_pred             cCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC
Q 046036          206 MLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS  285 (614)
Q Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  285 (614)
                      .+.+.+|..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus       510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            88888888888899999999999999988999999999999999999999988999888899999999999999999998


Q ss_pred             ccccCCCceEEEecCCCcccCCCCccccccccccccccccccccccccccccchhhHHHHHHHHhhhhhcccCC---CC-
Q 046036          286 MSVFTNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPR---RP-  361 (614)
Q Consensus       286 ~~~~~~l~~~~~~~N~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~---~~-  361 (614)
                      .+.+..+....+.||+.+|+..+....++|....   ... ...  +.++..+++++.+++++++++++++|++   +. 
T Consensus       590 ~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~---~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (968)
T PLN00113        590 TGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVR---KTP-SWW--FYITCTLGAFLVLALVAFGFVFIRGRNNLELKRV  663 (968)
T ss_pred             cchhcccChhhhcCCccccCCccccCCCCCcccc---ccc-eee--eehhHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            8888888888889999999876544455664221   111 111  1122222222222222222333332211   00 


Q ss_pred             C-CCC-cc-----cccccccchHHHHHhhcC-------------------------------------------------
Q 046036          362 S-LRS-SL-----GEEFLRIPYDELLRATDG-------------------------------------------------  385 (614)
Q Consensus       362 ~-~~~-~~-----~~~~~~~~~~~l~~at~~-------------------------------------------------  385 (614)
                      . ... ..     ......++++++..+...                                                 
T Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~Hp  743 (968)
T PLN00113        664 ENEDGTWELQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHP  743 (968)
T ss_pred             ccccccccccccccccchhhhHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccccHHHHHHHhhCCCC
Confidence            0 000 00     000112233333222111                                                 


Q ss_pred             ----CCCCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC---------------------CCceeeC
Q 046036          386 ----SSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------------PSNVLLD  440 (614)
Q Consensus       386 ----~~~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i---------------------~~NILld  440 (614)
                          ....+..++..++|||||++|+|.++++      .++|.++.+|+.|+                     |+||++|
T Consensus       744 nIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~  817 (968)
T PLN00113        744 NIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIID  817 (968)
T ss_pred             CcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEEC
Confidence                0112334566899999999999999996      28999999988877                     8999999


Q ss_pred             CCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccC
Q 046036          441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADC  517 (614)
Q Consensus       441 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~  517 (614)
                      .++.+++. ||.+......           ....||++|+| |+  ...++.|+|||||||++|||+||+.||+......
T Consensus       818 ~~~~~~~~-~~~~~~~~~~-----------~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~  885 (968)
T PLN00113        818 GKDEPHLR-LSLPGLLCTD-----------TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVH  885 (968)
T ss_pred             CCCceEEE-eccccccccC-----------CCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCC
Confidence            99999886 6665443221           12368899977 87  6679999999999999999999999997665555


Q ss_pred             chHHHHHHhhCCCC-hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          518 LSLHNFCEMALPES-VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       518 ~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                      ..+..|++...... ....+|+.+.....           ...+++.++.+++.+||+.+|++||+|+||+++|+++.+.
T Consensus       886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~  954 (968)
T PLN00113        886 GSIVEWARYCYSDCHLDMWIDPSIRGDVS-----------VNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRS  954 (968)
T ss_pred             CcHHHHHHHhcCccchhheeCccccCCCC-----------ccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhcc
Confidence            66777877655432 23333333322110           0134566788999999999999999999999999987653

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-36  Score=306.16  Aligned_cols=188  Identities=32%  Similarity=0.506  Sum_probs=154.2

Q ss_pred             CCCCCCCC-ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC---------------------CCceeeCCCCC
Q 046036          387 SMDSGGND-FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------------PSNVLLDYDMT  444 (614)
Q Consensus       387 ~~~~~~~~-~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i---------------------~~NILld~~~~  444 (614)
                      .++|.+.+ +.+||||||+||||.++|++.... .++|.+|++||.|+                     |+|||||++++
T Consensus       137 lGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~  215 (361)
T KOG1187|consen  137 LGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFN  215 (361)
T ss_pred             EEEEecCCceEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCC
Confidence            34566666 599999999999999999986543 89999999999999                     89999999999


Q ss_pred             eeecccccccccCC-CCCCCCCCCcCcccc-cccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCccc-ccCc
Q 046036          445 AYVGDFGLARFLPT-NVTNPMKGQSNSAAV-WGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMF-ADCL  518 (614)
Q Consensus       445 ~kl~DfGla~~~~~-~~~~~~~~~~~~~~~-~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~-~~~~  518 (614)
                      |||+|||+|+.... ...        .... .||+||+| ||  .+..++|+||||||||++|++||++|.+... .+..
T Consensus       216 aKlsDFGLa~~~~~~~~~--------~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~  287 (361)
T KOG1187|consen  216 AKLSDFGLAKLGPEGDTS--------VSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGEL  287 (361)
T ss_pred             EEccCccCcccCCccccc--------eeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccc
Confidence            99999999977654 221        1112 89999976 88  6789999999999999999999999988643 3445


Q ss_pred             hHHHHHHhhCCC-ChHHHHHHHHhc-CcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          519 SLHNFCEMALPE-SVMELVYSRLLQ-GVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       519 ~l~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      .+..|+...... .+.+++|+.+.. ...            ..+++.+++++|+.|++.+|.+||+|.||+++|+.+..
T Consensus       288 ~l~~w~~~~~~~~~~~eiiD~~l~~~~~~------------~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~  354 (361)
T KOG1187|consen  288 SLVEWAKPLLEEGKLREIVDPRLKEGEYP------------DEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILS  354 (361)
T ss_pred             cHHHHHHHHHHCcchhheeCCCccCCCCC------------hHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhcc
Confidence            588998777766 478888888763 221            01678889999999999999999999999999966543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.5e-35  Score=342.06  Aligned_cols=277  Identities=34%  Similarity=0.574  Sum_probs=195.5

Q ss_pred             CCCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCC
Q 046036            1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP   80 (614)
Q Consensus         1 g~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p   80 (614)
                      |.+|..|+++++|++|+|++|.+.+.+|..|+++++|++|+|++|.+++.+|..   +.+++ +|++|+|++|++++.+|
T Consensus       154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~-~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE---LGQMK-SLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH---HcCcC-CccEEECcCCccCCcCC
Confidence            457888888888888888888888888888888888888888888888888877   66666 78888888888887888


Q ss_pred             CCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccc--------cc----ccceEecCCCccccccchhhhccCC
Q 046036           81 AGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT--------SL----YSFQLNLAENNLTGNIPESLENLTS  148 (614)
Q Consensus        81 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~--------~~----~l~~L~L~~N~l~~~~~~~~~~l~~  148 (614)
                      ..++++++|++|+|++|.+++.+|..++++++|+.|++..+        .+    +++.|+|++|.+++.+|..+.++++
T Consensus       230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  309 (968)
T PLN00113        230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN  309 (968)
T ss_pred             hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence            88888888888888888888888888888888888876222        22    5677778888877777777777777


Q ss_pred             CCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccC
Q 046036          149 LQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG  228 (614)
Q Consensus       149 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~  228 (614)
                      |++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus       310 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~  389 (968)
T PLN00113        310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS  389 (968)
T ss_pred             CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence            77777777777777777777777777777777777777777777777777777777766665555555555555555555


Q ss_pred             ccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcc
Q 046036          229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       229 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  281 (614)
                      |.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++
T Consensus       390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG  442 (968)
T ss_pred             CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence            55544444444444444444444444444444444444444444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.98  E-value=4.7e-34  Score=285.58  Aligned_cols=298  Identities=22%  Similarity=0.215  Sum_probs=201.4

Q ss_pred             CCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCC
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      ||.......+|+.|+|.+|.|+....+.++.++.|+.||||.|.|+.+.-.+   |..-. ++++|+|++|+|+..-.+.
T Consensus       117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s---fp~~~-ni~~L~La~N~It~l~~~~  192 (873)
T KOG4194|consen  117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS---FPAKV-NIKKLNLASNRITTLETGH  192 (873)
T ss_pred             cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC---CCCCC-CceEEeecccccccccccc
Confidence            4544444445666666666666666666666666666666666666333333   33333 5666666666666555555


Q ss_pred             CcCCCCCCEEeccCCcCcccCCccccCCCCCCcccc------------------------ccccc------------ccc
Q 046036           83 IPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP------------------------LATSL------------YSF  126 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l------------------------~~~~~------------~l~  126 (614)
                      |..+.+|..|.|++|+++...+..|.+|++|+.|+|                        -.+.+            .++
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence            666666666666666666444555555666666655                        22222            456


Q ss_pred             eEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCcc
Q 046036          127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHM  206 (614)
Q Consensus       127 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~  206 (614)
                      .|+|+.|+++..-..++.+|+.|+.|+||+|.|...-++.+...++|++|+|++|+|+...+.+|..+..|++|+|++|.
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            77788888877667777788888888888888877777777777888888888888887777778888888888888888


Q ss_pred             CCCCccccccCcccchHHhccCccccccCCc---cccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccC
Q 046036          207 LSDEIPITLGNRSKFEHLLLGGNMFQGRIPP---FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQL  283 (614)
Q Consensus       207 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  283 (614)
                      ++......|..+++|++|||++|.|++.+.+   .|.+|+.|+.|+|.+|+|..+.-.+|..++.|+.|||.+|.|...-
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence            8777777788888888888888888776654   4667888888888888888666677888888888888888887665


Q ss_pred             CCccccCCCceEEEecCCCcc
Q 046036          284 PSMSVFTNTSVISIVGNGKLC  304 (614)
Q Consensus       284 p~~~~~~~l~~~~~~~N~~~c  304 (614)
                      |....-..+..+.+..-..+|
T Consensus       433 ~nAFe~m~Lk~Lv~nSssflC  453 (873)
T KOG4194|consen  433 PNAFEPMELKELVMNSSSFLC  453 (873)
T ss_pred             ccccccchhhhhhhcccceEE
Confidence            543222255555555555555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-33  Score=282.35  Aligned_cols=272  Identities=21%  Similarity=0.184  Sum_probs=181.7

Q ss_pred             ccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCc
Q 046036            5 QEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIP   84 (614)
Q Consensus         5 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~   84 (614)
                      ..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+.+-.+.   +..++ .|+.||||.|.|+.+.-..|.
T Consensus        96 ~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~---L~~l~-alrslDLSrN~is~i~~~sfp  170 (873)
T KOG4194|consen   96 EFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEE---LSALP-ALRSLDLSRNLISEIPKPSFP  170 (873)
T ss_pred             HHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHH---HHhHh-hhhhhhhhhchhhcccCCCCC
Confidence            46788999999999999999 88876666778999999999999776666   77777 899999999999955556787


Q ss_pred             CCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc------------ccceEecCCCccccccchhhhccCCCCee
Q 046036           85 KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL------------YSFQLNLAENNLTGNIPESLENLTSLQIL  152 (614)
Q Consensus        85 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~------------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L  152 (614)
                      .-.++++|+|++|+|+......|.++.+|..|.|..+.+            .|+.|+|..|+|.-.---.|.+|++|+.|
T Consensus       171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL  250 (873)
T ss_pred             CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence            778999999999999988899999999999998744443            45667777777763334456666666666


Q ss_pred             ecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCcccc
Q 046036          153 NLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ  232 (614)
Q Consensus       153 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  232 (614)
                      .|..|.+...-...|..+.++++|+|+.|+++..-..++.+++.|+.|+||+|.|..+.+.++.-+++|++|+|++|+|+
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            66666666545555555556666666665555444444555555555555555555444555555555555555555555


Q ss_pred             ccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcc
Q 046036          233 GRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       233 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  281 (614)
                      ...+..|..+..|+.|+|++|.++..-...|..+.+|+.|||++|.++.
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~  379 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW  379 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence            4444444444444444444444443333444444444444444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2e-31  Score=268.42  Aligned_cols=280  Identities=25%  Similarity=0.372  Sum_probs=173.4

Q ss_pred             CCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCC
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      ||+++.++..|+.||||+|+++ +.|..+..-+++-.|+||+|+|. .||..+  |.+|. .|-.||||+|++. .+|..
T Consensus        95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~l--finLt-DLLfLDLS~NrLe-~LPPQ  168 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSL--FINLT-DLLFLDLSNNRLE-MLPPQ  168 (1255)
T ss_pred             CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchH--HHhhH-hHhhhccccchhh-hcCHH
Confidence            6666666666666777766666 66666666666666677766666 555554  55665 6666667666665 55556


Q ss_pred             CcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccc-cccchhhhccCCCCeeecccccCCC
Q 046036           83 IPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLT-GNIPESLENLTSLQILNLSCNHLGG  161 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~  161 (614)
                      +..+.+|++|.|++|.+.-.--..+..+++|++            |.+++.+-+ ..+|.++..|.+|..+|||.|.+. 
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v------------Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV------------LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcCccchhhhh------------hhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence            666666666676666654221112222333333            335555433 345666666666666666666666 


Q ss_pred             CCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCcccc-ccCCcccc
Q 046036          162 SIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ-GRIPPFFG  240 (614)
Q Consensus       162 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~  240 (614)
                      .+|..+-.+++|+.|+||+|.|+ .+....+...+|++|+||+|+++ .+|.++..+++|+.|++.+|+++ .-+|..++
T Consensus       236 ~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence            56666666666666666666666 44444555566666666666666 45666666666666666666654 23566666


Q ss_pred             CCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCcc
Q 046036          241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLC  304 (614)
Q Consensus       241 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c  304 (614)
                      .+.+|+.+..++|.+. .+|..+..+..|+.|.|++|++-..+..+..++.+..+++..||.+.
T Consensus       314 KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  314 KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence            6666666666666666 66666666666666666666666555555556666666666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=2.2e-30  Score=248.86  Aligned_cols=288  Identities=25%  Similarity=0.403  Sum_probs=180.7

Q ss_pred             CCCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCC
Q 046036            1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP   80 (614)
Q Consensus         1 g~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p   80 (614)
                      |+||++++.+.+|..|+|.+|+|. .+| .|.+++.|++|+++.|.|. .+|...  +++++ +|.+|||.+|+++ +.|
T Consensus       196 ~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~--~~~L~-~l~vLDLRdNklk-e~P  268 (565)
T KOG0472|consen  196 ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEH--LKHLN-SLLVLDLRDNKLK-EVP  268 (565)
T ss_pred             hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHH--hcccc-cceeeeccccccc-cCc
Confidence            579999999999999999999999 788 8999999999999999998 778774  56888 9999999999998 899


Q ss_pred             CCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc-------------------------------------
Q 046036           81 AGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL-------------------------------------  123 (614)
Q Consensus        81 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~-------------------------------------  123 (614)
                      +.++.+.+|++||+|+|.|+ .+|.+++++ +|+.|-+..+.+                                     
T Consensus       269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence            99999999999999999998 788899999 888887611111                                     


Q ss_pred             ----------------ccceEecCCCccccccchhhhccCC---CCeeecccccCCCCCCCCCCCCCCCCE-EEcCCCCC
Q 046036          124 ----------------YSFQLNLAENNLTGNIPESLENLTS---LQILNLSCNHLGGSIPKPSGLFSTLSS-IDFAHNNF  183 (614)
Q Consensus       124 ----------------~l~~L~L~~N~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l  183 (614)
                                      +.+.|+++.-+++ .+|+....-..   ....+++.|++. .+|..+..+..+.+ +.+++|.+
T Consensus       347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI  424 (565)
T ss_pred             cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence                            2334555555555 33333222222   445555555555 44444443333322 23333333


Q ss_pred             ccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCccc
Q 046036          184 NGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKEL  263 (614)
Q Consensus       184 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  263 (614)
                      + .+|..++.+++|..|+|++|.+. .+|..++.+..|+.|++++|++. .+|..+..+..++.+-.++|++....|+.+
T Consensus       425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l  501 (565)
T KOG0472|consen  425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL  501 (565)
T ss_pred             c-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence            2 44444555555555555555443 33444444444555555555554 444444444444444444455544434444


Q ss_pred             CCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          264 ETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       264 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      ..+.+|..||+.+|.+...+|..+.+.++..+.+.|||.
T Consensus       502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            455555555555555554444445555555555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=4.1e-30  Score=259.02  Aligned_cols=277  Identities=26%  Similarity=0.362  Sum_probs=163.6

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcc-cCCcChhhhccccccccEEEccCCcccccCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHG-IIPPSLDSFTNLSTKLRILDAGGNQFAGDIP   80 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p   80 (614)
                      .+|++++.+.+|++|.+++|++. .+...++.++.|+.+++.+|++.. -+|..   +-.+. .|..||||+|+++ ..|
T Consensus        46 ~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d---iF~l~-dLt~lDLShNqL~-EvP  119 (1255)
T KOG0444|consen   46 QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTD---IFRLK-DLTILDLSHNQLR-EVP  119 (1255)
T ss_pred             hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCch---hcccc-cceeeecchhhhh-hcc
Confidence            35666666666666666666666 444556666666666666666642 24444   33444 5666666666665 566


Q ss_pred             CCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCC
Q 046036           81 AGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG  160 (614)
Q Consensus        81 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (614)
                      ..+...+++-.|+||+|+|..+.-..|.+|+.|-.||            ||+|++. .+|+.+..|..|+.|+|++|.+.
T Consensus       120 ~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD------------LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  120 TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD------------LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc------------cccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence            6666666666666666666633223445555555555            8888877 56667777777888888877765


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCc-cCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccc
Q 046036          161 GSIPKPSGLFSTLSSIDFAHNNFN-GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF  239 (614)
Q Consensus       161 ~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  239 (614)
                      ..--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|||.|++. ..|..+-++.+|+.|+||+|.|+ .+.-..
T Consensus       187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~  264 (1255)
T KOG0444|consen  187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTE  264 (1255)
T ss_pred             HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccH
Confidence            222222333444455555544322 245555666666666666666665 45666666666666666666665 344444


Q ss_pred             cCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCc--ccCCCccccCCCceEEEecC
Q 046036          240 GSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE--GQLPSMSVFTNTSVISIVGN  300 (614)
Q Consensus       240 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~--~~~p~~~~~~~l~~~~~~~N  300 (614)
                      +...+|++|+||+|+++ .+|+.+..+++|+.|++.+|+++  |.+..++.+.+++++....|
T Consensus       265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN  326 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN  326 (1255)
T ss_pred             HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence            45556666666666666 55666666666666666666554  33334455555555544444

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.94  E-value=5.8e-27  Score=236.71  Aligned_cols=178  Identities=27%  Similarity=0.428  Sum_probs=134.5

Q ss_pred             CCCCCC-ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCC-Ceee
Q 046036          389 DSGGND-FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDM-TAYV  447 (614)
Q Consensus       389 ~~~~~~-~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~-~~kl  447 (614)
                      .|.+.. ..++|||||++|+|.++|+.. ....++|..++++|.||                   |+|||++.++ .+||
T Consensus       107 ~~~~~~~~~~iVtEy~~~GsL~~~l~~~-~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI  185 (362)
T KOG0192|consen  107 ACTSPPGSLCIVTEYMPGGSLSVLLHKK-RKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKI  185 (362)
T ss_pred             EEcCCCCceEEEEEeCCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEE
Confidence            344444 689999999999999999974 35579999999999988                   7999999998 9999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc-c---CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V---ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~---~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      +|||+++......       ...+...||+.||| |. .   ..+++|+||||||||+|||+||+.||.....       
T Consensus       186 ~DFGlsr~~~~~~-------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~-------  251 (362)
T KOG0192|consen  186 ADFGLSREKVISK-------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP-------  251 (362)
T ss_pred             CCCccceeecccc-------ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH-------
Confidence            9999999876532       12344789999988 87 3   3699999999999999999999999986432       


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcc
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGV  600 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~  600 (614)
                                .+++.........+.      ..   .++...+..++.+||+.+|++||++.|++..|+.+.......
T Consensus       252 ----------~~~~~~v~~~~~Rp~------~p---~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~~~  310 (362)
T KOG0192|consen  252 ----------VQVASAVVVGGLRPP------IP---KECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHISSA  310 (362)
T ss_pred             ----------HHHHHHHHhcCCCCC------CC---ccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhccc
Confidence                      111122221211111      11   113344455666799999999999999999999998766543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=2.3e-29  Score=241.83  Aligned_cols=269  Identities=25%  Similarity=0.398  Sum_probs=241.1

Q ss_pred             ccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCC
Q 046036            7 IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY   86 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l   86 (614)
                      ++.-..|+.|++++|.+. .+-+.+.++..|+.|++++|+++ ..|+++   +.+. .++.|+.++|+++ .+|..++.+
T Consensus        41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai---g~l~-~l~~l~vs~n~ls-~lp~~i~s~  113 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAI---GELE-ALKSLNVSHNKLS-ELPEQIGSL  113 (565)
T ss_pred             hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHH---HHHH-HHHHhhcccchHh-hccHHHhhh
Confidence            444556899999999999 45557899999999999999999 778884   4554 7788999999998 899999999


Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCC
Q 046036           87 FNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP  166 (614)
Q Consensus        87 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~  166 (614)
                      .+|.+|++++|.+. .+|++++.+..|..|+            ..+|+++ ..|+.+..+.+|..|++.+|++....|..
T Consensus       114 ~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~------------~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~  179 (565)
T KOG0472|consen  114 ISLVKLDCSSNELK-ELPDSIGRLLDLEDLD------------ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENH  179 (565)
T ss_pred             hhhhhhhcccccee-ecCchHHHHhhhhhhh------------ccccccc-cCchHHHHHHHHHHhhccccchhhCCHHH
Confidence            99999999999998 8888999999999988            9999999 78889999999999999999999555554


Q ss_pred             CCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCcccc-CCCcc
Q 046036          167 SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG-SFKGT  245 (614)
Q Consensus       167 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L  245 (614)
                      + .++.|++||..+|.++ .+|.+++.+.+|..|+|.+|++. ..| .|.++..|++|+++.|.|. .+|.... +++++
T Consensus       180 i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l  254 (565)
T KOG0472|consen  180 I-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSL  254 (565)
T ss_pred             H-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccc
Confidence            4 4999999999999998 89999999999999999999998 456 8999999999999999998 6776655 89999


Q ss_pred             ceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCc
Q 046036          246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKL  303 (614)
Q Consensus       246 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~  303 (614)
                      ..|||.+|+++ ..|+.+.-+.+|.+||+|+|.+++.+++.+.+ .+..+.+.|||..
T Consensus       255 ~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  255 LVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             eeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            99999999999 78999999999999999999999999999888 8889999999953

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.93  E-value=4.4e-26  Score=229.40  Aligned_cols=173  Identities=23%  Similarity=0.337  Sum_probs=127.4

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      |..++..+||||||++|+|.++|... .+..+.-.+-+.+|.||                  +.|||++++..+||+|||
T Consensus       270 ~~~~~piyIVtE~m~~GsLl~yLr~~-~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFG  348 (468)
T KOG0197|consen  270 CTKQEPIYIVTEYMPKGSLLDYLRTR-EGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFG  348 (468)
T ss_pred             EecCCceEEEEEecccCcHHHHhhhc-CCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccc
Confidence            44556789999999999999999873 35568888888888888                  899999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccccc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNMEW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aE~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +||...++...     .+.....--.+|+||.  ..+++.|||||||||+||||+| |+.||..+..             
T Consensus       349 LAr~~~d~~Y~-----~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn-------------  410 (468)
T KOG0197|consen  349 LARLIGDDEYT-----ASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSN-------------  410 (468)
T ss_pred             cccccCCCcee-----ecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCH-------------
Confidence            99965554331     1111112223457787  7899999999999999999999 8999876432             


Q ss_pred             CCChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                          .+++. .+.++.. +.|          ..|...+-+|+..||+.+|++|||++.....++.+...
T Consensus       411 ----~ev~~-~le~GyRlp~P----------~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  411 ----EEVLE-LLERGYRLPRP----------EGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             ----HHHHH-HHhccCcCCCC----------CCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence                22222 2222221 122          13445566788899999999999999888888877653

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=206.96  Aligned_cols=161  Identities=24%  Similarity=0.324  Sum_probs=119.9

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||.+|||++.+...   .+++....-+||.++                   |+|||++..+++||||||.++.
T Consensus       152 ~isI~mEYMDgGSLd~~~k~~---g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~  228 (364)
T KOG0581|consen  152 EISICMEYMDGGSLDDILKRV---GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGI  228 (364)
T ss_pred             eEEeehhhcCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHH
Confidence            689999999999999999753   357777666676666                   9999999999999999999998


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      +....         ..+.+||..||+ |-  +..|+.++||||||++++|+.+|+-|+......            +...
T Consensus       229 lvnS~---------a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~------------~~~~  287 (364)
T KOG0581|consen  229 LVNSI---------ANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPP------------YLDI  287 (364)
T ss_pred             hhhhh---------cccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCC------------CCCH
Confidence            76542         345899999988 76  779999999999999999999999999753110            1123


Q ss_pred             HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          533 MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       533 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .+.++..+.+....-|..  .++.++.       ...-.|++++|.+||++.|++.
T Consensus       288 ~~Ll~~Iv~~ppP~lP~~--~fS~ef~-------~FV~~CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  288 FELLCAIVDEPPPRLPEG--EFSPEFR-------SFVSCCLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             HHHHHHHhcCCCCCCCcc--cCCHHHH-------HHHHHHhcCCcccCCCHHHHhc
Confidence            344444443322211111  2333333       3445899999999999999985

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3e-24  Score=226.80  Aligned_cols=177  Identities=20%  Similarity=0.308  Sum_probs=135.7

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCC-------C----CcccCHHHHHHHHhhC------------------CCceee
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNE-------A----TRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~-------~----~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      -|..++..++|+|||..|||.++|....       +    ..+|+-.+.+.||.||                  ..|+|+
T Consensus       557 VC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLV  636 (774)
T KOG1026|consen  557 VCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLV  636 (774)
T ss_pred             EEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhcee
Confidence            4677889999999999999999996432       1    2238889999999998                  799999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      .+++.+||+|||++|-....+.+.     ......-...||| |-  .+++|++||||||||||||++| |+.||.+...
T Consensus       637 ge~l~VKIsDfGLsRdiYssDYYk-----~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn  711 (774)
T KOG1026|consen  637 GENLVVKISDFGLSRDIYSSDYYK-----VRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSN  711 (774)
T ss_pred             ccceEEEecccccchhhhhhhhhc-----ccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccch
Confidence            999999999999999877766542     1212333467888 75  8999999999999999999999 9999987543


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      +                 |+++..-.+..=+.|          +.|..++-.++..||+..|++||+++||-..|+...+
T Consensus       712 ~-----------------EVIe~i~~g~lL~~P----------e~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~  764 (774)
T KOG1026|consen  712 Q-----------------EVIECIRAGQLLSCP----------ENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQ  764 (774)
T ss_pred             H-----------------HHHHHHHcCCcccCC----------CCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHh
Confidence            2                 122111111111111          3566677889999999999999999999999987765


Q ss_pred             Hh
Q 046036          596 VL  597 (614)
Q Consensus       596 ~~  597 (614)
                      ..
T Consensus       765 ~s  766 (774)
T KOG1026|consen  765 AS  766 (774)
T ss_pred             cC
Confidence            43

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-25  Score=237.47  Aligned_cols=291  Identities=31%  Similarity=0.393  Sum_probs=210.9

Q ss_pred             CCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhc-----------------------
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFT-----------------------   59 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-----------------------   59 (614)
                      +|.+.+++.+|++|.|.+|.+. ..|..+..+++|++|+++.|++. .+|..+..+.                       
T Consensus        83 vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~  160 (1081)
T KOG0618|consen   83 VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKK  160 (1081)
T ss_pred             Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchh
Confidence            5677777888888888888777 77888888888888888888876 5555443200                       


Q ss_pred             ------------------------------------ccc-------------------ccccEEEccCCcccccCCCCCc
Q 046036           60 ------------------------------------NLS-------------------TKLRILDAGGNQFAGDIPAGIP   84 (614)
Q Consensus        60 ------------------------------------~l~-------------------~~L~~L~L~~N~l~~~~p~~~~   84 (614)
                                                          ++.                   ++|+.|+.++|.++...+.  .
T Consensus       161 ~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p  238 (1081)
T KOG0618|consen  161 LDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--P  238 (1081)
T ss_pred             hhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--c
Confidence                                                000                   1233333333333311111  1


Q ss_pred             CCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc-----------ccceEecCCCccccccchhhhccCCCCeee
Q 046036           85 KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL-----------YSFQLNLAENNLTGNIPESLENLTSLQILN  153 (614)
Q Consensus        85 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~-----------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~  153 (614)
                      .-.+|++++++.|+++ .+|++++.+.+|+.|+...+.+           +++.|.+.+|.+. .+|+....+++|+.|+
T Consensus       239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             ccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            1236788888888887 5668888888888877633322           5566667777777 5566666777777777


Q ss_pred             cccccCCCCCCCCC--------------------------CCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccC
Q 046036          154 LSCNHLGGSIPKPS--------------------------GLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHML  207 (614)
Q Consensus       154 L~~N~l~~~~p~~~--------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l  207 (614)
                      |..|+|. .+|+.+                          ..++.|+.|++.+|.++...-..+-+..+|+.|+|++|.+
T Consensus       317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            7777776 333321                          1234577888999999887777888899999999999999


Q ss_pred             CCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCccc-CCCc
Q 046036          208 SDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQ-LPSM  286 (614)
Q Consensus       208 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~  286 (614)
                      .......+.++..|++|+||+|+++ .+|+.+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|..
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence            8776677889999999999999998 78899999999999999999998 677 788999999999999999854 4444


Q ss_pred             cccCCCceEEEecCCCc
Q 046036          287 SVFTNTSVISIVGNGKL  303 (614)
Q Consensus       287 ~~~~~l~~~~~~~N~~~  303 (614)
                      ...+++++++++||.++
T Consensus       473 ~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             CCCcccceeeccCCccc
Confidence            34488999999999864

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-23  Score=208.83  Aligned_cols=175  Identities=20%  Similarity=0.338  Sum_probs=127.3

Q ss_pred             CCCCCCCCCceeEEecccCCCchhhhccCCCC---CcccCHHHHHHHHhhC--------------CCceeeCCCCCeeec
Q 046036          386 SSMDSGGNDFKALAFEFMPNGSLESWLHPNEA---TRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       386 ~~~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~---~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~  448 (614)
                      |.+.|.....+|+|||||+.|-|+.+|+....   ....+|..  .||.|.              +-|||+..+..+||+
T Consensus       177 FkGVCtqsPcyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk--~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIs  254 (904)
T KOG4721|consen  177 FKGVCTQSPCYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSK--GIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKIS  254 (904)
T ss_pred             EeeeecCCceeEEeeeccccccHHHHHhccCccCHHHHHHHHH--HhhhhhHHHHHhhHhhhccCCCceEeeccceEEec
Confidence            55667778889999999999999999986541   11234443  334443              899999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchH-H--H
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL-H--N  522 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l-~--~  522 (614)
                      |||.++.+.+.        +..+.++||..||| |+  ...+++|+||||||||||||+||..||.+........ +  .
T Consensus       255 DFGTS~e~~~~--------STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsN  326 (904)
T KOG4721|consen  255 DFGTSKELSDK--------STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSN  326 (904)
T ss_pred             cccchHhhhhh--------hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCC
Confidence            99999987654        23567999999988 88  7789999999999999999999999998643221100 0  0


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                      .....+|.                             .|...+.-+...||+..|..||++++++..|+-....++.
T Consensus       327 sL~LpvPs-----------------------------tcP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa~pell~  374 (904)
T KOG4721|consen  327 SLHLPVPS-----------------------------TCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIASPELLS  374 (904)
T ss_pred             cccccCcc-----------------------------cCchHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCHHHhc
Confidence            00111111                             2222333355689999999999999999998866555443

>PHA02988 hypothetical protein; Provisional

Probab=99.88  E-value=1.1e-22  Score=203.42  Aligned_cols=164  Identities=20%  Similarity=0.259  Sum_probs=121.2

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ....++||||+++|+|.++++..   ..++|..+.+++.++                   |+||++++++.+|++|||++
T Consensus        94 ~~~~~lv~Ey~~~g~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~  170 (283)
T PHA02988         94 LPRLSLILEYCTRGYLREVLDKE---KDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLE  170 (283)
T ss_pred             CCceEEEEEeCCCCcHHHHHhhC---CCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchH
Confidence            34678999999999999999854   358888888777665                   89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--c--CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +.+....          ....|++.|+| |+  .  ..++.++|||||||++|||+||+.||.....             
T Consensus       171 ~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~-------------  227 (283)
T PHA02988        171 KILSSPP----------FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT-------------  227 (283)
T ss_pred             hhhcccc----------ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH-------------
Confidence            8764321          23468889977 87  2  5789999999999999999999999975321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                          .+..+..+.........  .       .+...+.+++..||+.+|++||||.|++..|++.+.
T Consensus       228 ----~~~~~~i~~~~~~~~~~--~-------~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~  281 (283)
T PHA02988        228 ----KEIYDLIINKNNSLKLP--L-------DCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYKF  281 (283)
T ss_pred             ----HHHHHHHHhcCCCCCCC--C-------cCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHh
Confidence                11111222111111000  0       112234567779999999999999999999998764

>PLN03210 Resistant to P

Probab=99.88  E-value=1e-21  Score=230.31  Aligned_cols=280  Identities=21%  Similarity=0.238  Sum_probs=151.3

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      ..+|+.|+|.+|++. .++..+..+++|++|+|++|...+.+|.    +..++ +|+.|+|++|.....+|..+.++++|
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD----LSMAT-NLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc----cccCC-cccEEEecCCCCccccchhhhccCCC
Confidence            344555555555544 3444444555555555554433223332    33343 55555555544333455555555555


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCcccccccc---------cccceEecCCCccccccchhhhccCCCCeeecccccCC
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS---------LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG  160 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~---------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (614)
                      +.|++++|...+.+|..+ ++++|+.|++....         .+++.|+|++|.+. .+|..+ .+++|++|++.++...
T Consensus       684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE  760 (1153)
T ss_pred             CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence            555555543333444333 34444444431110         03344444444443 233222 3444444444432211


Q ss_pred             -------CCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccc
Q 046036          161 -------GSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG  233 (614)
Q Consensus       161 -------~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  233 (614)
                             ...+......++|+.|+|++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|+|++|....
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence                   0011111223567777777777666777777778888888887765444556554 57777777887765444


Q ss_pred             cCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcC-CcCcccCCCccccCCCceEEEecCCCc
Q 046036          234 RIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSF-NNFEGQLPSMSVFTNTSVISIVGNGKL  303 (614)
Q Consensus       234 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~~~l~~~~~~~N~~~  303 (614)
                      .+|..   ..+|+.|+|++|.++ .+|..+..+++|+.|++++ |+++...+....++.+..+++.+++.+
T Consensus       840 ~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        840 TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            45542   356777888888877 5677777788888888876 556655555566677777777665433

syringae 6; Provisional

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.87  E-value=2.1e-22  Score=220.67  Aligned_cols=180  Identities=24%  Similarity=0.340  Sum_probs=135.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC----CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeec
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE----ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~----~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~  448 (614)
                      -..+..++++|||++|||..+|+..+    ....+.-..-+.+|+||                  ++|+||++...+||+
T Consensus       765 l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIa  844 (1025)
T KOG1095|consen  765 LDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIA  844 (1025)
T ss_pred             cCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEc
Confidence            34677899999999999999998753    24467888888888888                  799999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~  524 (614)
                      |||+||-+...+.+...+.     ..-...||| |.  .+.++.|+|||||||++||++| |..||.....         
T Consensus       845 DFGlArDiy~~~yyr~~~~-----a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n---------  910 (1025)
T KOG1095|consen  845 DFGLARDIYDKDYYRKHGE-----AMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSN---------  910 (1025)
T ss_pred             ccchhHhhhhchheeccCc-----cccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcch---------
Confidence            9999996555544311111     111246888 87  6899999999999999999999 8999875322         


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcccc
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVRI  602 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~~~  602 (614)
                              .+++...+.+. .-+++         ..|...+.+|+..||+.+|++||+++.+++.+..+.....+.-+
T Consensus       911 --------~~v~~~~~~gg-RL~~P---------~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~~~~~~  970 (1025)
T KOG1095|consen  911 --------FEVLLDVLEGG-RLDPP---------SYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAALGTIY  970 (1025)
T ss_pred             --------HHHHHHHHhCC-ccCCC---------CCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhhhccCcc
Confidence                    23333333333 11111         25666777899999999999999999999999999887766544

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=8e-23  Score=198.14  Aligned_cols=165  Identities=22%  Similarity=0.210  Sum_probs=115.1

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC---CCeeec
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD---MTAYVG  448 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~---~~~kl~  448 (614)
                      +...+..|+|||||++|+|.+.+-..+   .+......-++.|+                  |.|||+..+   ..+||+
T Consensus       245 f~~~ds~YmVlE~v~GGeLfd~vv~nk---~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKIt  321 (475)
T KOG0615|consen  245 FEVPDSSYMVLEYVEGGELFDKVVANK---YLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKIT  321 (475)
T ss_pred             eecCCceEEEEEEecCccHHHHHHhcc---ccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEec
Confidence            455778899999999999999987543   23333323333332                  999999766   789999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      |||+||+....        +-+.+.||||.|.| |+     ...+..|+|+||+|||||-++||..||.+......    
T Consensus       322 DFGlAK~~g~~--------sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~s----  389 (475)
T KOG0615|consen  322 DFGLAKVSGEG--------SFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPS----  389 (475)
T ss_pred             ccchhhccccc--------eehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCcc----
Confidence            99999998743        34667999999955 87     22344588999999999999999999987543321    


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                  ..+....+.+...|......+       ++..++.-+.+.-||++|||+.|++.
T Consensus       390 ------------l~eQI~~G~y~f~p~~w~~Is-------eea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  390 ------------LKEQILKGRYAFGPLQWDRIS-------EEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             ------------HHHHHhcCcccccChhhhhhh-------HHHHHHHHHhhEeCcccCcCHHHHhc
Confidence                        122233334444433322222       23334555678889999999999985

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-24  Score=209.51  Aligned_cols=254  Identities=20%  Similarity=0.239  Sum_probs=153.6

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccE-EEccCCcccccCCCCCcCCCCCC
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI-LDAGGNQFAGDIPAGIPKYFNLI   90 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~-L~L~~N~l~~~~p~~~~~l~~L~   90 (614)
                      .-..++|..|+|+.+.|.+|+.+++|+.||||+|+|+.+-|+.   |.++. +|.. +++++|+|+...-+.|.++..|+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A---F~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA---FKGLA-SLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh---hhhhH-hhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            4567788888888777788888888888888888888777877   44444 3333 34444778754445677888888


Q ss_pred             EEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCC----------
Q 046036           91 QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG----------  160 (614)
Q Consensus        91 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----------  160 (614)
                      .|.+.-|++..+..+.|..+++|..|.            |..|.+..+--..|..+.+++.+.+..|.+.          
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLs------------lyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLS------------LYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhc------------ccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence            888888888777777777777777776            7777777443346777777777777777632          


Q ss_pred             --CCCCCCCCCCCCCCEEEcCCCCCcc-------------------------CCc-ccccCCCCCceeccCCccCCCCcc
Q 046036          161 --GSIPKPSGLFSTLSSIDFAHNNFNG-------------------------SLP-LEVGSLSNTQELDFSEHMLSDEIP  212 (614)
Q Consensus       161 --~~~p~~~~~l~~L~~L~Ls~N~l~~-------------------------~~~-~~~~~l~~L~~L~ls~N~l~~~~~  212 (614)
                        ...|..++.+.-.....+.++++..                         ..| ..|..+++|+.|+|++|+++.+-+
T Consensus       212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence              1112222222222222222222211                         111 234555555555555555555555


Q ss_pred             ccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcc
Q 046036          213 ITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       213 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  281 (614)
                      .+|.++..+++|+|..|+|..+-...|.++..|+.|+|.+|+|+...|.+|..+.+|..|++-.|++.+
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence            555555555555555555554444555555555555555555555555555555555555555555543

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.4e-22  Score=186.92  Aligned_cols=165  Identities=22%  Similarity=0.306  Sum_probs=120.7

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC----------------------CCceeeCCCCCeeecc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI----------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i----------------------~~NILld~~~~~kl~D  449 (614)
                      .+..++|||||..|||...+..-+ ..+.++..+..++..++                      |.||+||+++.+|++|
T Consensus        92 ~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGD  171 (375)
T KOG0591|consen   92 NEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGD  171 (375)
T ss_pred             chhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeecc
Confidence            344789999999999999997532 44566766666665554                      9999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||++|++....       +.....+|||.||. |.  ...|+.|+||||.||+++||..-++||.+.             
T Consensus       172 fGL~r~l~s~~-------tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~-------------  231 (375)
T KOG0591|consen  172 FGLGRFLSSKT-------TFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD-------------  231 (375)
T ss_pred             chhHhHhcchh-------HHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc-------------
Confidence            99999987653       33556899999977 77  778999999999999999999999999853             


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                           -...+...+.++.-+     |...+...+   .+-.++-.|+..||+.||+.-..+..+
T Consensus       232 -----n~~~L~~KI~qgd~~-----~~p~~~YS~---~l~~li~~ci~vd~~~RP~t~~~v~di  282 (375)
T KOG0591|consen  232 -----NLLSLCKKIEQGDYP-----PLPDEHYST---DLRELINMCIAVDPEQRPDTVPYVQDI  282 (375)
T ss_pred             -----cHHHHHHHHHcCCCC-----CCcHHHhhh---HHHHHHHHHccCCcccCCCcchHHHHH
Confidence                 122333444444211     111122223   334566789999999999964444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.2e-21  Score=213.55  Aligned_cols=235  Identities=24%  Similarity=0.292  Sum_probs=127.1

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCE
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ   91 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~   91 (614)
                      +|+.|++++|+|+ .+|..   .++|++|+|++|+|+ .+|..   .    .+|+.|+|++|.|+ .+|..   ..+|+.
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p----~sL~~L~Ls~N~L~-~Lp~l---p~~L~~  286 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---P----PGLLELSIFSNPLT-HLPAL---PSGLCK  286 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---c----cccceeeccCCchh-hhhhc---hhhcCE
Confidence            4555555555555 23321   345555555555555 23321   1    14445555555554 23321   134455


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCC
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS  171 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  171 (614)
                      |+|++|+++ .+|..   +++|+.            |+|++|+|++ +|..   ..+|+.|++++|+|+ .+|..   ..
T Consensus       287 L~Ls~N~Lt-~LP~~---p~~L~~------------LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~  342 (788)
T PRK15387        287 LWIFGNQLT-SLPVL---PPGLQE------------LSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PS  342 (788)
T ss_pred             EECcCCccc-ccccc---ccccce------------eECCCCcccc-CCCC---cccccccccccCccc-ccccc---cc
Confidence            555555554 23321   233444            4477777764 3332   234666677777766 34431   24


Q ss_pred             CCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEcc
Q 046036          172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLS  251 (614)
Q Consensus       172 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  251 (614)
                      +|+.|+|++|+|+ .+|..   ..+|+.|++++|.|+. +|..   ..+|+.|+|++|.|++ +|..   .++|+.|+++
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS  410 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVS  410 (788)
T ss_pred             ccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEcc
Confidence            6777777777776 34432   2456666777777764 3432   2456677777777763 4432   2456777777


Q ss_pred             CCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          252 HNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       252 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      +|+|++ +|..+   .+|+.|++++|+|+..+..+..+.++..+++.+|+.
T Consensus       411 ~N~Lss-IP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        411 GNRLTS-LPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             CCcCCC-CCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence            777763 45432   356667777777765444455566777777777764

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.86  E-value=8.2e-23  Score=211.89  Aligned_cols=166  Identities=23%  Similarity=0.408  Sum_probs=127.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++|.|||+||+|+.+|+.+.  ..+.|.+.+.+..||                  +.|||++.+..+||+|||++|+
T Consensus       703 ~PvMIiTEyMENGsLDsFLR~~D--GqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRv  780 (996)
T KOG0196|consen  703 KPVMIITEYMENGSLDSFLRQND--GQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  780 (996)
T ss_pred             ceeEEEhhhhhCCcHHHHHhhcC--CceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceee
Confidence            34689999999999999998764  348998888888888                  7999999999999999999999


Q ss_pred             cCCCCCCCCCCCcCcccccc--cccc-cccc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWG--SIGY-NMEW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~g--t~~y-~aE~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.++..      ..++..-|  ...| +||-  .+++|..+|||||||||||.++ |.+||-++...             
T Consensus       781 ledd~~------~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQ-------------  841 (996)
T KOG0196|consen  781 LEDDPE------AAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ-------------  841 (996)
T ss_pred             cccCCC------ccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchH-------------
Confidence            876542      22333333  2456 4476  7899999999999999999988 99999876432             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                          +++. .+.+++.-.|+         .+|...+-++++.||++|..+||.+.|++..|.++-
T Consensus       842 ----dVIk-aIe~gyRLPpP---------mDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklI  892 (996)
T KOG0196|consen  842 ----DVIK-AIEQGYRLPPP---------MDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLI  892 (996)
T ss_pred             ----HHHH-HHHhccCCCCC---------CCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence                2222 22222221111         366777889999999999999999999999998764

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.86  E-value=1.2e-21  Score=201.57  Aligned_cols=172  Identities=22%  Similarity=0.310  Sum_probs=121.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCC-------------------------------------------------------
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEA-------------------------------------------------------  417 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~-------------------------------------------------------  417 (614)
                      ++..++||||+++|+|.+++.....                                                       
T Consensus        84 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (338)
T cd05102          84 NGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQET  163 (338)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhc
Confidence            3457899999999999999864311                                                       


Q ss_pred             ----CcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccc
Q 046036          418 ----TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG  475 (614)
Q Consensus       418 ----~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~g  475 (614)
                          ...++|....+++.++                  |+|||+++++.+||+|||+++........     .......+
T Consensus       164 ~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~-----~~~~~~~~  238 (338)
T cd05102         164 DDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY-----VRKGSARL  238 (338)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcch-----hcccCCCC
Confidence                1247787777777776                  99999999999999999999876433221     11223456


Q ss_pred             cccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCc
Q 046036          476 SIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDE  551 (614)
Q Consensus       476 t~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  551 (614)
                      ++.|+| |+  ...++.++|||||||++|||+| |+.||......                 +.+...+.......... 
T Consensus       239 ~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~-----------------~~~~~~~~~~~~~~~~~-  300 (338)
T cd05102         239 PLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIN-----------------EEFCQRLKDGTRMRAPE-  300 (338)
T ss_pred             CccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCcc-----------------HHHHHHHhcCCCCCCCC-
Confidence            788976 86  6678999999999999999997 99998753211                 01111111111100000 


Q ss_pred             hhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          552 PCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       552 ~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                              .....+.+++..|++.+|++||||.|+++.|+.+.+
T Consensus       301 --------~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         301 --------NATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             --------CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                    112235578889999999999999999999997754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.86  E-value=3.1e-24  Score=226.68  Aligned_cols=293  Identities=29%  Similarity=0.376  Sum_probs=189.7

Q ss_pred             CCCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCC
Q 046036            1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP   80 (614)
Q Consensus         1 g~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p   80 (614)
                      |..|..+..+.+|+.|+++.|.|. .+|.+.+++.+|++|+|.+|.+. ..|.+   +..+. +|+.|+++.|++. .+|
T Consensus        58 ~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~---~~~lk-nl~~LdlS~N~f~-~~P  130 (1081)
T KOG0618|consen   58 SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPAS---ISELK-NLQYLDLSFNHFG-PIP  130 (1081)
T ss_pred             ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchh---HHhhh-cccccccchhccC-CCc
Confidence            355666777777777777777777 66677777777777777777776 67777   55565 7777777777775 455


Q ss_pred             CCCcCCCCCCE-------------------EeccCCcCcccCCccccCCC-------------------CCCcccc----
Q 046036           81 AGIPKYFNLIQ-------------------LGLDRNCLAGSIPFSIGKLQ-------------------NLQKLNP----  118 (614)
Q Consensus        81 ~~~~~l~~L~~-------------------L~L~~N~l~~~~p~~~~~l~-------------------~L~~L~l----  118 (614)
                      ..+..++.++.                   ++|..|.+.+.++..+..++                   +|+.|..    
T Consensus       131 l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~  210 (1081)
T KOG0618|consen  131 LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQ  210 (1081)
T ss_pred             hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcc
Confidence            43333322222                   22222222223332222222                   2222221    


Q ss_pred             --------------------------cccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036          119 --------------------------LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus       119 --------------------------~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                                                -|...+++++++++|+++ .+|++++.+.+|+.|+..+|+|+ .+|..+....+
T Consensus       211 ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~  288 (1081)
T KOG0618|consen  211 LSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITS  288 (1081)
T ss_pred             cceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhh
Confidence                                      011116678889999988 45688899999999999998886 66766666667


Q ss_pred             CCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccc-------------------------cCcccchHHhcc
Q 046036          173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITL-------------------------GNRSKFEHLLLG  227 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~-------------------------~~l~~L~~L~L~  227 (614)
                      |+.|.+.+|.+. -+|....+++.|++|+|..|+|....+..|                         ..++.|+.|++.
T Consensus       289 L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  289 LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             HHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            777777777776 556666667777777777777754322111                         113457777888


Q ss_pred             CccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCccc----------------------CCC
Q 046036          228 GNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQ----------------------LPS  285 (614)
Q Consensus       228 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~----------------------~p~  285 (614)
                      +|.++...-+.+.++++|+.|+|++|+|.......+.+++.|+.|+||+|+++..                      .|.
T Consensus       368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe  447 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE  447 (1081)
T ss_pred             cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh
Confidence            8887766666677778888888888888755556677777888888888877643                      345


Q ss_pred             ccccCCCceEEEecCCCc
Q 046036          286 MSVFTNTSVISIVGNGKL  303 (614)
Q Consensus       286 ~~~~~~l~~~~~~~N~~~  303 (614)
                      ...++.++.+|++-|..-
T Consensus       448 ~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hhhcCcceEEecccchhh
Confidence            566677778888777543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=8.8e-22  Score=216.16  Aligned_cols=249  Identities=23%  Similarity=0.347  Sum_probs=173.8

Q ss_pred             CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCC
Q 046036           11 FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLI   90 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~   90 (614)
                      .+.+.|++++++++ .+|..+.  ++|+.|+|++|+|+ .+|..+   .  . +|++|+|++|+|+ .+|..+.  .+|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l---~--~-nL~~L~Ls~N~Lt-sLP~~l~--~~L~  244 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENL---Q--G-NIKTLYANSNQLT-SIPATLP--DTIQ  244 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhh---c--c-CCCEEECCCCccc-cCChhhh--cccc
Confidence            45678888888888 5676553  47888888888888 566552   1  2 7888888888887 5676554  3788


Q ss_pred             EEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCC
Q 046036           91 QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLF  170 (614)
Q Consensus        91 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  170 (614)
                      .|+|++|+++ .+|..+.  .+|+.|+            |++|+|+ .+|..+.  ++|+.|+|++|+|+ .+|..+.  
T Consensus       245 ~L~Ls~N~L~-~LP~~l~--s~L~~L~------------Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--  303 (754)
T PRK15370        245 EMELSINRIT-ELPERLP--SALQSLD------------LFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--  303 (754)
T ss_pred             EEECcCCccC-cCChhHh--CCCCEEE------------CcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--
Confidence            8888888887 5666553  3566555            8888887 4565553  57888888888887 4554432  


Q ss_pred             CCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEc
Q 046036          171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNL  250 (614)
Q Consensus       171 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  250 (614)
                      ++|+.|++++|.++ .+|..+  .++|+.|++++|.+++ +|..+.  ++|+.|+|++|+|+ .+|..+.  ++|+.|+|
T Consensus       304 ~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdL  374 (754)
T PRK15370        304 SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDV  374 (754)
T ss_pred             hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEEC
Confidence            46888888888887 355443  3578888888888875 455443  57888888888887 4665543  57888888


Q ss_pred             cCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCcc----ccCCCceEEEecCCCccc
Q 046036          251 SHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS----VFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       251 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~----~~~~l~~~~~~~N~~~c~  305 (614)
                      ++|+|+. +|..+.  ..|+.|++++|+++..+..+.    ..+++..+++.+||....
T Consensus       375 s~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~  430 (754)
T PRK15370        375 SRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSER  430 (754)
T ss_pred             CCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHH
Confidence            8888884 455443  367888888888875433222    235667788888876543

>PLN03210 Resistant to P

Probab=99.85  E-value=1e-20  Score=221.86  Aligned_cols=263  Identities=24%  Similarity=0.278  Sum_probs=131.1

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      |+.|++.++.++ .+|..| ...+|+.|++++|++. .+|..   +..++ +|+.|+|++|.....+|. +..+++|++|
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~---~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L  662 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG---VHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETL  662 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc---cccCC-CCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence            444444444443 333333 2344445555544444 23333   33343 445555544432223332 4444455555


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                      +|++|.....+|..++.+++|+.|+            +++|.....+|..+ ++++|+.|+|++|...+.+|..   ..+
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~------------L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~n  726 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLD------------MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STN  726 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEe------------CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCC
Confidence            5554443334444444444444444            55443333344333 4455555555554433333321   234


Q ss_pred             CCEEEcCCCCCccCCcccc------------------------------cCCCCCceeccCCccCCCCccccccCcccch
Q 046036          173 LSSIDFAHNNFNGSLPLEV------------------------------GSLSNTQELDFSEHMLSDEIPITLGNRSKFE  222 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~~~~------------------------------~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~  222 (614)
                      |++|++++|.+. .+|..+                              ...++|+.|+|++|...+.+|..++++++|+
T Consensus       727 L~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~  805 (1153)
T PLN03210        727 ISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE  805 (1153)
T ss_pred             cCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence            455555555544 233221                              1123555566666655555666666666666


Q ss_pred             HHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          223 HLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       223 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      .|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|+.|++++|.++..+..+..++++..+++.+++.
T Consensus       806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             EEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence            66666654333455444 4566666666665444344432   2567777777777776555566677888888887655


Q ss_pred             cc
Q 046036          303 LC  304 (614)
Q Consensus       303 ~c  304 (614)
                      +.
T Consensus       882 L~  883 (1153)
T PLN03210        882 LQ  883 (1153)
T ss_pred             cC
Confidence            44

syringae 6; Provisional

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.85  E-value=4.2e-22  Score=193.44  Aligned_cols=113  Identities=30%  Similarity=0.475  Sum_probs=95.4

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC------CCe
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD------MTA  445 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~------~~~  445 (614)
                      +..+++.+||||||.+|||.++|+.++   .++......++.|+                  |.||||+..      -..
T Consensus        78 ~~~~~~i~lVMEyC~gGDLs~yi~~~~---~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~L  154 (429)
T KOG0595|consen   78 IEDDDFIYLVMEYCNGGDLSDYIRRRG---RLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVL  154 (429)
T ss_pred             EecCCeEEEEEEeCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceE
Confidence            456788999999999999999999764   47776665555555                  999999875      457


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ||+|||+||.+....        .....||+|-||| |+  ..+|+.|+|.||.|+|+||+++|+.||+..
T Consensus       155 KIADFGfAR~L~~~~--------~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  155 KIADFGFARFLQPGS--------MAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             EecccchhhhCCchh--------HHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            999999999987542        3456999999988 87  789999999999999999999999999864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.85  E-value=2.3e-21  Score=212.90  Aligned_cols=233  Identities=23%  Similarity=0.391  Sum_probs=183.8

Q ss_pred             CCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCC
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      +|..+.  ++|+.|+|++|+|+ .+|..+.  ++|++|+|++|+|+ .+|..+   .   .+|+.|+|++|+++ .+|..
T Consensus       193 LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~---~~L~~L~Ls~N~L~-~LP~~  259 (754)
T PRK15370        193 IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---P---DTIQEMELSINRIT-ELPER  259 (754)
T ss_pred             CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---h---ccccEEECcCCccC-cCChh
Confidence            565553  57999999999999 5676554  58999999999999 567663   2   27999999999998 77877


Q ss_pred             CcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCC
Q 046036           83 IPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS  162 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  162 (614)
                      +.  .+|+.|+|++|+++ .+|..+.  .+|+.|+            |++|+|++ +|..+.  ++|+.|++++|+++ .
T Consensus       260 l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~------------Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~  318 (754)
T PRK15370        260 LP--SALQSLDLFHNKIS-CLPENLP--EELRYLS------------VYDNSIRT-LPAHLP--SGITHLNVQSNSLT-A  318 (754)
T ss_pred             Hh--CCCCEEECcCCccC-ccccccC--CCCcEEE------------CCCCcccc-Ccccch--hhHHHHHhcCCccc-c
Confidence            65  48999999999998 5776554  4677666            99999994 555443  57999999999998 4


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCC
Q 046036          163 IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSF  242 (614)
Q Consensus       163 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  242 (614)
                      +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++. +|..+  .++|+.|+|++|.|+ .+|..+.  
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--  387 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALT-NLPENLP--  387 (754)
T ss_pred             CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence            56544  3689999999999984 676653  789999999999984 56555  368999999999998 5666554  


Q ss_pred             CccceEEccCCcCcccCCcc----cCCCCCCCEEECcCCcCcc
Q 046036          243 KGTIDLNLSHNNLSGTIPKE----LETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       243 ~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~ls~N~l~~  281 (614)
                      ..|+.|++++|+|+ .+|..    +..++.+..|++.+|+++.
T Consensus       388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            47999999999998 45543    4456889999999999873

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=3e-21  Score=196.69  Aligned_cols=116  Identities=22%  Similarity=0.288  Sum_probs=99.6

Q ss_pred             CCCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeec
Q 046036          387 SMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       387 ~~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~  448 (614)
                      ..++.+.+..|+|.|+|++|+|.+++..+   ..++..+...+..||                  -.|++|++++++||+
T Consensus        84 ~~~FEDs~nVYivLELC~~~sL~el~Krr---k~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIg  160 (592)
T KOG0575|consen   84 YHFFEDSNNVYIVLELCHRGSLMELLKRR---KPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIG  160 (592)
T ss_pred             eeEeecCCceEEEEEecCCccHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEec
Confidence            34567788999999999999999999843   468888888888887                  699999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      |||+|..+..++.       ...+.||||.|+| |+  ....+..+||||.|||+|-|+.|++||+.
T Consensus       161 DFGLAt~le~~~E-------rk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFet  220 (592)
T KOG0575|consen  161 DFGLATQLEYDGE-------RKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFET  220 (592)
T ss_pred             ccceeeeecCccc-------ccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCccc
Confidence            9999998875532       2456899999966 88  66788999999999999999999999985

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=6.7e-21  Score=207.87  Aligned_cols=223  Identities=29%  Similarity=0.355  Sum_probs=176.8

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      .++|++|+|++|+|+ .+|..   .++|+.|+|++|.++ .+|..   +    .+|+.|+|++|+++ .+|..   +++|
T Consensus       241 p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p----~~L~~L~Ls~N~Lt-~LP~~---p~~L  304 (788)
T PRK15387        241 PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---P----SGLCKLWIFGNQLT-SLPVL---PPGL  304 (788)
T ss_pred             CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---h----hhcCEEECcCCccc-ccccc---cccc
Confidence            578999999999999 45643   468999999999998 45543   2    37889999999998 56653   4689


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCC
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL  169 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  169 (614)
                      +.|+|++|++++ +|...   .+|+.|+            +++|+|++ +|..   ..+|++|+|++|+|+ .+|..   
T Consensus       305 ~~LdLS~N~L~~-Lp~lp---~~L~~L~------------Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---  360 (788)
T PRK15387        305 QELSVSDNQLAS-LPALP---SELCKLW------------AYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---  360 (788)
T ss_pred             ceeECCCCcccc-CCCCc---ccccccc------------cccCcccc-cccc---ccccceEecCCCccC-CCCCC---
Confidence            999999999985 55433   3456666            99999984 5532   258999999999999 46653   


Q ss_pred             CCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEE
Q 046036          170 FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLN  249 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  249 (614)
                      .++|+.|++++|.|+ .+|..   ..+|+.|++++|.|++ +|..   .++|+.|++++|.|++ +|..   ..+|+.|+
T Consensus       361 p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~  428 (788)
T PRK15387        361 PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLS  428 (788)
T ss_pred             Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhh
Confidence            357889999999998 46653   3579999999999985 4443   3578899999999984 6754   34688899


Q ss_pred             ccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC
Q 046036          250 LSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS  285 (614)
Q Consensus       250 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  285 (614)
                      +++|+|+ .+|..+..+++|+.|+|++|+|++.++.
T Consensus       429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            9999999 6899999999999999999999987654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=1.8e-23  Score=201.34  Aligned_cols=250  Identities=18%  Similarity=0.144  Sum_probs=194.8

Q ss_pred             CCc-cccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEeccc-ccCcccCCcChhhhccccccccEEEccCCcccccCC
Q 046036            3 VPQ-EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFS-NNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP   80 (614)
Q Consensus         3 ip~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p   80 (614)
                      ||+ .|+.+++|+.|||++|.|+.+.|++|.++++|.+|-+-+ |+|+...-..   |.+|. .|+.|.+.-|++.-...
T Consensus        82 iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~---F~gL~-slqrLllNan~i~Cir~  157 (498)
T KOG4237|consen   82 IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA---FGGLS-SLQRLLLNANHINCIRQ  157 (498)
T ss_pred             CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH---hhhHH-HHHHHhcChhhhcchhH
Confidence            444 688899999999999999999999999999988877766 9999444444   77787 89999999999998888


Q ss_pred             CCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc----ccce--------------------EecCCCccc
Q 046036           81 AGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL----YSFQ--------------------LNLAENNLT  136 (614)
Q Consensus        81 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~----~l~~--------------------L~L~~N~l~  136 (614)
                      +.|..+++|..|.+-+|.+..+--.+|..+.+++.+.+..+.+    ++..                    ..+.++++.
T Consensus       158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~  237 (498)
T KOG4237|consen  158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN  237 (498)
T ss_pred             HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc
Confidence            8999999999999999999844445899999999998633332    1110                    112233333


Q ss_pred             cccchhhhcc-CCCCeeecccccCCCCCC-CCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCcccc
Q 046036          137 GNIPESLENL-TSLQILNLSCNHLGGSIP-KPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPIT  214 (614)
Q Consensus       137 ~~~~~~~~~l-~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  214 (614)
                      .+.+..|... ..+..=..+.....+.-| ..|..+++|+.|+|++|+|++.-+.+|.++..+++|.|..|+|.......
T Consensus       238 q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~  317 (498)
T KOG4237|consen  238 QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGM  317 (498)
T ss_pred             ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHh
Confidence            2222222211 112111112222222323 34788999999999999999999999999999999999999998877889


Q ss_pred             ccCcccchHHhccCccccccCCccccCCCccceEEccCCcCc
Q 046036          215 LGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       215 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  256 (614)
                      |.++..|+.|+|.+|+|+...|.+|..+..|.+|+|-.|.+.
T Consensus       318 f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  318 FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            999999999999999999999999999999999999999875

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=8.1e-21  Score=192.02  Aligned_cols=160  Identities=19%  Similarity=0.270  Sum_probs=119.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +++.+.|||||++|+|.+.+...    .++..+...|+.++                  +.||||+.++.+||+|||++.
T Consensus       342 ~deLWVVMEym~ggsLTDvVt~~----~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFca  417 (550)
T KOG0578|consen  342 GDELWVVMEYMEGGSLTDVVTKT----RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCA  417 (550)
T ss_pred             cceeEEEEeecCCCchhhhhhcc----cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeee
Confidence            48899999999999999999643    48888888887777                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .+....       ...+..+|||.||| |.  ...|..|.||||+|++++||+-|.+||-...+    +..         
T Consensus       418 qi~~~~-------~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~P----lrA---------  477 (550)
T KOG0578|consen  418 QISEEQ-------SKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENP----LRA---------  477 (550)
T ss_pred             cccccc-------CccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCCh----HHH---------
Confidence            887654       24567899999988 87  67899999999999999999999999863211    110         


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          + -.+...-.+....+...+..+.+       ...+|+..||++||++.|+++
T Consensus       478 ----l-yLIa~ng~P~lk~~~klS~~~kd-------FL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  478 ----L-YLIATNGTPKLKNPEKLSPELKD-------FLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             ----H-HHHhhcCCCCcCCccccCHHHHH-------HHHHHhhcchhcCCCHHHHhc
Confidence                0 01111111111122222222232       334899999999999999986

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.84  E-value=6.4e-21  Score=183.67  Aligned_cols=114  Identities=25%  Similarity=0.323  Sum_probs=94.1

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      .++.++..|||+||+.||+|+.+|...+   .++.....-++.+|                  |+|||||++|+++++||
T Consensus        93 sFQt~~kLylVld~~~GGeLf~hL~~eg---~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDF  169 (357)
T KOG0598|consen   93 SFQTEEKLYLVLDYLNGGELFYHLQREG---RFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDF  169 (357)
T ss_pred             ecccCCeEEEEEeccCCccHHHHHHhcC---CcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEecc
Confidence            3567889999999999999999998543   46665444344443                  99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      |+++......+       .+...|||+.||| |+  ...++..+|.||+||++|||++|.+||..
T Consensus       170 gL~k~~~~~~~-------~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~  227 (357)
T KOG0598|consen  170 GLCKEDLKDGD-------ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYA  227 (357)
T ss_pred             ccchhcccCCC-------ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcC
Confidence            99996554432       2445899999988 88  77899999999999999999999999975

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.84  E-value=3.1e-21  Score=195.66  Aligned_cols=181  Identities=20%  Similarity=0.264  Sum_probs=132.7

Q ss_pred             CCCCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeee
Q 046036          386 SSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYV  447 (614)
Q Consensus       386 ~~~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl  447 (614)
                      +.++|-+.+. ++|.-+|++-||+.+||..+  ..++-.+-++||.||                  +.||+|++++.+||
T Consensus       453 FMG~~~~p~~-AIiTqwCeGsSLY~hlHv~e--tkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkI  529 (678)
T KOG0193|consen  453 FMGACMNPPL-AIITQWCEGSSLYTHLHVQE--TKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKI  529 (678)
T ss_pred             eehhhcCCce-eeeehhccCchhhhhccchh--hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEE
Confidence            5566665555 99999999999999999753  568888888888888                  89999999999999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLH  521 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~  521 (614)
                      +|||++..-..-..     ........|+.-||| |+     .-.|++.+||||||+|+|||+||..||.....+ ..+-
T Consensus       530 gDFGLatvk~~w~g-----~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~d-qIif  603 (678)
T KOG0193|consen  530 GDFGLATVKTRWSG-----EQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRD-QIIF  603 (678)
T ss_pred             ecccceeeeeeecc-----ccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChh-heEE
Confidence            99999864332111     122334567888987 87     357899999999999999999999999732211 1111


Q ss_pred             HHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          522 NFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                      ..-+                +..      ++........+.++|.++...||..++++||.+.+++.+|+.+....
T Consensus       604 mVGr----------------G~l------~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~  657 (678)
T KOG0193|consen  604 MVGR----------------GYL------MPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPSL  657 (678)
T ss_pred             Eecc----------------ccc------CccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhcc
Confidence            0000                000      01111223456667778889999999999999999999998887654

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.83  E-value=1.6e-20  Score=188.90  Aligned_cols=173  Identities=24%  Similarity=0.394  Sum_probs=124.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ...+..++||||+++|+|.+++....             ....++|..+.+++.++                  |+||++
T Consensus        77 ~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~  156 (291)
T cd05094          77 GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLV  156 (291)
T ss_pred             ccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEE
Confidence            34567899999999999999996532             12358999999988887                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      +.++.+||+|||+++........     .......|++.|+| |+  ...++.++|||||||+++||+| |+.||.....
T Consensus       157 ~~~~~~~l~dfg~a~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  231 (291)
T cd05094         157 GANLLVKIGDFGMSRDVYSTDYY-----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSN  231 (291)
T ss_pred             ccCCcEEECCCCcccccCCCcee-----ecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            99999999999999865433211     11223456788977 86  5678899999999999999999 9999864321


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      .                 +.++ .+..........         .....+.++..+|++.+|++||+|.+|+++|+++..
T Consensus       232 ~-----------------~~~~-~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         232 T-----------------EVIE-CITQGRVLERPR---------VCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             H-----------------HHHH-HHhCCCCCCCCc---------cCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence            1                 1111 111111100000         112345578889999999999999999999998854

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.83  E-value=1.4e-20  Score=188.39  Aligned_cols=168  Identities=20%  Similarity=0.335  Sum_probs=121.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCceeeC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVLLD  440 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NILld  440 (614)
                      ..+..++||||+++|+|.+++.....             ...+++.....++.++                  |+||+++
T Consensus        79 ~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~  158 (283)
T cd05048          79 KEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVG  158 (283)
T ss_pred             CCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEc
Confidence            45668999999999999999975321             1457888888887776                  9999999


Q ss_pred             CCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccccc
Q 046036          441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFAD  516 (614)
Q Consensus       441 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~  516 (614)
                      +++.+||+|||+++........     .......+++.|+| |+  ...++.++|||||||+++||+| |+.||......
T Consensus       159 ~~~~~~L~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~  233 (283)
T cd05048         159 EGLTVKISDFGLSRDIYSADYY-----RVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQ  233 (283)
T ss_pred             CCCcEEECCCcceeeccccccc-----cccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            9999999999999865433211     12233467888977 86  5778999999999999999998 99998753211


Q ss_pred             CchHHHHHHhhCCCChHHHHHHHHhcC-cCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          517 CLSLHNFCEMALPESVMELVYSRLLQG-VDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       517 ~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                                       +.. ..+... ....+          ..+...+.++..+||+.+|++||+++||++.|+.
T Consensus       234 -----------------~~~-~~i~~~~~~~~~----------~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         234 -----------------EVI-EMIRSRQLLPCP----------EDCPARVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             -----------------HHH-HHHHcCCcCCCc----------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence                             111 111111 10001          1223445677889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.83  E-value=2.2e-20  Score=186.64  Aligned_cols=169  Identities=22%  Similarity=0.291  Sum_probs=122.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++|+||+++|+|.++++..  ...++|.....++.++                  |+||++++++.+|++|||+++
T Consensus        80 ~~~~~~i~e~~~~gsL~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~  157 (279)
T cd05111          80 GASLQLVTQLSPLGSLLDHVRQH--RDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVAD  157 (279)
T ss_pred             CCccEEEEEeCCCCcHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccce
Confidence            34568999999999999999754  2358898888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........     ...+...|+..|+| |+  ...++.++|||||||++||++| |+.||.+....  ...         
T Consensus       158 ~~~~~~~~-----~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~--~~~---------  221 (279)
T cd05111         158 LLYPDDKK-----YFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH--EVP---------  221 (279)
T ss_pred             eccCCCcc-----cccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHH---------
Confidence            76543221     12234567788977 87  5778999999999999999998 99998753211  111         


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                             ..+..........         .+...+.+++..|+..+|++|||+.|+++.|+.+.+
T Consensus       222 -------~~~~~~~~~~~~~---------~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~  270 (279)
T cd05111         222 -------DLLEKGERLAQPQ---------ICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMAR  270 (279)
T ss_pred             -------HHHHCCCcCCCCC---------CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence                   1111111000000         011234457779999999999999999999988764

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.83  E-value=4.5e-21  Score=189.33  Aligned_cols=166  Identities=30%  Similarity=0.470  Sum_probs=113.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++|||||++|+|.++|+.. ....++|..+.+|+.++                  ++||++++++.+||+|||++
T Consensus        72 ~~~~~~lv~e~~~~g~L~~~L~~~-~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~  150 (259)
T PF07714_consen   72 ENEPLFLVMEYCPGGSLDDYLKSK-NKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLS  150 (259)
T ss_dssp             SSSSEEEEEE--TTEBHHHHHHHT-CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTG
T ss_pred             cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            455689999999999999999875 23568999999999888                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........     .......+...|+| |.  ...++.++||||||+++||++| |+.|+.....              
T Consensus       151 ~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~--------------  211 (259)
T PF07714_consen  151 RPISEKSKY-----KNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDN--------------  211 (259)
T ss_dssp             EETTTSSSE-----EESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCH--------------
T ss_pred             ccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            876322110     11222446667766 77  5668999999999999999999 6788765311              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                         .+.. ..+.+........         .+...+.+++..||+.+|++||+|.++++.|
T Consensus       212 ---~~~~-~~~~~~~~~~~~~---------~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  212 ---EEII-EKLKQGQRLPIPD---------NCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             ---HHHH-HHHHTTEETTSBT---------TSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             ---cccc-ccccccccceecc---------chhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence               1111 1122211111110         1122344677899999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.83  E-value=5.9e-21  Score=175.30  Aligned_cols=164  Identities=22%  Similarity=0.353  Sum_probs=122.6

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..+.+.++|+|.|+.|.|+++|...   ..++.....+|+.++                  |.|||+|+++++||+|||
T Consensus        92 yes~sF~FlVFdl~prGELFDyLts~---VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFG  168 (411)
T KOG0599|consen   92 YESDAFVFLVFDLMPRGELFDYLTSK---VTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFG  168 (411)
T ss_pred             ccCcchhhhhhhhcccchHHHHhhhh---eeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccc
Confidence            56678899999999999999999853   457777777777766                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      +|..+..++        .....||||||.| |.        ...|+...|.||+||+|+-++.|..||.....       
T Consensus       169 Fa~~l~~Ge--------kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQ-------  233 (411)
T KOG0599|consen  169 FACQLEPGE--------KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQ-------  233 (411)
T ss_pred             eeeccCCch--------hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHH-------
Confidence            999988764        3567899999965 75        35688999999999999999999999964211       


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                .-++.-.+.+.+....++....       -..+.++.-.|++.||.+|-|++|+++
T Consensus       234 ----------mlMLR~ImeGkyqF~speWadi-------s~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  234 ----------MLMLRMIMEGKYQFRSPEWADI-------SATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             ----------HHHHHHHHhcccccCCcchhhc-------cccHHHHHHHHHeeCchhcccHHHHhc
Confidence                      1122222333333322222111       222334556889999999999999996

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.83  E-value=3.1e-20  Score=190.53  Aligned_cols=173  Identities=21%  Similarity=0.288  Sum_probs=124.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC------------------------------------------------------
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA------------------------------------------------------  417 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~------------------------------------------------------  417 (614)
                      .+...++||||+++|+|.+++.....                                                      
T Consensus        83 ~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (337)
T cd05054          83 PGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEG  162 (337)
T ss_pred             CCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhh
Confidence            34567899999999999999864211                                                      


Q ss_pred             ----CcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccc
Q 046036          418 ----TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG  475 (614)
Q Consensus       418 ----~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~g  475 (614)
                          ...++|..+.+++.++                  |+||++++++.+||+|||+++.+......     .......+
T Consensus       163 ~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~-----~~~~~~~~  237 (337)
T cd05054         163 DELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY-----VRKGDARL  237 (337)
T ss_pred             hHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcch-----hhccCCCC
Confidence                1268999999888887                  99999999999999999999876543221     12223456


Q ss_pred             cccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCc
Q 046036          476 SIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDE  551 (614)
Q Consensus       476 t~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  551 (614)
                      +..|+| |+  ...++.++|||||||+++|+++ |+.||......                 +.....+.........  
T Consensus       238 ~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~-----------------~~~~~~~~~~~~~~~~--  298 (337)
T cd05054         238 PLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQID-----------------EEFCRRLKEGTRMRAP--  298 (337)
T ss_pred             CccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCcc-----------------HHHHHHHhccCCCCCC--
Confidence            778976 86  6778999999999999999998 99998642111                 1111111111110000  


Q ss_pred             hhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          552 PCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       552 ~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                             ......+.+++.+|++.+|++||++.||+++|+++.+
T Consensus       299 -------~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         299 -------EYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             -------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                   0112345678899999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-20  Score=189.78  Aligned_cols=169  Identities=24%  Similarity=0.303  Sum_probs=124.5

Q ss_pred             CCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecc
Q 046036          388 MDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       388 ~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~D  449 (614)
                      +.|..+...|+|.|||.+|+|.+||+... ...++-...+.+|.||                  +.|+|+.++..+||+|
T Consensus       330 GVCT~EpPFYIiTEfM~yGNLLdYLRecn-r~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvAD  408 (1157)
T KOG4278|consen  330 GVCTHEPPFYIITEFMCYGNLLDYLRECN-RSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVAD  408 (1157)
T ss_pred             hhhccCCCeEEEEecccCccHHHHHHHhc-hhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeec
Confidence            34666777899999999999999998764 3345555556666666                  8999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCccccccc---ccc-cccc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHH
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGS---IGY-NMEW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHN  522 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt---~~y-~aE~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~  522 (614)
                      ||++|++..+..         +.-+|.   ..| +||-  ...++.|+|||+|||+||||.| |..||.+..        
T Consensus       409 FGLsRlMtgDTY---------TAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid--------  471 (1157)
T KOG4278|consen  409 FGLSRLMTGDTY---------TAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID--------  471 (1157)
T ss_pred             cchhhhhcCCce---------ecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCcc--------
Confidence            999999876542         223332   345 4465  6678999999999999999999 888886421        


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                                ...+...+...+..+.+         +-|..++.+++..||+.+|.+||+++|+-+.++.+
T Consensus       472 ----------lSqVY~LLEkgyRM~~P---------eGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtm  523 (1157)
T KOG4278|consen  472 ----------LSQVYGLLEKGYRMDGP---------EGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETM  523 (1157)
T ss_pred             ----------HHHHHHHHhccccccCC---------CCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHH
Confidence                      12233333333322221         24556777888999999999999999999888744

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.82  E-value=3e-20  Score=193.44  Aligned_cols=142  Identities=21%  Similarity=0.269  Sum_probs=98.0

Q ss_pred             ccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc
Q 046036          420 RLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM  481 (614)
Q Consensus       420 ~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a  481 (614)
                      .++|....+++.++                  |+|||+++++.+|++|||+++........     .......++..|+|
T Consensus       210 ~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~-----~~~~~~~~~~~y~a  284 (375)
T cd05104         210 ALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNY-----VVKGNARLPVKWMA  284 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCcccc-----cccCCCCCCcceeC
Confidence            47888888888877                  99999999999999999999866443211     11112345677976


Q ss_pred             -cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHH
Q 046036          482 -EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAK  557 (614)
Q Consensus       482 -E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  557 (614)
                       |+  ...++.++|||||||++|||+| |..||....... ...                ..+..........       
T Consensus       285 PE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~-~~~----------------~~~~~~~~~~~~~-------  340 (375)
T cd05104         285 PESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDS-KFY----------------KMIKEGYRMLSPE-------  340 (375)
T ss_pred             hhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchH-HHH----------------HHHHhCccCCCCC-------
Confidence             87  6678999999999999999998 888886532111 111                1111111100000       


Q ss_pred             HHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          558 IRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       558 ~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                        .....+.+++..|++.+|++||+|.||+++|++
T Consensus       341 --~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         341 --CAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             --CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence              011234567789999999999999999999985

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.82  E-value=3.5e-20  Score=185.84  Aligned_cols=121  Identities=22%  Similarity=0.332  Sum_probs=96.2

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      ++++...|+|+||++||+|.++|+..+   .++......+|.+|                  |+|||||+||+.||+|||
T Consensus       143 FQD~~sLYFvLe~A~nGdll~~i~K~G---sfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFG  219 (604)
T KOG0592|consen  143 FQDEESLYFVLEYAPNGDLLDLIKKYG---SFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFG  219 (604)
T ss_pred             eecccceEEEEEecCCCcHHHHHHHhC---cchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeecc
Confidence            566778999999999999999999654   46665444455555                  999999999999999999


Q ss_pred             cccccCCCCCC----CCCCCcC--cccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTN----PMKGQSN--SAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~----~~~~~~~--~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      -|+.+......    ....+..  ....+||..|.+ |+  ....+..+|+|+|||++|.|+.|++||.+.
T Consensus       220 sAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~  290 (604)
T KOG0592|consen  220 SAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAA  290 (604)
T ss_pred             ccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccc
Confidence            99998754322    0111122  256899999965 88  678889999999999999999999999863

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.82  E-value=5.6e-20  Score=185.16  Aligned_cols=172  Identities=22%  Similarity=0.316  Sum_probs=122.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCC-------------CCCcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPN-------------EATRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~-------------~~~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ..++..++||||+++|+|.++++..             .....++|..+++++.++                  |+||++
T Consensus        86 ~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~  165 (293)
T cd05053          86 TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLV  165 (293)
T ss_pred             cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEE
Confidence            3456789999999999999999642             123468898888888776                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      ++++.+|++|||+++.+......     .......+++.|+| |.  ...++.++|||||||++||+++ |..||.....
T Consensus       166 ~~~~~~kL~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  240 (293)
T cd05053         166 TEDHVMKIADFGLARDIHHIDYY-----RKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV  240 (293)
T ss_pred             cCCCeEEeCccccccccccccce-----eccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCH
Confidence            99999999999999876543211     11222345677976 76  5678899999999999999998 8888864211


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                                       .+.. ..+.........         ..+...+.+++.+|+..+|++||||.|+++.|+.+.
T Consensus       241 -----------------~~~~-~~~~~~~~~~~~---------~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         241 -----------------EELF-KLLKEGYRMEKP---------QNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             -----------------HHHH-HHHHcCCcCCCC---------CCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence                             1111 111111110000         012234567888999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.82  E-value=2.4e-20  Score=194.07  Aligned_cols=143  Identities=23%  Similarity=0.285  Sum_probs=98.1

Q ss_pred             ccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc
Q 046036          420 RLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM  481 (614)
Q Consensus       420 ~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a  481 (614)
                      .++|.+..+|+.++                  |+|||+++++.+||+|||+++........     .......+++.|+|
T Consensus       208 ~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~-----~~~~~~~~~~~y~a  282 (374)
T cd05106         208 PLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNY-----VVKGNARLPVKWMA  282 (374)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcce-----eeccCCCCccceeC
Confidence            47888888887777                  99999999999999999999865433211     11112345677977


Q ss_pred             -cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHH
Q 046036          482 -EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAK  557 (614)
Q Consensus       482 -E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  557 (614)
                       |+  ...++.++|||||||++|||++ |+.||....... ..            ..    .+..........       
T Consensus       283 PE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~-~~------------~~----~~~~~~~~~~~~-------  338 (374)
T cd05106         283 PESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS-KF------------YK----MVKRGYQMSRPD-------  338 (374)
T ss_pred             HHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH-HH------------HH----HHHcccCccCCC-------
Confidence             87  6678999999999999999997 999987532111 00            01    111111100000       


Q ss_pred             HHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          558 IRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       558 ~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                        .....+.+++..|++.+|++|||+.+|+++|+++
T Consensus       339 --~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         339 --FAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             --CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence              0012344677799999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.82  E-value=5.6e-20  Score=182.02  Aligned_cols=169  Identities=22%  Similarity=0.316  Sum_probs=120.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++.... ...++|..+..++.++                  |+||++++++.+|++|||+
T Consensus        72 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~  150 (263)
T cd05052          72 TREPPFYIITEFMTYGNLLDYLRECN-RQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGL  150 (263)
T ss_pred             cCCCCcEEEEEeCCCCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCcc
Confidence            34566799999999999999997542 3458999888887776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......+++.|+| |+  ...++.++|||||||+++||+| |..|+.....+            
T Consensus       151 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~------------  212 (263)
T cd05052         151 SRLMTGDTY------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS------------  212 (263)
T ss_pred             cccccccee------eccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH------------
Confidence            987654321      11122334667966 86  5678899999999999999998 89998642111            


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                           + ....+..........         .....+.+++.+|++.+|++||+|.|++++|+.+
T Consensus       213 -----~-~~~~~~~~~~~~~~~---------~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         213 -----Q-VYELLEKGYRMERPE---------GCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             -----H-HHHHHHCCCCCCCCC---------CCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence                 1 111111111111000         1122345677899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.82  E-value=8.9e-21  Score=185.92  Aligned_cols=166  Identities=22%  Similarity=0.285  Sum_probs=114.4

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC-CCCeeecccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY-DMTAYVGDFGLARF  455 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~-~~~~kl~DfGla~~  455 (614)
                      .+++.|||+++|||.+++.+.+.  .++.....+++.+|                  |+|||++. ++.+||+|||+++.
T Consensus        90 ~~~i~mEy~~~GsL~~~~~~~g~--~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~  167 (313)
T KOG0198|consen   90 EYNIFMEYAPGGSLSDLIKRYGG--KLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKK  167 (313)
T ss_pred             eeEeeeeccCCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccc
Confidence            68999999999999999987642  58888888887777                  99999999 79999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc-c-CCC-CccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V-ARY-QHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~-~~~-~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......    ........||+.||| |+ . +.. ..++||||+||++.||+||+.||.+....               
T Consensus       168 ~~~~~~~----~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~---------------  228 (313)
T KOG0198|consen  168 LESKGTK----SDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEE---------------  228 (313)
T ss_pred             ccccccc----ccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcch---------------
Confidence            7641110    122345789999977 87 3 322 24899999999999999999999752000               


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                       .+.+-........  |.-+...    .++.   -+....|...+|++|||+.+.+..--
T Consensus       229 -~~~~~~ig~~~~~--P~ip~~l----s~~a---~~Fl~~C~~~~p~~Rpta~eLL~hpf  278 (313)
T KOG0198|consen  229 -AEALLLIGREDSL--PEIPDSL----SDEA---KDFLRKCFKRDPEKRPTAEELLEHPF  278 (313)
T ss_pred             -HHHHHHHhccCCC--CCCCccc----CHHH---HHHHHHHhhcCcccCcCHHHHhhChh
Confidence             0111111111111  1000011    1122   23445899999999999999987543

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.5e-20  Score=190.83  Aligned_cols=112  Identities=29%  Similarity=0.453  Sum_probs=92.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +.++.++|||.||+++|.|++++-.++   .+...+..++..||                  |.|+|||.+.+.||+|||
T Consensus        81 we~~~~lylvlEyv~gGELFdylv~kG---~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFG  157 (786)
T KOG0588|consen   81 WENKQHLYLVLEYVPGGELFDYLVRKG---PLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFG  157 (786)
T ss_pred             eccCceEEEEEEecCCchhHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccc
Confidence            456788999999999999999998654   46666665555555                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCC-CccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARY-QHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~-~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +|.+-..+        ....+.||+|.|++ |.  +.+| ..++||||+||||+.|+||+.||++
T Consensus       158 MAsLe~~g--------klLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdD  214 (786)
T KOG0588|consen  158 MASLEVPG--------KLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDD  214 (786)
T ss_pred             eeecccCC--------ccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCC
Confidence            99765443        33556899999966 88  4444 5789999999999999999999985

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.82  E-value=5.2e-20  Score=182.03  Aligned_cols=167  Identities=26%  Similarity=0.341  Sum_probs=119.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.++++... ...+++.++..++.++                  |+||+++.++.+|++|||++
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~  150 (261)
T cd05072          72 KEEPIYIITEYMAKGSLLDFLKSDE-GGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLA  150 (261)
T ss_pred             CCCCcEEEEecCCCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccc
Confidence            4566799999999999999997542 3457888887776666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......      .......++..|+| |+  ...++.++|||||||++|||+| |+.||......  ..         
T Consensus       151 ~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~--~~---------  213 (261)
T cd05072         151 RVIEDNEY------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS--DV---------  213 (261)
T ss_pred             eecCCCce------eccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH--HH---------
Confidence            87654321      11223446678977 87  5678889999999999999999 99998642211  01         


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                             ...+...... +..        ......+.+++.+|++.+|++||+|.++.+.|+.
T Consensus       214 -------~~~~~~~~~~-~~~--------~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         214 -------MSALQRGYRM-PRM--------ENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             -------HHHHHcCCCC-CCC--------CCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                   1111111110 000        0112234567889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.82  E-value=3.6e-20  Score=172.44  Aligned_cols=111  Identities=25%  Similarity=0.398  Sum_probs=96.1

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +...++.+|||||+++|.|+++|+..   ++++.+...-+|.+|                  |+|||||.+|..||.|||
T Consensus       113 ~~d~~~lymvmeyv~GGElFS~Lrk~---~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFG  189 (355)
T KOG0616|consen  113 FKDNSNLYMVMEYVPGGELFSYLRKS---GRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFG  189 (355)
T ss_pred             eccCCeEEEEEeccCCccHHHHHHhc---CCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEecc
Confidence            45677899999999999999999864   357777777677766                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +|+.....          +.+.||||.|+| |.  ...+...+|.|||||++|||+.|.+||...
T Consensus       190 FAK~v~~r----------T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~  244 (355)
T KOG0616|consen  190 FAKRVSGR----------TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDD  244 (355)
T ss_pred             ceEEecCc----------EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCC
Confidence            99977643          456899999976 87  778999999999999999999999999763

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.82  E-value=2.7e-20  Score=186.49  Aligned_cols=182  Identities=20%  Similarity=0.239  Sum_probs=121.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+++|+|.+++...    .++|..+..++.++                  |+||++++++.+|++|||+++
T Consensus        80 ~~~~~lv~e~~~~~~l~~~~~~~----~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~  155 (283)
T cd05080          80 GKGLQLIMEYVPLGSLRDYLPKH----KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAK  155 (283)
T ss_pred             CceEEEEecCCCCCCHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeeccccc
Confidence            34578999999999999999743    48999998888877                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ........    ........++..|+| |.  ...++.++|||||||+++||+||+.|+............+.   ....
T Consensus       156 ~~~~~~~~----~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~---~~~~  228 (283)
T cd05080         156 AVPEGHEY----YRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPK---QGQM  228 (283)
T ss_pred             ccCCcchh----hccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhccc---cccc
Confidence            76543211    001112334556766 76  56788999999999999999999999864321111111100   0000


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                      ....+.+.+...... + ..       ......+.+++..|++.+|++||||++|+..|+++.
T Consensus       229 ~~~~~~~~~~~~~~~-~-~~-------~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         229 TVVRLIELLERGMRL-P-CP-------KNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             chhhhhhhhhcCCCC-C-CC-------CCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            000111111111100 0 00       012234567888999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.81  E-value=4.4e-20  Score=192.86  Aligned_cols=144  Identities=21%  Similarity=0.287  Sum_probs=100.7

Q ss_pred             ccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc
Q 046036          420 RLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM  481 (614)
Q Consensus       420 ~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a  481 (614)
                      .++|..+.+++.++                  |+|||+++++.+|++|||+++........     .......+++.|+|
T Consensus       233 ~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~-----~~~~~~~~~~~y~a  307 (400)
T cd05105         233 GLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNY-----VSKGSTFLPVKWMA  307 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccc-----cccCCcCCCcceEC
Confidence            47787777777776                  99999999999999999999876443221     12233457788976


Q ss_pred             -cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHH
Q 046036          482 -EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAK  557 (614)
Q Consensus       482 -E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  557 (614)
                       |.  ...++.++|||||||++|||++ |..||.....+.                 .+...+.......  ..      
T Consensus       308 PE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~-----------------~~~~~~~~~~~~~--~~------  362 (400)
T cd05105         308 PESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDS-----------------TFYNKIKSGYRMA--KP------  362 (400)
T ss_pred             hhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhH-----------------HHHHHHhcCCCCC--CC------
Confidence             86  6678999999999999999997 999987532111                 1111111111100  00      


Q ss_pred             HHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          558 IRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       558 ~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                       ......+.+++..|++.+|++||++.+|+++|+++.
T Consensus       363 -~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         363 -DHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLL  398 (400)
T ss_pred             -ccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence             112234557888999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.81  E-value=2.7e-20  Score=199.79  Aligned_cols=166  Identities=20%  Similarity=0.232  Sum_probs=118.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      ..++..++||||+++|+|.++++... ....+++.....++.++                  |+|||++.++.+||+|||
T Consensus       135 ~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFg  214 (478)
T PTZ00267        135 KSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFG  214 (478)
T ss_pred             EECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCc
Confidence            44678999999999999999886432 23357777777766665                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++........     ......+||++|+| |+  ...++.++|||||||+++||+||+.||.....             
T Consensus       215 la~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~-------------  276 (478)
T PTZ00267        215 FSKQYSDSVSL-----DVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ-------------  276 (478)
T ss_pred             CceecCCcccc-----ccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-------------
Confidence            99876543211     12334679999977 87  66789999999999999999999999964211             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          .+.+...+.+...+.+..          ....+.+++..|++.+|++||++++++.
T Consensus       277 ----~~~~~~~~~~~~~~~~~~----------~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        277 ----REIMQQVLYGKYDPFPCP----------VSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             ----HHHHHHHHhCCCCCCCcc----------CCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence                122222222222111110          1123445667899999999999999874

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.81  E-value=7e-20  Score=180.57  Aligned_cols=166  Identities=21%  Similarity=0.274  Sum_probs=118.4

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++||||+++|+|.++++...  ..++|..+..++.++                  |+||++++++.+|++|||
T Consensus        68 ~~~~~~~~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g  145 (256)
T cd05114          68 CTQQKPLYIVTEFMENGCLLNYLRQRQ--GKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFG  145 (256)
T ss_pred             EccCCCEEEEEEcCCCCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCC
Confidence            344567899999999999999997542  258888888887766                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      .++.......      .......++..|+| |+  ...++.++|||||||+++|+++ |+.||.....            
T Consensus       146 ~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~------------  207 (256)
T cd05114         146 MTRYVLDDEY------TSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN------------  207 (256)
T ss_pred             CccccCCCce------eccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH------------
Confidence            9986543221      11222345667876 87  5678899999999999999999 8999864321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                           .+.+...........+..          ....+.+++.+|++.+|++||+|.|+++.|
T Consensus       208 -----~~~~~~i~~~~~~~~~~~----------~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         208 -----YEVVEMISRGFRLYRPKL----------ASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             -----HHHHHHHHCCCCCCCCCC----------CCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence                 111111111111111111          112456788899999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.81  E-value=7.5e-20  Score=183.70  Aligned_cols=174  Identities=21%  Similarity=0.330  Sum_probs=124.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC----------CCcccCHHHHHHHHhhC------------------CCceeeCCC
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE----------ATRRLDLAEGLKIAVDI------------------PSNVLLDYD  442 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~----------~~~~l~~~~~~~ia~~i------------------~~NILld~~  442 (614)
                      ...+..++||||+++|+|.+++...+          ....++|..+.+++.++                  |+||+++++
T Consensus        77 ~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~  156 (288)
T cd05093          77 VEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGEN  156 (288)
T ss_pred             ecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccC
Confidence            34567899999999999999987432          12358999998888777                  999999999


Q ss_pred             CCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCc
Q 046036          443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCL  518 (614)
Q Consensus       443 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~  518 (614)
                      +.+|++|||+++........     .......+++.|+| |+  ...++.++|||||||+++||+| |+.||......  
T Consensus       157 ~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~--  229 (288)
T cd05093         157 LLVKIGDFGMSRDVYSTDYY-----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--  229 (288)
T ss_pred             CcEEeccCCccccccCCcee-----ecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--
Confidence            99999999999866433211     11223445778966 87  5678899999999999999999 89998643211  


Q ss_pred             hHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          519 SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       519 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                                     +.......+.....+.          .....+.++...|++.+|.+|||+.||.+.|+.+...
T Consensus       230 ---------------~~~~~i~~~~~~~~~~----------~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         230 ---------------EVIECITQGRVLQRPR----------TCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             ---------------HHHHHHHcCCcCCCCC----------CCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence                           1111111111110010          1112356788899999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.81  E-value=3.4e-20  Score=190.12  Aligned_cols=175  Identities=20%  Similarity=0.248  Sum_probs=124.6

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..+...++|||+|+||+|.++|....  ..++..++++++.++                  ++|+|++.+..+||||||
T Consensus       230 a~~~~Pl~ivmEl~~gGsL~~~L~k~~--~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFG  307 (474)
T KOG0194|consen  230 AVLEEPLMLVMELCNGGSLDDYLKKNK--KSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFG  307 (474)
T ss_pred             EcCCCccEEEEEecCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccc
Confidence            345677899999999999999998653  268999999888777                  899999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +++.-.....       ......-...|+| |.  .+.++.++|||||||++||+.+ |..||.+....  .+..+    
T Consensus       308 Ls~~~~~~~~-------~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~--~v~~k----  374 (474)
T KOG0194|consen  308 LSRAGSQYVM-------KKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNY--EVKAK----  374 (474)
T ss_pred             cccCCcceee-------ccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHH--HHHHH----
Confidence            9876542111       0101112345654 76  6789999999999999999999 88899764321  11111    


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                                 ..........+.         .....+..+...||..+|++||+|.+|.+.++.+......
T Consensus       375 -----------I~~~~~r~~~~~---------~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~~  426 (474)
T KOG0194|consen  375 -----------IVKNGYRMPIPS---------KTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKEA  426 (474)
T ss_pred             -----------HHhcCccCCCCC---------CCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhcccc
Confidence                       112222211111         1122233455599999999999999999999999877553

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.81  E-value=3.3e-20  Score=199.16  Aligned_cols=163  Identities=23%  Similarity=0.329  Sum_probs=117.6

Q ss_pred             ceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ..++||||+++|+|.++++... ....+++.....++.++                  |+|||++.++.+||+|||+++.
T Consensus       113 ~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~  192 (496)
T PTZ00283        113 MIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKM  192 (496)
T ss_pred             EEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEecccCee
Confidence            4689999999999999997532 23457777777776666                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      +......     ......+||+.|+| |+  ...++.++|||||||++|||++|+.||....                 .
T Consensus       193 ~~~~~~~-----~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~-----------------~  250 (496)
T PTZ00283        193 YAATVSD-----DVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN-----------------M  250 (496)
T ss_pred             ccccccc-----cccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-----------------H
Confidence            6543211     12334689999977 87  5678999999999999999999999997421                 1


Q ss_pred             HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          533 MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       533 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      .+.+...+.....+.+..          ....+.++...|++.+|++||++.+++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~----------~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        251 EEVMHKTLAGRYDPLPPS----------ISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             HHHHHHHhcCCCCCCCCC----------CCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            222333332222111111          11234456779999999999999999863

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.81  E-value=1e-19  Score=183.02  Aligned_cols=173  Identities=21%  Similarity=0.326  Sum_probs=122.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC---------------------CCcccCHHHHHHHHhhC----------------
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE---------------------ATRRLDLAEGLKIAVDI----------------  433 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~---------------------~~~~l~~~~~~~ia~~i----------------  433 (614)
                      ..++..++||||+++|+|.+++....                     ....++|.+...++.++                
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~d  152 (290)
T cd05045          73 SQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRD  152 (290)
T ss_pred             ecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhh
Confidence            44567899999999999999986421                     12358888888887777                


Q ss_pred             --CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CC
Q 046036          434 --PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GK  507 (614)
Q Consensus       434 --~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~  507 (614)
                        |+||++++++.+||+|||+++........     .......++..|+| |+  ...++.++|||||||+++||+| |+
T Consensus       153 ikp~nill~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~  227 (290)
T cd05045         153 LAARNVLVAEGRKMKISDFGLSRDVYEEDSY-----VKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGG  227 (290)
T ss_pred             hhhheEEEcCCCcEEeccccccccccCccch-----hcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCC
Confidence              99999999999999999999866433221     11223445677876 76  6678899999999999999999 99


Q ss_pred             CCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHH
Q 046036          508 RPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMV  587 (614)
Q Consensus       508 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~  587 (614)
                      .||......  .+                ...+..........         .....+.+++..|++.+|++||++.|++
T Consensus       228 ~p~~~~~~~--~~----------------~~~~~~~~~~~~~~---------~~~~~~~~~i~~cl~~~P~~Rp~~~~i~  280 (290)
T cd05045         228 NPYPGIAPE--RL----------------FNLLKTGYRMERPE---------NCSEEMYNLMLTCWKQEPDKRPTFADIS  280 (290)
T ss_pred             CCCCCCCHH--HH----------------HHHHhCCCCCCCCC---------CCCHHHHHHHHHHccCCcccCCCHHHHH
Confidence            998642211  11                11111111111111         1123455678899999999999999999


Q ss_pred             HHHHHhHH
Q 046036          588 MEMNVIKE  595 (614)
Q Consensus       588 ~~L~~i~~  595 (614)
                      +.|+++-.
T Consensus       281 ~~l~~~~~  288 (290)
T cd05045         281 KELEKMMV  288 (290)
T ss_pred             HHHHHHHh
Confidence            99988753

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.81  E-value=9.6e-20  Score=179.58  Aligned_cols=164  Identities=24%  Similarity=0.296  Sum_probs=118.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.++++... ...++|..+.+++.++                  |+||++++++.+|++|||++
T Consensus        71 ~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~  149 (256)
T cd05082          71 EKGGLYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLT  149 (256)
T ss_pred             CCCceEEEEECCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccc
Confidence            3456799999999999999997542 3358888888887777                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +......          ....++..|+| |+  ...++.++|||||||+++||++ |+.||.....              
T Consensus       150 ~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~--------------  205 (256)
T cd05082         150 KEASSTQ----------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--------------  205 (256)
T ss_pred             eeccccC----------CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCH--------------
Confidence            7554321          12345667977 87  5678899999999999999998 9999864211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                          +.+.+.+.........+         .....+.++...|++.+|++|||+.++++.|+.+
T Consensus       206 ----~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         206 ----KDVVPRVEKGYKMDAPD---------GCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             ----HHHHHHHhcCCCCCCCC---------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence                11111122211111000         1123345677899999999999999999998753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=6e-20  Score=180.01  Aligned_cols=175  Identities=19%  Similarity=0.216  Sum_probs=119.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+++.++||.||.+||+.+.+...- ...++......|..++                  +.|||||++|.+|++|||.+
T Consensus        95 v~~~LWvVmpfMa~GS~ldIik~~~-~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvs  173 (516)
T KOG0582|consen   95 VDSELWVVMPFMAGGSLLDIIKTYY-PDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVS  173 (516)
T ss_pred             ecceeEEeehhhcCCcHHHHHHHHc-cccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceee
Confidence            4678999999999999999997543 2237776666666665                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ..+......   ........+||+.||| |+    ...|+.|+||||||+...|+.+|..||....+-...+... ....
T Consensus       174 a~l~~~G~R---~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tL-qn~p  249 (516)
T KOG0582|consen  174 ASLFDSGDR---QVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTL-QNDP  249 (516)
T ss_pred             eeecccCce---eeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHh-cCCC
Confidence            877654321   1112255789999977 87    5679999999999999999999999998754432221111 1111


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      |.......+.           +      ....--+.+-+..-.|++.||++|||+++.++
T Consensus       250 p~~~t~~~~~-----------d------~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  250 PTLLTSGLDK-----------D------EDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             CCcccccCCh-----------H------HhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            1000000000           0      00011112233445899999999999999985

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.81  E-value=1.3e-19  Score=179.63  Aligned_cols=167  Identities=22%  Similarity=0.385  Sum_probs=120.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++....  ..++|..+.+++.++                  |+||++++++.+|++|||++
T Consensus        76 ~~~~~~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~  153 (266)
T cd05033          76 KSRPVMIITEYMENGSLDKFLREND--GKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLS  153 (266)
T ss_pred             cCCceEEEEEcCCCCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchh
Confidence            4566899999999999999997642  368899888887766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........     .......+++.|+| |+  ...++.++||||||++++|+++ |..||......             
T Consensus       154 ~~~~~~~~~-----~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~-------------  215 (266)
T cd05033         154 RRLEDSEAT-----YTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQ-------------  215 (266)
T ss_pred             hcccccccc-----eeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHH-------------
Confidence            877522211     11222345678966 76  5678899999999999999998 99998643211             


Q ss_pred             CChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          530 ESVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                          +.. ..+..... +.+.          .....+.+++..|++.+|++||+|.||+++|+++
T Consensus       216 ----~~~-~~~~~~~~~~~~~----------~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         216 ----DVI-KAVEDGYRLPPPM----------DCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             ----HHH-HHHHcCCCCCCCC----------CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                111 11111111 1111          1123455788899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.81  E-value=6.6e-20  Score=183.78  Aligned_cols=165  Identities=23%  Similarity=0.319  Sum_probs=117.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++.... ...+++..+..++.++                  |+|||+++++.+||+|||+
T Consensus        70 ~~~~~~~lv~e~~~~g~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~  148 (285)
T cd05631          70 ETKDALCLVLTIMNGGDLKFHIYNMG-NPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGL  148 (285)
T ss_pred             ccCCeEEEEEEecCCCcHHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCC
Confidence            44667899999999999998886432 3358888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......        ......||+.|+| |+  ...++.++|||||||++|||++|+.||.......            
T Consensus       149 ~~~~~~~~--------~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~------------  208 (285)
T cd05631         149 AVQIPEGE--------TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERV------------  208 (285)
T ss_pred             cEEcCCCC--------eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcch------------
Confidence            98754322        1234579999977 87  6688999999999999999999999997532110            


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCC-----HHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMG-----VREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPs-----m~ev~~  588 (614)
                        ..+.++..+.......+.   .+       ...+.++...|++.+|++||+     ++|+++
T Consensus       209 --~~~~~~~~~~~~~~~~~~---~~-------s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         209 --KREEVDRRVKEDQEEYSE---KF-------SEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             --hHHHHHHHhhcccccCCc---cC-------CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence              111222222111110000   01       123345677999999999997     788875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.81  E-value=4.5e-20  Score=186.89  Aligned_cols=175  Identities=18%  Similarity=0.243  Sum_probs=117.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCC----------------CCcccCHHHHHHHHhhC------------------CCce
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE----------------ATRRLDLAEGLKIAVDI------------------PSNV  437 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~----------------~~~~l~~~~~~~ia~~i------------------~~NI  437 (614)
                      ..+..++||||+++|+|.+++....                ....++|....+++.++                  |+||
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Ni  169 (304)
T cd05096          90 DEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNC  169 (304)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCcchhhe
Confidence            4566899999999999999986421                11347888888887777                  9999


Q ss_pred             eeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh--CCCCCCc
Q 046036          438 LLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT--GKRPTDE  512 (614)
Q Consensus       438 Lld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt--G~~p~~~  512 (614)
                      |+++++.+||+|||+++.+......     .......+++.|+| |+  ...++.++|||||||+++||++  +..||..
T Consensus       170 ll~~~~~~kl~DfG~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~  244 (304)
T cd05096         170 LVGENLTIKIADFGMSRNLYAGDYY-----RIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGE  244 (304)
T ss_pred             EEcCCccEEECCCccceecccCcee-----EecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCc
Confidence            9999999999999999866443211     11223456788977 87  6678999999999999999997  4566654


Q ss_pred             ccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          513 MFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                      ....  .....+...        ............+.          .+...+.+++..||+.+|++||||.||.+.|+
T Consensus       245 ~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~----------~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         245 LTDE--QVIENAGEF--------FRDQGRQVYLFRPP----------PCPQGLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             CCHH--HHHHHHHHH--------hhhccccccccCCC----------CCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence            2211  111111100        00000000000010          11234567888999999999999999998875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.81  E-value=1e-19  Score=180.42  Aligned_cols=166  Identities=17%  Similarity=0.302  Sum_probs=118.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++....  ..++|..+..++.++                  |+||+++.++.+|++|||.+
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~  154 (266)
T cd05064          77 RGNTMMIVTEYMSNGALDSFLRKHE--GQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRL  154 (266)
T ss_pred             cCCCcEEEEEeCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCccc
Confidence            4567899999999999999997542  358899888888877                  99999999999999999987


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ........      .......++..|+| |.  ...++.++|||||||+++|+++ |+.||......             
T Consensus       155 ~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~-------------  215 (266)
T cd05064         155 QEDKSEAI------YTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQ-------------  215 (266)
T ss_pred             ccccccch------hcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHH-------------
Confidence            65432211      11112345678876 86  6788999999999999999775 99999753211             


Q ss_pred             CChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          530 ESVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                          +.+. .+.+... +.+          ..+...+.+++..||+.+|++||++.|+.+.|..+
T Consensus       216 ----~~~~-~~~~~~~~~~~----------~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         216 ----DVIK-AVEDGFRLPAP----------RNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             ----HHHH-HHHCCCCCCCC----------CCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence                1111 1111111 111          11223455677899999999999999999988754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.81  E-value=1.2e-19  Score=179.35  Aligned_cols=168  Identities=26%  Similarity=0.362  Sum_probs=120.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++.... ...++|..+.+++.++                  |+||++++++.+||+|||+
T Consensus        71 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~  149 (261)
T cd05068          71 TLEEPIYIVTELMKYGSLLEYLQGGA-GRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGL  149 (261)
T ss_pred             ecCCCeeeeeecccCCcHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcce
Confidence            34566899999999999999997643 4468999988888777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......++..|+| |+  ...++.++|||||||+++|++| |+.||......            
T Consensus       150 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~------------  211 (261)
T cd05068         150 ARVIKEDIY------EAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNA------------  211 (261)
T ss_pred             EEEccCCcc------cccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH------------
Confidence            987753321      11122233457866 87  5678899999999999999999 99998643110            


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                           +.. ..+.........         ......+.+++.+|++.+|++||+|.++++.|+.
T Consensus       212 -----~~~-~~~~~~~~~~~~---------~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         212 -----EVL-QQVDQGYRMPCP---------PGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             -----HHH-HHHHcCCCCCCC---------CcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence                 011 111111110000         0122345568889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.81  E-value=1.4e-19  Score=179.68  Aligned_cols=169  Identities=19%  Similarity=0.334  Sum_probs=119.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.+++....  ..++|.++..++.++                  |+||++++++.+|++|||++
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~  154 (268)
T cd05063          77 KFKPAMIITEYMENGALDKYLRDHD--GEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLS  154 (268)
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccc
Confidence            4466899999999999999997532  358888888887776                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........    .........++.|+| |+  ...++.++|||||||++||++| |+.||......             
T Consensus       155 ~~~~~~~~~----~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~-------------  217 (268)
T cd05063         155 RVLEDDPEG----TYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNH-------------  217 (268)
T ss_pred             eeccccccc----ceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHH-------------
Confidence            866543221    011111233457876 76  5678899999999999999998 99998642211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                          +.. ..+..... .+..        .+....+.+++..|++.+|++||+|.+|++.|+++
T Consensus       218 ----~~~-~~i~~~~~-~~~~--------~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         218 ----EVM-KAINDGFR-LPAP--------MDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             ----HHH-HHHhcCCC-CCCC--------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                111 11111110 0000        11223456788899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.81  E-value=9.7e-20  Score=181.81  Aligned_cols=169  Identities=19%  Similarity=0.275  Sum_probs=118.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC-------CcccCHHHHHHHHhhC------------------CCceeeCCCCCe
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA-------TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTA  445 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~-------~~~l~~~~~~~ia~~i------------------~~NILld~~~~~  445 (614)
                      ..+...++||||+++|+|.++++....       ...++|..+..++.++                  |+||++++++.+
T Consensus        79 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~  158 (277)
T cd05062          79 SQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTV  158 (277)
T ss_pred             cCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCE
Confidence            345678999999999999999875321       2346788877776666                  999999999999


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHH
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLH  521 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~  521 (614)
                      |++|||+++........     .......+++.|+| |+  ...++.++|||||||+++||++ |..||......     
T Consensus       159 ~l~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~-----  228 (277)
T cd05062         159 KIGDFGMTRDIYETDYY-----RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNE-----  228 (277)
T ss_pred             EECCCCCccccCCccee-----ecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH-----
Confidence            99999999865433211     11122456788977 87  5678999999999999999999 68888643211     


Q ss_pred             HHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          522 NFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                                  +..+..........+.          .....+.+++.+|++.+|++|||+.|++..|+
T Consensus       229 ------------~~~~~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         229 ------------QVLRFVMEGGLLDKPD----------NCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             ------------HHHHHHHcCCcCCCCC----------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence                        1111111111111111          11224556888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.81  E-value=1.1e-19  Score=179.60  Aligned_cols=168  Identities=24%  Similarity=0.321  Sum_probs=121.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.++++... ...++|.++.+++.++                  |+||++++++.+|++|||+
T Consensus        72 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~  150 (261)
T cd05148          72 SVGEPVYIITELMEKGSLLAFLRSPE-GQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGL  150 (261)
T ss_pred             ecCCCeEEEEeecccCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccc
Confidence            34567899999999999999998643 3468888888887766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......       ......++..|+| |.  ...++.++|||||||+++|+++ |+.||.....             
T Consensus       151 ~~~~~~~~~-------~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~-------------  210 (261)
T cd05148         151 ARLIKEDVY-------LSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNN-------------  210 (261)
T ss_pred             hhhcCCccc-------cccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCH-------------
Confidence            987654321       1223446678866 76  5678899999999999999999 8999865321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                          .+.++........+.+          ..+...+.+++.+|++.+|++|||++++.+.|+.+
T Consensus       211 ----~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         211 ----HEVYDQITAGYRMPCP----------AKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             ----HHHHHHHHhCCcCCCC----------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence                1111111111000000          01123455778899999999999999999999853

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-20  Score=189.08  Aligned_cols=178  Identities=17%  Similarity=0.271  Sum_probs=125.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      |-.++..++|+|||++|+|.++|..+.... ..-...++|+.||                  +.|+|+|+++++||+|||
T Consensus       604 C~~DePicmI~EYmEnGDLnqFl~aheapt-~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfg  682 (807)
T KOG1094|consen  604 CVQDDPLCMITEYMENGDLNQFLSAHELPT-AETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFG  682 (807)
T ss_pred             eecCCchHHHHHHHhcCcHHHHHHhccCcc-cccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcc
Confidence            555777899999999999999998764222 3334445566666                  899999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh--CCCCCCcccccCchHHHHHHh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT--GKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt--G~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ++|-+...+.+     ......+-...||| |-  .+++++++|||+|||.+||+++  ..+||.+...+.  .++-...
T Consensus       683 msR~lysg~yy-----~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~--vven~~~  755 (807)
T KOG1094|consen  683 MSRNLYSGDYY-----RVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQ--VVENAGE  755 (807)
T ss_pred             cccccccCCce-----eeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHH--HHHhhhh
Confidence            99987776654     23333445567888 76  8899999999999999999876  788987643221  1111111


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                      .++.            ....-...||      .-|...+.++++.||..+.++||+++++..-|++.
T Consensus       756 ~~~~------------~~~~~~l~~P------~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  756 FFRD------------QGRQVVLSRP------PACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             hcCC------------CCcceeccCC------CcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence            1111            1100001122      23455667899999999999999999999988753

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.80  E-value=1.6e-19  Score=183.16  Aligned_cols=176  Identities=22%  Similarity=0.306  Sum_probs=123.7

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCcee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVL  438 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NIL  438 (614)
                      +...+..++||||+++|+|.+++.....             ...++|.++.+++.++                  |+||+
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  172 (307)
T cd05098          93 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  172 (307)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheE
Confidence            3445678999999999999999975421             2358898888888776                  99999


Q ss_pred             eCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccc
Q 046036          439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMF  514 (614)
Q Consensus       439 ld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~  514 (614)
                      ++.++.+|++|||+++........     .......+++.|+| |.  ...++.++|||||||++|||++ |+.||....
T Consensus       173 l~~~~~~kL~dfg~a~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~  247 (307)
T cd05098         173 VTEDNVMKIADFGLARDIHHIDYY-----KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP  247 (307)
T ss_pred             EcCCCcEEECCCcccccccccchh-----hccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC
Confidence            999999999999999866432211     11122334567877 76  5678899999999999999998 888885421


Q ss_pred             ccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                      .                 .+.. ..+.........         ......+.+++..|++.+|++||+|.||++.|+++.
T Consensus       248 ~-----------------~~~~-~~~~~~~~~~~~---------~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~  300 (307)
T cd05098         248 V-----------------EELF-KLLKEGHRMDKP---------SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  300 (307)
T ss_pred             H-----------------HHHH-HHHHcCCCCCCC---------CcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence            1                 1111 111111110000         011234456778999999999999999999999987


Q ss_pred             HHh
Q 046036          595 EVL  597 (614)
Q Consensus       595 ~~~  597 (614)
                      ...
T Consensus       301 ~~~  303 (307)
T cd05098         301 ALT  303 (307)
T ss_pred             HHh
Confidence            654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.80  E-value=2e-19  Score=182.14  Aligned_cols=174  Identities=20%  Similarity=0.292  Sum_probs=123.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ...+..++||||+++|+|.+++.....             ...++|.++..++.++                  |+||++
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili  170 (304)
T cd05101          91 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLV  170 (304)
T ss_pred             ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEE
Confidence            345678999999999999999975421             2357888888777766                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      ++++.+|++|||+++........     .......+++.|+| |.  ...++.++|||||||++||++| |..||.....
T Consensus       171 ~~~~~~kl~D~g~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  245 (304)
T cd05101         171 TENNVMKIADFGLARDVNNIDYY-----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV  245 (304)
T ss_pred             cCCCcEEECCCccceeccccccc-----ccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH
Confidence            99999999999999876543221     11223456778977 76  5678999999999999999999 7788754211


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                                       .+... .+.........         ..+...+.+++..|++.+|++||+|.||++.|+++..
T Consensus       246 -----------------~~~~~-~~~~~~~~~~~---------~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~  298 (304)
T cd05101         246 -----------------EELFK-LLKEGHRMDKP---------ANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILT  298 (304)
T ss_pred             -----------------HHHHH-HHHcCCcCCCC---------CCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHH
Confidence                             11111 11111110000         1122345567789999999999999999999988765


Q ss_pred             H
Q 046036          596 V  596 (614)
Q Consensus       596 ~  596 (614)
                      .
T Consensus       299 ~  299 (304)
T cd05101         299 L  299 (304)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.80  E-value=2.1e-19  Score=177.25  Aligned_cols=168  Identities=20%  Similarity=0.293  Sum_probs=118.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++...  ...+++..+.+++.++                  |+||+++.++.+|++|||+++
T Consensus        66 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~  143 (257)
T cd05115          66 AEALMLVMEMASGGPLNKFLSGK--KDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSK  143 (257)
T ss_pred             CCCeEEEEEeCCCCCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccc
Confidence            34678999999999999999753  2358888888888877                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........    ....+...+++.|+| |+  ...++.++|||||||+++|+++ |+.||......              
T Consensus       144 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--------------  205 (257)
T cd05115         144 ALGADDSY----YKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGP--------------  205 (257)
T ss_pred             cccCCccc----eeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHH--------------
Confidence            65443221    011222234567866 76  5678899999999999999996 99999753211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                         + +...+.........         ..+...+.++...||+.+|++||++.+|.+.|+.+
T Consensus       206 ---~-~~~~~~~~~~~~~~---------~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         206 ---E-VMSFIEQGKRLDCP---------AECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             ---H-HHHHHHCCCCCCCC---------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence               1 11111111110000         01123444677899999999999999999998754

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.80  E-value=2.1e-19  Score=178.85  Aligned_cols=167  Identities=24%  Similarity=0.299  Sum_probs=118.9

Q ss_pred             ceeEEecccCCCchhhhccCCC---CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNE---ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~---~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..++||||+++|+|.+++....   ....+++.....++.++                  |+||++++++.+||+|||++
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  160 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS  160 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccce
Confidence            4689999999999999986432   23468888888877776                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........     .......++..|+| |+  ...++.++|||||||+++||++ |..||.....              
T Consensus       161 ~~~~~~~~~-----~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~--------------  221 (273)
T cd05035         161 KKIYSGDYY-----RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN--------------  221 (273)
T ss_pred             eeccccccc-----cccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH--------------
Confidence            876543321     11112334667866 76  5678899999999999999999 8888864221              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                         .+..+..........+          ......+.+++.+|++.+|++||++.||++.|+++
T Consensus       222 ---~~~~~~~~~~~~~~~~----------~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         222 ---HEIYDYLRHGNRLKQP----------EDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             ---HHHHHHHHcCCCCCCC----------cCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence               1111111111111111          11233456777899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.80  E-value=1.4e-19  Score=181.42  Aligned_cols=184  Identities=21%  Similarity=0.300  Sum_probs=120.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+++|+|.+++....  ..++|..+..++.++                  |+||++++++.+|++|||+++
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~  156 (284)
T cd05081          79 RRNLRLVMEYLPYGSLRDYLQKHR--ERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTK  156 (284)
T ss_pred             CCceEEEEEecCCCCHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccc
Confidence            456789999999999999997532  358898888888776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC-C
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP-E  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~-~  530 (614)
                      ........    ........++..|+| |+  ...++.++|||||||+++||++|..|+......   .......... .
T Consensus       157 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~---~~~~~~~~~~~~  229 (284)
T cd05081         157 VLPQDKEY----YKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAE---FMRMMGNDKQGQ  229 (284)
T ss_pred             cccCCCcc----eeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchh---hhhhcccccccc
Confidence            76543221    001111233445755 87  567889999999999999999998775432110   0000000000 0


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                      .....+...+.........         ......+.+++.+|++.+|++||||.||+++|+.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~~  284 (284)
T cd05081         230 MIVYHLIELLKNNGRLPAP---------PGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAIR  284 (284)
T ss_pred             cchHHHHHHHhcCCcCCCC---------CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhcC
Confidence            1111111222222111100         011234567888999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=5.9e-20  Score=181.41  Aligned_cols=182  Identities=15%  Similarity=0.124  Sum_probs=129.7

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++|||||+. +|++.+.++  .+.++......|+.||                  |+|||+.....+||+|||+||..
T Consensus        84 ~L~fVfE~Md~-NLYqLmK~R--~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev  160 (538)
T KOG0661|consen   84 ILYFVFEFMDC-NLYQLMKDR--NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREV  160 (538)
T ss_pred             eEeeeHHhhhh-hHHHHHhhc--CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEeccccccccc
Confidence            89999999999 999999876  5679999988888888                  99999999999999999999987


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCch--HHHHHHhhCCC
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLS--LHNFCEMALPE  530 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~--l~~~~~~~~~~  530 (614)
                      ....        -.|..+.|.+|.| |.   .+.|+.+.|+||+|||++|+.+-++-|.+..+-++.  +..........
T Consensus       161 ~Skp--------PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~  232 (538)
T KOG0661|consen  161 RSKP--------PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKD  232 (538)
T ss_pred             ccCC--------CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccc
Confidence            6543        2566889999955 87   789999999999999999999998878764331111  11111111111


Q ss_pred             ChH--HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 SVM--ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      ...  ..+...|.=.+...+  ...+...+..+..+.+++...|++.||++|||+.|.+++
T Consensus       233 ~~~eg~~La~~mnf~~P~~~--~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  233 SWPEGYNLASAMNFRFPQVK--PSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             cchhHHHHHHHhccCCCcCC--CCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence            111  122223322221111  122233334455667778889999999999999999863

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.80  E-value=1.2e-19  Score=184.31  Aligned_cols=113  Identities=26%  Similarity=0.403  Sum_probs=92.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||
T Consensus        62 ~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg  138 (312)
T cd05585          62 FQSPEKLYLVLAFINGGELFHHLQRE---GRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFG  138 (312)
T ss_pred             EecCCeEEEEEcCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECc
Confidence            34567789999999999999999753   257888887777666                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++......       ......+||+.|+| |.  ...++.++|||||||+++||+||+.||..
T Consensus       139 ~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~  195 (312)
T cd05585         139 LCKLNMKDD-------DKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYD  195 (312)
T ss_pred             ccccCccCC-------CccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCC
Confidence            998643322       12334679999977 87  66789999999999999999999999974

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.80  E-value=2.3e-19  Score=180.96  Aligned_cols=173  Identities=24%  Similarity=0.343  Sum_probs=120.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceeeC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLLD  440 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILld  440 (614)
                      ..+..++||||+++|+|.++++...             ....+++....+++.++                  |+|||++
T Consensus        74 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~  153 (297)
T cd05089          74 NRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVG  153 (297)
T ss_pred             cCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEEC
Confidence            4556899999999999999997532             11357888888877766                  9999999


Q ss_pred             CCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccccc
Q 046036          441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFAD  516 (614)
Q Consensus       441 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~  516 (614)
                      +++.+||+|||++.......        .......+..|+| |+  ...++.++|||||||+++||+| |+.||..... 
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~-  224 (297)
T cd05089         154 ENLASKIADFGLSRGEEVYV--------KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC-  224 (297)
T ss_pred             CCCeEEECCcCCCcccccee--------ccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH-
Confidence            99999999999986432211        0111223456866 77  5678899999999999999998 9999865321 


Q ss_pred             CchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          517 CLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       517 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                                      .+.... +..........         .....+.+++..|++.+|.+||+++++++.|+.+.+.
T Consensus       225 ----------------~~~~~~-~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~  278 (297)
T cd05089         225 ----------------AELYEK-LPQGYRMEKPR---------NCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEA  278 (297)
T ss_pred             ----------------HHHHHH-HhcCCCCCCCC---------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence                            111111 11111100000         1112345677899999999999999999999988876


Q ss_pred             hhc
Q 046036          597 LLG  599 (614)
Q Consensus       597 ~~~  599 (614)
                      ...
T Consensus       279 ~~~  281 (297)
T cd05089         279 RKA  281 (297)
T ss_pred             hcc
Confidence            644

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.80  E-value=1.3e-19  Score=182.26  Aligned_cols=182  Identities=16%  Similarity=0.157  Sum_probs=118.2

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||++ |+|.+++.... ...+++..+..++.++                  |+|||++.++.+|++|||+++
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR  158 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceE
Confidence            456899999997 59999987542 3358888888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh---C
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA---L  528 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~---~  528 (614)
                      ......        ......||+.|+| |.  ...++.++|||||||++|||++|+.||...... ..+.......   .
T Consensus       159 ~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~-~~~~~i~~~~~~~~  229 (290)
T cd07862         159 IYSFQM--------ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-DQLGKILDVIGLPG  229 (290)
T ss_pred             eccCCc--------ccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHH-HHHHHHHHHhCCCC
Confidence            764331        2334679999977 87  667889999999999999999999999753221 1111111111   1


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      +......+. .........+..+  ......+.-..+.++..+|++.+|++|||+.|+++
T Consensus       230 ~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         230 EEDWPRDVA-LPRQAFHSKSAQP--IEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hhhchhhhc-ccchhccCCCCCC--HHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence            111111000 0000111111110  00001111223446788999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.80  E-value=2.3e-19  Score=176.72  Aligned_cols=163  Identities=21%  Similarity=0.267  Sum_probs=118.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.++++... ...+++....+++.++                  |+||+++.++.+|++|||+
T Consensus        69 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~  147 (256)
T cd08529          69 LDKGKLNIVMEYAENGDLHKLLKMQR-GRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGV  147 (256)
T ss_pred             ccCCEEEEEEEeCCCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEccccc
Confidence            34567899999999999999998642 3468888877777766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|++.|+| |+  ...++.++|||||||+++||+||+.||.....              
T Consensus       148 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--------------  206 (256)
T cd08529         148 AKLLSDNTN-------FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ--------------  206 (256)
T ss_pred             ceeccCccc-------hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH--------------
Confidence            987654321       1234568899977 87  56678999999999999999999999974321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+.......+.....+.          .....+.+++.+|++.+|++||+|.++++
T Consensus       207 ---~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         207 ---GALILKIIRGVFPPVSQ----------MYSQQLAQLIDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             ---HHHHHHHHcCCCCCCcc----------ccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence               01111111111110000          11223456778999999999999999986

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.80  E-value=2.2e-19  Score=182.88  Aligned_cols=170  Identities=24%  Similarity=0.329  Sum_probs=120.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++|+||+++|+|.++++..  ...+++...++++.++                  |+|||+++++.+||+|||+++.
T Consensus        81 ~~~~~v~e~~~~g~l~~~l~~~--~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~  158 (316)
T cd05108          81 STVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (316)
T ss_pred             CCceeeeecCCCCCHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEcccccccc
Confidence            3567999999999999999864  2357888777777766                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      +......     .......++..|+| |+  ...++.++|||||||++||++| |+.||+.....  .+           
T Consensus       159 ~~~~~~~-----~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~--~~-----------  220 (316)
T cd05108         159 LGADEKE-----YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EI-----------  220 (316)
T ss_pred             ccCCCcc-----eeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH--HH-----------
Confidence            7543221     11122344677866 77  6678999999999999999998 99998753211  01           


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                           ...+...... +.. +       .+...+.+++..|++.+|++||+|.+++..+..+....
T Consensus       221 -----~~~~~~~~~~-~~~-~-------~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~  272 (316)
T cd05108         221 -----SSILEKGERL-PQP-P-------ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP  272 (316)
T ss_pred             -----HHHHhCCCCC-CCC-C-------CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCC
Confidence                 1111111100 000 0       11223556888999999999999999999998876543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.2e-19  Score=180.67  Aligned_cols=184  Identities=18%  Similarity=0.213  Sum_probs=128.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....|||+|||++ ||..++..  ....++..+...++.|+                  .+|||||.++..||+|||+|+
T Consensus       190 ~~siYlVFeYMdh-DL~GLl~~--p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr  266 (560)
T KOG0600|consen  190 SGSIYLVFEYMDH-DLSGLLSS--PGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLAR  266 (560)
T ss_pred             CceEEEEEecccc-hhhhhhcC--CCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEecccccee
Confidence            4578999999999 99999986  34568888888877777                  899999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ++.....      ...|..+-|.+|.| |.   ...|+.+.|+||.||||.||++|++.+.+..+ ...++...+..-..
T Consensus       267 ~y~~~~~------~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tE-veQl~kIfklcGSP  339 (560)
T KOG0600|consen  267 FYTPSGS------APYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTE-VEQLHKIFKLCGSP  339 (560)
T ss_pred             eccCCCC------cccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccH-HHHHHHHHHHhCCC
Confidence            8876643      33677889999966 87   66899999999999999999999998876322 22233332222111


Q ss_pred             ChHHHHHH--HHh--cCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYS--RLL--QGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~--~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                        .+..++  .+.  ..+.+....+..+.+.+...-...+++.-..+..||++|.|+.+++.
T Consensus       340 --~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  340 --TEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             --ChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence              111122  111  11111112223333334444445556666678889999999999885

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.80  E-value=1.7e-19  Score=177.81  Aligned_cols=165  Identities=20%  Similarity=0.277  Sum_probs=118.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.+++....  ..++|..+.+++.++                  |+||++++++.+|++|||.+
T Consensus        70 ~~~~~~lv~e~~~~~~l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~  147 (256)
T cd05113          70 KQRPIYIVTEYMSNGCLLNYLREHG--KRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLS  147 (256)
T ss_pred             cCCCcEEEEEcCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccc
Confidence            4556799999999999999997532  258999888888877                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......      .......++..|+| |+  ...++.++|||||||++|||+| |+.||.....              
T Consensus       148 ~~~~~~~~------~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~--------------  207 (256)
T cd05113         148 RYVLDDEY------TSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN--------------  207 (256)
T ss_pred             eecCCCce------eecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH--------------
Confidence            86543321      11122345677876 77  5678899999999999999999 9999864211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                         .+..+..........+..          ....+.+++.+||+.+|++||++.++++.|+
T Consensus       208 ---~~~~~~~~~~~~~~~~~~----------~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         208 ---SETVEKVSQGLRLYRPHL----------ASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             ---HHHHHHHhcCCCCCCCCC----------CCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence               111122221111111110          1234556788999999999999999998763

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.4e-20  Score=190.45  Aligned_cols=115  Identities=19%  Similarity=0.285  Sum_probs=96.4

Q ss_pred             CCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecc
Q 046036          388 MDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       388 ~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~D  449 (614)
                      .++..+++.|.||||+.+|++..+.+.+    .++..+..-+|..+                  -.|||||.+|++||+|
T Consensus       436 ~~fQT~~~l~fvmey~~Ggdm~~~~~~~----~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiAD  511 (694)
T KOG0694|consen  436 SCFQTKEHLFFVMEYVAGGDLMHHIHTD----VFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIAD  511 (694)
T ss_pred             cccccCCeEEEEEEecCCCcEEEEEecc----cccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecc
Confidence            3567889999999999999977777633    47777776676666                  7999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ||++|.-....       ..+++.||||.||| |.  ...|+..+|.|||||+||||+.|..||.+.
T Consensus       512 FGlcKe~m~~g-------~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gd  571 (694)
T KOG0694|consen  512 FGLCKEGMGQG-------DRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGD  571 (694)
T ss_pred             cccccccCCCC-------CccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCC
Confidence            99998644222       34667999999987 87  778999999999999999999999999864

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.80  E-value=9e-20  Score=170.16  Aligned_cols=188  Identities=16%  Similarity=0.114  Sum_probs=124.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+...+||+|||+. ++.+-|...  ...++.....+++.++                  |+|||++.++.+|+||||+
T Consensus        71 rrkrklhLVFE~~dh-TvL~eLe~~--p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGF  147 (396)
T KOG0593|consen   71 RRKRKLHLVFEYCDH-TVLHELERY--PNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGF  147 (396)
T ss_pred             HhcceeEEEeeecch-HHHHHHHhc--cCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchh
Confidence            456678999999999 444444332  2235555544544444                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccc-cccc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCc-hHHHHHHhh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL-SLHNFCEMA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y-~aE~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~-~l~~~~~~~  527 (614)
                      |+.+....       ...+..+.|.+| +||.   ...|...+||||.||++.||+||.+-|.+...-++ ....-.-..
T Consensus       148 AR~L~~pg-------d~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~  220 (396)
T KOG0593|consen  148 ARTLSAPG-------DNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGN  220 (396)
T ss_pred             hHhhcCCc-------chhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcc
Confidence            99887432       236778899999 5587   36889999999999999999999987765432111 112211122


Q ss_pred             CCCChHHHHHH--HHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYS--RLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      +..+-..++..  ...+..-+.|+.+-.....+.....-+++++..|+..||++|++-+|.+.
T Consensus       221 L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  221 LIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             cCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            22222333322  22333333343332333333344446678889999999999999999984

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.80  E-value=2.3e-19  Score=183.80  Aligned_cols=109  Identities=24%  Similarity=0.374  Sum_probs=88.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGl  452 (614)
                      .++..++||||+++|+|.+++....   .+++....+++.++                   |+||+++.++.+||+|||+
T Consensus        74 ~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  150 (331)
T cd06649          74 SDGEISICMEHMDGGSLDQVLKEAK---RIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGV  150 (331)
T ss_pred             ECCEEEEEeecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcc
Confidence            4567899999999999999997532   46666666655544                   9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......         .....||+.|+| |+  ...++.++|||||||++|||+||+.||..
T Consensus       151 ~~~~~~~~---------~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         151 SGQLIDSM---------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             cccccccc---------cccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            97654321         223578999977 87  56789999999999999999999999964

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.80  E-value=2.7e-19  Score=178.79  Aligned_cols=170  Identities=25%  Similarity=0.330  Sum_probs=121.1

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++|+|.++++..  ...+++..++.++.++                  |+|||+++++.+|++|||+++.
T Consensus        81 ~~~~l~~~~~~~g~l~~~l~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~  158 (279)
T cd05109          81 STVQLVTQLMPYGCLLDYVREN--KDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARL  158 (279)
T ss_pred             CCcEEEEEcCCCCCHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceee
Confidence            4567999999999999999753  2358888888888887                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      +......     .......+++.|+| |.  ...++.++|||||||++||++| |..||+.....  .+..         
T Consensus       159 ~~~~~~~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~---------  222 (279)
T cd05109         159 LDIDETE-----YHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAR--EIPD---------  222 (279)
T ss_pred             cccccce-----eecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH--HHHH---------
Confidence            7543221     11122345677877 76  6678999999999999999999 89998642211  1111         


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                             .+........ .        ......+.+++..|++.+|++||++.|++..|+.+....
T Consensus       223 -------~~~~~~~~~~-~--------~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         223 -------LLEKGERLPQ-P--------PICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             -------HHHCCCcCCC-C--------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcCC
Confidence                   1111110000 0        011224556788999999999999999999988776544

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.80  E-value=2.2e-19  Score=179.44  Aligned_cols=168  Identities=24%  Similarity=0.408  Sum_probs=119.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-----------CCcccCHHHHHHHHhhC------------------CCceeeCCC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-----------ATRRLDLAEGLKIAVDI------------------PSNVLLDYD  442 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-----------~~~~l~~~~~~~ia~~i------------------~~NILld~~  442 (614)
                      ..+..++||||+++|+|.++++..+           ....++|.....++.++                  |+||+++.+
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~  158 (280)
T cd05049          79 EGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYD  158 (280)
T ss_pred             cCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCC
Confidence            4467899999999999999997532           12357888888777766                  999999999


Q ss_pred             CCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCc
Q 046036          443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCL  518 (614)
Q Consensus       443 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~  518 (614)
                      +.+|++|||+++........     .......+++.|+| |+  ...++.++|||||||+++||++ |+.||......  
T Consensus       159 ~~~kl~d~g~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~--  231 (280)
T cd05049         159 LVVKIGDFGMSRDVYTTDYY-----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNE--  231 (280)
T ss_pred             CeEEECCcccceecccCcce-----ecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHH--
Confidence            99999999999865433211     11223446788966 87  6778999999999999999999 99998643211  


Q ss_pred             hHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          519 SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       519 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                                     +.++....+.....+.          .....+.++...|++.+|++||++.||++.|+
T Consensus       232 ---------------~~~~~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         232 ---------------EVIECITQGRLLQRPR----------TCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             ---------------HHHHHHHcCCcCCCCC----------CCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence                           1111111111111111          11223456788999999999999999999885

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.79  E-value=2.6e-19  Score=176.64  Aligned_cols=165  Identities=19%  Similarity=0.286  Sum_probs=117.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++...   ..+++..+.+++.++                  |+||+++.++.+||+|||+++
T Consensus        67 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~  143 (257)
T cd05116          67 AESWMLVMELAELGPLNKFLQKN---KHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSK  143 (257)
T ss_pred             CCCcEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCcccc
Confidence            34568999999999999999743   357888888887777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .+......    ........+++.|+| |.  ...++.++|||||||+++|++| |+.||......  ....        
T Consensus       144 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~--------  209 (257)
T cd05116         144 ALGADENY----YKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN--EVTQ--------  209 (257)
T ss_pred             ccCCCCCe----eeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHH--------
Confidence            76543221    011122344577866 76  5678889999999999999998 99999753211  1111        


Q ss_pred             ChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          531 SVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                          .    +..... ..|.          .....+.++...|++.+|++||+|.+|++.|+.
T Consensus       210 ----~----i~~~~~~~~~~----------~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         210 ----M----IESGERMECPQ----------RCPPEMYDLMKLCWTYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             ----H----HHCCCCCCCCC----------CCCHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence                1    111110 0111          111234467789999999999999999999975

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.79  E-value=2.7e-19  Score=177.83  Aligned_cols=167  Identities=25%  Similarity=0.367  Sum_probs=116.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceeeC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLLD  440 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILld  440 (614)
                      ..+..++||||+++|+|.++++...             ....++|.++..++.++                  |+||+++
T Consensus        67 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~  146 (270)
T cd05047          67 HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVG  146 (270)
T ss_pred             cCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEc
Confidence            4556799999999999999997532             12347888888877766                  9999999


Q ss_pred             CCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccccc
Q 046036          441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFAD  516 (614)
Q Consensus       441 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~  516 (614)
                      +++.+|++|||+++......        .......++.|+| |+  ...++.++|||||||+++||+| |+.||......
T Consensus       147 ~~~~~kl~dfgl~~~~~~~~--------~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~  218 (270)
T cd05047         147 ENYVAKIADFGLSRGQEVYV--------KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA  218 (270)
T ss_pred             CCCeEEECCCCCccccchhh--------hccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHH
Confidence            99999999999986332111        1111234567876 87  5678899999999999999997 99998642211


Q ss_pred             CchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          517 CLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       517 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                                       +.... +.........         ......+.+++..|++.+|.+|||+.|+++.|+++
T Consensus       219 -----------------~~~~~-~~~~~~~~~~---------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         219 -----------------ELYEK-LPQGYRLEKP---------LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             -----------------HHHHH-HhCCCCCCCC---------CcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence                             11111 1111100000         01122455788899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.79  E-value=4.8e-19  Score=180.21  Aligned_cols=175  Identities=21%  Similarity=0.314  Sum_probs=122.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ..++..++||||+++|+|.+++....             ....++|.+..+++.++                  |+||++
T Consensus        88 ~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill  167 (314)
T cd05099          88 TQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLV  167 (314)
T ss_pred             ccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEE
Confidence            34567899999999999999996532             12358888888877777                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      ++++.+|++|||+++........     .......+++.|+| |.  ...++.++|||||||++||+++ |+.||.....
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~  242 (314)
T cd05099         168 TEDNVMKIADFGLARGVHDIDYY-----KKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV  242 (314)
T ss_pred             cCCCcEEEccccccccccccccc-----cccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCH
Confidence            99999999999999866532211     11112234567877 76  6678899999999999999999 8888864321


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      .                 + +...+.........         ..+...+.+++.+|++.+|++||++.|+++.|+++..
T Consensus       243 ~-----------------~-~~~~~~~~~~~~~~---------~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~  295 (314)
T cd05099         243 E-----------------E-LFKLLREGHRMDKP---------SNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLA  295 (314)
T ss_pred             H-----------------H-HHHHHHcCCCCCCC---------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence            1                 1 11111111110000         0112234467789999999999999999999998876


Q ss_pred             Hh
Q 046036          596 VL  597 (614)
Q Consensus       596 ~~  597 (614)
                      ..
T Consensus       296 ~~  297 (314)
T cd05099         296 AV  297 (314)
T ss_pred             Hh
Confidence            54

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.79  E-value=3.7e-19  Score=175.80  Aligned_cols=165  Identities=25%  Similarity=0.379  Sum_probs=118.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.++++... ...++|..+..++.++                  |+||++++++.+|++|||+++
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~  150 (260)
T cd05069          72 EEPIYIVTEFMGKGSLLDFLKEGD-GKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLAR  150 (260)
T ss_pred             CCCcEEEEEcCCCCCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccce
Confidence            345789999999999999997642 3458898888887777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......      .......++..|+| |+  ...++.++|||||||+++|++| |+.||......              
T Consensus       151 ~~~~~~~------~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--------------  210 (260)
T cd05069         151 LIEDNEY------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNR--------------  210 (260)
T ss_pred             EccCCcc------cccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHH--------------
Confidence            7643321      11122346678976 87  5778999999999999999999 89998753211              


Q ss_pred             ChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          531 SVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                         +... .+..... ..+.          .....+.+++.+|++.+|++||++++|.+.|++
T Consensus       211 ---~~~~-~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         211 ---EVLE-QVERGYRMPCPQ----------GCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             ---HHHH-HHHcCCCCCCCc----------ccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence               1111 1111110 0110          112234456679999999999999999999874

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.79  E-value=3.9e-19  Score=176.31  Aligned_cols=172  Identities=19%  Similarity=0.229  Sum_probs=122.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+..++||||+++|+|.+++.... ....+++.++..++.++                  |+||+++.++.++++|||+
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~  152 (267)
T cd08224          73 ENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGL  152 (267)
T ss_pred             cCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccce
Confidence            4567899999999999999986422 23457888888877766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|++.|+| |+  ...++.++|||||||++||+++|+.||....   ...         
T Consensus       153 ~~~~~~~~~-------~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~---------  213 (267)
T cd08224         153 GRFFSSKTT-------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK---MNL---------  213 (267)
T ss_pred             eeeccCCCc-------ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCC---ccH---------
Confidence            986644321       1233568888966 86  5678899999999999999999999986421   111         


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                         .+..+........+.+.         ......+.+++..|+..+|++||++.+|+++|++++
T Consensus       214 ---~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         214 ---YSLCKKIEKCDYPPLPA---------DHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             ---HHHHhhhhcCCCCCCCh---------hhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence               11111111111111110         011223446777999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.79  E-value=2.9e-19  Score=176.27  Aligned_cols=168  Identities=21%  Similarity=0.298  Sum_probs=119.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++....   .++|..+..++.++                  |+||+++.++.+|++|||+++
T Consensus        67 ~~~~~~v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~  143 (257)
T cd05060          67 GEPLMLVMELAPLGPLLKYLKKRR---EIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSR  143 (257)
T ss_pred             CCceEEEEEeCCCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccc
Confidence            345789999999999999998542   58888888888877                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........    ........++..|+| |.  ...++.++|||||||++||+++ |+.||.....  .....+....   
T Consensus       144 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~--~~~~~~~~~~---  214 (257)
T cd05060         144 ALGAGSDY----YRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG--AEVIAMLESG---  214 (257)
T ss_pred             eeecCCcc----cccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHHcC---
Confidence            76543221    011112234567866 76  5678899999999999999998 9999875321  1111111100   


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                                  .....+.          .....+.+++.+|+..+|++||++.++++.|+.+.
T Consensus       215 ------------~~~~~~~----------~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         215 ------------ERLPRPE----------ECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             ------------CcCCCCC----------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence                        0000010          11234557888999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.79  E-value=2.3e-19  Score=177.53  Aligned_cols=166  Identities=26%  Similarity=0.346  Sum_probs=119.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++.... ...++|..+..++.++                  |+||++++++.+|++|||.++
T Consensus        72 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~  150 (262)
T cd05071          72 EEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLAR  150 (262)
T ss_pred             CCCcEEEEEcCCCCcHHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCcee
Confidence            345789999999999999997542 3457888888887777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .+.....      .......++..|+| |+  ...++.++|||||||+++|++| |+.||......              
T Consensus       151 ~~~~~~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~--------------  210 (262)
T cd05071         151 LIEDNEY------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--------------  210 (262)
T ss_pred             ecccccc------ccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChH--------------
Confidence            7654321      11123446678966 87  5678999999999999999999 88888643211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                         +..+.... .... + ..       .+....+.+++..|++.+|++||++.++.+.|+.
T Consensus       211 ---~~~~~~~~-~~~~-~-~~-------~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~  259 (262)
T cd05071         211 ---EVLDQVER-GYRM-P-CP-------PECPESLHDLMCQCWRKEPEERPTFEYLQAFLED  259 (262)
T ss_pred             ---HHHHHHhc-CCCC-C-Cc-------cccCHHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence               11111111 1000 0 00       1223345678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.79  E-value=4e-19  Score=178.09  Aligned_cols=183  Identities=20%  Similarity=0.297  Sum_probs=121.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++||||+++|+|.+++...  ...++|..+..++.++                  |+||+++.++.+|++|||+++
T Consensus        80 ~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~  157 (284)
T cd05079          80 GNGIKLIMEFLPSGSLKEYLPRN--KNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK  157 (284)
T ss_pred             CCceEEEEEccCCCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCcccc
Confidence            35678999999999999999653  2358999888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .+......    ........|+..|+| |+  ...++.++|||||||+++|++|++.|........   .........+.
T Consensus       158 ~~~~~~~~----~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~---~~~~~~~~~~~  230 (284)
T cd05079         158 AIETDKEY----YTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLF---LKMIGPTHGQM  230 (284)
T ss_pred             ccccCccc----eeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchh---hhhcccccccc
Confidence            76543221    011223456667866 87  5678899999999999999999887754311100   00000000000


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                      ........+.........         ......+.+++..|++.+|++||++.++++.++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         231 TVTRLVRVLEEGKRLPRP---------PNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             cHHHHHHHHHcCccCCCC---------CCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            111111122211111000         11233566788899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.79  E-value=2.8e-19  Score=176.23  Aligned_cols=164  Identities=23%  Similarity=0.355  Sum_probs=116.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.++++...  ..++|..+..++.++                  |+||++++++.+|++|||+
T Consensus        69 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~  146 (256)
T cd05059          69 TKQRPIFIVTEYMANGCLLNYLRERK--GKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGL  146 (256)
T ss_pred             cCCCceEEEEecCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCccc
Confidence            34567899999999999999997542  258888888887776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......++..|+| |+  ...++.++|||||||++||++| |+.||+.....            
T Consensus       147 ~~~~~~~~~------~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~------------  208 (256)
T cd05059         147 ARYVLDDQY------TSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNS------------  208 (256)
T ss_pred             ceecccccc------cccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHH------------
Confidence            986543221      11112234457866 76  5678899999999999999999 78888642111            


Q ss_pred             CCChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          529 PESVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                           +... .+..... ..+.          .....+.+++.+|++.+|++||||.|+++.|
T Consensus       209 -----~~~~-~~~~~~~~~~~~----------~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         209 -----EVVE-SVSAGYRLYRPK----------LAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             -----HHHH-HHHcCCcCCCCC----------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence                 1111 1111110 0010          1123456788899999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.79  E-value=3.9e-19  Score=179.74  Aligned_cols=171  Identities=21%  Similarity=0.243  Sum_probs=120.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.++++... ...++|.+...++.++                  |+||+++.+..+|++|||+
T Consensus       109 ~~~~~~~lv~e~~~~~~L~~~i~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~  187 (302)
T cd05055         109 TIGGPILVITEYCCYGDLLNFLRRKR-ESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGL  187 (302)
T ss_pred             ecCCceEEEEEcCCCCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcc
Confidence            34567899999999999999997543 2348898888887766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++........     .......+++.|+| |.  ...++.++|||||||+++|++| |+.||......            
T Consensus       188 ~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~------------  250 (302)
T cd05055         188 ARDIMNDSNY-----VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVD------------  250 (302)
T ss_pred             cccccCCCce-----eecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCch------------
Confidence            9865433210     11122345678977 86  6678899999999999999998 99998653211            


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                           +.+...+..........  .       ....+.+++..|++.+|++||++.||++.|++.
T Consensus       251 -----~~~~~~~~~~~~~~~~~--~-------~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         251 -----SKFYKLIKEGYRMAQPE--H-------APAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             -----HHHHHHHHcCCcCCCCC--C-------CCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence                 00111111111110000  0       112345677899999999999999999999763

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.79  E-value=3.6e-19  Score=174.77  Aligned_cols=166  Identities=22%  Similarity=0.316  Sum_probs=117.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++....  ..++|..+.+++.++                  |+||+++.++.+|++|||+
T Consensus        62 ~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~  139 (250)
T cd05085          62 TQRQPIYIVMELVPGGDFLSFLRKKK--DELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGM  139 (250)
T ss_pred             ecCCccEEEEECCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCcc
Confidence            34556899999999999999987542  357888888887776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......+++.|+| |+  ...++.++|||||||+++|+++ |..||......  ..        
T Consensus       140 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~--~~--------  203 (250)
T cd05085         140 SRQEDDGIY------SSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQ--QA--------  203 (250)
T ss_pred             ceecccccc------ccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHH--HH--------
Confidence            976543221      11122344677866 87  6678899999999999999999 99998643111  00        


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                              ...+.........         ......+.+++..|++.+|++||++.|++++|.
T Consensus       204 --------~~~~~~~~~~~~~---------~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         204 --------REQVEKGYRMSCP---------QKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             --------HHHHHcCCCCCCC---------CCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence                    0111111110000         011234567888999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.79  E-value=3.9e-19  Score=177.72  Aligned_cols=172  Identities=19%  Similarity=0.268  Sum_probs=123.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCC-----CcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEA-----TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~-----~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~D  449 (614)
                      ++..++++||+++|+|.+++.....     ...++|..+..++.++                  |+||++++++.+|++|
T Consensus        81 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          81 GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECC
Confidence            4678999999999999999865432     1568999998888877                  9999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHH
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~  525 (614)
                      ||+++.+......     .......++..|+| |+  ...++.++|||||||++||+++ |+.||.....  ..+..+..
T Consensus       161 ~g~~~~~~~~~~~-----~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~  233 (280)
T cd05043         161 NALSRDLFPMDYH-----CLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP--FEMAAYLK  233 (280)
T ss_pred             CCCcccccCCceE-----EeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH--HHHHHHHH
Confidence            9999876543221     11122345677877 77  5678899999999999999999 9999975321  11111111


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                                      ......  ..       ..+...+.+++..|++.+|++|||+.||+..|+.+..+
T Consensus       234 ----------------~~~~~~--~~-------~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~~  279 (280)
T cd05043         234 ----------------DGYRLA--QP-------INCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHAQ  279 (280)
T ss_pred             ----------------cCCCCC--CC-------CcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhc
Confidence                            111000  00       01122345688899999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.79  E-value=3e-19  Score=178.25  Aligned_cols=168  Identities=20%  Similarity=0.285  Sum_probs=119.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC-------CcccCHHHHHHHHhhC------------------CCceeeCCCCCee
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA-------TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAY  446 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~-------~~~l~~~~~~~ia~~i------------------~~NILld~~~~~k  446 (614)
                      ..+..++||||+++|+|.+++.....       ...++|..+..++.++                  |+||++++++.+|
T Consensus        80 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~k  159 (277)
T cd05032          80 TGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVK  159 (277)
T ss_pred             CCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEE
Confidence            34678999999999999999975321       2247888888887776                  9999999999999


Q ss_pred             ecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHH
Q 046036          447 VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHN  522 (614)
Q Consensus       447 l~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~  522 (614)
                      ++|||+++........     .......++..|+| |.  ...++.++|||||||+++|++| |+.||......      
T Consensus       160 l~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~------  228 (277)
T cd05032         160 IGDFGMTRDIYETDYY-----RKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNE------  228 (277)
T ss_pred             ECCcccchhhccCccc-----ccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHH------
Confidence            9999999866543211     12233457788976 86  5678999999999999999998 89898642211      


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                                 +.............|..          ....+.+++..|++.+|++|||+.|++..|+
T Consensus       229 -----------~~~~~~~~~~~~~~~~~----------~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         229 -----------EVLKFVIDGGHLDLPEN----------CPDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             -----------HHHHHHhcCCCCCCCCC----------CCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence                       11111111111011111          1234557888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.79  E-value=3.8e-19  Score=176.47  Aligned_cols=172  Identities=19%  Similarity=0.207  Sum_probs=121.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      ..++..++||||+++|+|.+++.... ....++|.....++.++                  |+||+++.++.++++|||
T Consensus        72 ~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg  151 (267)
T cd08229          72 IEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             EeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcch
Confidence            34567899999999999999986421 23458888888777766                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++.......       ......|+..|+| |+  ...++.++||||||+++|||++|..||.....+..          
T Consensus       152 ~~~~~~~~~~-------~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~----------  214 (267)
T cd08229         152 LGRFFSSKTT-------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY----------  214 (267)
T ss_pred             hhhccccCCc-------ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHH----------
Confidence            9987654321       1223568889977 77  56788899999999999999999999864221100          


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                           +...........+.+..         .....+.+++..|++.+|++||||.+|++.++++
T Consensus       215 -----~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         215 -----SLCKKIEQCDYPPLPSD---------HYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             -----HHhhhhhcCCCCCCCcc---------cccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence                 11111111111100100         1122344666799999999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.79  E-value=4.2e-19  Score=164.32  Aligned_cols=157  Identities=18%  Similarity=0.153  Sum_probs=110.5

Q ss_pred             CchhhhccCCCCCcccCHHHHHHHHhhC------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccc
Q 046036          406 GSLESWLHPNEATRRLDLAEGLKIAVDI------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV  473 (614)
Q Consensus       406 GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~  473 (614)
                      |||.++++..  ...++|..+..|+.++            |+|||++.++.+|+  ||+++......            .
T Consensus         1 GsL~~~l~~~--~~~l~~~~~~~i~~qi~~~L~~lH~~~kp~Nil~~~~~~~~~--fG~~~~~~~~~------------~   64 (176)
T smart00750        1 VSLADILEVR--GRPLNEEEIWAVCLQCLRALRELHRQAKSGNILLTWDGLLKL--DGSVAFKTPEQ------------S   64 (176)
T ss_pred             CcHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHhcCCcccEeEcCccceee--ccceEeecccc------------C
Confidence            7999999753  3359999999998888            89999999999999  99998764321            2


Q ss_pred             cccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCC
Q 046036          474 WGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAED  550 (614)
Q Consensus       474 ~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  550 (614)
                      .||+.|+| |+  ...++.++|||||||++|||+||+.||.........+..+.                .......+..
T Consensus        65 ~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~----------------~~~~~~~~~~  128 (176)
T smart00750       65 RVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILL----------------NGMPADDPRD  128 (176)
T ss_pred             CCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHH----------------HHhccCCccc
Confidence            58899977 87  67789999999999999999999999865322111111111                1111111111


Q ss_pred             chhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          551 EPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       551 ~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                      ++... ...+ ...+.+++..|++.+|++||++.|+++.+..+...
T Consensus       129 ~~~~~-~~~~-~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~  172 (176)
T smart00750      129 RSNLE-SVSA-ARSFADFMRVCASRLPQRREAANHYLAHCRALFAE  172 (176)
T ss_pred             cccHH-HHHh-hhhHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence            11110 1111 12466788899999999999999999988776543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.79  E-value=2.6e-19  Score=182.83  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=91.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        65 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~  141 (323)
T cd05571          65 QTHDRLCFVMEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGL  141 (323)
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCC
Confidence            4466789999999999999999753   357887777776666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |.  ...++.++||||+||+++||+||+.||..
T Consensus       142 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~  197 (323)
T cd05571         142 CKEGISDG-------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  197 (323)
T ss_pred             CcccccCC-------CcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCC
Confidence            97543221       12334679999977 87  56789999999999999999999999964

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.79  E-value=5.3e-19  Score=178.86  Aligned_cols=172  Identities=25%  Similarity=0.356  Sum_probs=119.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ..++..++||||+++|+|.++++...             ....+++.++..++.++                  |+|||+
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili  157 (303)
T cd05088          78 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILV  157 (303)
T ss_pred             CCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEe
Confidence            34567899999999999999997532             12357888888887776                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      ++++.+||+|||+++......        ......++..|+| |+  ...++.++|||||||+++|++| |..||.....
T Consensus       158 ~~~~~~kl~dfg~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  229 (303)
T cd05088         158 GENYVAKIADFGLSRGQEVYV--------KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC  229 (303)
T ss_pred             cCCCcEEeCccccCcccchhh--------hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh
Confidence            999999999999986432111        1112234567866 77  5567899999999999999998 9999864221


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      .                 +... .+.......  ...       .....+.+++.+|++.+|++||++.+++.+|+++..
T Consensus       230 ~-----------------~~~~-~~~~~~~~~--~~~-------~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~  282 (303)
T cd05088         230 A-----------------ELYE-KLPQGYRLE--KPL-------NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE  282 (303)
T ss_pred             H-----------------HHHH-HHhcCCcCC--CCC-------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            1                 1111 111111000  000       011234567889999999999999999999987755


Q ss_pred             Hh
Q 046036          596 VL  597 (614)
Q Consensus       596 ~~  597 (614)
                      ..
T Consensus       283 ~~  284 (303)
T cd05088         283 ER  284 (303)
T ss_pred             hh
Confidence            44

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.79  E-value=1.6e-19  Score=181.58  Aligned_cols=162  Identities=22%  Similarity=0.228  Sum_probs=119.9

Q ss_pred             CCc-eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDF-KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~-~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ++. .++||+||+||++.+.+...+ +..++..+..++..++                  ++||+++.+..+|++|||+|
T Consensus        75 ~~~~l~Ivm~Y~eGg~l~~~i~~~k-~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGla  153 (426)
T KOG0589|consen   75 DGQLLCIVMEYCEGGDLAQLIKEQK-GVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLA  153 (426)
T ss_pred             CCceEEEEEeecCCCCHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhh
Confidence            444 899999999999999998654 3445555444444444                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      |.+.....       ....++||+.||. |.  ...|..|+|+||+||+++||++-+++|....                
T Consensus       154 K~l~~~~~-------~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~----------------  210 (426)
T KOG0589|consen  154 KILNPEDS-------LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN----------------  210 (426)
T ss_pred             hhcCCchh-------hhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc----------------
Confidence            99987642       2556899999976 87  7899999999999999999999999997521                


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                       ....+...+.....+-|..       ...++.   .+...|++.+|+.||++.+++.+
T Consensus       211 -m~~Li~ki~~~~~~Plp~~-------ys~el~---~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  211 -MSELILKINRGLYSPLPSM-------YSSELR---SLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             -hHHHHHHHhhccCCCCCcc-------ccHHHH---HHHHHHhhcCCccCCCHHHHhhC
Confidence             2233333333332222221       112222   34457899999999999999986

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.79  E-value=5.7e-19  Score=174.51  Aligned_cols=165  Identities=25%  Similarity=0.387  Sum_probs=118.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.++++... ...++|.++..++.++                  |+||++++++.+|++|||+++
T Consensus        72 ~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~  150 (260)
T cd05070          72 EEPIYIVTEYMSKGSLLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLAR  150 (260)
T ss_pred             CCCcEEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeee
Confidence            345789999999999999997542 3458898888887777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .+.....      .......++..|+| |+  ...++.++|||||||+++|+++ |+.||......              
T Consensus       151 ~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~--------------  210 (260)
T cd05070         151 LIEDNEY------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR--------------  210 (260)
T ss_pred             eccCccc------ccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHH--------------
Confidence            7654321      11122345667976 87  5678899999999999999999 88898653211              


Q ss_pred             ChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          531 SVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                         +..+. +..... +.+.          .....+.++..+|+..+|++||||+++.+.|++
T Consensus       211 ---~~~~~-~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         211 ---EVLEQ-VERGYRMPCPQ----------DCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             ---HHHHH-HHcCCCCCCCC----------cCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence               11111 111110 0010          112245578889999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.79  E-value=4.7e-19  Score=176.29  Aligned_cols=167  Identities=23%  Similarity=0.318  Sum_probs=116.3

Q ss_pred             ceeEEecccCCCchhhhccCCC---CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNE---ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~---~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..++|||||++|+|.+++....   ....++|.....++.++                  |+|||+++++.+|++|||++
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  159 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLS  159 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcc
Confidence            4689999999999999874321   23458888888877766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........     .......+++.|++ |+  ...++.++|||||||++||+++ |+.||......             
T Consensus       160 ~~~~~~~~~-----~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-------------  221 (272)
T cd05075         160 KKIYNGDYY-----RQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENS-------------  221 (272)
T ss_pred             cccCcccce-----ecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHH-------------
Confidence            876543211     11122345677866 76  5678899999999999999999 78888642110             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                          +..+ .+......  ...+       .....+.+++..|++.+|++||||.|+++.|+++
T Consensus       222 ----~~~~-~~~~~~~~--~~~~-------~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         222 ----EIYD-YLRQGNRL--KQPP-------DCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             ----HHHH-HHHcCCCC--CCCC-------CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                1111 11111100  0000       1122345778899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.79  E-value=4.4e-19  Score=185.24  Aligned_cols=143  Identities=21%  Similarity=0.247  Sum_probs=97.6

Q ss_pred             ccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc
Q 046036          420 RLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM  481 (614)
Q Consensus       420 ~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a  481 (614)
                      .++|....+|+.++                  |+|||+++++.+|++|||+++........     .......|++.|+|
T Consensus       235 ~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~-----~~~~~~~~~~~y~a  309 (401)
T cd05107         235 ALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNY-----ISKGSTFLPLKWMA  309 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeCCCEEEEEecCcceeccccccc-----ccCCCcCCCCceeC
Confidence            36777777777665                  99999999999999999999865432211     11223457788977


Q ss_pred             -cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHH
Q 046036          482 -EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAK  557 (614)
Q Consensus       482 -E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  557 (614)
                       |.  ...++.++|||||||+++||++ |+.||......                 +.....+..........       
T Consensus       310 PE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~-----------------~~~~~~~~~~~~~~~p~-------  365 (401)
T cd05107         310 PESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMN-----------------EQFYNAIKRGYRMAKPA-------  365 (401)
T ss_pred             hHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCch-----------------HHHHHHHHcCCCCCCCC-------
Confidence             76  5668899999999999999998 88898643211                 11111111111110000       


Q ss_pred             HHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          558 IRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       558 ~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                        .....+.+++..||+.+|++||+|+|++..|+++
T Consensus       366 --~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         366 --HASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             --CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence              0112345677799999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.79  E-value=6.3e-19  Score=173.83  Aligned_cols=166  Identities=21%  Similarity=0.299  Sum_probs=119.6

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++|+|.+++..... ..++|.....++.++                  |+||+++.++.+|++|||+++.
T Consensus        68 ~~~~~v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~  146 (257)
T cd05040          68 HPLMMVTELAPLGSLLDRLRKDAL-GHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRA  146 (257)
T ss_pred             CeEEEEEEecCCCcHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEecccccccc
Confidence            567999999999999999976432 468898888877776                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      +......    ........++.+|+| |+  ...++.++|||||||+++||+| |+.||......               
T Consensus       147 ~~~~~~~----~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~---------------  207 (257)
T cd05040         147 LPQNEDH----YVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGS---------------  207 (257)
T ss_pred             ccccccc----eecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHH---------------
Confidence            7543221    111223567888977 87  5678999999999999999999 99998643211               


Q ss_pred             hHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          532 VMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       532 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                        +........... ..+.          .....+.+++..|++.+|++||++.||++.|.
T Consensus       208 --~~~~~~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         208 --QILKKIDKEGERLERPE----------ACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             --HHHHHHHhcCCcCCCCc----------cCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence              111111100000 0000          11234556788999999999999999998874

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.79  E-value=3.5e-19  Score=178.12  Aligned_cols=168  Identities=21%  Similarity=0.325  Sum_probs=118.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC------------CcccCHHHHHHHHhhC------------------CCceeeCC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA------------TRRLDLAEGLKIAVDI------------------PSNVLLDY  441 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~------------~~~l~~~~~~~ia~~i------------------~~NILld~  441 (614)
                      .++..++||||+++|+|.++++....            ...++|.++..++.++                  |+||++++
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~  157 (280)
T cd05092          78 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQ  157 (280)
T ss_pred             cCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcC
Confidence            35667999999999999999975421            1358888888887776                  99999999


Q ss_pred             CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccC
Q 046036          442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADC  517 (614)
Q Consensus       442 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~  517 (614)
                      ++.+|++|||+++........     .......+++.|+| |+  ...++.++|||||||+++||++ |+.||...... 
T Consensus       158 ~~~~kL~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-  231 (280)
T cd05092         158 GLVVKIGDFGMSRDIYSTDYY-----RVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNT-  231 (280)
T ss_pred             CCCEEECCCCceeEcCCCcee-----ecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHH-
Confidence            999999999999865433211     11122345678966 86  6678999999999999999999 89998642211 


Q ss_pred             chHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          518 LSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                                      +.++..........+.          .....+.++...|++.+|++||++.||.+.|+
T Consensus       232 ----------------~~~~~~~~~~~~~~~~----------~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         232 ----------------EAIECITQGRELERPR----------TCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             ----------------HHHHHHHcCccCCCCC----------CCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence                            1111111111000010          11123446778999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.79  E-value=3.7e-19  Score=176.57  Aligned_cols=172  Identities=19%  Similarity=0.228  Sum_probs=119.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+..++||||+++|+|.+++.... ....+++.....++.++                  |+||+++.++.++++|||+
T Consensus        73 ~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~  152 (267)
T cd08228          73 EDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL  152 (267)
T ss_pred             ECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECcccc
Confidence            3567899999999999999885322 22346777777776665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|++.|+| |+  ...++.++|||||||++|||++|+.||.......            
T Consensus       153 ~~~~~~~~~-------~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~------------  213 (267)
T cd08228         153 GRFFSSKTT-------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL------------  213 (267)
T ss_pred             ceeccchhH-------HHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccH------------
Confidence            987654321       1223568888966 87  5678889999999999999999999986422111            


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                         .+.. ..+..... .+..    .   ......+.+++.+||+.+|++||++.||++.+++++
T Consensus       214 ---~~~~-~~~~~~~~-~~~~----~---~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         214 ---FSLC-QKIEQCDY-PPLP----T---EHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             ---HHHH-HHHhcCCC-CCCC----h---hhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence               1111 11111110 0000    0   111233456677999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.79  E-value=3.1e-19  Score=178.74  Aligned_cols=184  Identities=19%  Similarity=0.323  Sum_probs=124.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++||||+++|+|.+++....  ..++|..+..++.++                  |+||+++.++.+|++|||++.
T Consensus        80 ~~~~~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  157 (284)
T cd05038          80 GRSLRLIMEYLPSGSLRDYLQRHR--DQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAK  157 (284)
T ss_pred             CCceEEEEecCCCCCHHHHHHhCc--cccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEccccccc
Confidence            456899999999999999997642  258999888888876                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCccccccccccc-ccc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYN-MEW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~-aE~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ........    ........++..|+ ||+  ...++.++||||||++++||+||+.|+.........   +........
T Consensus       158 ~~~~~~~~----~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~---~~~~~~~~~  230 (284)
T cd05038         158 VLPEDKDY----YYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLR---MIGIAQGQM  230 (284)
T ss_pred             ccccCCcc----eeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcc---ccccccccc
Confidence            77533211    01111223444564 476  567889999999999999999999998653221111   111111111


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                      ....+...+.........         ..+...+.+++.+|++.+|++||+|.||+++|+.++
T Consensus       231 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         231 IVTRLLELLKEGERLPRP---------PSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             cHHHHHHHHHcCCcCCCC---------ccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhcC
Confidence            222222333222111100         112245667888999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.78  E-value=3.6e-19  Score=181.80  Aligned_cols=112  Identities=21%  Similarity=0.317  Sum_probs=92.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++..+..++.++                  |+|||+++++.+||+|||+
T Consensus        71 ~~~~~~~lv~E~~~~g~L~~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~  147 (323)
T cd05616          71 QTMDRLYFVMEYVNGGDLMYQIQQV---GRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGM  147 (323)
T ss_pred             ecCCEEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCC
Confidence            4456789999999999999998753   247888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||++|||+||+.||..
T Consensus       148 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~  203 (323)
T cd05616         148 CKENMWDG-------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG  203 (323)
T ss_pred             ceecCCCC-------CccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCC
Confidence            97543221       12334679999977 87  66789999999999999999999999975

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.78  E-value=5.5e-19  Score=176.98  Aligned_cols=170  Identities=19%  Similarity=0.294  Sum_probs=117.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC--------------CCcccCHHHHHHHHhhC------------------CCcee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE--------------ATRRLDLAEGLKIAVDI------------------PSNVL  438 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~--------------~~~~l~~~~~~~ia~~i------------------~~NIL  438 (614)
                      ..++..++||||+++|+|.+++....              ....++|.....++.++                  |+||+
T Consensus        77 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nil  156 (283)
T cd05090          77 TQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNIL  156 (283)
T ss_pred             ecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEE
Confidence            34567899999999999999985321              12347888887777776                  99999


Q ss_pred             eCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccc
Q 046036          439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMF  514 (614)
Q Consensus       439 ld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~  514 (614)
                      +++++.+|++|||+++........     .......++..|+| |+  ...++.++|||||||+++||++ |..||....
T Consensus       157 i~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~  231 (283)
T cd05090         157 IGEQLHVKISDLGLSREIYSADYY-----RVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS  231 (283)
T ss_pred             EcCCCcEEeccccccccccCCcce-----ecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999876433211     11233446778976 87  5678999999999999999999 988986421


Q ss_pred             ccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                      .  ..+..            .+.   .......+.          .....+.++...|++.+|++||++.+|.++|..
T Consensus       232 ~--~~~~~------------~~~---~~~~~~~~~----------~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         232 N--QEVIE------------MVR---KRQLLPCSE----------DCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             H--HHHHH------------HHH---cCCcCCCCC----------CCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            1  01111            111   010000010          011234456679999999999999999988863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.78  E-value=1.1e-18  Score=172.59  Aligned_cols=170  Identities=20%  Similarity=0.299  Sum_probs=115.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++....  ..+.+..+..++.++                  |+|||+++++.+|++|||+++
T Consensus        69 ~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~  146 (262)
T cd05058          69 EGSPLVVLPYMKHGDLRNFIRSET--HNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLAR  146 (262)
T ss_pred             CCCcEEEEecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccc
Confidence            445789999999999999997542  245666666665555                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhC-CCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTG-KRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG-~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .........   ........+++.|+| |+  ...++.++|||||||+++||++| ..||.....               
T Consensus       147 ~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~---------------  208 (262)
T cd05058         147 DIYDKEYYS---VHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDS---------------  208 (262)
T ss_pred             cccCCccee---ecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCH---------------
Confidence            654322100   011123456778866 76  56788999999999999999996 445543211               


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                        .+.............+.          .....+.+++..|++.+|++||++.||++.|+++.
T Consensus       209 --~~~~~~~~~~~~~~~~~----------~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         209 --FDITVYLLQGRRLLQPE----------YCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             --HHHHHHHhcCCCCCCCC----------cCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence              11111111111100010          11224557888999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.78  E-value=6e-19  Score=180.29  Aligned_cols=159  Identities=21%  Similarity=0.266  Sum_probs=113.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC-CCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD-MTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~-~~~kl~DfGl  452 (614)
                      .....++||||+.+|+|++++...+   ++......++..|+                  |+|||+|.+ +.+||+|||+
T Consensus        91 t~~~~~ivmEy~~gGdL~~~i~~~g---~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~  167 (370)
T KOG0583|consen   91 TPTKIYIVMEYCSGGDLFDYIVNKG---RLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGL  167 (370)
T ss_pred             cCCeEEEEEEecCCccHHHHHHHcC---CCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEecccc
Confidence            3455899999999999999998633   46666666666666                  999999999 9999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCC-C-CccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-Y-QHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~-~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +.......       ......+||+.|+| |+  ... | ..++||||+||+||.|++|+.||++...            
T Consensus       168 s~~~~~~~-------~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~------------  228 (370)
T KOG0583|consen  168 SAISPGED-------GLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNV------------  228 (370)
T ss_pred             ccccCCCC-------CcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccH------------
Confidence            99884111       23556899999977 88  323 4 4889999999999999999999986211            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMV  587 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~  587 (614)
                           .........+.. ..|..       +.  -..+..+..+|+..+|.+|+++.|++
T Consensus       229 -----~~l~~ki~~~~~-~~p~~-------~~--S~~~~~Li~~mL~~~P~~R~t~~~i~  273 (370)
T KOG0583|consen  229 -----PNLYRKIRKGEF-KIPSY-------LL--SPEARSLIEKMLVPDPSTRITLLEIL  273 (370)
T ss_pred             -----HHHHHHHhcCCc-cCCCC-------cC--CHHHHHHHHHHcCCCcccCCCHHHHh
Confidence                 111111111111 11110       00  11233456688999999999999998

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.78  E-value=8e-19  Score=180.18  Aligned_cols=175  Identities=23%  Similarity=0.310  Sum_probs=123.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ..++..++||||+++|+|.+++....             ....++|.++++++.++                  |+||++
T Consensus        88 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill  167 (334)
T cd05100          88 TQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLV  167 (334)
T ss_pred             ccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEE
Confidence            34567899999999999999987532             22358898888887777                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      ++++.+||+|||+++........     .......++..|+| |.  ...++.++|||||||++|||++ |..||.....
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  242 (334)
T cd05100         168 TEDNVMKIADFGLARDVHNIDYY-----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV  242 (334)
T ss_pred             cCCCcEEECCcccceeccccccc-----ccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCH
Confidence            99999999999999866433211     11222344567877 76  5678899999999999999999 8888864211


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                                       .+.. ..+.........         ......+.+++..|++.+|++||+|.|+++.|+.+..
T Consensus       243 -----------------~~~~-~~~~~~~~~~~~---------~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~  295 (334)
T cd05100         243 -----------------EELF-KLLKEGHRMDKP---------ANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLT  295 (334)
T ss_pred             -----------------HHHH-HHHHcCCCCCCC---------CCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhh
Confidence                             1111 111111110000         0112245577889999999999999999999998874


Q ss_pred             Hh
Q 046036          596 VL  597 (614)
Q Consensus       596 ~~  597 (614)
                      ..
T Consensus       296 ~~  297 (334)
T cd05100         296 VT  297 (334)
T ss_pred             hc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.78  E-value=3.9e-19  Score=179.16  Aligned_cols=176  Identities=18%  Similarity=0.234  Sum_probs=117.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC---------CCcccCHHHHHHHHhhC------------------CCceeeCCCC
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE---------ATRRLDLAEGLKIAVDI------------------PSNVLLDYDM  443 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~---------~~~~l~~~~~~~ia~~i------------------~~NILld~~~  443 (614)
                      ...+..++||||+++|+|.+++....         ....++|.++.+++.++                  |+||++++++
T Consensus        87 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~~~  166 (295)
T cd05097          87 VSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHY  166 (295)
T ss_pred             cCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcCCC
Confidence            34567899999999999999986432         11247888888877776                  9999999999


Q ss_pred             CeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh--CCCCCCcccccCc
Q 046036          444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT--GKRPTDEMFADCL  518 (614)
Q Consensus       444 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt--G~~p~~~~~~~~~  518 (614)
                      .+|++|||+++........     .......+++.|+| |+  ...++.++|||||||+++||++  |..||......  
T Consensus       167 ~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~--  239 (295)
T cd05097         167 TIKIADFGMSRNLYSGDYY-----RIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDE--  239 (295)
T ss_pred             cEEecccccccccccCcce-----eccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChH--
Confidence            9999999999865433211     11223445778866 76  6778999999999999999998  55676542111  


Q ss_pred             hHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          519 SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       519 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                      ......        .+.............+.          .....+.+++.+|++.+|++||+|.+|++.|+
T Consensus       240 ~~~~~~--------~~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         240 QVIENT--------GEFFRNQGRQIYLSQTP----------LCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHHHH--------HHhhhhccccccCCCCC----------CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            111000        00001000000000010          01135667889999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.78  E-value=5.1e-19  Score=180.95  Aligned_cols=112  Identities=22%  Similarity=0.293  Sum_probs=92.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        65 ~~~~~~~lv~Ey~~~g~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~  141 (328)
T cd05593          65 QTKDRLCFVMEYVNGGELFFHLSRE---RVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGL  141 (328)
T ss_pred             EcCCEEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcC
Confidence            4467789999999999999998753   358888887777766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||++|||+||+.||..
T Consensus       142 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~  197 (328)
T cd05593         142 CKEGITDA-------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  197 (328)
T ss_pred             CccCCCcc-------cccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCC
Confidence            97543221       12334679999977 87  56789999999999999999999999964

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.78  E-value=3.2e-21  Score=165.27  Aligned_cols=165  Identities=30%  Similarity=0.507  Sum_probs=134.2

Q ss_pred             CCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCC
Q 046036           31 LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKL  110 (614)
Q Consensus        31 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  110 (614)
                      +.++++.+.|-||+|+++ .+|+.   +..+. +|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppn---ia~l~-nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPN---IAELK-NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCc---HHHhh-hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            445677888888888888 56666   56666 7888888888887 78888888888888888888887 788888888


Q ss_pred             CCCCcccccccccccceEecCCCccc-cccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc
Q 046036          111 QNLQKLNPLATSLYSFQLNLAENNLT-GNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPL  189 (614)
Q Consensus       111 ~~L~~L~l~~~~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  189 (614)
                      +.|+.||            |++|++. ..+|..|..++.|+-|+|+.|.+. .+|..++.+++|+.|.+.+|.+- .+|.
T Consensus       102 p~levld------------ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk  167 (264)
T KOG0617|consen  102 PALEVLD------------LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK  167 (264)
T ss_pred             chhhhhh------------ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence            8888887            8888876 457788888888889999999888 78888888899999999988887 7888


Q ss_pred             cccCCCCCceeccCCccCCCCccccccC
Q 046036          190 EVGSLSNTQELDFSEHMLSDEIPITLGN  217 (614)
Q Consensus       190 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~  217 (614)
                      +++.+..|++|.+.+|.++. +|..+++
T Consensus       168 eig~lt~lrelhiqgnrl~v-lppel~~  194 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTV-LPPELAN  194 (264)
T ss_pred             HHHHHHHHHHHhcccceeee-cChhhhh
Confidence            88899999999999998884 4544443

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.78  E-value=5.3e-19  Score=176.51  Aligned_cols=168  Identities=24%  Similarity=0.295  Sum_probs=116.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC----CcccCHHHHHHHHhhC------------------CCceeeCCCC---Cee
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA----TRRLDLAEGLKIAVDI------------------PSNVLLDYDM---TAY  446 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~----~~~l~~~~~~~ia~~i------------------~~NILld~~~---~~k  446 (614)
                      ..+..++||||+++|+|.++++..+.    ...++|..+.+++.++                  |+||+++.++   .+|
T Consensus        80 ~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~k  159 (277)
T cd05036          80 ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAK  159 (277)
T ss_pred             cCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceE
Confidence            34567899999999999999975431    2358999988888777                  9999998754   599


Q ss_pred             ecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHH
Q 046036          447 VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHN  522 (614)
Q Consensus       447 l~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~  522 (614)
                      ++|||+++........     .......+++.|+| |+  ...++.++|||||||+++||++ |+.||......      
T Consensus       160 l~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~------  228 (277)
T cd05036         160 IADFGMARDIYRASYY-----RKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQ------  228 (277)
T ss_pred             eccCccccccCCccce-----ecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH------
Confidence            9999999876432210     01112234567876 87  6779999999999999999997 99998753211      


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                                 +..+. +.........  .       .....+.+++..|++.+|++||++.+|++.|+
T Consensus       229 -----------~~~~~-~~~~~~~~~~--~-------~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         229 -----------EVMEF-VTGGGRLDPP--K-------GCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             -----------HHHHH-HHcCCcCCCC--C-------CCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence                       11111 1111100000  0       11234556788999999999999999999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.78  E-value=5.7e-19  Score=180.14  Aligned_cols=112  Identities=22%  Similarity=0.344  Sum_probs=91.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|..++...   ..+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~E~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~  142 (321)
T cd05591          66 QTKDRLFFVMEYVNGGDLMFQIQRS---RKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGM  142 (321)
T ss_pred             EcCCeEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeeccc
Confidence            3456789999999999999998743   357888777777666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       .......||+.|+| |+  ...++.++|||||||++|||+||+.||..
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~  198 (321)
T cd05591         143 CKEGILNG-------VTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEA  198 (321)
T ss_pred             ceecccCC-------ccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCC
Confidence            87543222       12334679999977 87  56788999999999999999999999975

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.78  E-value=8.3e-19  Score=180.59  Aligned_cols=145  Identities=22%  Similarity=0.281  Sum_probs=98.8

Q ss_pred             ccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc
Q 046036          420 RLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM  481 (614)
Q Consensus       420 ~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a  481 (614)
                      .++|..+.+++.++                  |+||++++++.+|++|||+++........     .......+++.|+|
T Consensus       175 ~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~a  249 (343)
T cd05103         175 VLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY-----VRKGDARLPLKWMA  249 (343)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcch-----hhcCCCCCCcceEC
Confidence            36777777777776                  99999999999999999999865433211     11222345677966


Q ss_pred             -cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHH
Q 046036          482 -EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAK  557 (614)
Q Consensus       482 -E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  557 (614)
                       |+  ...++.++|||||||+++|+++ |..||......                 +.....+..........       
T Consensus       250 PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-----------------~~~~~~~~~~~~~~~~~-------  305 (343)
T cd05103         250 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-----------------EEFCRRLKEGTRMRAPD-------  305 (343)
T ss_pred             cHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcccc-----------------HHHHHHHhccCCCCCCC-------
Confidence             76  6678999999999999999997 89998642111                 00111111111100000       


Q ss_pred             HHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          558 IRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       558 ~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                        .....+.+++..|++.+|++||++.||++.|+.+.+
T Consensus       306 --~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         306 --YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             --CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence              011235678889999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.78  E-value=5.4e-19  Score=180.14  Aligned_cols=112  Identities=27%  Similarity=0.358  Sum_probs=91.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus        66 ~~~~~~~iv~Ey~~~g~L~~~i~~~---~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~  142 (320)
T cd05590          66 QTPDRLFFVMEFVNGGDLMFHIQKS---RRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGM  142 (320)
T ss_pred             EcCCEEEEEEcCCCCchHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCC
Confidence            3456789999999999999998753   357888777777666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       .......||+.|+| |.  ...++.++|||||||++|||++|+.||..
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  198 (320)
T cd05590         143 CKEGIFNG-------KTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEA  198 (320)
T ss_pred             CeecCcCC-------CcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCC
Confidence            87543221       12334679999977 87  56788999999999999999999999975

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=3.2e-21  Score=196.75  Aligned_cols=275  Identities=23%  Similarity=0.246  Sum_probs=163.6

Q ss_pred             eeeecCCccc-ccCCcCCCCCCCCcEEecccccCcccCCcChh-hhccccccccEEEccCCcccc------cCCCCCcCC
Q 046036           15 NLNFGNSTVQ-GEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLD-SFTNLSTKLRILDAGGNQFAG------DIPAGIPKY   86 (614)
Q Consensus        15 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~~~l~~~L~~L~L~~N~l~~------~~p~~~~~l   86 (614)
                      .|+|.++.++ ...+..|..+.+|++|++++|.++......+. .+...+ +|+.|+++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhc
Confidence            4666666666 34444555666677777777777532111111 133343 57777777776651      223345566


Q ss_pred             CCCCEEeccCCcCcccCCccccCCCC---CCcccccccccccceEecCCCcccc----ccchhhhcc-CCCCeeeccccc
Q 046036           87 FNLIQLGLDRNCLAGSIPFSIGKLQN---LQKLNPLATSLYSFQLNLAENNLTG----NIPESLENL-TSLQILNLSCNH  158 (614)
Q Consensus        87 ~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~l~~~~~~l~~L~L~~N~l~~----~~~~~~~~l-~~L~~L~L~~N~  158 (614)
                      ++|++|+|++|.+.+..+..+..+.+   |+.|+            +++|++++    .+...+..+ ++|+.|+|++|.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~------------ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELK------------LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEE------------eeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            77777777777776555555544444   55555            77777762    223345555 777777777777


Q ss_pred             CCCC----CCCCCCCCCCCCEEEcCCCCCccC----CcccccCCCCCceeccCCccCCCCc----cccccCcccchHHhc
Q 046036          159 LGGS----IPKPSGLFSTLSSIDFAHNNFNGS----LPLEVGSLSNTQELDFSEHMLSDEI----PITLGNRSKFEHLLL  226 (614)
Q Consensus       159 l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~----~~~~~~l~~L~~L~L  226 (614)
                      +++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..    ...+..+++|++|++
T Consensus       149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l  228 (319)
T cd00116         149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL  228 (319)
T ss_pred             CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence            7632    223344556777777777777632    2233445567777777777776432    334456677788888


Q ss_pred             cCccccccCCcccc-----CCCccceEEccCCcCcc----cCCcccCCCCCCCEEECcCCcCccc----CC-Ccccc-CC
Q 046036          227 GGNMFQGRIPPFFG-----SFKGTIDLNLSHNNLSG----TIPKELETLPFLENLNLSFNNFEGQ----LP-SMSVF-TN  291 (614)
Q Consensus       227 ~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~----~p-~~~~~-~~  291 (614)
                      ++|.+++.....+.     ..+.|+.|++++|.++.    .+...+..+++|+.+++++|.++..    .. ....+ ..
T Consensus       229 s~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~  308 (319)
T cd00116         229 GDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNE  308 (319)
T ss_pred             CCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCc
Confidence            88777642222222     23678888888888762    2334555667888888888888744    11 11222 45


Q ss_pred             CceEEEecCCC
Q 046036          292 TSVISIVGNGK  302 (614)
Q Consensus       292 l~~~~~~~N~~  302 (614)
                      +..+++.+||+
T Consensus       309 ~~~~~~~~~~~  319 (319)
T cd00116         309 LESLWVKDDSF  319 (319)
T ss_pred             hhhcccCCCCC
Confidence            56666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.78  E-value=1.2e-18  Score=173.02  Aligned_cols=172  Identities=24%  Similarity=0.390  Sum_probs=118.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++....  ..+++..+..++.++                  |+||+++.++.+|++|||+
T Consensus        75 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~  152 (269)
T cd05065          75 TKSRPVMIITEFMENGALDSFLRQND--GQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGL  152 (269)
T ss_pred             CCCCceEEEEecCCCCcHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCcc
Confidence            34566899999999999999997542  358888888887766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.........  .........++..|+| |+  ...++.++|||||||+++|+++ |..||......  ....++    
T Consensus       153 ~~~~~~~~~~~--~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~--~~~~~i----  224 (269)
T cd05065         153 SRFLEDDTSDP--TYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ--DVINAI----  224 (269)
T ss_pred             ccccccCcccc--ccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHH--HHHHHH----
Confidence            98765432210  0000111112457866 77  5678899999999999999887 99998653211  111111    


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                                  ........ .        .++...+.+++..|++.+|++||+|++|+..|+++
T Consensus       225 ------------~~~~~~~~-~--------~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         225 ------------EQDYRLPP-P--------MDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             ------------HcCCcCCC-c--------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                        11111000 0        11223345678899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.78  E-value=3e-19  Score=180.04  Aligned_cols=161  Identities=17%  Similarity=0.207  Sum_probs=114.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.++++..    .+++.++..++.++                  |+||+++.++.+||+|||++
T Consensus        88 ~~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~  163 (296)
T cd06654          88 VGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFC  163 (296)
T ss_pred             eCCEEEEeecccCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccc
Confidence            356789999999999999998642    47888888877766                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.......       ......|++.|+| |+  ...++.++|||||||+++||++|+.||........ ...        
T Consensus       164 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~-~~~--------  227 (296)
T cd06654         164 AQITPEQS-------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA-LYL--------  227 (296)
T ss_pred             hhcccccc-------ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHh-HHH--------
Confidence            86544321       1233568899977 87  56678999999999999999999999975322110 000        


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              ...... +......       .....+.++..+|+..+|++||++.|++.
T Consensus       228 --------~~~~~~-~~~~~~~-------~~~~~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         228 --------IATNGT-PELQNPE-------KLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             --------HhcCCC-CCCCCcc-------ccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence                    000000 0000000       11123445677999999999999999996

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.78  E-value=8.8e-19  Score=172.26  Aligned_cols=166  Identities=20%  Similarity=0.287  Sum_probs=115.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...++|..+..++.++                  |+||+++.++.+|++|||+
T Consensus        63 ~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~  140 (252)
T cd05084          63 TQKQPIYIVMELVQGGDFLTFLRTE--GPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGM  140 (252)
T ss_pred             cCCCCeEEEEeeccCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECcccc
Confidence            3456689999999999999999753  2357888888777665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++........     .......++..|+| |+  .+.++.++|||||||+++|+++ |..||......            
T Consensus       141 ~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~------------  203 (252)
T cd05084         141 SREEEDGVYA-----STGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQ------------  203 (252)
T ss_pred             Cccccccccc-----ccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHH------------
Confidence            9765432110     00111223456866 76  6678899999999999999998 88888643211            


Q ss_pred             CCChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          529 PESVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                            .....+..... ..+.          .....+.+++.+|++.+|++|||+.||.++|+
T Consensus       204 ------~~~~~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         204 ------QTREAIEQGVRLPCPE----------LCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             ------HHHHHHHcCCCCCCcc----------cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence                  00111111100 0000          11224556788999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.78  E-value=9.9e-19  Score=173.51  Aligned_cols=169  Identities=21%  Similarity=0.383  Sum_probs=119.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++....  ..+++.+..+++.++                  |+||+++.++.+|++|||++
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~  153 (267)
T cd05066          76 KSKPVMIVTEYMENGSLDAFLRKHD--GQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLS  153 (267)
T ss_pred             cCCccEEEEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcc
Confidence            4567899999999999999997542  357888888887766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.+......    ........++..|+| |+  ...++.++|||||||+++|+++ |+.||......             
T Consensus       154 ~~~~~~~~~----~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~-------------  216 (267)
T cd05066         154 RVLEDDPEA----AYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQ-------------  216 (267)
T ss_pred             cccccccce----eeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHH-------------
Confidence            876543221    011122334567866 77  5678999999999999999887 99998653211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                          +..+. +.+.... +..        ......+.+++..|++.+|++||+|.++++.|+++
T Consensus       217 ----~~~~~-~~~~~~~-~~~--------~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         217 ----DVIKA-IEEGYRL-PAP--------MDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             ----HHHHH-HhCCCcC-CCC--------CCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence                11111 1111100 000        01122345677899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.78  E-value=4e-19  Score=181.44  Aligned_cols=156  Identities=20%  Similarity=0.247  Sum_probs=111.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+|++|||+
T Consensus        66 ~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~  142 (323)
T cd05575          66 QTADKLYFVLDYVNGGELFFHLQRE---RSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGL  142 (323)
T ss_pred             EeCCEEEEEEcCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCC
Confidence            3456789999999999999999753   257777777666665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||+++||++|+.||.....              
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~--------------  201 (323)
T cd05575         143 CKEGIEHS-------KTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDT--------------  201 (323)
T ss_pred             CcccccCC-------CccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCH--------------
Confidence            87543221       12344679999977 87  66788999999999999999999999974211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVR  584 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~  584 (614)
                         .+..+..+.......+    ...       ..+.++...|++.+|++||+++
T Consensus       202 ---~~~~~~i~~~~~~~~~----~~~-------~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         202 ---AEMYDNILNKPLRLKP----NIS-------VSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             ---HHHHHHHHcCCCCCCC----CCC-------HHHHHHHHHHhhcCHHhCCCCC
Confidence               1222222222111111    111       1233456688999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.78  E-value=6.6e-19  Score=179.75  Aligned_cols=112  Identities=21%  Similarity=0.278  Sum_probs=91.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|..++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        65 ~~~~~~~lv~E~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~  141 (323)
T cd05595          65 QTHDRLCFVMEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL  141 (323)
T ss_pred             ecCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHH
Confidence            3456789999999999999998753   257888887777666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       .......||+.|+| |+  ...++.++|||||||++|||++|+.||..
T Consensus       142 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~  197 (323)
T cd05595         142 CKEGISDG-------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  197 (323)
T ss_pred             hccccCCC-------CccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCC
Confidence            87543221       11234679999977 87  56789999999999999999999999964

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.78  E-value=8.1e-19  Score=176.21  Aligned_cols=170  Identities=18%  Similarity=0.251  Sum_probs=117.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC-------CcccCHHHHHHHHhhC------------------CCceeeCCCCCee
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA-------TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAY  446 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~-------~~~l~~~~~~~ia~~i------------------~~NILld~~~~~k  446 (614)
                      ..+..++||||+++|+|.+++.....       ....++....+++.++                  |+||++++++.+|
T Consensus        80 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~  159 (288)
T cd05061          80 KGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVK  159 (288)
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEE
Confidence            34567999999999999999974321       2335666666666665                  9999999999999


Q ss_pred             ecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHH
Q 046036          447 VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHN  522 (614)
Q Consensus       447 l~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~  522 (614)
                      ++|||+++........     .......++..|+| |+  ...++.++|||||||+++|+++ |..||.....       
T Consensus       160 L~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~-------  227 (288)
T cd05061         160 IGDFGMTRDIYETDYY-----RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN-------  227 (288)
T ss_pred             ECcCCccccccccccc-----cccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH-------
Confidence            9999999865433211     11122345677866 77  5678999999999999999999 7888864211       


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                                .+..+....+.....+.          .....+.+++..|++.+|++||||.++++.|+..
T Consensus       228 ----------~~~~~~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~  278 (288)
T cd05061         228 ----------EQVLKFVMDGGYLDQPD----------NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD  278 (288)
T ss_pred             ----------HHHHHHHHcCCCCCCCC----------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence                      11111111111111111          1123455778899999999999999999888754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.78  E-value=5.6e-19  Score=177.30  Aligned_cols=188  Identities=18%  Similarity=0.141  Sum_probs=117.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|++..+...   ...+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        70 ~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~  146 (287)
T cd07848          70 RRRGKLYLVFEYVEKNMLELLEEM---PNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGF  146 (287)
T ss_pred             ecCCEEEEEEecCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccC
Confidence            446678999999999877765432   2347777777776666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH--hh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE--MA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~--~~  527 (614)
                      ++.......      .......||+.|+| |+  ...++.++|||||||+++||++|+.||....... .+.....  ..
T Consensus       147 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~-~~~~~~~~~~~  219 (287)
T cd07848         147 ARNLSEGSN------ANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEID-QLFTIQKVLGP  219 (287)
T ss_pred             ccccccccc------ccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhhCC
Confidence            987643321      12234678999977 87  5678999999999999999999999997532211 1111111  11


Q ss_pred             CCCChHHHH--HHHHhcCcCCCCCCchhh-HHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELV--YSRLLQGVDKDAEDEPCM-KAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~--~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .+.......  ++.......+....+... .......-..+.++...|++.+|++|||++|+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         220 LPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             CCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            111100000  000000000000000000 0001112234667888999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.78  E-value=5.5e-19  Score=181.28  Aligned_cols=164  Identities=20%  Similarity=0.243  Sum_probs=114.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~  147 (333)
T cd05600          71 QDDEYLYLAMEYVPGGDFRTLLNNL---GVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGL  147 (333)
T ss_pred             EcCCEEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcC
Confidence            3466789999999999999999753   247777766666655                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCc--hHHHHHHhh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL--SLHNFCEMA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~--~l~~~~~~~  527 (614)
                      ++.....          .....||+.|+| |+  ...++.++|||||||++|||++|+.||........  .+..|..  
T Consensus       148 a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~--  215 (333)
T cd05600         148 SKGIVTY----------ANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKE--  215 (333)
T ss_pred             Ccccccc----------cCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccc--
Confidence            9765431          234679999977 87  56789999999999999999999999975322110  0000000  


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                 .+.....  ...+.       .....+.++...|+..+|++||++.|+++.
T Consensus       216 -----------~~~~~~~--~~~~~-------~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         216 -----------TLQRPVY--DDPRF-------NLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             -----------cccCCCC--Ccccc-------ccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence                       0000000  00000       111233456668999999999999999864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.78  E-value=1.1e-20  Score=161.96  Aligned_cols=164  Identities=30%  Similarity=0.489  Sum_probs=114.6

Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCC
Q 046036           84 PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSI  163 (614)
Q Consensus        84 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  163 (614)
                      .++.+.+.|.||+|+++ .+|..+..+.+|+.|+            +++|+|+ .+|.+++.+++|+.|+++-|++. ..
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln------------~~nnqie-~lp~~issl~klr~lnvgmnrl~-~l   94 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLN------------LSNNQIE-ELPTSISSLPKLRILNVGMNRLN-IL   94 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhh------------cccchhh-hcChhhhhchhhhheecchhhhh-cC
Confidence            34445555555555555 4444555555555554            5555555 44455555555555555555554 44


Q ss_pred             CCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCC-CccccccCcccchHHhccCccccccCCccccCC
Q 046036          164 PKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD-EIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSF  242 (614)
Q Consensus       164 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  242 (614)
                      |..|+.+                        +.|+.|||.+|++.. ..|..|..+..|+.|+|+.|.+. .+|..++++
T Consensus        95 prgfgs~------------------------p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~l  149 (264)
T KOG0617|consen   95 PRGFGSF------------------------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKL  149 (264)
T ss_pred             ccccCCC------------------------chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhh
Confidence            4445444                        445555555554432 45777888899999999999998 889999999


Q ss_pred             CccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccc
Q 046036          243 KGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSV  288 (614)
Q Consensus       243 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~  288 (614)
                      ++|+.|.+.+|.+- ..|..++.++.|+.|.+.+|+++-.+|..+.
T Consensus       150 t~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  150 TNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             cceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence            99999999999998 7899999999999999999999988887654

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.78  E-value=6.4e-19  Score=175.03  Aligned_cols=168  Identities=19%  Similarity=0.229  Sum_probs=117.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCC-CCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPN-EATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~-~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~D  449 (614)
                      +..++..++||||+++|+|.+++... .....+++..+.+++.++                   |+||+++.++.+|++|
T Consensus        78 ~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~d  157 (269)
T cd08528          78 FLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITD  157 (269)
T ss_pred             EccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEec
Confidence            34467789999999999999988532 123457777777776655                   8999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||++.......        ......|+..|+| |+  ...++.++|||||||++||+++|+.||.....           
T Consensus       158 fg~~~~~~~~~--------~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~-----------  218 (269)
T cd08528         158 FGLAKQKQPES--------KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNM-----------  218 (269)
T ss_pred             ccceeeccccc--------ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCH-----------
Confidence            99998755432        1234568889966 87  56688999999999999999999999864211           


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                            .............+.+..         .....+.+++.+|++.+|++||+|.||.++++
T Consensus       219 ------~~~~~~~~~~~~~~~~~~---------~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         219 ------LSLATKIVEAVYEPLPEG---------MYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             ------HHHHHHHhhccCCcCCcc---------cCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence                  011111111111100000         01123445667999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.77  E-value=4.2e-19  Score=180.61  Aligned_cols=111  Identities=25%  Similarity=0.391  Sum_probs=90.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++....   .+++.....++.++                  |+||+++.++.+||+|||++
T Consensus        67 ~~~~~~lv~e~~~gg~L~~~~~~~~---~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a  143 (316)
T cd05592          67 TKEHLFFVMEYLNGGDLMFHIQSSG---RFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMC  143 (316)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCC
Confidence            4567899999999999999997532   47777777666666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +......       ......+||+.|+| |.  ...++.++|||||||+++||++|+.||..
T Consensus       144 ~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~  198 (316)
T cd05592         144 KENMNGE-------GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHG  198 (316)
T ss_pred             eECCCCC-------CccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCC
Confidence            8643322       12334679999977 87  56789999999999999999999999975

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.77  E-value=1.3e-18  Score=172.75  Aligned_cols=169  Identities=21%  Similarity=0.304  Sum_probs=117.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC----CCcccCHHHHHHHHhhC------------------CCceeeCCCC-----
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE----ATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-----  443 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~----~~~~l~~~~~~~ia~~i------------------~~NILld~~~-----  443 (614)
                      ...+..++||||+++|+|.++++...    ....++|.++..++.++                  |+||+++.+.     
T Consensus        69 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~  148 (269)
T cd05044          69 LLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADR  148 (269)
T ss_pred             cCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCc
Confidence            34567899999999999999997532    22347888888887776                  9999999877     


Q ss_pred             CeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCch
Q 046036          444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLS  519 (614)
Q Consensus       444 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~  519 (614)
                      .+|++|||+++........     .......++..|+| |+  ...++.++|||||||++|||+| |+.||.....  ..
T Consensus       149 ~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~--~~  221 (269)
T cd05044         149 VVKIGDFGLARDIYKSDYY-----RKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN--QE  221 (269)
T ss_pred             ceEECCccccccccccccc-----ccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH--HH
Confidence            8999999999865433211     11122345678876 87  6778999999999999999998 9999864211  11


Q ss_pred             HHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          520 LHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       520 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                      ....                +.........         ......+.+++.+|++.+|++||+|.+|.+.|+
T Consensus       222 ~~~~----------------~~~~~~~~~~---------~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~  268 (269)
T cd05044         222 VLQH----------------VTAGGRLQKP---------ENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ  268 (269)
T ss_pred             HHHH----------------HhcCCccCCc---------ccchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            1110                1000000000         011234456778999999999999999999886

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.77  E-value=6.9e-19  Score=180.02  Aligned_cols=112  Identities=21%  Similarity=0.317  Sum_probs=90.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|..++...   ..+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~E~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~  142 (329)
T cd05618          66 QTESRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM  142 (329)
T ss_pred             EeCCEEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCc
Confidence            3456789999999999999988643   357787777776666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       .......||+.|+| |+  ...++.++|||||||+++||+||+.||..
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  198 (329)
T cd05618         143 CKEGLRPG-------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             cccccCCC-------CccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCcc
Confidence            97543221       11334689999977 87  66788999999999999999999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.77  E-value=4.1e-19  Score=176.50  Aligned_cols=117  Identities=22%  Similarity=0.338  Sum_probs=87.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC--CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE--ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~--~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      ......++||||+++|+|.++++...  .....+|..+.+++.++                  |+||+++.++.+|++||
T Consensus        65 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~df  144 (269)
T cd05087          65 TEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDY  144 (269)
T ss_pred             cCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCc
Confidence            34566799999999999999997532  12345666666666555                  99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc-c--------CCCCccCceeehhHHHHHHHh-CCCCCCc
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V--------ARYQHKGKGYSCGILLLEIMT-GKRPTDE  512 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~--------~~~~~k~DVySfGvvllEllt-G~~p~~~  512 (614)
                      |+++........     .......|++.|+| |+ .        ..++.++|||||||+++||++ |+.||..
T Consensus       145 g~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~  212 (269)
T cd05087         145 GLSHNKYKEDYY-----VTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRH  212 (269)
T ss_pred             cccccccCccee-----ecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCC
Confidence            999765433211     11233567888966 86 2        135789999999999999996 9999965

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.77  E-value=5.4e-19  Score=176.40  Aligned_cols=168  Identities=23%  Similarity=0.279  Sum_probs=116.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+.+.++||||+++|+|.++++... ...++|..+..++.++                  |+||+++.++.+||+|||+
T Consensus        63 ~~~~~~~lv~e~~~g~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~  141 (277)
T cd05607          63 ESKTHLCLVMSLMNGGDLKYHIYNVG-ERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGL  141 (277)
T ss_pred             ecCCeEEEEEecCCCCCHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeecee
Confidence            34567899999999999999886542 3358888887776666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......        ......|++.|+| |+  ...++.++||||+||++|||++|+.||....... ..         
T Consensus       142 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~-~~---------  203 (277)
T cd05607         142 AVELKDGK--------TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKV-AK---------  203 (277)
T ss_pred             eeecCCCc--------eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchh-hH---------
Confidence            97664332        1233568999977 87  5668999999999999999999999986422110 00         


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                         .++....+...... +.  ..       ....+.++...|++.+|++||+++|+++..
T Consensus       204 ---~~~~~~~~~~~~~~-~~--~~-------~~~~~~~li~~~L~~~P~~R~~~~~~~~~~  251 (277)
T cd05607         204 ---EELKRRTLEDEVKF-EH--QN-------FTEESKDICRLFLAKKPEDRLGSREKNDDP  251 (277)
T ss_pred             ---HHHHHHhhcccccc-cc--cc-------CCHHHHHHHHHHhccCHhhCCCCccchhhh
Confidence               01111111111100 00  00       111234677789999999999998776433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.77  E-value=3.5e-19  Score=181.09  Aligned_cols=112  Identities=23%  Similarity=0.373  Sum_probs=91.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~ey~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~  142 (316)
T cd05619          66 QTKENLFFVMEYLNGGDLMFHIQSC---HKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGM  142 (316)
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCc
Confidence            3456789999999999999999743   357888777777766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       .......||+.|+| |+  ...++.++|||||||++|||++|+.||..
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~  198 (316)
T cd05619         143 CKENMLGD-------AKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHG  198 (316)
T ss_pred             ceECCCCC-------CceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCC
Confidence            87543221       12334679999977 87  56789999999999999999999999975

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.77  E-value=6.5e-19  Score=177.67  Aligned_cols=176  Identities=19%  Similarity=0.250  Sum_probs=117.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC--------CCcccCHHHHHHHHhhC------------------CCceeeCCCCC
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE--------ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT  444 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~--------~~~~l~~~~~~~ia~~i------------------~~NILld~~~~  444 (614)
                      ...+..++||||+++|+|.+++....        ....++|.+...++.++                  |+||++++++.
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~~~~  168 (296)
T cd05095          89 ITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYT  168 (296)
T ss_pred             ecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcCCCC
Confidence            34566899999999999999997532        11347788888887776                  99999999999


Q ss_pred             eeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh--CCCCCCcccccCch
Q 046036          445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT--GKRPTDEMFADCLS  519 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt--G~~p~~~~~~~~~~  519 (614)
                      +|++|||+++.+......     .......+++.|++ |.  .+.++.++|||||||++|||+|  |..||......  .
T Consensus       169 ~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~--~  241 (296)
T cd05095         169 IKIADFGMSRNLYSGDYY-----RIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDE--Q  241 (296)
T ss_pred             EEeccCcccccccCCcce-----eccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChH--H
Confidence            999999999866433211     11122334567866 75  6778999999999999999998  66777542211  1


Q ss_pred             HHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          520 LHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       520 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                      ....        ..+...........+.+.          .+...+.+++.+|++.+|++||+|.||++.|+
T Consensus       242 ~~~~--------~~~~~~~~~~~~~~~~~~----------~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         242 VIEN--------TGEFFRDQGRQVYLPKPA----------LCPDSLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHH--------HHHHHhhccccccCCCCC----------CCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            0000        001111000000000110          11234557888999999999999999999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.77  E-value=1.2e-18  Score=171.70  Aligned_cols=161  Identities=22%  Similarity=0.287  Sum_probs=116.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++||||+++|+|.+++.... ...+++.++..++.++                  |+||+++.++.++++|||+++
T Consensus        72 ~~~~~lv~e~~~~~~l~~~l~~~~-~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~  150 (257)
T cd08223          72 DGLLYIVMGFCEGGDLYHKLKEQK-GKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIAR  150 (257)
T ss_pred             CCEEEEEecccCCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceE
Confidence            345789999999999999997532 3458888888887776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......       ......|++.|+| |+  ...++.++|||||||+++|+++|+.||+....                
T Consensus       151 ~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~----------------  207 (257)
T cd08223         151 VLENQCD-------MASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM----------------  207 (257)
T ss_pred             EecccCC-------ccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH----------------
Confidence            7643321       1234568899977 87  56788999999999999999999999864211                


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       .+.....+.+.....+          ...-..+.+++..|++.+|++||++.++++
T Consensus       208 -~~~~~~~~~~~~~~~~----------~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         208 -NSLVYRIIEGKLPPMP----------KDYSPELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             -HHHHHHHHhcCCCCCc----------cccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence             1111111111110000          011123456778999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=3.7e-21  Score=196.26  Aligned_cols=260  Identities=24%  Similarity=0.307  Sum_probs=184.5

Q ss_pred             cccCCCCCCeeeecCCccccc----CCcCCCCCCCCcEEecccccCcccCCcCh----hhhccccccccEEEccCCcccc
Q 046036            6 EIGNLFRLQNLNFGNSTVQGE----IPSHLSPTSKLTYLSLFSNNLHGIIPPSL----DSFTNLSTKLRILDAGGNQFAG   77 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~~~~l~~~L~~L~L~~N~l~~   77 (614)
                      -|..+.+|+.|++++|.++..    ++..+...++|++|+++++.+.+ .+..+    ..+..++ +|+.|++++|.+.+
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~   95 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGC-GLQELDLSDNALGP   95 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcC-ceeEEEccCCCCCh
Confidence            344567799999999998533    45566778889999999988763 12211    1255666 89999999999876


Q ss_pred             cCCCCCcCCCC---CCEEeccCCcCcc----cCCccccCC-CCCCcccccccccccceEecCCCccccc----cchhhhc
Q 046036           78 DIPAGIPKYFN---LIQLGLDRNCLAG----SIPFSIGKL-QNLQKLNPLATSLYSFQLNLAENNLTGN----IPESLEN  145 (614)
Q Consensus        78 ~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~l~~~~~~l~~L~L~~N~l~~~----~~~~~~~  145 (614)
                      ..+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|+            |++|.+++.    ++..+..
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~------------L~~n~l~~~~~~~~~~~~~~  163 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV------------LGRNRLEGASCEALAKALRA  163 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE------------cCCCcCCchHHHHHHHHHHh
Confidence            55555555554   9999999998873    233345555 6777666            999998843    3445677


Q ss_pred             cCCCCeeecccccCCCC----CCCCCCCCCCCCEEEcCCCCCccCC----cccccCCCCCceeccCCccCCCCcccccc-
Q 046036          146 LTSLQILNLSCNHLGGS----IPKPSGLFSTLSSIDFAHNNFNGSL----PLEVGSLSNTQELDFSEHMLSDEIPITLG-  216 (614)
Q Consensus       146 l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~ls~N~l~~~~~~~~~-  216 (614)
                      +++|++|++++|.+++.    ++..+..+++|++|++++|.+++..    ...+..+++|++|++++|.+++.....+. 
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~  243 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS  243 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence            78899999999998742    2333455678999999999887433    34456778899999999998763333332 


Q ss_pred             ----CcccchHHhccCccccc----cCCccccCCCccceEEccCCcCccc----CCcccCCC-CCCCEEECcCCcC
Q 046036          217 ----NRSKFEHLLLGGNMFQG----RIPPFFGSFKGTIDLNLSHNNLSGT----IPKELETL-PFLENLNLSFNNF  279 (614)
Q Consensus       217 ----~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~ls~N~l  279 (614)
                          ..+.|+.|++++|.++.    .+...+..+++|+++++++|.++..    ....+... +.|+.+++.+|++
T Consensus       244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence                23789999999998862    2334556668899999999999854    44445555 7888999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.77  E-value=1.2e-18  Score=177.95  Aligned_cols=160  Identities=19%  Similarity=0.205  Sum_probs=110.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...+   .+.+.....++.++                  |+|||++.++.+||+|||+
T Consensus        70 ~~~~~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  146 (323)
T cd05584          70 QTGGKLYLILEYLSGGELFMHLEREG---IFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGL  146 (323)
T ss_pred             ecCCeEEEEEeCCCCchHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcC
Confidence            34567899999999999999997532   35555555554444                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       .......||+.|+| |+  ...++.++|||||||+++||++|+.||.....              
T Consensus       147 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~--------------  205 (323)
T cd05584         147 CKESIHEG-------TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR--------------  205 (323)
T ss_pred             CeecccCC-------CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH--------------
Confidence            97543322       11334679999977 87  55678999999999999999999999975211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~  588 (614)
                         .+.+...+...... |.   ..       ...+.++...|++.+|++||     ++.+++.
T Consensus       206 ---~~~~~~~~~~~~~~-~~---~~-------~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         206 ---KKTIDKILKGKLNL-PP---YL-------TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             ---HHHHHHHHcCCCCC-CC---CC-------CHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence               11111111111110 10   01       11234566789999999999     7777765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.77  E-value=1.2e-18  Score=176.30  Aligned_cols=169  Identities=22%  Similarity=0.350  Sum_probs=119.6

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++|+||+++|+|.+++...  ...+++..+..++.++                  |+||++++++.+||+|||+++..
T Consensus        82 ~~~~v~e~~~~g~l~~~~~~~--~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~  159 (303)
T cd05110          82 TIQLVTQLMPHGCLLDYVHEH--KDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (303)
T ss_pred             CceeeehhcCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccc
Confidence            467999999999999999754  2357888777777766                  99999999999999999999876


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      ......     .......++..|+| |+  ...++.++|||||||++||+++ |+.||......  ....+         
T Consensus       160 ~~~~~~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~--~~~~~---------  223 (303)
T cd05110         160 EGDEKE-----YNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTR--EIPDL---------  223 (303)
T ss_pred             cCcccc-----cccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH---------
Confidence            543221     11223456778876 76  5678899999999999999998 89998653211  11111         


Q ss_pred             HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          533 MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       533 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                             +...... + ..+       .+...+.+++..||..+|++||+|+++++.|+++....
T Consensus       224 -------~~~~~~~-~-~~~-------~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~~  272 (303)
T cd05110         224 -------LEKGERL-P-QPP-------ICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARDP  272 (303)
T ss_pred             -------HHCCCCC-C-CCC-------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhch
Confidence                   1111100 0 000       11224456788999999999999999999999876543

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.77  E-value=5.6e-19  Score=181.19  Aligned_cols=113  Identities=22%  Similarity=0.299  Sum_probs=90.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        75 ~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~  151 (332)
T cd05614          75 QTEAKLHLILDYVSGGEMFTHLYQR---DNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGL  151 (332)
T ss_pred             ecCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcC
Confidence            3456789999999999999999753   247777777666655                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c--CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V--ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~--~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.......      .......||+.|+| |+ .  ..++.++|||||||+++||+||+.||..
T Consensus       152 ~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~  209 (332)
T cd05614         152 SKEFLSEEK------ERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTL  209 (332)
T ss_pred             CccccccCC------CccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCC
Confidence            986543321      12334679999977 87 2  3478899999999999999999999964

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.77  E-value=1.2e-18  Score=175.11  Aligned_cols=169  Identities=23%  Similarity=0.302  Sum_probs=117.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------------------CCcccCHHHHHHHHhhC------------------
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------------------ATRRLDLAEGLKIAVDI------------------  433 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------------~~~~l~~~~~~~ia~~i------------------  433 (614)
                      ..++..++||||+++|+|.+++....                   ....++|..++.++.++                  
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~  157 (288)
T cd05050          78 AVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLA  157 (288)
T ss_pred             cCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeeccccc
Confidence            34567899999999999999996421                   11347788888888777                  


Q ss_pred             CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCC
Q 046036          434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRP  509 (614)
Q Consensus       434 ~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p  509 (614)
                      |+||++++++.+|++|||+++........     .......+++.|+| |.  ...++.++|||||||++|||++ |..|
T Consensus       158 p~nil~~~~~~~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p  232 (288)
T cd05050         158 TRNCLVGENMVVKIADFGLSRNIYSADYY-----KASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQP  232 (288)
T ss_pred             HhheEecCCCceEECccccceecccCccc-----cccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999865433211     11122344667976 76  6778999999999999999998 8888


Q ss_pred             CCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          510 TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       510 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      |......                 +.............+.          .....+.+++.+|++.+|++|||+.|+++.
T Consensus       233 ~~~~~~~-----------------~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~~p~~Rpt~~el~~~  285 (288)
T cd05050         233 YYGMAHE-----------------EVIYYVRDGNVLSCPD----------NCPLELYNLMRLCWSKLPSDRPSFASINRI  285 (288)
T ss_pred             CCCCCHH-----------------HHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHcccCcccCCCHHHHHHH
Confidence            8642211                 1111111111100011          112345568889999999999999999999


Q ss_pred             HH
Q 046036          590 MN  591 (614)
Q Consensus       590 L~  591 (614)
                      |+
T Consensus       286 l~  287 (288)
T cd05050         286 LQ  287 (288)
T ss_pred             hh
Confidence            86

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.77  E-value=1.1e-18  Score=174.77  Aligned_cols=170  Identities=16%  Similarity=0.212  Sum_probs=118.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ...+..++|+||+++|+|.+++....             ....+++..+.+++.++                  |+||++
T Consensus        78 ~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~  157 (283)
T cd05091          78 TKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLV  157 (283)
T ss_pred             cCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEe
Confidence            34556889999999999999985321             12347888887777766                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      ++++.+|++|||+++........     .......+++.|+| |.  ...++.++|||||||+++||+| |..||.....
T Consensus       158 ~~~~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~  232 (283)
T cd05091         158 FDKLNVKISDLGLFREVYAADYY-----KLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN  232 (283)
T ss_pred             cCCCceEecccccccccccchhe-----eeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            99999999999999876433211     11223456788977 87  5778999999999999999998 8888764211


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                                       .+..+........+.+.          .+...+.+++..|++.+|++||+|+||+..|+.
T Consensus       233 -----------------~~~~~~i~~~~~~~~~~----------~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         233 -----------------QDVIEMIRNRQVLPCPD----------DCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             -----------------HHHHHHHHcCCcCCCCC----------CCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence                             11111111111111111          122234567889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.77  E-value=1.5e-18  Score=170.91  Aligned_cols=160  Identities=22%  Similarity=0.359  Sum_probs=114.7

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++|+|.+++.... ...+++..+.+++.++                  |+||+++.++.+|++|||+++.
T Consensus        71 ~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~  149 (254)
T cd05083          71 NGLYIVMELMSKGNLVNFLRTRG-RALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARV  149 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCcccee
Confidence            34689999999999999997542 3457888888877766                  9999999999999999999976


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .....          .....+..|+| |+  ...++.++|||||||+++||++ |+.||......               
T Consensus       150 ~~~~~----------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~---------------  204 (254)
T cd05083         150 GSMGV----------DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLK---------------  204 (254)
T ss_pred             ccccC----------CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHH---------------
Confidence            43221          11233567866 76  5678899999999999999998 99998643211               


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                        + ....+.......+.+         .....+.+++..|++.+|++||++.+++..|+
T Consensus       205 --~-~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  252 (254)
T cd05083         205 --E-VKECVEKGYRMEPPE---------GCPADVYVLMTSCWETEPKKRPSFHKLREKLE  252 (254)
T ss_pred             --H-HHHHHhCCCCCCCCC---------cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHc
Confidence              1 111111111111111         11223446778999999999999999999886

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.77  E-value=9.8e-19  Score=174.82  Aligned_cols=115  Identities=22%  Similarity=0.307  Sum_probs=93.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      ..++..++|||||++|+|.+++.... ....+++..+..++.++                  |+||+++.++.+|++|||
T Consensus        63 ~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg  142 (280)
T cd05608          63 QTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLG  142 (280)
T ss_pred             cCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCc
Confidence            34567899999999999998885422 23468888888887776                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++.+.....       ......||+.|+| |.  ...++.++|||||||++|||++|+.||..
T Consensus       143 ~~~~~~~~~~-------~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~  199 (280)
T cd05608         143 LAVELKDGQS-------KTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRA  199 (280)
T ss_pred             cceecCCCCc-------cccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence            9986654321       1334679999977 87  66788999999999999999999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.77  E-value=9.9e-19  Score=176.31  Aligned_cols=176  Identities=18%  Similarity=0.272  Sum_probs=119.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC--------CCcccCHHHHHHHHhhC------------------CCceeeCCCCC
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE--------ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT  444 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~--------~~~~l~~~~~~~ia~~i------------------~~NILld~~~~  444 (614)
                      ..++..++||||+++|+|.+++....        ....++|.....++.++                  |+||+++.++.
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~~~~  168 (296)
T cd05051          89 TVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYT  168 (296)
T ss_pred             ecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecCCCc
Confidence            34567899999999999999997543        12258888888887776                  99999999999


Q ss_pred             eeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh--CCCCCCcccccCch
Q 046036          445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT--GKRPTDEMFADCLS  519 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt--G~~p~~~~~~~~~~  519 (614)
                      ++++|||+++........     .......+++.|+| |+  ...++.++|||||||++|||++  |..||.....  ..
T Consensus       169 ~~l~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~--~~  241 (296)
T cd05051         169 IKIADFGMSRNLYSSDYY-----RVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD--QQ  241 (296)
T ss_pred             eEEccccceeecccCcce-----eecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh--HH
Confidence            999999999865443221     11223456788977 87  5688999999999999999998  6677754221  11


Q ss_pred             HHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          520 LHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       520 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                      ......            ..............+      ......+.+++..|++.+|++||||.||++.|+
T Consensus       242 ~~~~~~------------~~~~~~~~~~~~~~~------~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         242 VIENAG------------HFFRDDGRQIYLPRP------PNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHH------------hccccccccccCCCc------cCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            111110            000000000000000      011235667889999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.77  E-value=1.2e-18  Score=173.35  Aligned_cols=162  Identities=20%  Similarity=0.203  Sum_probs=114.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++.... ...++|.....++.++                  |+||++++++.+|++|||+++
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~-~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~  159 (272)
T cd06637          81 DDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  159 (272)
T ss_pred             CcEEEEEEEcCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCce
Confidence            356899999999999999997542 3458888888777766                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-c------CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      .......       ......|++.|+| |+ .      ..++.++|||||||++|||++|+.||.......    ...  
T Consensus       160 ~~~~~~~-------~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~----~~~--  226 (272)
T cd06637         160 QLDRTVG-------RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR----ALF--  226 (272)
T ss_pred             ecccccc-------cCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHH----HHH--
Confidence            6543221       1334678999977 76 1      257789999999999999999999986432110    000  


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                 ..... ..... ...       .....+.++..+|++.+|.+|||+.|+++
T Consensus       227 -----------~~~~~-~~~~~-~~~-------~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         227 -----------LIPRN-PAPRL-KSK-------KWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             -----------HHhcC-CCCCC-CCC-------CcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence                       00000 00000 000       11123446777999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.77  E-value=9.2e-19  Score=172.53  Aligned_cols=163  Identities=21%  Similarity=0.250  Sum_probs=118.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+++.++||||+++|+|.+++.... ...+++.+..+++.++                  |+||+++.++.++++|||+
T Consensus        69 ~~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~  147 (256)
T cd08218          69 EENGNLYIVMDYCEGGDLYKKINAQR-GVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGI  147 (256)
T ss_pred             cCCCeEEEEEecCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccc
Confidence            34667899999999999999997542 2347788777777666                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........       ......|++.|+| |+  ....+.++|||||||+++|++||+.||...                
T Consensus       148 ~~~~~~~~~-------~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~----------------  204 (256)
T cd08218         148 ARVLNSTVE-------LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAG----------------  204 (256)
T ss_pred             eeecCcchh-------hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCC----------------
Confidence            986644321       1223568888977 87  567889999999999999999999998642                


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       ...+.++..+.+.....+.          .....+.+++..|++.+|++||+|.||++
T Consensus       205 -~~~~~~~~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         205 -NMKNLVLKIIRGSYPPVSS----------HYSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             -CHHHHHHHHhcCCCCCCcc----------cCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence             1123333333332211111          11223446677999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.77  E-value=2e-18  Score=170.39  Aligned_cols=168  Identities=23%  Similarity=0.286  Sum_probs=121.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC------CcccCHHHHHHHHhhC------------------CCceeeCCCCCeee
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA------TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYV  447 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~------~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl  447 (614)
                      .++..++||||+++|+|.+++.....      ...++|..+.+++.++                  |+||++++++.+|+
T Consensus        67 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l  146 (262)
T cd00192          67 EEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKI  146 (262)
T ss_pred             CCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEE
Confidence            35678999999999999999986421      2568999998888877                  99999999999999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~  523 (614)
                      +|||.++........     .......+++.|+| |.  ...++.++||||+||+++||++ |+.||.....        
T Consensus       147 ~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--------  213 (262)
T cd00192         147 SDFGLSRDVYDDDYY-----RKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN--------  213 (262)
T ss_pred             ccccccccccccccc-----ccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH--------
Confidence            999999877654311     12234567888966 76  5578899999999999999999 6999875311        


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                               .+..+..........+          ......+.+++..|+..+|++|||+.|++..|+
T Consensus       214 ---------~~~~~~~~~~~~~~~~----------~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         214 ---------EEVLEYLRKGYRLPKP----------EYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             ---------HHHHHHHHcCCCCCCC----------ccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                     1111111111100001          011234556778999999999999999998873

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.77  E-value=1.6e-18  Score=177.14  Aligned_cols=111  Identities=20%  Similarity=0.308  Sum_probs=91.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|..+++..    .+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        72 ~~~~~~~lv~E~~~~~~L~~~~~~~----~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~  147 (324)
T cd05589          72 QTEDHVCFVMEYAAGGDLMMHIHTD----VFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGL  147 (324)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccC
Confidence            3456789999999999999998642    48888888877777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||++|||++|+.||..
T Consensus       148 ~~~~~~~~-------~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~  203 (324)
T cd05589         148 CKEGMGFG-------DRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPG  203 (324)
T ss_pred             CccCCCCC-------CcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCC
Confidence            87543221       12334679999977 87  56788999999999999999999999975

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.77  E-value=2.9e-19  Score=182.61  Aligned_cols=112  Identities=21%  Similarity=0.275  Sum_probs=90.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfG  451 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                   |+|||++.++.+||+|||
T Consensus        65 ~~~~~~~lv~E~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg  141 (325)
T cd05594          65 QTHDRLCFVMEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFG  141 (325)
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCC
Confidence            3456789999999999999998753   357787777766555                   999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++......       .......||+.|+| |+  ...++.++|||||||++|||+||+.||..
T Consensus       142 ~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~  198 (325)
T cd05594         142 LCKEGIKDG-------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN  198 (325)
T ss_pred             CCeecCCCC-------cccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCC
Confidence            987543221       11234679999977 87  66789999999999999999999999964

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.77  E-value=9.5e-19  Score=178.78  Aligned_cols=112  Identities=21%  Similarity=0.321  Sum_probs=91.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~E~~~~g~L~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~  147 (324)
T cd05587          71 QTMDRLYFVMEYVNGGDLMYHIQQV---GKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGM  147 (324)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCc
Confidence            3456789999999999999999753   247788777777666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||++|||+||+.||..
T Consensus       148 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~  203 (324)
T cd05587         148 CKENIFGG-------KTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDG  203 (324)
T ss_pred             ceecCCCC-------CceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCC
Confidence            87532221       11334679999977 87  56788999999999999999999999975

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.77  E-value=5.1e-19  Score=180.82  Aligned_cols=161  Identities=20%  Similarity=0.228  Sum_probs=114.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|..++...   ..+++.....++.++                  |+|||+++++.+||+|||+
T Consensus        66 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~  142 (325)
T cd05604          66 QTTEKLYFVLDFVNGGELFFHLQRE---RSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGL  142 (325)
T ss_pred             ecCCEEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCC
Confidence            3466789999999999999998743   357777777777666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||+++||++|+.||.....              
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--------------  201 (325)
T cd05604         143 CKEGIAQS-------DTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV--------------  201 (325)
T ss_pred             cccCCCCC-------CCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH--------------
Confidence            87543221       12334679999977 87  66788999999999999999999999974211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                         .+..+..+.......+.    ..       ..+.++...|++.+|.+||++++.+..
T Consensus       202 ---~~~~~~~~~~~~~~~~~----~~-------~~~~~ll~~ll~~~p~~R~~~~~~~~~  247 (325)
T cd05604         202 ---AEMYDNILHKPLVLRPG----AS-------LTAWSILEELLEKDRQRRLGAKEDFLE  247 (325)
T ss_pred             ---HHHHHHHHcCCccCCCC----CC-------HHHHHHHHHHhccCHHhcCCCCCCHHH
Confidence               12222222222111111    11       123345668899999999998754433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.77  E-value=7.6e-19  Score=180.75  Aligned_cols=181  Identities=19%  Similarity=0.172  Sum_probs=115.4

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++|||||+ |+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+++..
T Consensus        78 ~~~lv~e~~~-~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859          78 DIYVVFELME-SDLHQVIKAN---DDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             eEEEEEecCC-CCHHHHHHhc---ccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence            4799999996 6999998743   358888888887777                  99999999999999999999865


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--c--CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC--C
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL--P  529 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~--~  529 (614)
                      ......    ........||+.|+| |+  .  ..++.++|||||||+++||+||+.||......  ..........  +
T Consensus       154 ~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~--~~~~~~~~~~~~~  227 (338)
T cd07859         154 FNDTPT----AIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVV--HQLDLITDLLGTP  227 (338)
T ss_pred             ccccCc----cccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChH--HHHHHHHHHhCCC
Confidence            432211    011234679999977 86  2  57889999999999999999999999753211  1111111111  1


Q ss_pred             C-C-hHHHH----HHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 E-S-VMELV----YSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~-~-~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      . . ...+.    ...+.......+.   .........-..+.++...|++.+|++|||++|+++
T Consensus       228 ~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~  289 (338)
T cd07859         228 SPETISRVRNEKARRYLSSMRKKQPV---PFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALA  289 (338)
T ss_pred             CHHHHHHhhhhhHHHHHHhhcccCCC---chHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence            0 0 00000    0011110000000   001111111233457888999999999999999995

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.77  E-value=1.1e-18  Score=179.06  Aligned_cols=109  Identities=28%  Similarity=0.413  Sum_probs=91.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+|||++.++.+|++|||+
T Consensus       101 ~~~~~~~lv~Ey~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~  177 (340)
T PTZ00426        101 KDESYLYLVLEFVIGGEFFTFLRRN---KRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGF  177 (340)
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCC
Confidence            3456789999999999999999753   247787777776665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.....          .....||+.|+| |+  ...++.++|||||||++|||+||+.||..
T Consensus       178 a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~  230 (340)
T PTZ00426        178 AKVVDTR----------TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYA  230 (340)
T ss_pred             CeecCCC----------cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCC
Confidence            9865432          224679999977 87  56688999999999999999999999975

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.77  E-value=5.8e-19  Score=179.58  Aligned_cols=112  Identities=25%  Similarity=0.376  Sum_probs=90.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~E~~~~g~L~~~i~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~  142 (316)
T cd05620          66 QTKEHLFFVMEFLNGGDLMFHIQDK---GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGM  142 (316)
T ss_pred             EeCCEEEEEECCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCC
Confidence            3466789999999999999998753   247777776666655                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       .......||+.|+| |+  ...++.++||||+||+++||++|+.||..
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~  198 (316)
T cd05620         143 CKENVFGD-------NRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHG  198 (316)
T ss_pred             CeecccCC-------CceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCC
Confidence            87532221       12345679999977 87  56789999999999999999999999975

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.77  E-value=1e-18  Score=179.04  Aligned_cols=110  Identities=24%  Similarity=0.350  Sum_probs=87.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfG  451 (614)
                      ..+++.++||||+++|+|.+++...+   .+++.....++.++                   |+|||++.++.+|++|||
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg  149 (333)
T cd06650          73 YSDGEISICMEHMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFG  149 (333)
T ss_pred             EECCEEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCC
Confidence            34668899999999999999997532   35666555544433                   999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++......         .....||+.|+| |.  ...++.++|||||||++||+++|+.||..
T Consensus       150 ~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         150 VSGQLIDSM---------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             cchhhhhhc---------cccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            997654321         223578999977 87  56788999999999999999999999875

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.77  E-value=1.1e-18  Score=177.66  Aligned_cols=160  Identities=24%  Similarity=0.298  Sum_probs=114.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+||++++++.+||+|||+
T Consensus        66 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~  142 (318)
T cd05570          66 QTKDRLFFVMEYVNGGDLMFHIQRS---GRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGM  142 (318)
T ss_pred             EcCCEEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCC
Confidence            3456789999999999999998753   258888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||+++||+||+.||......             
T Consensus       143 ~~~~~~~~-------~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~-------------  202 (318)
T cd05570         143 CKEGILGG-------VTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDED-------------  202 (318)
T ss_pred             CeecCcCC-------CcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHH-------------
Confidence            87533221       12334679999977 87  667899999999999999999999999743211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCH-----HHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGV-----REMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm-----~ev~~  588 (614)
                          +.......... ..+.   .       ....+.++...|++.+|++||++     .+++.
T Consensus       203 ----~~~~~i~~~~~-~~~~---~-------~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         203 ----ELFQSILEDEV-RYPR---W-------LSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             ----HHHHHHHcCCC-CCCC---c-------CCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence                01111111110 0010   0       01123456679999999999999     77764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.77  E-value=1.1e-18  Score=178.63  Aligned_cols=112  Identities=22%  Similarity=0.325  Sum_probs=91.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~e~~~~g~L~~~~~~~---~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~  142 (329)
T cd05588          66 QTESRLFFVIEFVSGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGM  142 (329)
T ss_pred             EcCCEEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcc
Confidence            3456789999999999999998643   358888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||++|||+||+.||+.
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  198 (329)
T cd05588         143 CKEGIRPG-------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             ccccccCC-------CccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccc
Confidence            97532211       12334689999977 87  66788999999999999999999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.77  E-value=1.6e-18  Score=173.05  Aligned_cols=161  Identities=20%  Similarity=0.242  Sum_probs=115.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...    .+++.....++.++                  |+||++++++.+|++|||+
T Consensus        72 ~~~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~  147 (277)
T cd06642          72 LKGTKLWIIMEYLGGGSALDLLKPG----PLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGV  147 (277)
T ss_pred             ccCCceEEEEEccCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccc
Confidence            3456789999999999999998642    47788777777766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.+.....       ......|+..|+| |+  ...++.++|||||||+++|++||+.|+........  ..+      
T Consensus       148 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~--~~~------  212 (277)
T cd06642         148 AGQLTDTQI-------KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRV--LFL------  212 (277)
T ss_pred             cccccCcch-------hhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhH--Hhh------
Confidence            986654321       1223568889977 87  56778999999999999999999999864322110  000      


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                +........      .   ......+.++...|++.+|++||+|.||+..
T Consensus       213 ----------~~~~~~~~~------~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         213 ----------IPKNSPPTL------E---GQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             ----------hhcCCCCCC------C---cccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence                      000000000      0   0112334567789999999999999999973

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.77  E-value=1.8e-18  Score=170.49  Aligned_cols=163  Identities=25%  Similarity=0.380  Sum_probs=117.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++.... ...++|.....++.++                  |+||+++.++.+|++|||+++
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~  150 (256)
T cd05039          72 GNPLYIVTEYMAKGSLVDYLRSRG-RAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAK  150 (256)
T ss_pred             CCCeEEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEccccccc
Confidence            567899999999999999997542 2358898888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ......          ....++..|+| |+  ...++.++||||||++++|+++ |+.||......              
T Consensus       151 ~~~~~~----------~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--------------  206 (256)
T cd05039         151 EASQGQ----------DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--------------  206 (256)
T ss_pred             cccccc----------ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHH--------------
Confidence            764321          12334567865 76  5678889999999999999998 99998642111              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                         + +...+..........         .....+.+++.+|++.+|++||++.|++++|+.+
T Consensus       207 ---~-~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         207 ---D-VVPHVEKGYRMEAPE---------GCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             ---H-HHHHHhcCCCCCCcc---------CCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence               1 111111111100000         1123445677899999999999999999999753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=1.3e-18  Score=174.94  Aligned_cols=108  Identities=29%  Similarity=0.448  Sum_probs=89.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+|++|||++
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~  148 (291)
T cd05612          72 DQRFLYMLMEYVPGGELFSYLRNS---GRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFA  148 (291)
T ss_pred             cCCeEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcc
Confidence            456789999999999999999754   247777777766666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +.....          .....||+.|+| |.  ...++.++|||||||+++||+||+.||..
T Consensus       149 ~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~  200 (291)
T cd05612         149 KKLRDR----------TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFD  200 (291)
T ss_pred             hhccCC----------cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            866432          223579999977 87  56678999999999999999999999975

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.76  E-value=2.6e-18  Score=170.75  Aligned_cols=168  Identities=21%  Similarity=0.317  Sum_probs=120.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++...  ...++|..+..++.++                  |+||+++.++.+|++|||+++
T Consensus        78 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~  155 (270)
T cd05056          78 ENPVWIVMELAPLGELRSYLQVN--KYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSR  155 (270)
T ss_pred             CCCcEEEEEcCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceee
Confidence            34568999999999999999753  2358999888887766                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........      ..+...+++.|+| |.  ...++.++|||||||+++|+++ |+.||......  ..          
T Consensus       156 ~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~--~~----------  217 (270)
T cd05056         156 YLEDESYY------KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNN--DV----------  217 (270)
T ss_pred             ecccccce------ecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHH--HH----------
Confidence            76543211      1122345567866 76  5678899999999999999996 99999753221  11          


Q ss_pred             ChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          531 SVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                           ... +..... ..+.          .+...+.+++.+|+..+|++|||+.+++..|+.++..
T Consensus       218 -----~~~-~~~~~~~~~~~----------~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~  268 (270)
T cd05056         218 -----IGR-IENGERLPMPP----------NCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQE  268 (270)
T ss_pred             -----HHH-HHcCCcCCCCC----------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence                 111 111110 0010          1112344577799999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.76  E-value=2.2e-18  Score=170.29  Aligned_cols=166  Identities=27%  Similarity=0.372  Sum_probs=118.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++.... ...++|.++..++.++                  |+||++++++.++++|||+++
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          72 QEPIYIITEYMENGSLVDFLKTPE-GIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCccee
Confidence            355799999999999999987543 3468888888877766                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......      .......++..|+| |+  ...++.++|||||||+++|+++ |+.||......              
T Consensus       151 ~~~~~~~------~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--------------  210 (260)
T cd05067         151 LIEDNEY------TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNP--------------  210 (260)
T ss_pred             ecCCCCc------ccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChH--------------
Confidence            7653221      11223446678977 77  5678899999999999999999 99999743210              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                         +... .+.+........         .....+.+++.+|++.+|++||+++++...|+.
T Consensus       211 ---~~~~-~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         211 ---EVIQ-NLERGYRMPRPD---------NCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             ---HHHH-HHHcCCCCCCCC---------CCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence               1111 111111000000         011235567789999999999999999999874

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.76  E-value=3.2e-18  Score=169.11  Aligned_cols=165  Identities=25%  Similarity=0.359  Sum_probs=117.6

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++|+|.+++.... ...++|.++..++.++                  |+||+++.++.+|++|||.++.
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~  151 (260)
T cd05073          73 EPIYIITEFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARV  151 (260)
T ss_pred             CCeEEEEEeCCCCcHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceee
Confidence            45789999999999999997642 3457888888777766                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ......      .......++..|+| |+  ...++.++|||||||+++|++| |+.||.....  .....         
T Consensus       152 ~~~~~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~--~~~~~---------  214 (260)
T cd05073         152 IEDNEY------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN--PEVIR---------  214 (260)
T ss_pred             ccCCCc------ccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH--HHHHH---------
Confidence            643321      11223345677866 87  5678899999999999999999 8999864311  11111         


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                             .+.+.......         ......+.++..+|++.+|++||++.++.+.|+.
T Consensus       215 -------~~~~~~~~~~~---------~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         215 -------ALERGYRMPRP---------ENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             -------HHhCCCCCCCc---------ccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                   11111110000         0112234567789999999999999999999874

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.76  E-value=1.1e-18  Score=178.57  Aligned_cols=112  Identities=24%  Similarity=0.330  Sum_probs=92.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|..++...   ..+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~  142 (327)
T cd05617          66 QTTSRLFLVIEYVNGGDLMFHMQRQ---RKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGM  142 (327)
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEecccc
Confidence            3456789999999999999988643   358888888887776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |+  ...++.++|||||||+++||+||+.||+.
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~  198 (327)
T cd05617         143 CKEGLGPG-------DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI  198 (327)
T ss_pred             ceeccCCC-------CceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCc
Confidence            97533221       11334679999977 87  67788999999999999999999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.76  E-value=1e-18  Score=175.08  Aligned_cols=174  Identities=22%  Similarity=0.252  Sum_probs=118.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfG  451 (614)
                      ...+..++||||+++|+|.+++...   ..++|.....++.++                   |+||++++++.++++|||
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~g  149 (284)
T cd06620          73 LNENNICMCMEFMDCGSLDRIYKKG---GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFG  149 (284)
T ss_pred             ecCCEEEEEEecCCCCCHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCC
Confidence            3456789999999999999998753   247777776665544                   899999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++......         .....|+..|+| |+  ...++.++|||||||+++|++||+.||+.......      ....
T Consensus       150 l~~~~~~~~---------~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~------~~~~  214 (284)
T cd06620         150 VSGELINSI---------ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDD------GQDD  214 (284)
T ss_pred             cccchhhhc---------cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhh------hhhh
Confidence            987553221         223578999977 87  56788999999999999999999999975432110      0000


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                      +....+.+...+.... +....        .+....+.+++..|++.+|++|||+.||+++.-
T Consensus       215 ~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~  268 (284)
T cd06620         215 PMGILDLLQQIVQEPP-PRLPS--------SDFPEDLRDFVDACLLKDPTERPTPQQLCAMPP  268 (284)
T ss_pred             hhHHHHHHHHHhhccC-CCCCc--------hhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcc
Confidence            1111222222221111 00000        012234556777999999999999999998743

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.76  E-value=8.9e-19  Score=172.92  Aligned_cols=158  Identities=19%  Similarity=0.247  Sum_probs=110.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC--------e
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT--------A  445 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~--------~  445 (614)
                      .++..++||||+++|+|.++++..+  ..++|..+.+++.++                  |+||+++.+..        +
T Consensus        70 ~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~  147 (258)
T cd05078          70 CGDESIMVQEYVKFGSLDTYLKKNK--NLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFI  147 (258)
T ss_pred             eCCCcEEEEecCCCCcHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceE
Confidence            3466899999999999999998643  257888888887776                  99999988766        5


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCC-CCCCcccccCchH
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGK-RPTDEMFADCLSL  520 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~-~p~~~~~~~~~~l  520 (614)
                      |++|||++......           ....+++.|+| |+   ...++.++|||||||++||+++|. .|+.......  .
T Consensus       148 ~l~d~g~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~--~  214 (258)
T cd05078         148 KLSDPGISITVLPK-----------EILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQK--K  214 (258)
T ss_pred             EecccccccccCCc-----------hhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHH--H
Confidence            88999987654321           23567888977 87   245789999999999999999995 5554311100  0


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                                      ......... .|..          ....+.+++..|++.+|++|||++++++.|+
T Consensus       215 ----------------~~~~~~~~~-~~~~----------~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         215 ----------------LQFYEDRHQ-LPAP----------KWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             ----------------HHHHHcccc-CCCC----------CcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                            000000000 0000          0123456778999999999999999998863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.76  E-value=1.8e-18  Score=179.60  Aligned_cols=119  Identities=23%  Similarity=0.306  Sum_probs=92.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGl  147 (363)
T cd05628          71 QDKLNLYLIMEFLPGGDMMTLLMKK---DTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGL  147 (363)
T ss_pred             ecCCeEEEEEcCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccC
Confidence            3456789999999999999999753   357887777776666                  9999999999999999999


Q ss_pred             ccccCCCCCCC--------C--------------------CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHH
Q 046036          453 ARFLPTNVTNP--------M--------------------KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLL  501 (614)
Q Consensus       453 a~~~~~~~~~~--------~--------------------~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvll  501 (614)
                      ++.+.......        .                    .........+||+.|+| |.  ...++.++|||||||++|
T Consensus       148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~  227 (363)
T cd05628         148 CTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMY  227 (363)
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHH
Confidence            98654221000        0                    00001124689999977 87  667899999999999999


Q ss_pred             HHHhCCCCCCc
Q 046036          502 EIMTGKRPTDE  512 (614)
Q Consensus       502 ElltG~~p~~~  512 (614)
                      ||++|+.||..
T Consensus       228 ell~G~~Pf~~  238 (363)
T cd05628         228 EMLIGYPPFCS  238 (363)
T ss_pred             HHHhCCCCCCC
Confidence            99999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.76  E-value=1.2e-18  Score=178.20  Aligned_cols=112  Identities=21%  Similarity=0.277  Sum_probs=88.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++....   .+.......++.++                  |+|||++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~  142 (325)
T cd05602          66 QTADKLYFVLDYINGGELFYHLQRER---CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGL  142 (325)
T ss_pred             EcCCeEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCC
Confidence            34567899999999999999997532   35555555555554                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |+  ...++.++||||+||+++||++|+.||..
T Consensus       143 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  198 (325)
T cd05602         143 CKENIEHN-------GTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYS  198 (325)
T ss_pred             CcccccCC-------CCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCC
Confidence            97543221       12334679999977 87  66788999999999999999999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.76  E-value=1.8e-18  Score=176.57  Aligned_cols=112  Identities=21%  Similarity=0.339  Sum_probs=92.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++.+...++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~Ey~~~g~L~~~i~~~---~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~  147 (323)
T cd05615          71 QTVDRLYFVMEYVNGGDLMYHIQQV---GKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGM  147 (323)
T ss_pred             ecCCEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEecccc
Confidence            3456789999999999999999753   358888888888777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       .......||+.|+| |+  ...++.++|||||||+++||+||+.||..
T Consensus       148 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~  203 (323)
T cd05615         148 CKEHMVDG-------VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDG  203 (323)
T ss_pred             ccccCCCC-------ccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCC
Confidence            97543221       11234679999977 87  56788999999999999999999999975

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.76  E-value=1.7e-18  Score=177.15  Aligned_cols=109  Identities=24%  Similarity=0.332  Sum_probs=89.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...+   .+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        88 ~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~  164 (329)
T PTZ00263         88 QDENRVYFLLEFVVGGELFTHLRKAG---RFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGF  164 (329)
T ss_pred             EcCCEEEEEEcCCCCChHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccC
Confidence            34677899999999999999997532   46666665555544                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.....          .....||+.|+| |.  ...++.++|||||||++|||+||+.||..
T Consensus       165 ~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  217 (329)
T PTZ00263        165 AKKVPDR----------TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFD  217 (329)
T ss_pred             ceEcCCC----------cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCC
Confidence            9866432          223679999977 87  56678999999999999999999999964

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.76  E-value=2.2e-18  Score=169.80  Aligned_cols=164  Identities=20%  Similarity=0.237  Sum_probs=118.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++.... ...+++..+..++.++                  |+||++++++.+|++|||+
T Consensus        69 ~~~~~~~~~~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~  147 (256)
T cd08221          69 MDDNTLLIEMEYANGGTLYDKIVRQK-GQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGI  147 (256)
T ss_pred             ecCCeEEEEEEecCCCcHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcc
Confidence            34567899999999999999997642 3457888888777665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|++.|+| |+  ....+.++||||||++++||++|+.||+...               
T Consensus       148 ~~~~~~~~~-------~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~---------------  205 (256)
T cd08221         148 SKILGSEYS-------MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATN---------------  205 (256)
T ss_pred             eEEcccccc-------cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCC---------------
Confidence            987654321       1233568999966 76  5567889999999999999999999986421               


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                        ..+.+.....+.....+          ......+.++...|++.+|++||++.|+++.
T Consensus       206 --~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         206 --PLNLVVKIVQGNYTPVV----------SVYSSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             --HHHHHHHHHcCCCCCCc----------cccCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence              11222222222111111          0112234456678999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.76  E-value=2.3e-18  Score=169.75  Aligned_cols=164  Identities=22%  Similarity=0.372  Sum_probs=115.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .....++||||+++|+|.+++....  ..++|..+..++.++                  |+||+++.++.+|++|||++
T Consensus        70 ~~~~~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~  147 (256)
T cd05112          70 ERSPICLVFEFMEHGCLSDYLRAQR--GKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMT  147 (256)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcce
Confidence            3456799999999999999997542  247777777766655                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......      .......++.+|+| |+  ...++.++|||||||++||+++ |+.||......             
T Consensus       148 ~~~~~~~~------~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~-------------  208 (256)
T cd05112         148 RFVLDDQY------TSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNS-------------  208 (256)
T ss_pred             eecccCcc------cccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHH-------------
Confidence            76543211      11122335678966 77  5778899999999999999998 99998642211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                          +.++. +..........         .....+.+++.+|++.+|++||+|.||+++|
T Consensus       209 ----~~~~~-~~~~~~~~~~~---------~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         209 ----EVVET-INAGFRLYKPR---------LASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             ----HHHHH-HhCCCCCCCCC---------CCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence                11111 11111100000         0123456788999999999999999999887

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.76  E-value=3.8e-18  Score=170.52  Aligned_cols=169  Identities=21%  Similarity=0.257  Sum_probs=120.6

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++|+|.++++...  ..++|....+++.++                  |+||++++++.+|++|||+++.
T Consensus        81 ~~~~~v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~  158 (279)
T cd05057          81 SQVQLITQLMPLGCLLDYVRNHK--DNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (279)
T ss_pred             CceEEEEecCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCccccc
Confidence            56789999999999999997642  248888888888877                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......     .......++..|++ |.  ...++.++|||||||+++|++| |+.||+....                
T Consensus       159 ~~~~~~~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----------------  217 (279)
T cd05057         159 LDVDEKE-----YHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA----------------  217 (279)
T ss_pred             ccCcccc-----eecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH----------------
Confidence            6543221     11112234567866 76  5678899999999999999999 9999875321                


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                       .+..+..........+..          +...+.+++..|+..+|.+||++.++++.|+++...
T Consensus       218 -~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         218 -VEIPDLLEKGERLPQPPI----------CTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             -HHHHHHHhCCCCCCCCCC----------CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence             111111111111111110          112345677899999999999999999999987553

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.76  E-value=1.1e-18  Score=171.95  Aligned_cols=164  Identities=20%  Similarity=0.248  Sum_probs=116.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...++|.....++.++                  |+||++++++.+|++|||+
T Consensus        68 ~~~~~~~l~~e~~~~~~L~~~l~~~--~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~  145 (256)
T cd06612          68 FKNTDLWIVMEYCGAGSVSDIMKIT--NKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGV  145 (256)
T ss_pred             ecCCcEEEEEecCCCCcHHHHHHhC--ccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEccccc
Confidence            3456789999999999999999653  2458888888887776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........       ......|+..|+| |+  ...++.++|||||||+++||++|+.||..........         
T Consensus       146 ~~~~~~~~~-------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~---------  209 (256)
T cd06612         146 SGQLTDTMA-------KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIF---------  209 (256)
T ss_pred             chhcccCcc-------ccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhh---------
Confidence            987654321       1233558889977 87  5678899999999999999999999987532211000         


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .    +..........    ..   ..-..+.++...|++.+|++|||+.||+.
T Consensus       210 -----~----~~~~~~~~~~~----~~---~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         210 -----M----IPNKPPPTLSD----PE---KWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             -----h----hccCCCCCCCc----hh---hcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence                 0    00000000000    00   01123445667999999999999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.76  E-value=1.2e-18  Score=178.53  Aligned_cols=114  Identities=29%  Similarity=0.382  Sum_probs=90.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++....  ..+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~  148 (330)
T cd05601          71 QDKDNLYLVMEYQPGGDLLSLLNRYE--DQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGS  148 (330)
T ss_pred             ecCCeEEEEECCCCCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCC
Confidence            34567899999999999999997542  357777776666555                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c-------CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V-------ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~-------~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.+.....      .......||+.|+| |+ .       ..++.++|||||||++|||++|+.||..
T Consensus       149 a~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  211 (330)
T cd05601         149 AARLTANKM------VNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHE  211 (330)
T ss_pred             CeECCCCCc------eeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCC
Confidence            987654321      11233579999977 86 2       3567899999999999999999999975

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.76  E-value=1.6e-18  Score=173.90  Aligned_cols=187  Identities=17%  Similarity=0.145  Sum_probs=118.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++++|.++.+..   ..++|.....++.++                  |+||++++++.+|++|||+
T Consensus        70 ~~~~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~  146 (286)
T cd07846          70 RRKKRLYLVFEFVDHTVLDDLEKYP---NGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGF  146 (286)
T ss_pred             ccCCeEEEEEecCCccHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeee
Confidence            4566789999999999999887643   248899888888777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH--Hh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC--EM  526 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~--~~  526 (614)
                      ++.......       ......|+..|+| |+   ...++.++|||||||+++||++|+.||....... ......  ..
T Consensus       147 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~-~~~~~~~~~~  218 (286)
T cd07846         147 ARTLAAPGE-------VYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDID-QLYHIIKCLG  218 (286)
T ss_pred             eeeccCCcc-------ccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHH-HHHHHHHHhC
Confidence            986644321       1233567889966 86   3457889999999999999999999986432110 111100  00


Q ss_pred             hCCCChHHHHH--HHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVY--SRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .+.....+..+  +.+.....+..................+.+++..|++.+|++||+|.++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         219 NLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             CCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            11111111111  000000000000000000011122345667888999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=2.4e-18  Score=172.53  Aligned_cols=165  Identities=24%  Similarity=0.315  Sum_probs=116.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++.... ...+++.....++.++                  |+||++++++.++++|||+
T Consensus        70 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~  148 (285)
T cd05605          70 ETKDALCLVLTLMNGGDLKFHIYNMG-NPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGL  148 (285)
T ss_pred             cCCCeEEEEEeccCCCcHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCC
Confidence            44567899999999999999986532 3458888888777776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......        ......|++.|+| |+  ...++.++|||||||++||+++|+.||.......            
T Consensus       149 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~------------  208 (285)
T cd05605         149 AVEIPEGE--------TIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV------------  208 (285)
T ss_pred             ceecCCCC--------ccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh------------
Confidence            98754322        1223578999977 87  5678899999999999999999999997532110            


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~  588 (614)
                        ..+.+...+.......+   .       .....+.+++..|++.+|++||     ++++++.
T Consensus       209 --~~~~~~~~~~~~~~~~~---~-------~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         209 --KREEVERRVKEDQEEYS---E-------KFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             --HHHHHHHHhhhcccccC---c-------ccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence              00111111111100000   0       1112234677899999999999     7777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.76  E-value=2.9e-18  Score=178.20  Aligned_cols=112  Identities=21%  Similarity=0.348  Sum_probs=86.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.++++..    .++......++.++                  |+|||++.++.+||+|||+
T Consensus       113 ~~~~~~~lv~Ey~~gg~L~~~l~~~----~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~  188 (370)
T cd05596         113 QDDKYLYMVMEYMPGGDLVNLMSNY----DIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGT  188 (370)
T ss_pred             ecCCEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccc
Confidence            4466789999999999999999753    24444444444444                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--c----CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V----ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~----~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.......      ......+||+.|+| |.  .    ..++.++|||||||++|||++|+.||..
T Consensus       189 ~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~  249 (370)
T cd05596         189 CMKMDANGM------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA  249 (370)
T ss_pred             eeeccCCCc------ccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCC
Confidence            987643321      11234679999977 86  2    2478899999999999999999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.76  E-value=1.7e-18  Score=176.75  Aligned_cols=112  Identities=21%  Similarity=0.271  Sum_probs=89.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|..++...   ..+.......++.++                  |+||+++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~  142 (321)
T cd05603          66 QTAEKLYFVLDYVNGGELFFHLQRE---RCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGL  142 (321)
T ss_pred             EcCCEEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCC
Confidence            3456789999999999999988643   246666666666555                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |.  ...++.++|||||||++|||++|+.||..
T Consensus       143 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  198 (321)
T cd05603         143 CKEGVEPE-------ETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYS  198 (321)
T ss_pred             CccCCCCC-------CccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCC
Confidence            87532221       12334679999977 87  56788999999999999999999999964

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.76  E-value=1.6e-17  Score=164.25  Aligned_cols=192  Identities=19%  Similarity=0.173  Sum_probs=127.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC---------------------------CCceeeCCCCCe
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------------------PSNVLLDYDMTA  445 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i---------------------------~~NILld~~~~~  445 (614)
                      +.++.||+||.++|||.+||..+    .++|....+||..+                           +.|||+-.|+.+
T Consensus       280 ~~eywLVt~fh~kGsL~dyL~~n----tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTc  355 (534)
T KOG3653|consen  280 RMEYWLVTEFHPKGSLCDYLKAN----TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTC  355 (534)
T ss_pred             ccceeEEeeeccCCcHHHHHHhc----cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcE
Confidence            45789999999999999999865    48999888876655                           799999999999


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc-cCC-------CCccCceeehhHHHHHHHhCCCCCCccccc
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VAR-------YQHKGKGYSCGILLLEIMTGKRPTDEMFAD  516 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~-------~~~k~DVySfGvvllElltG~~p~~~~~~~  516 (614)
                      .|+|||+|..+......     ..+...+||..||| |+ .+.       .-.+.||||.|.|+|||+++-.-.+.....
T Consensus       356 cIaDFGLAl~~~p~~~~-----~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp  430 (534)
T KOG3653|consen  356 CIADFGLALRLEPGKPQ-----GDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVP  430 (534)
T ss_pred             EeeccceeEEecCCCCC-----cchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Confidence            99999999988755432     22445899999988 87 221       224689999999999999975544311011


Q ss_pred             CchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          517 CLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       517 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                      .-.+.--.+......+.++-+-.+.+..  .|.-+..+...  ..+..+-+..-.||..||+.|-|+.=|-+++.++...
T Consensus       431 ~Yqlpfe~evG~hPt~e~mq~~VV~kK~--RP~~p~~W~~h--~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~  506 (534)
T KOG3653|consen  431 EYQLPFEAEVGNHPTLEEMQELVVRKKQ--RPKIPDAWRKH--AGMAVLCETIEECWDHDAEARLTAGCVEERMAELMML  506 (534)
T ss_pred             cccCchhHHhcCCCCHHHHHHHHHhhcc--CCCChhhhhcC--ccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhcc
Confidence            1111100111111222222222222211  11112222221  4556666778899999999999999999999887755


Q ss_pred             h
Q 046036          597 L  597 (614)
Q Consensus       597 ~  597 (614)
                      .
T Consensus       507 ~  507 (534)
T KOG3653|consen  507 W  507 (534)
T ss_pred             C
Confidence            4

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.76  E-value=9e-19  Score=177.65  Aligned_cols=170  Identities=19%  Similarity=0.244  Sum_probs=127.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++|||.++-|.|.++|...+  ..|+...-..++.++                  ..|||+...--+|++|||++|
T Consensus       462 e~P~WivmEL~~~GELr~yLq~nk--~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR  539 (974)
T KOG4257|consen  462 EQPMWIVMELAPLGELREYLQQNK--DSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSR  539 (974)
T ss_pred             ccceeEEEecccchhHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhh
Confidence            566899999999999999998653  357777777777777                  799999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchH--HHHHHhhC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSL--HNFCEMAL  528 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l--~~~~~~~~  528 (614)
                      .+.++..+     . .+...-...||+ |-  ..+++.++|||-|||.+||+++ |.+||.+....+...  .+.-+...
T Consensus       540 ~~ed~~yY-----k-aS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~  613 (974)
T KOG4257|consen  540 YLEDDAYY-----K-ASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPC  613 (974)
T ss_pred             hccccchh-----h-ccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCC
Confidence            98876543     1 222333456766 65  7899999999999999999998 999998765433221  11112222


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                      |+                             .|...+.-++-.||+.+|.+||.+.|+...|..+.+.-..
T Consensus       614 P~-----------------------------nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~qeek~  655 (974)
T KOG4257|consen  614 PP-----------------------------NCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQEEKI  655 (974)
T ss_pred             CC-----------------------------CCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHHhhh
Confidence            22                             2333444566799999999999999999999988874333

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.75  E-value=1.8e-18  Score=170.43  Aligned_cols=164  Identities=18%  Similarity=0.207  Sum_probs=115.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++.... ...+++.....++.++                  |+||++++++.++++|||.
T Consensus        68 ~~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~  146 (255)
T cd08219          68 EADGHLYIVMEYCDGGDLMQKIKLQR-GKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGS  146 (255)
T ss_pred             EECCEEEEEEeeCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCc
Confidence            34567899999999999999986432 3346776666666655                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|++.|+| |+  ...++.++||||||++++||++|+.||.....              
T Consensus       147 ~~~~~~~~~-------~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~--------------  205 (255)
T cd08219         147 ARLLTSPGA-------YACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSW--------------  205 (255)
T ss_pred             ceeeccccc-------ccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCH--------------
Confidence            986644321       1223568888977 77  56688999999999999999999999974211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                         .............+.+.          .....+.++..+|++.+|++||++.|++..
T Consensus       206 ---~~~~~~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         206 ---KNLILKVCQGSYKPLPS----------HYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             ---HHHHHHHhcCCCCCCCc----------ccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence               11111111111111110          011123456678999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.75  E-value=2.7e-18  Score=171.36  Aligned_cols=160  Identities=21%  Similarity=0.277  Sum_probs=114.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+...++||||+++|+|.+++...    .+++.....++.++                  |+||+++.++.++++|||++
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~i~~~----~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~  148 (277)
T cd06640          73 KGTKLWIIMEYLGGGSALDLLRAG----PFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVA  148 (277)
T ss_pred             ECCEEEEEEecCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccc
Confidence            456789999999999999998642    36676666665554                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........       ......++..|+| |+  ....+.++|||||||+++||+||+.|+........            
T Consensus       149 ~~~~~~~~-------~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~------------  209 (277)
T cd06640         149 GQLTDTQI-------KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRV------------  209 (277)
T ss_pred             eeccCCcc-------ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhH------------
Confidence            87654321       1223568888976 87  56788999999999999999999999875322100            


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                           .. .+.....      +...   ......+.++...|++.+|++||++.+++..
T Consensus       210 -----~~-~~~~~~~------~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         210 -----LF-LIPKNNP------PTLT---GEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             -----hh-hhhcCCC------CCCc---hhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence                 00 0000000      0000   1223345577889999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.75  E-value=2.7e-18  Score=172.34  Aligned_cols=183  Identities=17%  Similarity=0.188  Sum_probs=116.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+++ +|.+++.... ...+++.....++.++                  |+||+++.++.+||+|||+++
T Consensus        79 ~~~~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~  156 (288)
T cd07863          79 ETKVTLVFEHVDQ-DLRTYLDKVP-PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLAR  156 (288)
T ss_pred             CceEEEEEccccc-CHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccc
Confidence            4557999999985 8999887542 3358888888877776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh-CCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA-LPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~-~~~  530 (614)
                      ......        ......||+.|+| |.  ...++.++||||+||+++||++|+.||....... .+....... .+.
T Consensus       157 ~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~-~~~~~~~~~~~~~  227 (288)
T cd07863         157 IYSCQM--------ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLIGLPP  227 (288)
T ss_pred             cccCcc--------cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHH-HHHHHHHHhCCCC
Confidence            765332        1234578999977 87  6678999999999999999999999986532211 111111110 000


Q ss_pred             ChHHHHHHHHhc-CcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQ-GVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .  +.....+.. .....+...........+....+.++...|++.||++|||+.|++.
T Consensus       228 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         228 E--DDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             h--hhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            0  000000000 0000000000001111112233456778999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.75  E-value=3e-18  Score=172.30  Aligned_cols=162  Identities=18%  Similarity=0.263  Sum_probs=113.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...    .+++.....++.++                  |+||++++++.+|++|||++
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~  165 (292)
T cd06658          90 VGDELWVVMEFLEGGALTDIVTHT----RMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFC  165 (292)
T ss_pred             cCCeEEEEEeCCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcch
Confidence            456789999999999999998542    47888888877766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........       ......|++.|+| |.  ...++.++|||||||+++|+++|+.||......  ....        
T Consensus       166 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~--~~~~--------  228 (292)
T cd06658         166 AQVSKEVP-------KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL--QAMR--------  228 (292)
T ss_pred             hhcccccc-------cCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHH--------
Confidence            76543221       1234578999977 87  567889999999999999999999998642110  0000        


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                              .+.............    ..+   .+..+...|+..+|.+|||+.|+++.
T Consensus       229 --------~~~~~~~~~~~~~~~----~~~---~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         229 --------RIRDNLPPRVKDSHK----VSS---VLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             --------HHHhcCCCccccccc----cCH---HHHHHHHHHccCChhHCcCHHHHhhC
Confidence                    011111100000000    112   22345557899999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=6.7e-19  Score=160.08  Aligned_cols=175  Identities=21%  Similarity=0.267  Sum_probs=124.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC--------------------CCceeeCCCCCeeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI--------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i--------------------~~NILld~~~~~kl~Df  450 (614)
                      ...+.|+|+.|...|||.+.+.... ++..++..+.++|..|+                    |+|||+.+.+.+++.||
T Consensus        94 ~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~  173 (302)
T KOG2345|consen   94 GKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDL  173 (302)
T ss_pred             CceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEec
Confidence            4677899999999999999998654 45579999999999888                    99999999999999999


Q ss_pred             ccccccCCCCCCCC--CCCcCcccccccccc-cccc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          451 GLARFLPTNVTNPM--KGQSNSAAVWGSIGY-NMEW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       451 Gla~~~~~~~~~~~--~~~~~~~~~~gt~~y-~aE~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      |-+......-....  ....-......|..| +||.     ....++++||||+||++|+|+.|..||+.....+..+.-
T Consensus       174 GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaL  253 (302)
T KOG2345|consen  174 GSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLAL  253 (302)
T ss_pred             cCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEE
Confidence            99986643211100  000001123457778 4586     567899999999999999999999999876554333211


Q ss_pred             H---HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          523 F---CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       523 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                      -   ....+|.                   +.+ .    .|   .+.++..+|++.||.+||++.+++..++.+
T Consensus       254 Av~n~q~s~P~-------------------~~~-y----se---~l~~lik~mlqvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  254 AVQNAQISIPN-------------------SSR-Y----SE---ALHQLIKSMLQVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             eeeccccccCC-------------------CCC-c----cH---HHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence            0   0111111                   100 1    12   334566799999999999999999988754

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.75  E-value=2.5e-18  Score=170.82  Aligned_cols=117  Identities=21%  Similarity=0.253  Sum_probs=86.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC--CcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA--TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~--~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      ...+..++||||+++|+|.+++.....  ....++.....++.++                  |+||++++++.+||+||
T Consensus        65 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~df  144 (269)
T cd05042          65 IESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDY  144 (269)
T ss_pred             CCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEecc
Confidence            345678999999999999999976432  2234566666666655                  99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc---------cCCCCccCceeehhHHHHHHHh-CCCCCCc
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---------VARYQHKGKGYSCGILLLEIMT-GKRPTDE  512 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---------~~~~~~k~DVySfGvvllEllt-G~~p~~~  512 (614)
                      |+++........     .......+++.|+| |+         ...++.++|||||||++|||++ |+.||..
T Consensus       145 g~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~  212 (269)
T cd05042         145 GLALEQYPEDYY-----ITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPD  212 (269)
T ss_pred             ccccccccchhe-----eccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCc
Confidence            998754332211     11123456677866 75         1356789999999999999999 7888864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.75  E-value=3.3e-18  Score=173.50  Aligned_cols=110  Identities=25%  Similarity=0.350  Sum_probs=88.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfG  451 (614)
                      ..+++.++||||+++|+|.++++..   ..+++.....++.++                   |.||+++.++.+|++|||
T Consensus        69 ~~~~~~~lv~ey~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg  145 (308)
T cd06615          69 YSDGEISICMEHMDGGSLDQVLKKA---GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFG  145 (308)
T ss_pred             eeCCEEEEEeeccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCC
Confidence            4467889999999999999999753   346777666666554                   899999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++......         .....|++.|+| |.  ...++.++|||||||+++|++||+.||..
T Consensus       146 ~~~~~~~~~---------~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~  200 (308)
T cd06615         146 VSGQLIDSM---------ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPP  200 (308)
T ss_pred             Ccccccccc---------cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence            987654321         223578899966 87  56688999999999999999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.75  E-value=1.2e-18  Score=177.47  Aligned_cols=112  Identities=21%  Similarity=0.315  Sum_probs=92.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+||++++++.+||+|||+
T Consensus        68 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~  144 (318)
T cd05582          68 QTEGKLYLILDFLRGGDLFTRLSKE---VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGL  144 (318)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccC
Confidence            3456789999999999999999753   357888888777776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.......       ......||+.|+| |.  ...++.++|||||||++|||+||+.||..
T Consensus       145 ~~~~~~~~~-------~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  200 (318)
T cd05582         145 SKESIDHEK-------KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQG  200 (318)
T ss_pred             CcccCCCCC-------ceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCC
Confidence            986543321       2334679999977 87  55678999999999999999999999975

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.75  E-value=2.4e-18  Score=170.83  Aligned_cols=117  Identities=22%  Similarity=0.273  Sum_probs=83.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC-CcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA-TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~-~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      ......++||||+++|+|.++++.... ....++.....++.++                  |+|||++.++.+|++|||
T Consensus        65 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg  144 (268)
T cd05086          65 VEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYG  144 (268)
T ss_pred             cCCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccc
Confidence            345678999999999999999975431 2335555555554444                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-ccc---------CCCCccCceeehhHHHHHHHhC-CCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWV---------ARYQHKGKGYSCGILLLEIMTG-KRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~~---------~~~~~k~DVySfGvvllElltG-~~p~~~  512 (614)
                      +++.......     ........|++.|+| |+.         ..++.++|||||||++|||+++ ..||..
T Consensus       145 ~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~  211 (268)
T cd05086         145 IGPSRYKEDY-----IETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSH  211 (268)
T ss_pred             cccccCcchh-----hhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCC
Confidence            9864322211     011234567888966 762         2357899999999999999974 667754

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=3.1e-19  Score=175.01  Aligned_cols=163  Identities=23%  Similarity=0.301  Sum_probs=112.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC--CcccCHHHHH------------HHHhhC-CCceeeCCCCCeeeccccccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA--TRRLDLAEGL------------KIAVDI-PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~--~~~l~~~~~~------------~ia~~i-~~NILld~~~~~kl~DfGla~~~  456 (614)
                      .+...+++||||.+|++.+.|.....  .....|..|-            +|-++| ++|||+..++.+|++|||++-++
T Consensus        82 ~g~~LwiiMey~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql  161 (467)
T KOG0201|consen   82 KGTKLWIIMEYCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQL  161 (467)
T ss_pred             ecccHHHHHHHhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeee
Confidence            35567899999999999999985431  1222332221            122233 99999999999999999999887


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCChH
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVM  533 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~~  533 (614)
                      .....       ...+.+|||.||| |+  ...|+.|+|+||+|++.+||.+|.+|+.+..+....      ..+|...+
T Consensus       162 ~~~~~-------rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvl------flIpk~~P  228 (467)
T KOG0201|consen  162 TNTVK-------RRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVL------FLIPKSAP  228 (467)
T ss_pred             echhh-------ccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEE------EeccCCCC
Confidence            66532       3456899999988 88  568999999999999999999999999865432110      01111111


Q ss_pred             HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          534 ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       534 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          |.+.+          .+...+.|-+       -.|+..+|+.||++.++++
T Consensus       229 ----P~L~~----------~~S~~~kEFV-------~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  229 ----PRLDG----------DFSPPFKEFV-------EACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             ----Ccccc----------ccCHHHHHHH-------HHHhhcCcccCcCHHHHhh
Confidence                11111          1222233433       3899999999999999885

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.75  E-value=3.4e-18  Score=172.00  Aligned_cols=163  Identities=19%  Similarity=0.161  Sum_probs=113.3

Q ss_pred             CceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +..++||||+++|+|.++++... ....++|..+..++.++                  |+||++++++.+||+|||+++
T Consensus        97 ~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~  176 (291)
T cd06639          97 GQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSA  176 (291)
T ss_pred             CeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccch
Confidence            45799999999999999886421 23458888888887776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cC-----CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-----RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-----~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      .......       ......|+..|+| |.  ..     .++.++|||||||+++||++|+.||...... ..+..+.  
T Consensus       177 ~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~-~~~~~~~--  246 (291)
T cd06639         177 QLTSTRL-------RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPV-KTLFKIP--  246 (291)
T ss_pred             hcccccc-------cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHH-HHHHHHh--
Confidence            6653321       1223568889966 76  11     3678999999999999999999998753211 0011110  


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                    ... .+.....       .+....+.+++..|++.+|++||++.|++.
T Consensus       247 --------------~~~-~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         247 --------------RNP-PPTLLHP-------EKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             --------------cCC-CCCCCcc-------cccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence                          000 0000000       011223556778999999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.75  E-value=3.5e-18  Score=176.72  Aligned_cols=119  Identities=22%  Similarity=0.331  Sum_probs=92.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~  147 (350)
T cd05573          71 QDEEHLYLVMEYMPGGDLMNLLIRK---DVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGL  147 (350)
T ss_pred             ecCCeEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCC
Confidence            4467789999999999999999754   357777777776666                  9999999999999999999


Q ss_pred             ccccCCCCCC----------------------CCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCC
Q 046036          453 ARFLPTNVTN----------------------PMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGK  507 (614)
Q Consensus       453 a~~~~~~~~~----------------------~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~  507 (614)
                      ++........                      ............||+.|+| |.  ...++.++|||||||+++||++|+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~  227 (350)
T cd05573         148 CKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGF  227 (350)
T ss_pred             CccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCC
Confidence            9876543200                      0000012234679999977 87  667899999999999999999999


Q ss_pred             CCCCc
Q 046036          508 RPTDE  512 (614)
Q Consensus       508 ~p~~~  512 (614)
                      .||..
T Consensus       228 ~Pf~~  232 (350)
T cd05573         228 PPFYS  232 (350)
T ss_pred             CCCCC
Confidence            99975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.75  E-value=4.8e-18  Score=170.05  Aligned_cols=163  Identities=15%  Similarity=0.169  Sum_probs=113.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|..+++..  ...++|..+..++.++                  |+||+++.++.+|++|||++
T Consensus        73 ~~~~~~~v~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~  150 (282)
T cd06643          73 YENNLWILIEFCAGGAVDAVMLEL--ERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVS  150 (282)
T ss_pred             eCCEEEEEEEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccc
Confidence            456789999999999999988753  2358888888887777                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      +......       .......|++.|+| |+       ...++.++|||||||++|||++|+.||......         
T Consensus       151 ~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~---------  214 (282)
T cd06643         151 AKNTRTI-------QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPM---------  214 (282)
T ss_pred             ccccccc-------cccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHH---------
Confidence            7654321       11233568899976 76       234677999999999999999999998642211         


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              +.+....... ......+..+       ...+.++...|++.+|++||++.++++
T Consensus       215 --------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         215 --------RVLLKIAKSE-PPTLAQPSRW-------SSEFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             --------HHHHHHhhcC-CCCCCCcccc-------CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                    0011111000 0000000001       123345677999999999999998874

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.75  E-value=2.3e-18  Score=173.04  Aligned_cols=159  Identities=23%  Similarity=0.228  Sum_probs=117.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +....+.++|.|||.+ +|+.+|...+   .++......|+.++                  |.||||+..+.+|+||||
T Consensus        70 fEt~~~~~vVte~a~g-~L~~il~~d~---~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg  145 (808)
T KOG0597|consen   70 FETSAHLWVVTEYAVG-DLFTILEQDG---KLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFG  145 (808)
T ss_pred             hcccceEEEEehhhhh-hHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhh
Confidence            4456788999999998 9999998643   58888888888777                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh-
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA-  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~-  527 (614)
                      +||.+..+.       +..+.+.|||-||| |.  .+.|+..+|.||+||++||+.+|++||...  ....+.+.+... 
T Consensus       146 ~Ar~m~~~t-------~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~--si~~Lv~~I~~d~  216 (808)
T KOG0597|consen  146 LARAMSTNT-------SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR--SITQLVKSILKDP  216 (808)
T ss_pred             hhhhcccCc-------eeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH--HHHHHHHHHhcCC
Confidence            999887653       45677899999988 87  788999999999999999999999999752  111222211111 


Q ss_pred             --CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHH
Q 046036          528 --LPESVMELVYSRLLQGVDKDAEDEPCMKAKIREC  561 (614)
Q Consensus       528 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  561 (614)
                        +|......+...+.+-..++|..|..|.+...+.
T Consensus       217 v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~Hp  252 (808)
T KOG0597|consen  217 VKPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGHP  252 (808)
T ss_pred             CCCcccccHHHHHHHHHHhhcChhhcccHHHHhcCh
Confidence              1222334444455555555666666665544443

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.75  E-value=1.9e-18  Score=172.25  Aligned_cols=160  Identities=19%  Similarity=0.289  Sum_probs=115.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+...++||||+++|+|.++++..    .+++.....++.++                  |+||++++++.++++|||++
T Consensus        70 ~~~~~~~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~  145 (274)
T cd06609          70 KGSKLWIIMEYCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVS  145 (274)
T ss_pred             ECCeEEEEEEeeCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccc
Confidence            346789999999999999999753    57888888877776                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.......       ......|++.|+| |+  ...++.++|||||||++||++||+.||......  .           
T Consensus       146 ~~~~~~~~-------~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~--~-----------  205 (274)
T cd06609         146 GQLTSTMS-------KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPM--R-----------  205 (274)
T ss_pred             eeeccccc-------ccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchH--H-----------
Confidence            87764321       1234568889976 87  556899999999999999999999999643211  0           


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          ... .+.....+..... .       ....+.++...|+..+|++||++++++.
T Consensus       206 ----~~~-~~~~~~~~~~~~~-~-------~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         206 ----VLF-LIPKNNPPSLEGN-K-------FSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             ----HHH-HhhhcCCCCCccc-c-------cCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence                000 0111111000000 0       1112345667899999999999999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.75  E-value=2e-18  Score=172.51  Aligned_cols=110  Identities=25%  Similarity=0.363  Sum_probs=90.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..++|.....++.++                  |+||++++++.+|++|||++
T Consensus        68 ~~~~~~lv~e~~~~~~L~~~i~~~---~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~  144 (279)
T cd05633          68 TPDKLCFILDLMNGGDLHYHLSQH---GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA  144 (279)
T ss_pred             cCCeEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcc
Confidence            456789999999999999998753   258898888887776                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .......         .....|++.|+| |.   ...++.++|||||||+++||++|+.||...
T Consensus       145 ~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  199 (279)
T cd05633         145 CDFSKKK---------PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (279)
T ss_pred             eeccccC---------ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCC
Confidence            7553321         123468999977 76   245789999999999999999999999753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.75  E-value=3.8e-18  Score=171.96  Aligned_cols=162  Identities=19%  Similarity=0.203  Sum_probs=114.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...    .++|.++..++.++                  |+||+++.++.+|++|||+
T Consensus        86 ~~~~~~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~  161 (296)
T cd06655          86 LVGDELFVVMEYLAGGSLTDVVTET----CMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGF  161 (296)
T ss_pred             ecCceEEEEEEecCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCcc
Confidence            3456789999999999999998642    48899888887766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|++.|+| |.  ...++.++|||||||++||+++|+.||........ ... .     
T Consensus       162 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~-~~~-~-----  227 (296)
T cd06655         162 CAQITPEQS-------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA-LYL-I-----  227 (296)
T ss_pred             chhcccccc-------cCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHH-H-----
Confidence            886654321       1223568899977 76  56688999999999999999999999975321100 000 0     


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                .... .+......       +....+.+++.+|+..+|++||++.+++.
T Consensus       228 ----------~~~~-~~~~~~~~-------~~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         228 ----------ATNG-TPELQNPE-------KLSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             ----------HhcC-CcccCCcc-------cCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence                      0000 00000000       11112335667999999999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.75  E-value=3.4e-18  Score=176.82  Aligned_cols=162  Identities=23%  Similarity=0.275  Sum_probs=106.4

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.+...       .++.....++.++                  |+|||+++++.+||+|||
T Consensus       141 ~~~~~~~~lv~e~~~~~~L~~~~~-------~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG  213 (353)
T PLN00034        141 FDHNGEIQVLLEFMDGGSLEGTHI-------ADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFG  213 (353)
T ss_pred             eccCCeEEEEEecCCCCccccccc-------CCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccc
Confidence            345677899999999999976532       2333444444444                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-c------CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      +++.+.....       ......||..|+| |+ .      ...+.++|||||||++|||++|+.||.......     |
T Consensus       214 ~~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~-----~  281 (353)
T PLN00034        214 VSRILAQTMD-------PCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGD-----W  281 (353)
T ss_pred             cceecccccc-------cccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCcc-----H
Confidence            9987653321       1234579999977 86 1      223468999999999999999999997321110     1


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                               ............   +....       ..-..+.++...|++.+|++||++.|+++.
T Consensus       282 ---------~~~~~~~~~~~~---~~~~~-------~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        282 ---------ASLMCAICMSQP---PEAPA-------TASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             ---------HHHHHHHhccCC---CCCCC-------ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                     111111111000   00000       111234456679999999999999999863

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.75  E-value=8.1e-19  Score=174.13  Aligned_cols=165  Identities=16%  Similarity=0.212  Sum_probs=112.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.++++..   ..+++..+..++.++                  |+||++++++.+|++|||++
T Consensus        77 ~~~~~~iv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~  153 (267)
T cd06646          77 SREKLWICMEYCGGGSLQDIYHVT---GPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVA  153 (267)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccc
Confidence            456789999999999999999743   247777777776666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +......       .......|++.|+| |.     ...++.++|||||||+++||++|+.|+......... ..+....
T Consensus       154 ~~~~~~~-------~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~-~~~~~~~  225 (267)
T cd06646         154 AKITATI-------AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRAL-FLMSKSN  225 (267)
T ss_pred             eeecccc-------cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhh-eeeecCC
Confidence            8664321       11233568889977 75     234678999999999999999999998643211000 0000000


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      +            .   .+......       .....+.++...|++.+|++||+++++++.
T Consensus       226 ~------------~---~~~~~~~~-------~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         226 F------------Q---PPKLKDKT-------KWSSTFHNFVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             C------------C---CCCCcccc-------ccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence            0            0   00000000       111234456679999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.75  E-value=3.3e-18  Score=172.67  Aligned_cols=185  Identities=21%  Similarity=0.144  Sum_probs=118.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+ +|+|.+++....  ..++|..+.+++.++                  |+||+++.++.+||+|||++
T Consensus        73 ~~~~~~lv~e~~-~~~L~~~i~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~  149 (298)
T cd07841          73 HKSNINLVFEFM-ETDLEKVIKDKS--IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLA  149 (298)
T ss_pred             cCCEEEEEEccc-CCCHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceee
Confidence            356789999999 999999997542  368999988888877                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......       ......+++.|+| |.   ...++.++|||||||+++|+++|..||...... ..+....+ ...
T Consensus       150 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~-~~~~~~~~-~~~  220 (298)
T cd07841         150 RSFGSPNR-------KMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDI-DQLGKIFE-ALG  220 (298)
T ss_pred             eeccCCCc-------cccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccH-HHHHHHHH-HcC
Confidence            87654321       1223456788976 76   346789999999999999999997777643211 11111111 110


Q ss_pred             CChHHHHHH--HHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYS--RLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .........  .+........................+.+++..|++.+|++|||+.||+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         221 TPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             CCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            000000000  00000000000000111111222345667888999999999999999987

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.74  E-value=5.4e-18  Score=167.58  Aligned_cols=167  Identities=24%  Similarity=0.336  Sum_probs=118.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+...++||||+++|+|.+++.... ...++|.++..++.++                  |+||++++++.+|++|||++
T Consensus        72 ~~~~~~~v~e~~~~~~L~~~i~~~~-~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~  150 (261)
T cd05034          72 EEEPIYIVTEYMSKGSLLDFLKSGE-GKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLA  150 (261)
T ss_pred             cCCceEEEEeccCCCCHHHHHhccc-cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccc
Confidence            3456899999999999999997642 3468998888887776                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.+.....      .......++..|+| |.  ...++.++|||||||+++|++| |+.||......             
T Consensus       151 ~~~~~~~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~-------------  211 (261)
T cd05034         151 RLIEDDEY------TAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNR-------------  211 (261)
T ss_pred             eeccchhh------hhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH-------------
Confidence            87653211      11112334567866 76  5678899999999999999999 99998642111             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                          +..+........+.+..          ....+.+++.+|++.+|++||++.++...|+.
T Consensus       212 ----~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         212 ----EVLEQVERGYRMPRPPN----------CPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             ----HHHHHHHcCCCCCCCCC----------CCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence                11111111100011111          12235567889999999999999999998874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.74  E-value=7.1e-18  Score=165.68  Aligned_cols=167  Identities=23%  Similarity=0.347  Sum_probs=115.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ......++||||+++|+|.+++....  ..+++.....++.++                  |+||+++.++.+|++|||+
T Consensus        62 ~~~~~~~~v~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~  139 (251)
T cd05041          62 VQKQPIYIVMELVPGGSLLTFLRKKK--NRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGM  139 (251)
T ss_pred             ecCCCeEEEEEcCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccc
Confidence            34567899999999999999997532  246777777766655                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++........     .......++..|+| |+  ...++.++|||||||+++|++| |..||......  ...       
T Consensus       140 ~~~~~~~~~~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~--~~~-------  205 (251)
T cd05041         140 SREEEGGIYT-----VSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQ--QTR-------  205 (251)
T ss_pred             cccccCCcce-----eccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHH--HHH-------
Confidence            9865432110     11112234567866 76  5678899999999999999999 88888643211  000       


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                               ..+.........+         .....+.+++..|+..+|++||++.||++.|+
T Consensus       206 ---------~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         206 ---------ERIESGYRMPAPQ---------LCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             ---------HHHhcCCCCCCCc---------cCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence                     1111110000000         11224556788999999999999999999885

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.74  E-value=4.2e-18  Score=170.59  Aligned_cols=186  Identities=18%  Similarity=0.166  Sum_probs=115.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||++ ++|.+++.... ...+++.....++.++                  |+||++++++.+|++|||+
T Consensus        69 ~~~~~~~~v~e~~~-~~l~~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~  146 (284)
T cd07860          69 HTENKLYLVFEFLH-QDLKKFMDASP-LSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGL  146 (284)
T ss_pred             ccCCcEEEEeeccc-cCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccc
Confidence            45667899999996 68999987542 3458888887777666                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......       ......+++.|+| |+   ...++.++|||||||+++||+||+.||....... ...+..+...
T Consensus       147 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~-~~~~~~~~~~  218 (284)
T cd07860         147 ARAFGVPVR-------TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTLG  218 (284)
T ss_pred             hhhcccCcc-------ccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHhC
Confidence            986543321       1233457888966 86   2346889999999999999999999986532211 1111111111


Q ss_pred             -CCC-hHHHHHH--HHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 -PES-VMELVYS--RLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 -~~~-~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       +.. ....+..  .........  .+..........-..+.++...|++.+|++||+|+|++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         219 TPDEVVWPGVTSLPDYKPSFPKW--ARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             CCChhhhhhhhHHHHHHhhcccc--cccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence             110 0000000  000000000  000000000011123446778999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.74  E-value=6.1e-18  Score=175.63  Aligned_cols=112  Identities=21%  Similarity=0.339  Sum_probs=89.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...    .+++.....++.++                  |+|||+++++.+||+|||+
T Consensus       113 ~~~~~~~lv~Ey~~gg~L~~~l~~~----~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~  188 (370)
T cd05621         113 QDDKYLYMVMEYMPGGDLVNLMSNY----DVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGT  188 (370)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEeccc
Confidence            3466789999999999999999643    36666666666555                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--c----CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V----ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~----~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.......      ......+||++|+| |.  .    ..++.++||||+||++|||+||+.||..
T Consensus       189 a~~~~~~~~------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~  249 (370)
T cd05621         189 CMKMDETGM------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYA  249 (370)
T ss_pred             ceecccCCc------eecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCC
Confidence            987643221      12234679999977 86  2    2378899999999999999999999975

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.74  E-value=4.2e-18  Score=169.61  Aligned_cols=159  Identities=19%  Similarity=0.196  Sum_probs=111.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-------C
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-------T  444 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-------~  444 (614)
                      +..+...++||||+++|+|..++...  ...+++..+.+++.++                  |+||++++.+       .
T Consensus        85 ~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~  162 (274)
T cd05076          85 CVRGSENIMVEEFVEHGPLDVCLRKE--KGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPF  162 (274)
T ss_pred             EEeCCceEEEEecCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccce
Confidence            33456789999999999999999753  2357888888888877                  9999998654       3


Q ss_pred             eeecccccccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHH-hCCCCCCcccccCch
Q 046036          445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIM-TGKRPTDEMFADCLS  519 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllEll-tG~~p~~~~~~~~~~  519 (614)
                      +|++|||+++.....           ....+++.|+| |+   ...++.++|||||||++||++ +|+.||.......  
T Consensus       163 ~kl~d~g~~~~~~~~-----------~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~--  229 (274)
T cd05076         163 IKLSDPGVSFTALSR-----------EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSE--  229 (274)
T ss_pred             eeecCCccccccccc-----------cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHH--
Confidence            799999998644321           12356777866 76   346789999999999999995 7899986432111  


Q ss_pred             HHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          520 LHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       520 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                      .            .....    .... .+..          ....+.+++..||+.+|++||+|.+|++.|
T Consensus       230 ~------------~~~~~----~~~~-~~~~----------~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         230 K------------ERFYE----KKHR-LPEP----------SCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             H------------HHHHH----hccC-CCCC----------CChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            0            01111    0000 0000          011345677899999999999999999877

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.74  E-value=2.2e-18  Score=173.07  Aligned_cols=112  Identities=19%  Similarity=0.284  Sum_probs=87.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++ +|.+++....  ..+++.....++.++                  |+|||+++++.+||+|||++
T Consensus        74 ~~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~  150 (288)
T cd07871          74 TERCLTLVFEYLDS-DLKQYLDNCG--NLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLA  150 (288)
T ss_pred             CCCeEEEEEeCCCc-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcce
Confidence            35578999999985 9999986532  346777777666665                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +.......       ......|++.|+| |.   ...++.++||||+||+++||+||+.||...
T Consensus       151 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~  207 (288)
T cd07871         151 RAKSVPTK-------TYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGS  207 (288)
T ss_pred             eeccCCCc-------cccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            76543221       1234578999977 86   346789999999999999999999999753

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.74  E-value=3.5e-18  Score=169.46  Aligned_cols=113  Identities=27%  Similarity=0.327  Sum_probs=88.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.+||+|||+++
T Consensus        78 ~~~~~l~~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~  154 (266)
T cd06651          78 EKTLTIFMEYMPGGSVKDQLKAY---GALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (266)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCcc
Confidence            35678999999999999999753   247777777776666                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .+......    ........|+.+|+| |+  ...++.++|||||||+++|++||+.||..
T Consensus       155 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~  211 (266)
T cd06651         155 RLQTICMS----GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAE  211 (266)
T ss_pred             cccccccc----CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccc
Confidence            65432110    011223568899977 87  56678999999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=2.1e-18  Score=176.68  Aligned_cols=112  Identities=23%  Similarity=0.300  Sum_probs=90.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        66 ~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~  142 (330)
T cd05586          66 QTDSDLYLVTDYMSGGELFWHLQKE---GRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGL  142 (330)
T ss_pred             ecCCeEEEEEcCCCCChHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCc
Confidence            3456789999999999999998753   357787777777666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |+   ...++.++|||||||++|||+||+.||..
T Consensus       143 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~  199 (330)
T cd05586         143 SKANLTDN-------KTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYA  199 (330)
T ss_pred             CcCCCCCC-------CCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCC
Confidence            97543322       11334679999977 86   23478999999999999999999999964

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.74  E-value=1.7e-18  Score=174.59  Aligned_cols=161  Identities=17%  Similarity=0.199  Sum_probs=113.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...    .+++..+.+++.++                  |+||+++.++.+|++|||++
T Consensus        87 ~~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~  162 (297)
T cd06656          87 VGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFC  162 (297)
T ss_pred             cCCEEEEeecccCCCCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccc
Confidence            456789999999999999998642    47787777776666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.......       ......|++.|+| |+  ...++.++|||||||+++|++||+.||............        
T Consensus       163 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~--------  227 (297)
T cd06656         163 AQITPEQS-------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLI--------  227 (297)
T ss_pred             eEccCCcc-------CcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeee--------
Confidence            76544321       1233568889966 77  566789999999999999999999999653211100000        


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                               .... .+......       .....+.++...|++.+|++||+|.+++.
T Consensus       228 ---------~~~~-~~~~~~~~-------~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         228 ---------ATNG-TPELQNPE-------RLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             ---------ccCC-CCCCCCcc-------ccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                     0000 00000000       01112335667999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.74  E-value=5.7e-18  Score=169.86  Aligned_cols=165  Identities=18%  Similarity=0.176  Sum_probs=112.3

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ++..++||||+++|+|.++++... ....+++.....++.++                  |+||++++++.+|++|||++
T Consensus        92 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~  171 (286)
T cd06638          92 GDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVS  171 (286)
T ss_pred             CCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCce
Confidence            456899999999999999886321 23457777766666555                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      +.......       ......|++.|+| |+       ...++.++|||||||++|||++|+.|+....... .+...  
T Consensus       172 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~-~~~~~--  241 (286)
T cd06638         172 AQLTSTRL-------RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMR-ALFKI--  241 (286)
T ss_pred             eecccCCC-------ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhH-HHhhc--
Confidence            86643321       1223568999976 76       1347889999999999999999999986532110 00000  


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                    .... ...... +.      ..-..+.+++.+|++.+|++|||+.||++.
T Consensus       242 --------------~~~~-~~~~~~-~~------~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         242 --------------PRNP-PPTLHQ-PE------LWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             --------------cccC-CCcccC-CC------CcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence                          0000 000000 00      001134467779999999999999999874

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.74  E-value=9.2e-18  Score=166.02  Aligned_cols=158  Identities=17%  Similarity=0.168  Sum_probs=111.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC-------e
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT-------A  445 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~-------~  445 (614)
                      ..+...++||||+++|+|..+++...  ..+++..+.+++.++                  |+|||++.++.       +
T Consensus        74 ~~~~~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~  151 (262)
T cd05077          74 VRDVENIMVEEFVEFGPLDLFMHRKS--DVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFI  151 (262)
T ss_pred             ecCCCCEEEEecccCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCcee
Confidence            34566799999999999999987532  358888888888777                  99999987654       8


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHH-hCCCCCCcccccCchH
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIM-TGKRPTDEMFADCLSL  520 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllEll-tG~~p~~~~~~~~~~l  520 (614)
                      |++|||++......           ....|+..|+| |+   ...++.++|||||||++|||+ +|+.|+.......   
T Consensus       152 ~l~d~g~~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~---  217 (262)
T cd05077         152 KLSDPGIPITVLSR-----------QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAE---  217 (262)
T ss_pred             EeCCCCCCccccCc-----------ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhH---
Confidence            99999998754322           22457888977 86   356889999999999999998 5888875421100   


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                                     .............           .....+.+++..|++.+|++||++.+++..+
T Consensus       218 ---------------~~~~~~~~~~~~~-----------~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         218 ---------------KERFYEGQCMLVT-----------PSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             ---------------HHHHHhcCccCCC-----------CChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence                           0000111110000           0012345677899999999999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.74  E-value=6e-18  Score=169.62  Aligned_cols=186  Identities=17%  Similarity=0.152  Sum_probs=118.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++++|..++...   ..++|..+..++.++                  |+||+++.++.+||+|||+
T Consensus        70 ~~~~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~  146 (286)
T cd07847          70 RRKRKLHLVFEYCDHTVLNELEKNP---RGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGF  146 (286)
T ss_pred             eeCCEEEEEEeccCccHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECcccc
Confidence            3456789999999999999887642   358898888888777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +........       ......++..|+| |+   ...++.++|||||||+++||+||+.||........ +..+. ...
T Consensus       147 ~~~~~~~~~-------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~-~~~~~-~~~  217 (286)
T cd07847         147 ARILTGPGD-------DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQ-LYLIR-KTL  217 (286)
T ss_pred             ceecCCCcc-------cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHH-HHh
Confidence            987654321       1223457788866 76   24578899999999999999999999975332111 11111 111


Q ss_pred             CCCh---HHHHHHH--HhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESV---MELVYSR--LLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~---~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....   .+..+..  ......+.+.............-..+.++...|++.+|++||++.|++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         218 GDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             CCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            0000   0000000  0000111111111111111112244567888999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.74  E-value=9.5e-18  Score=175.19  Aligned_cols=186  Identities=18%  Similarity=0.180  Sum_probs=122.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+. |+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||++
T Consensus       154 ~~~~~~lv~e~~~-~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a  229 (391)
T PHA03212        154 YNKFTCLILPRYK-TDLYCYLAAK---RNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAA  229 (391)
T ss_pred             ECCeeEEEEecCC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcc
Confidence            3567899999996 6999988753   357888888877766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCccccc------CchHHHHH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFAD------CLSLHNFC  524 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~------~~~l~~~~  524 (614)
                      +.......      .......||+.|+| |+  ...++.++|||||||++|||+||+.|+......      ...+....
T Consensus       230 ~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~  303 (391)
T PHA03212        230 CFPVDINA------NKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLII  303 (391)
T ss_pred             cccccccc------cccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHH
Confidence            75433211      12334689999976 87  567899999999999999999999886432110      11111111


Q ss_pred             Hhh------CCCChHHHHHH---HHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMA------LPESVMELVYS---RLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~------~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ...      ++......++.   .........+..++.+... .+....+.++..+|++.+|++|||+.|+++
T Consensus       304 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        304 RRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNL-YELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             HHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHH-hhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence            111      11111111111   1222223333344433321 223345667888999999999999999985

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.74  E-value=3.1e-18  Score=171.68  Aligned_cols=115  Identities=24%  Similarity=0.248  Sum_probs=90.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||++ |+|.+++........+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        69 ~~~~~~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~  147 (285)
T cd07861          69 MQESRLYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGL  147 (285)
T ss_pred             eeCCeEEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccc
Confidence            34677899999998 6999988754333568888887777776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++......       .......+++.|+| |.   ...++.++|||||||+++||+||+.||...
T Consensus       148 ~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~  205 (285)
T cd07861         148 ARAFGIPV-------RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGD  205 (285)
T ss_pred             eeecCCCc-------ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            97654321       11223467888976 86   335688999999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.74  E-value=5.7e-18  Score=170.24  Aligned_cols=123  Identities=22%  Similarity=0.325  Sum_probs=89.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHH-HHHHHhhC-----------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAE-GLKIAVDI-----------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~-~~~ia~~i-----------------~~NILld~~~~~kl~DfG  451 (614)
                      +++++..||||||+||||+...|...+   .|+... |.-||.-+                 |.|+|||..|++|++|||
T Consensus       210 FQD~~~LYLiMEylPGGD~mTLL~~~~---~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFG  286 (550)
T KOG0605|consen  210 FQDKEYLYLIMEYLPGGDMMTLLMRKD---TLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFG  286 (550)
T ss_pred             ecCCCeeEEEEEecCCccHHHHHHhcC---cCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeecccc
Confidence            567889999999999999999998653   243332 22222211                 999999999999999999


Q ss_pred             cccccCCCCC---------------C--C--CCC---Cc------------------Ccccccccccccc-cc--cCCCC
Q 046036          452 LARFLPTNVT---------------N--P--MKG---QS------------------NSAAVWGSIGYNM-EW--VARYQ  488 (614)
Q Consensus       452 la~~~~~~~~---------------~--~--~~~---~~------------------~~~~~~gt~~y~a-E~--~~~~~  488 (614)
                      +++.+.....               .  .  ...   ..                  -.-..+|||-||| |+  ...|+
T Consensus       287 Ls~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~  366 (550)
T KOG0605|consen  287 LSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYG  366 (550)
T ss_pred             ccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCC
Confidence            9965432100               0  0  000   00                  0113689999987 88  66799


Q ss_pred             ccCceeehhHHHHHHHhCCCCCCcccc
Q 046036          489 HKGKGYSCGILLLEIMTGKRPTDEMFA  515 (614)
Q Consensus       489 ~k~DVySfGvvllElltG~~p~~~~~~  515 (614)
                      ..+|.||+|||+|||+.|-+||....+
T Consensus       367 ~~cDwWSLG~ImyEmLvGyPPF~s~tp  393 (550)
T KOG0605|consen  367 KECDWWSLGCIMYEMLVGYPPFCSETP  393 (550)
T ss_pred             ccccHHHHHHHHHHHHhCCCCCCCCCH
Confidence            999999999999999999999987544

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.74  E-value=7.1e-18  Score=168.83  Aligned_cols=185  Identities=17%  Similarity=0.132  Sum_probs=118.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+ +|+|.+++.... ...++|..+..++.++                  |+||++++++.++++|||++
T Consensus        69 ~~~~~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~  146 (283)
T cd07830          69 ENDELYFVFEYM-EGNLYQLMKDRK-GKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLA  146 (283)
T ss_pred             cCCcEEEEEecC-CCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccc
Confidence            366789999999 889999987643 3468999888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCch--HHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLS--LHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~--l~~~~~~~  527 (614)
                      +.......        .....|+..|+| |+   ...++.++|||||||+++||++|+.||.........  ...+....
T Consensus       147 ~~~~~~~~--------~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~  218 (283)
T cd07830         147 REIRSRPP--------YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTP  218 (283)
T ss_pred             eeccCCCC--------cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCC
Confidence            86644321        223457888966 76   345789999999999999999999998653221110  00000000


Q ss_pred             CCCChHHH--HHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMEL--VYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ......+.  .+..+........  ..............+.+++..|++.+|++||++.|++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         219 TKQDWPEGYKLASKLGFRFPQFA--PTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             ChhhhhhHhhhhccccccccccc--cccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            00000000  0000100000000  00011111112345678889999999999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.74  E-value=1.1e-17  Score=174.70  Aligned_cols=120  Identities=21%  Similarity=0.301  Sum_probs=89.1

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++||||+++|+|.+++...+   .+++.....++.++                  |+|||++.++.+|++|||
T Consensus        70 ~~~~~~~~lv~E~~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFG  146 (381)
T cd05626          70 FQDKDNLYFVMDYIPGGDMMSLLIRME---VFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFG  146 (381)
T ss_pred             EecCCEEEEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCc
Confidence            345677899999999999999997532   46666665555554                  999999999999999999


Q ss_pred             cccccCCCCCC--------C--------------------------------CCCCcCcccccccccccc-cc--cCCCC
Q 046036          452 LARFLPTNVTN--------P--------------------------------MKGQSNSAAVWGSIGYNM-EW--VARYQ  488 (614)
Q Consensus       452 la~~~~~~~~~--------~--------------------------------~~~~~~~~~~~gt~~y~a-E~--~~~~~  488 (614)
                      +++.+......        .                                ..........+||+.|+| |.  ...++
T Consensus       147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~  226 (381)
T cd05626         147 LCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYT  226 (381)
T ss_pred             CCcccccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCC
Confidence            98643211000        0                                000001123579999977 87  56788


Q ss_pred             ccCceeehhHHHHHHHhCCCCCCc
Q 046036          489 HKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       489 ~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .++|||||||+++||+||+.||..
T Consensus       227 ~~~DiwSlG~il~elltG~~Pf~~  250 (381)
T cd05626         227 QLCDWWSVGVILFEMLVGQPPFLA  250 (381)
T ss_pred             CccceeehhhHHHHHHhCCCCCcC
Confidence            999999999999999999999975

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.74  E-value=7.3e-18  Score=169.99  Aligned_cols=163  Identities=18%  Similarity=0.233  Sum_probs=114.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++..    ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        88 ~~~~~~~iv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~  163 (297)
T cd06659          88 LVGEELWVLMEFLQGGALTDIVSQ----TRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGF  163 (297)
T ss_pred             eeCCeEEEEEecCCCCCHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechh
Confidence            345678999999999999998854    247888888777766                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|++.|+| |+  ...++.++|||||||+++||++|+.||......  .....      
T Consensus       164 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--~~~~~------  228 (297)
T cd06659         164 CAQISKDVP-------KRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV--QAMKR------  228 (297)
T ss_pred             Hhhcccccc-------cccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHH------
Confidence            976543321       1234678999977 87  567889999999999999999999998642111  00000      


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                +..............       ...+.++...|++.+|++||++.|++..
T Consensus       229 ----------~~~~~~~~~~~~~~~-------~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         229 ----------LRDSPPPKLKNAHKI-------SPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             ----------HhccCCCCccccCCC-------CHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence                      111000000000001       1123355668999999999999999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.74  E-value=8.8e-18  Score=168.37  Aligned_cols=113  Identities=26%  Similarity=0.373  Sum_probs=93.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++.... ...++|.....++.++                  |+||++++++.+|++|||+
T Consensus        70 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~  148 (285)
T cd05632          70 ETKDALCLVLTIMNGGDLKFHIYNMG-NPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGL  148 (285)
T ss_pred             ecCCEEEEEEEeccCccHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCc
Confidence            34567899999999999999987542 3458999988888777                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......        ......|+..|+| |+  ...++.++|||||||+++|++||+.||..
T Consensus       149 ~~~~~~~~--------~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~  203 (285)
T cd05632         149 AVKIPEGE--------SIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRG  203 (285)
T ss_pred             ceecCCCC--------cccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence            97654321        1234578999977 87  66788999999999999999999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=7.3e-18  Score=167.85  Aligned_cols=164  Identities=20%  Similarity=0.210  Sum_probs=113.6

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+..++||||+++|+|.+++.... ....+++..+..++.++                  |+||++++++.+|++|||++
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~  160 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS  160 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccc
Confidence            456899999999999999986532 23468888887777766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      ........       ......|++.|+| |+       ...++.++|||||||+++|++||+.||...... ..+.    
T Consensus       161 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~----  228 (275)
T cd06608         161 AQLDSTLG-------RRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPM-RALF----  228 (275)
T ss_pred             eecccchh-------hhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchH-HHHH----
Confidence            76543221       1234568889976 75       134678999999999999999999999642111 0010    


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                  ...... ...... +      .+....+.++..+|++.+|++|||+.|+++
T Consensus       229 ------------~~~~~~-~~~~~~-~------~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         229 ------------KIPRNP-PPTLKS-P------ENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             ------------HhhccC-CCCCCc-h------hhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence                        111100 000000 0      011223446777999999999999999975

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.74  E-value=6.7e-18  Score=168.98  Aligned_cols=162  Identities=20%  Similarity=0.192  Sum_probs=112.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++.... ...+++..+..++.++                  |+||++++++.++++|||+++
T Consensus        91 ~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~  169 (282)
T cd06636          91 DDQLWLVMEFCGAGSVTDLVKNTK-GNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  169 (282)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchh
Confidence            467899999999999999987532 2346777666666655                  899999999999999999987


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      .......       ......|++.|+| |.       ...++.++|||||||++|||+||+.||........ .      
T Consensus       170 ~~~~~~~-------~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~-~------  235 (282)
T cd06636         170 QLDRTVG-------RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRA-L------  235 (282)
T ss_pred             hhhcccc-------CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhh-h------
Confidence            6543211       1234678999977 76       23578899999999999999999999964321100 0      


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                ...... .......        ......+.++...|++.+|.+||++.|+++
T Consensus       236 ----------~~~~~~-~~~~~~~--------~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         236 ----------FLIPRN-PPPKLKS--------KKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             ----------hhHhhC-CCCCCcc--------cccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence                      000000 0000000        011224556777999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.73  E-value=8.9e-18  Score=183.88  Aligned_cols=174  Identities=22%  Similarity=0.266  Sum_probs=124.5

Q ss_pred             CCCCCCCceeEEecccCCCchhhhccCCC-------C----C--cccCHHHHHHHHhhC------------------CCc
Q 046036          388 MDSGGNDFKALAFEFMPNGSLESWLHPNE-------A----T--RRLDLAEGLKIAVDI------------------PSN  436 (614)
Q Consensus       388 ~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~-------~----~--~~l~~~~~~~ia~~i------------------~~N  436 (614)
                      +.|..++..++|.||+++|+|.++|+.++       .    .  ..+.-...+.++.||                  +.|
T Consensus       369 G~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRN  448 (609)
T KOG0200|consen  369 GACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARN  448 (609)
T ss_pred             eeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhh
Confidence            34555788999999999999999998654       0    0  126777777777777                  799


Q ss_pred             eeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccc--cccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCC
Q 046036          437 VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG--SIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPT  510 (614)
Q Consensus       437 ILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~g--t~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~  510 (614)
                      ||+.++..+||+|||+||.....+..      ......|  ...||| |-  ...++.|+|||||||+||||+| |..||
T Consensus       449 VLi~~~~~~kIaDFGlar~~~~~~~y------~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PY  522 (609)
T KOG0200|consen  449 VLITKNKVIKIADFGLARDHYNKDYY------RTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPY  522 (609)
T ss_pred             EEecCCCEEEEccccceeccCCCCce------EecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCC
Confidence            99999999999999999966554332      1111122  233677 65  5789999999999999999999 88898


Q ss_pred             CcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          511 DEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       511 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                      .+...                ..+. .+.+.++.....+         ..|..++..++..||+.+|++||+..|.++.+
T Consensus       523 p~~~~----------------~~~l-~~~l~~G~r~~~P---------~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~  576 (609)
T KOG0200|consen  523 PGIPP----------------TEEL-LEFLKEGNRMEQP---------EHCSDEIYDLMKSCWNADPEDRPTFSECVEFF  576 (609)
T ss_pred             CCCCc----------------HHHH-HHHHhcCCCCCCC---------CCCCHHHHHHHHHHhCCCcccCCCHHHHHHHH
Confidence            65211                1122 2233333221111         24455666889999999999999999999999


Q ss_pred             HHh
Q 046036          591 NVI  593 (614)
Q Consensus       591 ~~i  593 (614)
                      +..
T Consensus       577 ~~~  579 (609)
T KOG0200|consen  577 EKH  579 (609)
T ss_pred             HHH
Confidence            874

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.73  E-value=4.7e-18  Score=168.74  Aligned_cols=166  Identities=19%  Similarity=0.240  Sum_probs=110.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC-CCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY-DMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~-~~~~kl~DfG  451 (614)
                      ..++..++||||+++|+|.++++........++..+..++.++                  |+||+++. ++.+|++|||
T Consensus        75 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg  154 (268)
T cd06624          75 SENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFG  154 (268)
T ss_pred             ccCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecch
Confidence            3456789999999999999999754221112666666666555                  99999986 6789999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--c--CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ++........       ......|++.|+| |+  .  ..++.++|||||||++||+++|+.||.......  ...+.  
T Consensus       155 ~~~~~~~~~~-------~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~--~~~~~--  223 (268)
T cd06624         155 TSKRLAGINP-------CTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQ--AAMFK--  223 (268)
T ss_pred             hheecccCCC-------ccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChh--hhHhh--
Confidence            9976543221       1223457889966 87  2  347889999999999999999999986421110  00000  


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                 .......   +.    ..   ......+.+++.+|++.+|++||||.|++.
T Consensus       224 -----------~~~~~~~---~~----~~---~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         224 -----------VGMFKIH---PE----IP---ESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             -----------hhhhccC---CC----CC---cccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence                       0000000   00    00   011123445678999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=3.8e-18  Score=171.40  Aligned_cols=165  Identities=19%  Similarity=0.263  Sum_probs=111.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCH------HHHHHHHhhC-----------CCceeeCCCCCeeeccccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDL------AEGLKIAVDI-----------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~------~~~~~ia~~i-----------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+++.||||||=+- ||..+|..+. ....+|      .+.+..+.-|           |.|.|+-. |..|+.|||+|+
T Consensus       431 ~d~~lYmvmE~Gd~-DL~kiL~k~~-~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlVk-G~LKLIDFGIA~  507 (677)
T KOG0596|consen  431 TDGYLYMVMECGDI-DLNKILKKKK-SIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLVK-GRLKLIDFGIAN  507 (677)
T ss_pred             cCceEEEEeecccc-cHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEEe-eeEEeeeechhc
Confidence            47889999999888 9999998764 222333      3333333222           99998875 789999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-----c--------CCCCccCceeehhHHHHHHHhCCCCCCcccccCchH
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----V--------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL  520 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~--------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l  520 (614)
                      .+..+.+.     ......+||+.||+ |-     .        .+++.++||||+||+||+|+.|+.||.....     
T Consensus       508 aI~~DTTs-----I~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n-----  577 (677)
T KOG0596|consen  508 AIQPDTTS-----IVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIIN-----  577 (677)
T ss_pred             ccCccccc-----eeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHH-----
Confidence            98876543     23445799999988 64     1        1477899999999999999999999964211     


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       .|.+.      ..+.++.-.-.+...+..         .   .+++++..|++.||++||++.|+++
T Consensus       578 -~~aKl------~aI~~P~~~Iefp~~~~~---------~---~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  578 -QIAKL------HAITDPNHEIEFPDIPEN---------D---ELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             -HHHHH------HhhcCCCccccccCCCCc---------h---HHHHHHHHHHhcCcccCCCcHHHhc
Confidence             12111      111111100011111111         1   1667888999999999999999985

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.73  E-value=5.1e-18  Score=166.53  Aligned_cols=115  Identities=26%  Similarity=0.373  Sum_probs=99.4

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      .+..++..+||+..|.+|||.-+|...+ ...++..+..-+|.+|                  |.|||||++|+++|||.
T Consensus       253 AfeTkd~LClVLtlMNGGDLkfHiyn~g-~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDL  331 (591)
T KOG0986|consen  253 AFETKDALCLVLTLMNGGDLKFHIYNHG-NPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDL  331 (591)
T ss_pred             eecCCCceEEEEEeecCCceeEEeeccC-CCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeecc
Confidence            3567899999999999999999998775 3568888777777766                  99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      |+|-.+...+.        ....+||.|||| |+  ...|+...|.||+||++|||+.|+.||..
T Consensus       332 GLAvei~~g~~--------~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~  388 (591)
T KOG0986|consen  332 GLAVEIPEGKP--------IRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQ  388 (591)
T ss_pred             ceEEecCCCCc--------cccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhh
Confidence            99987776543        234699999988 87  67799999999999999999999999975

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.73  E-value=3.6e-18  Score=169.47  Aligned_cols=164  Identities=17%  Similarity=0.207  Sum_probs=112.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++.+...++.++                  |+||+++.++.+|++|||++
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~  153 (267)
T cd06645          77 RRDKLWICMEFCGGGSLQDIYHVT---GPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVS  153 (267)
T ss_pred             eCCEEEEEEeccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceee
Confidence            456789999999999999998743   247787777776666                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      .......       .......|++.|+| |+     ...++.++|||||||+++||++|+.||........ +...... 
T Consensus       154 ~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~-~~~~~~~-  224 (267)
T cd06645         154 AQITATI-------AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRA-LFLMTKS-  224 (267)
T ss_pred             eEccCcc-------cccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhh-HHhhhcc-
Confidence            7654321       11234578999977 76     23578899999999999999999999864321110 0000000 


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                    ....+.......+       ...+.++...|++.+|++||++.++++
T Consensus       225 --------------~~~~~~~~~~~~~-------~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         225 --------------NFQPPKLKDKMKW-------SNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             --------------CCCCCcccccCCC-------CHHHHHHHHHHccCCchhCcCHHHHhc
Confidence                          0000000000001       112345677899999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=8.8e-18  Score=166.21  Aligned_cols=166  Identities=21%  Similarity=0.259  Sum_probs=112.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++....+++.++                  |+||++++++.++++|||+
T Consensus        74 ~~~~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~  150 (263)
T cd06625          74 RDDETLSIFMEYMPGGSVKDQLKAY---GALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGA  150 (263)
T ss_pred             ccCCeEEEEEEECCCCcHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccc
Confidence            3456889999999999999998753   246666666665555                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++........    ........|+..|+| |+  ...++.++||||+||++||+++|+.||......             
T Consensus       151 ~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-------------  213 (263)
T cd06625         151 SKRLQTICSS----GTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAM-------------  213 (263)
T ss_pred             ceeccccccc----cccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchH-------------
Confidence            9765432110    011123568889977 87  566889999999999999999999998642110             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                          +...........  +.-..       ..-..+.++...|+..+|++|||++|++..
T Consensus       214 ----~~~~~~~~~~~~--~~~~~-------~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         214 ----AAIFKIATQPTN--PQLPS-------HVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             ----HHHHHHhccCCC--CCCCc-------cCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence                000000000000  00000       111223456679999999999999999863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.73  E-value=1.2e-17  Score=173.61  Aligned_cols=112  Identities=21%  Similarity=0.332  Sum_probs=87.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...    .++......++.++                  |+|||++.++.+||+|||+
T Consensus       113 ~~~~~~~lv~Ey~~gg~L~~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~  188 (371)
T cd05622         113 QDDRYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGT  188 (371)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCc
Confidence            3456789999999999999999753    25555555444444                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--c----CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V----ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~----~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.......      ......+||+.|+| |.  .    ..++.++|||||||++|||++|+.||..
T Consensus       189 a~~~~~~~~------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~  249 (371)
T cd05622         189 CMKMNKEGM------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA  249 (371)
T ss_pred             eeEcCcCCc------ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCC
Confidence            987653321      12234679999977 86  2    2378999999999999999999999975

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.73  E-value=5.2e-18  Score=164.31  Aligned_cols=119  Identities=20%  Similarity=0.280  Sum_probs=92.9

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCC-CcccCHHHHHHHHhhC--------------CCceeeCCCCCeeeccccccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEA-TRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~-~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++.-+..|.||||+.+|+|--+++.-+. ..+...-....||+++              -.||+||.++++||+|||+++
T Consensus       419 FQTmDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcK  498 (683)
T KOG0696|consen  419 FQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCK  498 (683)
T ss_pred             hhhhhheeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeeccccc
Confidence            4456778999999999999999875431 1223333445556655              699999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFA  515 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~  515 (614)
                      .--.+.       ..+.+.||||.|+| |.  ...|...+|.|||||+||||+.|+.||++..+
T Consensus       499 Eni~~~-------~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE  555 (683)
T KOG0696|consen  499 ENIFDG-------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE  555 (683)
T ss_pred             ccccCC-------cceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCH
Confidence            533222       23556999999977 87  78899999999999999999999999997543

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.73  E-value=1.2e-17  Score=155.73  Aligned_cols=115  Identities=20%  Similarity=0.263  Sum_probs=96.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC---CCCeeec
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY---DMTAYVG  448 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~---~~~~kl~  448 (614)
                      +.+....++|||+|++|.|++.+.+++ ...++..+...|+.+|                  |+|+|...   +...|++
T Consensus       128 ~~~rkcLLiVmE~meGGeLfsriq~~g-~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLt  206 (400)
T KOG0604|consen  128 YQGRKCLLIVMECMEGGELFSRIQDRG-DQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLT  206 (400)
T ss_pred             ccCceeeEeeeecccchHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEec
Confidence            445677899999999999999998764 5678888888888888                  99999964   4568999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |||+||.-...        ....+.|-||.|.| |+  ..+|+..+|+||.||++|-|++|.+||...
T Consensus       207 DfGFAK~t~~~--------~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~  266 (400)
T KOG0604|consen  207 DFGFAKETQEP--------GDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN  266 (400)
T ss_pred             ccccccccCCC--------ccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCccccc
Confidence            99999865432        23556788999966 87  668999999999999999999999999864

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.73  E-value=9.7e-18  Score=165.14  Aligned_cols=161  Identities=22%  Similarity=0.349  Sum_probs=114.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC-CCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD-MTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~-~~~kl~DfGl  452 (614)
                      .++..++||||+++|+|.+++.... ...+++..+.+++.++                  |+||+++++ ..+|++|||+
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~  148 (256)
T cd08220          70 EDKALMIVMEYAPGGTLAEYIQKRC-NSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGI  148 (256)
T ss_pred             cCCEEEEEEecCCCCCHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCC
Confidence            4567899999999999999997642 3357888888777666                  899999865 4689999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......        ......|+..|+| |.  ....+.++|||||||+++|+++|+.||.....              
T Consensus       149 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~--------------  206 (256)
T cd08220         149 SKILSSKS--------KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL--------------  206 (256)
T ss_pred             ceecCCCc--------cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch--------------
Confidence            98765432        1223568889976 77  55678899999999999999999999864211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         ...+...........+.          .....+.++...|++.+|++|||+.|++.
T Consensus       207 ---~~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         207 ---PALVLKIMSGTFAPISD----------RYSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             ---HHHHHHHHhcCCCCCCC----------CcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence               11111111111110000          01123446778999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.73  E-value=8.4e-18  Score=168.44  Aligned_cols=185  Identities=16%  Similarity=0.159  Sum_probs=114.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++|+||++ |+|.+++...  ...+++.....++.++                  |+||+++.++.+||+|||++
T Consensus        70 ~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~  146 (284)
T cd07839          70 SDKKLTLVFEYCD-QDLKKYFDSC--NGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLA  146 (284)
T ss_pred             cCCceEEEEecCC-CCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchh
Confidence            4567899999998 4888887643  2358888888877777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......       ......+++.|+| |+  . ..++.++|||||||+++||+||+.|+.........+....+...+
T Consensus       147 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~  219 (284)
T cd07839         147 RAFGIPVR-------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGT  219 (284)
T ss_pred             hccCCCCC-------CcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCC
Confidence            86543321       1233567888966 86  2 346889999999999999999999864322111111111111100


Q ss_pred             CChHHHHHHHHhcCcC----CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVD----KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..  +...+.+.....    ........+.+........+.++...|++.+|++|||++|++.
T Consensus       220 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         220 PT--EESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             CC--hHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            00  000011100000    0000001111111122234456788999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.73  E-value=7.2e-18  Score=168.70  Aligned_cols=180  Identities=16%  Similarity=0.127  Sum_probs=117.6

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||++ |+|.+++....  ..++|.++..++.++                  |+||+++. +.+||+|||+++.
T Consensus        73 ~~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~  148 (282)
T cd07831          73 GRLALVFELMD-MNLYELIKGRK--RPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRG  148 (282)
T ss_pred             CcEEEEEecCC-ccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccc
Confidence            67899999997 58888887532  358999988888877                  99999999 9999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ......        .....+++.|+| |+   ...++.++|||||||+++||++|+.||.....  .....+........
T Consensus       149 ~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~--~~~~~~~~~~~~~~  218 (282)
T cd07831         149 IYSKPP--------YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNE--LDQIAKIHDVLGTP  218 (282)
T ss_pred             cccCCC--------cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCH--HHHHHHHHHHcCCC
Confidence            643321        123457888966 85   35578899999999999999999999975322  11222222111111


Q ss_pred             hHHHHHHHHhcCcCC---CCC-CchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMELVYSRLLQGVDK---DAE-DEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..++ ..........   .+. ...............+.+++..|++.+|++||++.|++.
T Consensus       219 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         219 DAEV-LKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             CHHH-HHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            1111 1111111000   000 000111111223456677888999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.73  E-value=9.6e-18  Score=165.94  Aligned_cols=163  Identities=21%  Similarity=0.314  Sum_probs=114.0

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC-----------------------CCceeeCCCCCeeec
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI-----------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i-----------------------~~NILld~~~~~kl~  448 (614)
                      +...++||||+++|+|.+++.... ....+++.....++.++                       |+||+++.++.+|++
T Consensus        73 ~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~  152 (265)
T cd08217          73 NQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLG  152 (265)
T ss_pred             CCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEe
Confidence            345789999999999999996532 23457777666654433                       899999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++.......       ......|++.|+| |.  ...++.++|||||||+++||++|+.||.....  ..+.    
T Consensus       153 d~g~~~~~~~~~~-------~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~----  219 (265)
T cd08217         153 DFGLAKILGHDSS-------FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQ--LQLA----  219 (265)
T ss_pred             cccccccccCCcc-------cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCH--HHHH----
Confidence            9999987754321       1223568899977 77  56688999999999999999999999875221  0111    


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                  ..+.....+...         ......+.+++..|++.+|++||+|.||++.
T Consensus       220 ------------~~~~~~~~~~~~---------~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         220 ------------SKIKEGKFRRIP---------YRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             ------------HHHhcCCCCCCc---------cccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                        111111100000         0112344567789999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.73  E-value=6.5e-18  Score=168.69  Aligned_cols=111  Identities=26%  Similarity=0.364  Sum_probs=91.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..++|..+..++.++                  |+||++++++.+|++|||+
T Consensus        67 ~~~~~~~~v~e~~~g~~L~~~l~~~---~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~  143 (278)
T cd05606          67 HTPDKLSFILDLMNGGDLHYHLSQH---GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL  143 (278)
T ss_pred             ecCCEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcC
Confidence            3456789999999999999998643   358999998888877                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++......         .....|+..|+| |.   ...++.++|||||||+++||++|+.||...
T Consensus       144 ~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         144 ACDFSKKK---------PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             ccccCccC---------CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCC
Confidence            87554321         123468999976 87   235789999999999999999999999753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.73  E-value=5.9e-18  Score=169.62  Aligned_cols=113  Identities=27%  Similarity=0.416  Sum_probs=92.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++.... ...+++..+..++.++                  |+||++++++.++++|||+
T Consensus        70 ~~~~~~~lv~e~~~g~~L~~~l~~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~  148 (285)
T cd05630          70 ETKDALCLVLTLMNGGDLKFHIYHMG-EAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGL  148 (285)
T ss_pred             ecCCEEEEEEEecCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccc
Confidence            34567899999999999999986532 3358888888877766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +........        .....|+..|+| |.  ...++.++|||||||+++||++|+.||..
T Consensus       149 ~~~~~~~~~--------~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~  203 (285)
T cd05630         149 AVHVPEGQT--------IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQ  203 (285)
T ss_pred             eeecCCCcc--------ccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCC
Confidence            976543221        223578999977 87  66789999999999999999999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=1e-17  Score=167.17  Aligned_cols=161  Identities=21%  Similarity=0.242  Sum_probs=114.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...    .++|.....++.++                  |+||++++++.++++|||+
T Consensus        72 ~~~~~~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~  147 (277)
T cd06917          72 LKGPRLWIIMEYAEGGSVRTLMKAG----PIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGV  147 (277)
T ss_pred             eeCCEEEEEEecCCCCcHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCc
Confidence            3456789999999999999998642    57888877777766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +........       ......|+..|+| |+   ...++.++|||||||++|||++|+.||.......     +..   
T Consensus       148 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~-----~~~---  212 (277)
T cd06917         148 AALLNQNSS-------KRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFR-----AMM---  212 (277)
T ss_pred             eeecCCCcc-------ccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhh-----hhh---
Confidence            987654431       1233568889966 86   3456889999999999999999999997532110     000   


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                .+.....+....        ......+.+++..|++.+|++||++.|++.
T Consensus       213 ----------~~~~~~~~~~~~--------~~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         213 ----------LIPKSKPPRLED--------NGYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             ----------ccccCCCCCCCc--------ccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence                      000000000000        001224456777999999999999999986

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.73  E-value=1.5e-17  Score=167.34  Aligned_cols=163  Identities=18%  Similarity=0.226  Sum_probs=111.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|..++...  ...+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        80 ~~~~~~lv~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~  157 (292)
T cd06644          80 WDGKLWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVS  157 (292)
T ss_pred             eCCeEEEEEecCCCCcHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccc
Confidence            345789999999999999887643  2358888888877777                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-c------CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      .......       .......|++.|+| |+ .      ..++.++|||||||++|||++|+.||......         
T Consensus       158 ~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~---------  221 (292)
T cd06644         158 AKNVKTL-------QRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM---------  221 (292)
T ss_pred             eeccccc-------cccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHH---------
Confidence            7543321       11233568888966 76 1      23577899999999999999999998642211         


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              +...... ....+......       .....+.++...|++.+|++||++.|+++
T Consensus       222 --------~~~~~~~-~~~~~~~~~~~-------~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         222 --------RVLLKIA-KSEPPTLSQPS-------KWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             --------HHHHHHh-cCCCccCCCCc-------ccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                    0011111 11000000000       11123445677899999999999999975

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.73  E-value=5.4e-18  Score=176.65  Aligned_cols=182  Identities=16%  Similarity=0.167  Sum_probs=114.9

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++||||+. ++|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+++..
T Consensus        78 ~~~lv~e~~~-~~l~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~  153 (372)
T cd07853          78 EIYVVTELMQ-SDLHKIIVSP---QPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVE  153 (372)
T ss_pred             eEEEEeeccc-cCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeec
Confidence            5799999998 5888888643   358888887777766                  99999999999999999999875


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      .....      .......+|+.|+| |+   ...++.++|||||||+++||++|+.||....... .+.......-....
T Consensus       154 ~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~g~~~~  226 (372)
T cd07853         154 EPDES------KHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQ-QLDLITDLLGTPSL  226 (372)
T ss_pred             ccCcc------ccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHcCCCCH
Confidence            43321      12233568899977 87   2457899999999999999999999997532211 11111111100111


Q ss_pred             H------HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          533 M------ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       533 ~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .      +.....+..... .+...........+....+.+++..|++.+|++|||+.|++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  287 (372)
T cd07853         227 EAMRSACEGARAHILRGPH-KPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA  287 (372)
T ss_pred             HHHHHhhHHHHHHHHhCCC-CCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence            0      011111111110 010000000000111234557888999999999999999986

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.73  E-value=9.7e-18  Score=169.67  Aligned_cols=113  Identities=18%  Similarity=0.254  Sum_probs=87.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||++ |+|.+++...  ...+++.....++.++                  |+||++++++.+||+|||+
T Consensus        73 ~~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~  149 (303)
T cd07869          73 HTKETLTLVFEYVH-TDLCQYMDKH--PGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGL  149 (303)
T ss_pred             ecCCeEEEEEECCC-cCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCc
Confidence            34567899999996 5888887643  2346777777776666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++......       .......||+.|+| |.   ...++.++||||+||+++||+||+.||...
T Consensus       150 ~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  207 (303)
T cd07869         150 ARAKSVPS-------HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGM  207 (303)
T ss_pred             ceeccCCC-------ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            97543321       11234578999977 86   345788999999999999999999999754

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=1.1e-17  Score=165.35  Aligned_cols=162  Identities=20%  Similarity=0.226  Sum_probs=112.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++....+++.++                  |+||++++++.+|++|||+
T Consensus        67 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~  143 (260)
T cd05611          67 QSKDYLYLVMEYLNGGDCASLIKTL---GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGL  143 (260)
T ss_pred             EcCCeEEEEEeccCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeeccc
Confidence            3456789999999999999999753   246777777777776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.....           ....|++.|++ |+  ...++.++|||||||+++|++||+.||......             
T Consensus       144 ~~~~~~~-----------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-------------  199 (260)
T cd05611         144 SRNGLEN-----------KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPD-------------  199 (260)
T ss_pred             ceecccc-----------ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHH-------------
Confidence            8754321           12457888966 76  455789999999999999999999999643211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                          +.............+...       ......+.+++..|++.+|++||++.++.+.|
T Consensus       200 ----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l  249 (260)
T cd05611         200 ----AVFDNILSRRINWPEEVK-------EFCSPEAVDLINRLLCMDPAKRLGANGYQEIK  249 (260)
T ss_pred             ----HHHHHHHhcccCCCCccc-------ccCCHHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence                111111111111000000       01123345677899999999999876665443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.72  E-value=5.7e-18  Score=187.39  Aligned_cols=181  Identities=19%  Similarity=0.224  Sum_probs=118.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC--------CCcccCHHHHHHHHhhC------------------CCceeeCCCCC
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE--------ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT  444 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~--------~~~~l~~~~~~~ia~~i------------------~~NILld~~~~  444 (614)
                      ..++..++||||+++|+|.+++....        ....+++...++++.++                  |+||+++.++.
T Consensus        72 ~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~  151 (932)
T PRK13184         72 SDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGE  151 (932)
T ss_pred             eeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCC
Confidence            34567899999999999999986321        12346677777776666                  99999999999


Q ss_pred             eeecccccccccCCCCCCCC-----------CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCC
Q 046036          445 AYVGDFGLARFLPTNVTNPM-----------KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPT  510 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~-----------~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~  510 (614)
                      +|++|||+++..........           .........+||+.|+| |.  ...++.++|||||||+++||+||+.||
T Consensus       152 vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF  231 (932)
T PRK13184        152 VVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPY  231 (932)
T ss_pred             EEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCC
Confidence            99999999987632111000           00011223579999977 87  667899999999999999999999999


Q ss_pred             CcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCC-CCHHHHHHH
Q 046036          511 DEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNER-MGVREMVME  589 (614)
Q Consensus       511 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~R-Psm~ev~~~  589 (614)
                      ........  ..              ...+.......+         ..+....+.+++.+|++.+|++| +++.++.+.
T Consensus       232 ~~~~~~ki--~~--------------~~~i~~P~~~~p---------~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~  286 (932)
T PRK13184        232 RRKKGRKI--SY--------------RDVILSPIEVAP---------YREIPPFLSQIAMKALAVDPAERYSSVQELKQD  286 (932)
T ss_pred             CCcchhhh--hh--------------hhhccChhhccc---------cccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            75221110  00              000000000000         01112234467789999999999 567777777


Q ss_pred             HHHhHHH
Q 046036          590 MNVIKEV  596 (614)
Q Consensus       590 L~~i~~~  596 (614)
                      |+...+.
T Consensus       287 Le~~lq~  293 (932)
T PRK13184        287 LEPHLQG  293 (932)
T ss_pred             HHHHHhc
Confidence            7766543

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.72  E-value=1.7e-17  Score=163.68  Aligned_cols=155  Identities=19%  Similarity=0.235  Sum_probs=110.9

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-------Ceeec
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-------TAYVG  448 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-------~~kl~  448 (614)
                      +..++||||+++|+|.+++....  ..+++..+..++.++                  |+||+++.++       .+|++
T Consensus        73 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~  150 (259)
T cd05037          73 DENIMVEEYVKFGPLDVFLHREK--NNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLS  150 (259)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeC
Confidence            45689999999999999998542  258888888887776                  9999999888       79999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cC--CCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA--RYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHN  522 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~--~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~  522 (614)
                      |||+++.....           ....++..|+| |+  ..  .++.++|||||||++||+++ |..|+......  ....
T Consensus       151 Dfg~a~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~--~~~~  217 (259)
T cd05037         151 DPGIPITVLSR-----------EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSS--EKER  217 (259)
T ss_pred             CCCcccccccc-----------cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCch--hHHH
Confidence            99999865432           12346667866 87  23  68899999999999999999 56677543111  0000


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                      +..               ....  .+..  .        ...+.+++..|+..+|++|||+.||++.|
T Consensus       218 ~~~---------------~~~~--~~~~--~--------~~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         218 FYQ---------------DQHR--LPMP--D--------CAELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             HHh---------------cCCC--CCCC--C--------chHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            000               0000  0000  0        03455778899999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.72  E-value=2.1e-17  Score=164.48  Aligned_cols=166  Identities=21%  Similarity=0.334  Sum_probs=115.3

Q ss_pred             eeEEecccCCCchhhhccCCC---CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          396 KALAFEFMPNGSLESWLHPNE---ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~---~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .++|+||+++|+|.+++....   ....+++....+++.++                  |+||+++.++.+|++|||+++
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~~  161 (273)
T cd05074          82 PMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSK  161 (273)
T ss_pred             eEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcccccc
Confidence            478999999999998875321   22357888888877777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........     .......+++.|++ |.  ...++.++|||||||++|||++ |+.||......  .+..+.      
T Consensus       162 ~~~~~~~~-----~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~--~~~~~~------  228 (273)
T cd05074         162 KIYSGDYY-----RQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENS--EIYNYL------  228 (273)
T ss_pred             cccCCcce-----ecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHH--HHHHHH------
Confidence            66433211     11122345567765 76  5667889999999999999999 88888643211  111111      


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                               ........+          ......+.+++.+|++.+|++||++.|+++.|+++
T Consensus       229 ---------~~~~~~~~~----------~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         229 ---------IKGNRLKQP----------PDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             ---------HcCCcCCCC----------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                     110000000          01223566788899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.72  E-value=1.2e-17  Score=166.88  Aligned_cols=163  Identities=20%  Similarity=0.273  Sum_probs=109.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|..+.       .+++.....++.++                  |+||+++.++.+||+|||++
T Consensus        70 ~~~~~~lv~e~~~~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~  142 (279)
T cd06619          70 VENRISICTEFMDGGSLDVYR-------KIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVS  142 (279)
T ss_pred             ECCEEEEEEecCCCCChHHhh-------cCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcc
Confidence            356678999999999997653       24566555665555                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......         .....||..|+| |+  ...++.++|||||||++|||++|+.||..........       .  
T Consensus       143 ~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~-------~--  204 (279)
T cd06619         143 TQLVNSI---------AKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSL-------M--  204 (279)
T ss_pred             eeccccc---------ccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhccccccc-------c--
Confidence            8654321         233578999966 87  5678899999999999999999999997532211100       0  


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                       ..+.............+..         .....+.+++..|++.+|++||+++|++..
T Consensus       205 -~~~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         205 -PLQLLQCIVDEDPPVLPVG---------QFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             -hHHHHHHHhccCCCCCCCC---------cCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence             0011111110000000000         011234466778999999999999999864

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.72  E-value=1e-17  Score=168.18  Aligned_cols=168  Identities=21%  Similarity=0.220  Sum_probs=114.1

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+..++||||+++|+|.+++.... ....+++.....++.++                  |.||+++.++.++++|||++
T Consensus        73 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~  152 (287)
T cd06621          73 SSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVS  152 (287)
T ss_pred             CCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccc
Confidence            345799999999999998875321 23457777777777766                  89999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCccccc---CchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFAD---CLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~---~~~l~~~~~~~  527 (614)
                      .......         .....++..|+| |.  ...++.++||||+||++|||++|+.||+.....   ......+....
T Consensus       153 ~~~~~~~---------~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~  223 (287)
T cd06621         153 GELVNSL---------AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNM  223 (287)
T ss_pred             ccccccc---------cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcC
Confidence            7654321         123457888966 76  567889999999999999999999999754211   01111111100


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..        +.+    ...+.....       ....+.++...|++.+|++||||.||++
T Consensus       224 ~~--------~~~----~~~~~~~~~-------~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         224 PN--------PEL----KDEPGNGIK-------WSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             Cc--------hhh----ccCCCCCCc-------hHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            00        000    000000001       1223557888999999999999999986

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.72  E-value=1.3e-17  Score=151.28  Aligned_cols=164  Identities=20%  Similarity=0.261  Sum_probs=118.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC---CCeeec
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD---MTAYVG  448 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~---~~~kl~  448 (614)
                      +.+..+.|+|+|+|.+|+|..-+-.+   ..++....-..+.||                  |.|+||..+   --+|++
T Consensus        79 i~~~~~~ylvFe~m~G~dl~~eIV~R---~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~  155 (355)
T KOG0033|consen   79 IQEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLA  155 (355)
T ss_pred             hcccceeEEEEecccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeec
Confidence            34577899999999999998766432   234444444444444                  999999654   347999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+|..+...        ...-..+|||+||+ |+  ..+++..+|||+.||||+-++.|..||.+...          
T Consensus       156 ~FGvAi~l~~g--------~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~----------  217 (355)
T KOG0033|consen  156 DFGLAIEVNDG--------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ----------  217 (355)
T ss_pred             ccceEEEeCCc--------cccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccH----------
Confidence            99999988733        33557899999977 87  67899999999999999999999999976321          


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             .+.....+.+..+.+++..+...+...+.+.       +++..||.+|.|+.|+++
T Consensus       218 -------~rlye~I~~g~yd~~~~~w~~is~~Ak~Lvr-------rML~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  218 -------HRLYEQIKAGAYDYPSPEWDTVTPEAKSLIR-------RMLTVNPKKRITADEALK  266 (355)
T ss_pred             -------HHHHHHHhccccCCCCcccCcCCHHHHHHHH-------HHhccChhhhccHHHHhC
Confidence                   2334445556666555555555555555444       345679999999888774

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.72  E-value=1.3e-17  Score=164.84  Aligned_cols=164  Identities=17%  Similarity=0.212  Sum_probs=114.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...  ...+++.....++.++                  |+||++++++.+|++|||++
T Consensus        71 ~~~~~~l~~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~  148 (262)
T cd06613          71 RRDKLWIVMEYCGGGSLQDIYQVT--RGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVS  148 (262)
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccc
Confidence            356789999999999999998753  1357777777776666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cC---CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA---RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~---~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      .......       .......|+..|+| |.  ..   .++.++|||||||+++||+||+.||........         
T Consensus       149 ~~~~~~~-------~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~---------  212 (262)
T cd06613         149 AQLTATI-------AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRA---------  212 (262)
T ss_pred             hhhhhhh-------hccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH---------
Confidence            7654321       11233568888966 76  34   688899999999999999999999875321100         


Q ss_pred             CCCChHHHHHHHHhcCcCC-CCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDK-DAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              ........... .....       ......+.+++.+|+..+|.+|||+.+|+.
T Consensus       213 --------~~~~~~~~~~~~~~~~~-------~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         213 --------LFLISKSNFPPPKLKDK-------EKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             --------HHHHHhccCCCccccch-------hhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                    00000010000 00000       111223556788999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.72  E-value=7.9e-18  Score=178.61  Aligned_cols=190  Identities=16%  Similarity=0.132  Sum_probs=115.0

Q ss_pred             CceeEEecccCCCchhhhccCC-CCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeecccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPN-EATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFGLA  453 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~-~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfGla  453 (614)
                      .+.++||||+++ +|.+++... .....+++.....++.++                  |+|||++.+. .+||+|||+|
T Consensus       140 ~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla  218 (440)
T PTZ00036        140 IFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSA  218 (440)
T ss_pred             eEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccc
Confidence            356799999996 777776431 123457787777666655                  9999999665 6999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.+.....        .....||+.|+| |+   ...++.++|||||||++|||+||+.||.+..... .+.......-.
T Consensus       219 ~~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~-~~~~i~~~~~~  289 (440)
T PTZ00036        219 KNLLAGQR--------SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVD-QLVRIIQVLGT  289 (440)
T ss_pred             hhccCCCC--------cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCC
Confidence            87654321        233578999977 86   3468999999999999999999999997532211 11111111110


Q ss_pred             CChH--HHHHHHHhcCcCCCCCCchhhHHHHH-HHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHhH
Q 046036          530 ESVM--ELVYSRLLQGVDKDAEDEPCMKAKIR-ECLTSLGRIGIASLTETPNERMGVREMVM--EMNVIK  594 (614)
Q Consensus       530 ~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i~  594 (614)
                      ....  ....+...... ............+. .....+.++...|++.+|.+|||+.|++.  .+..++
T Consensus       290 p~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~  358 (440)
T PTZ00036        290 PTEDQLKEMNPNYADIK-FPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLR  358 (440)
T ss_pred             CCHHHHHHhchhhhccc-CCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhh
Confidence            0000  00111110000 00000000000000 11234557778999999999999999984  444443

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.72  E-value=8.8e-18  Score=168.21  Aligned_cols=184  Identities=17%  Similarity=0.148  Sum_probs=116.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||++ ++|.+++.... ...++|..+.+++.++                  |+||+++.++.++++|||+
T Consensus        68 ~~~~~~~iv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~  145 (283)
T cd07835          68 HSENKLYLVFEFLD-LDLKKYMDSSP-LTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGL  145 (283)
T ss_pred             ccCCeEEEEEeccC-cCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeeccc
Confidence            34577899999995 69999987542 2458999988888877                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......       ......+++.|+| |+   ...++.++|||||||++|||+||+.||...... ..+....+...
T Consensus       146 ~~~~~~~~~-------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~  217 (283)
T cd07835         146 ARAFGVPVR-------TYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEI-DQLFRIFRTLG  217 (283)
T ss_pred             ccccCCCcc-------ccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhC
Confidence            976543221       1223456888976 86   235688999999999999999999998653221 11111111111


Q ss_pred             CCChHHHHHHHH------hcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRL------LQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..  .+..++.+      ........  ..............+.++...|++.+|++|||++||++
T Consensus       218 ~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         218 TP--DEDVWPGVTSLPDYKPTFPKWA--RQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             CC--ChHHhhhhhhchhhhhhccccc--ccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            00  00000000      00000000  00000000111134557888999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.72  E-value=1.5e-17  Score=163.94  Aligned_cols=163  Identities=21%  Similarity=0.243  Sum_probs=114.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfG  451 (614)
                      ...+..++||||+++++|.+++.... ...++|..+..++.++                  |+||+++++. .+|++|||
T Consensus        69 ~~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~  147 (257)
T cd08225          69 QENGRLFIVMEYCDGGDLMKRINRQR-GVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFG  147 (257)
T ss_pred             ccCCeEEEEEecCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccc
Confidence            44567899999999999999997542 3357898888887776                  8999999885 56999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      .+........       ......|++.|+| |+  ...++.++|||||||+++|+++|+.||.....     ..+.    
T Consensus       148 ~~~~~~~~~~-------~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~----  211 (257)
T cd08225         148 IARQLNDSME-------LAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL-----HQLV----  211 (257)
T ss_pred             cchhccCCcc-------cccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH-----HHHH----
Confidence            9987654321       1223468889977 76  56788999999999999999999999864211     1111    


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              ...........+   +...       ..+.++..+|++.+|++|||+.|+++
T Consensus       212 --------~~~~~~~~~~~~---~~~~-------~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         212 --------LKICQGYFAPIS---PNFS-------RDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             --------HHHhcccCCCCC---CCCC-------HHHHHHHHHHhccChhhCcCHHHHhh
Confidence                    111111111100   0111       12345667899999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.72  E-value=1.6e-17  Score=172.62  Aligned_cols=119  Identities=21%  Similarity=0.344  Sum_probs=91.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++....   .+++.....++.++                  |+|||++.++.+|++|||+
T Consensus        71 ~~~~~~~lv~E~~~~g~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  147 (364)
T cd05599          71 QDENYLYLIMEYLPGGDMMTLLMKKD---TFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGL  147 (364)
T ss_pred             EcCCeEEEEECCCCCcHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeeccc
Confidence            45677899999999999999997542   47777777766666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCC-------------------------------CCcCcccccccccccc-cc--cCCCCccCceeehhH
Q 046036          453 ARFLPTNVTNPMK-------------------------------GQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGI  498 (614)
Q Consensus       453 a~~~~~~~~~~~~-------------------------------~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGv  498 (614)
                      ++.+.........                               ........+||+.|+| |+  ...++.++|||||||
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  227 (364)
T cd05599         148 CTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGV  227 (364)
T ss_pred             ceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchh
Confidence            9765322110000                               0000113579999977 87  567889999999999


Q ss_pred             HHHHHHhCCCCCCc
Q 046036          499 LLLEIMTGKRPTDE  512 (614)
Q Consensus       499 vllElltG~~p~~~  512 (614)
                      +++||++|+.||..
T Consensus       228 il~el~~G~~Pf~~  241 (364)
T cd05599         228 IMYEMLVGYPPFCS  241 (364)
T ss_pred             HHHHhhcCCCCCCC
Confidence            99999999999975

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.72  E-value=1.6e-17  Score=172.09  Aligned_cols=105  Identities=24%  Similarity=0.213  Sum_probs=83.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++ ++.+.+..     .+++..+..++.++                  |+|||++.++.+||+|||+++.
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~  168 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCccccc
Confidence            457999999986 67777653     36676666666555                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .....        ......||+.|+| |+  ...++.++|||||||+++||++|+.||..
T Consensus       169 ~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  220 (355)
T cd07874         169 AGTSF--------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPG  220 (355)
T ss_pred             CCCcc--------ccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            54321        1234678999977 87  56789999999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.72  E-value=2.1e-17  Score=164.00  Aligned_cols=166  Identities=19%  Similarity=0.260  Sum_probs=113.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++.....++.++                  |+||++++++.+|++|||++
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~  153 (267)
T cd06628          77 DADHLNIFLEYVPGGSVAALLNNY---GAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGIS  153 (267)
T ss_pred             eCCccEEEEEecCCCCHHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCC
Confidence            456789999999999999999753   347777777776666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +......... ..........|+..|+| |.  ...++.++|||||||+++||+||+.||......              
T Consensus       154 ~~~~~~~~~~-~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--------------  218 (267)
T cd06628         154 KKLEANSLST-KTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQL--------------  218 (267)
T ss_pred             cccccccccC-CccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHH--------------
Confidence            8775322110 00011223468889976 76  566788999999999999999999999752110              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         +.+...........+.          .....+.++...|++.+|++||++.||++
T Consensus       219 ---~~~~~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         219 ---QAIFKIGENASPEIPS----------NISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             ---HHHHHHhccCCCcCCc----------ccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence               0000100110000000          11123334566999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.72  E-value=2.5e-17  Score=168.87  Aligned_cols=114  Identities=22%  Similarity=0.303  Sum_probs=89.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.++++..  ...+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~ey~~~g~L~~~l~~~--~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~  148 (332)
T cd05623          71 QDENNLYLVMDYYVGGDLLTLLSKF--EDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGS  148 (332)
T ss_pred             ecCCEEEEEEeccCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecch
Confidence            3456789999999999999999753  2247777666665555                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c------CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.......      .......||+.|+| |+ .      ..++.++|||||||++|||++|+.||..
T Consensus       149 a~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~  210 (332)
T cd05623         149 CLKLMEDGT------VQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYA  210 (332)
T ss_pred             heecccCCc------ceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCC
Confidence            976543221      12234679999977 86 2      3578899999999999999999999975

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.72  E-value=7.9e-18  Score=166.97  Aligned_cols=159  Identities=23%  Similarity=0.272  Sum_probs=113.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfGl  452 (614)
                      .++..++||||+++|+|.+++....   .++|.....++.++                  |+||+++.++ .++++|||+
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~  156 (267)
T PHA03390         80 TLKGHVLIMDYIKDGDLFDLLKKEG---KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGL  156 (267)
T ss_pred             cCCeeEEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCcc
Confidence            3567899999999999999997542   68999888888777                  9999999998 999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......           ...|++.|+| |+  ...++.++|||||||+++||++|+.||.....+......+...   
T Consensus       157 ~~~~~~~~-----------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~---  222 (267)
T PHA03390        157 CKIIGTPS-----------CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKR---  222 (267)
T ss_pred             ceecCCCc-----------cCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHh---
Confidence            87654321           2468889977 87  5678899999999999999999999997543322222221111   


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCC-HHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMG-VREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPs-m~ev~~  588 (614)
                                .....    ....       ..-..+.++...|++.+|.+||+ +.|+++
T Consensus       223 ----------~~~~~----~~~~-------~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        223 ----------QQKKL----PFIK-------NVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             ----------hcccC----Cccc-------ccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence                      10000    0000       11112334556899999999995 688763

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.72  E-value=2.2e-17  Score=164.51  Aligned_cols=169  Identities=15%  Similarity=0.230  Sum_probs=118.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCC------cccCHHHHHHHHhhC------------------CCceeeCCCCCee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGLKIAVDI------------------PSNVLLDYDMTAY  446 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~------~~l~~~~~~~ia~~i------------------~~NILld~~~~~k  446 (614)
                      ...+..++||||+++|+|.++++.....      ..++|..+..++.++                  |+||+++.++.++
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~  157 (275)
T cd05046          78 REAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVK  157 (275)
T ss_pred             CCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEE
Confidence            3456789999999999999999754311      258999999888777                  9999999999999


Q ss_pred             ecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHH
Q 046036          447 VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHN  522 (614)
Q Consensus       447 l~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~  522 (614)
                      ++|||+++.......      .......+++.|+| |+  ....+.++|||||||+++|+++ |..||......  ..  
T Consensus       158 l~~~~~~~~~~~~~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~--~~--  227 (275)
T cd05046         158 VSLLSLSKDVYNSEY------YKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDE--EV--  227 (275)
T ss_pred             EcccccccccCcccc------cccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchH--HH--
Confidence            999999875533221      12233466778966 76  5667889999999999999999 78888542111  01  


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                                   +.....+.......         ......+.+++.+|++.+|++||++.|++..|.
T Consensus       228 -------------~~~~~~~~~~~~~~---------~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         228 -------------LNRLQAGKLELPVP---------EGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             -------------HHHHHcCCcCCCCC---------CCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence                         11100000000000         011124556788999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.72  E-value=6.9e-18  Score=169.85  Aligned_cols=162  Identities=17%  Similarity=0.200  Sum_probs=113.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.+++...    .+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        87 ~~~~~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~  162 (293)
T cd06647          87 VGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFC  162 (293)
T ss_pred             eCCcEEEEEecCCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcce
Confidence            456789999999999999999743    37788877777666                  89999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........       ......|++.|+| |.  ...++.++|||||||++||+++|+.||........ +...       
T Consensus       163 ~~~~~~~~-------~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~-~~~~-------  227 (293)
T cd06647         163 AQITPEQS-------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA-LYLI-------  227 (293)
T ss_pred             eccccccc-------ccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh-eeeh-------
Confidence            76544321       1223568888966 86  56688999999999999999999999975321110 0000       


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                               ........+ ..       ......+.++...|++.+|++||++.+++.+
T Consensus       228 ---------~~~~~~~~~-~~-------~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         228 ---------ATNGTPELQ-NP-------EKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             ---------hcCCCCCCC-Cc-------cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                     000000000 00       0111223456679999999999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.72  E-value=2.6e-17  Score=165.01  Aligned_cols=161  Identities=18%  Similarity=0.262  Sum_probs=114.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++..    ..+++.....++.++                  |+||+++.++.++++|||++
T Consensus        87 ~~~~~~~v~e~~~~~~L~~~~~~----~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~  162 (285)
T cd06648          87 VGDELWVVMEFLEGGALTDIVTH----TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFC  162 (285)
T ss_pred             cCCeEEEEEeccCCCCHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccc
Confidence            35678999999999999999975    247888877777766                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........       ......|++.|+| |.  ...++.++|||||||+++||++|+.||.....  .            
T Consensus       163 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~--~------------  221 (285)
T cd06648         163 AQVSKEVP-------RRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP--L------------  221 (285)
T ss_pred             hhhccCCc-------ccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH--H------------
Confidence            76543211       1223568999977 87  55688999999999999999999999864211  0            


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         +... .+............       ..-..+.+++..|++.+|++||++.++++
T Consensus       222 ---~~~~-~~~~~~~~~~~~~~-------~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         222 ---QAMK-RIRDNLPPKLKNLH-------KVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             ---HHHH-HHHhcCCCCCcccc-------cCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence               0000 11111100000000       01123556777999999999999999885

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.72  E-value=2.2e-17  Score=165.00  Aligned_cols=163  Identities=20%  Similarity=0.241  Sum_probs=113.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...  ...+++.....++.++                  |+||+++.++.++++|||++
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~  150 (280)
T cd06611          73 YENKLWILIEFCDGGALDSIMLEL--ERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVS  150 (280)
T ss_pred             cCCeEEEEeeccCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccc
Confidence            456789999999999999998753  2358888888887776                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      .......       .......|++.|+| |+       ...++.++|||||||++|||++|+.||....... .+..   
T Consensus       151 ~~~~~~~-------~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~-~~~~---  219 (280)
T cd06611         151 AKNKSTL-------QKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMR-VLLK---  219 (280)
T ss_pred             hhhcccc-------cccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHH-HHHH---
Confidence            7654322       11234568889966 75       2346789999999999999999999987532110 0001   


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                    +.....+.......+       ...+.++...|++.+|++||++.+|++
T Consensus       220 --------------~~~~~~~~~~~~~~~-------~~~~~~li~~~l~~~p~~Rps~~~il~  261 (280)
T cd06611         220 --------------ILKSEPPTLDQPSKW-------SSSFNDFLKSCLVKDPDDRPTAAELLK  261 (280)
T ss_pred             --------------HhcCCCCCcCCcccC-------CHHHHHHHHHHhccChhhCcCHHHHhc
Confidence                          111100000000001       112335666899999999999999976

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.72  E-value=2.4e-17  Score=165.36  Aligned_cols=163  Identities=21%  Similarity=0.248  Sum_probs=115.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.+++....  ..+++..+..++.++                  |+||+++.++.++|+|||++
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~  163 (286)
T cd06614          86 VGDELWVVMEYMDGGSLTDIITQNF--VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFA  163 (286)
T ss_pred             ECCEEEEEEeccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchh
Confidence            3467899999999999999998642  368999888888777                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........       ......|+++|+| |+  ...++.++|||||||+++|+++|+.||....... ...         
T Consensus       164 ~~~~~~~~-------~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~-~~~---------  226 (286)
T cd06614         164 AQLTKEKS-------KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR-ALF---------  226 (286)
T ss_pred             hhhccchh-------hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHH-HHH---------
Confidence            76543321       1223457888977 77  5668899999999999999999999986422110 000         


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             ..........+ ..       ......+.++...|++.+|.+||++.+|+.
T Consensus       227 -------~~~~~~~~~~~-~~-------~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         227 -------LITTKGIPPLK-NP-------EKWSPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             -------HHHhcCCCCCc-ch-------hhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence                   00001000000 00       011223446778999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.72  E-value=2.8e-17  Score=173.84  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=90.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+. |+|.+++...  ...++|..+..|+.++                  |+|||++.++.+||+|||++
T Consensus       231 ~~~~~~lv~e~~~-~~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla  307 (461)
T PHA03211        231 VGGLTCLVLPKYR-SDLYTYLGAR--LRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAA  307 (461)
T ss_pred             ECCEEEEEEEccC-CCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCc
Confidence            4567899999995 6999998653  2368999999998887                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTD  511 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~  511 (614)
                      +........     .......||+.|+| |+  ...++.++|||||||++|||++|..|+.
T Consensus       308 ~~~~~~~~~-----~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf  363 (461)
T PHA03211        308 CFARGSWST-----PFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLF  363 (461)
T ss_pred             eeccccccc-----ccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence            876433211     11234679999977 87  6678999999999999999999887653

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.72  E-value=2.4e-17  Score=172.82  Aligned_cols=114  Identities=20%  Similarity=0.247  Sum_probs=92.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+. |+|.+++..   ...++|..+..++.++                  |+|||++.++.+||+|||+
T Consensus       156 ~~~~~~~lv~e~~~-~~l~~~l~~---~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~  231 (392)
T PHA03207        156 RWKSTVCMVMPKYK-CDLFTYVDR---SGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGA  231 (392)
T ss_pred             eeCCEEEEEehhcC-CCHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCcc
Confidence            34567899999997 589999843   3468999998888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++........     .......||+.|+| |+  ...++.++|||||||++|||++|+.||...
T Consensus       232 a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  290 (392)
T PHA03207        232 ACKLDAHPDT-----PQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGK  290 (392)
T ss_pred             ccccCccccc-----ccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            9866543221     12234679999977 87  567899999999999999999999998653

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.72  E-value=2.9e-17  Score=158.86  Aligned_cols=112  Identities=24%  Similarity=0.346  Sum_probs=95.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +.+++...+||||..+|.|++|+..++   .|+..+...+..||                  -.|||||.++++||+|||
T Consensus       122 FENkdKIvivMEYaS~GeLYDYiSer~---~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFG  198 (668)
T KOG0611|consen  122 FENKDKIVIVMEYASGGELYDYISERG---SLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFG  198 (668)
T ss_pred             hcCCceEEEEEEecCCccHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccc
Confidence            566788899999999999999998654   58888888888888                  689999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCC-CccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARY-QHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~-~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.++....        -..++||+|-|+. |.  +..| ...+|.||+||+||-|+.|..||++
T Consensus       199 LSNly~~~k--------fLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG  255 (668)
T KOG0611|consen  199 LSNLYADKK--------FLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDG  255 (668)
T ss_pred             hhhhhcccc--------HHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCC
Confidence            998887653        2567999999955 87  3333 4779999999999999999999986

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.72  E-value=7.6e-18  Score=166.94  Aligned_cols=170  Identities=21%  Similarity=0.162  Sum_probs=113.2

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +...+..++||||+++|+|.+++....   .+++.....++.++                  |+||++++++.+|++|||
T Consensus        71 ~~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg  147 (265)
T cd06631          71 CLDDNTISIFMEFVPGGSISSILNRFG---PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFG  147 (265)
T ss_pred             eecCCeEEEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccch
Confidence            344577899999999999999997532   46777776666655                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++......... ..........|+..|+| |+  ...++.++|||||||+++|++||+.||....... ......    
T Consensus       148 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~-~~~~~~----  221 (265)
T cd06631         148 CARRLAWVGLHG-THSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLA-AMFYIG----  221 (265)
T ss_pred             hhHhhhhccccc-cccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHH-HHHHhh----
Confidence            998653221110 00011223568999977 77  5567899999999999999999999996432110 000000    


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                  .. ....+......       ...+..+..+|++.+|++||++.|++.
T Consensus       222 ------------~~-~~~~~~~~~~~-------~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         222 ------------AH-RGLMPRLPDSF-------SAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             ------------hc-cCCCCCCCCCC-------CHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                        00 00000000001       112345667899999999999999874

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.72  E-value=3.5e-17  Score=164.13  Aligned_cols=164  Identities=18%  Similarity=0.218  Sum_probs=112.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+..++||||+++|+|.+++........+++.....++.++                   |+||+++.++.+|++|||+
T Consensus        70 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~  149 (286)
T cd06622          70 IEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGV  149 (286)
T ss_pred             cCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCC
Confidence            456789999999999999998754223468888877776655                   8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cC------CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA------RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~------~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      ++......         .....|+++|+| |.  ..      .++.++|||||||+++|+++|+.||.......      
T Consensus       150 ~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~------  214 (286)
T cd06622         150 SGNLVASL---------AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYAN------  214 (286)
T ss_pred             cccccCCc---------cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhh------
Confidence            97654321         223468888966 76  22      34789999999999999999999996421110      


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              ....+...........+   +       +....+.+++.+|++.+|++||++.+++.
T Consensus       215 --------~~~~~~~~~~~~~~~~~---~-------~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         215 --------IFAQLSAIVDGDPPTLP---S-------GYSDDAQDFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             --------HHHHHHHHhhcCCCCCC---c-------ccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence                    01111111111000000   0       11223345667899999999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.72  E-value=6.8e-18  Score=170.65  Aligned_cols=112  Identities=18%  Similarity=0.278  Sum_probs=87.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||++ |+|.+++...  ...+++.....++.++                  |+||++++++.+|++|||++
T Consensus        75 ~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  151 (301)
T cd07873          75 TEKSLTLVFEYLD-KDLKQYLDDC--GNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLA  151 (301)
T ss_pred             cCCeEEEEEeccc-cCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcch
Confidence            4567899999998 5999998753  2347777777776666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +.......       ......+++.|+| |.   ...++.++|||||||+++||+||+.||...
T Consensus       152 ~~~~~~~~-------~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~  208 (301)
T cd07873         152 RAKSIPTK-------TYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGS  208 (301)
T ss_pred             hccCCCCC-------cccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            76543221       1223467888977 76   345788999999999999999999999753

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.72  E-value=2.8e-17  Score=162.92  Aligned_cols=172  Identities=20%  Similarity=0.219  Sum_probs=117.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.++++.......++|.....++.++                  |+||++++++.+|++|||++
T Consensus        70 ~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~  149 (267)
T cd06610          70 VGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVS  149 (267)
T ss_pred             eCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchH
Confidence            356789999999999999999754333457888777776666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cC-CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ..+.......   ........|+..|+| |+  .. ..+.++|||||||+++||++|+.||....... .....      
T Consensus       150 ~~~~~~~~~~---~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~-~~~~~------  219 (267)
T cd06610         150 ASLADGGDRT---RKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMK-VLMLT------  219 (267)
T ss_pred             HHhccCcccc---ccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhh-hHHHH------
Confidence            8766543210   011234568899976 76  33 68899999999999999999999997532211 11111      


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                +.......+....     .......+.++...|++.+|++||++.|++.
T Consensus       220 ----------~~~~~~~~~~~~~-----~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         220 ----------LQNDPPSLETGAD-----YKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             ----------hcCCCCCcCCccc-----cccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                      1110000000000     0011233456777999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.71  E-value=2.5e-17  Score=171.20  Aligned_cols=106  Identities=23%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++ +|.+++..     .+++.....++.++                  |+||+++.++.+||+|||+++.
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~  175 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  175 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccc
Confidence            457999999986 77777743     36777766666655                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .....        ......||+.|+| |+  ...++.++|||||||++|||++|+.||...
T Consensus       176 ~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  228 (364)
T cd07875         176 AGTSF--------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  228 (364)
T ss_pred             cCCCC--------cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCC
Confidence            54321        1234578999977 87  667889999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.71  E-value=1.1e-17  Score=169.80  Aligned_cols=113  Identities=17%  Similarity=0.274  Sum_probs=87.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++ +|.+++...  ...+++.....++.++                  |+||+++.++.+||+|||+
T Consensus        74 ~~~~~~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~  150 (309)
T cd07872          74 HTDKSLTLVFEYLDK-DLKQYMDDC--GNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGL  150 (309)
T ss_pred             eeCCeEEEEEeCCCC-CHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcccc
Confidence            345678999999986 898888653  2347777777666665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++.......       ......+|+.|+| |.   ...++.++|||||||+++||+||+.||...
T Consensus       151 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~  208 (309)
T cd07872         151 ARAKSVPTK-------TYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGS  208 (309)
T ss_pred             ceecCCCcc-------ccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            976543221       1223567889966 76   346789999999999999999999999753

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.71  E-value=2.5e-17  Score=165.19  Aligned_cols=181  Identities=18%  Similarity=0.171  Sum_probs=116.6

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++||||+++ +|.+++.... ...++|..+..++.++                  |+||++++++.+|++|||+++..
T Consensus        80 ~~~l~~e~~~~-~l~~~l~~~~-~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~  157 (287)
T cd07838          80 KLTLVFEHVDQ-DLATYLSKCP-KPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIY  157 (287)
T ss_pred             eeEEEehhccc-CHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceec
Confidence            37999999985 8999887542 2358999888888877                  89999999999999999999876


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCChH
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVM  533 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~~  533 (614)
                      .....        .....++..|+| |+  ...++.++|||||||+++||++|+.||...... ..+..+..........
T Consensus       158 ~~~~~--------~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  228 (287)
T cd07838         158 SFEMA--------LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEA-DQLDKIFDVIGLPSEE  228 (287)
T ss_pred             cCCcc--------cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChH-HHHHHHHHHcCCCChH
Confidence            44321        223457888966 77  567889999999999999999999998753221 1122221111100000


Q ss_pred             HHHHHH--HhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          534 ELVYSR--LLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       534 ~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ......  ........+  .........+....+.++...|++.+|++||++.|++.
T Consensus       229 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         229 EWPRNVSLPRSSFPSYT--PRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             hcCCCcccchhhccccc--ccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence            000000  000000000  01111112233345567888999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.71  E-value=2.4e-17  Score=166.90  Aligned_cols=172  Identities=18%  Similarity=0.208  Sum_probs=113.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+++.++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.+|++|||++
T Consensus        72 ~~~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~  148 (305)
T cd05609          72 TKRHLCMVMEYVEGGDCATLLKNI---GALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLS  148 (305)
T ss_pred             cCCEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCc
Confidence            456789999999999999999753   247777776666555                  99999999999999999998


Q ss_pred             cccCCCCCCCC--------CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          454 RFLPTNVTNPM--------KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       454 ~~~~~~~~~~~--------~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      +..........        ..........|+..|+| |+  ...++.++|||||||++||+++|+.||......      
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~------  222 (305)
T cd05609         149 KIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPE------  222 (305)
T ss_pred             cccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH------
Confidence            75321110000        00001123467889976 87  567889999999999999999999998642111      


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMN  591 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~  591 (614)
                                 +.......... ..+.....       ....+.+++.+|++.+|++||++.++.+.|+
T Consensus       223 -----------~~~~~~~~~~~-~~~~~~~~-------~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~  272 (305)
T cd05609         223 -----------ELFGQVISDDI-EWPEGDEA-------LPADAQDLISRLLRQNPLERLGTGGAFEVKQ  272 (305)
T ss_pred             -----------HHHHHHHhccc-CCCCcccc-------CCHHHHHHHHHHhccChhhccCccCHHHHHh
Confidence                       11111111110 00111000       1122346777999999999999766665554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>PTZ00284 protein kinase; Provisional

Probab=99.71  E-value=1.7e-17  Score=177.95  Aligned_cols=107  Identities=17%  Similarity=0.207  Sum_probs=85.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCC----------
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDM----------  443 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~----------  443 (614)
                      .++.++||||+ +|+|.+++...   ..+++.....|+.++                   |+|||++.++          
T Consensus       204 ~~~~~iv~~~~-g~~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~  279 (467)
T PTZ00284        204 TGHMCIVMPKY-GPCLLDWIMKH---GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRA  279 (467)
T ss_pred             CceEEEEEecc-CCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccc
Confidence            45689999998 66899988753   257887777776655                   9999998765          


Q ss_pred             ------CeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          444 ------TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       444 ------~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                            .+||+|||.+.....          ..+..+||++|+| |+  ...++.++|||||||++|||+||+.||+..
T Consensus       280 ~~~~~~~vkl~DfG~~~~~~~----------~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~  348 (467)
T PTZ00284        280 LPPDPCRVRICDLGGCCDERH----------SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH  348 (467)
T ss_pred             cCCCCceEEECCCCccccCcc----------ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                  499999998754321          2334789999977 87  667899999999999999999999999753

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.71  E-value=1.3e-17  Score=167.28  Aligned_cols=185  Identities=19%  Similarity=0.200  Sum_probs=118.2

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++ +|.+++....  ..+++..+..++.++                  |+||++++++.+|++|||+++.
T Consensus        73 ~~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~  149 (287)
T cd07840          73 GSIYMVFEYMDH-DLTGLLDSPE--VKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARP  149 (287)
T ss_pred             CcEEEEeccccc-cHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceee
Confidence            678999999985 9999987542  368888888887776                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC-C-
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL-P-  529 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~-~-  529 (614)
                      ......      ...+...++..|+| |.   ...++.++|||||||+++||+||+.||+...... .+........ + 
T Consensus       150 ~~~~~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~-~~~~~~~~~~~~~  222 (287)
T cd07840         150 YTKRNS------ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELE-QLEKIFELCGSPT  222 (287)
T ss_pred             ccCCCc------ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCc
Confidence            654321      11233457788966 85   3457899999999999999999999997533211 1111111000 0 


Q ss_pred             -CChHHHHHHHHhcCcCCCCCCchhhHHHHHHH-HHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 -ESVMELVYSRLLQGVDKDAEDEPCMKAKIREC-LTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       .......+-............+........+. ...+.+++..|++.+|++||++++++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         223 DENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence             00000000000000000111111111122222 456778999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.71  E-value=1.6e-17  Score=170.16  Aligned_cols=114  Identities=24%  Similarity=0.344  Sum_probs=90.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.++++...  ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~Ey~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~  148 (331)
T cd05624          71 QDENYLYLVMDYYVGGDLLTLLSKFE--DRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGS  148 (331)
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccc
Confidence            35677899999999999999997532  246777666666555                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c------CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.......      .......||++|+| |+ .      ..++.++|||||||++|||++|+.||..
T Consensus       149 a~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~  210 (331)
T cd05624         149 CLKMNQDGT------VQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA  210 (331)
T ss_pred             eeeccCCCc------eeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccC
Confidence            987654321      11234679999977 86 2      4678899999999999999999999974

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.71  E-value=1.3e-17  Score=165.83  Aligned_cols=168  Identities=20%  Similarity=0.264  Sum_probs=113.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.++++|||+
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~  154 (272)
T cd06629          78 TTEEYLSIFLEYVPGGSIGSCLRTY---GRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGI  154 (272)
T ss_pred             ccCCceEEEEecCCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeeccc
Confidence            4456789999999999999999754   357888777766666                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cC--CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA--RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~--~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ++........     .......|+..|+| |.  ..  .++.++|||||||+++|+++|+.||.....    ......  
T Consensus       155 ~~~~~~~~~~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~----~~~~~~--  223 (272)
T cd06629         155 SKKSDDIYDN-----DQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEA----IAAMFK--  223 (272)
T ss_pred             cccccccccc-----cccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcch----HHHHHH--
Confidence            9765432111     12234568889966 76  22  478999999999999999999999864211    000000  


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                 ............+  .   ..+....+.++...|++.+|++||+|.||+.
T Consensus       224 -----------~~~~~~~~~~~~~--~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         224 -----------LGNKRSAPPIPPD--V---SMNLSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             -----------hhccccCCcCCcc--c---cccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence                       0000000000000  0   0111233445667999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.71  E-value=7.3e-18  Score=162.05  Aligned_cols=183  Identities=21%  Similarity=0.174  Sum_probs=118.1

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHH----HHHHhhC--------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEG----LKIAVDI--------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~----~~ia~~i--------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...|+|+|+|+. +|...++...   .|.-...    +++..|+              |+|+|++.+...||+|||+||.
T Consensus        99 ~DvYiV~elMet-DL~~iik~~~---~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~  174 (359)
T KOG0660|consen   99 NDVYLVFELMET-DLHQIIKSQQ---DLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARY  174 (359)
T ss_pred             ceeEEehhHHhh-HHHHHHHcCc---cccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceee
Confidence            457999999987 9999998542   3544433    3344443              9999999999999999999998


Q ss_pred             cCCCCCCCCCCCcCccccccccccc-ccc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccC-chHHHHHHhhCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYN-MEW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADC-LSLHNFCEMALPE  530 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~-aE~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~-~~l~~~~~~~~~~  530 (614)
                      .... .+    ..-.|..+.|.+|. ||.   ...|+...||||.||++.||++|+.-|.+...-. ..+...+-+..++
T Consensus       175 ~~~~-~~----~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~  249 (359)
T KOG0660|consen  175 LDKF-FE----DGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSE  249 (359)
T ss_pred             cccc-Cc----ccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCH
Confidence            8643 11    12246678899994 487   6789999999999999999999998886532211 1111111111111


Q ss_pred             C-h----HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 S-V----MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~-~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      . .    .+.+.+.+.... ..|  +..+...+...-...+++.-+.+..||.+|+|++|+++
T Consensus       250 e~l~~i~s~~ar~yi~slp-~~p--~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~  309 (359)
T KOG0660|consen  250 EDLQKIRSEKARPYIKSLP-QIP--KQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALA  309 (359)
T ss_pred             HHHHHhccHHHHHHHHhCC-CCC--CCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhc
Confidence            1 1    122333333222 111  22233333333334445556678899999999999986

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.71  E-value=1.5e-17  Score=166.69  Aligned_cols=184  Identities=17%  Similarity=0.162  Sum_probs=117.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+ +|+|.+++....  ..+++..+..++.++                  |+||+++.++.++++|||+++
T Consensus        71 ~~~~~~v~e~~-~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~  147 (286)
T cd07832          71 GSGFVLVMEYM-PSDLSEVLRDEE--RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLAR  147 (286)
T ss_pred             CCeeEEEeccc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecc
Confidence            56789999999 999999987532  458888888887777                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......      .......|+.+|+| |+   ...++.++||||+||+++||+||+.||......  ....+.......
T Consensus       148 ~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~--~~~~~~~~~~~~  219 (286)
T cd07832         148 LFSEEEP------RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDI--EQLAIVFRTLGT  219 (286)
T ss_pred             cccCCCC------CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHH--HHHHHHHHHcCC
Confidence            7654321      12234578899976 76   334688999999999999999998777543211  111111111110


Q ss_pred             ChHHHHHHHHhc-----CcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQ-----GVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ... ...+.+..     ...........+.....+....+.++..+|++.+|++||++++++.
T Consensus       220 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         220 PNE-ETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             CCh-HHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            000 00010000     0000000000111111122345667888999999999999999985

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.71  E-value=1.2e-17  Score=164.58  Aligned_cols=161  Identities=19%  Similarity=0.193  Sum_probs=111.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++++|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        72 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~  148 (258)
T cd06632          72 REEDNLYIFLELVPGGSLAKLLKKY---GSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGM  148 (258)
T ss_pred             ecCCeEEEEEEecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCcc
Confidence            3456789999999999999999753   247777777766655                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +.......        ......|++.|+| |+  ... ++.++|||||||+++|+++|+.||...... .....+...  
T Consensus       149 ~~~~~~~~--------~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~--  217 (258)
T cd06632         149 AKQVVEFS--------FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGV-AAVFKIGRS--  217 (258)
T ss_pred             ceeccccc--------cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHH-HHHHHHHhc--
Confidence            88654332        1233568888966 76  333 789999999999999999999998753210 000000000  


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                   ......+   .       ..-..+.++..+|++.+|++||++.+++.
T Consensus       218 -------------~~~~~~~---~-------~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         218 -------------KELPPIP---D-------HLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             -------------ccCCCcC---C-------CcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence                         0000000   0       01122335667899999999999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.71  E-value=2.2e-17  Score=183.57  Aligned_cols=161  Identities=20%  Similarity=0.271  Sum_probs=109.7

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC-------------------------CCceeeCCC----
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI-------------------------PSNVLLDYD----  442 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i-------------------------~~NILld~~----  442 (614)
                      .+..++||||+++|+|.++|.... ....+++.....|+.+|                         |+|||++.+    
T Consensus        86 ~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~l  165 (1021)
T PTZ00266         86 NQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHI  165 (1021)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccc
Confidence            456799999999999999997532 12357777776665543                         899999643    


Q ss_pred             -------------CCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc----cCCCCccCceeehhHHHHHHH
Q 046036          443 -------------MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW----VARYQHKGKGYSCGILLLEIM  504 (614)
Q Consensus       443 -------------~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~----~~~~~~k~DVySfGvvllEll  504 (614)
                                   ..+||+|||+++.+....        ......||+.|+| |+    ...++.++||||||||+|||+
T Consensus       166 g~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s--------~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELL  237 (1021)
T PTZ00266        166 GKITAQANNLNGRPIAKIGDFGLSKNIGIES--------MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELC  237 (1021)
T ss_pred             ccccccccccCCCCceEEccCCccccccccc--------cccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHH
Confidence                         348999999998764332        1234679999977 86    245789999999999999999


Q ss_pred             hCCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHH
Q 046036          505 TGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVR  584 (614)
Q Consensus       505 tG~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~  584 (614)
                      ||+.||.....    .            ...+. .+..... .+..         .....+.+++..|++.+|++||++.
T Consensus       238 TGk~PF~~~~~----~------------~qli~-~lk~~p~-lpi~---------~~S~eL~dLI~~~L~~dPeeRPSa~  290 (1021)
T PTZ00266        238 SGKTPFHKANN----F------------SQLIS-ELKRGPD-LPIK---------GKSKELNILIKNLLNLSAKERPSAL  290 (1021)
T ss_pred             HCCCCCCcCCc----H------------HHHHH-HHhcCCC-CCcC---------CCCHHHHHHHHHHhcCChhHCcCHH
Confidence            99999964211    0            11111 1111100 0000         0012344567789999999999999


Q ss_pred             HHHH
Q 046036          585 EMVM  588 (614)
Q Consensus       585 ev~~  588 (614)
                      |++.
T Consensus       291 QlL~  294 (1021)
T PTZ00266        291 QCLG  294 (1021)
T ss_pred             HHhc
Confidence            9984

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-17  Score=172.09  Aligned_cols=165  Identities=20%  Similarity=0.249  Sum_probs=115.4

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...+||||.++.|||.+.|+... ...|-...-..+|.||                  ..|+||-..-.+||||||+.|.
T Consensus       183 qp~mMV~ELaplGSLldrLrka~-~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRa  261 (1039)
T KOG0199|consen  183 QPAMMVFELAPLGSLLDRLRKAK-KAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRA  261 (1039)
T ss_pred             chhhHHhhhcccchHHHHHhhcc-ccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceec
Confidence            44679999999999999999732 2334444444455554                  8999999999999999999999


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      +..++.+    +.......-.+.|.| |-  ..+++.++|||+|||.+|||+| |..||.+..+.              .
T Consensus       262 Lg~ned~----Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~--------------q  323 (1039)
T KOG0199|consen  262 LGENEDM----YVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGI--------------Q  323 (1039)
T ss_pred             cCCCCcc----eEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHH--------------H
Confidence            9877653    111112223345644 66  7899999999999999999999 78888753221              1


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                      +.+.+|.   +.--+    ||      ..|.+++.+++..||+.+|.+|||+..+.+.+
T Consensus       324 IL~~iD~---~erLp----RP------k~csedIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  324 ILKNIDA---GERLP----RP------KYCSEDIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             HHHhccc---cccCC----CC------CCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence            1222221   11001    11      24666778899999999999999999998544

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.71  E-value=4.3e-17  Score=161.34  Aligned_cols=167  Identities=23%  Similarity=0.270  Sum_probs=112.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++|+||+++|+|.++++..   ..+++..+..++.++                  |+||++++++.+||+|||++
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~  146 (264)
T cd06626          70 HREKVYIFMEYCSGGTLEELLEHG---RILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCA  146 (264)
T ss_pred             cCCEEEEEEecCCCCcHHHHHhhc---CCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccc
Confidence            456789999999999999999753   246777777776665                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCC---CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR---YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~---~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ..........   ........+++.|+| |+  ...   .+.++||||||++++|+++|+.||...... ...       
T Consensus       147 ~~~~~~~~~~---~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~-~~~-------  215 (264)
T cd06626         147 VKLKNNTTTM---GEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNE-FQI-------  215 (264)
T ss_pred             cccCCCCCcc---cccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcch-HHH-------
Confidence            8765433210   000113567888976 87  333   789999999999999999999999643211 000       


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              ............| ..       ......+.++...|++.+|++||++.|++.
T Consensus       216 --------~~~~~~~~~~~~~-~~-------~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         216 --------MFHVGAGHKPPIP-DS-------LQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             --------HHHHhcCCCCCCC-cc-------cccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                    0000000000000 00       001122335667999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.71  E-value=1.2e-17  Score=171.00  Aligned_cols=123  Identities=16%  Similarity=0.127  Sum_probs=89.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.+++.... ...+++..+.+++.++                  |+||+++.++.++++|||
T Consensus        68 ~~~~~~~~lv~e~~~~~~l~~~~~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~  146 (327)
T cd08227          68 FIADNELWVVTSFMAYGSAKDLICTHF-MDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLR  146 (327)
T ss_pred             EEECCEEEEEEeccCCCcHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccc
Confidence            344667899999999999999996432 2348888888887776                  999999999999999998


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-c---CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V---ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~---~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .+.....................++..|+| |+ .   ..++.++|||||||+++||++|+.||...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  213 (327)
T cd08227         147 SNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  213 (327)
T ss_pred             hhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            764432211100000001112356777866 87 2   35889999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.71  E-value=1.9e-17  Score=166.89  Aligned_cols=182  Identities=15%  Similarity=0.160  Sum_probs=113.4

Q ss_pred             ceeEEecccCCCchhhhccCCCC--CcccCHHHHHHHHhhC------------------CCceeeCC-CCCeeecccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEA--TRRLDLAEGLKIAVDI------------------PSNVLLDY-DMTAYVGDFGLA  453 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~--~~~l~~~~~~~ia~~i------------------~~NILld~-~~~~kl~DfGla  453 (614)
                      ..++||||+++ +|.+++.....  ...+++.....++.++                  |+||+++. ++.+|++|||++
T Consensus        80 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~  158 (295)
T cd07837          80 SLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLG  158 (295)
T ss_pred             eEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccc
Confidence            37899999996 89998865321  3457888888888777                  99999998 899999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh-hC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM-AL  528 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~-~~  528 (614)
                      +......       .......+++.|+| |+   ...++.++|||||||+++||++|..||....... .+...... ..
T Consensus       159 ~~~~~~~-------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~  230 (295)
T cd07837         159 RAFSIPV-------KSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQ-QLLHIFKLLGT  230 (295)
T ss_pred             eecCCCc-------cccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHhCC
Confidence            8654321       11233457888966 86   3457899999999999999999999986532111 11111110 00


Q ss_pred             CCC--hHHHHHHHHhcCcCCCCC-CchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PES--VMELVYSRLLQGVDKDAE-DEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~--~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      +..  ......  +..... .+. ............-..+.++...|++.+|++||++.|++.
T Consensus       231 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         231 PTEQVWPGVSK--LRDWHE-FPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             CChhhCcchhh--ccchhh-cCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            100  000000  000000 000 000011111122334567788999999999999999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.71  E-value=3.2e-17  Score=170.07  Aligned_cols=106  Identities=25%  Similarity=0.251  Sum_probs=83.4

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++ +|.+.++.     .+++.....++.++                  |+||+++.++.+||+|||+++.
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~  172 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHM-----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  172 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccc
Confidence            347999999986 67776653     25666666665555                  9999999999999999999976


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .....        ......||+.|+| |.  ...++.++||||+||++|||+||+.||...
T Consensus       173 ~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         173 ACTNF--------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             cccCc--------cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            54321        2334678999977 87  667899999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.71  E-value=1.1e-17  Score=158.42  Aligned_cols=111  Identities=21%  Similarity=0.260  Sum_probs=93.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      -+..|+|||||+. ||.+.++...  +++.-.+..-+..|+                  +||+|+..+|..||+|||+||
T Consensus       149 ~d~iy~VMe~~Eh-DLksl~d~m~--q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR  225 (419)
T KOG0663|consen  149 MDKIYIVMEYVEH-DLKSLMETMK--QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAR  225 (419)
T ss_pred             cceeeeeHHHHHh-hHHHHHHhcc--CCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhh
Confidence            4558999999999 9999998753  456666666666665                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .+....       ...+..+-|.+|.| |.   ...|++..|+||+|||+.|++++++-|.+.
T Consensus       226 ~ygsp~-------k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~  281 (419)
T KOG0663|consen  226 EYGSPL-------KPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGK  281 (419)
T ss_pred             hhcCCc-------ccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCC
Confidence            987653       34667889999965 87   678999999999999999999999888764

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.71  E-value=2.7e-17  Score=168.88  Aligned_cols=188  Identities=16%  Similarity=0.165  Sum_probs=118.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+. |+|.+++...   ..+++.....++.++                  |+||++++++.+||+|||+++
T Consensus        80 ~~~~~lv~e~~~-~~l~~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~  155 (334)
T cd07855          80 FKDVYVVMDLME-SDLHHIIHSD---QPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMAR  155 (334)
T ss_pred             CceEEEEEehhh-hhHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccce
Confidence            456899999996 6999999753   248888888887776                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh--C
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA--L  528 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~--~  528 (614)
                      ........   .........|+..|+| |+   ...++.++|||||||+++||++|+.||....... .+.......  .
T Consensus       156 ~~~~~~~~---~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~-~~~~~~~~~g~~  231 (334)
T cd07855         156 GLSSSPTE---HKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVH-QLKLILSVLGSP  231 (334)
T ss_pred             eecccCcC---CCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHH-HHHHHHHHhCCC
Confidence            66433211   0011233578889966 76   2468899999999999999999999997532211 111111110  0


Q ss_pred             CCC-hHHHHHHHHhcCcCCCCCC-chhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PES-VMELVYSRLLQGVDKDAED-EPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      +.. .....+..+.......+.. ...+..........+.++...|++.+|++||++.+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         232 SEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             hhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            111 1111111111111100000 01111111223445667888999999999999999886

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.70  E-value=2.1e-17  Score=166.42  Aligned_cols=172  Identities=15%  Similarity=0.153  Sum_probs=110.1

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++++|++.. ++.+.+...   ...++.....|+.++                  |+|||++.++.+||+|||+|+.+
T Consensus       101 ~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~  176 (294)
T PHA02882        101 YRFILLEKLVE-NTKEIFKRI---KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHF  176 (294)
T ss_pred             EEEEEEehhcc-CHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcCCceee
Confidence            35788888765 566555432   124566666666666                  99999999999999999999876


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCChH
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVM  533 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~~  533 (614)
                      ..................||+.|+| |.  ...++.++|||||||+++||++|+.||........... ...       .
T Consensus       177 ~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~-~~~-------~  248 (294)
T PHA02882        177 IIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIH-AAK-------C  248 (294)
T ss_pred             ccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHH-HhH-------H
Confidence            5332211000111233579999988 76  66789999999999999999999999976422211110 000       0


Q ss_pred             HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          534 ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       534 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                      +.+ ..+......           ...+...+.++...|+..+|++||++.++.+.+
T Consensus       249 ~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        249 DFI-KRLHEGKIK-----------IKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HHH-HHhhhhhhc-----------cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            111 111111000           011123355677789999999999999998876

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.70  E-value=4.4e-17  Score=166.89  Aligned_cols=114  Identities=25%  Similarity=0.306  Sum_probs=89.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~  148 (331)
T cd05597          71 QDENNLYLVMDYYVGGDLLTLLSKF--EDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGS  148 (331)
T ss_pred             ecCCeEEEEEecCCCCcHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCc
Confidence            4567789999999999999999642  2347777766666655                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c------CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++.......      .......||++|+| |. .      ..++.++|||||||++|||++|+.||..
T Consensus       149 ~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  210 (331)
T cd05597         149 CLRLLADGT------VQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYA  210 (331)
T ss_pred             eeecCCCCC------ccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCC
Confidence            976543321      11223579999977 76 2      3577899999999999999999999964

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=2.9e-17  Score=177.70  Aligned_cols=115  Identities=25%  Similarity=0.361  Sum_probs=91.6

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      .+.++.+.|+|||||+||||-..+.... .-+=+|..  -++..+                  |.|||||..|++|++||
T Consensus       143 AFQD~~~LYlVMdY~pGGDlltLlSk~~-~~pE~~Ar--FY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADF  219 (1317)
T KOG0612|consen  143 AFQDERYLYLVMDYMPGGDLLTLLSKFD-RLPEDWAR--FYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADF  219 (1317)
T ss_pred             HhcCccceEEEEecccCchHHHHHhhcC-CChHHHHH--HHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccc
Confidence            3567889999999999999999998653 22334432  222222                  99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc------c-CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW------V-ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~------~-~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      |-+-.+..++.      ......+|||-|++ |+      . +.|...+|.||.||++|||+.|..||+.
T Consensus       220 GsClkm~~dG~------V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYa  283 (1317)
T KOG0612|consen  220 GSCLKMDADGT------VRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYA  283 (1317)
T ss_pred             hhHHhcCCCCc------EEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchH
Confidence            99977765432      44556789999955 86      3 6899999999999999999999999975

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.70  E-value=3.8e-17  Score=163.04  Aligned_cols=161  Identities=22%  Similarity=0.270  Sum_probs=114.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...    .++|.....++.++                  |+||+++.++.++++|||+
T Consensus        72 ~~~~~~~lv~e~~~~~~l~~~i~~~----~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~  147 (277)
T cd06641          72 LKDTKLWIIMEYLGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGV  147 (277)
T ss_pred             EeCCeEEEEEEeCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeeccc
Confidence            3456789999999999999998642    47888888777766                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|+.+|+| |+  ....+.++|||||||+++|+++|+.|+......  .          
T Consensus       148 ~~~~~~~~~-------~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~--~----------  208 (277)
T cd06641         148 AGQLTDTQI-------KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPM--K----------  208 (277)
T ss_pred             ceecccchh-------hhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchH--H----------
Confidence            976643321       1223567888976 77  566788999999999999999999998642110  0          


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                           .......... +...         ......+.+++..|++.+|++||+|.+++..
T Consensus       209 -----~~~~~~~~~~-~~~~---------~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         209 -----VLFLIPKNNP-PTLE---------GNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             -----HHHHHhcCCC-CCCC---------cccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence                 0000000000 0000         0111234457789999999999999999983

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.70  E-value=5.7e-17  Score=165.13  Aligned_cols=160  Identities=21%  Similarity=0.201  Sum_probs=112.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||++ |+|.+.+...  ...++|..+..++.++                  |+||+++.++.+|++|||+
T Consensus        95 ~~~~~~~lv~e~~~-g~l~~~~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~  171 (317)
T cd06635          95 LREHTAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGS  171 (317)
T ss_pred             eeCCeEEEEEeCCC-CCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCC
Confidence            34567899999997 5888887543  2358899888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      +......           ....|++.|+| |+     ...++.++|||||||+++||++|+.||......          
T Consensus       172 ~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~----------  230 (317)
T cd06635         172 ASIASPA-----------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM----------  230 (317)
T ss_pred             ccccCCc-----------ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHH----------
Confidence            8754332           23568888976 86     246889999999999999999999998642110          


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                             +.............+  .       ......+.+++.+|++.+|.+||++.+|++..
T Consensus       231 -------~~~~~~~~~~~~~~~--~-------~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~  278 (317)
T cd06635         231 -------SALYHIAQNESPTLQ--S-------NEWSDYFRNFVDSCLQKIPQDRPTSEELLKHM  278 (317)
T ss_pred             -------HHHHHHHhccCCCCC--C-------ccccHHHHHHHHHHccCCcccCcCHHHHHhCh
Confidence                   111111111110000  0       01112344677799999999999999999754

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.70  E-value=4.9e-17  Score=160.21  Aligned_cols=165  Identities=24%  Similarity=0.338  Sum_probs=116.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.+++.... ...++|..+..++.++                  |+||++++++.++++|||++
T Consensus        72 ~~~~~~~i~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~  150 (258)
T smart00219       72 EEEPLMIVMEYMEGGDLLDYLRKNR-PKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLS  150 (258)
T ss_pred             CCCeeEEEEeccCCCCHHHHHHhhh-hccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCc
Confidence            3467899999999999999997542 1228888888887776                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........      ......+++.|+| |.  ...++.++||||+||+++||++ |+.||.....              
T Consensus       151 ~~~~~~~~~------~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~--------------  210 (258)
T smart00219      151 RDLYDDDYY------KKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSN--------------  210 (258)
T ss_pred             eeccccccc------ccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCH--------------
Confidence            876554221      1112336788966 76  5678999999999999999999 7888764211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                         .+.............+.          .....+.+++.+|+..+|++|||+.|+++.|
T Consensus       211 ---~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      211 ---EEVLEYLKKGYRLPKPE----------NCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             ---HHHHHHHhcCCCCCCCC----------cCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence               11111111111100000          1123455677899999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.70  E-value=5.3e-17  Score=169.88  Aligned_cols=119  Identities=20%  Similarity=0.293  Sum_probs=87.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...+   .++......++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~E~~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGl  147 (382)
T cd05625          71 QDKDNLYFVMDYIPGGDMMSLLIRMG---IFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL  147 (382)
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCC
Confidence            34667899999999999999997542   35555554444444                  9999999999999999999


Q ss_pred             ccccCCCCCCC----------------------------------------CCCCcCcccccccccccc-cc--cCCCCc
Q 046036          453 ARFLPTNVTNP----------------------------------------MKGQSNSAAVWGSIGYNM-EW--VARYQH  489 (614)
Q Consensus       453 a~~~~~~~~~~----------------------------------------~~~~~~~~~~~gt~~y~a-E~--~~~~~~  489 (614)
                      ++.+.......                                        ..........+||+.|+| |+  ...++.
T Consensus       148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~  227 (382)
T cd05625         148 CTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQ  227 (382)
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCC
Confidence            86432100000                                        000001123579999977 87  667899


Q ss_pred             cCceeehhHHHHHHHhCCCCCCc
Q 046036          490 KGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       490 k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++||||+||++|||+||+.||..
T Consensus       228 ~~DiwSlGvil~elltG~~Pf~~  250 (382)
T cd05625         228 LCDWWSVGVILYEMLVGQPPFLA  250 (382)
T ss_pred             eeeEEechHHHHHHHhCCCCCCC
Confidence            99999999999999999999975

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.70  E-value=3.3e-17  Score=164.06  Aligned_cols=187  Identities=16%  Similarity=0.167  Sum_probs=118.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++ +|.+++........++|..+.+++.++                  |+||++++++.+|++|||+
T Consensus        68 ~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~  146 (284)
T cd07836          68 HTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGL  146 (284)
T ss_pred             eeCCcEEEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecch
Confidence            345678999999995 899988754433468999888887777                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......       ......+++.|+| |.   ...++.++|||||||+++|+++|+.||........ .....+...
T Consensus       147 ~~~~~~~~~-------~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~-~~~~~~~~~  218 (284)
T cd07836         147 ARAFGIPVN-------TFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQ-LLKIFRIMG  218 (284)
T ss_pred             hhhhcCCcc-------ccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHHHhC
Confidence            976543211       1233567888977 86   24568899999999999999999999875422111 111111110


Q ss_pred             CCChHHHHHHHHhc--CcC-CCCCC-chhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQ--GVD-KDAED-EPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~--~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .. ..+. .+.+..  ... ..+.. ..............+.++...|++.+|++||++.|++.
T Consensus       219 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         219 TP-TEST-WPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             CC-Chhh-HHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00 0000 111110  000 00000 00001111122334556778999999999999999874

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.70  E-value=4.8e-17  Score=164.94  Aligned_cols=159  Identities=21%  Similarity=0.212  Sum_probs=111.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||++ |++.+.+...  ...++|..+..++.++                  |+||++++++.+|++|||+
T Consensus        85 ~~~~~~~lv~e~~~-g~l~~~~~~~--~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~  161 (307)
T cd06607          85 LREHTAWLVMEYCL-GSASDILEVH--KKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGS  161 (307)
T ss_pred             EeCCeEEEEHHhhC-CCHHHHHHHc--ccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCc
Confidence            34567899999998 5887777543  2358888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ++.....           ....|++.|+| |.     ...++.++|||||||++|||+||+.||......          
T Consensus       162 ~~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~----------  220 (307)
T cd06607         162 ASLVSPA-----------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM----------  220 (307)
T ss_pred             ceecCCC-----------CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHH----------
Confidence            9765432           12567888976 76     246788999999999999999999998642110          


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                             ......... ..+.. ..       ......+.++...|++.+|++||+|.+|+..
T Consensus       221 -------~~~~~~~~~-~~~~~-~~-------~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         221 -------SALYHIAQN-DSPTL-SS-------NDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             -------HHHHHHhcC-CCCCC-Cc-------hhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                   000000000 00000 00       0112234566779999999999999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.70  E-value=2.3e-17  Score=165.62  Aligned_cols=112  Identities=20%  Similarity=0.201  Sum_probs=88.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||++++.+..+....   ..+++.....++.++                  |+||++++++.+|++|||++
T Consensus        71 ~~~~~~iv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~  147 (288)
T cd07833          71 RKGRLYLVFEYVERTLLELLEASP---GGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFA  147 (288)
T ss_pred             ECCEEEEEEecCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecc
Confidence            356789999999998777766532   247777777776666                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cC-CCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-RYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ........      .......|+.+|+| |+  .. .++.++|||||||+++|+++|+.||..
T Consensus       148 ~~~~~~~~------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~  204 (288)
T cd07833         148 RALRARPA------SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPG  204 (288)
T ss_pred             cccCCCcc------ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            87654422      12233568888977 87  44 678999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.70  E-value=4.4e-17  Score=165.80  Aligned_cols=122  Identities=19%  Similarity=0.137  Sum_probs=90.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.++++... ...+++.....++.++                  |+||+++.++.+|++|||.
T Consensus        69 ~~~~~~~~~~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~  147 (314)
T cd08216          69 IVDSELYVVSPLMAYGSCEDLLKTHF-PEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRY  147 (314)
T ss_pred             ecCCeEEEEEeccCCCCHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCcc
Confidence            34567899999999999999997542 2347777777776665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--c--CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +.....................++..|+| |+  .  ..++.++|||||||+++||++|+.||...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~  213 (314)
T cd08216         148 SVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDM  213 (314)
T ss_pred             ceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            87654322110000111233567788966 76  2  35788999999999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.70  E-value=4.5e-17  Score=170.10  Aligned_cols=119  Identities=21%  Similarity=0.288  Sum_probs=88.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...++.++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+|++|||+
T Consensus        71 ~~~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGl  147 (377)
T cd05629          71 QDAQYLYLIMEFLPGGDLMTMLIKY---DTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGL  147 (377)
T ss_pred             EcCCeeEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccc
Confidence            3467789999999999999999753   246666665555555                  9999999999999999999


Q ss_pred             ccccCCCCCCC----------CCC------------------------------CcCcccccccccccc-cc--cCCCCc
Q 046036          453 ARFLPTNVTNP----------MKG------------------------------QSNSAAVWGSIGYNM-EW--VARYQH  489 (614)
Q Consensus       453 a~~~~~~~~~~----------~~~------------------------------~~~~~~~~gt~~y~a-E~--~~~~~~  489 (614)
                      ++.+.......          ...                              .......+||++|+| |+  ...++.
T Consensus       148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  227 (377)
T cd05629         148 STGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQ  227 (377)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCC
Confidence            96432110000          000                              000012579999977 87  667899


Q ss_pred             cCceeehhHHHHHHHhCCCCCCc
Q 046036          490 KGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       490 k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++|||||||+++||+||+.||..
T Consensus       228 ~~DiwSlGvil~elltG~~Pf~~  250 (377)
T cd05629         228 ECDWWSLGAIMFECLIGWPPFCS  250 (377)
T ss_pred             ceeeEecchhhhhhhcCCCCCCC
Confidence            99999999999999999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.70  E-value=1.5e-16  Score=153.44  Aligned_cols=175  Identities=19%  Similarity=0.204  Sum_probs=125.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-----CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeec
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-----ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-----~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~  448 (614)
                      ..++.+..|.|+.-|+|..+|.-.+     ..+.+.-.+.+.+|.|+                  +.|.++|+..++|++
T Consensus       359 ~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVklt  438 (563)
T KOG1024|consen  359 DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLT  438 (563)
T ss_pred             ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEec
Confidence            4556789999999999999998322     23445555555555555                  899999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~  524 (614)
                      |=.++|-+.+.+.+.....     .-....||+ |-  ...++..+|||||||+||||+| |+.|+.+..+.        
T Consensus       439 DsaLSRDLFP~DYhcLGDn-----EnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPf--------  505 (563)
T KOG1024|consen  439 DSALSRDLFPGDYHCLGDN-----ENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPF--------  505 (563)
T ss_pred             cchhccccCcccccccCCC-----CCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHH--------
Confidence            9999998877766522111     112335666 65  6789999999999999999999 99998764321        


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                                .+...++++..-..+         -.|..++..|+..||+..|++||+.+|++.-|.++..+..
T Consensus       506 ----------Em~~ylkdGyRlaQP---------~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~~qlt  560 (563)
T KOG1024|consen  506 ----------EMEHYLKDGYRLAQP---------FNCPDELFTVMACCWALLPEERPSFSQLVICLSEFHTQLT  560 (563)
T ss_pred             ----------HHHHHHhccceecCC---------CCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHh
Confidence                      112222222211100         1455567778899999999999999999999998876643

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.70  E-value=3.5e-17  Score=162.07  Aligned_cols=165  Identities=24%  Similarity=0.323  Sum_probs=114.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGl  452 (614)
                      .++..++|+||+++++|.+++....  ..++.....+++.++                   |+||++++++.+||+|||.
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~  147 (265)
T cd06605          70 NNGDISICMEYMDGGSLDKILKEVQ--GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGV  147 (265)
T ss_pred             cCCEEEEEEEecCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeeccc
Confidence            4577899999999999999997542  346666666555555                   8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........         ....|+..|+| |+  ...++.++|||||||+++|+++|+.||......            +
T Consensus       148 ~~~~~~~~~---------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~------------~  206 (265)
T cd06605         148 SGQLVNSLA---------KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDP------------P  206 (265)
T ss_pred             chhhHHHHh---------hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccc------------c
Confidence            876543211         12668888977 87  667889999999999999999999998753211            1


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....+.+...+.......+..         ..-..+.++...|+..+|++|||+.|++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         207 DGIFELLQYIVNEPPPRLPSG---------KFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             ccHHHHHHHHhcCCCCCCChh---------hcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence            111222222222111000000         01223445667899999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.70  E-value=6.6e-17  Score=159.94  Aligned_cols=165  Identities=23%  Similarity=0.277  Sum_probs=115.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+..++||||+++|+|.+++...   ..+++..+.+++.++                   |+||+++.++.++++|||+
T Consensus        70 ~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~  146 (264)
T cd06623          70 KEGEISIVLEYMDGGSLADLLKKV---GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGI  146 (264)
T ss_pred             cCCeEEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCcc
Confidence            456789999999999999999753   346777777665555                   8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|+..|+| |.  ...++.++||||||+++||++||+.||......             
T Consensus       147 ~~~~~~~~~-------~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~-------------  206 (264)
T cd06623         147 SKVLENTLD-------QCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQP-------------  206 (264)
T ss_pred             ceecccCCC-------cccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccccc-------------
Confidence            987654322       1224568888966 87  567888999999999999999999998753210             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                       ...+.............+..         .....+.++...|++.+|++||++.|+++.
T Consensus       207 -~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         207 -SFFELMQAICDGPPPSLPAE---------EFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             -CHHHHHHHHhcCCCCCCCcc---------cCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence             11111111111111100000         012334456678999999999999999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.70  E-value=3.7e-17  Score=169.22  Aligned_cols=109  Identities=21%  Similarity=0.348  Sum_probs=87.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+. |+|.+++...  ...++|..+.+|+.++                  |+|||++.++.+||+|||+
T Consensus       127 ~~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~  203 (357)
T PHA03209        127 VSGAITCMVLPHYS-SDLYTYLTKR--SRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGA  203 (357)
T ss_pred             EeCCeeEEEEEccC-CcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCcc
Confidence            34567899999995 5999998653  3468999999888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPT  510 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~  510 (614)
                      ++......        ......||+.|+| |+  ...++.++|||||||++|||+++..|+
T Consensus       204 a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        204 AQFPVVAP--------AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             ccccccCc--------ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            97543221        1234679999976 87  567899999999999999999976654

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2.3e-17  Score=161.17  Aligned_cols=119  Identities=21%  Similarity=0.343  Sum_probs=97.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeC---CCCCeeec
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLD---YDMTAYVG  448 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld---~~~~~kl~  448 (614)
                      +.+..|-|.|||++.+|+-+|...+   .++..+...|+++|                    |.||||-   ..+++||.
T Consensus       539 DtdsFCTVLEYceGNDLDFYLKQhk---lmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKIT  615 (775)
T KOG1151|consen  539 DTDSFCTVLEYCEGNDLDFYLKQHK---LMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKIT  615 (775)
T ss_pred             ccccceeeeeecCCCchhHHHHhhh---hhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEee
Confidence            3456789999999999999998543   47777777888887                    9999995   45789999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc------cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW------VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~------~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |||++++++++......+-..++..+||++|.| |.      ..+++.|+||||.||++|..+.|++||...
T Consensus       616 DFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhn  687 (775)
T KOG1151|consen  616 DFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHN  687 (775)
T ss_pred             ecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCc
Confidence            999999998776554444445667899999988 65      347899999999999999999999999753

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.69  E-value=2.8e-17  Score=164.56  Aligned_cols=163  Identities=22%  Similarity=0.234  Sum_probs=111.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfG  451 (614)
                      .++..++|||||+ |+|.+++.... ....+++....+++.++                   |+||+++.++.+||+|||
T Consensus        71 ~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg  149 (283)
T cd06617          71 REGDVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFG  149 (283)
T ss_pred             cCCcEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecc
Confidence            4566899999997 68888875421 23468888887777666                   899999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--c----CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V----ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~----~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      +++......        ..+...|+..|+| |.  .    ..++.++|||||||+++||++|+.||.........     
T Consensus       150 ~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~-----  216 (283)
T cd06617         150 ISGYLVDSV--------AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQ-----  216 (283)
T ss_pred             ccccccccc--------ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHH-----
Confidence            998654321        1233568888966 75  1    34688999999999999999999998642111011     


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                 +...+.......+..         .....+.++...|++.+|++||++.+++.
T Consensus       217 -----------~~~~~~~~~~~~~~~---------~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         217 -----------LKQVVEEPSPQLPAE---------KFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             -----------HHHHHhcCCCCCCcc---------ccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                       111111111000100         01123445677899999999999999986

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.69  E-value=5.6e-17  Score=166.70  Aligned_cols=186  Identities=22%  Similarity=0.242  Sum_probs=117.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++||||++ |+|.+++...    .++|..+..++.++                  |+||+++.++.+|++|||+++
T Consensus        81 ~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~  155 (337)
T cd07852          81 DKDIYLVFEYME-TDLHAVIRAN----ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLAR  155 (337)
T ss_pred             CceEEEEecccc-cCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchh
Confidence            345799999998 5999998743    57888777776666                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh--hC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM--AL  528 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~--~~  528 (614)
                      .........  .........|++.|+| |+   ....+.++|||||||+++||+||+.||....... ........  ..
T Consensus       156 ~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~-~~~~~~~~~~~~  232 (337)
T cd07852         156 SLSELEENP--ENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLN-QLEKIIEVIGPP  232 (337)
T ss_pred             ccccccccc--cCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCC
Confidence            765432110  0012234578999977 76   3467889999999999999999999996532211 11111110  00


Q ss_pred             CCC-hH----HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          529 PES-VM----ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       529 ~~~-~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      +.. ..    ...+..+. .... . .+........+....+.+++..|++.+|++|||+.+++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         233 SAEDIESIKSPFAATMLD-SLPS-R-PRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             CHHHHHHHHhhhHHHhhh-hccc-c-cccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            100 00    01111111 0000 0 0001111111223456678889999999999999999964

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.69  E-value=3.3e-17  Score=164.78  Aligned_cols=161  Identities=19%  Similarity=0.272  Sum_probs=112.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...    .+++.....++.++                  |+||++++++.++++|||++
T Consensus        88 ~~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~  163 (292)
T cd06657          88 VGDELWVVMEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFC  163 (292)
T ss_pred             eCCEEEEEEecCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccc
Confidence            457789999999999999988532    47787777777766                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........       ......|+++|+| |+  ...++.++|||||||+++|+++|+.||.....  ...........+.
T Consensus       164 ~~~~~~~~-------~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~--~~~~~~~~~~~~~  234 (292)
T cd06657         164 AQVSKEVP-------RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPP  234 (292)
T ss_pred             eecccccc-------cccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhhCCc
Confidence            76543221       1223568899977 87  56778999999999999999999999864211  1111111111110


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                  ...    ..       ......+.++...|++.+|.+||++.+++.
T Consensus       235 ------------~~~----~~-------~~~~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         235 ------------KLK----NL-------HKVSPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             ------------ccC----Cc-------ccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence                        000    00       001112334566899999999999999886

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.69  E-value=3.9e-17  Score=169.38  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=91.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~  147 (360)
T cd05627          71 QDKRNLYLIMEFLPGGDMMTLLMKK---DTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGL  147 (360)
T ss_pred             EcCCEEEEEEeCCCCccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccC
Confidence            4467789999999999999999753   246777666666555                  9999999999999999999


Q ss_pred             ccccCCCCCCCC----------------------------CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHH
Q 046036          453 ARFLPTNVTNPM----------------------------KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLL  501 (614)
Q Consensus       453 a~~~~~~~~~~~----------------------------~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvll  501 (614)
                      ++.+........                            .........+||+.|+| |.  ...++.++|||||||+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvily  227 (360)
T cd05627         148 CTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMY  227 (360)
T ss_pred             CcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceee
Confidence            875532210000                            00001124579999977 87  667899999999999999


Q ss_pred             HHHhCCCCCCcc
Q 046036          502 EIMTGKRPTDEM  513 (614)
Q Consensus       502 ElltG~~p~~~~  513 (614)
                      ||+||+.||...
T Consensus       228 el~tG~~Pf~~~  239 (360)
T cd05627         228 EMLIGYPPFCSE  239 (360)
T ss_pred             ecccCCCCCCCC
Confidence            999999999753

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.69  E-value=9.4e-18  Score=154.52  Aligned_cols=123  Identities=23%  Similarity=0.267  Sum_probs=86.1

Q ss_pred             CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCC
Q 046036          434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGK  507 (614)
Q Consensus       434 ~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~  507 (614)
                      |+|||+|+.+++|+||||++..+-+...        .+..+|.+.||| |-     ..+|+.++|||||||.++||.||+
T Consensus       220 PSNILlDe~GniKlCDFGIsGrlvdSkA--------htrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~  291 (391)
T KOG0983|consen  220 PSNILLDERGNIKLCDFGISGRLVDSKA--------HTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQ  291 (391)
T ss_pred             ccceEEccCCCEEeecccccceeecccc--------cccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhccc
Confidence            9999999999999999999987766533        456789999988 65     457899999999999999999999


Q ss_pred             CCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHH
Q 046036          508 RPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMV  587 (614)
Q Consensus       508 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~  587 (614)
                      .||.....+.                +++-..+. ...+.-.....++..+       .+....|+..|+.+||.-.+++
T Consensus       292 yPy~~c~tdF----------------e~ltkvln-~ePP~L~~~~gFSp~F-------~~fv~~CL~kd~r~RP~Y~~Ll  347 (391)
T KOG0983|consen  292 YPYKGCKTDF----------------EVLTKVLN-EEPPLLPGHMGFSPDF-------QSFVKDCLTKDHRKRPKYNKLL  347 (391)
T ss_pred             CCCCCCCccH----------------HHHHHHHh-cCCCCCCcccCcCHHH-------HHHHHHHhhcCcccCcchHHHh
Confidence            9998633221                11111221 1111100101122222       2344589999999999988877


Q ss_pred             H
Q 046036          588 M  588 (614)
Q Consensus       588 ~  588 (614)
                      +
T Consensus       348 ~  348 (391)
T KOG0983|consen  348 E  348 (391)
T ss_pred             c
Confidence            5

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.69  E-value=7.8e-17  Score=163.62  Aligned_cols=191  Identities=16%  Similarity=0.136  Sum_probs=117.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||++. ++.+.+...  ...+++.....++.++                  |+||++++++.+|++|||+++
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~--~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  163 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENP--SVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLAR  163 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccch
Confidence            4467999999986 788777653  3358888888887777                  899999999999999999998


Q ss_pred             ccCCCCCCCCC----CCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          455 FLPTNVTNPMK----GQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       455 ~~~~~~~~~~~----~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ...........    .....+...|++.|+| |.   ...++.++|||||||+++||++|+.||....... ........
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~-~~~~~~~~  242 (311)
T cd07866         164 PYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDID-QLHLIFKL  242 (311)
T ss_pred             hccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHH
Confidence            66433221000    1112234578889976 86   3457899999999999999999999987532211 11111111


Q ss_pred             hC-C-CChHHHHHHHHhcCc--CCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 AL-P-ESVMELVYSRLLQGV--DKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~-~-~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .. + +...... ..+....  .......+............+.++...|++.+|++|||+.|++.
T Consensus       243 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         243 CGTPTEETWPGW-RSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             hCCCChhhchhh-hhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            00 0 0000000 0000000  00000011111111222345667888999999999999999874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.69  E-value=5e-17  Score=163.44  Aligned_cols=113  Identities=18%  Similarity=0.259  Sum_probs=86.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++ +|.+++....  ..+++.....++.++                  |+||+++.++.+|++|||+
T Consensus        73 ~~~~~~~lv~e~~~~-~L~~~~~~~~--~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~  149 (291)
T cd07844          73 HTKKTLTLVFEYLDT-DLKQYMDDCG--GGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGL  149 (291)
T ss_pred             ecCCeEEEEEecCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECcccc
Confidence            345678999999985 9999987542  257777777766665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++.......       ......++..|+| |+   ...++.++|||||||++|||++|+.||...
T Consensus       150 ~~~~~~~~~-------~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~  207 (291)
T cd07844         150 ARAKSVPSK-------TYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGS  207 (291)
T ss_pred             ccccCCCCc-------cccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            875432211       1122356788866 76   245788999999999999999999999653

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.69  E-value=1.1e-16  Score=158.75  Aligned_cols=112  Identities=27%  Similarity=0.303  Sum_probs=87.7

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++|+|.+++...   ..+++....+++.++                  |+||+++.++.+|++|||+++.
T Consensus        79 ~~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~  155 (265)
T cd06652          79 RTLSIFMEHMPGGSIKDQLKSY---GALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKR  155 (265)
T ss_pred             ceEEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccc
Confidence            4578999999999999998743   236777777776666                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .......    ........|+..|+| |.  ...++.++|||||||++||+++|+.||..
T Consensus       156 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  211 (265)
T cd06652         156 LQTICLS----GTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAE  211 (265)
T ss_pred             ccccccc----ccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCc
Confidence            5432110    011233568899977 87  56788999999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.69  E-value=4.8e-17  Score=163.30  Aligned_cols=169  Identities=21%  Similarity=0.233  Sum_probs=114.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.++++|||+
T Consensus        75 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~  151 (288)
T cd05583          75 QTDTKLHLILDYVNGGELFTHLYQR---EHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGL  151 (288)
T ss_pred             ecCCEEEEEEecCCCCcHHHHHhhc---CCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcc
Confidence            3456788999999999999998743   247777776666555                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cC--CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA--RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~--~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ++.......      .......|++.|++ |.  ..  ..+.++||||||++++||+||+.||....... .        
T Consensus       152 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~-~--------  216 (288)
T cd05583         152 SKEFLAEEE------ERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQN-S--------  216 (288)
T ss_pred             ccccccccc------cccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccc-h--------
Confidence            986544321      11223568889966 76  22  26889999999999999999999986321110 0        


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                          ..+.. ..+.....+.+   ....       ..+.++..+|++.+|++|||+.+|.+.|+.
T Consensus       217 ----~~~~~-~~~~~~~~~~~---~~~~-------~~l~~li~~~l~~~p~~R~t~~~~~~~l~~  266 (288)
T cd05583         217 ----QSEIS-RRILKSKPPFP---KTMS-------AEARDFIQKLLEKDPKKRLGANGADEIKNH  266 (288)
T ss_pred             ----HHHHH-HHHHccCCCCC---cccC-------HHHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence                01111 11111111111   1111       123356678999999999999988776653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.69  E-value=5.5e-17  Score=169.41  Aligned_cols=120  Identities=20%  Similarity=0.290  Sum_probs=87.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...+   .++......++.++                  |+|||++.++.+||+|||+
T Consensus        71 ~~~~~~~lv~E~~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~  147 (376)
T cd05598          71 QDKDNLYFVMDYIPGGDMMSLLIRLG---IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL  147 (376)
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCC
Confidence            34678899999999999999997542   35555544444443                  9999999999999999999


Q ss_pred             ccccCCCCCCC------------------------------------CCCCcCcccccccccccc-cc--cCCCCccCce
Q 046036          453 ARFLPTNVTNP------------------------------------MKGQSNSAAVWGSIGYNM-EW--VARYQHKGKG  493 (614)
Q Consensus       453 a~~~~~~~~~~------------------------------------~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DV  493 (614)
                      |..+.......                                    ..........+||+.|+| |+  ...++.++||
T Consensus       148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  227 (376)
T cd05598         148 CTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDW  227 (376)
T ss_pred             CccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceee
Confidence            85331100000                                    000001123579999977 87  5678899999


Q ss_pred             eehhHHHHHHHhCCCCCCcc
Q 046036          494 YSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       494 ySfGvvllElltG~~p~~~~  513 (614)
                      |||||++|||++|+.||...
T Consensus       228 wSlGvilyell~G~~Pf~~~  247 (376)
T cd05598         228 WSVGVILYEMLVGQPPFLAD  247 (376)
T ss_pred             eeccceeeehhhCCCCCCCC
Confidence            99999999999999999753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.69  E-value=9.1e-17  Score=158.17  Aligned_cols=160  Identities=20%  Similarity=0.247  Sum_probs=115.2

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ....++||||+++++|.+++.... ....+++.....++.++                  |+||++++++.+|++|||++
T Consensus        71 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~  150 (256)
T cd08530          71 GNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGIS  150 (256)
T ss_pred             CCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccch
Confidence            467899999999999999986532 23457888877776665                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +......         .....|++.|+| |+  ...++.++|+||+|++++|+++|+.||......              
T Consensus       151 ~~~~~~~---------~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~--------------  207 (256)
T cd08530         151 KVLKKNM---------AKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ--------------  207 (256)
T ss_pred             hhhccCC---------cccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--------------
Confidence            8765431         122457888976 87  567788999999999999999999999753211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         +.............+          ......+.++...|++.+|++||++.|++.
T Consensus       208 ---~~~~~~~~~~~~~~~----------~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         208 ---DLRYKVQRGKYPPIP----------PIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             ---HHHHHHhcCCCCCCc----------hhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence               111111111110000          012233556778999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.69  E-value=4.9e-17  Score=165.67  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=86.6

Q ss_pred             CCceeEEecccCCCchhhhccCCC------CCcccCHHHHHHHHhhC------------------CCceee----CCCCC
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE------ATRRLDLAEGLKIAVDI------------------PSNVLL----DYDMT  444 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~------~~~~l~~~~~~~ia~~i------------------~~NILl----d~~~~  444 (614)
                      +...++||||+++ +|.+++....      ....+++.....++.++                  |+||++    ++++.
T Consensus        72 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~  150 (317)
T cd07867          72 DRKVWLLFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGR  150 (317)
T ss_pred             CCeEEEEEeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCc
Confidence            4567899999986 7877764221      22357888877777766                  999999    56678


Q ss_pred             eeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +||+|||+++........    ........||+.|+| |+  . ..++.++|||||||+++||+||+.||..
T Consensus       151 ~kl~DfG~a~~~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         151 VKIADMGFARLFNSPLKP----LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             EEEeeccceeccCCCccc----ccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            999999999876543211    112334678999977 86  2 4578999999999999999999999864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.69  E-value=2.5e-17  Score=172.17  Aligned_cols=167  Identities=22%  Similarity=0.335  Sum_probs=119.1

Q ss_pred             ceeEEecccCCCchhhhccCCCCC----cccCHHHHHHHHhhC--------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEAT----RRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~----~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      +..||.+|||.|+|.++++.++..    ..|.|.  ++||.|.              +.|||+..-..+||.|||+++++
T Consensus       771 ~~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~--~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll  848 (1177)
T KOG1025|consen  771 TLQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWC--YQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLL  848 (1177)
T ss_pred             hHHHHHHhcccchHHHHHHHhhccccHHHHHHHH--HHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhcc
Confidence            477999999999999999865421    124443  3444444              89999999999999999999998


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      ..++..     -......-.+.||| |-  ...++.++|||||||.+||++| |.+|++....++               
T Consensus       849 ~~d~~e-----y~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~e---------------  908 (1177)
T KOG1025|consen  849 APDEKE-----YSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEE---------------  908 (1177)
T ss_pred             Cccccc-----ccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHH---------------
Confidence            876542     11222233455677 65  7889999999999999999999 999998643221               


Q ss_pred             HHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          533 MELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       533 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                         +.+.+..... ..|          .-+...+..++.+||..|++.||++++...+..+....
T Consensus       909 ---I~dlle~geRLsqP----------piCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  909 ---IPDLLEKGERLSQP----------PICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             ---hhHHHhccccCCCC----------CCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence               1111211111 000          13444566788899999999999999999988877644

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.69  E-value=8.9e-17  Score=157.59  Aligned_cols=161  Identities=20%  Similarity=0.267  Sum_probs=114.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++++|.+++....  ..++|..+..++.++                  |+||++++++.++|+|||.+.
T Consensus        69 ~~~~~l~~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~  146 (253)
T cd05122          69 KDELWIVMEFCSGGSLKDLLKSTN--QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSA  146 (253)
T ss_pred             CCeEEEEEecCCCCcHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeeccccc
Confidence            466899999999999999997642  468888888887776                  899999999999999999997


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......        .....|+..|+| |+  ...++.++||||||++++|+++|+.|+......               
T Consensus       147 ~~~~~~~--------~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---------------  203 (253)
T cd05122         147 QLSDTKA--------RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPM---------------  203 (253)
T ss_pred             ccccccc--------ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchH---------------
Confidence            7654321        234678889977 87  556789999999999999999999998753110               


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                        +.............+..        ......+.++...|++.+|++|||+.|++.
T Consensus       204 --~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         204 --KALFKIATNGPPGLRNP--------EKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             --HHHHHHHhcCCCCcCcc--------cccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence              00000000100000000        000123445667999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.69  E-value=8.4e-17  Score=165.85  Aligned_cols=176  Identities=18%  Similarity=0.166  Sum_probs=113.0

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++|+||+ +++|.+++...    .+++.....++.++                  |+||++++++.+|++|||+++.
T Consensus        93 ~~~~~~~~~~-~~~l~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  167 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIVKCQ----KLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQ  167 (343)
T ss_pred             CcEEEEeecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCcccee
Confidence            4578999998 67999888632    47888877777766                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ....          .....||+.|+| |.  . ..++.++|||||||+++||++|+.||...... ..+..+....... 
T Consensus       168 ~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~-  235 (343)
T cd07878         168 ADDE----------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYI-DQLKRIMEVVGTP-  235 (343)
T ss_pred             cCCC----------cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHhCCC-
Confidence            5432          223578999976 87  2 46889999999999999999999999653211 1111111111100 


Q ss_pred             hHHHHH-------HHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMELVY-------SRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..+...       ..........+..  .........-..+.++...|++.+|++|||+.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~  297 (343)
T cd07878         236 SPEVLKKISSEHARKYIQSLPHMPQQ--DLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALA  297 (343)
T ss_pred             CHHHHHhcchhhHHHHhhccccccch--hHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            011110       0111111100100  000001111123457778999999999999999995

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.69  E-value=1e-16  Score=164.62  Aligned_cols=185  Identities=18%  Similarity=0.117  Sum_probs=116.5

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++ +|.+++...    .+++.....++.++                  |+||+++.++.+|++|||+++.
T Consensus        81 ~~~~lv~e~~~~-~l~~~~~~~----~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~  155 (336)
T cd07849          81 NDVYIVQELMET-DLYKLIKTQ----HLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARI  155 (336)
T ss_pred             ceEEEEehhccc-CHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceee
Confidence            457999999985 898888643    47888777777666                  8999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......    ........||+.|+| |+   ...++.++|||||||+++||++|+.||.....  ..............
T Consensus       156 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~--~~~~~~~~~~~~~~  229 (336)
T cd07849         156 ADPEHDH----TGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDY--LHQLNLILGVLGTP  229 (336)
T ss_pred             ccccccc----cCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHcCCC
Confidence            6443221    011234578999977 86   34678999999999999999999999965211  11111111111111


Q ss_pred             hHHHHHHHH----hcCcCCCCC-CchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          532 VMELVYSRL----LQGVDKDAE-DEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       532 ~~~~~~~~l----~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      ..+.++...    .......+. ....+..........+.+++..|++.+|++|||+.|++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         230 SQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             CHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            111111111    100000000 0000111111223456678889999999999999999875

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.68  E-value=1.1e-16  Score=158.33  Aligned_cols=157  Identities=24%  Similarity=0.278  Sum_probs=110.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+...++||||+++|+|.+++....   .+++..+..++.++                  |+||+++.++.+|++|||++
T Consensus        64 ~~~~~~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~  140 (262)
T cd05572          64 DKKYIYMLMEYCLGGELWTILRDRG---LFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFA  140 (262)
T ss_pred             cCCccEEEEecCCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcc
Confidence            4567899999999999999997542   47777777776665                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +......        ......|++.|+| |.  ...++.++|+||||+++||+++|+.||.....+.             
T Consensus       141 ~~~~~~~--------~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-------------  199 (262)
T cd05572         141 KKLKSGQ--------KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDP-------------  199 (262)
T ss_pred             cccCccc--------ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCH-------------
Confidence            8765432        1223568889977 77  5678899999999999999999999997532111             


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGV  583 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm  583 (614)
                        .+.......+......+.         .....+.++...|++.+|++||++
T Consensus       200 --~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~l~~~p~~R~~~  241 (262)
T cd05572         200 --MEIYNDILKGNGKLEFPN---------YIDKAAKDLIKQLLRRNPEERLGN  241 (262)
T ss_pred             --HHHHHHHhccCCCCCCCc---------ccCHHHHHHHHHHccCChhhCcCC
Confidence              111111111111000000         012244567789999999999994

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.68  E-value=3.7e-17  Score=153.98  Aligned_cols=153  Identities=20%  Similarity=0.211  Sum_probs=105.6

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHH------HHhhC------------CCceeeCCCCCeeeccc
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLK------IAVDI------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~------ia~~i------------~~NILld~~~~~kl~Df  450 (614)
                      .++..+..|.||||+.+|.|+-+|...+   .++..+..-      .|+|.            -.|.|||.|++.||+||
T Consensus       236 sFQt~drlCFVMeyanGGeLf~HLsrer---~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDF  312 (516)
T KOG0690|consen  236 SFQTQDRLCFVMEYANGGELFFHLSRER---VFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDF  312 (516)
T ss_pred             hhccCceEEEEEEEccCceEeeehhhhh---cccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeec
Confidence            3566788999999999999999998643   233322111      22332            68999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCc-hHHHHHHh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL-SLHNFCEM  526 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~-~l~~~~~~  526 (614)
                      |++|.--...       ..+...||||.|.| |+  ...|....|.|..|||+|||++||.||.....+.. .+...-..
T Consensus       313 GLCKE~I~~g-------~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~  385 (516)
T KOG0690|consen  313 GLCKEEIKYG-------DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDL  385 (516)
T ss_pred             ccchhccccc-------ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhc
Confidence            9998533222       23567999999965 87  56788999999999999999999999976433221 22333344


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCc
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDE  551 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~  551 (614)
                      .+|..+...+...+.+....+|.+|
T Consensus       386 kFPr~ls~eAktLLsGLL~kdP~kR  410 (516)
T KOG0690|consen  386 KFPRTLSPEAKTLLSGLLKKDPKKR  410 (516)
T ss_pred             cCCccCCHHHHHHHHHHhhcChHhh
Confidence            4555555555555555444444443

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.68  E-value=1e-16  Score=163.37  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=86.9

Q ss_pred             CCceeEEecccCCCchhhhccCCC------CCcccCHHHHHHHHhhC------------------CCceee----CCCCC
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE------ATRRLDLAEGLKIAVDI------------------PSNVLL----DYDMT  444 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~------~~~~l~~~~~~~ia~~i------------------~~NILl----d~~~~  444 (614)
                      +...++||||+++ +|.+++....      ....+++.....++.|+                  |+|||+    +.++.
T Consensus        72 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~  150 (317)
T cd07868          72 DRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGR  150 (317)
T ss_pred             CcEEEEEEeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCc
Confidence            4567899999976 8888875321      12357887777777776                  999999    45678


Q ss_pred             eeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +||+|||+++........    ........||+.|+| |+  . ..++.++||||+||+++||+||+.||..
T Consensus       151 ~kl~DfG~a~~~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         151 VKIADMGFARLFNSPLKP----LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             EEEeecCceeccCCCCcc----ccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            999999999876543211    112334678999977 86  3 4588999999999999999999999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.68  E-value=9.2e-17  Score=157.76  Aligned_cols=178  Identities=19%  Similarity=0.240  Sum_probs=121.9

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------------CCceeeCCCCCeeec
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------------~~NILld~~~~~kl~  448 (614)
                      .++||.||-++|||+|+|...    .++-...+++|..+                          +.|||+..++.+.|+
T Consensus       283 QLwLvTdYHe~GSL~DyL~r~----tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IA  358 (513)
T KOG2052|consen  283 QLWLVTDYHEHGSLYDYLNRN----TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA  358 (513)
T ss_pred             EEEEeeecccCCcHHHHHhhc----cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEe
Confidence            479999999999999999864    36666666665544                          799999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc-cCC-----C--CccCceeehhHHHHHHHhC----------CCC
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VAR-----Y--QHKGKGYSCGILLLEIMTG----------KRP  509 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~-----~--~~k~DVySfGvvllElltG----------~~p  509 (614)
                      |+|+|-........   -.......+||-.||| |+ ...     +  -..+||||||.|+||+..+          +.|
T Consensus       359 DLGLAv~h~~~t~~---idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~P  435 (513)
T KOG2052|consen  359 DLGLAVRHDSDTDT---IDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLP  435 (513)
T ss_pred             eceeeEEecccCCc---ccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCC
Confidence            99999654433221   1123455899999988 87 211     1  1468999999999999862          346


Q ss_pred             CCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          510 TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       510 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      |.+..+.+..            ..++-+-...+...+.++.|  |  ...+++..+.+++..||..+|..|-|+=.+-+.
T Consensus       436 yyd~Vp~DPs------------~eeMrkVVCv~~~RP~ipnr--W--~s~~~l~~m~klMkeCW~~Np~aRltALriKKt  499 (513)
T KOG2052|consen  436 YYDVVPSDPS------------FEEMRKVVCVQKLRPNIPNR--W--KSDPALRVMAKLMKECWYANPAARLTALRIKKT  499 (513)
T ss_pred             cccCCCCCCC------------HHHHhcceeecccCCCCCcc--c--ccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHH
Confidence            6554333222            22222222222222222222  1  124678888999999999999999999888888


Q ss_pred             HHHhHH
Q 046036          590 MNVIKE  595 (614)
Q Consensus       590 L~~i~~  595 (614)
                      |.++.+
T Consensus       500 l~~l~~  505 (513)
T KOG2052|consen  500 LAKLSN  505 (513)
T ss_pred             HHHHhc
Confidence            877664

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.68  E-value=8.1e-17  Score=161.92  Aligned_cols=113  Identities=18%  Similarity=0.285  Sum_probs=85.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||++ |++.+++....  ..+.+.....++.++                  |+||+++.++.+||+|||+
T Consensus        73 ~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~  149 (291)
T cd07870          73 HTKETLTFVFEYMH-TDLAQYMIQHP--GGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGL  149 (291)
T ss_pred             ecCCeEEEEEeccc-CCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEecccc
Confidence            34567899999996 68877775432  246777776676665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++.......       ......+++.|+| |+   ...++.++|||||||+++||+||+.||+..
T Consensus       150 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~  207 (291)
T cd07870         150 ARAKSIPSQ-------TYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGV  207 (291)
T ss_pred             ccccCCCCC-------CCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCc
Confidence            976433211       1223457889977 86   235788999999999999999999999754

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.68  E-value=1.7e-17  Score=154.55  Aligned_cols=112  Identities=25%  Similarity=0.362  Sum_probs=90.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHH-----------------HhhC-CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI-----------------AVDI-PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~i-----------------a~~i-~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++|||||..||+.+.++-++  +.|...+...|                 .++| +.||||+-++.||++|||+|.
T Consensus       100 ~sDLWIVMEYCGAGSiSDI~R~R~--K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAG  177 (502)
T KOG0574|consen  100 HSDLWIVMEYCGAGSISDIMRARR--KPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAG  177 (502)
T ss_pred             CCceEeehhhcCCCcHHHHHHHhc--CCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccc
Confidence            455799999999999999997643  34555444433                 3333 899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .+.+..       .....+.|||.||| |+  .-.|+.++|+||+|+...||..|++||.+.
T Consensus       178 QLTDTM-------AKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDI  232 (502)
T KOG0574|consen  178 QLTDTM-------AKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDI  232 (502)
T ss_pred             hhhhhH-------HhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccc
Confidence            876543       23556899999988 77  456889999999999999999999999764

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.68  E-value=4.8e-17  Score=163.79  Aligned_cols=110  Identities=21%  Similarity=0.258  Sum_probs=88.7

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++ +|.+++....  ..+++.....++.++                  |+||+++.++.+||+|||+++.
T Consensus        79 ~~~~lv~e~~~~-~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~  155 (293)
T cd07843          79 DKIYMVMEYVEH-DLKSLMETMK--QPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLARE  155 (293)
T ss_pred             CcEEEEehhcCc-CHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceee
Confidence            678999999985 9999987542  258899888888877                  8999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ......       ......+++.|+| |.   ....+.++|+|||||+++||++|+.||...
T Consensus       156 ~~~~~~-------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~  210 (293)
T cd07843         156 YGSPLK-------PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGK  210 (293)
T ss_pred             ccCCcc-------ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            654321       1223457888976 76   234688999999999999999999999753

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.68  E-value=3.3e-17  Score=161.71  Aligned_cols=165  Identities=30%  Similarity=0.430  Sum_probs=117.2

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++..   ...+++..+..++.++                  |+||++++++.++|+|||.+.
T Consensus        70 ~~~~~~v~~~~~~~~L~~~l~~---~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~  146 (260)
T PF00069_consen   70 DNYLYIVMEYCPGGSLQDYLQK---NKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSV  146 (260)
T ss_dssp             SSEEEEEEEEETTEBHHHHHHH---HSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTE
T ss_pred             cccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5678899999999999999982   3358888888888887                  999999999999999999997


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ......       .......++..|+| |+   ....+.++||||+|++++||++|+.||.......             
T Consensus       147 ~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~-------------  206 (260)
T PF00069_consen  147 KLSENN-------ENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDD-------------  206 (260)
T ss_dssp             ESTSTT-------SEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHH-------------
T ss_pred             cccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccchh-------------
Confidence            642211       22345678999966 87   3688999999999999999999999998641100             


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       ....+..............       .......+.++...|++.+|++||+|.++++
T Consensus       207 -~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  207 -QLEIIEKILKRPLPSSSQQ-------SREKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             -HHHHHHHHHHTHHHHHTTS-------HTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             -hhhhhhhcccccccccccc-------cchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             0111111111000000000       0001145667788999999999999999975

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.68  E-value=4.5e-17  Score=167.34  Aligned_cols=187  Identities=15%  Similarity=0.118  Sum_probs=118.3

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+. |+|.+++...   ..+++.....++.++                  |+||+++.++.+||+|||+++.
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  157 (337)
T cd07858          82 NDVYIVYELMD-TDLHQIIRSS---QTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLART  157 (337)
T ss_pred             CcEEEEEeCCC-CCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccc
Confidence            34799999997 6999998643   358888888877776                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCc--hHHHHHHhhCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL--SLHNFCEMALP  529 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~--~l~~~~~~~~~  529 (614)
                      ......       ......|+..|+| |.   ...++.++|||||||+++||++|+.||........  .+........+
T Consensus       158 ~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~  230 (337)
T cd07858         158 TSEKGD-------FMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSE  230 (337)
T ss_pred             cCCCcc-------cccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCh
Confidence            643321       1223467888976 86   24688999999999999999999999965321100  00111000000


Q ss_pred             CChHH----HHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH--HHHhH
Q 046036          530 ESVME----LVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME--MNVIK  594 (614)
Q Consensus       530 ~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~--L~~i~  594 (614)
                      .....    .....+.. ....+  ++............+.+++.+|++.+|++|||++|++..  ++.++
T Consensus       231 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~  298 (337)
T cd07858         231 EDLGFIRNEKARRYIRS-LPYTP--RQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLH  298 (337)
T ss_pred             HHhhhcCchhhhHHHHh-cCccc--ccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhc
Confidence            00000    00011110 00000  011111112233455678889999999999999999975  65543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.68  E-value=7.9e-17  Score=161.18  Aligned_cols=183  Identities=17%  Similarity=0.144  Sum_probs=117.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++ +|.+++..+.  ..+++..+..++.++                  |+||++++++.+|++|||.+
T Consensus        69 ~~~~~~~v~e~~~~-~l~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~  145 (283)
T cd05118          69 HKGDLYLVFEFMDT-DLYKLIKDRQ--RGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLA  145 (283)
T ss_pred             cCCCEEEEEeccCC-CHHHHHHhhc--ccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeee
Confidence            35678999999986 9998887532  468888888887777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cC-CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh---
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM---  526 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~---  526 (614)
                      ........       ......++..|+| |.  .. ..+.++||||+||+++|++||+.||....... .+......   
T Consensus       146 ~~~~~~~~-------~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~-~~~~~~~~~~~  217 (283)
T cd05118         146 RSFGSPVR-------PYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEID-QLFKIFRTLGT  217 (283)
T ss_pred             EecCCCcc-------cccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHcCC
Confidence            87654321       1223457788866 76  33 68899999999999999999999986532211 11111100   


Q ss_pred             hCCCC---hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPES---VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..+..   ..+...........   .............-..+.+++..|++.+|.+||++.+++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         218 PDPEVWPKFTSLARNYKFSFPK---KAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             CchHhcccchhhhhhhhhhhcc---ccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            00000   01100000000000   0011111112233455667888999999999999999975

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.67  E-value=1.6e-16  Score=161.77  Aligned_cols=120  Identities=21%  Similarity=0.275  Sum_probs=91.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++... ....+++..+..++.++                  |+||+++.++.++++|||++
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~~~~~-~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~  150 (316)
T cd05574          72 TETYLCLVMDYCPGGELFRLLQRQ-PGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLS  150 (316)
T ss_pred             cCCEEEEEEEecCCCCHHHHHHhC-CCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchh
Confidence            456789999999999999998753 23467888777776666                  99999999999999999998


Q ss_pred             cccCCCCCCCC----------------------CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCC
Q 046036          454 RFLPTNVTNPM----------------------KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKR  508 (614)
Q Consensus       454 ~~~~~~~~~~~----------------------~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~  508 (614)
                      ...........                      ..........||..|+| |+  ...++.++|||||||++|||++|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~  230 (316)
T cd05574         151 KQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTT  230 (316)
T ss_pred             hcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCC
Confidence            76543221100                      00011123468899977 87  5668899999999999999999999


Q ss_pred             CCCc
Q 046036          509 PTDE  512 (614)
Q Consensus       509 p~~~  512 (614)
                      ||..
T Consensus       231 pf~~  234 (316)
T cd05574         231 PFKG  234 (316)
T ss_pred             CCCC
Confidence            9975

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.67  E-value=9.7e-17  Score=158.72  Aligned_cols=170  Identities=22%  Similarity=0.252  Sum_probs=115.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++....   .+++..+.+++.++                  |+||++++++.+|++|||++
T Consensus        64 ~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~  140 (265)
T cd05579          64 GKKNLYLVMEYLPGGDLASLLENVG---SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLS  140 (265)
T ss_pred             cCcEEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccc
Confidence            4567899999999999999997532   58888888887777                  89999999999999999998


Q ss_pred             cccCCCCCC-CCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTN-PMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~-~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ......... ............++..|+| |+  ....+.++||||||++++|+++|+.||.....              
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~--------------  206 (265)
T cd05579         141 KVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP--------------  206 (265)
T ss_pred             hhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH--------------
Confidence            765432110 0000112234567888966 76  55678899999999999999999999874321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                         .+.......+... .+.. .       .....+.++...|++.+|++|||+.+|.+.|
T Consensus       207 ---~~~~~~~~~~~~~-~~~~-~-------~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l  255 (265)
T cd05579         207 ---EEIFQNILNGKIE-WPED-V-------EVSDEAIDLISKLLVPDPEKRLGAKSIEEIK  255 (265)
T ss_pred             ---HHHHHHHhcCCcC-CCcc-c-------cCCHHHHHHHHHHhcCCHhhcCCCccHHHHh
Confidence               1111111111111 0000 0       0123344677789999999999996665544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.67  E-value=7.4e-17  Score=148.36  Aligned_cols=184  Identities=20%  Similarity=0.184  Sum_probs=119.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +...+...||+|||+. +|+..++++.  ..+.-.....++.++                  |.|+|++.++..|++|||
T Consensus        70 F~~~~~l~lVfEfm~t-dLe~vIkd~~--i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFG  146 (318)
T KOG0659|consen   70 FPHKSNLSLVFEFMPT-DLEVVIKDKN--IILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFG  146 (318)
T ss_pred             ccCCCceEEEEEeccc-cHHHHhcccc--cccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeeccc
Confidence            3456678899999999 9999998753  356665555555444                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh-
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM-  526 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~-  526 (614)
                      +|+.+.....       ..+..+-|.+|.| |.   ...|....|+||.|||+.||+-|.+-|.+.. +-..+....+. 
T Consensus       147 LAr~f~~p~~-------~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~s-DidQL~~If~~L  218 (318)
T KOG0659|consen  147 LARFFGSPNR-------IQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDS-DIDQLSKIFRAL  218 (318)
T ss_pred             chhccCCCCc-------ccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCc-hHHHHHHHHHHc
Confidence            9998876542       2334478999955 86   6789999999999999999999876555422 11122221111 


Q ss_pred             hCCC--C---hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          527 ALPE--S---VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       527 ~~~~--~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      .-|.  .   +...-|-.-.+.... +..+-    .+..+....+++.-..+..+|.+|.++.|++++
T Consensus       219 GTP~~~~WP~~~~lpdY~~~~~~P~-~~~~~----lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  219 GTPTPDQWPEMTSLPDYVKIQQFPK-PPLNN----LFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             CCCCcccCccccccccHHHHhcCCC-Ccccc----ccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            1111  1   111111111111111 11111    122333344566667799999999999998864

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.67  E-value=1.9e-16  Score=156.45  Aligned_cols=162  Identities=18%  Similarity=0.213  Sum_probs=112.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+..++||||+++++|.++++... ....++|..+..++.++                  |+||++++ ..+|++|||+
T Consensus        73 ~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~  151 (260)
T cd08222          73 ERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGV  151 (260)
T ss_pred             cCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCc
Confidence            3456899999999999999986422 23468898888877776                  89999986 5699999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......|++.|+| |+  ...++.++||||||++++|+++|+.||.....              
T Consensus       152 ~~~~~~~~~-------~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~--------------  210 (260)
T cd08222         152 SRLLMGSCD-------LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF--------------  210 (260)
T ss_pred             eeecCCCcc-------cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH--------------
Confidence            987644321       1223567888966 76  55678899999999999999999999864210              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+..........   +.    ..   ......+.+++.+|+..+|++||++.|+++
T Consensus       211 ---~~~~~~~~~~~~---~~----~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         211 ---LSVVLRIVEGPT---PS----LP---ETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             ---HHHHHHHHcCCC---CC----Cc---chhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence               011111111100   00    00   011123445677999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.67  E-value=2e-16  Score=160.44  Aligned_cols=158  Identities=20%  Similarity=0.205  Sum_probs=109.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+. |++.+++...  ...+++.++..++.++                  |+||+++.++.+|++|||++
T Consensus        86 ~~~~~~lv~e~~~-~~l~~~~~~~--~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~  162 (308)
T cd06634          86 REHTAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSA  162 (308)
T ss_pred             cCCeeEEEEEccC-CCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccc
Confidence            4567899999997 6888887543  2347888777776666                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ......           ....|++.|+| |+     ...++.++|||||||+++||++|+.|+....... ....+.   
T Consensus       163 ~~~~~~-----------~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~---  227 (308)
T cd06634         163 SIMAPA-----------NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIA---  227 (308)
T ss_pred             eeecCc-----------ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHH-HHHHHh---
Confidence            765432           22467888977 76     2467889999999999999999999986421110 000111   


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                   .... +.. ...       .....+.++..+|++.+|++||++.+|+..
T Consensus       228 -------------~~~~-~~~-~~~-------~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~  267 (308)
T cd06634         228 -------------QNES-PAL-QSG-------HWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (308)
T ss_pred             -------------hcCC-CCc-Ccc-------cccHHHHHHHHHHhhCCcccCCCHHHHhhC
Confidence                         1100 000 000       111223456679999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.67  E-value=7.9e-17  Score=158.66  Aligned_cols=161  Identities=24%  Similarity=0.250  Sum_probs=115.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++++|.+++....   .++|..+..++.++                  |+||+++.++.++++|||.+..
T Consensus        74 ~~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~  150 (260)
T cd06606          74 NTLNIFLEYVSGGSLSSLLKKFG---KLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKR  150 (260)
T ss_pred             CeEEEEEEecCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEe
Confidence            67899999999999999997542   68898888888777                  8999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      .......     .......++..|+| |.  ....+.++||||||++++|+++|+.||.....   .             
T Consensus       151 ~~~~~~~-----~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~-------------  209 (260)
T cd06606         151 LGDIETG-----EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN---P-------------  209 (260)
T ss_pred             ccccccc-----ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc---h-------------
Confidence            7654310     01234568888966 87  45689999999999999999999999975321   0             


Q ss_pred             HHHHHHHHh-cCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          533 MELVYSRLL-QGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       533 ~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ...+..... ......+.          .....+.+++.+|++.+|++||++.|++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~----------~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         210 MAALYKIGSSGEPPEIPE----------HLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             HHHHHhccccCCCcCCCc----------ccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence            000000000 00000000          11233446677999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.67  E-value=1.1e-16  Score=161.37  Aligned_cols=165  Identities=22%  Similarity=0.236  Sum_probs=111.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~Df  450 (614)
                      +..+...++||||+++ ++.+.+...  ...++|..+.+++.++                   |+||++++++.+||+||
T Consensus        83 ~~~~~~~~~v~e~~~~-~l~~l~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~df  159 (296)
T cd06618          83 FITDSDVFICMELMST-CLDKLLKRI--QGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDF  159 (296)
T ss_pred             eecCCeEEEEeeccCc-CHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECcc
Confidence            3446678999999865 777766542  2368888888777766                   89999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--c----CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V----ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~----~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      |+++.+.....        .....|++.|+| |.  .    ..++.++|||||||+++||++|+.||.....+.      
T Consensus       160 g~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~------  225 (296)
T cd06618         160 GISGRLVDSKA--------KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEF------  225 (296)
T ss_pred             ccchhccCCCc--------ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHH------
Confidence            99976543221        223457888966 76  2    237889999999999999999999986421110      


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                +.....+......-+.. .       .....+.+++.+|++.+|++||++.+++..
T Consensus       226 ----------~~~~~~~~~~~~~~~~~-~-------~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         226 ----------EVLTKILQEEPPSLPPN-E-------GFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             ----------HHHHHHhcCCCCCCCCC-C-------CCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence                      11111111110000000 0       112234567779999999999999999854

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.67  E-value=1.9e-16  Score=155.88  Aligned_cols=162  Identities=22%  Similarity=0.303  Sum_probs=117.6

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ++..++||||+++++|.+++.... ....+++.....++.++                  |+||++++++.++++|||++
T Consensus        71 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~  150 (258)
T cd08215          71 KGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGIS  150 (258)
T ss_pred             CCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccce
Confidence            467899999999999999997532 23568888888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........       ......|++.|+| |.  ...++.++||||+|++++|+++|+.||+....               
T Consensus       151 ~~~~~~~~-------~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~---------------  208 (258)
T cd08215         151 KVLSSTVD-------LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENL---------------  208 (258)
T ss_pred             eecccCcc-------eecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcH---------------
Confidence            87654321       1223568888976 76  56688999999999999999999999864211               


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                        .+............-+.          .....+.+++..|+..+|++||++.|++.
T Consensus       209 --~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         209 --LELALKILKGQYPPIPS----------QYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             --HHHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence              11111122211111111          11123446777999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.67  E-value=2.5e-17  Score=168.64  Aligned_cols=157  Identities=18%  Similarity=0.300  Sum_probs=112.1

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeCCC-CCeeeccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLDYD-MTAYVGDFGL  452 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld~~-~~~kl~DfGl  452 (614)
                      ...-+|.|.|..|+|..|+...+   +++.....+.+++|                    ..||+++.+ |++||+|.|+
T Consensus       116 ~~in~iTEL~TSGtLr~Y~kk~~---~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGL  192 (632)
T KOG0584|consen  116 KTINFITELFTSGTLREYRKKHR---RVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGL  192 (632)
T ss_pred             ceeeeeeecccCCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhH
Confidence            45679999999999999998643   45555556666666                    699999876 8999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      |.++...         ....+.|||.||| |. -..|++..||||||+.++||+|+..||.+-    ..-++..+....+
T Consensus       193 Atl~r~s---------~aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC----~n~AQIYKKV~SG  259 (632)
T KOG0584|consen  193 ATLLRKS---------HAKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSEC----TNPAQIYKKVTSG  259 (632)
T ss_pred             HHHhhcc---------ccceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhh----CCHHHHHHHHHcC
Confidence            9987653         2344899999988 87 778999999999999999999999999743    2222222222211


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .-++.+.. +         +.|           .+-++...|+.. .++|||+.|++.
T Consensus       260 iKP~sl~k-V---------~dP-----------evr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  260 IKPAALSK-V---------KDP-----------EVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             CCHHHhhc-c---------CCH-----------HHHHHHHHHhcC-chhccCHHHHhh
Confidence            11111110 0         011           122455688888 899999999985

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.67  E-value=8.1e-17  Score=162.85  Aligned_cols=111  Identities=24%  Similarity=0.282  Sum_probs=86.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++ ++.+.+...  ...++|.....++.++                  |+||++++++.+||+|||+++
T Consensus        88 ~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~  164 (302)
T cd07864          88 KGAFYLVFEYMDH-DLMGLLESG--LVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLAR  164 (302)
T ss_pred             CCcEEEEEcccCc-cHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccc
Confidence            3478999999987 777777643  2358888888887777                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .......      .......+++.|+| |.   ...++.++|||||||+++||++|+.||..
T Consensus       165 ~~~~~~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~  220 (302)
T cd07864         165 LYNSEES------RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQA  220 (302)
T ss_pred             cccCCcc------cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence            7654321      11223456778866 75   23568899999999999999999999974

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.67  E-value=3e-16  Score=155.72  Aligned_cols=169  Identities=20%  Similarity=0.254  Sum_probs=114.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfG  451 (614)
                      ...+..++||||+++|+|.+++...   ..+++....+++.++                  |+||+++.++ .+|++|||
T Consensus        73 ~~~~~~~~v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg  149 (268)
T cd06630          73 CEDSHFNLFVEWMAGGSVSHLLSKY---GAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFG  149 (268)
T ss_pred             ccCCeEEEEEeccCCCcHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccc
Confidence            4466789999999999999999753   257788877777766                  9999998776 59999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++.........   ........|+..|+| |.  ...++.++||||+|++++|+++|+.||........          
T Consensus       150 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~----------  216 (268)
T cd06630         150 AAARLAAKGTGA---GEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNH----------  216 (268)
T ss_pred             cccccccccccC---CccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcch----------
Confidence            998765432110   011223568899977 76  56788999999999999999999999864211100          


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          .............  +...       ...-..+.++...|+..+|++||++.|++.
T Consensus       217 ----~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         217 ----LALIFKIASATTA--PSIP-------EHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             ----HHHHHHHhccCCC--CCCc-------hhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence                0011010000000  0000       011123445778999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.67  E-value=5.5e-16  Score=151.20  Aligned_cols=126  Identities=21%  Similarity=0.299  Sum_probs=95.1

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      .+..+++.|||||||+||+|+..++.. ..+.++.....-+|.++                  |+|||+-++|++.++||
T Consensus       145 ~fet~~~~cl~meyCpGGdL~~LrqkQ-p~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDF  223 (459)
T KOG0610|consen  145 SFETDKYSCLVMEYCPGGDLHSLRQKQ-PGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDF  223 (459)
T ss_pred             eeeccceeEEEEecCCCccHHHHHhhC-CCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeec
Confidence            356678899999999999999999876 45567766555555555                  99999999999999999


Q ss_pred             ccccccCCCCCC-----------------------------C-C-------------------CCCcCcccccccccccc
Q 046036          451 GLARFLPTNVTN-----------------------------P-M-------------------KGQSNSAAVWGSIGYNM  481 (614)
Q Consensus       451 Gla~~~~~~~~~-----------------------------~-~-------------------~~~~~~~~~~gt~~y~a  481 (614)
                      -++..+....+-                             . .                   .........+||-.|.|
T Consensus       224 DLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlA  303 (459)
T KOG0610|consen  224 DLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLA  303 (459)
T ss_pred             cccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCcccccccccccccc
Confidence            987644211000                             0 0                   00122345789999966


Q ss_pred             -cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccc
Q 046036          482 -EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFA  515 (614)
Q Consensus       482 -E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~  515 (614)
                       |+  +...+.++|.|+|||++|||+.|+.||.+...
T Consensus       304 PEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~  340 (459)
T KOG0610|consen  304 PEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNN  340 (459)
T ss_pred             ceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCc
Confidence             88  66788999999999999999999999987533

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.67  E-value=1.9e-16  Score=163.83  Aligned_cols=105  Identities=24%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++ +|.+.+...     +++.....++.++                  |+||+++.++.+|++|||+++.
T Consensus        94 ~~~~lv~e~~~~-~l~~~~~~~-----l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  167 (353)
T cd07850          94 QDVYLVMELMDA-NLCQVIQMD-----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  167 (353)
T ss_pred             CcEEEEEeccCC-CHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCcccee
Confidence            457999999975 898888632     6666666665555                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .....        ......|++.|+| |.  ...++.++|||||||+++||++|+.||..
T Consensus       168 ~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~  219 (353)
T cd07850         168 AGTSF--------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPG  219 (353)
T ss_pred             CCCCC--------CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCC
Confidence            64321        1233568889976 87  66789999999999999999999999965

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.66  E-value=3.6e-17  Score=174.38  Aligned_cols=173  Identities=23%  Similarity=0.214  Sum_probs=120.9

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeCCCCCeeecccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld~~~~~kl~DfGla  453 (614)
                      -+.+|.||||++|+|-+++..+. ..+|+..+.++|+.++                    -+||||+.+++-||||||-|
T Consensus       115 ~EvllLmEyC~gg~Lvd~mn~Rl-q~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSa  193 (738)
T KOG1989|consen  115 WEVLLLMEYCKGGSLVDFMNTRL-QTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSA  193 (738)
T ss_pred             eEEEeehhhccCCcHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCccccc
Confidence            46789999999999999998654 3349999999999988                    59999999999999999998


Q ss_pred             cccCCCCCC-CCCCC-cCcccccccccc-cccc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          454 RFLPTNVTN-PMKGQ-SNSAAVWGSIGY-NMEW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       454 ~~~~~~~~~-~~~~~-~~~~~~~gt~~y-~aE~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      .-.....+. ..... .......-|+-| .||.     +..+++|+|||++||+||-|+....||++.-.  ..+. -..
T Consensus       194 tt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~--laIl-ng~  270 (738)
T KOG1989|consen  194 TTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK--LAIL-NGN  270 (738)
T ss_pred             ccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc--eeEE-ecc
Confidence            533222110 00000 000123468889 5586     56899999999999999999999999986311  1000 000


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                      -.+|..                    +.    ..+.+   ..++..|++++|++||++-||+..+.+++...
T Consensus       271 Y~~P~~--------------------p~----ys~~l---~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~  315 (738)
T KOG1989|consen  271 YSFPPF--------------------PN----YSDRL---KDLIRTMLQPNPDERPNIYQVLEEIFELANKP  315 (738)
T ss_pred             ccCCCC--------------------cc----HHHHH---HHHHHHHhccCcccCCCHHHHHHHHHHHhcCC
Confidence            011110                    00    12333   34556889999999999999999998887654

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.66  E-value=2e-16  Score=157.86  Aligned_cols=112  Identities=26%  Similarity=0.320  Sum_probs=90.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.+++.... ...+++..+..++.++                  |+||++++++.+|++|||++
T Consensus        64 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~  142 (277)
T cd05577          64 TKDDLCLVMTLMNGGDLKYHIYNVG-EPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLA  142 (277)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHcC-cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcch
Confidence            4567899999999999999997543 2357888887776666                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +......        ......|+..|+| |+  ...++.++|||||||+++||++|+.||..
T Consensus       143 ~~~~~~~--------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  196 (277)
T cd05577         143 VELKGGK--------KIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQ  196 (277)
T ss_pred             hhhccCC--------ccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCC
Confidence            8654321        1223467888977 87  55688999999999999999999999965

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.66  E-value=3.2e-16  Score=159.08  Aligned_cols=115  Identities=21%  Similarity=0.241  Sum_probs=87.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+++ +|.+++...  ...+++.+...++.++                  |+||+++.++.+|++|||++.
T Consensus        91 ~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~  167 (310)
T cd07865          91 KGSFYLVFEFCEH-DLAGLLSNK--NVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             CceEEEEEcCCCc-CHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcc
Confidence            3456999999985 888888653  2357888888887777                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .........   ........++..|+| |+   ...++.++|||||||+++||+||+.||...
T Consensus       168 ~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~  227 (310)
T cd07865         168 AFSLSKNSK---PNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGN  227 (310)
T ss_pred             cccCCcccC---CCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            765432210   011233567888977 86   234688999999999999999999998653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.66  E-value=1.5e-16  Score=163.42  Aligned_cols=191  Identities=18%  Similarity=0.192  Sum_probs=115.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+++.++||||++ |+|.+++...   ..+++.....++.++                  |+||+++.++.+|++|||+
T Consensus        90 ~~~~~~~lv~e~~~-~~l~~~l~~~---~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~  165 (335)
T PTZ00024         90 VEGDFINLVMDIMA-SDLKKVVDRK---IRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGL  165 (335)
T ss_pred             ecCCcEEEEEeccc-cCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccc
Confidence            34678899999997 6999998643   247777777777766                  8999999999999999999


Q ss_pred             ccccCCCCCCCC-------CCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHH
Q 046036          453 ARFLPTNVTNPM-------KGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLH  521 (614)
Q Consensus       453 a~~~~~~~~~~~-------~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~  521 (614)
                      ++..........       ..........+++.|+| |+   ...++.++||||+||+++||+||+.||........ +.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~-~~  244 (335)
T PTZ00024        166 ARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQ-LG  244 (335)
T ss_pred             eeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HH
Confidence            986652111000       00111223457888976 76   23468899999999999999999999875322111 11


Q ss_pred             HHHHh---hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          522 NFCEM---ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       522 ~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .....   ..+....+..+  +........................+.++...|++.+|++||++.|++.
T Consensus       245 ~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        245 RIFELLGTPNEDNWPQAKK--LPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             HHHHHhCCCchhhCcchhh--cccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence            11110   00000000000  0000000000001111111122334567888999999999999999985

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.66  E-value=4e-16  Score=153.90  Aligned_cols=161  Identities=19%  Similarity=0.221  Sum_probs=113.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      .+++..++||||+++|+|.+++...   ..+++.....++.++                  |+||++++++.++++|||+
T Consensus        70 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~  146 (258)
T cd05578          70 QDEENMYLVVDLLLGGDLRYHLSQK---VKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNI  146 (258)
T ss_pred             cCCCeEEEEEeCCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeeccc
Confidence            3466789999999999999999753   357787777777776                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......        ......|+..|+| |+  ....+.++||||||++++|+++|+.||......   .         
T Consensus       147 ~~~~~~~~--------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~---------  206 (258)
T cd05578         147 ATKVTPDT--------LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT---I---------  206 (258)
T ss_pred             ccccCCCc--------cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc---H---------
Confidence            87664432        1223568888966 77  556789999999999999999999999753221   0         


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCH--HHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGV--REMV  587 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm--~ev~  587 (614)
                         .+.+...........+..          ....+.++..+|++.+|++||++  .|+.
T Consensus       207 ---~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         207 ---RDQIRAKQETADVLYPAT----------WSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             ---HHHHHHHhccccccCccc----------CcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence               011111111111111111          11334456678999999999999  5543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.66  E-value=1e-16  Score=155.97  Aligned_cols=109  Identities=19%  Similarity=0.153  Sum_probs=87.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.++++|||.
T Consensus        55 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~  131 (237)
T cd05576          55 VSEDSVFLVLQHAEGGKLWSHISKF---LNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSR  131 (237)
T ss_pred             ecCCeEEEEEecCCCCCHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccc
Confidence            3456789999999999999998753   248888888777766                  9999999999999999998


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +.......          ....++..|+| |.  ...++.++||||+||+++|+++|+.|+..
T Consensus       132 ~~~~~~~~----------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~  184 (237)
T cd05576         132 WSEVEDSC----------DGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVEC  184 (237)
T ss_pred             hhcccccc----------ccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhc
Confidence            86554321          12345677866 77  46688999999999999999999988653

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.65  E-value=6.1e-16  Score=154.68  Aligned_cols=182  Identities=18%  Similarity=0.147  Sum_probs=116.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||++ ++|.+++....  ..+++..+.+++.++                  |+||++++++.+||+|||++
T Consensus        69 ~~~~~~~v~e~~~-~~l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~  145 (282)
T cd07829          69 TERKLYLVFEYCD-MDLKKYLDKRP--GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLA  145 (282)
T ss_pred             cCCceEEEecCcC-cCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcc
Confidence            3467899999999 59999998542  358888888887777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cC-CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......       ......++..|+| |+  .. .++.++|||||||+++|+++|+.||......  ...........
T Consensus       146 ~~~~~~~~-------~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~--~~~~~~~~~~~  216 (282)
T cd07829         146 RAFGIPLR-------TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEI--DQLFKIFQILG  216 (282)
T ss_pred             cccCCCcc-------ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHH--HHHHHHHHHhC
Confidence            87654321       1223456677866 76  33 7889999999999999999999998653211  11111110100


Q ss_pred             CChHHHHHHHHhc------CcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQ------GVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....+. .+.+..      ........  .........-..+.+++..|++.+|++||++.+|+.
T Consensus       217 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         217 TPTEES-WPGVTKLPDYKPTFPKFPPK--DLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             CCcHHH-HHhhcccccccccccccCcc--chHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            000000 000000      00000000  000111111345677888999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.65  E-value=4.9e-16  Score=158.19  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=86.9

Q ss_pred             CceeEEecccCCCchhhhccCCC--CCcccCHHHHHHHHhhC------------------CCceeeCC----CCCeeecc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNE--ATRRLDLAEGLKIAVDI------------------PSNVLLDY----DMTAYVGD  449 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~--~~~~l~~~~~~~ia~~i------------------~~NILld~----~~~~kl~D  449 (614)
                      +..++||||+++ ++.+++....  ....++......++.++                  |+||+++.    ++.+|++|
T Consensus        77 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~D  155 (316)
T cd07842          77 KSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGD  155 (316)
T ss_pred             ceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECC
Confidence            678999999986 7777664322  12357777777776666                  89999999    89999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCccc
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMF  514 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~  514 (614)
                      ||+++........    ........+++.|+| |.   ...++.++|||||||+++||++|+.||....
T Consensus       156 fg~~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  220 (316)
T cd07842         156 LGLARLFNAPLKP----LADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGRE  220 (316)
T ss_pred             CccccccCCCccc----ccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCc
Confidence            9999876543221    112234578899976 86   2457899999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.65  E-value=1.6e-16  Score=160.03  Aligned_cols=114  Identities=20%  Similarity=0.204  Sum_probs=83.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC-CCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY-DMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~-~~~~kl~DfG  451 (614)
                      ..++..++||||++ |+|.+++.... ...+++.....++.++                  |+||+++. +..+|++|||
T Consensus        71 ~~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg  148 (294)
T PLN00009         71 HSEKRLYLVFEYLD-LDLKKHMDSSP-DFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFG  148 (294)
T ss_pred             ecCCeEEEEEeccc-ccHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccc
Confidence            34567899999997 58888875432 2234555555554444                  99999985 5678999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +++......       .......|++.|+| |+   ...++.++|||||||+++||+||+.||...
T Consensus       149 ~~~~~~~~~-------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~  207 (294)
T PLN00009        149 LARAFGIPV-------RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGD  207 (294)
T ss_pred             cccccCCCc-------cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            997654321       11233467889977 86   245788999999999999999999999753

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.65  E-value=2.6e-16  Score=158.15  Aligned_cols=108  Identities=27%  Similarity=0.390  Sum_probs=89.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||++++++.+||+|||++
T Consensus        72 ~~~~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~  148 (290)
T cd05580          72 DDSNLYLVMEYVPGGELFSHLRKS---GRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFA  148 (290)
T ss_pred             cCCeEEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCc
Confidence            456789999999999999999754   357787777776666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +.....          .....|++.|+| |.  ....+.++||||||++++||++|+.||..
T Consensus       149 ~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  200 (290)
T cd05580         149 KRVKGR----------TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFD  200 (290)
T ss_pred             cccCCC----------CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence            876543          223568899966 76  55678899999999999999999999864

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.65  E-value=3.1e-16  Score=157.58  Aligned_cols=112  Identities=22%  Similarity=0.337  Sum_probs=87.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+...++||||+++|+|.+++...   ..+++.....++.++                  |+||++++++.+||+|||++
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~  152 (290)
T cd05613          76 TDTKLHLILDYINGGELFTHLSQR---ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS  152 (290)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccc
Confidence            456678999999999999999753   246676666555544                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-c---CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V---ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~---~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +.......      .......|+..|+| |+ .   ..++.++|||||||+++||+||+.||..
T Consensus       153 ~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~  210 (290)
T cd05613         153 KEFHEDEV------ERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTV  210 (290)
T ss_pred             eecccccc------cccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCc
Confidence            86543321      11224568889966 77 2   3467899999999999999999999863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.65  E-value=1.4e-16  Score=163.92  Aligned_cols=161  Identities=21%  Similarity=0.246  Sum_probs=108.0

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCCCC--cccCHHHHHHHHhhC------------CCceee-CCCCCeeecccccc
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNEAT--RRLDLAEGLKIAVDI------------PSNVLL-DYDMTAYVGDFGLA  453 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~--~~l~~~~~~~ia~~i------------~~NILl-d~~~~~kl~DfGla  453 (614)
                      .+..+.+.++|||++.+|-+.+.+......  ..-.|..-+-+|...            |+|||+ ++.++.+++|||.+
T Consensus       384 v~~~~~~~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a  463 (612)
T KOG0603|consen  384 VYEDGKEIYLVMELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFW  463 (612)
T ss_pred             eecCCceeeeeehhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechh
Confidence            355677889999999999988888654311  111243333333333            999999 58899999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.....          ....+-|..|.| |+  ...+++++|+||+||+||||+||+.||.....+ ..+...+.  .+ 
T Consensus       464 ~~~~~~----------~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~ei~~~i~--~~-  529 (612)
T KOG0603|consen  464 SELERS----------CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-IEIHTRIQ--MP-  529 (612)
T ss_pred             hhCchh----------hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-HHHHHhhc--CC-
Confidence            987653          223456778865 88  678999999999999999999999999764333 11111110  10 


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                            .+++.+.+..+   ++.-.|++.+|.+||+|.|+..
T Consensus       530 ----------------------~~s~~vS~~AK---dLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  530 ----------------------KFSECVSDEAK---DLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             ----------------------ccccccCHHHH---HHHHHhccCChhhCcChhhhcc
Confidence                                  00011122222   2334678899999999998874

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=3.8e-16  Score=153.45  Aligned_cols=160  Identities=18%  Similarity=0.225  Sum_probs=114.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++++|.+++...   ..++|..+..++.++                  |+||+++.++.+|++|||++
T Consensus        70 ~~~~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~  146 (254)
T cd06627          70 TSDSLYIILEYAENGSLRQIIKKF---GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVA  146 (254)
T ss_pred             eCCEEEEEEecCCCCcHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccc
Confidence            346789999999999999999753   358888888877776                  89999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........       ......|+..|+| |+  ...++.++||||+|++++|+++|+.|+.....    ...        
T Consensus       147 ~~~~~~~~-------~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~----~~~--------  207 (254)
T cd06627         147 TKLNDVSK-------DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNP----MAA--------  207 (254)
T ss_pred             eecCCCcc-------cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccH----HHH--------
Confidence            87654332       1234568889976 76  45578999999999999999999999864211    000        


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          ..+ ...... .....         .....+..+..+|++.+|++||++.|++.
T Consensus       208 ----~~~-~~~~~~-~~~~~---------~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         208 ----LFR-IVQDDH-PPLPE---------GISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             ----HHH-HhccCC-CCCCC---------CCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence                000 000000 00000         01123345667999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.64  E-value=2.6e-16  Score=159.66  Aligned_cols=110  Identities=21%  Similarity=0.223  Sum_probs=87.0

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++ +|.+++...  ...++|..+..++.++                  |+||++++++.+|++|||+++.
T Consensus        81 ~~~~lv~e~~~~-~l~~~l~~~--~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~  157 (309)
T cd07845          81 DSIFLVMEYCEQ-DLASLLDNM--PTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLART  157 (309)
T ss_pred             CeEEEEEecCCC-CHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeee
Confidence            457999999985 898888653  2458888888887777                  8999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ......       ..+...+++.|+| |.   ...++.++||||+||++|||++|+.||...
T Consensus       158 ~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~  212 (309)
T cd07845         158 YGLPAK-------PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGK  212 (309)
T ss_pred             cCCccC-------CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            654321       1222345788966 86   245789999999999999999999999753

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=2.2e-16  Score=162.20  Aligned_cols=168  Identities=18%  Similarity=0.239  Sum_probs=114.9

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC-CCCCeeecc
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD-YDMTAYVGD  449 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld-~~~~~kl~D  449 (614)
                      .+.++++.-+.||-+|+|||.+.|..+.++-.=...+.--+..+|                  -.|||++ -.|.+||+|
T Consensus       640 s~senGf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISD  719 (1226)
T KOG4279|consen  640 SVSENGFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISD  719 (1226)
T ss_pred             ccCCCCeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecc
Confidence            366778889999999999999999865432111333333333333                  7999997 568999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      ||.+|.+..-.       ..+.+.-||.-||| |+    ...|...+|||||||.+.||.|||+||.+.-.-  .     
T Consensus       720 FGTsKRLAgin-------P~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgsp--q-----  785 (1226)
T KOG4279|consen  720 FGTSKRLAGIN-------PCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSP--Q-----  785 (1226)
T ss_pred             cccchhhccCC-------ccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCCh--h-----
Confidence            99999776542       23556889999988 87    456889999999999999999999999763210  0     


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              ..++.-   +.+...|+-    .+.+.+   +.-...++|..++|.+||++.+++.
T Consensus       786 --------AAMFkV---GmyKvHP~i----Peelsa---eak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  786 --------AAMFKV---GMYKVHPPI----PEELSA---EAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             --------Hhhhhh---cceecCCCC----cHHHHH---HHHHHHHHHcCCCcccCccHHHhcc
Confidence                    011111   111112211    111122   2334678999999999999998874

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.64  E-value=6.2e-16  Score=158.10  Aligned_cols=163  Identities=20%  Similarity=0.212  Sum_probs=117.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC----CCeee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD----MTAYV  447 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~----~~~kl  447 (614)
                      +...+..++|||+|.+|+|++.+...    .++......++.++                  |+|+|+...    +..|+
T Consensus       105 ~e~~~~~~lvmEL~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~  180 (382)
T KOG0032|consen  105 FEDPDSVYLVMELCEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKL  180 (382)
T ss_pred             EEcCCeEEEEEEecCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEE
Confidence            34566889999999999999999764    26776666666666                  999999754    46999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      +|||+++.....        ......+||++|+| |.  ...++..+||||.||++|.|++|..||........      
T Consensus       181 ~DFGla~~~~~~--------~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~------  246 (382)
T KOG0032|consen  181 IDFGLAKFIKPG--------ERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEI------  246 (382)
T ss_pred             eeCCCceEccCC--------ceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHH------
Confidence            999999987762        23567899999966 87  47899999999999999999999999986432211      


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                 ....+...+....+..+...+.+.+       ....++..||.+|+|+.++++
T Consensus       247 -----------~~~i~~~~~~f~~~~w~~is~~akd-------~i~~ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  247 -----------FLAILRGDFDFTSEPWDDISESAKD-------FIRKLLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             -----------HHHHHcCCCCCCCCCccccCHHHHH-------HHHHhcccCcccCCCHHHHhc
Confidence                       1122233332222222233333333       334667889999999999887

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=2e-16  Score=159.85  Aligned_cols=163  Identities=21%  Similarity=0.180  Sum_probs=114.2

Q ss_pred             CCCCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeee
Q 046036          386 SSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYV  447 (614)
Q Consensus       386 ~~~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl  447 (614)
                      +.++|-.+...+||||||-| |-.+.|.-.+  +++.......|+.|+                  +.||||++.+.+|+
T Consensus        91 YkgCyLre~TaWLVMEYClG-SAsDlleVhk--KplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKL  167 (948)
T KOG0577|consen   91 YKGCYLREHTAWLVMEYCLG-SASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKL  167 (948)
T ss_pred             ccceeeccchHHHHHHHHhc-cHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeee
Confidence            55566667778999999987 8777765322  246666666666665                  89999999999999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLH  521 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~  521 (614)
                      +|||-|.+..+..           .++|||.||| |+     .+.|+-|+||||+||+..||.-+++|+-.+..      
T Consensus       168 aDFGSAsi~~PAn-----------sFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNA------  230 (948)
T KOG0577|consen  168 ADFGSASIMAPAN-----------SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA------  230 (948)
T ss_pred             ccccchhhcCchh-----------cccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchH------
Confidence            9999998876542           4899999988 87     57999999999999999999999999754321      


Q ss_pred             HHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          522 NFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                 ...+........ + .-..+.|++.+..       ..-.|++.-|.+|||.++.++
T Consensus       231 -----------MSALYHIAQNes-P-tLqs~eWS~~F~~-------Fvd~CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  231 -----------MSALYHIAQNES-P-TLQSNEWSDYFRN-------FVDSCLQKIPQERPTSEELLK  277 (948)
T ss_pred             -----------HHHHHHHHhcCC-C-CCCCchhHHHHHH-------HHHHHHhhCcccCCcHHHHhh
Confidence                       111111111110 0 0012233333333       334788999999999887764

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.64  E-value=2.9e-16  Score=151.58  Aligned_cols=192  Identities=15%  Similarity=0.125  Sum_probs=123.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCC-cccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEAT-RRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~-~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ....++||||+.. +|..++...... ..++-.....++.|+                  |.|||+++++..|++|||+|
T Consensus        89 ~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlA  167 (323)
T KOG0594|consen   89 IGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLA  167 (323)
T ss_pred             cceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchH
Confidence            3478899999999 999999764321 345555556666665                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +......       ...+..++|.+|-| |.   ...|+...|+||+||++.||++++.-|.+.....+...-+-....|
T Consensus       168 ra~~ip~-------~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP  240 (323)
T KOG0594|consen  168 RAFSIPM-------RTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTP  240 (323)
T ss_pred             HHhcCCc-------ccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCC
Confidence            9766432       23567889999955 87   4579999999999999999999888787654322111111112222


Q ss_pred             CC--hHHHH-HHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH--HHHh
Q 046036          530 ES--VMELV-YSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME--MNVI  593 (614)
Q Consensus       530 ~~--~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~--L~~i  593 (614)
                      ..  ++.+. -+.....+...+ .................++...|++.+|.+|.|++.++.+  +..+
T Consensus       241 ~e~~Wp~v~~~~~~k~~f~~~~-~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~  308 (323)
T KOG0594|consen  241 NEKDWPGVSSLPDYKAPFPKWP-GPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSEL  308 (323)
T ss_pred             CccCCCCccccccccccCcCCC-CccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccc
Confidence            11  11110 000000111000 0111112222222456678889999999999999999875  4444

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=4.2e-16  Score=141.35  Aligned_cols=173  Identities=20%  Similarity=0.215  Sum_probs=121.7

Q ss_pred             chHHHHHhhcCCCCCCCCCCceeEEecccCCCchhhhccCCC---CCcccCHHHHHHHHhhC--------------CCce
Q 046036          375 PYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNE---ATRRLDLAEGLKIAVDI--------------PSNV  437 (614)
Q Consensus       375 ~~~~l~~at~~~~~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~---~~~~l~~~~~~~ia~~i--------------~~NI  437 (614)
                      .+.+|.+..    .++.+....||++||.++|+++..|.+..   -....+|....++|-..              |+|+
T Consensus        80 ~hpnilrlY----~~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenl  155 (281)
T KOG0580|consen   80 RHPNILRLY----GYFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENL  155 (281)
T ss_pred             CCccHHhhh----hheeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHh
Confidence            445555553    24455677899999999999999998432   22345666666655443              9999


Q ss_pred             eeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCccc
Q 046036          438 LLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMF  514 (614)
Q Consensus       438 Lld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~  514 (614)
                      |++.++..|++|||-+-.-+.         ......|||.-|.| |.  ....+.+.|+|+.||+.+|++.|.+||+...
T Consensus       156 Llg~~~~lkiAdfGwsV~~p~---------~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~  226 (281)
T KOG0580|consen  156 LLGSAGELKIADFGWSVHAPS---------NKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS  226 (281)
T ss_pred             ccCCCCCeeccCCCceeecCC---------CCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh
Confidence            999999999999999865443         23556899999977 87  6788999999999999999999999998643


Q ss_pred             ccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .+                  ....++...--..|   ..+...       ..++...|+..+|.+|.+..||++
T Consensus       227 ~~------------------etYkrI~k~~~~~p---~~is~~-------a~dlI~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  227 HS------------------ETYKRIRKVDLKFP---STISGG-------AADLISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             hH------------------HHHHHHHHccccCC---cccChh-------HHHHHHHHhccCccccccHHHHhh
Confidence            21                  11122222111111   111111       223456788999999999999885

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.64  E-value=3.6e-16  Score=154.70  Aligned_cols=167  Identities=19%  Similarity=0.253  Sum_probs=111.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..|||+|||..|.+...=-+   ...+...+..+|..++                  |+|+||++++++||+|||.+
T Consensus       181 ~s~~~YlVley~s~G~v~w~p~d---~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs  257 (576)
T KOG0585|consen  181 ESDKLYLVLEYCSKGEVKWCPPD---KPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISDFGVS  257 (576)
T ss_pred             ccCceEEEEEeccCCccccCCCC---cccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeecccee
Confidence            45678999999999987654322   2237777777777766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--c----CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V----ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~----~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ..........  ........+|||.|+| |.  .    .....+.||||.||+||.++.|+.||-+.+            
T Consensus       258 ~~~~~~~~~~--~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~------------  323 (576)
T KOG0585|consen  258 NEFPQGSDEG--SDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDF------------  323 (576)
T ss_pred             eecccCCccc--cHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccch------------
Confidence            8764331110  0112334789999977 87  2    134578899999999999999999997532            


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                           ..+..+..+........ .        .+.-+.+-.+.+..+.+||++|.+..+|...
T Consensus       324 -----~~~l~~KIvn~pL~fP~-~--------pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~H  372 (576)
T KOG0585|consen  324 -----ELELFDKIVNDPLEFPE-N--------PEINEDLKDLIKRLLEKDPEQRITLPDIKLH  372 (576)
T ss_pred             -----HHHHHHHHhcCcccCCC-c--------ccccHHHHHHHHHHhhcChhheeehhhheec
Confidence                 22333333333221110 0        0112222234445577999999998888754

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.64  E-value=5.5e-16  Score=159.67  Aligned_cols=174  Identities=18%  Similarity=0.165  Sum_probs=112.7

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++|+||+ +++|.+++..    ..+++.....++.++                  |+||++++++.+|++|||++...
T Consensus        94 ~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~  168 (343)
T cd07851          94 DVYLVTHLM-GADLNNIVKC----QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHT  168 (343)
T ss_pred             cEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccc
Confidence            479999999 5699999864    248888888877766                  89999999999999999999865


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      ...          .....++..|+| |.   ...++.++|||||||+++|++||+.||....... .+...... .....
T Consensus       169 ~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~-~~~~i~~~-~~~~~  236 (343)
T cd07851         169 DDE----------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHID-QLKRIMNL-VGTPD  236 (343)
T ss_pred             ccc----------ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHh-cCCCC
Confidence            432          223467888966 76   2467899999999999999999999996532210 11111110 00000


Q ss_pred             HHH--------HHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          533 MEL--------VYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       533 ~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .+.        ....+.. ....  .+..+..........+.++...|++.+|++|||+.||+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         237 EELLQKISSESARNYIQS-LPQM--PKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             HHHHhhccchhHHHHHHh-cccc--CCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence            011        0111110 0000  011111111112345667888999999999999999875

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.64  E-value=7.1e-16  Score=156.76  Aligned_cols=158  Identities=22%  Similarity=0.170  Sum_probs=109.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+. |++.+++...  ...++|.++..++.++                  |+||++++++.+|++|||+
T Consensus        91 ~~~~~~~lv~e~~~-~~l~~~l~~~--~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~  167 (313)
T cd06633          91 LKEHTAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGS  167 (313)
T ss_pred             EeCCEEEEEEecCC-CCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCC
Confidence            34567899999996 5888887643  2358888888777666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      +.....           .....|+..|+| |+     ...++.++|||||||+++||++|+.|+.....  .....    
T Consensus       168 ~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~--~~~~~----  230 (313)
T cd06633         168 ASKSSP-----------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALY----  230 (313)
T ss_pred             CcccCC-----------CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh--HHHHH----
Confidence            864322           223568888966 76     24678899999999999999999999865321  00000    


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                 ..........+..  .+       ...+.++...|++.+|.+||++.+++.
T Consensus       231 -----------~~~~~~~~~~~~~--~~-------~~~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         231 -----------HIAQNDSPTLQSN--EW-------TDSFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             -----------HHHhcCCCCCCcc--cc-------CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                       0000000000000  01       112345667999999999999999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.64  E-value=6.1e-16  Score=167.82  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=79.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCC-----------------cccCHHHHHHHHhhC------------------CC
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEAT-----------------RRLDLAEGLKIAVDI------------------PS  435 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~-----------------~~l~~~~~~~ia~~i------------------~~  435 (614)
                      ..++..++||||+++|+|.++++.....                 ....+.....|+.++                  |+
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~  284 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQ  284 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHH
Confidence            4567789999999999999998753210                 001111222343333                  99


Q ss_pred             ceeeCC-CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cC----------------------CCCc
Q 046036          436 NVLLDY-DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA----------------------RYQH  489 (614)
Q Consensus       436 NILld~-~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~----------------------~~~~  489 (614)
                      |||+++ ++.+||+|||+|+.+.....      .......|+++|+| |.  ..                      .++.
T Consensus       285 NILl~~~~~~~KL~DFGlA~~l~~~~~------~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~  358 (566)
T PLN03225        285 NIIFSEGSGSFKIIDLGAAADLRVGIN------YIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPD  358 (566)
T ss_pred             HEEEeCCCCcEEEEeCCCccccccccc------cCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCC
Confidence            999996 57899999999986644322      12345678999977 73  11                      2345


Q ss_pred             cCceeehhHHHHHHHhCCCCCC
Q 046036          490 KGKGYSCGILLLEIMTGKRPTD  511 (614)
Q Consensus       490 k~DVySfGvvllElltG~~p~~  511 (614)
                      ++|||||||++|||+++..|++
T Consensus       359 k~DVwSlGviL~el~~~~~~~~  380 (566)
T PLN03225        359 RFDIYSAGLIFLQMAFPNLRSD  380 (566)
T ss_pred             CcccHHHHHHHHHHHhCcCCCc
Confidence            6799999999999999877654

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.64  E-value=1.2e-16  Score=160.43  Aligned_cols=165  Identities=22%  Similarity=0.216  Sum_probs=107.3

Q ss_pred             CCCceeEEecccCCCchhh---hccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecc
Q 046036          392 GNDFKALAFEFMPNGSLES---WLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~---~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~D  449 (614)
                      .++..++||||++. ++.+   .+... ....+++....+++.++                   |+||+++.++.+|++|
T Consensus        74 ~~~~~~~~~e~~~~-~l~~l~~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~d  151 (288)
T cd06616          74 REGDCWICMELMDI-SLDKFYKYVYEV-LKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCD  151 (288)
T ss_pred             cCCcEEEEEecccC-CHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEee
Confidence            35667899999885 5444   33322 12457777776665554                   8999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--c---CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V---ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~---~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      ||+++.......        .....|++.|+| |+  .   ..++.++|||||||+++|+++|+.||.....    .   
T Consensus       152 fg~~~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~---  216 (288)
T cd06616         152 FGISGQLVDSIA--------KTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS----V---  216 (288)
T ss_pred             cchhHHhccCCc--------cccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch----H---
Confidence            999976543221        223468888966 76  2   2688999999999999999999999864210    0   


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                               .+.+........   +.......   ......+.+++..|++.+|++|||+.||++
T Consensus       217 ---------~~~~~~~~~~~~---~~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         217 ---------FDQLTQVVKGDP---PILSNSEE---REFSPSFVNFINLCLIKDESKRPKYKELLE  266 (288)
T ss_pred             ---------HHHHhhhcCCCC---CcCCCcCC---CccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                     011111111000   00000000   112234556777999999999999999986

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.64  E-value=4.4e-16  Score=159.44  Aligned_cols=122  Identities=20%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++.... ...+++.....++.++                  |+||+++.++.+|++|||.
T Consensus        69 ~~~~~~~~v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~  147 (328)
T cd08226          69 TTGSWLWVISPFMAYGSANSLLKTYF-PEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSH  147 (328)
T ss_pred             ecCCceEEEEecccCCCHHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHH
Confidence            34667899999999999999987542 2347787777776666                  9999999999999999987


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--c--CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +.....................++..|+| |+  .  ..++.++|||||||+++||++|+.||...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~  213 (328)
T cd08226         148 LYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDM  213 (328)
T ss_pred             HhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            54332211100000000111234566866 77  2  34789999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.63  E-value=4.4e-17  Score=178.56  Aligned_cols=119  Identities=26%  Similarity=0.355  Sum_probs=86.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeeccccccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      .++..++.||||++|+|.+.+...+ ....++-..-.+++.|+              |.||+||.++..|.+|||-|..+
T Consensus      1305 HRekv~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki 1384 (1509)
T KOG4645|consen 1305 HREKVYIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKI 1384 (1509)
T ss_pred             cHHHHHHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEe
Confidence            4677899999999999999997543 11122222223344444              99999999999999999999876


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc-c----CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW-V----ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~----~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ...... +  ........||+.||| |. +    ....-+.||||+|||++||+||++||...
T Consensus      1385 ~~~~~~-~--~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~ 1444 (1509)
T KOG4645|consen 1385 KNNAQT-M--PGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAEL 1444 (1509)
T ss_pred             cCchhc-C--CHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhc
Confidence            544211 0  112335789999988 87 2    23345789999999999999999999764

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.63  E-value=8.3e-16  Score=157.57  Aligned_cols=189  Identities=17%  Similarity=0.124  Sum_probs=120.3

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++ +|.++++...   .+++..+..++.++                  |.||+++.++.++++|||++..
T Consensus        77 ~~~~lv~e~~~~-~l~~~l~~~~---~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~  152 (330)
T cd07834          77 NDVYIVTELMET-DLHKVIKSPQ---PLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARG  152 (330)
T ss_pred             cceEEEecchhh-hHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEe
Confidence            357999999995 8999997532   68888888877777                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cC-CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......    ........+++.|+| |+  .. .++.++|||||||+++||++|+.||......  .............
T Consensus       153 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~~  226 (330)
T cd07834         153 VDPDEDE----KGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYI--DQLNLIVEVLGTP  226 (330)
T ss_pred             ecccccc----cccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHH--HHHHHHHHhcCCC
Confidence            6544211    011233567888966 77  34 7889999999999999999999999753221  1111111101000


Q ss_pred             hHH--------HHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH--HHHhHH
Q 046036          532 VME--------LVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME--MNVIKE  595 (614)
Q Consensus       532 ~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~--L~~i~~  595 (614)
                      ..+        .....+...   .......+..........+.++...|++.+|++||++.+++..  +++++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         227 SEEDLKFITSEKARNYLKSL---PKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             ChhHhhhccccchhhHHhhc---ccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence            000        000011100   0000011111111123345678889999999999999999973  655544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=1.4e-15  Score=150.56  Aligned_cols=113  Identities=24%  Similarity=0.302  Sum_probs=88.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+++|+|.+++....   .+++....+++.++                  |+||+++.++.++|+|||+++
T Consensus        78 ~~~~~~v~e~~~~~~L~~~~~~~~---~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  154 (264)
T cd06653          78 EKKLSIFVEYMPGGSIKDQLKAYG---ALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (264)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcccccc
Confidence            345789999999999999987532   46777777776666                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ........    ........|+..|+| |+  ....+.++|||||||+++|+++|+.||..
T Consensus       155 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  211 (264)
T cd06653         155 RIQTICMS----GTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAE  211 (264)
T ss_pred             cccccccc----CccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCc
Confidence            65321110    011234568899977 87  55678999999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.62  E-value=1.1e-15  Score=156.63  Aligned_cols=112  Identities=23%  Similarity=0.240  Sum_probs=87.5

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++++||++ ++|.+++...   ..+++..+..++.++                  |+||++++++.+||+|||+++.
T Consensus        79 ~~~~~~~e~~~-~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~  154 (332)
T cd07857          79 NELYLYEELME-ADLHQIIRSG---QPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARG  154 (332)
T ss_pred             CcEEEEEeccc-CCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCcee
Confidence            45789999997 5999998643   358888888887777                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .......   .........||+.|+| |+   ...++.++|||||||+++|+++|+.||..
T Consensus       155 ~~~~~~~---~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~  212 (332)
T cd07857         155 FSENPGE---NAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKG  212 (332)
T ss_pred             ccccccc---ccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCC
Confidence            6533211   0011234578999966 86   24678999999999999999999999875

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.62  E-value=7.9e-16  Score=158.43  Aligned_cols=182  Identities=18%  Similarity=0.229  Sum_probs=111.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC-CCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY-DMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~-~~~~kl~DfGla  453 (614)
                      ....++||||++ ++|.+++...    .+++.....++.++                  |+||+++. +..+|++|||++
T Consensus        88 ~~~~~lv~e~~~-~~L~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~  162 (342)
T cd07854          88 LNSVYIVQEYME-TDLANVLEQG----PLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLA  162 (342)
T ss_pred             cceEEEEeeccc-ccHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccc
Confidence            456799999998 5999888532    47777777776666                  89999984 567899999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.+......    ........|+..|+| |.   ...++.++|||||||+++||++|+.||....... ....... ..+
T Consensus       163 ~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~-~~~~~~~-~~~  236 (342)
T cd07854         163 RIVDPHYSH----KGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELE-QMQLILE-SVP  236 (342)
T ss_pred             eecCCcccc----ccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH-hcC
Confidence            865432111    011123467888966 86   3567889999999999999999999997532211 1111111 111


Q ss_pred             CChH-------HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVM-------ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....       ......+....  ....++ ...........+.++...|++.+|++|||+.|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         237 VVREEDRNELLNVIPSFVRNDG--GEPRRP-LRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             CCChHHhhhhhhhhhhhhhhcc--cccCCC-HHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence            1100       11111111000  000011 11111112234556788999999999999999984

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.62  E-value=1.2e-15  Score=148.56  Aligned_cols=161  Identities=27%  Similarity=0.269  Sum_probs=114.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+++|+|.+++....   .+++.....++.++                  |+||++++++.++++|||.+.
T Consensus        59 ~~~~~l~~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~  135 (244)
T smart00220       59 EDKLYLVMEYCDGGDLFDLLKKRG---RLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLAR  135 (244)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEcccccee
Confidence            467899999999999999997542   27777777776666                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ......        ......|++.|+| |.  ...++.++||||||++++|+++|+.||..... .              
T Consensus       136 ~~~~~~--------~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~-~--------------  192 (244)
T smart00220      136 QLDPGG--------LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQ-L--------------  192 (244)
T ss_pred             eecccc--------ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc-H--------------
Confidence            765432        1234568888976 76  56788899999999999999999999864211 0              


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       ....+..........+ ..       ......+.+++.+|+..+|++||++.++++
T Consensus       193 -~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      193 -LELFKKIGKPKPPFPP-PE-------WKISPEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             -HHHHHHHhccCCCCcc-cc-------ccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence             1111111111110000 00       002234556888999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.5e-16  Score=153.33  Aligned_cols=185  Identities=17%  Similarity=0.161  Sum_probs=113.6

Q ss_pred             CceeEEecccCCCchhhhccCCC-CCcccCHH----HHHHHHhhC--------------CCceeeCCC-CCeeecccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNE-ATRRLDLA----EGLKIAVDI--------------PSNVLLDYD-MTAYVGDFGLA  453 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~----~~~~ia~~i--------------~~NILld~~-~~~kl~DfGla  453 (614)
                      -...|||||||. +|+++++... ....++-.    ...+|..++              |.|+|+|.+ +..||||||-|
T Consensus        95 ~~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSA  173 (364)
T KOG0658|consen   95 VYLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSA  173 (364)
T ss_pred             hHHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcc
Confidence            356799999999 9999998421 11122221    122333333              999999976 99999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |.+..++.        ......|..|.| |.   ...|+.+.||||.|||+.||+-|+.-|.+.... ..+...++..-.
T Consensus       174 K~L~~~ep--------niSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~-dQL~eIik~lG~  244 (364)
T KOG0658|consen  174 KVLVKGEP--------NISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSV-DQLVEIIKVLGT  244 (364)
T ss_pred             eeeccCCC--------ceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHH-HHHHHHHHHhCC
Confidence            99877643        234567888955 87   678999999999999999999999988764322 223333332222


Q ss_pred             CChHHHHHHHHhcCcCCCCC-CchhhHH-HHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAE-DEPCMKA-KIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..-.++-.-.........|. ....+.. .....-.+.+++..+++..+|.+|.++.|++.
T Consensus       245 Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~  305 (364)
T KOG0658|consen  245 PTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA  305 (364)
T ss_pred             CCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence            21111110000000000000 0000000 11122234556778899999999999999985

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.62  E-value=1.6e-15  Score=151.40  Aligned_cols=166  Identities=23%  Similarity=0.295  Sum_probs=115.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..++|.....++.++                  |+||+++.++.++++|||++
T Consensus        73 ~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~  149 (280)
T cd05581          73 DEENLYFVLEYAPNGELLQYIRKY---GSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTA  149 (280)
T ss_pred             CCceEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccc
Confidence            456789999999999999999754   258898888888777                  89999999999999999999


Q ss_pred             cccCCCCCCCC-------------CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccC
Q 046036          454 RFLPTNVTNPM-------------KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADC  517 (614)
Q Consensus       454 ~~~~~~~~~~~-------------~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~  517 (614)
                      ...........             ..........|+..|+| |.  ...++.++||||+|++++|+++|+.||.....  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--  227 (280)
T cd05581         150 KVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE--  227 (280)
T ss_pred             cccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH--
Confidence            86654321100             00112234567888966 76  56688899999999999999999999875321  


Q ss_pred             chHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCH----HHHHH
Q 046036          518 LSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGV----REMVM  588 (614)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm----~ev~~  588 (614)
                      .               ............ .+.          +....+.++...|++.+|++||++    +|++.
T Consensus       228 ~---------------~~~~~~~~~~~~-~~~----------~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         228 Y---------------LTFQKILKLEYS-FPP----------NFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             H---------------HHHHHHHhcCCC-CCC----------ccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            0               001111111110 000          011234567779999999999999    66653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.62  E-value=2.2e-15  Score=147.81  Aligned_cols=112  Identities=31%  Similarity=0.418  Sum_probs=90.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++....   .+++.....++.++                  |+||+++.++.++++|||+
T Consensus        63 ~~~~~~~~v~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~  139 (250)
T cd05123          63 QTEEKLYLVLEYAPGGELFSHLSKEG---RFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGL  139 (250)
T ss_pred             ecCCeeEEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCc
Confidence            34667899999999999999997542   47777777776666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +........       ......|+.+|++ |.  ....+.++||||||++++|+++|+.||..
T Consensus       140 ~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~  195 (250)
T cd05123         140 AKELSSEGS-------RTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYA  195 (250)
T ss_pred             ceecccCCC-------cccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            987654321       1234568888966 76  45678899999999999999999999964

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.62  E-value=6.6e-16  Score=159.04  Aligned_cols=183  Identities=15%  Similarity=0.179  Sum_probs=112.6

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++|+||+.. +|.+++..     .+++.....++.++                  |+||+++.++.+|++|||+++.
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~  166 (342)
T cd07879          93 QDFYLVMPYMQT-DLQKIMGH-----PLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARH  166 (342)
T ss_pred             ceEEEEeccccc-CHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcC
Confidence            346899999985 88776532     36777777666655                  9999999999999999999976


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh-hCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM-ALPE  530 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~-~~~~  530 (614)
                      ....          .....|++.|+| |.   ...++.++|||||||+++||++|+.||....... .+...... ..+.
T Consensus       167 ~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~  235 (342)
T cd07879         167 ADAE----------MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPG  235 (342)
T ss_pred             CCCC----------CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCC
Confidence            5322          223567888976 86   2457889999999999999999999997532111 11111110 0111


Q ss_pred             -ChHHHHHH----HHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH--HHHhHH
Q 046036          531 -SVMELVYS----RLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME--MNVIKE  595 (614)
Q Consensus       531 -~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~--L~~i~~  595 (614)
                       ...+....    .........+..  .........-..+.++...|++.+|++||++.|++..  ++.+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         236 PEFVQKLEDKAAKSYIKSLPKYPRK--DFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             HHHHHHhcccchHHHHhhcCCcccc--hHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence             00011100    000000000100  0000001112235577789999999999999999953  655543

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.60  E-value=1e-15  Score=174.48  Aligned_cols=163  Identities=19%  Similarity=0.197  Sum_probs=104.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC--------------
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY--------------  441 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~--------------  441 (614)
                      +..+.++||++. +|+++|...  ...+++.++..++.||                  |+|||++.              
T Consensus        53 ~~~~~~~e~~~~-~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~  129 (793)
T PLN00181         53 DSIVRALECEDV-SLRQWLDNP--DRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSD  129 (793)
T ss_pred             chhhhhhccCCc-cHHHHHhcc--cccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCc
Confidence            456788998855 999999753  3458898888888877                  99999954              


Q ss_pred             -----CCCeeecccccccccCCCCCC------CC---CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHH
Q 046036          442 -----DMTAYVGDFGLARFLPTNVTN------PM---KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIM  504 (614)
Q Consensus       442 -----~~~~kl~DfGla~~~~~~~~~------~~---~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEll  504 (614)
                           ++.+|++|||+++........      ..   ..........||+.|+| |+  ...++.++|||||||++|||+
T Consensus       130 ~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl  209 (793)
T PLN00181        130 SGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELF  209 (793)
T ss_pred             ccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHh
Confidence                 456677777777643211000      00   00011123568999977 87  677899999999999999999


Q ss_pred             hCCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHH
Q 046036          505 TGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVR  584 (614)
Q Consensus       505 tG~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~  584 (614)
                      +|..|+.....   ....+.....+.        ..                  .........++..|++.+|.+||+|.
T Consensus       210 ~~~~~~~~~~~---~~~~~~~~~~~~--------~~------------------~~~~~~~~~~~~~~L~~~P~~Rps~~  260 (793)
T PLN00181        210 CPVSSREEKSR---TMSSLRHRVLPP--------QI------------------LLNWPKEASFCLWLLHPEPSCRPSMS  260 (793)
T ss_pred             hCCCchhhHHH---HHHHHHHhhcCh--------hh------------------hhcCHHHHHHHHHhCCCChhhCcChH
Confidence            99888653110   000010000000        00                  01111233566789999999999999


Q ss_pred             HHHH
Q 046036          585 EMVM  588 (614)
Q Consensus       585 ev~~  588 (614)
                      ||++
T Consensus       261 eil~  264 (793)
T PLN00181        261 ELLQ  264 (793)
T ss_pred             HHhh
Confidence            9985

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.60  E-value=3.5e-15  Score=160.94  Aligned_cols=112  Identities=20%  Similarity=0.224  Sum_probs=81.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC--CcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA--TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~--~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      ..++..++|+||+.. +|.+++.....  ..........+|+.++                  |+|||++.++.+||+||
T Consensus       233 ~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~vkL~DF  311 (501)
T PHA03210        233 RSEANTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDF  311 (501)
T ss_pred             EECCeeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEeC
Confidence            345678999999965 88887754320  1112233344455554                  99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCC
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRP  509 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p  509 (614)
                      |+++.+.....      .......||+.|+| |+  ...++.++|||||||++|||++|..+
T Consensus       312 Gla~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~  367 (501)
T PHA03210        312 GTAMPFEKERE------AFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFC  367 (501)
T ss_pred             CCceecCcccc------cccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            99987654321      12234679999976 87  66789999999999999999998754

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.59  E-value=1.4e-16  Score=146.33  Aligned_cols=167  Identities=21%  Similarity=0.186  Sum_probs=107.2

Q ss_pred             CCCCceeEEecccCCCchhhh---ccCCCCCcccCHHHH------------------HHHHhhC-CCceeeCCCCCeeec
Q 046036          391 GGNDFKALAFEFMPNGSLESW---LHPNEATRRLDLAEG------------------LKIAVDI-PSNVLLDYDMTAYVG  448 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~---L~~~~~~~~l~~~~~------------------~~ia~~i-~~NILld~~~~~kl~  448 (614)
                      -.++..++.||.|.- ||+.+   .+.. ...+++..-.                  ..|.++| |+|||||..|.+|+|
T Consensus       133 F~EGdcWiCMELMd~-SlDklYk~vy~v-q~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLC  210 (361)
T KOG1006|consen  133 FSEGDCWICMELMDI-SLDKLYKRVYSV-QKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLC  210 (361)
T ss_pred             hcCCceeeeHHHHhh-hHHHHHHHHHHH-HhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeee
Confidence            346667899999987 76544   2211 1112222211                  1233444 999999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc---c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      |||++..+...        .+.+.-+|...||| |-   . ..++.++||||+|+.|+|+.||+-||.....        
T Consensus       211 DFGIcGqLv~S--------iAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s--------  274 (361)
T KOG1006|consen  211 DFGICGQLVDS--------IAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS--------  274 (361)
T ss_pred             cccchHhHHHH--------HHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH--------
Confidence            99999876543        33556789999977 65   3 3489999999999999999999999975321        


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              +-+.+.....+..    +. ......-.+--..+.+..-.|+-++.++||.-.++.+
T Consensus       275 --------vfeql~~Vv~gdp----p~-l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  275 --------VFEQLCQVVIGDP----PI-LLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             --------HHHHHHHHHcCCC----Ce-ecCcccccccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence                    1222222222211    00 0001111122334556677899999999999887764

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-15  Score=153.41  Aligned_cols=162  Identities=16%  Similarity=0.206  Sum_probs=109.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++..|||+||-++..+-.-  ++.|...+..-++.++                  +.|||++-+|.++++|||++.
T Consensus       101 enkLwiliEFC~GGAVDaimlEL--~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSA  178 (1187)
T KOG0579|consen  101 ENKLWILIEFCGGGAVDAIMLEL--GRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSA  178 (1187)
T ss_pred             cCceEEEEeecCCchHhHHHHHh--ccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccc
Confidence            55688999999999998887643  2346665555554444                  899999999999999999985


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      .....-       .....+.|||+||| |+       ...|+.++||||||+.|.||.-+.+|..+..+.          
T Consensus       179 Kn~~t~-------qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpM----------  241 (1187)
T KOG0579|consen  179 KNKSTR-------QKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPM----------  241 (1187)
T ss_pred             cchhHH-------hhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchH----------
Confidence            432211       22345899999988 76       358999999999999999999999997653221          


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             .++-. +....++.-..+..|...+.+       +...|+..+|+.||+++++++
T Consensus       242 -------RVllK-iaKSePPTLlqPS~Ws~~F~D-------fLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  242 -------RVLLK-IAKSEPPTLLQPSHWSRSFSD-------FLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             -------HHHHH-HhhcCCCcccCcchhhhHHHH-------HHHHHHhcCCccCCCHHHHhh
Confidence                   11111 111111111112233333333       334788899999999988875

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.59  E-value=1.4e-15  Score=160.97  Aligned_cols=165  Identities=21%  Similarity=0.268  Sum_probs=122.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      +.+|..+||||||.+||.-+.+.+-. +.++.|....-|++++                  -.||||+.++.+|++|||+
T Consensus        91 ~~~DqLWLVMEfC~gGSVTDLVKn~~-g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGv  169 (953)
T KOG0587|consen   91 GNGDQLWLVMEFCGGGSVTDLVKNTK-GNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGV  169 (953)
T ss_pred             CCCCeEEEEeeccCCccHHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeee
Confidence            56788999999999999999998764 6789999888887777                  6899999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      +..+...-       .......|||.||| |+       ...|+.++||||+|++..||--|.+|+.++-+..       
T Consensus       170 SaQldsT~-------grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmr-------  235 (953)
T KOG0587|consen  170 SAQLDSTV-------GRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMR-------  235 (953)
T ss_pred             eeeeeccc-------ccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhh-------
Confidence            99886543       23456789999988 76       3467889999999999999999999987653311       


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       ..++              ..+.|+..  .. .-..-.+++.+....|+..+-++||++.+.++
T Consensus       236 -aLF~--------------IpRNPPPk--Lk-rp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  236 -ALFL--------------IPRNPPPK--LK-RPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             -hhcc--------------CCCCCCcc--cc-chhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence             0010              00111110  00 00122233445556899999999999998875

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.58  E-value=4.8e-15  Score=151.58  Aligned_cols=106  Identities=22%  Similarity=0.256  Sum_probs=81.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++||||+. ++|.++++..    .+++.....++.++                  |+||++++++.+|++|||+++
T Consensus        82 ~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~  156 (328)
T cd07856          82 LEDIYFVTELLG-TDLHRLLTSR----PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLAR  156 (328)
T ss_pred             CCcEEEEeehhc-cCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCcccccc
Confidence            456789999995 5999988643    35555555555444                  999999999999999999997


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .....          .....++..|+| |+  . ..++.++|||||||+++|++||+.||...
T Consensus       157 ~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~  209 (328)
T cd07856         157 IQDPQ----------MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGK  209 (328)
T ss_pred             ccCCC----------cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            54322          122456788966 76  2 56889999999999999999999999653

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.57  E-value=5.5e-15  Score=152.21  Aligned_cols=173  Identities=16%  Similarity=0.120  Sum_probs=111.5

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++||||+ +++|.+++..    ..+++..+..++.++                  |+||+++.++.+|++|||+++..
T Consensus        94 ~~~lv~e~~-~~~l~~~~~~----~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~  168 (343)
T cd07880          94 DFYLVMPFM-GTDLGKLMKH----EKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQT  168 (343)
T ss_pred             eEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccccc
Confidence            468999999 6799988864    247888888777766                  99999999999999999999865


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      ...          .....+++.|+| |+   ...++.++||||+||+++|+++|+.||....... ..........  ..
T Consensus       169 ~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~-~~~~~~~~~~--~~  235 (343)
T cd07880         169 DSE----------MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLD-QLMEIMKVTG--TP  235 (343)
T ss_pred             ccC----------ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcC--CC
Confidence            432          123467888966 76   2457899999999999999999999997532110 1111111000  00


Q ss_pred             HHHHHHHH---------hcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          533 MELVYSRL---------LQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       533 ~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ...+...+         .......   +..........-..+.++..+|++.+|++|||+.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~  297 (343)
T cd07880         236 SKEFVQKLQSEDAKNYVKKLPRFR---KKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA  297 (343)
T ss_pred             CHHHHHhhcchhHHHHHHhccccC---cchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            11111111         1000000   00011111112224557788999999999999999994

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.1e-15  Score=166.98  Aligned_cols=169  Identities=21%  Similarity=0.277  Sum_probs=109.1

Q ss_pred             CceeEEecccCCCchhhhccCCCC--CcccCHHHHHHHHhhC--------------CCceeeCCCCCeeecccccccccC
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEA--TRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~--~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      -..|+=||||+.-.+.++++...-  ....-|..-.+|+.|+              |.||+||++..+||+|||+|....
T Consensus       669 ~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~  748 (1351)
T KOG1035|consen  669 LILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLK  748 (1351)
T ss_pred             eEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhh
Confidence            347899999999777887775432  2345576666676666              999999999999999999998722


Q ss_pred             ----CC---CC----CCCCCCcCcccccccccccc-cc---cC--CCCccCceeehhHHHHHHHhCCCCCCcccccCchH
Q 046036          458 ----TN---VT----NPMKGQSNSAAVWGSIGYNM-EW---VA--RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL  520 (614)
Q Consensus       458 ----~~---~~----~~~~~~~~~~~~~gt~~y~a-E~---~~--~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l  520 (614)
                          ..   ..    .........|..+||.-|+| |.   ..  +|+.|+|+||+|||++||+.   ||...-+....+
T Consensus       749 ~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~TsMERa~iL  825 (1351)
T KOG1035|consen  749 ENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTSMERASIL  825 (1351)
T ss_pred             hhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCCchHHHHHHH
Confidence                00   00    00111224567899999966 87   23  79999999999999999984   565321111111


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .......+|.. .+..                      ...+..-.++..+.++.||.+|||+.|++.
T Consensus       826 ~~LR~g~iP~~-~~f~----------------------~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  826 TNLRKGSIPEP-ADFF----------------------DPEHPEEASLIRWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             HhcccCCCCCC-cccc----------------------cccchHHHHHHHHHhcCCCccCCCHHHHhh
Confidence            11111112211 0001                      111222234566778999999999999985

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.57  E-value=5.5e-15  Score=152.95  Aligned_cols=112  Identities=28%  Similarity=0.248  Sum_probs=90.4

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC--CCeeecc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD--MTAYVGD  449 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~--~~~kl~D  449 (614)
                      +..+++.|||+|.++. +|+++|.... -..++......|+.+|                  |+||||-+.  ..+||.|
T Consensus       257 F~fr~HlciVfELL~~-NLYellK~n~-f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVID  334 (586)
T KOG0667|consen  257 FYFRNHLCIVFELLST-NLYELLKNNK-FRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVID  334 (586)
T ss_pred             cccccceeeeehhhhh-hHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEe
Confidence            4457889999999999 9999998764 3347888888888877                  999999754  4789999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccc-cccc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y-~aE~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ||.|.......         . ..+-+..| +||+  +.+|+.+.||||||||+.||.||.+-|.+.
T Consensus       335 FGSSc~~~q~v---------y-tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  335 FGSSCFESQRV---------Y-TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             cccccccCCcc---------e-eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            99998765432         1 35667788 5588  889999999999999999999997666653

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.56  E-value=7.5e-15  Score=138.35  Aligned_cols=186  Identities=16%  Similarity=0.247  Sum_probs=127.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC---eeec
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT---AYVG  448 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~---~kl~  448 (614)
                      +.++...|||||-|.+|+|..+|+.+   +.++..+.-+++.+|                  |.|||..+...   +|||
T Consensus       145 FEdd~~FYLVfEKm~GGplLshI~~~---~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiC  221 (463)
T KOG0607|consen  145 FEDDTRFYLVFEKMRGGPLLSHIQKR---KHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKIC  221 (463)
T ss_pred             hcccceEEEEEecccCchHHHHHHHh---hhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeee
Confidence            34566689999999999999999854   357777776666666                  99999986654   6999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL  520 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l  520 (614)
                      ||-++..................+.+|+..||| |+       ...|+.++|.||+|||+|-|++|..||.+.=+   .-
T Consensus       222 DfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg---~d  298 (463)
T KOG0607|consen  222 DFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCG---AD  298 (463)
T ss_pred             ccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccC---Cc
Confidence            998876543322211111122345789999988 76       35788999999999999999999999986322   33


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCc-hhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDE-PCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..|-+...-..+++.+-+.+.++.-..|++. ...+....+.+..+       +..++.+|-++.+|+.
T Consensus       299 CGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnL-------lvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  299 CGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNL-------LVRDAKQRLSAAQVLN  360 (463)
T ss_pred             CCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHH-------HhccHHhhhhhhhccC
Confidence            4566655555577777777777655555432 22222333333322       3378888888887775

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.56  E-value=7.1e-15  Score=151.50  Aligned_cols=178  Identities=15%  Similarity=0.110  Sum_probs=111.6

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++|+||+ +|+|.+++...    .++|..+..++.++                  |+||++++++.+|++|||+++.
T Consensus        95 ~~~~lv~~~~-~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~  169 (345)
T cd07877          95 NDVYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH  169 (345)
T ss_pred             ccEEEEehhc-ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEeccccccc
Confidence            3468888887 67999988642    47888888877766                  9999999999999999999876


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC--C
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL--P  529 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~--~  529 (614)
                      ....          .....|++.|+| |+  . ..++.++|||||||+++||++|+.||...... ..+....+...  +
T Consensus       170 ~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~  238 (345)
T cd07877         170 TDDE----------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPG  238 (345)
T ss_pred             cccc----------ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCC
Confidence            4322          223567888977 86  2 46788999999999999999999998643211 11111111110  0


Q ss_pred             CCh----HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESV----MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      ...    .+.............+....  .......-..+.++...|++.+|++||++.+++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         239 AELLKKISSESARNYIQSLTQMPKMNF--ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             HHHHhhcccHhHHHHHHHhcccCCcch--hhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence            000    00000111111111111100  00000112234577789999999999999998853

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.56  E-value=1.4e-15  Score=134.90  Aligned_cols=124  Identities=23%  Similarity=0.289  Sum_probs=90.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCC-CCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPN-EATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~-~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~Df  450 (614)
                      ..+...++.||.|.. ||+.+-..- ..+..++..-.-+||..+                   |+|||++.++++|+|||
T Consensus       115 ~regdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDF  193 (282)
T KOG0984|consen  115 FREGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDF  193 (282)
T ss_pred             hccccEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEccc
Confidence            345668899999988 887653210 023345555555555554                   99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      |++..+.+.        .+.+.-.|.-.||| |.      ...|+.|+||||+|+.+.||.+++.||+........+.+.
T Consensus       194 GIsG~L~dS--------iAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqv  265 (282)
T KOG0984|consen  194 GISGYLVDS--------IAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQV  265 (282)
T ss_pred             ccceeehhh--------hHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHH
Confidence            999877653        23444678889977 65      3478999999999999999999999998754443333333

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.56  E-value=1.1e-15  Score=152.05  Aligned_cols=113  Identities=21%  Similarity=0.255  Sum_probs=91.9

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +.+..+.|+.||-|-+|.|...|.+++   .++-.+..-++..+                  |.|.+||.++-+|+.|||
T Consensus       489 frd~kyvYmLmEaClGGElWTiLrdRg---~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFG  565 (732)
T KOG0614|consen  489 FRDSKYVYMLMEACLGGELWTILRDRG---SFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFG  565 (732)
T ss_pred             hccchhhhhhHHhhcCchhhhhhhhcC---CcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehh
Confidence            445677899999999999999998764   24433322232222                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +||.+....        .+.+.||||.|.| |.  ....+..+|.||+|++++||+||++||...
T Consensus       566 FAKki~~g~--------KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~  622 (732)
T KOG0614|consen  566 FAKKIGSGR--------KTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGV  622 (732)
T ss_pred             hHHHhccCC--------ceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCC
Confidence            999987653        3667999999965 87  667889999999999999999999999864

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.54  E-value=1e-14  Score=151.51  Aligned_cols=134  Identities=25%  Similarity=0.311  Sum_probs=103.5

Q ss_pred             cccchHHHHHhhcC--CCCCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC----------------
Q 046036          372 LRIPYDELLRATDG--SSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI----------------  433 (614)
Q Consensus       372 ~~~~~~~l~~at~~--~~~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i----------------  433 (614)
                      +++.+++|+++.+-  -..-..-.+...+|||||++|||+..|..-+....|+..+.+.+..++                
T Consensus        66 kKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRD  145 (732)
T KOG4250|consen   66 KKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRD  145 (732)
T ss_pred             HHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence            45667777777542  111011245678999999999999999876556678888888777666                


Q ss_pred             --CCceeeC--CCC--CeeecccccccccCCCCCCCCCCCcCcccccccccc-cccc---cCCCCccCceeehhHHHHHH
Q 046036          434 --PSNVLLD--YDM--TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEW---VARYQHKGKGYSCGILLLEI  503 (614)
Q Consensus       434 --~~NILld--~~~--~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y-~aE~---~~~~~~k~DVySfGvvllEl  503 (614)
                        |.||++-  +++  .-|++|||.||-++++.        ..+.++||..| .||.   .+.++..+|.|||||++||.
T Consensus       146 lKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s--------~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~c  217 (732)
T KOG4250|consen  146 LKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS--------LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYEC  217 (732)
T ss_pred             CCCCcEEEeecCCCceEEeeecccccccCCCCC--------eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHH
Confidence              9999883  334  46999999999887763        35678999999 5566   37899999999999999999


Q ss_pred             HhCCCCCCcc
Q 046036          504 MTGKRPTDEM  513 (614)
Q Consensus       504 ltG~~p~~~~  513 (614)
                      +||..||.+.
T Consensus       218 aTG~lPF~p~  227 (732)
T KOG4250|consen  218 ATGELPFIPF  227 (732)
T ss_pred             hccCCCCCcC
Confidence            9999999753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.53  E-value=8.1e-16  Score=155.37  Aligned_cols=195  Identities=27%  Similarity=0.422  Sum_probs=160.3

Q ss_pred             EEccCCcccccCCCC--CcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhc
Q 046036           68 LDAGGNQFAGDIPAG--IPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN  145 (614)
Q Consensus        68 L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~  145 (614)
                      |.|++-++. ..|..  -..+..-...||+.|++. ++|..++.+..|+.+.            |.+|.+. .+|..+.+
T Consensus        55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~li------------Ly~n~~r-~ip~~i~~  119 (722)
T KOG0532|consen   55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLI------------LYHNCIR-TIPEAICN  119 (722)
T ss_pred             cccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHH------------HHhccce-ecchhhhh
Confidence            566666665 34422  234556677889999998 8888888888888777            8888888 78888999


Q ss_pred             cCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHh
Q 046036          146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLL  225 (614)
Q Consensus       146 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~  225 (614)
                      +..|++|||+.|+++ .+|..+..++ |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|+
T Consensus       120 L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  120 LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence            999999999999998 7788888775 899999999998 78888888899999999999987 5677888999999999


Q ss_pred             ccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCC
Q 046036          226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       226 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      +..|++. .+|..+..|+ |..||+|+|+++ .+|-.|..|..|++|-|.+|+++..+.
T Consensus       196 vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  196 VRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             Hhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence            9999988 6777777554 788999999999 788999999999999999999986544

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=1.8e-14  Score=131.48  Aligned_cols=116  Identities=22%  Similarity=0.248  Sum_probs=93.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+...||||++|+. +|+..|...  ..++...+..+++.++                  |.|+|++.++..|++|||++
T Consensus        95 ~r~t~ylVf~~ceh-DLaGlLsn~--~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGla  171 (376)
T KOG0669|consen   95 DRATFYLVFDFCEH-DLAGLLSNR--KVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLA  171 (376)
T ss_pred             ccceeeeeHHHhhh-hHHHHhcCc--cccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccc
Confidence            45568999999999 999999864  3457777777776665                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +.+...+...   ....+..+-|.+|.| |.   ...++.+.|||.-|||+.||.||.+-+.+.
T Consensus       172 r~fs~~~n~~---kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgn  232 (376)
T KOG0669|consen  172 RAFSTSKNVV---KPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGN  232 (376)
T ss_pred             cceecccccC---CCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCC
Confidence            8776543211   123566778999977 87   668899999999999999999998877653

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=1.5e-14  Score=136.86  Aligned_cols=115  Identities=20%  Similarity=0.272  Sum_probs=89.0

Q ss_pred             CCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecc
Q 046036          388 MDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       388 ~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~D  449 (614)
                      .++..+...+.|.||+++|+|--++...+   .|+.....-+..+|                  -.|||+|..++.|+.|
T Consensus       318 scfqtesrlffvieyv~ggdlmfhmqrqr---klpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltd  394 (593)
T KOG0695|consen  318 SCFQTESRLFFVIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTD  394 (593)
T ss_pred             hhhcccceEEEEEEEecCcceeeehhhhh---cCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecc
Confidence            34566777899999999999988776533   34443322222222                  7999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ||++|.--....       .+++.||||.|+| |.  +..|....|.|++||+++||+.|+.||+-
T Consensus       395 ygmcke~l~~gd-------~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdi  453 (593)
T KOG0695|consen  395 YGMCKEGLGPGD-------TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI  453 (593)
T ss_pred             cchhhcCCCCCc-------ccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcce
Confidence            999985332221       2566999999976 87  77899999999999999999999999974

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.50  E-value=3.8e-14  Score=141.38  Aligned_cols=112  Identities=22%  Similarity=0.278  Sum_probs=86.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC-CCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD-YDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld-~~~~~kl~DfGla  453 (614)
                      .-..|||.|.-.+|+|++||-.+..  .+......++..||                  |.||.+- +-+-+|+.|||++
T Consensus        89 QTKlyLiLELGD~GDl~DyImKHe~--Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFS  166 (864)
T KOG4717|consen   89 QTKLYLILELGDGGDLFDYIMKHEE--GLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFS  166 (864)
T ss_pred             cceEEEEEEecCCchHHHHHHhhhc--cccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeecccc
Confidence            4458999999999999999976542  35555555554444                  9998665 4578999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCC-CccCceeehhHHHHHHHhCCCCCCccc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARY-QHKGKGYSCGILLLEIMTGKRPTDEMF  514 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~-~~k~DVySfGvvllElltG~~p~~~~~  514 (614)
                      ..+.+.+        ..+..||+..|.| |.  +..| ..++||||+||+||-|++|+.||....
T Consensus       167 Nkf~PG~--------kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAN  223 (864)
T KOG4717|consen  167 NKFQPGK--------KLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAN  223 (864)
T ss_pred             ccCCCcc--------hhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCcccccc
Confidence            7766553        3567899999955 87  4444 467999999999999999999998643

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.50  E-value=1.3e-14  Score=148.61  Aligned_cols=111  Identities=23%  Similarity=0.324  Sum_probs=87.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+...|+||||+.+|.++++|...+.   +.......+..++                  +.|||||.+++.||+|||+
T Consensus       125 ~t~~~lylV~eya~~ge~~~yl~~~gr---~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgf  201 (596)
T KOG0586|consen  125 ETEATLYLVMEYASGGELFDYLVKHGR---MKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGF  201 (596)
T ss_pred             eecceeEEEEEeccCchhHHHHHhccc---chhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeecccc
Confidence            446779999999999999999986542   2112222222222                  8999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +.++....        .....||++.|+| |+   ......++|+||.|||+|-|+.|..||++
T Consensus       202 S~~~~~~~--------~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG  257 (596)
T KOG0586|consen  202 STFFDYGL--------MLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDG  257 (596)
T ss_pred             ceeecccc--------cccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCC
Confidence            98887442        2445899999977 87   34566899999999999999999999985

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=2.7e-14  Score=145.70  Aligned_cols=132  Identities=21%  Similarity=0.287  Sum_probs=93.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHH-HHHHHHh---hC--------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLA-EGLKIAV---DI--------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~-~~~~ia~---~i--------------~~NILld~~~~~kl~DfG  451 (614)
                      +.+++.+|+||||+++|++-..|-..+   -+... .|.-||.   .|              |.|||+|.+|++|+.|||
T Consensus       698 FQDkdnLYFVMdYIPGGDmMSLLIrmg---IFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFG  774 (1034)
T KOG0608|consen  698 FQDKDNLYFVMDYIPGGDMMSLLIRMG---IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFG  774 (1034)
T ss_pred             eccCCceEEEEeccCCccHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeecc
Confidence            567899999999999999999987543   12222 3333322   11              999999999999999999


Q ss_pred             cccccC--------CCCCCCC-------------------------CCC--cCcccccccccccc-cc--cCCCCccCce
Q 046036          452 LARFLP--------TNVTNPM-------------------------KGQ--SNSAAVWGSIGYNM-EW--VARYQHKGKG  493 (614)
Q Consensus       452 la~~~~--------~~~~~~~-------------------------~~~--~~~~~~~gt~~y~a-E~--~~~~~~k~DV  493 (614)
                      ++.-+.        ....|..                         ..+  ......+||+.|+| |+  ...++.-+|.
T Consensus       775 LCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdw  854 (1034)
T KOG0608|consen  775 LCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDW  854 (1034)
T ss_pred             ccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchh
Confidence            985321        1111110                         000  01224689999977 87  6678899999


Q ss_pred             eehhHHHHHHHhCCCCCCcccccCch--HHHHH
Q 046036          494 YSCGILLLEIMTGKRPTDEMFADCLS--LHNFC  524 (614)
Q Consensus       494 ySfGvvllElltG~~p~~~~~~~~~~--l~~~~  524 (614)
                      ||.||||+||+.|+.||.+..+.+..  +..|.
T Consensus       855 ws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~  887 (1034)
T KOG0608|consen  855 WSVGVILYEMLVGQPPFLADTPGETQYKVINWR  887 (1034)
T ss_pred             hHhhHHHHHHhhCCCCccCCCCCcceeeeeehh
Confidence            99999999999999999876654432  34454

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.49  E-value=1.2e-13  Score=146.28  Aligned_cols=113  Identities=20%  Similarity=0.239  Sum_probs=81.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCC---------------------CcccCHHHHHHHHhhC------------------
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEA---------------------TRRLDLAEGLKIAVDI------------------  433 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~---------------------~~~l~~~~~~~ia~~i------------------  433 (614)
                      ++..+|||||+++|+|.++++....                     ...++|..+..++.++                  
T Consensus       257 ~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLK  336 (507)
T PLN03224        257 KGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIK  336 (507)
T ss_pred             CCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCc
Confidence            4568999999999999999975321                     1235677777777665                  


Q ss_pred             CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc-c-CC----------------------CC
Q 046036          434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V-AR----------------------YQ  488 (614)
Q Consensus       434 ~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~-~~----------------------~~  488 (614)
                      |+||+++.++.+||+|||+++.+.....      .......+|+.|+| |. . ..                      ..
T Consensus       337 p~NILl~~~~~~kL~DFGla~~~~~~~~------~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~  410 (507)
T PLN03224        337 PENLLVTVDGQVKIIDFGAAVDMCTGIN------FNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRP  410 (507)
T ss_pred             hHhEEECCCCcEEEEeCcCccccccCCc------cCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCC
Confidence            9999999999999999999976543221      11222345788966 75 1 11                      12


Q ss_pred             ccCceeehhHHHHHHHhCCC-CCC
Q 046036          489 HKGKGYSCGILLLEIMTGKR-PTD  511 (614)
Q Consensus       489 ~k~DVySfGvvllElltG~~-p~~  511 (614)
                      .+.||||+||+++||++|.. |+.
T Consensus       411 ~~~DvwSlGvil~em~~~~l~p~~  434 (507)
T PLN03224        411 DLFDSYTAGVLLMQMCVPELRPVA  434 (507)
T ss_pred             CccchhhHHHHHHHHHhCCCCCcc
Confidence            34799999999999999875 664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.48  E-value=4.9e-14  Score=148.02  Aligned_cols=201  Identities=30%  Similarity=0.454  Sum_probs=154.3

Q ss_pred             eeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccc-cccccEEEccCCcccccCCCCCcCCCCCCEEe
Q 046036           15 NLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL-STKLRILDAGGNQFAGDIPAGIPKYFNLIQLG   93 (614)
Q Consensus        15 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l-~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~   93 (614)
                      .|++..|.+. ..+..+..++.++.|++.+|.++ .+|..   ...+ + +|+.|++++|++. .+|..+..+++|+.|+
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~---~~~~~~-nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~  169 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPL---IGLLKS-NLKELDLSDNKIE-SLPSPLRNLPNLKNLD  169 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccc---cccchh-hcccccccccchh-hhhhhhhccccccccc
Confidence            5778888775 33445566688899999999998 44444   2222 2 6888999999987 6667788899999999


Q ss_pred             ccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCC
Q 046036           94 LDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTL  173 (614)
Q Consensus        94 L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  173 (614)
                      +++|+++ .+|...+.+++|+.|+            +++|+++ .+|.....+..|++|.+++|++. ..+..+..+.++
T Consensus       170 l~~N~l~-~l~~~~~~~~~L~~L~------------ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l  234 (394)
T COG4886         170 LSFNDLS-DLPKLLSNLSNLNNLD------------LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL  234 (394)
T ss_pred             cCCchhh-hhhhhhhhhhhhhhee------------ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc
Confidence            9999998 6666666777888777            9999988 66666666777999999999654 466777888888


Q ss_pred             CEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCcccc
Q 046036          174 SSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG  240 (614)
Q Consensus       174 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  240 (614)
                      ..|.+++|++. ..+..++.+++++.|++++|.++....  ++.+.+++.|++++|.+....|....
T Consensus       235 ~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         235 SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             cccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence            88888888887 446778888889999999999886544  88888899999999988866665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.47  E-value=1.3e-15  Score=153.97  Aligned_cols=171  Identities=29%  Similarity=0.408  Sum_probs=79.3

Q ss_pred             CcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcc
Q 046036           37 LTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL  116 (614)
Q Consensus        37 L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  116 (614)
                      -...||+.|++. .+|..+..|   - .|+.|.|..|.+. .+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f---~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAF---V-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             hhhhhccccccc-cCchHHHHH---H-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            344455555554 444442222   2 3334444455444 44444555555555555555554 4444443332 2222


Q ss_pred             cccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCC
Q 046036          117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSN  196 (614)
Q Consensus       117 ~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  196 (614)
                      -            +++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|.++..| .
T Consensus       149 i------------~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-p  212 (722)
T KOG0532|consen  149 I------------VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-P  212 (722)
T ss_pred             E------------EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-c
Confidence            2            4445544 44444444445555555555544 44444445555555555555544 344444422 2


Q ss_pred             CceeccCCccCCCCccccccCcccchHHhccCcccc
Q 046036          197 TQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ  232 (614)
Q Consensus       197 L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  232 (614)
                      |..||+|.|+++ .+|..|..|..|++|-|.+|.++
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            444555555554 34445555555555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.47  E-value=4.9e-14  Score=148.04  Aligned_cols=202  Identities=34%  Similarity=0.495  Sum_probs=169.5

Q ss_pred             cEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCC-CCCEEeccCCcCcccCCccccCCCCCCcc
Q 046036           38 TYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKL  116 (614)
Q Consensus        38 ~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  116 (614)
                      ..|+++.|.+...+..    +..++ .++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|
T Consensus        96 ~~l~~~~~~~~~~~~~----~~~~~-~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L  168 (394)
T COG4886          96 PSLDLNLNRLRSNISE----LLELT-NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL  168 (394)
T ss_pred             ceeeccccccccCchh----hhccc-ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccccc
Confidence            3689999988533332    44555 8999999999998 7777777775 9999999999998 677788999999999


Q ss_pred             cccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCC
Q 046036          117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSN  196 (614)
Q Consensus       117 ~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  196 (614)
                      +            +++|+++ .+|...+.+++|+.|++++|++. .+|........|++|.+++|.+. ..+..+.++.+
T Consensus       169 ~------------l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~  233 (394)
T COG4886         169 D------------LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN  233 (394)
T ss_pred             c------------cCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc
Confidence            8            9999999 66766668999999999999999 77877667778999999999755 56677899999


Q ss_pred             CceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccC
Q 046036          197 TQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELE  264 (614)
Q Consensus       197 L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  264 (614)
                      +..|.+.+|++.. .+..++.+++++.|++++|.++ .++. ++.+.+++.|++++|.++...|....
T Consensus       234 l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         234 LSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccccccCCceeee-ccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhhc
Confidence            9999999999874 3677888999999999999998 4444 88999999999999999977665544

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.44  E-value=1.1e-13  Score=134.10  Aligned_cols=187  Identities=17%  Similarity=0.165  Sum_probs=121.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC----------
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY----------  441 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~----------  441 (614)
                      +.-.++.|+|+|.|.- |++++|.... ..+++......|+.|+                  |+|||+-+          
T Consensus       160 FdyrghiCivfellG~-S~~dFlk~N~-y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k  237 (415)
T KOG0671|consen  160 FDYRGHICIVFELLGL-STFDFLKENN-YIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPK  237 (415)
T ss_pred             hhccCceEEEEeccCh-hHHHHhccCC-ccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccC
Confidence            4557788999999965 9999998753 4567777777777777                  99998832          


Q ss_pred             ----------CCCeeecccccccccCCCCCCCCCCCcCcccccccccc-cccc--cCCCCccCceeehhHHHHHHHhCCC
Q 046036          442 ----------DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEW--VARYQHKGKGYSCGILLLEIMTGKR  508 (614)
Q Consensus       442 ----------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y-~aE~--~~~~~~k~DVySfGvvllElltG~~  508 (614)
                                ...+||.|||-|..-...          .+.++.|..| +||+  +...+..+||||+||||.|+.||..
T Consensus       238 ~~~~~~r~~ks~~I~vIDFGsAtf~~e~----------hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~  307 (415)
T KOG0671|consen  238 KKVCFIRPLKSTAIKVIDFGSATFDHEH----------HSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGET  307 (415)
T ss_pred             CccceeccCCCcceEEEecCCcceeccC----------cceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccce
Confidence                      234789999999865443          2347889999 5588  6788999999999999999999999


Q ss_pred             CCCcccc-cCchHHHHHHhhCCCChHHHH--HHHHhc---CcCCCCCC----------chh--hHHHHHHHHHHHHHHhh
Q 046036          509 PTDEMFA-DCLSLHNFCEMALPESVMELV--YSRLLQ---GVDKDAED----------EPC--MKAKIRECLTSLGRIGI  570 (614)
Q Consensus       509 p~~~~~~-~~~~l~~~~~~~~~~~~~~~~--~~~l~~---~~~~~~~~----------~~~--~~~~~~~~~~~~~~i~~  570 (614)
                      -|..... +...+++.+-..+|..+..-.  ......   .|+.....          +|.  ......++...++++..
T Consensus       308 LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~  387 (415)
T KOG0671|consen  308 LFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLR  387 (415)
T ss_pred             ecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHH
Confidence            8765322 222233444334443322111  110100   11100000          000  00111344556778888


Q ss_pred             ccCCCCccCCCCHHHHHH
Q 046036          571 ASLTETPNERMGVREMVM  588 (614)
Q Consensus       571 ~C~~~~p~~RPsm~ev~~  588 (614)
                      ..+..||.+|+|++|++.
T Consensus       388 ~mL~fDP~~RiTl~EAL~  405 (415)
T KOG0671|consen  388 RMLEFDPARRITLREALS  405 (415)
T ss_pred             HHHccCccccccHHHHhc
Confidence            889999999999999875

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.44  E-value=3.5e-13  Score=139.12  Aligned_cols=181  Identities=21%  Similarity=0.226  Sum_probs=122.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGl  452 (614)
                      .+...+.|.+||+.|+|.+.+...  ...++|.-+..++.++                   ++|.++|..+.+|++|||+
T Consensus        18 ~~~~~~~i~~~c~rGsl~D~i~~~--~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl   95 (484)
T KOG1023|consen   18 DGPEMIVIWEYCSRGSLLDILSNE--DIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGL   95 (484)
T ss_pred             cCCceEEEEeeecCccHHhHHhcc--ccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccceeeeeEEEEechhhh
Confidence            347789999999999999999863  4568998887777777                   7999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccc-cccc-cC--------CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEW-VA--------RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y-~aE~-~~--------~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      ..+.......     .......-..-| .||. ..        ..+.++||||||++++|+++.+.||+.......    
T Consensus        96 ~~~~~~~~~~-----~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~----  166 (484)
T KOG1023|consen   96 NSLLEETAEP-----EAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVED----  166 (484)
T ss_pred             cccccccccc-----cccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCC----
Confidence            9877531100     001111112223 3355 11        257889999999999999999999986322111    


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                               ..+++.. +.+  ...+.-||...... +....++.++..||..+|++||++++|-..++.+...
T Consensus       167 ---------~~eii~~-~~~--~~~~~~rP~i~~~~-e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  167 ---------PDEIILR-VKK--GGSNPFRPSIELLN-ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             ---------hHHHHHH-HHh--cCCCCcCcchhhhh-hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccc
Confidence                     1222222 222  11222233333221 3334677889999999999999999999888766543

>PLN03150 hypothetical protein; Provisional

Probab=99.42  E-value=2.8e-13  Score=148.80  Aligned_cols=118  Identities=30%  Similarity=0.483  Sum_probs=100.8

Q ss_pred             CCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECc
Q 046036          196 NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLS  275 (614)
Q Consensus       196 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls  275 (614)
                      .++.|+|++|.+++.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCcc--ccCCCceEEEecCCCcccCCCCccccccc
Q 046036          276 FNNFEGQLPSMS--VFTNTSVISIVGNGKLCGGVPELRLLSCA  316 (614)
Q Consensus       276 ~N~l~~~~p~~~--~~~~l~~~~~~~N~~~c~~~~~~~~~~c~  316 (614)
                      +|+++|.+|...  .+.++..+++.+|+.+|+.+.   ...|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~---l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG---LRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCC---CCCCc
Confidence            999999988632  134556789999999998532   34564

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.39  E-value=5.3e-13  Score=123.25  Aligned_cols=182  Identities=19%  Similarity=0.224  Sum_probs=116.8

Q ss_pred             cccccchHHHHHhhcCCCCCCCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC----------------
Q 046036          370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI----------------  433 (614)
Q Consensus       370 ~~~~~~~~~l~~at~~~~~~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i----------------  433 (614)
                      ..+.|++.++....    +.|.......++..|||.|||+..||+.. ....+-.+.+++|+++                
T Consensus       240 ~lrifshpnilpvl----gacnsppnlv~isq~mp~gslynvlhe~t-~vvvd~sqav~faldiargmaflhslep~ipr  314 (448)
T KOG0195|consen  240 ALRIFSHPNILPVL----GACNSPPNLVIISQYMPFGSLYNVLHEQT-SVVVDHSQAVRFALDIARGMAFLHSLEPMIPR  314 (448)
T ss_pred             ceeeecCCchhhhh----hhccCCCCceEeeeeccchHHHHHHhcCc-cEEEecchHHHHHHHHHhhHHHHhhcchhhhh
Confidence            34556666655443    23566788899999999999999999763 4456666777777666                


Q ss_pred             ----CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cC---CCCccCceeehhHHHHHH
Q 046036          434 ----PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA---RYQHKGKGYSCGILLLEI  503 (614)
Q Consensus       434 ----~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~---~~~~k~DVySfGvvllEl  503 (614)
                          +..|++|+++.++|+ .+-+|+....           ....-+|.||+ |-  ..   .--..+|+|||+|++||+
T Consensus       315 ~~lns~hvmidedltaris-mad~kfsfqe-----------~gr~y~pawmspealqrkped~n~raadmwsfaillwel  382 (448)
T KOG0195|consen  315 FYLNSKHVMIDEDLTARIS-MADTKFSFQE-----------VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWEL  382 (448)
T ss_pred             hhcccceEEecchhhhhee-cccceeeeec-----------cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHh
Confidence                678999999999986 2222222211           11233456655 54  11   223578999999999999


Q ss_pred             HhCCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCH
Q 046036          504 MTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGV  583 (614)
Q Consensus       504 ltG~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm  583 (614)
                      .|+..||.+..+.+.-             ..+.-+.+.-...      |.    +..-   +.+++.-|+.+||.+||.+
T Consensus       383 ~trevpfadlspmecg-------------mkialeglrv~ip------pg----is~h---m~klm~icmnedpgkrpkf  436 (448)
T KOG0195|consen  383 NTREVPFADLSPMECG-------------MKIALEGLRVHIP------PG----ISRH---MNKLMNICMNEDPGKRPKF  436 (448)
T ss_pred             hccccccccCCchhhh-------------hhhhhccccccCC------CC----ccHH---HHHHHHHHhcCCCCcCCCc
Confidence            9999999875442110             0111111111110      11    1122   3345556999999999999


Q ss_pred             HHHHHHHHHhH
Q 046036          584 REMVMEMNVIK  594 (614)
Q Consensus       584 ~ev~~~L~~i~  594 (614)
                      ..|+-.|++++
T Consensus       437 dmivpilekm~  447 (448)
T KOG0195|consen  437 DMIVPILEKMI  447 (448)
T ss_pred             ceehhhHHHhc
Confidence            99999998754

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.35  E-value=3.9e-13  Score=142.06  Aligned_cols=177  Identities=19%  Similarity=0.281  Sum_probs=119.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-----CCcccCHHHHHHHHhhC--------------CCceeeCC---C--CCeee
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-----ATRRLDLAEGLKIAVDI--------------PSNVLLDY---D--MTAYV  447 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-----~~~~l~~~~~~~ia~~i--------------~~NILld~---~--~~~kl  447 (614)
                      .+.|.|++.|.|.- +|.+++....     ...--.|....+++.|+              |.|||++.   +  ..|+|
T Consensus       574 d~qF~YIalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~i  652 (903)
T KOG1027|consen  574 DRQFLYIALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKI  652 (903)
T ss_pred             CCceEEEEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEe
Confidence            46789999999999 9999998631     11123466667777766              99999976   2  57999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhC-CCCCCcccccCchHHHH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTG-KRPTDEMFADCLSLHNF  523 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG-~~p~~~~~~~~~~l~~~  523 (614)
                      +|||++|.+..+...    .+......||.||+| |.  ..+-+..+|++|+|||+|..+|| ..||.+......++...
T Consensus       653 SDfglsKkl~~~~sS----~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~  728 (903)
T KOG1027|consen  653 SDFGLSKKLAGGKSS----FSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTG  728 (903)
T ss_pred             cccccccccCCCcch----hhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcC
Confidence            999999998876543    233566889999966 87  55556789999999999999996 99998654433222110


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH---------HHHHhH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM---------EMNVIK  594 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~---------~L~~i~  594 (614)
                      .....              ...  +.         .++  ...++.-..++++|..||++.+|+.         +|.-++
T Consensus       729 ~~~L~--------------~L~--~~---------~d~--eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW~~ekrL~Fl~  781 (903)
T KOG1027|consen  729 NYTLV--------------HLE--PL---------PDC--EAKDLISRMLNPDPQLRPSATDVLNHPLFWDSEKRLSFLR  781 (903)
T ss_pred             cccee--------------eec--cC---------chH--HHHHHHHHhcCCCcccCCCHHHHhCCCccCChHHHHHHHH
Confidence            00000              000  00         011  2223444558899999999999984         565555


Q ss_pred             HHhhcc
Q 046036          595 EVLLGV  600 (614)
Q Consensus       595 ~~~~~~  600 (614)
                      +...+.
T Consensus       782 dvSDRv  787 (903)
T KOG1027|consen  782 DVSDRV  787 (903)
T ss_pred             hhhhhh
Confidence            554433

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.31  E-value=1.4e-12  Score=122.82  Aligned_cols=115  Identities=20%  Similarity=0.248  Sum_probs=90.2

Q ss_pred             CCceeEEecccCCCchhhhccCCC--CCcccCHHHHHHHHhhC------------------CCceeeCCC----CCeeec
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE--ATRRLDLAEGLKIAVDI------------------PSNVLLDYD----MTAYVG  448 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~--~~~~l~~~~~~~ia~~i------------------~~NILld~~----~~~kl~  448 (614)
                      +...+|||||++. +|.+.++-++  ..+.++-.....|.-+|                  |+|||+..+    |.+||+
T Consensus       100 d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIa  178 (438)
T KOG0666|consen  100 DKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIA  178 (438)
T ss_pred             CceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEee
Confidence            5678999999999 9999997543  33456666666666666                  999999888    899999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      |||++|++......    -.....++-|++|.| |.   ..+||.+.||||.||++.||+|-++-|..
T Consensus       179 DlGlaR~~~~plkp----l~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g  242 (438)
T KOG0666|consen  179 DLGLARLFNNPLKP----LASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKG  242 (438)
T ss_pred             cccHHHHhhccccc----cccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccc
Confidence            99999987654321    112335788999955 87   67899999999999999999998776654

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.27  E-value=9e-12  Score=118.02  Aligned_cols=128  Identities=29%  Similarity=0.461  Sum_probs=99.4

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC-CCCeeeccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY-DMTAYVGDFGLAR  454 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~-~~~~kl~DfGla~  454 (614)
                      ...++||||+++++|.+++....  ..+++..+..++.++                  |.||+++. +..++++|||.+.
T Consensus        64 ~~~~~~~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~  141 (215)
T cd00180          64 NHLYLVMEYCEGGSLKDLLKENE--GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSK  141 (215)
T ss_pred             CeEEEEEecCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceE
Confidence            56899999999999999997541  347777777776666                  89999999 8999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cC-CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......       ......+...|++ |.  .. ..+.+.|+|++|++++|+                           
T Consensus       142 ~~~~~~~-------~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l---------------------------  187 (215)
T cd00180         142 LLTSDKS-------LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL---------------------------  187 (215)
T ss_pred             EccCCcc-------hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH---------------------------
Confidence            7654321       1223556777866 66  33 778999999999999999                           


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                                      ..+.++...|++.+|++||++.++++.
T Consensus       188 --------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 --------------------------------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             --------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                                            123345568889999999999999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.6e-12  Score=127.94  Aligned_cols=125  Identities=21%  Similarity=0.278  Sum_probs=60.7

Q ss_pred             cCCCccccc-cchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCc--ccccCCCCCceeccCCcc
Q 046036          130 LAENNLTGN-IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP--LEVGSLSNTQELDFSEHM  206 (614)
Q Consensus       130 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~ls~N~  206 (614)
                      |+.|+|+.. +-.....+++|+.|+|..|............+..|++|||++|++- ..+  ...+.++.|..|+++.+.
T Consensus       204 l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  204 LNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             eccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccC
Confidence            555555522 1122344556666666655422222223334455666666666554 222  234555556666666655


Q ss_pred             CCCCc-ccc-----ccCcccchHHhccCccccccCC--ccccCCCccceEEccCCcCc
Q 046036          207 LSDEI-PIT-----LGNRSKFEHLLLGGNMFQGRIP--PFFGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       207 l~~~~-~~~-----~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~  256 (614)
                      +..+- |..     ...+++|++|+++.|++. ..+  ..+..+++|+.|.+..|.|+
T Consensus       283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  283 IASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            54321 111     234566666666666663 111  12334455666666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=1.2e-13  Score=132.41  Aligned_cols=253  Identities=22%  Similarity=0.254  Sum_probs=141.3

Q ss_pred             ccCCCCCCeeeecCCccccc----CCcCCCCCCCCcEEecccc---cCcccCCcChhh----hccccccccEEEccCCcc
Q 046036            7 IGNLFRLQNLNFGNSTVQGE----IPSHLSPTSKLTYLSLFSN---NLHGIIPPSLDS----FTNLSTKLRILDAGGNQF   75 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N---~l~~~~p~~~~~----~~~l~~~L~~L~L~~N~l   75 (614)
                      +-.+..++.|+|++|.+...    +...+.+.++|+..++|+-   ++...+|+.+..    +...+ +|++||||+|-|
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~-~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP-KLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC-ceeEeecccccc
Confidence            34467788888888888733    3345667778888888764   222334544322    33444 788888888887


Q ss_pred             cccCCCC----CcCCCCCCEEeccCCcCcccCCccccC-CCCCCcccccccccccceEecCCCccccc----cchhhhcc
Q 046036           76 AGDIPAG----IPKYFNLIQLGLDRNCLAGSIPFSIGK-LQNLQKLNPLATSLYSFQLNLAENNLTGN----IPESLENL  146 (614)
Q Consensus        76 ~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~l~~~~~~l~~L~L~~N~l~~~----~~~~~~~l  146 (614)
                      ...-+..    +.+++.|++|.|.+|-+.-.--..++. |..|.+...+++...|+.+...+|++...    +...|...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            6433333    345678888888877765222222221 33333344455555666666777776522    22345666


Q ss_pred             CCCCeeecccccCCCC----CCCCCCCCCCCCEEEcCCCCCccCC----cccccCCCCCceeccCCccCCCCccccccCc
Q 046036          147 TSLQILNLSCNHLGGS----IPKPSGLFSTLSSIDFAHNNFNGSL----PLEVGSLSNTQELDFSEHMLSDEIPITLGNR  218 (614)
Q Consensus       147 ~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l  218 (614)
                      +.|+.+.++.|.|...    +...+..+++|+.|||.+|.|+...    ...+..+++|+.|++++|.+......+|.. 
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~-  263 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD-  263 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH-
Confidence            7777777777776521    1122455666777777777665322    233455566666666666665433322210 


Q ss_pred             ccchHHhccCccccccCCccccCCCccceEEccCCcCccc----CCcccCCCCCCCEEECcCCcC
Q 046036          219 SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGT----IPKELETLPFLENLNLSFNNF  279 (614)
Q Consensus       219 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l  279 (614)
                                        ..-...++|+.|.+.+|.++..    +...+...+.|..|+|++|.+
T Consensus       264 ------------------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ------------------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ------------------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                              0001235566666666665521    122334466677777777776

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.24  E-value=3.3e-12  Score=127.99  Aligned_cols=115  Identities=23%  Similarity=0.205  Sum_probs=88.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC-CCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD-MTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~-~~~kl~DfG  451 (614)
                      ....++|||||-+.- +|.++|...+....|.....-.++.|+                  |.|||+++. ...|+||||
T Consensus       504 ~hknHLClVFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfG  582 (752)
T KOG0670|consen  504 KHKNHLCLVFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFG  582 (752)
T ss_pred             hhcceeEEEehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCc
Confidence            346789999999887 999999876544445555444444444                  999999976 568999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccc-cccc--cCCCCccCceeehhHHHHHHHhCCCCCCcccc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFA  515 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y-~aE~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~  515 (614)
                      -|.....++-         +-..-+..| +||.  +..|+...|+||.||.||||.||+.-|.+...
T Consensus       583 SA~~~~enei---------tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TN  640 (752)
T KOG0670|consen  583 SASFASENEI---------TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTN  640 (752)
T ss_pred             cccccccccc---------cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCc
Confidence            9987766542         224456678 5587  77899999999999999999999998876544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.24  E-value=1.4e-12  Score=122.13  Aligned_cols=224  Identities=20%  Similarity=0.193  Sum_probs=133.0

Q ss_pred             CCCCCeeeecCC--------cccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036           10 LFRLQNLNFGNS--------TVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus        10 l~~L~~L~L~~n--------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      ..+|..|..+..        -+...+|-.+.-+.+|.++.+|++.-..+..     +..+.+.|+++...+.-++ ..|.
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~-----~~~~kptl~t~~v~~s~~~-~~~~  254 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD-----IELLKPTLQTICVHNTTIQ-DVPS  254 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec-----eeecCchhheeeeeccccc-cccc
Confidence            345666666432        2223344445566777888887764332111     2222336777777655443 2221


Q ss_pred             CCcCCCCCCEEeccCC-cCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCC
Q 046036           82 GIPKYFNLIQLGLDRN-CLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG  160 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (614)
                       +-....+..+.-+.- -.+|..-......+.|++||            ||+|.|+ .+.++..-++.++.|++|+|.|.
T Consensus       255 -l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD------------LS~N~I~-~iDESvKL~Pkir~L~lS~N~i~  320 (490)
T KOG1259|consen  255 -LLPETILADPSGSEPSTSNGSALVSADTWQELTELD------------LSGNLIT-QIDESVKLAPKLRRLILSQNRIR  320 (490)
T ss_pred             -ccchhhhcCccCCCCCccCCceEEecchHhhhhhcc------------ccccchh-hhhhhhhhccceeEEecccccee
Confidence             222222222222111 11222222333334455444            8888877 56667777788888888888887


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccC-Cccc
Q 046036          161 GSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI-PPFF  239 (614)
Q Consensus       161 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~  239 (614)
                       .+.. +..+++|+.||||+|.++ .+..+-.++.|.+.|.|+.|.|..  -..++.+-+|..||+++|+|.... -..+
T Consensus       321 -~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~I  395 (490)
T KOG1259|consen  321 -TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHI  395 (490)
T ss_pred             -eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhccc
Confidence             3333 677788888888888777 444555667788888888887742  234566677788888888876321 2357


Q ss_pred             cCCCccceEEccCCcCccc
Q 046036          240 GSFKGTIDLNLSHNNLSGT  258 (614)
Q Consensus       240 ~~l~~L~~L~Ls~N~l~~~  258 (614)
                      +++|.|+.+.|.+|.+.+.
T Consensus       396 G~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  396 GNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ccccHHHHHhhcCCCcccc
Confidence            7888888888888888854

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.23  E-value=5e-12  Score=119.89  Aligned_cols=103  Identities=26%  Similarity=0.227  Sum_probs=80.0

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHh----hC--------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAV----DI--------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~----~i--------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      +.|+|||||.. +|...++-+     ++-.+...|..    +|              |+||++..+...||.|||+|+--
T Consensus        95 e~y~v~e~m~~-nl~~vi~~e-----lDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e  168 (369)
T KOG0665|consen   95 EVYLVMELMDA-NLCQVILME-----LDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTE  168 (369)
T ss_pred             hHHHHHHhhhh-HHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhccc
Confidence            36899999988 999998732     44433333333    33              99999999999999999999754


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCC
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTD  511 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~  511 (614)
                      ..+        ...+..+.|..|.| |.  +..+.+.+||||.||++.||++|+.-|.
T Consensus       169 ~~~--------~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~  218 (369)
T KOG0665|consen  169 DTD--------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFP  218 (369)
T ss_pred             Ccc--------cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEec
Confidence            432        23566788999954 87  4559999999999999999999998765

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.21  E-value=2.6e-11  Score=112.38  Aligned_cols=121  Identities=22%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee-C-CCCCeeecc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL-D-YDMTAYVGD  449 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl-d-~~~~~kl~D  449 (614)
                      +...+++..|+||+|.|||.+-+...+    +......+++.++                  ..|||+ + +...+|+||
T Consensus        91 Fqt~d~YvF~qE~aP~gdL~snv~~~G----igE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcD  166 (378)
T KOG1345|consen   91 FQTSDAYVFVQEFAPRGDLRSNVEAAG----IGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCD  166 (378)
T ss_pred             hhcCceEEEeeccCccchhhhhcCccc----ccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeee
Confidence            445678899999999999999997643    5555555555554                  799998 3 335799999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccc-cccc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHH
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLH  521 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y-~aE~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~  521 (614)
                      ||..+..+...          ..+.-+-.| .||.       .-.+...+|||.||++++..+||+.||......+....
T Consensus       167 FG~t~k~g~tV----------~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~  236 (378)
T KOG1345|consen  167 FGLTRKVGTTV----------KYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYW  236 (378)
T ss_pred             cccccccCcee----------hhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHH
Confidence            99987554321          112334456 3444       22456779999999999999999999986554555555


Q ss_pred             HHH
Q 046036          522 NFC  524 (614)
Q Consensus       522 ~~~  524 (614)
                      +|.
T Consensus       237 ~~~  239 (378)
T KOG1345|consen  237 EWE  239 (378)
T ss_pred             HHH
Confidence            444

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.21  E-value=9e-12  Score=125.01  Aligned_cols=114  Identities=22%  Similarity=0.267  Sum_probs=87.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC---CCeeec
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD---MTAYVG  448 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~---~~~kl~  448 (614)
                      +...+..+.|||-+.+ +..+.+-..+ ..+|+...-.-++.||                  |+||||...   -++|+|
T Consensus       632 ~ET~ervFVVMEKl~G-DMLEMILSsE-kgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlC  709 (888)
T KOG4236|consen  632 FETPERVFVVMEKLHG-DMLEMILSSE-KGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLC  709 (888)
T ss_pred             ecCCceEEEEehhhcc-hHHHHHHHhh-cccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeec
Confidence            4567788999999976 5555544332 3356665444444454                  999999754   478999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |||+||+++....        ...++|||.|.| |+  ...|...-|+||.||++|.-++|.-||.+.
T Consensus       710 DFGfARiIgEksF--------RrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd  769 (888)
T KOG4236|consen  710 DFGFARIIGEKSF--------RRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED  769 (888)
T ss_pred             cccceeecchhhh--------hhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCc
Confidence            9999999986532        445899999966 87  677888999999999999999999999753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=2.7e-12  Score=120.32  Aligned_cols=227  Identities=19%  Similarity=0.204  Sum_probs=155.2

Q ss_pred             CCCCCcEEeccc--------ccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCC
Q 046036           33 PTSKLTYLSLFS--------NNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIP  104 (614)
Q Consensus        33 ~l~~L~~L~L~~--------N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  104 (614)
                      -+.+|++|-.+.        |-+...+|-.+..|.    +|+.+.++++.-. -+-+....-+.|+++......++ ..|
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~----~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~  253 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFR----NLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVP  253 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhh----hhheeeeeccchh-heeceeecCchhheeeeeccccc-ccc
Confidence            356778887764        223334454433343    5666777766533 22222233467888888655443 222


Q ss_pred             ccccCCCCCCcccccccccccceEecC-CCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCC
Q 046036          105 FSIGKLQNLQKLNPLATSLYSFQLNLA-ENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNF  183 (614)
Q Consensus       105 ~~~~~l~~L~~L~l~~~~~~l~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  183 (614)
                       .+-....+..+.            -+ ..-.+|..-..+...+.|+.||||+|.|+ .+.....-+|.++.|++|+|.|
T Consensus       254 -~l~pe~~~~D~~------------~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i  319 (490)
T KOG1259|consen  254 -SLLPETILADPS------------GSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRI  319 (490)
T ss_pred             -cccchhhhcCcc------------CCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccce
Confidence             222222222211            11 11122333344555688999999999999 7888888999999999999999


Q ss_pred             ccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccC-Ccc
Q 046036          184 NGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTI-PKE  262 (614)
Q Consensus       184 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~  262 (614)
                      .. +. .+..+++|+.||||+|.++. +..+-..+.++++|.|++|.|..  -..+..+-+|..||+++|+|.... -..
T Consensus       320 ~~-v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~  394 (490)
T KOG1259|consen  320 RT-VQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNH  394 (490)
T ss_pred             ee-eh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcc
Confidence            83 33 38889999999999999974 34444577889999999999862  234677889999999999998532 356


Q ss_pred             cCCCCCCCEEECcCCcCcccCC
Q 046036          263 LETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       263 ~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      ++++|.|+.+.|.+|++.+.+.
T Consensus       395 IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  395 IGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             cccccHHHHHhhcCCCccccch
Confidence            8899999999999999997654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.20  E-value=2.1e-12  Score=135.91  Aligned_cols=219  Identities=26%  Similarity=0.302  Sum_probs=103.6

Q ss_pred             CCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCC
Q 046036           33 PTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQN  112 (614)
Q Consensus        33 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  112 (614)
                      .+..++.+++..|.+.... ..   +..+. +|+.|++.+|+|. .+...+..+++|++|+|++|.|+...  .+..+..
T Consensus        70 ~l~~l~~l~l~~n~i~~~~-~~---l~~~~-~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~  141 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL-NH---LSKLK-SLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTL  141 (414)
T ss_pred             HhHhHHhhccchhhhhhhh-cc---ccccc-ceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccc
Confidence            3445555555555555311 11   33333 5556666666665 23322455556666666666665332  2333334


Q ss_pred             CCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCccccc
Q 046036          113 LQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVG  192 (614)
Q Consensus       113 L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  192 (614)
                      |+.|+            +++|.|+..  ..+..+++|+.+++++|.+...-+.....+.+|+.+++..|.+...  ..+.
T Consensus       142 L~~L~------------l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~  205 (414)
T KOG0531|consen  142 LKELN------------LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLD  205 (414)
T ss_pred             hhhhe------------eccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchH
Confidence            44444            555555521  2344455566666666665532220024455555555666555421  1233


Q ss_pred             CCCCCceeccCCccCCCCccccccCcc--cchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCC
Q 046036          193 SLSNTQELDFSEHMLSDEIPITLGNRS--KFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLE  270 (614)
Q Consensus       193 ~l~~L~~L~ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  270 (614)
                      .+..+..+++..|.++..-+  +..+.  .|+.+++++|++. ..+..+..+..+..|++++|++...-  .+...+.+.
T Consensus       206 ~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~  280 (414)
T KOG0531|consen  206 LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLS  280 (414)
T ss_pred             HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHH
Confidence            33444444555555543221  11122  2566666666665 23244445555666666666655321  233344445


Q ss_pred             EEECcCCcCc
Q 046036          271 NLNLSFNNFE  280 (614)
Q Consensus       271 ~L~ls~N~l~  280 (614)
                      .+...+|.+.
T Consensus       281 ~~~~~~~~~~  290 (414)
T KOG0531|consen  281 ELWLNDNKLA  290 (414)
T ss_pred             HhccCcchhc
Confidence            5555555544

>PLN03150 hypothetical protein; Provisional

Probab=99.19  E-value=2.4e-11  Score=133.64  Aligned_cols=109  Identities=37%  Similarity=0.627  Sum_probs=99.8

Q ss_pred             CCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCC
Q 046036           88 NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPS  167 (614)
Q Consensus        88 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  167 (614)
                      .++.|+|++|.++|.+|..++.+++|+.|+            |++|+++|.+|..+..+++|+.|+|++|++++.+|..+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~------------Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l  486 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSIN------------LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL  486 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEE------------CCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence            478999999999999999999999999888            99999999999999999999999999999999999999


Q ss_pred             CCCCCCCEEEcCCCCCccCCcccccCC-CCCceeccCCccCC
Q 046036          168 GLFSTLSSIDFAHNNFNGSLPLEVGSL-SNTQELDFSEHMLS  208 (614)
Q Consensus       168 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~  208 (614)
                      +.+++|+.|+|++|.++|.+|..+..+ .++..+++++|...
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            999999999999999999999988764 56788999988653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.19  E-value=7e-12  Score=131.95  Aligned_cols=246  Identities=24%  Similarity=0.269  Sum_probs=172.3

Q ss_pred             CCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCC
Q 046036            9 NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN   88 (614)
Q Consensus         9 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~   88 (614)
                      .+..++.+.+..|.+.. +-..+..+++|+.|++.+|+|..+.. .   +..++ +|++|+|++|.|+...  .+..++.
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~---l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~  141 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-L---LSSLV-NLQVLDLSFNKITKLE--GLSTLTL  141 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-c---hhhhh-cchheecccccccccc--chhhccc
Confidence            45677778888888883 44457888899999999999984433 2   45566 8889999999997443  3667778


Q ss_pred             CCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccc-hhhhccCCCCeeecccccCCCCCCCCC
Q 046036           89 LIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP-ESLENLTSLQILNLSCNHLGGSIPKPS  167 (614)
Q Consensus        89 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~  167 (614)
                      |+.|++++|.|+..  ..+..+.+|+.++            +++|.+...-+ . ...+.+|+.+++.+|.+..  ...+
T Consensus       142 L~~L~l~~N~i~~~--~~~~~l~~L~~l~------------l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~  204 (414)
T KOG0531|consen  142 LKELNLSGNLISDI--SGLESLKSLKLLD------------LSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGL  204 (414)
T ss_pred             hhhheeccCcchhc--cCCccchhhhccc------------CCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccch
Confidence            99999999998732  2445567777666            99999885444 2 5788899999999998873  2334


Q ss_pred             CCCCCCCEEEcCCCCCccCCcccccCCCC--CceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCcc
Q 046036          168 GLFSTLSSIDFAHNNFNGSLPLEVGSLSN--TQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT  245 (614)
Q Consensus       168 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  245 (614)
                      ..+..+..+++..|.++..-+  +..+..  |+.+++++|.+... +..+..+.++..|++.+|++...-  .+.....+
T Consensus       205 ~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~  279 (414)
T KOG0531|consen  205 DLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLERLPKL  279 (414)
T ss_pred             HHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccccchH
Confidence            445556666888888874322  222333  88899999988742 356777888888999988886332  24455667


Q ss_pred             ceEEccCCcCccc---CCcc-cCCCCCCCEEECcCCcCcccCC
Q 046036          246 IDLNLSHNNLSGT---IPKE-LETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       246 ~~L~Ls~N~l~~~---~p~~-~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      ..+.+..|.+...   .... ....+.+..+.+..|......+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  280 SELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             HHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            7777888876632   1121 4567788888999988876544

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.18  E-value=3e-11  Score=116.07  Aligned_cols=112  Identities=28%  Similarity=0.381  Sum_probs=87.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++.....  .+++.....++.++                  |+||+++.++.++++|||.+.
T Consensus        69 ~~~~~~v~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~  146 (225)
T smart00221       69 PEPLYLVMEYCEGGDLFDYLRKKGG--KLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLAR  146 (225)
T ss_pred             CCceEEEEeccCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceee
Confidence            4668999999999999999975421  16777666666555                  899999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .......      .......++..|++ |.   ...++.++||||||++++||++|+.||+.
T Consensus       147 ~~~~~~~------~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      147 FIHRDLA------ALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             EecCccc------ccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            7754420      01233567778866 75   35667799999999999999999999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=1.6e-11  Score=110.75  Aligned_cols=82  Identities=33%  Similarity=0.484  Sum_probs=22.3

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccc-cCCCCCCcccccccccccceEecCCCcccccc-ch
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSFQLNLAENNLTGNI-PE  141 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~-~~  141 (614)
                      +|+.|+|++|.|+ .++ .+..+++|++|++++|+|+. ++..+ ..+++|++|+            |++|+|.... -.
T Consensus        43 ~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~------------L~~N~I~~l~~l~  107 (175)
T PF14580_consen   43 KLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY------------LSNNKISDLNELE  107 (175)
T ss_dssp             T--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-------------TTS---SCCCCG
T ss_pred             CCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE------------CcCCcCCChHHhH
Confidence            4444555555544 222 24444455555555555542 22222 2344444444            5555544211 13


Q ss_pred             hhhccCCCCeeecccccCC
Q 046036          142 SLENLTSLQILNLSCNHLG  160 (614)
Q Consensus       142 ~~~~l~~L~~L~L~~N~l~  160 (614)
                      .+..+++|+.|+|.+|.++
T Consensus       108 ~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen  108 PLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             GGGG-TT--EEE-TT-GGG
T ss_pred             HHHcCCCcceeeccCCccc
Confidence            3445556666666666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=7.6e-12  Score=123.33  Aligned_cols=204  Identities=23%  Similarity=0.220  Sum_probs=136.4

Q ss_pred             cCCCCCCEEeccCCcCcccCC--ccccCCCCCCcccccccccccceEecCCCccccc--cchhhhccCCCCeeecccccC
Q 046036           84 PKYFNLIQLGLDRNCLAGSIP--FSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGN--IPESLENLTSLQILNLSCNHL  159 (614)
Q Consensus        84 ~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l  159 (614)
                      .++.+|+...|.+..+. ..+  .....|++++.||            |++|-|...  +......|++|+.|+|+.|++
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~Ld------------LS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl  184 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLD------------LSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL  184 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeec------------chhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence            45677888888777765 333  2455667777666            888877733  224456789999999999988


Q ss_pred             CCCCCCC-CCCCCCCCEEEcCCCCCccC-CcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCC-
Q 046036          160 GGSIPKP-SGLFSTLSSIDFAHNNFNGS-LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP-  236 (614)
Q Consensus       160 ~~~~p~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-  236 (614)
                      ..-.... -..+++|+.|.|+.|.|+.. +-..+..+++|..|+|..|............+..|+.|+|++|++- ..+ 
T Consensus       185 ~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~  263 (505)
T KOG3207|consen  185 SNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQ  263 (505)
T ss_pred             cCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccc
Confidence            7322221 23578899999999988732 1222456789999999999643344445556788999999999886 334 


Q ss_pred             -ccccCCCccceEEccCCcCccc-CCcc-----cCCCCCCCEEECcCCcCccc--CCCccccCCCceEEEecCC
Q 046036          237 -PFFGSFKGTIDLNLSHNNLSGT-IPKE-----LETLPFLENLNLSFNNFEGQ--LPSMSVFTNTSVISIVGNG  301 (614)
Q Consensus       237 -~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~ls~N~l~~~--~p~~~~~~~l~~~~~~~N~  301 (614)
                       ...+.++.|..|+++.+.+... .|+.     ...+++|++|+++.|++..-  +-....+.++..+.+.+|+
T Consensus       264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence             3567788999999999888753 2332     35678999999999998532  2223334445555555543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.14  E-value=8.5e-12  Score=115.39  Aligned_cols=109  Identities=21%  Similarity=0.223  Sum_probs=83.1

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHH----HHHHHhhC--------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAE----GLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~----~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      +.|.|.|.|.. +|+..+-.   .+.++-..    .++|.+|+              |.|.|++.+...||||||++|..
T Consensus       131 EiYV~TELmQS-DLHKIIVS---PQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARve  206 (449)
T KOG0664|consen  131 ELYVLTELMQS-DLHKIIVS---PQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTW  206 (449)
T ss_pred             HHHHHHHHHHh-hhhheecc---CCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEeccccccccc
Confidence            46788888887 88887753   33344332    23344444              99999999999999999999988


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +.++.      ..++..+-|..|.| |.   ..+|+...||||.||++.|++-+|.-|...
T Consensus       207 e~d~~------~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq  261 (449)
T KOG0664|consen  207 DQRDR------LNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAA  261 (449)
T ss_pred             chhhh------hhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhcc
Confidence            76654      34566778888955 87   678999999999999999999888777653

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.14  E-value=1.1e-10  Score=120.71  Aligned_cols=111  Identities=18%  Similarity=0.217  Sum_probs=86.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      -.++..+++||||.+|+|.+.-|.-+   .+...+...+++..                  -.|||+++.+.+|++|||.
T Consensus        82 lr~dklwicMEycgggslQdiy~~Tg---plselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgv  158 (829)
T KOG0576|consen   82 LRRDKLWICMEYCGGGSLQDIYHVTG---PLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGV  158 (829)
T ss_pred             hhhcCcEEEEEecCCCcccceeeecc---cchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCc
Confidence            34667899999999999999877532   45554444444433                  6899999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTD  511 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~  511 (614)
                      +..+...-       .......||+.||| |+     .+.|..++|||+.|+...|+---+.|..
T Consensus       159 saqitati-------~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf  216 (829)
T KOG0576|consen  159 SAQITATI-------AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF  216 (829)
T ss_pred             hhhhhhhh-------hhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc
Confidence            97765432       23456899999988 87     5678999999999999999988777743

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.14  E-value=5.1e-11  Score=132.86  Aligned_cols=124  Identities=15%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             ceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       436 NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      |++++.+...++.|||.++........     .......||+.|+| |+  ...++.++|||||||++|||+||+.||..
T Consensus       508 ~~~~~p~~~~~~~~~~~~~~~~~g~~~-----~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~  582 (669)
T cd05610         508 NLYQTPKQVKIGTPYRTPKSVRRGAAP-----VEGERILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFND  582 (669)
T ss_pred             ceeECCccccccccCCCchhhhccccc-----ccCCceeeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            677777777889999999876543221     12334689999977 87  66789999999999999999999999975


Q ss_pred             ccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          513 MFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      ...                 .+.+...+..... .+....       .....+.++...|+..+|++||+|.|++..
T Consensus       583 ~~~-----------------~~~~~~il~~~~~-~p~~~~-------~~~~~~~~~l~~lL~~dP~~R~ta~e~l~h  634 (669)
T cd05610         583 ETP-----------------QQVFQNILNRDIP-WPEGEE-------KLSVNAQNAIEILLTMDPTKRAGLKELKQH  634 (669)
T ss_pred             CCH-----------------HHHHHHHHhcCCC-CCcccc-------cCCHHHHHHHHHHcccChhHCcCHHHHHhC
Confidence            321                 1112222211110 011100       111223445667899999999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=4.2e-11  Score=121.52  Aligned_cols=112  Identities=24%  Similarity=0.377  Sum_probs=90.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC---------------CCceeeCCCCCeeecccccccccC
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i---------------~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      ....|+.|++|..++|.+||.++......+|.....++.++               |.||....+.+.||.|||+..-..
T Consensus       328 ~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~  407 (516)
T KOG1033|consen  328 KVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQD  407 (516)
T ss_pred             ccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhhccchhhhccccccccccchhhhhhhhhheeecc
Confidence            34678999999999999999876656667777777776666               899999999999999999987665


Q ss_pred             CCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh
Q 046036          458 TNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT  505 (614)
Q Consensus       458 ~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt  505 (614)
                      ...+ ........+...||..||. |.  +..|+.|+|+||+|++++|+++
T Consensus       408 ~~~~-~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  408 KDET-VAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             cCCc-ccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHH
Confidence            4431 1122234567889999976 65  6899999999999999999997

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=4.9e-11  Score=107.68  Aligned_cols=127  Identities=28%  Similarity=0.345  Sum_probs=47.3

Q ss_pred             hccccccccEEEccCCcccccCCCCCc-CCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccc
Q 046036           58 FTNLSTKLRILDAGGNQFAGDIPAGIP-KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLT  136 (614)
Q Consensus        58 ~~~l~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~  136 (614)
                      +.+.. ++++|+|.+|.|+ .+. .++ .+.+|+.|+|++|.|+.. + .+..+++|++|+            +++|+|+
T Consensus        15 ~~n~~-~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~------------L~~N~I~   77 (175)
T PF14580_consen   15 YNNPV-KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLD------------LSNNRIS   77 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--------------SS---
T ss_pred             ccccc-ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcc------------cCCCCCC
Confidence            34444 7899999999997 443 465 588999999999999843 2 466666776666            9999999


Q ss_pred             cccchhh-hccCCCCeeecccccCCCCCC-CCCCCCCCCCEEEcCCCCCccCCc---ccccCCCCCceecc
Q 046036          137 GNIPESL-ENLTSLQILNLSCNHLGGSIP-KPSGLFSTLSSIDFAHNNFNGSLP---LEVGSLSNTQELDF  202 (614)
Q Consensus       137 ~~~~~~~-~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l  202 (614)
                      . +.+.+ ..+++|++|+|++|+|...-. ..+..+++|+.|+|.+|.++...-   ..+..+++|+.||-
T Consensus        78 ~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   78 S-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             c-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            5 44445 468999999999999974321 345678888889999888874311   12456777877763

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.06  E-value=3.4e-10  Score=98.47  Aligned_cols=110  Identities=23%  Similarity=0.321  Sum_probs=81.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...-||+|||.. +|..+.....  ..++-.....++.++                  |.|.|++.+++.|++|||+++
T Consensus        73 dkkltlvfe~cdq-dlkkyfdsln--g~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglar  149 (292)
T KOG0662|consen   73 DKKLTLVFEFCDQ-DLKKYFDSLN--GDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLAR  149 (292)
T ss_pred             CceeEEeHHHhhH-HHHHHHHhcC--CcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhh
Confidence            4557899999998 8887765432  235554444444333                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCC-CCc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRP-TDE  512 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p-~~~  512 (614)
                      .++...       ...+..+-|.+|.| .+   ..-|+...|+||-||++.|+....+| |.+
T Consensus       150 afgipv-------rcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg  205 (292)
T KOG0662|consen  150 AFGIPV-------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG  205 (292)
T ss_pred             hcCCce-------EeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCC
Confidence            877543       23455677899977 44   45688899999999999999985555 443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=2.3e-11  Score=116.85  Aligned_cols=213  Identities=18%  Similarity=0.247  Sum_probs=151.9

Q ss_pred             cccCCCCCCeeeecCC---cccccCCcC-------CCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcc
Q 046036            6 EIGNLFRLQNLNFGNS---TVQGEIPSH-------LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQF   75 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n---~l~~~~p~~-------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l   75 (614)
                      .+.+.++|+..++++=   ++...+|++       +-.+++|++||||+|.|.-..+..|+.+-+-.+.|++|.|.+|.+
T Consensus        53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            3455677888887653   333445543       456779999999999998666666655433334899999999988


Q ss_pred             cccCC--------------CCCcCCCCCCEEeccCCcCccc----CCccccCCCCCCcccccccccccceEecCCCcccc
Q 046036           76 AGDIP--------------AGIPKYFNLIQLGLDRNCLAGS----IPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTG  137 (614)
Q Consensus        76 ~~~~p--------------~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~  137 (614)
                      . ...              .-.+.-++|+.+...+|++...    +...|...+.|+.+.            ++.|.|..
T Consensus       133 g-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr------------~~qN~I~~  199 (382)
T KOG1909|consen  133 G-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR------------LSQNGIRP  199 (382)
T ss_pred             C-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE------------EecccccC
Confidence            5 221              1234557899999999998632    234566677787776            99998862


Q ss_pred             ----ccchhhhccCCCCeeecccccCCCC----CCCCCCCCCCCCEEEcCCCCCccCCcccc-----cCCCCCceeccCC
Q 046036          138 ----NIPESLENLTSLQILNLSCNHLGGS----IPKPSGLFSTLSSIDFAHNNFNGSLPLEV-----GSLSNTQELDFSE  204 (614)
Q Consensus       138 ----~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~ls~  204 (614)
                          .+-..|..+++|+.|||..|-++..    +...+..+++|+.|++++|.+.......|     ...++|+.|.+.+
T Consensus       200 eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g  279 (382)
T KOG1909|consen  200 EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAG  279 (382)
T ss_pred             chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCc
Confidence                2345688999999999999999833    34557788999999999999986555444     3468899999999


Q ss_pred             ccCCCC----ccccccCcccchHHhccCccc
Q 046036          205 HMLSDE----IPITLGNRSKFEHLLLGGNMF  231 (614)
Q Consensus       205 N~l~~~----~~~~~~~l~~L~~L~L~~N~l  231 (614)
                      |.++..    +...+...+.|..|+|++|++
T Consensus       280 NeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  280 NEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            988742    222344566777777777777

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=4e-10  Score=126.70  Aligned_cols=253  Identities=25%  Similarity=0.301  Sum_probs=142.4

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEeccccc--CcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNN--LHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF   87 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~   87 (614)
                      ....+...+-+|.+. .++.... .++|++|-+..|.  +. .++..|  |..++ .|++|||++|.=-+.+|..++++-
T Consensus       522 ~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~-~is~~f--f~~m~-~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLL-EISGEF--FRSLP-LLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             hhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhh-hcCHHH--HhhCc-ceEEEECCCCCccCcCChHHhhhh
Confidence            456677777777776 4444443 3368888888885  44 333333  66777 788888888765567888888888


Q ss_pred             CCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCC--CCCCC
Q 046036           88 NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG--GSIPK  165 (614)
Q Consensus        88 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~  165 (614)
                      +|++|+|++..++ .+|..+++|+.|.+|+            +..+.-...+|.....|++|++|.+..-...  ...-.
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln------------l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~  662 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLN------------LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLK  662 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHHhhheec------------cccccccccccchhhhcccccEEEeeccccccchhhHH
Confidence            8888888888887 7788888888887777            6666554455555666777777777554321  11122


Q ss_pred             CCCCCCCCCEEEcCCCCC-------------------------ccCCcccccCCCCCceeccCCccCCCCccccccC---
Q 046036          166 PSGLFSTLSSIDFAHNNF-------------------------NGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGN---  217 (614)
Q Consensus       166 ~~~~l~~L~~L~Ls~N~l-------------------------~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~---  217 (614)
                      .+..+.+|+.+.......                         ....+..+..+.+|+.|.+.++.+..........   
T Consensus       663 el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~  742 (889)
T KOG4658|consen  663 ELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV  742 (889)
T ss_pred             hhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccch
Confidence            233344444433322221                         0122334455566666666666554322211111   


Q ss_pred             ---cccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCccc
Q 046036          218 ---RSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQ  282 (614)
Q Consensus       218 ---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  282 (614)
                         ++++..+...++... ..+.+..-.++|+.|.+.++.....+......+..+..+-+.++.+.+.
T Consensus       743 ~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  743 LLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             hhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence               222333322222211 2233333446677777776666555555555555555555555555544

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.91  E-value=3.3e-10  Score=117.46  Aligned_cols=109  Identities=23%  Similarity=0.307  Sum_probs=83.4

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCH-HHHHHH---HhhC--------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDL-AEGLKI---AVDI--------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~-~~~~~i---a~~i--------------~~NILld~~~~~kl~DfG  451 (614)
                      +..+...+++.+|..+|+|...+....   .++. ..+.-+   ++++              ++||++|.+|++|+.|||
T Consensus        66 fqt~~kl~l~ld~~rgg~lft~l~~~~---~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfg  142 (612)
T KOG0603|consen   66 FQTDGKLYLILDFLRGGDLFTRLSKEV---MFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFG  142 (612)
T ss_pred             eccccchhHhhhhcccchhhhccccCC---chHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCch
Confidence            345667899999999999999997643   1222 112211   1211              899999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cccCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++..-..+           ..|||..||| |........+|.|||||+++||+||-.||..
T Consensus       143 lske~v~~~-----------~~cgt~eymApEI~~gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  143 LSKEAVKEK-----------IACGTYEYRAPEIINGHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             hhhHhHhhh-----------hcccchhhhhhHhhhccCCcccchhhhhhHHHHhhCCCCCch
Confidence            999765432           1399999988 6644567889999999999999999999975

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.4e-09  Score=80.74  Aligned_cols=59  Identities=36%  Similarity=0.447  Sum_probs=27.8

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCc
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNC   98 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~   98 (614)
                      +|++|++++|+|+.+.+..   |.+++ +|++|++++|.++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~---f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDS---FSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTT---TTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHH---HcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444555555554333333   34443 44555555555544444445555555555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=2.6e-09  Score=79.26  Aligned_cols=60  Identities=35%  Similarity=0.540  Sum_probs=34.2

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcc
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQF   75 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l   75 (614)
                      +|++|++++|+|+...++.|.++++|++|++++|+++...|..   |.+++ +|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~---f~~l~-~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA---FSNLP-NLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT---TTTST-TESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH---HcCCC-CCCEEeCcCCcC
Confidence            4556666666666555555566666666666666665444444   45555 556666665543

...

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.82  E-value=8.2e-09  Score=101.97  Aligned_cols=131  Identities=21%  Similarity=0.253  Sum_probs=84.1

Q ss_pred             CCCCCCceeEEecccCCCchhhhccCCCCCcccCHHH-HHHHHh------hC------CCceeeCCC-CCeeeccccccc
Q 046036          389 DSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAE-GLKIAV------DI------PSNVLLDYD-MTAYVGDFGLAR  454 (614)
Q Consensus       389 ~~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~-~~~ia~------~i------~~NILld~~-~~~kl~DfGla~  454 (614)
                      +...++..++|+||++.-+..++...-. ...+.|-- -+-+|+      ||      |+|+|.+.. ..-.|.|||+|.
T Consensus       103 ~~rnnd~v~ivlp~~~H~~f~~l~~~l~-~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~  181 (418)
T KOG1167|consen  103 CFRNNDQVAIVLPYFEHDRFRDLYRSLS-LAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQ  181 (418)
T ss_pred             hhccCCeeEEEecccCccCHHHHHhcCC-HHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHH
Confidence            3456788999999999988888876432 11111110 011111      11      999999865 567899999997


Q ss_pred             ccCCCC------------------CCCC----------C------CC---cCcccccccccccc-cc---cCCCCccCce
Q 046036          455 FLPTNV------------------TNPM----------K------GQ---SNSAAVWGSIGYNM-EW---VARYQHKGKG  493 (614)
Q Consensus       455 ~~~~~~------------------~~~~----------~------~~---~~~~~~~gt~~y~a-E~---~~~~~~k~DV  493 (614)
                      ......                  ....          .      ..   ......+||+||.| |+   ...-+.+.||
T Consensus       182 ~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDi  261 (418)
T KOG1167|consen  182 RYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDI  261 (418)
T ss_pred             HHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccce
Confidence            221100                  0000          0      00   01124689999955 87   6677889999


Q ss_pred             eehhHHHHHHHhCCCCCCcccccCchH
Q 046036          494 YSCGILLLEIMTGKRPTDEMFADCLSL  520 (614)
Q Consensus       494 ySfGvvllElltG~~p~~~~~~~~~~l  520 (614)
                      ||.|||++-+++++.||-....+...+
T Consensus       262 ws~GVI~Lslls~~~PFf~a~dd~~al  288 (418)
T KOG1167|consen  262 WSAGVILLSLLSRRYPFFKAKDDADAL  288 (418)
T ss_pred             eeccceeehhhccccccccCccccchH
Confidence            999999999999999987654444433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.81  E-value=2.4e-09  Score=120.54  Aligned_cols=258  Identities=21%  Similarity=0.209  Sum_probs=129.3

Q ss_pred             CCCeeeecCCc--ccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           12 RLQNLNFGNST--VQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        12 ~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      +|++|-+..|.  +.....+.|..++.|+.|||++|.=-+.+|.+   ++++- +|++|+|++..++ .+|..+.++..|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~---I~~Li-~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS---IGELV-HLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH---Hhhhh-hhhcccccCCCcc-ccchHHHHHHhh
Confidence            45555555554  34333334555666666666655444455555   33444 5556666666655 555566666666


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCccccccccc-----------cc---ceEecCCCccccccchhhhccCCCC----e
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL-----------YS---FQLNLAENNLTGNIPESLENLTSLQ----I  151 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~-----------~l---~~L~L~~N~l~~~~~~~~~~l~~L~----~  151 (614)
                      .+|++..+.-...+|.....|.+|++|.+.....           ++   +.+.......  .+-..+..++.|.    .
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS  698 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence            6666655554434444455555665555322111           00   1111111111  0011122222222    2


Q ss_pred             eecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccC------CCCCceeccCCccCCCCccccccCcccchHHh
Q 046036          152 LNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGS------LSNTQELDFSEHMLSDEIPITLGNRSKFEHLL  225 (614)
Q Consensus       152 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~  225 (614)
                      +.+.++... ..+..++.+.+|+.|.+.++.+..........      ++++..+...++..- ..+...--.++|+.|+
T Consensus       699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~  776 (889)
T KOG4658|consen  699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLS  776 (889)
T ss_pred             hhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEE
Confidence            222233322 34556778888999999888886332222211      112222222222111 1122223457888888


Q ss_pred             ccCccccccCCccccCCCccceEEccCCcCccc-CCcccCCCCCCCEEECcCCc
Q 046036          226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGT-IPKELETLPFLENLNLSFNN  278 (614)
Q Consensus       226 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~  278 (614)
                      +..+.....+.+....+..+..+-+..+.+.+. .-...+.++++..+.+++=.
T Consensus       777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~  830 (889)
T KOG4658|consen  777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK  830 (889)
T ss_pred             EecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc
Confidence            888877666666666677777777777777765 34445555555555554433

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=5.3e-09  Score=113.67  Aligned_cols=173  Identities=17%  Similarity=0.165  Sum_probs=104.3

Q ss_pred             EEecccCCCchhhhccCCC--CCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeecccccccccCCCCC
Q 046036          398 LAFEFMPNGSLESWLHPNE--ATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFLPTNVT  461 (614)
Q Consensus       398 LV~Ey~~~GsL~~~L~~~~--~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~~~~~~  461 (614)
                      -+||||++ +|+..+....  .....++.. .++..|+              +.|++++.++.+||+|||.+....-...
T Consensus       398 ~~mE~~~~-Dlf~~~~~~~~~~~~e~~c~f-KqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e  475 (601)
T KOG0590|consen  398 QSMEYCPY-DLFSLVMSNGKLTPLEADCFF-KQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWE  475 (601)
T ss_pred             hhhhcccH-HHHHHHhcccccchhhhhHHH-HHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcc
Confidence            34999999 9999997642  111122211 1122222              9999999999999999999976543221


Q ss_pred             CCCCCCcCcccccccccccc-cc--cCCCC-ccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCChHHHHH
Q 046036          462 NPMKGQSNSAAVWGSIGYNM-EW--VARYQ-HKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVY  537 (614)
Q Consensus       462 ~~~~~~~~~~~~~gt~~y~a-E~--~~~~~-~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~  537 (614)
                      .   ........+|+-.|+| |.  ...+. .-.||||.|||+..|++|+.||..........   .......+..    
T Consensus       476 ~---~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~---~~~~~~~~~~----  545 (601)
T KOG0590|consen  476 K---NIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSF---KTNNYSDQRN----  545 (601)
T ss_pred             h---hhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccch---hhhccccccc----
Confidence            1   0133556899999977 76  44554 45899999999999999999997654432211   0000000000    


Q ss_pred             HHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHhH
Q 046036          538 SRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM--EMNVIK  594 (614)
Q Consensus       538 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i~  594 (614)
                             .... .    ...........-.+..+.++.+|.+|-||.+|++  .+++|.
T Consensus       546 -------~~~~-~----~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~  592 (601)
T KOG0590|consen  546 -------IFEG-P----NRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIE  592 (601)
T ss_pred             -------cccC-h----HHHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcc
Confidence                   0000 0    0011112222234555668999999999999985  455543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.77  E-value=3.3e-10  Score=118.22  Aligned_cols=179  Identities=26%  Similarity=0.302  Sum_probs=128.9

Q ss_pred             CcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCccc----------ccCCCCCcCCCCCCEEeccCC
Q 046036           28 PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFA----------GDIPAGIPKYFNLIQLGLDRN   97 (614)
Q Consensus        28 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~----------~~~p~~~~~l~~L~~L~L~~N   97 (614)
                      |-.+..+.+|+.|.|.++.|..     ..++..+...|+.|.- +|.+.          |.+..++ ....|...+.++|
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-----~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN  174 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-----AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYN  174 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-----hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchh
Confidence            5556778889999999988873     2223334445666654 33332          1222222 1347888899999


Q ss_pred             cCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCC-CCCCCCCCEE
Q 046036           98 CLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP-SGLFSTLSSI  176 (614)
Q Consensus        98 ~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L  176 (614)
                      .+. ....++.-++.|+.|+            |++|+++..  +.+..|++|++|||++|.+. .+|.. ...+ .|..|
T Consensus       175 ~L~-~mD~SLqll~ale~Ln------------LshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L  237 (1096)
T KOG1859|consen  175 RLV-LMDESLQLLPALESLN------------LSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLL  237 (1096)
T ss_pred             hHH-hHHHHHHHHHHhhhhc------------cchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheee
Confidence            998 6777888888888888            999999843  47889999999999999998 55543 2233 49999


Q ss_pred             EcCCCCCccCCcccccCCCCCceeccCCccCCCCc-cccccCcccchHHhccCcccc
Q 046036          177 DFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEI-PITLGNRSKFEHLLLGGNMFQ  232 (614)
Q Consensus       177 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  232 (614)
                      .+++|.++..  ..+.++.+|+.||+++|-|.+.- -..+..+..|..|+|.+|.+-
T Consensus       238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999998743  24678999999999999887532 223566788999999999885

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.73  E-value=8.9e-09  Score=93.42  Aligned_cols=123  Identities=21%  Similarity=0.277  Sum_probs=77.3

Q ss_pred             CceeEEecccCCCchhhhcc---CCCC-------CcccCHHHHHHH-HhhC-CCceeeCCC-CCeeecccccccccCCCC
Q 046036          394 DFKALAFEFMPNGSLESWLH---PNEA-------TRRLDLAEGLKI-AVDI-PSNVLLDYD-MTAYVGDFGLARFLPTNV  460 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~---~~~~-------~~~l~~~~~~~i-a~~i-~~NILld~~-~~~kl~DfGla~~~~~~~  460 (614)
                      ....||+||+.|-+....-.   ...-       -..|+.....-| .+++ |.|+++|.. -..++.|+|+|.+.....
T Consensus       108 ktpaLiFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~  187 (338)
T KOG0668|consen  108 KTPSLIFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK  187 (338)
T ss_pred             cCchhHhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCc
Confidence            34579999999977654432   1100       001111111111 1111 999999965 578999999999887764


Q ss_pred             CCCCCCCcCcccccccccc-cccc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          461 TNPMKGQSNSAAVWGSIGY-NMEW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       461 ~~~~~~~~~~~~~~gt~~y-~aE~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      .        ....+.+..| -||.   ...++..-|+|||||++.+|+..+.||-....+...++..+
T Consensus       188 e--------YnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIa  247 (338)
T KOG0668|consen  188 E--------YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIA  247 (338)
T ss_pred             e--------eeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHH
Confidence            3        2233444444 4576   56788889999999999999999999865333333344443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.69  E-value=1.2e-10  Score=121.32  Aligned_cols=168  Identities=24%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             CCCCcCCCCCCEEeccCCcCcccCCccccCC-CCCCcccc-----------------cccc---cccceEecCCCccccc
Q 046036           80 PAGIPKYFNLIQLGLDRNCLAGSIPFSIGKL-QNLQKLNP-----------------LATS---LYSFQLNLAENNLTGN  138 (614)
Q Consensus        80 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~l-----------------~~~~---~~l~~L~L~~N~l~~~  138 (614)
                      |-.+..+.+|+.|.|.++.+..  ...+..+ ..|++|--                 +.+.   ..|...+.+.|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            4456778889999888888763  1112111 12333310                 1010   13344445555555 4


Q ss_pred             cchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc-cccCCCCCceeccCCccCCCCccccccC
Q 046036          139 IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPL-EVGSLSNTQELDFSEHMLSDEIPITLGN  217 (614)
Q Consensus       139 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~~~~~~~~~~  217 (614)
                      ...++.-++.|+.|||++|+++.. . .+..++.|++|||++|.++ .+|. ....+. |+.|.+++|.++..  ..+.+
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence            445555555556666666655522 1 4455555555555555555 2221 112222 55555555555421  23445


Q ss_pred             cccchHHhccCccccccCC-ccccCCCccceEEccCCcCc
Q 046036          218 RSKFEHLLLGGNMFQGRIP-PFFGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       218 l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~  256 (614)
                      +.+|+.||++.|-|.+.-- ..++.+..|+.|+|.+|.+-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            5555555555555543111 11233444555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.57  E-value=5.2e-09  Score=87.35  Aligned_cols=52  Identities=31%  Similarity=0.480  Sum_probs=21.2

Q ss_pred             cCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCC
Q 046036          130 LAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNF  183 (614)
Q Consensus       130 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  183 (614)
                      |++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+..+|.+
T Consensus        84 l~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   84 LANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            4444444 33333444444444444444443 3333333333333344333333

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.54  E-value=5.9e-08  Score=99.33  Aligned_cols=121  Identities=21%  Similarity=0.260  Sum_probs=93.1

Q ss_pred             chHHHHHhhcCCCCCCCCCCceeEEeccc-CCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CC
Q 046036          375 PYDELLRATDGSSMDSGGNDFKALAFEFM-PNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PS  435 (614)
Q Consensus       375 ~~~~l~~at~~~~~~~~~~~~~~LV~Ey~-~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~  435 (614)
                      ++++|.+..+    .+.+.+++||+||-- ++-+|++++.-+   ..++..+...|..||                  -+
T Consensus       627 sH~NIlKlLd----fFEddd~yyl~te~hg~gIDLFd~IE~k---p~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikde  699 (772)
T KOG1152|consen  627 SHENILKLLD----FFEDDDYYYLETEVHGEGIDLFDFIEFK---PRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDE  699 (772)
T ss_pred             Cccchhhhhh----eeecCCeeEEEecCCCCCcchhhhhhcc---CccchHHHHHHHHHHHhccccccccCceecccccc
Confidence            3455555543    345678899999964 466999999754   358888877777777                  69


Q ss_pred             ceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCC
Q 046036          436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTD  511 (614)
Q Consensus       436 NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~  511 (614)
                      ||.+|.+|-+|+.|||-|.......         .-..+||.+|+| |+  +.+ ....-|||++||+||-++...-||.
T Consensus       700 nvivd~~g~~klidfgsaa~~ksgp---------fd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  700 NVIVDSNGFVKLIDFGSAAYTKSGP---------FDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             cEEEecCCeEEEeeccchhhhcCCC---------cceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            9999999999999999997665443         234889999976 87  333 3456799999999999999888875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=2.8e-08  Score=93.74  Aligned_cols=211  Identities=22%  Similarity=0.191  Sum_probs=110.5

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCcccc--cCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCC
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAG--DIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNL  113 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  113 (614)
                      -++.|.+.++.|....  .+..|+...+.++.|||.+|.|+.  .+...+.+++.|+.|+|+.|.+...+...-..+.+|
T Consensus        46 a~ellvln~~~id~~g--d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEG--DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             chhhheecCCCCCcch--hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            3445555555554222  122244444578888888888873  344456788888888888888875443222344555


Q ss_pred             CcccccccccccceEecCCCccccc-cchhhhccCCCCeeecccccCCCC--CCCCCCCCC-CCCEEEcCCCCCccCCcc
Q 046036          114 QKLNPLATSLYSFQLNLAENNLTGN-IPESLENLTSLQILNLSCNHLGGS--IPKPSGLFS-TLSSIDFAHNNFNGSLPL  189 (614)
Q Consensus       114 ~~L~l~~~~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~-~L~~L~Ls~N~l~~~~~~  189 (614)
                      +.|-            |.+..+... ....+..++.++.|.+|.|++...  ......... .+.+|.+           
T Consensus       124 ~~lV------------LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~-----------  180 (418)
T KOG2982|consen  124 RVLV------------LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ-----------  180 (418)
T ss_pred             EEEE------------EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc-----------
Confidence            5554            666665532 233456777888888888754411  111111111 2222222           


Q ss_pred             cccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccC-CccccCCCccceEEccCCcCccc-CCcccCCCC
Q 046036          190 EVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI-PPFFGSFKGTIDLNLSHNNLSGT-IPKELETLP  267 (614)
Q Consensus       190 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~  267 (614)
                          ++.+..+.++-|++...       ++++..+.+..|.+...- ...+..++.+..|+|+.|+|... .-+.+..++
T Consensus       181 ----~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~  249 (418)
T KOG2982|consen  181 ----LPCLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP  249 (418)
T ss_pred             ----CCcHHHHHHHHHhHHhh-------cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence                22333333333444322       233444455555443211 12233445555666666666532 124556667


Q ss_pred             CCCEEECcCCcCccc
Q 046036          268 FLENLNLSFNNFEGQ  282 (614)
Q Consensus       268 ~L~~L~ls~N~l~~~  282 (614)
                      .|..|.+++|++...
T Consensus       250 ~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  250 QLVDLRVSENPLSDP  264 (418)
T ss_pred             hhheeeccCCccccc
Confidence            777777777766544

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.49  E-value=1.1e-07  Score=95.56  Aligned_cols=136  Identities=15%  Similarity=0.139  Sum_probs=82.4

Q ss_pred             CCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCccccc-
Q 046036          441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFAD-  516 (614)
Q Consensus       441 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~-  516 (614)
                      .+..+||+|||-|......          .+.-.-|.-|.+ |+  +..|...+|+|||+|+.+||+||..-|+...++ 
T Consensus       389 ~di~vKIaDlGNACW~~kh----------FT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~  458 (590)
T KOG1290|consen  389 CDIRVKIADLGNACWVHKH----------FTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGEN  458 (590)
T ss_pred             cceeEEEeeccchhhhhhh----------hchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCC
Confidence            4578999999999875432          333456778955 88  889999999999999999999999988764332 


Q ss_pred             ----CchHHHHHHhh--CCCC-------hHHHHHHH--HhcCcCCCCCCchhhH------HHHHHHHHHHHHHhhccCCC
Q 046036          517 ----CLSLHNFCEMA--LPES-------VMELVYSR--LLQGVDKDAEDEPCMK------AKIRECLTSLGRIGIASLTE  575 (614)
Q Consensus       517 ----~~~l~~~~~~~--~~~~-------~~~~~~~~--l~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~C~~~  575 (614)
                          +..++..++..  +|..       -.+.+..+  +.....-.+.  +...      +.-.++..++.+...-.++.
T Consensus       459 Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~W--pL~~VL~eKY~~s~e~A~~fsdFL~PmLef  536 (590)
T KOG1290|consen  459 YSRDEDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPW--PLYEVLIEKYEWSEEDAQQFSDFLSPMLEF  536 (590)
T ss_pred             CCccHHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCC--cHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence                22333333221  1211       11222111  0000000000  0000      01134555666677778899


Q ss_pred             CccCCCCHHHHHH
Q 046036          576 TPNERMGVREMVM  588 (614)
Q Consensus       576 ~p~~RPsm~ev~~  588 (614)
                      +|++|||+.+.++
T Consensus       537 ~PeKR~tA~~cl~  549 (590)
T KOG1290|consen  537 DPEKRPTAAQCLK  549 (590)
T ss_pred             CccccccHHHHhc
Confidence            9999999998874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.48  E-value=8e-09  Score=86.28  Aligned_cols=107  Identities=24%  Similarity=0.345  Sum_probs=56.7

Q ss_pred             CcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCc-CCCCCCEEeccCCcCcccCCccccCCCCCCc
Q 046036           37 LTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIP-KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK  115 (614)
Q Consensus        37 L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  115 (614)
                      +..++|++|.+- .+++....+.... .|...+|++|.+. ..|..|. .++.++.|+|++|.|+ .+|..+..++.|+.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~-el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGY-ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCc-eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            444555555554 3444433333333 4555566666555 3333332 3345556666666655 55555555566555


Q ss_pred             ccccccccccceEecCCCccccccchhhhccCCCCeeecccccCC
Q 046036          116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG  160 (614)
Q Consensus       116 L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (614)
                      |+            ++.|.+. ..|..+..|.+|-.|+..+|.+.
T Consensus       105 lN------------l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 LN------------LRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cc------------cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            55            6666655 44555555666666666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.47  E-value=2.7e-08  Score=92.67  Aligned_cols=245  Identities=18%  Similarity=0.157  Sum_probs=145.7

Q ss_pred             cCCCCCCeeeecCCcccccCC----cCCCCCCCCcEEecccccCc---ccCCcCh----hhhccccccccEEEccCCccc
Q 046036            8 GNLFRLQNLNFGNSTVQGEIP----SHLSPTSKLTYLSLFSNNLH---GIIPPSL----DSFTNLSTKLRILDAGGNQFA   76 (614)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~---~~~p~~~----~~~~~l~~~L~~L~L~~N~l~   76 (614)
                      ..+..++.++||+|.|.....    ..+.+-.+|+..++++-...   ..++.++    ..+.+++ +|+..+||+|-|.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp-~l~~v~LSDNAfg  105 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCP-RLQKVDLSDNAFG  105 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCC-cceeeeccccccC
Confidence            346788999999999985433    34556677888877764222   1222221    1145666 8888888888887


Q ss_pred             ccCCCC----CcCCCCCCEEeccCCcCcccCCcccc-CCCCCCcccccccccccceEecCCCccccccc----hhhhccC
Q 046036           77 GDIPAG----IPKYFNLIQLGLDRNCLAGSIPFSIG-KLQNLQKLNPLATSLYSFQLNLAENNLTGNIP----ESLENLT  147 (614)
Q Consensus        77 ~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~----~~~~~l~  147 (614)
                      ...|..    +++-+.|++|.|++|.+.-.--.-++ .|.+|-+..-..+...++......|++..-..    ..|..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            655543    45667888888888877422112222 11112221112233345555677887762211    1233446


Q ss_pred             CCCeeecccccCCCCCCCC--------CCCCCCCCEEEcCCCCCccCC----cccccCCCCCceeccCCccCCCCccccc
Q 046036          148 SLQILNLSCNHLGGSIPKP--------SGLFSTLSSIDFAHNNFNGSL----PLEVGSLSNTQELDFSEHMLSDEIPITL  215 (614)
Q Consensus       148 ~L~~L~L~~N~l~~~~p~~--------~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~ls~N~l~~~~~~~~  215 (614)
                      +|+.+.+..|.|.   |..        +..+.+|+.|||.+|.|+-..    ...+..++.|+.|.+..|-++.....++
T Consensus       186 ~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         186 NLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             CceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            7788888888776   332        334677888888888776322    2334566777888888887765433322


Q ss_pred             ------cCcccchHHhccCccccccCCcc-------ccCCCccceEEccCCcCc
Q 046036          216 ------GNRSKFEHLLLGGNMFQGRIPPF-------FGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       216 ------~~l~~L~~L~L~~N~l~~~~p~~-------~~~l~~L~~L~Ls~N~l~  256 (614)
                            ...++|..|....|...+.+-..       -..++-|..|.+.+|++.
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence                  12467777777777765432221       135677778888888887

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.46  E-value=1.3e-07  Score=105.72  Aligned_cols=98  Identities=19%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.++++..   ..+++....+|+.++                  |+|||++.++.+||+|||++
T Consensus        75 ~~~~~~lVmEy~~g~~L~~li~~~---~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls  151 (669)
T cd05610          75 SANNVYLVMEYLIGGDVKSLLHIY---GYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLS  151 (669)
T ss_pred             ECCEEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCC
Confidence            356789999999999999999753   246777777777666                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGIL  499 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvv  499 (614)
                      +.......       ......+|+.|++ |.   .......+++|++|.-
T Consensus       152 ~~~~~~~~-------~~~~~~~t~~~~~pe~~~~~~~~~~~s~~~s~g~~  194 (669)
T cd05610         152 KVTLNREL-------NMMDILTTPSMAKPKNDYSRTPGQVLSLISSLGFN  194 (669)
T ss_pred             ccccCCcc-------cccccccCccccCccccccCCCCceeeeeeecCcC
Confidence            97654332       2345678999966 53   3444566788888854

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.45  E-value=9.5e-07  Score=89.79  Aligned_cols=116  Identities=33%  Similarity=0.415  Sum_probs=84.2

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeeccccccccc
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFGLARFL  456 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfGla~~~  456 (614)
                      .++|+||+.++++.+++........+.......++.++                  |+||+++... .++++|||+++..
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~  152 (384)
T COG0515          73 LYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLL  152 (384)
T ss_pred             EEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceec
Confidence            68999999999999777643210134444444444444                  8999999988 7999999999866


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--c---CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--V---ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~---~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .......... .......||..|++ |.  .   .......|+||+|++++++++|+.|+..
T Consensus       153 ~~~~~~~~~~-~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~  213 (384)
T COG0515         153 PDPGSTSSIP-ALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEG  213 (384)
T ss_pred             CCCCcccccc-ccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            5433210000 02356789999976 76  3   5788899999999999999999999654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=9.4e-08  Score=90.24  Aligned_cols=108  Identities=21%  Similarity=0.178  Sum_probs=71.7

Q ss_pred             cCCCCCCeeeecCCcccccCC-cCC-CCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcC
Q 046036            8 GNLFRLQNLNFGNSTVQGEIP-SHL-SPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK   85 (614)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~   85 (614)
                      +...-++.|.+.++.|...-. ..| ...+.++.|||.+|.|+. -.+.+.-+.++| .|++|+|+.|++...|-..-..
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-WseI~~ile~lP-~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HHHHHHHHhcCc-cceEeeccCCcCCCccccCccc
Confidence            334445566666666652211 122 356789999999999983 233333377888 9999999999998544322246


Q ss_pred             CCCCCEEeccCCcCccc-CCccccCCCCCCccc
Q 046036           86 YFNLIQLGLDRNCLAGS-IPFSIGKLQNLQKLN  117 (614)
Q Consensus        86 l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~  117 (614)
                      +.+|+.|-|.+..+.-. ....+..++.++.|+
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence            77999999988877532 233456777788776

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.23  E-value=6e-06  Score=81.38  Aligned_cols=117  Identities=21%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC--CCC--Ceee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD--YDM--TAYV  447 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld--~~~--~~kl  447 (614)
                      .+++...|+||.-.+. +|.+++-...   .-.|..++ |..|.                  +.|||+.  +|.  ...|
T Consensus       312 ~g~~~tlylvMkrY~~-tLr~yl~~~~---~s~r~~~~-~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVv  386 (598)
T KOG4158|consen  312 AGEPKTLYLVMKRYRQ-TLREYLWTRH---RSYRTGRV-ILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVV  386 (598)
T ss_pred             cCCCceEEEehhcchh-hHHHHHhcCC---CchHHHHH-HHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEE
Confidence            3456778999999998 9999997432   22343333 22222                  8999983  343  4579


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc-cC------C-CCccCceeehhHHHHHHHhCCCCCCc
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VA------R-YQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~------~-~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +|||.+-.-....-. ..-.+......|.-.-|| |. +.      . --.|+|.|+.|-+.||+++.+-||..
T Consensus       387 aDFGCcLAd~~hGlq-lpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~  459 (598)
T KOG4158|consen  387 ADFGCCLADDNHGLQ-LPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYK  459 (598)
T ss_pred             cccceeeeccccccc-cccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccc
Confidence            999997432211000 000111222334444455 76 21      1 12689999999999999999999986

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=2.1e-08  Score=94.55  Aligned_cols=175  Identities=23%  Similarity=0.215  Sum_probs=107.3

Q ss_pred             cccEEEccCCcccc-cCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCc-cccc-cc
Q 046036           64 KLRILDAGGNQFAG-DIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENN-LTGN-IP  140 (614)
Q Consensus        64 ~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~-l~~~-~~  140 (614)
                      .|++|||+.-.|+- .+-..+..+.+|+.|.|.++++...+...+.+-.+|+.|+            |+.+. ++.. ..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ln------------lsm~sG~t~n~~~  253 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLN------------LSMCSGFTENALQ  253 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeec------------cccccccchhHHH
Confidence            57888888777752 1223356677888888888888877777777777887777            55442 3311 12


Q ss_pred             hhhhccCCCCeeecccccCCCCCCCC-CC-CCCCCCEEEcCCCCCc---cCCcccccCCCCCceeccCCcc-CCCCcccc
Q 046036          141 ESLENLTSLQILNLSCNHLGGSIPKP-SG-LFSTLSSIDFAHNNFN---GSLPLEVGSLSNTQELDFSEHM-LSDEIPIT  214 (614)
Q Consensus       141 ~~~~~l~~L~~L~L~~N~l~~~~p~~-~~-~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~ls~N~-l~~~~~~~  214 (614)
                      --+.+++.|..|+|+.+.+....-.. .. --++|+.|+|++..-.   ..+..-...+++|.+||||.|. ++......
T Consensus       254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~  333 (419)
T KOG2120|consen  254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  333 (419)
T ss_pred             HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence            34678889999999988876432111 11 1256788888876421   1112223567888888888764 44333445


Q ss_pred             ccCcccchHHhccCccccccCCcc---ccCCCccceEEccC
Q 046036          215 LGNRSKFEHLLLGGNMFQGRIPPF---FGSFKGTIDLNLSH  252 (614)
Q Consensus       215 ~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~Ls~  252 (614)
                      |.+++.|++|.++.+..  ++|..   +...|.|.+||+-+
T Consensus       334 ~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  334 FFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            56667777777766653  45543   33445566665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.16  E-value=1.6e-07  Score=87.63  Aligned_cols=238  Identities=16%  Similarity=0.168  Sum_probs=163.2

Q ss_pred             CCCCCCCcEEecccccCcccCCcChhh-hccccccccEEEccCCccc---ccCC-------CCCcCCCCCCEEeccCCcC
Q 046036           31 LSPTSKLTYLSLFSNNLHGIIPPSLDS-FTNLSTKLRILDAGGNQFA---GDIP-------AGIPKYFNLIQLGLDRNCL   99 (614)
Q Consensus        31 ~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~l~~~L~~L~L~~N~l~---~~~p-------~~~~~l~~L~~L~L~~N~l   99 (614)
                      +..+..++.++||+|-|...-...+.. +.+-. +|+..++++--..   ..++       ..+.++++|+..+||+|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            345788999999999997554444322 34444 8888888764321   1222       3456889999999999999


Q ss_pred             cccCCccc----cCCCCCCcccccccccccceEecCCCccccccchhhh-------------ccCCCCeeecccccCCCC
Q 046036          100 AGSIPFSI----GKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE-------------NLTSLQILNLSCNHLGGS  162 (614)
Q Consensus       100 ~~~~p~~~----~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~-------------~l~~L~~L~L~~N~l~~~  162 (614)
                      ....|..+    +.-++|.+|.            |++|.+--.-..-++             +-+.|+......|++. .
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~------------l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-n  171 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLK------------LNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-N  171 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEE------------eecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-c
Confidence            87777654    4445666665            999988622222222             3478999999999997 3


Q ss_pred             CCCC-----CCCCCCCCEEEcCCCCCccCCc-----ccccCCCCCceeccCCccCCCCc----cccccCcccchHHhccC
Q 046036          163 IPKP-----SGLFSTLSSIDFAHNNFNGSLP-----LEVGSLSNTQELDFSEHMLSDEI----PITLGNRSKFEHLLLGG  228 (614)
Q Consensus       163 ~p~~-----~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~ls~N~l~~~~----~~~~~~l~~L~~L~L~~  228 (614)
                      .+..     +..-.+|+.+.+..|.|.-..-     ..+..+.+|+.|||..|.++-..    ...+..++.|+.|.+..
T Consensus       172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence            3322     2233589999999998863211     12345789999999999987532    34556678899999999


Q ss_pred             ccccccCCccc----c--CCCccceEEccCCcCcccCCcc-----c--CCCCCCCEEECcCCcCccc
Q 046036          229 NMFQGRIPPFF----G--SFKGTIDLNLSHNNLSGTIPKE-----L--ETLPFLENLNLSFNNFEGQ  282 (614)
Q Consensus       229 N~l~~~~p~~~----~--~l~~L~~L~Ls~N~l~~~~p~~-----~--~~l~~L~~L~ls~N~l~~~  282 (614)
                      |.++..-..++    .  ..++|..|-..+|...+.+...     +  ..+|-|..|.+.+|+|...
T Consensus       252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            98875443332    1  3488999999999887644322     1  3467788888999998754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.06  E-value=5.2e-06  Score=74.51  Aligned_cols=60  Identities=20%  Similarity=0.197  Sum_probs=27.5

Q ss_pred             cCCCCeeecccccCCCCC-CCCCCCCCCCCEEEcCCCCCccCCc---ccccCCCCCceeccCCc
Q 046036          146 LTSLQILNLSCNHLGGSI-PKPSGLFSTLSSIDFAHNNFNGSLP---LEVGSLSNTQELDFSEH  205 (614)
Q Consensus       146 l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~ls~N  205 (614)
                      +++|+.|.|.+|+|.... -..+..++.|++|.+-+|..+..--   --+..+++|+.||++.-
T Consensus        87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            344444444444443110 1123445555555555555542111   12455677777766543

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=98.05  E-value=1.4e-06  Score=85.05  Aligned_cols=108  Identities=22%  Similarity=0.309  Sum_probs=66.4

Q ss_pred             eeEEecccCCCchhhhcc---CCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          396 KALAFEFMPNGSLESWLH---PNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~---~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+++|+-+.. ||.+.+.   ... ....+....|+.+..|+                  |+|++++.+|.+.++||+-.
T Consensus       114 ~~~l~P~~~~-dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~  192 (288)
T PF14531_consen  114 RFLLMPRAQG-DLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIKPENFLLDQDGGVFLGDFSSL  192 (288)
T ss_dssp             EEEEEE--SE-EHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEE-TTS-EEE--GGGE
T ss_pred             hhhccchhhh-cHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEecccceeeEEEcCCCCEEEcChHHH
Confidence            4688888855 8888754   111 11234455555554444                  99999999999999999887


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---c-------CCCCccCceeehhHHHHHHHhCCCCCCccc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---V-------ARYQHKGKGYSCGILLLEIMTGKRPTDEMF  514 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~-------~~~~~k~DVySfGvvllElltG~~p~~~~~  514 (614)
                      ...+..          ......+.+|.| |.   .       ..++.+.|.|++|+++|.|.+|+.||+...
T Consensus       193 ~r~g~~----------~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~  254 (288)
T PF14531_consen  193 VRAGTR----------YRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSS  254 (288)
T ss_dssp             EETTEE----------EEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCG
T ss_pred             eecCce----------eeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCC
Confidence            644321          111233456777 55   1       257899999999999999999999998643

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.01  E-value=6.9e-05  Score=76.26  Aligned_cols=120  Identities=23%  Similarity=0.329  Sum_probs=88.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC-----CCeeec
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD-----MTAYVG  448 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~-----~~~kl~  448 (614)
                      .+++.++||+.+.- ||.+...... ...++-.+.++|+.++                  |+|+.++..     ..+.+.
T Consensus        92 ~~~~~~iVM~l~G~-sL~dl~~~~~-~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~ll  169 (322)
T KOG1164|consen   92 TEDFNFIVMSLLGP-SLEDLRKRNP-PGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLL  169 (322)
T ss_pred             CCceeEEEEeccCc-cHHHHHHhCC-CCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEE
Confidence            45688999998876 9999775443 4678888888888877                  999999865     458999


Q ss_pred             cccccc--ccCCCCCCCCCCCcC-cccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          449 DFGLAR--FLPTNVTNPMKGQSN-SAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       449 DfGla~--~~~~~~~~~~~~~~~-~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |||+++  ............... .....||..|++ ..  ....+.+.|+||.+-++.|+..|..||...
T Consensus       170 DfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~  240 (322)
T KOG1164|consen  170 DFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEAL  240 (322)
T ss_pred             ecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccc
Confidence            999998  332221110000111 234569999977 54  667888999999999999999999998653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.99  E-value=1.3e-05  Score=81.60  Aligned_cols=32  Identities=13%  Similarity=0.196  Sum_probs=16.9

Q ss_pred             CCCCEEEcCCCCCccCCcccccCCCCCceeccCCc
Q 046036          171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEH  205 (614)
Q Consensus       171 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  205 (614)
                      ++|++|++++|... ..|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45666666666544 2333222  45666666555

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=97.96  E-value=3.9e-06  Score=79.44  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=57.2

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeecccccccccCCC
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFLPTN  459 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~~~~  459 (614)
                      ...+|||||+++.+|.++..-       +.....+++..+              |+||+++.++ +++.|||..+.....
T Consensus       116 ~~~~lvmEyi~G~tL~~~~~~-------~~~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~  187 (232)
T PRK10359        116 HTYIMLIEYIEGVELNDMPEI-------SEDVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQR  187 (232)
T ss_pred             CCeEEEEEEECCccHHHhhhc-------cHHHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCcccccch
Confidence            457899999999999887431       112222222222              9999999988 999999998755332


Q ss_pred             CCCCCCCCcCcccccccccccccccCCCCccCceeehhHHHHHHH
Q 046036          460 VTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIM  504 (614)
Q Consensus       460 ~~~~~~~~~~~~~~~gt~~y~aE~~~~~~~k~DVySfGvvllEll  504 (614)
                      ..        .      --|.-|  ..+..++|+|||||.+.-..
T Consensus       188 ~a--------~------d~~vle--r~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        188 KA--------K------DRIDLE--RHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             hh--------H------HHHHHH--hHhcccccccceeEeehHHH
Confidence            11        0      012222  23457899999999987654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=5.3e-06  Score=56.32  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=23.4

Q ss_pred             CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCc
Q 046036           11 FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLH   48 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~   48 (614)
                      ++|++|+|++|+|+ .+|..|++|++|++|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35677777777777 34445677777777777777766

...

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.91  E-value=1e-05  Score=77.96  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=92.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-----Ceeecc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-----TAYVGD  449 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-----~~kl~D  449 (614)
                      +.+-.||+|.+.- ||++...-+  ++.++..+..-||++.                  |.|.|+...+     .+.+.|
T Consensus        96 G~~NiLVidLLGP-SLEDLFD~C--gR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiD  172 (449)
T KOG1165|consen   96 GKYNILVIDLLGP-SLEDLFDLC--GRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIID  172 (449)
T ss_pred             cchhhhhhhhhCc-CHHHHHHHh--cCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEe
Confidence            3455799999865 877776543  3468888888888877                  9999997543     478999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCccc
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMF  514 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~  514 (614)
                      ||+||.+-+.++..+.-+.......||..||. --  +..-+.+-|.=|+|-|+...+-|..||.+..
T Consensus       173 FGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLK  240 (449)
T KOG1165|consen  173 FGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  240 (449)
T ss_pred             ccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccccc
Confidence            99999987776654444444556789999988 33  6677888899999999999999999998753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=7.1e-06  Score=55.71  Aligned_cols=36  Identities=33%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCc
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLA  100 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  100 (614)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666667666666 45555666667777777766665

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=2.9e-05  Score=79.08  Aligned_cols=134  Identities=19%  Similarity=0.256  Sum_probs=83.8

Q ss_pred             cCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCC-cccccCCCCCcCC
Q 046036            8 GNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGN-QFAGDIPAGIPKY   86 (614)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N-~l~~~~p~~~~~l   86 (614)
                      ..+.+++.|++++|.|+ .+|. +  -.+|++|+++++.--..+|..   +   +.+|+.|++++| .+. .+|.     
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~---L---P~nLe~L~Ls~Cs~L~-sLP~-----  112 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGS---I---PEGLEKLTVCHCPEIS-GLPE-----  112 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCch---h---hhhhhheEccCccccc-cccc-----
Confidence            34678999999999888 5562 2  236999999874333366654   2   238889999988 554 4553     


Q ss_pred             CCCCEEeccCCcCc--ccCCccccCCCCCCcccccccccccceEecCCCc-cc-cccchhhhcc-CCCCeeecccccCCC
Q 046036           87 FNLIQLGLDRNCLA--GSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENN-LT-GNIPESLENL-TSLQILNLSCNHLGG  161 (614)
Q Consensus        87 ~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~-l~-~~~~~~~~~l-~~L~~L~L~~N~l~~  161 (614)
                       +|+.|+++.|...  +.+|.      +|+.|.            +.+++ .. ..+|.   .+ ++|++|++++|... 
T Consensus       113 -sLe~L~L~~n~~~~L~~LPs------sLk~L~------------I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-  169 (426)
T PRK15386        113 -SVRSLEIKGSATDSIKNVPN------GLTSLS------------INSYNPENQARIDN---LISPSLKTLSLTGCSNI-  169 (426)
T ss_pred             -ccceEEeCCCCCcccccCcc------hHhhee------------cccccccccccccc---ccCCcccEEEecCCCcc-
Confidence             5777778776643  12332      344444            43322 11 01111   12 68999999998866 


Q ss_pred             CCCCCCCCCCCCCEEEcCCCC
Q 046036          162 SIPKPSGLFSTLSSIDFAHNN  182 (614)
Q Consensus       162 ~~p~~~~~l~~L~~L~Ls~N~  182 (614)
                      ..|..+.  .+|+.|+++.|.
T Consensus       170 ~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        170 ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             cCccccc--ccCcEEEecccc
Confidence            4454433  589999998874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=3e-05  Score=69.79  Aligned_cols=103  Identities=21%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccc-hh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP-ES  142 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~-~~  142 (614)
                      +...+||++|.+. .+ ..|..++.|.+|.|++|+|+.+-|.--.-+++|+.|.            |.+|+|..... .-
T Consensus        43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~------------LtnNsi~~l~dl~p  108 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI------------LTNNSIQELGDLDP  108 (233)
T ss_pred             ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEE------------ecCcchhhhhhcch
Confidence            4445555555553 12 2345555555555555555544443333344454444            55555542111 12


Q ss_pred             hhccCCCCeeecccccCCCCCC---CCCCCCCCCCEEEcCC
Q 046036          143 LENLTSLQILNLSCNHLGGSIP---KPSGLFSTLSSIDFAH  180 (614)
Q Consensus       143 ~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~  180 (614)
                      +..+++|++|.+-+|..+..--   -.+..+++|+.||.+.
T Consensus       109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            4445555555555555542111   1133455555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=6.5e-07  Score=84.74  Aligned_cols=173  Identities=20%  Similarity=0.245  Sum_probs=110.5

Q ss_pred             cceEecCCCcccc-ccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCC-CccC-CcccccCCCCCceec
Q 046036          125 SFQLNLAENNLTG-NIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNN-FNGS-LPLEVGSLSNTQELD  201 (614)
Q Consensus       125 l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~  201 (614)
                      +++|||++-.|+. .+-.-+..+.+|+.|.|.++++.+.+-..++.-.+|+.|+|+.+. |+.. ...-+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            4455588887772 223346778888888898888887777778888888888888763 3311 112356788888999


Q ss_pred             cCCccCCCCccccc-c-CcccchHHhccCccc---cccCCccccCCCccceEEccCCc-CcccCCcccCCCCCCCEEECc
Q 046036          202 FSEHMLSDEIPITL-G-NRSKFEHLLLGGNMF---QGRIPPFFGSFKGTIDLNLSHNN-LSGTIPKELETLPFLENLNLS  275 (614)
Q Consensus       202 ls~N~l~~~~~~~~-~-~l~~L~~L~L~~N~l---~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ls  275 (614)
                      |+.+.++...-..+ . --++|..|+|++.+=   ...+..-....++|..||||+|. ++...-..|.+++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            98887764322111 1 125678888887542   11222233467888889998874 454444566778888888887


Q ss_pred             CCcCcccCCC----ccccCCCceEEEec
Q 046036          276 FNNFEGQLPS----MSVFTNTSVISIVG  299 (614)
Q Consensus       276 ~N~l~~~~p~----~~~~~~l~~~~~~~  299 (614)
                      .+.  +.+|.    ....+.+.++++.|
T Consensus       347 RCY--~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  347 RCY--DIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hhc--CCChHHeeeeccCcceEEEEecc
Confidence            764  34443    23344555555544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.81  E-value=1.4e-05  Score=88.36  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=72.2

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccC
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      .|||=+|..+ +|+|.|.-+   ..+...+..-||-|+                  .+|||++.=..+.++||.--|...
T Consensus        96 AylvRqyvkh-nLyDRlSTR---PFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtY  171 (1431)
T KOG1240|consen   96 AYLVRQYVKH-NLYDRLSTR---PFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTY  171 (1431)
T ss_pred             HHHHHHHHhh-hhhhhhccc---hHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCcc
Confidence            4788899988 999999743   245555555555555                  899999999999999998777543


Q ss_pred             CCCCCCCCCCcCccccccc----ccccc-cc-------------cCCCCccCceeehhHHHHHHHh-CCCCCC
Q 046036          458 TNVTNPMKGQSNSAAVWGS----IGYNM-EW-------------VARYQHKGKGYSCGILLLEIMT-GKRPTD  511 (614)
Q Consensus       458 ~~~~~~~~~~~~~~~~~gt----~~y~a-E~-------------~~~~~~k~DVySfGvvllEllt-G~~p~~  511 (614)
                      -.++.+    ...+-..-|    ..|+| |-             ....+.+.||||.|||+.||++ |++||.
T Consensus       172 LPeDNP----adf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~  240 (1431)
T KOG1240|consen  172 LPEDNP----ADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFT  240 (1431)
T ss_pred             CCCCCc----ccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCccc
Confidence            322221    111111111    12533 42             1136788999999999999999 677775

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.81  E-value=1.5e-05  Score=87.95  Aligned_cols=82  Identities=22%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             CCceeeCCCCCeeecccccccccCCCCC------CCC--CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHH
Q 046036          434 PSNVLLDYDMTAYVGDFGLARFLPTNVT------NPM--KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLE  502 (614)
Q Consensus       434 ~~NILld~~~~~kl~DfGla~~~~~~~~------~~~--~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllE  502 (614)
                      |.|.+++.-+++|+.|||+++.......      +..  ........++||+.|+| |+  ...|...+|.|++|+++||
T Consensus       171 pdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlye  250 (1205)
T KOG0606|consen  171 PDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYE  250 (1205)
T ss_pred             CCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHH
Confidence            9999999999999999999875321111      000  00112335799999977 88  5668889999999999999


Q ss_pred             HHhCCCCCCcccc
Q 046036          503 IMTGKRPTDEMFA  515 (614)
Q Consensus       503 lltG~~p~~~~~~  515 (614)
                      .+-|..||.++.+
T Consensus       251 FLVgcvpffGdtp  263 (1205)
T KOG0606|consen  251 FLVGCVPFFGDTP  263 (1205)
T ss_pred             HheeeeeccCCCH
Confidence            9999999987643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.77  E-value=1.2e-05  Score=75.48  Aligned_cols=68  Identities=26%  Similarity=0.331  Sum_probs=42.3

Q ss_pred             CCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCC--cccccCCCCCcCCCCCCEEeccCCcCc
Q 046036           27 IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGN--QFAGDIPAGIPKYFNLIQLGLDRNCLA  100 (614)
Q Consensus        27 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~  100 (614)
                      +....-.+..|+.|++.+..++     ++.+|..++ +|+.|.++.|  ++++.++.-...+++|++|+|++|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-----t~~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-----TLTNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhcccee-----ecccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            4444455566677776666666     333355665 7777777777  555545444455577777777777775

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.76  E-value=1.2e-05  Score=87.84  Aligned_cols=121  Identities=29%  Similarity=0.301  Sum_probs=85.6

Q ss_pred             CCCCCceeEEecccCCCchhhhc-cCCCCCcccCHHHH--------HHHHh---hC------CCceeeCCCC-Ceeeccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWL-HPNEATRRLDLAEG--------LKIAV---DI------PSNVLLDYDM-TAYVGDF  450 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L-~~~~~~~~l~~~~~--------~~ia~---~i------~~NILld~~~-~~kl~Df  450 (614)
                      ....++.+++.||..+|++++.+ +....+..-+-..+        +....   ++      |+|.+++..+ ..|++||
T Consensus        90 ~~~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df  169 (601)
T KOG0590|consen   90 SSSPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADF  169 (601)
T ss_pred             cCCCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCc
Confidence            34567889999999999999999 54321111111111        11111   12      8999999999 9999999


Q ss_pred             ccccccCC-CCCCCCCCCcCcccccc-cccccc-cc-c--CCCCccCceeehhHHHHHHHhCCCCCCcccc
Q 046036          451 GLARFLPT-NVTNPMKGQSNSAAVWG-SIGYNM-EW-V--ARYQHKGKGYSCGILLLEIMTGKRPTDEMFA  515 (614)
Q Consensus       451 Gla~~~~~-~~~~~~~~~~~~~~~~g-t~~y~a-E~-~--~~~~~k~DVySfGvvllElltG~~p~~~~~~  515 (614)
                      |+|..+.. ....     ......+| ++.|+| |. .  +......|+||.|+++.-+++|..|++....
T Consensus       170 ~~At~~~~~~g~~-----~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~  235 (601)
T KOG0590|consen  170 GLATAYRNKNGAE-----RSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSR  235 (601)
T ss_pred             hhhccccccCCcc-----eeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccc
Confidence            99987765 3321     33445678 999977 87 2  3556789999999999999999999876433

>PRK09188 serine/threonine protein kinase; Provisional

Probab=97.73  E-value=3.5e-05  Score=78.69  Aligned_cols=86  Identities=16%  Similarity=0.039  Sum_probs=51.3

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHH----HH-------hhC--CCceeeCCCCCeeecccccccccCCCC
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLK----IA-------VDI--PSNVLLDYDMTAYVGDFGLARFLPTNV  460 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~----ia-------~~i--~~NILld~~~~~kl~DfGla~~~~~~~  460 (614)
                      +..++|||||++++|... ...   ....|...+-    .+       .++  |+|||++.++.+||+|||+|+.+....
T Consensus        91 ~~~~LVmE~~~G~~L~~~-~~~---~~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~  166 (365)
T PRK09188         91 GKDGLVRGWTEGVPLHLA-RPH---GDPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRG  166 (365)
T ss_pred             CCcEEEEEccCCCCHHHh-Ccc---chHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecccCc
Confidence            357999999999999743 211   1122322111    11       112  899999999999999999999775432


Q ss_pred             CCCC-CCCcCcccccccccccc-cc
Q 046036          461 TNPM-KGQSNSAAVWGSIGYNM-EW  483 (614)
Q Consensus       461 ~~~~-~~~~~~~~~~gt~~y~a-E~  483 (614)
                      .... ..+...+...|++.|.+ |+
T Consensus       167 ~~~~~~~~~d~~~~~~~~~~~~pe~  191 (365)
T PRK09188        167 ALYRIAAYEDLRHLLKHKRTYAPDA  191 (365)
T ss_pred             chhhhhhhhhhhhhhccCccCCccc
Confidence            2100 00111235677777744 66

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.69  E-value=1.3e-05  Score=74.36  Aligned_cols=114  Identities=15%  Similarity=0.003  Sum_probs=67.3

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHH-H---HHHHHh-------hC--CCceeeCCCCCeeecccccccccCCCCC
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLA-E---GLKIAV-------DI--PSNVLLDYDMTAYVGDFGLARFLPTNVT  461 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~-~---~~~ia~-------~i--~~NILld~~~~~kl~DfGla~~~~~~~~  461 (614)
                      ..++||||+++++|.+.+...    .+.+. +   .++.+.       |+  |+|||++.++.++|.|||+|........
T Consensus        72 ~~~lvmeyI~G~~L~~~~~~~----~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~  147 (218)
T PRK12274         72 GRHLDRSYLAGAAMYQRPPRG----DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRAR  147 (218)
T ss_pred             CEEEEEeeecCccHHhhhhhh----hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcch
Confidence            358999999999998765321    12211 1   111111       11  7899999999999999999985443210


Q ss_pred             C------CCCCCcCcccccccccccc--cc--cCCCC-ccCceeehhHHHHHHHhCCCCCCc
Q 046036          462 N------PMKGQSNSAAVWGSIGYNM--EW--VARYQ-HKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       462 ~------~~~~~~~~~~~~gt~~y~a--E~--~~~~~-~k~DVySfGvvllElltG~~p~~~  512 (614)
                      -      .............++.|+.  |-  ....+ ...+.++-|.-+|.++||+.+.-.
T Consensus       148 ~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~  209 (218)
T PRK12274        148 WMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWE  209 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccc
Confidence            0      0000000011224566633  22  22233 455778999999999999998644

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.61  E-value=0.00023  Score=61.57  Aligned_cols=123  Identities=20%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             cccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcC
Q 046036            6 EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK   85 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~   85 (614)
                      .|.+.++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......   |.+++ +|+.+.+.+ .+.......|..
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~---F~~~~-~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNA---FSNCK-SLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTT---TTT-T-T-EEEEETS-TT-EE-TTTTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceee---eeccc-ccccccccc-cccccccccccc
Confidence            455667788887764 566666777777777888887765 55444444   66665 677777765 443344556667


Q ss_pred             CCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCC
Q 046036           86 YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQ  150 (614)
Q Consensus        86 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~  150 (614)
                      +++|+.+++..+ +.......|.+. +|+.+.            +.. .++......|.++++|+
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~------------~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN------------IPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-------------TT-B-SS----GGG------
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEE------------ECC-CccEECCccccccccCC
Confidence            778888877665 554555566665 666554            443 33334445566655553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.48  E-value=5.9e-05  Score=70.86  Aligned_cols=92  Identities=20%  Similarity=0.221  Sum_probs=67.5

Q ss_pred             CCCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccc--cCcccCCcChhhhccccccccEEEccCCccccc
Q 046036            1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSN--NLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGD   78 (614)
Q Consensus         1 g~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~   78 (614)
                      |.|..-.-.+.+|+.|++.+..++..  ..|-.|++|++|.+|.|  ++++.++..   ...++ +|++|+|++|++.  
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P-~l~~l~ls~Nki~--  104 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL---AEKAP-NLKVLNLSGNKIK--  104 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh---hhhCC-ceeEEeecCCccc--
Confidence            34555556677888888888888832  34677899999999999  777666655   45566 9999999999997  


Q ss_pred             CCCC---CcCCCCCCEEeccCCcCc
Q 046036           79 IPAG---IPKYFNLIQLGLDRNCLA  100 (614)
Q Consensus        79 ~p~~---~~~l~~L~~L~L~~N~l~  100 (614)
                      ++..   +..+.+|..|++.+|..+
T Consensus       105 ~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  105 DLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             cccccchhhhhcchhhhhcccCCcc
Confidence            2433   345667777777777655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.43  E-value=7.3e-05  Score=82.65  Aligned_cols=135  Identities=19%  Similarity=0.184  Sum_probs=94.4

Q ss_pred             cCCCCeeecccccCCC-CCCCCC-CCCCCCCEEEcCCCCCccC-CcccccCCCCCceeccCCccCCCCccccccCcccch
Q 046036          146 LTSLQILNLSCNHLGG-SIPKPS-GLFSTLSSIDFAHNNFNGS-LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFE  222 (614)
Q Consensus       146 l~~L~~L~L~~N~l~~-~~p~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~  222 (614)
                      -.+|++|++++...-. .-|..+ ..+|+|++|.+++=.+... .-....++++|..||+|+.+++..  ..++.+++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            3678888888865431 111112 3578999999988766432 223456789999999999998755  6788999999


Q ss_pred             HHhccCccccc-cCCccccCCCccceEEccCCcCcccC--C----cccCCCCCCCEEECcCCcCccc
Q 046036          223 HLLLGGNMFQG-RIPPFFGSFKGTIDLNLSHNNLSGTI--P----KELETLPFLENLNLSFNNFEGQ  282 (614)
Q Consensus       223 ~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~--p----~~~~~l~~L~~L~ls~N~l~~~  282 (614)
                      .|.+.+=.+.. ..-..+.+|++|+.||+|........  .    +....+|.|+.||.|++.+...
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            99988876652 11124567899999999998766322  1    2234589999999999887754

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=97.38  E-value=0.00015  Score=67.68  Aligned_cols=58  Identities=22%  Similarity=0.257  Sum_probs=41.4

Q ss_pred             eeEEecccCCCchhhh-ccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccccccc
Q 046036          396 KALAFEFMPNGSLESW-LHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~-L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      .+|||||++++++... +..    ..++.....+++.++                   |.||+++ ++.++++|||+++.
T Consensus        92 ~~lVmE~~~g~~~~~~~l~~----~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~~liDFG~a~~  166 (190)
T cd05145          92 NVLVMEFIGDDGSPAPRLKD----VPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKPYIIDVSQAVE  166 (190)
T ss_pred             CEEEEEEecCCCchhhhhhh----ccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCEEEEEccccee
Confidence            4899999999865443 332    234444554554444                   9999999 78999999999986


Q ss_pred             cCC
Q 046036          456 LPT  458 (614)
Q Consensus       456 ~~~  458 (614)
                      ...
T Consensus       167 ~~~  169 (190)
T cd05145         167 LDH  169 (190)
T ss_pred             cCC
Confidence            643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=97.36  E-value=0.00014  Score=67.63  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=41.4

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccccccc
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      .++||||++++++.......   ..+++....+++.++                   |+||+++ ++.+++.|||+|...
T Consensus        92 ~~iVmE~i~g~~l~~~~~~~---~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147          92 HVLVMEFIGDDGWAAPRLKD---APLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             CEEEEEEeCCCCCcchhhhc---CCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcEEEEEccccccC
Confidence            48999999998876553221   246666555555443                   9999998 478999999999654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.32  E-value=0.00047  Score=59.62  Aligned_cols=52  Identities=10%  Similarity=0.085  Sum_probs=18.6

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccc
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN  117 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  117 (614)
                      +|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++.+|+.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~   64 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESIT   64 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccc
Confidence            455555543 343333444555555555555443 3333333444444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.27  E-value=9.7e-05  Score=81.71  Aligned_cols=133  Identities=18%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             cccEEEccCCcccc-cCCCCC-cCCCCCCEEeccCCcCccc-CCccccCCCCCCcccccccccccceEecCCCccccccc
Q 046036           64 KLRILDAGGNQFAG-DIPAGI-PKYFNLIQLGLDRNCLAGS-IPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP  140 (614)
Q Consensus        64 ~L~~L~L~~N~l~~-~~p~~~-~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~  140 (614)
                      +|+.||+++...-. .-|..+ ..+|+|+.|.+++=.+... .-....++++|..||            +|+.+++..  
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLD------------IS~TnI~nl--  188 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLD------------ISGTNISNL--  188 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceee------------cCCCCccCc--
Confidence            67777777755321 111122 2466777777766444321 122344566666665            777777633  


Q ss_pred             hhhhccCCCCeeecccccCCC-CCCCCCCCCCCCCEEEcCCCCCccCC--c----ccccCCCCCceeccCCccCCCC
Q 046036          141 ESLENLTSLQILNLSCNHLGG-SIPKPSGLFSTLSSIDFAHNNFNGSL--P----LEVGSLSNTQELDFSEHMLSDE  210 (614)
Q Consensus       141 ~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~--~----~~~~~l~~L~~L~ls~N~l~~~  210 (614)
                      ..++.|++|+.|.+.+=.+.. ..-..+..+++|+.||+|........  .    +.-..+++|+.||.|++.+.+.
T Consensus       189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            566777777777766655442 11123556777777777776554221  0    1113467888888887776643

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.26  E-value=0.00016  Score=66.88  Aligned_cols=123  Identities=22%  Similarity=0.296  Sum_probs=89.1

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC---CCeeec
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD---MTAYVG  448 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~---~~~kl~  448 (614)
                      ..++++-.||||...- ||.+...-+.  ++++-.+.+-.|-|+                  |.|.|..-+   ....+.
T Consensus        80 ~~e~~ynvlVMdLLGP-sLEdLfnfC~--R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LI  156 (341)
T KOG1163|consen   80 GTEKDYNVLVMDLLGP-SLEDLFNFCS--RRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLI  156 (341)
T ss_pred             ccccccceeeeeccCc-cHHHHHHHHh--hhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEE
Confidence            3456778999999865 8988876432  245555554444444                  999998754   357799


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-c--ccCCCCccCceeehhHHHHHHHhCCCCCCcccc
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-E--WVARYQHKGKGYSCGILLLEIMTGKRPTDEMFA  515 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E--~~~~~~~k~DVySfGvvllElltG~~p~~~~~~  515 (614)
                      |||+||.+-+..+..+..+..-....||..|+. -  +...-+.+-|+=|.|-|+...--|+.||.+...
T Consensus       157 DFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka  226 (341)
T KOG1163|consen  157 DFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA  226 (341)
T ss_pred             eccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch
Confidence            999999887665544444445556789999966 2  245566778999999999999999999987543

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.10  E-value=0.00093  Score=64.81  Aligned_cols=116  Identities=15%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC--------------------CCceeeCCCCCeeec
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI--------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i--------------------~~NILld~~~~~kl~  448 (614)
                      +.+.....++.|||+.|++..+|++.. ....+....-.+.+-||                    ..-|.+..++-+|+.
T Consensus       141 ~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~ngLIkig  220 (458)
T KOG1266|consen  141 YEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIG  220 (458)
T ss_pred             cccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccccCCcchhheeecCCceEEec
Confidence            335566789999999999999997532 12233322223333333                    245666666667764


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCC
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKR  508 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~  508 (614)
                      --.-...-..-..   ........-.|-+||.+ |+  ....+..+|||+||...+||..+..
T Consensus       221 ~~ap~s~h~s~~~---~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEi  280 (458)
T KOG1266|consen  221 SVAPDSTHPSVNS---TREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEI  280 (458)
T ss_pred             ccCccccchhhhh---hhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHhee
Confidence            2111100000000   00001112345678855 77  4566778999999999999988754

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=96.90  E-value=0.0077  Score=60.74  Aligned_cols=109  Identities=10%  Similarity=0.129  Sum_probs=72.2

Q ss_pred             eEEecccCCCc-hhhhcc---CCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          397 ALAFEFMPNGS-LESWLH---PNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       397 ~LV~Ey~~~Gs-L~~~L~---~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      -+.|.-+++.. +..+..   .+......+|...++.+..+                  ++|+|+.++..+.+.|----.
T Consensus        86 GflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfq  165 (637)
T COG4248          86 GFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQ  165 (637)
T ss_pred             EEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEccccee
Confidence            45566555431 222222   22234568999988888877                  899999999888877622211


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhC-CCCCCcc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTG-KRPTDEM  513 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG-~~p~~~~  513 (614)
                      +. .++       ......+|...|.| |.       ....+...|-|.+||++++++.| +.||.+.
T Consensus       166 i~-~ng-------~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI  225 (637)
T COG4248         166 IN-ANG-------TLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGI  225 (637)
T ss_pred             ec-cCC-------ceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcc
Confidence            11 111       22334678888977 76       23556788999999999999997 9999864

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=96.86  E-value=0.0011  Score=62.12  Aligned_cols=58  Identities=19%  Similarity=0.073  Sum_probs=41.4

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeecccccccccC
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      ..++||||+++++|.+.....     .......+++.++              |+||++++++.++|+|||++.-..
T Consensus       105 ~~~lv~e~~~g~~L~~~~~~~-----~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         105 RHAVVMEYIDGVELYRVRVLE-----DPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             CceEEEEEeCCcchhhccccc-----cHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEECCccccCC
Confidence            458999999999998765411     1122223333322              999999999999999999996544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=4.7e-05  Score=71.77  Aligned_cols=84  Identities=23%  Similarity=0.217  Sum_probs=40.6

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCC--CCCcCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP--AGIPKYF   87 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p--~~~~~l~   87 (614)
                      +.+.+.|++.+|.|+++  .....++.|+.|.||-|+|+..-|     |..++ +|++|+|..|.|.. +.  ..+.+++
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-----l~rCt-rLkElYLRkN~I~s-ldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-----LQRCT-RLKELYLRKNCIES-LDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-----HHHHH-HHHHHHHHhccccc-HHHHHHHhcCc
Confidence            34455555555555532  123345555555555555553222     44444 55555555555542 11  1234455


Q ss_pred             CCCEEeccCCcCccc
Q 046036           88 NLIQLGLDRNCLAGS  102 (614)
Q Consensus        88 ~L~~L~L~~N~l~~~  102 (614)
                      +|+.|+|..|.-.|.
T Consensus        89 sLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGE  103 (388)
T ss_pred             hhhhHhhccCCcccc
Confidence            555555555544433

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=96.67  E-value=0.0017  Score=72.41  Aligned_cols=123  Identities=24%  Similarity=0.294  Sum_probs=80.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCC----CcccCHHHHHH----------HHhhC-CCceeeCCCCCeeecccccccccC
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEA----TRRLDLAEGLK----------IAVDI-PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~----~~~l~~~~~~~----------ia~~i-~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      ....+||++|..+|+|...||..+.    ..+-....+.+          +..+. |.|+|...++.-+++|||......
T Consensus       876 rsP~~L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg  955 (1205)
T KOG0606|consen  876 RSPLPLVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVG  955 (1205)
T ss_pred             CCCcchhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccc
Confidence            4457899999999999999986431    11111111111          11111 789999999999999998443221


Q ss_pred             CC---CCC---C------------------CCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCC
Q 046036          458 TN---VTN---P------------------MKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPT  510 (614)
Q Consensus       458 ~~---~~~---~------------------~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~  510 (614)
                      ..   ...   .                  .........+.||+.|.+ |.  .......+|.|++|++++|.++|..||
T Consensus       956 ~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~ 1035 (1205)
T KOG0606|consen  956 LIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPF 1035 (1205)
T ss_pred             cccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCC
Confidence            10   000   0                  000011234679999955 66  667778899999999999999999999


Q ss_pred             Ccccc
Q 046036          511 DEMFA  515 (614)
Q Consensus       511 ~~~~~  515 (614)
                      ....+
T Consensus      1036 na~tp 1040 (1205)
T KOG0606|consen 1036 NAETP 1040 (1205)
T ss_pred             CCcch
Confidence            87543

>PRK14879 serine/threonine protein kinase; Provisional

Probab=96.59  E-value=0.0018  Score=61.38  Aligned_cols=55  Identities=29%  Similarity=0.544  Sum_probs=42.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++++|.+++....      + .+..++.++                  |.||+++ ++.+++.|||.++
T Consensus        71 ~~~~~lv~e~~~G~~L~~~~~~~~------~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~  142 (211)
T PRK14879         71 PENFIIVMEYIEGEPLKDLINSNG------M-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAE  142 (211)
T ss_pred             CCCCEEEEEEeCCcCHHHHHHhcc------H-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCccc
Confidence            445789999999999999986431      1 334444333                  9999999 7889999999986


Q ss_pred             c
Q 046036          455 F  455 (614)
Q Consensus       455 ~  455 (614)
                      .
T Consensus       143 ~  143 (211)
T PRK14879        143 F  143 (211)
T ss_pred             C
Confidence            4

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.00015  Score=68.52  Aligned_cols=98  Identities=24%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccc-hh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP-ES  142 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~-~~  142 (614)
                      +.+.|++.++.|+. + .....|+.|+.|.||=|+|+..-  .|..+++|++|+            |..|.|...-- ..
T Consensus        20 ~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElY------------LRkN~I~sldEL~Y   83 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELY------------LRKNCIESLDELEY   83 (388)
T ss_pred             HhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccch--hHHHHHHHHHHH------------HHhcccccHHHHHH
Confidence            45556666666652 1 12345666666666666666433  255666666666            66666652211 23


Q ss_pred             hhccCCCCeeecccccCCCCCCCC-----CCCCCCCCEEE
Q 046036          143 LENLTSLQILNLSCNHLGGSIPKP-----SGLFSTLSSID  177 (614)
Q Consensus       143 ~~~l~~L~~L~L~~N~l~~~~p~~-----~~~l~~L~~L~  177 (614)
                      +.++++|+.|.|..|.-.|.-+..     +.-+|+|+.||
T Consensus        84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            567788888888888776654432     34567777765

>smart00090 RIO RIO-like kinase

Probab=96.40  E-value=0.0027  Score=61.27  Aligned_cols=59  Identities=20%  Similarity=0.205  Sum_probs=41.3

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccccccc
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      .++||||+++++|........   .+...+...++.++                   |+||+++ ++.+++.|||.++..
T Consensus       123 ~~lV~E~~~g~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      123 NVLVMEFIGGDGLPAPRLKDV---EPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             ceEEEEEecCCcccccccccC---CcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhhcc
Confidence            589999999999887653221   23332333333333                   9999999 889999999998755


Q ss_pred             CC
Q 046036          457 PT  458 (614)
Q Consensus       457 ~~  458 (614)
                      ..
T Consensus       199 ~~  200 (237)
T smart00090      199 DH  200 (237)
T ss_pred             CC
Confidence            43

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=96.36  E-value=0.0044  Score=59.94  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=42.9

Q ss_pred             eEEecccCC-CchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeeccccccccc
Q 046036          397 ALAFEFMPN-GSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       397 ~LV~Ey~~~-GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ++||||+++ ++|.+++...    .++.....+++..+              |.|||++.++.+++.|||.++..
T Consensus       122 ~lV~e~l~G~~~L~~~l~~~----~l~~~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        122 DILIERIEGARDLVALLQEA----PLSEEQWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             eEEEEecCCCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence            599999997 6999988642    24444444454444              99999999899999999998754

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=96.33  E-value=0.003  Score=59.24  Aligned_cols=57  Identities=23%  Similarity=0.395  Sum_probs=41.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeeccccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      .+..++||||+++++|.+++.....      ....+++..+              |.||+++ ++.+++.|||.++..
T Consensus        69 ~~~~~lv~e~~~g~~l~~~~~~~~~------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        69 PDNKTIVMEYIEGKPLKDVIEEGND------ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             CCCCEEEEEEECCccHHHHHhhcHH------HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            3456899999999999998864311      2222232222              9999999 789999999998653

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.23  E-value=0.0045  Score=70.03  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=79.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC-------CCCeee
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY-------DMTAYV  447 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~-------~~~~kl  447 (614)
                      .+.-+||+||.+.|+|.+++..   .+.++|...+.++.++                  |.|.+|..       ....+|
T Consensus       766 ~~~S~lv~ey~~~Gtlld~~N~---~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~l  842 (974)
T KOG1166|consen  766 QNASVLVSEYSPYGTLLDLINT---NKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYL  842 (974)
T ss_pred             CCcceeeeeccccccHHHhhcc---CCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEE
Confidence            4456899999999999999984   3457776665555544                  99999832       235799


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCC
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKR  508 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~  508 (614)
                      .|||-+--+..-..     ......+++|-++-- |.  +...+...|-|.++-+++-|+-|+.
T Consensus       843 IDfG~siDm~lfp~-----~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  843 IDFGRSIDMKLFPD-----GTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             EecccceeeeEcCC-----CcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            99999853321111     134566888888844 77  6778899999999999999999975

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=96.18  E-value=0.0035  Score=68.59  Aligned_cols=56  Identities=27%  Similarity=0.425  Sum_probs=39.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeeccccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ++..++||||+++++|.+++...     ..+  ..+++..+              |+|||+ +++.++|+|||+++..
T Consensus       408 ~~~~~lv~E~~~g~~L~~~l~~~-----~~~--~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        408 PEEKTIVMEYIGGKDLKDVLEGN-----PEL--VRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             CCCCEEEEEecCCCcHHHHHHHH-----HHH--HHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            44578999999999999988521     111  11122211              999999 5789999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	614
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-19
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-10
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-12
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		2e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		3e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		4e-06
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		4e-06
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-06
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		2e-05
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		2e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		3e-05
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		3e-05
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		4e-05
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		9e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		8e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		8e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		9e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 14/271 (5%)
Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +PQE+  +  L+ L    + + GEIPS LS  + L ++SL +N L G IP  +    N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
           L+    IL    N F+G+IPA +    +LI L L+ N   G+IP ++ K       N +A
Sbjct: 513 LA----ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 121 TSLYSFQLN---LAENNLTGNI-------PESLENLTSLQILNLSCNHLGGSIPKPSGLF 170
              Y +  N     E +  GN+        E L  L++    N++    GG         
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
            ++  +D ++N  +G +P E+GS+     L+   + +S  IP  +G+      L L  N 
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 231 FQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK 261
             GRIP    +     +++LS+NNLSG IP+
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 121/320 (37%), Gaps = 90/320 (28%)
Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
           +L+ L   GN+ +GD+   + +  NL  L +  N  +  IPF +G    LQ         
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ--------- 223
Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK------------------ 165
               L+++ N L+G+   ++   T L++LN+S N   G IP                   
Sbjct: 224 ---HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 280
Query: 166 -----PSGLFSTLSSIDFA------------------------HNNFNGSLPLE-VGSLS 195
                 SG   TL+ +D +                         NNF+G LP++ +  + 
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 196 NTQELDFSEHMLSDEIPITLGN---------------------------RSKFEHLLLGG 228
             + LD S +  S E+P +L N                           ++  + L L  
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSV 288
           N F G+IPP   +    + L+LS N LSGTIP  L +              EG++P   +
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 289 FTNTSVISIVGNGKLCGGVP 308
           +  T    I+    L G +P
Sbjct: 461 YVKTLETLILDFNDLTGEIP 480

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 14/271 (5%)
Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +PQE+  +  L+ L    + + GEIPS LS  + L ++SL +N L G IP  +    N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
           L+    IL    N F+G+IPA +    +LI L L+ N   G+IP ++ K       N +A
Sbjct: 516 LA----ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 121 TSLYSFQLN---LAENNLTGNI-------PESLENLTSLQILNLSCNHLGGSIPKPSGLF 170
              Y +  N     E +  GN+        E L  L++    N++    GG         
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
            ++  +D ++N  +G +P E+GS+     L+   + +S  IP  +G+      L L  N 
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 231 FQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK 261
             GRIP    +     +++LS+NNLSG IP+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 121/320 (37%), Gaps = 90/320 (28%)
Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
           +L+ L   GN+ +GD+   + +  NL  L +  N  +  IPF +G    LQ         
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ--------- 226
Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK------------------ 165
               L+++ N L+G+   ++   T L++LN+S N   G IP                   
Sbjct: 227 ---HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 283
Query: 166 -----PSGLFSTLSSIDFA------------------------HNNFNGSLPLE-VGSLS 195
                 SG   TL+ +D +                         NNF+G LP++ +  + 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 196 NTQELDFSEHMLSDEIPITLGN---------------------------RSKFEHLLLGG 228
             + LD S +  S E+P +L N                           ++  + L L  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETXXXXXXXXXXXXXXEGQLPSMSV 288
           N F G+IPP   +    + L+LS N LSGTIP  L +              EG++P   +
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 289 FTNTSVISIVGNGKLCGGVP 308
           +  T    I+    L G +P
Sbjct: 464 YVKTLETLILDFNDLTGEIP 483

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 106/260 (40%), Gaps = 42/260 (16%)
Query: 3   VPQEIGNLFRLQNLNFGN-STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
           +P  + NL  L  L  G  + + G IP  ++  ++L YL +   N+ G IP  L     L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
            T    LD   N  +G +P  I    NL+ +  D N ++G+IP S G    L        
Sbjct: 128 VT----LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT------ 177
Query: 122 SLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
                 + ++ N LTG IP +  NL                          L+ +D + N
Sbjct: 178 -----SMTISRNRLTGKIPPTFANLN-------------------------LAFVDLSRN 207
Query: 182 NFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS 241
              G   +  GS  NTQ++  +++ L+ ++   +G       L L  N   G +P     
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 242 FKGTIDLNLSHNNLSGTIPK 261
            K    LN+S NNL G IP+
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 112 NLQKLNPLATSLYSF-QLNL----AENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP 166
           NL K  P+ +SL +   LN       NNL G IP ++  LT L  L ++  ++ G+IP  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 167 SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSK-FEHLL 225
                TL ++DF++N  +G+LP  + SL N   + F  + +S  IP + G+ SK F  + 
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSG 257
           +  N   G+IPP F +      ++LS N L G
Sbjct: 181 ISRNRLTGKIPPTFANLNLAF-VDLSRNMLEG 211

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 30/137 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
           EFM NGSL+S+L  N+    +         +A G+K   D+          N+L++ ++ 
Sbjct: 88  EFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRALAARNILVNSNLV 147
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
             V DFGL+RFL  + ++P    + ++A+ G I   + W A       ++      +S G
Sbjct: 148 CKVSDFGLSRFLEDDTSDP----TYTSALGGKIP--IRWTAPEAIQYRKFTSASDVWSYG 201
Query: 498 ILLLEIMT-GKRPTDEM 513
           I++ E+M+ G+RP  +M
Sbjct: 202 IVMWEVMSYGERPYWDM 218

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 30/137 (21%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
           EFM NGSL+S+L  N+    +         +A G+K   D+          N+L++ ++ 
Sbjct: 114 EFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLV 173
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
             V DFGL+RFL  + ++P    + ++A+ G I   + W A       ++      +S G
Sbjct: 174 CKVSDFGLSRFLEDDTSDP----TYTSALGGKIP--IRWTAPEAIQYRKFTSASDVWSYG 227
Query: 498 ILLLEIMT-GKRPTDEM 513
           I++ E+M+ G+RP  +M
Sbjct: 228 IVMWEVMSYGERPYWDM 244

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
           E LR  Y E +    G   + GGN  K L  EF+P+GSL+ +L  N+   +++L + LK 
Sbjct: 63  EILRNLYHENIVKYKGICTEDGGNGIK-LIMEFLPSGSLKEYLPKNK--NKINLKQQLKY 119
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNS 470
           AV I                    NVL++ +    +GDFGL + + T+     +K   +S
Sbjct: 120 AVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDS 179
Query: 471 AAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT 505
              W +    M+  +++      +S G+ L E++T
Sbjct: 180 PVFWYAPECLMQ--SKFYIASDVWSFGVTLHELLT 212

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 370 EFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKI 429
           E LR  Y E +    G   + GGN  K L  EF+P+GSL+ +L  N+   +++L + LK 
Sbjct: 75  EILRNLYHENIVKYKGICTEDGGNGIK-LIMEFLPSGSLKEYLPKNK--NKINLKQQLKY 131
Query: 430 AVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNV-TNPMKGQSNS 470
           AV I                    NVL++ +    +GDFGL + + T+     +K   +S
Sbjct: 132 AVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDS 191
Query: 471 AAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMT 505
              W +    M+  +++      +S G+ L E++T
Sbjct: 192 PVFWYAPECLMQ--SKFYIASDVWSFGVTLHELLT 224

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 34/191 (17%)
Query: 396 KALAFEFMPNGSLESWLHPN-EATRRLDLAEGLKIAV--------------------DIP 434
           + L + +M NGS+ S L    E+   LD  +  +IA+                    D+ 
Sbjct: 110 RLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK 169
Query: 435 S-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVA--RYQHK 490
           + N+LLD +  A VGDFGLA+ +        K      AV G+IG+   E+++  +   K
Sbjct: 170 AANILLDEEFEAVVGDFGLAKLM------DYKDXHVXXAVRGTIGHIAPEYLSTGKSSEK 223
Query: 491 GKGYSCGILLLEIMTGKRPTD-EMFA--DCLSLHNFCEMALPESVMELVYSRLLQGVDKD 547
              +  G++LLE++TG+R  D    A  D + L ++ +  L E  +E +    LQG  KD
Sbjct: 224 TDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKD 283
Query: 548 AEDEPCMKAKI 558
            E E  ++  +
Sbjct: 284 EEVEQLIQVAL 294

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 34/191 (17%)
Query: 396 KALAFEFMPNGSLESWLHPN-EATRRLDLAEGLKIAV--------------------DI- 433
           + L + +M NGS+ S L    E+   LD  +  +IA+                    D+ 
Sbjct: 102 RLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK 161
Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVA--RYQHK 490
            +N+LLD +  A VGDFGLA+ +        K      AV G IG+   E+++  +   K
Sbjct: 162 AANILLDEEFEAVVGDFGLAKLM------DYKDXHVXXAVRGXIGHIAPEYLSTGKSSEK 215
Query: 491 GKGYSCGILLLEIMTGKRPTD-EMFA--DCLSLHNFCEMALPESVMELVYSRLLQGVDKD 547
              +  G++LLE++TG+R  D    A  D + L ++ +  L E  +E +    LQG  KD
Sbjct: 216 TDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKD 275
Query: 548 AEDEPCMKAKI 558
            E E  ++  +
Sbjct: 276 EEVEQLIQVAL 286

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 30/137 (21%)
Query: 401 EFMPNGSLESWLHPNE---------------ATRRLDLAEGLKIAVDIPS-NVLLDYDMT 444
           EFM NG+L+S+L  N+               A+    LAE   +  D+ + N+L++ ++ 
Sbjct: 97  EFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLV 156
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
             V DFGL+RFL  N ++P    + ++++ G I   + W A       ++      +S G
Sbjct: 157 CKVSDFGLSRFLEENSSDP----TETSSLGGKIP--IRWTAPEAIAFRKFTSASDAWSYG 210
Query: 498 ILLLEIMT-GKRPTDEM 513
           I++ E+M+ G+RP  +M
Sbjct: 211 IVMWEVMSFGERPYWDM 227

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGL-----------KIAVD 432
           S G+D   L + +MPNGSL   L   + T       R  +A+G             I  D
Sbjct: 100 SDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 158
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
           I S N+LLD   TA + DFGLAR         M  +     + G+  Y      R +   
Sbjct: 159 IKSANILLDEAFTAKISDFGLARASEKFAQTVMXSR-----IVGTTAYMAPEALRGEITP 213
Query: 492 KG--YSCGILLLEIMTGKRPTDE 512
           K   YS G++LLEI+TG    DE
Sbjct: 214 KSDIYSFGVVLLEIITGLPAVDE 236

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 30/137 (21%)
Query: 401 EFMPNGSLESWLHPNE---------------ATRRLDLAEGLKIAVDIPS-NVLLDYDMT 444
           EFM NG+L+S+L  N+               A+    LAE   +  D+ + N+L++ ++ 
Sbjct: 95  EFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLV 154
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKGYSCG 497
             V DFGL+RFL  N ++P    + ++++ G I   + W A       ++      +S G
Sbjct: 155 CKVSDFGLSRFLEENSSDP----TYTSSLGGKI--PIRWTAPEAIAFRKFTSASDAWSYG 208
Query: 498 ILLLEIMT-GKRPTDEM 513
           I++ E+M+ G+RP  +M
Sbjct: 209 IVMWEVMSFGERPYWDM 225

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGL-----------KIAVD 432
           S G+D   L + +MPNGSL   L   + T       R  +A+G             I  D
Sbjct: 100 SDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 158
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
           I S N+LLD   TA + DFGLAR         M  +     + G+  Y      R +   
Sbjct: 159 IKSANILLDEAFTAKISDFGLARASEKFAQTVMXXR-----IVGTTAYMAPEALRGEITP 213
Query: 492 KG--YSCGILLLEIMTGKRPTDE 512
           K   YS G++LLEI+TG    DE
Sbjct: 214 KSDIYSFGVVLLEIITGLPAVDE 236

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGL-----------KIAVD 432
           S G+D   L + +MPNGSL   L   + T       R  +A+G             I  D
Sbjct: 94  SDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 152
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
           I S N+LLD   TA + DFGLAR         M  +     + G+  Y      R +   
Sbjct: 153 IKSANILLDEAFTAKISDFGLARASEKFAQXVMXXR-----IVGTTAYMAPEALRGEITP 207
Query: 492 KG--YSCGILLLEIMTGKRPTDE 512
           K   YS G++LLEI+TG    DE
Sbjct: 208 KSDIYSFGVVLLEIITGLPAVDE 230

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 61/143 (42%), Gaps = 26/143 (18%)
Query: 390 SGGNDFKALAFEFMPNGSLESWLHPNEAT------RRLDLAEGL-----------KIAVD 432
           S G+D   L + + PNGSL   L   + T       R  +A+G             I  D
Sbjct: 91  SDGDDL-CLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHENHHIHRD 149
Query: 433 IPS-NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKG 491
           I S N+LLD   TA + DFGLAR      +         + + G+  Y      R +   
Sbjct: 150 IKSANILLDEAFTAKISDFGLAR-----ASEKFAQXVXXSRIVGTTAYXAPEALRGEITP 204
Query: 492 KG--YSCGILLLEIMTGKRPTDE 512
           K   YS G++LLEI+TG    DE
Sbjct: 205 KSDIYSFGVVLLEIITGLPAVDE 227

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
           E+M NGSL+S+L  ++A   +         +A G+K   D+          N+L++ ++ 
Sbjct: 126 EYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLV 185
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCGILL 500
             V DFGLAR L  +       +     + W S   I Y      ++      +S GI+L
Sbjct: 186 CKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYGIVL 240
Query: 501 LEIMT-GKRPTDEM 513
            E+M+ G+RP  EM
Sbjct: 241 WEVMSYGERPYWEM 254

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
           +  E+M NGSL+S+L  ++A   +         +A G+K   D+          N+L++ 
Sbjct: 94  IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 153
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
           ++   V DFGL+R L  +       +     + W S   I Y      ++      +S G
Sbjct: 154 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 208
Query: 498 ILLLEIMT-GKRPTDEM 513
           I+L E+M+ G+RP  EM
Sbjct: 209 IVLWEVMSYGERPYWEM 225

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 26/134 (19%)
Query: 401 EFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDYDMT 444
           E+M NGSL+S+L  ++A   +         +A G+K   D+          N+L++ ++ 
Sbjct: 126 EYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGFVHRDLAARNILINSNLV 185
Query: 445 AYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCGILL 500
             V DFGL+R L  +       +     + W S   I Y      ++      +S GI+L
Sbjct: 186 CKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYGIVL 240
Query: 501 LEIMT-GKRPTDEM 513
            E+M+ G+RP  EM
Sbjct: 241 WEVMSYGERPYWEM 254

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
           +  E+M NGSL+S+L  ++A   +         +A G+K   D+          N+L++ 
Sbjct: 111 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 170
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
           ++   V DFGL+R L  +       +     + W S   I Y      ++      +S G
Sbjct: 171 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 225
Query: 498 ILLLEIMT-GKRPTDEM 513
           I+L E+M+ G+RP  EM
Sbjct: 226 IVLWEVMSYGERPYWEM 242

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 398 LAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAVDI--------PSNVLLDY 441
           +  E+M NGSL+S+L  ++A   +         +A G+K   D+          N+L++ 
Sbjct: 123 IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182
Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WGS---IGYNMEWVARYQHKGKGYSCG 497
           ++   V DFGL+R L  +       +     + W S   I Y      ++      +S G
Sbjct: 183 NLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237
Query: 498 ILLLEIMT-GKRPTDEM 513
           I+L E+M+ G+RP  EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	614
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-22
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-17
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-16
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-10
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	7e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-10
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-12
3q4u_A	301	Activin receptor type-1; structural genomics conso	4e-12
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	5e-12
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	6e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	8e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-08
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-08
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-08
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	3e-08
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-08
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-08
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	4e-08
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	5e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	6e-08
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-08
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	6e-08
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	6e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	8e-08
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	9e-08
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-07
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-07
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-07
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-07
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-07
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-07
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-07
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-07
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	6e-07
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	6e-07
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	7e-07
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	8e-07
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	9e-07
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-06
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-06
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-06
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-06
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-06
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-06
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	7e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	9e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-05
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-05
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-05
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	7e-05
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	8e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-04
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-04
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-04
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-04
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-04
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  249 bits (639), Expect = 2e-78
 Identities = 84/311 (27%), Positives = 135/311 (43%), Gaps = 26/311 (8%)

Query: 4   PQEIGNLFRLQN----LNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHG--IIPPSLDS 57
            +++GN   L +     +  N T  G +    + T ++  L L   NL     IP SL +
Sbjct: 15  KKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN 74

Query: 58  FTNLSTKLRILD-AGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL 116
              L+     L   G N   G IP  I K   L  L +    ++G+IP  + +++ L   
Sbjct: 75  LPYLNF----LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV-- 128

Query: 117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLS-S 175
                      L+ + N L+G +P S+ +L +L  +    N + G+IP   G FS L  S
Sbjct: 129 ----------TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 176 IDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI 235
           +  + N   G +P    +L N   +D S +ML  +  +  G+    + + L  N     +
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 236 PPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVI 295
               G  K    L+L +N + GT+P+ L  L FL +LN+SFNN  G++P         V 
Sbjct: 238 GKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

Query: 296 SIVGNGKLCGG 306
           +   N  LCG 
Sbjct: 297 AYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  171 bits (437), Expect = 6e-49
 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 16/262 (6%)

Query: 51  IPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGS--IPFSIG 108
           I   L + T LS+ L   D     + G +     + + +  L L    L     IP S+ 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 109 KLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG 168
            L  L  L      +         NNL G IP ++  LT L  L ++  ++ G+IP    
Sbjct: 74  NLPYLNFLY-----IGGI------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGN-RSKFEHLLLG 227
              TL ++DF++N  +G+LP  + SL N   + F  + +S  IP + G+    F  + + 
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 228 GNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS 287
            N   G+IPP F +      ++LS N L G       +    + ++L+ N+    L  + 
Sbjct: 183 RNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 288 VFTNTSVISIVGNGKLCGGVPE 309
           +  N + + +  N ++ G +P+
Sbjct: 242 LSKNLNGLDLRNN-RIYGTLPQ 262

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  159 bits (404), Expect = 3e-44
 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 18/203 (8%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +P  +  +  L  L+F  + + G +P  +S    L  ++   N + G IP S  SF+ 
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
           L T    +    N+  G IP       NL  + L RN L G      G  +N QK     
Sbjct: 175 LFT---SMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQK----- 225

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
                  ++LA+N+L  ++   +    +L  L+L  N + G++P+       L S++ + 
Sbjct: 226 -------IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 181 NNFNGSLPLEVGSLSNTQELDFS 203
           NN  G +P + G+L       ++
Sbjct: 278 NNLCGEIP-QGGNLQRFDVSAYA 299

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  254 bits (652), Expect = 2e-75
 Identities = 92/336 (27%), Positives = 143/336 (42%), Gaps = 18/336 (5%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G +P  +G+L +L++L    + ++GEIP  L     L  L L  N+L G IP  L   +N
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL---SN 488

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN--- 117
             T L  +    N+  G+IP  I +  NL  L L  N  +G+IP  +G  ++L  L+   
Sbjct: 489 C-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 118 -----PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCN--HLGGSIPKPSGLF 170
                 +  +++     +A N + G     ++N    +  + + N     G   +     
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
           ST +  +     + G       +  +   LD S +MLS  IP  +G+      L LG N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 231 FQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFT 290
             G IP   G  +G   L+LS N L G IP+ +  L  L  ++LS NN  G +P M  F 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727

Query: 291 NTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHH 326
                  + N  LCG      L  C   ++    HH
Sbjct: 728 TFPPAKFLNNPGLCGYP----LPRCDPSNADGYAHH 759

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  224 bits (574), Expect = 2e-64
 Identities = 88/314 (28%), Positives = 129/314 (41%), Gaps = 24/314 (7%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIP-SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFT 59
           G VP   G+   L++L   ++   GE+P   L     L  L L  N   G +P S    T
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES---LT 364

Query: 60  NLSTKLRILDAGGNQFAGDIPAGIPKYF--NLIQLGLDRNCLAGSIPFSIGKLQNLQKLN 117
           NLS  L  LD   N F+G I   + +     L +L L  N   G IP ++     L    
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV--- 421

Query: 118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID 177
                     L+L+ N L+G IP SL +L+ L+ L L  N L G IP+      TL ++ 
Sbjct: 422 ---------SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 178 FAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP 237
              N+  G +P  + + +N   +  S + L+ EIP  +G       L L  N F G IP 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 238 FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP-SMSVFTNTSVIS 296
             G  +  I L+L+ N  +GTIP  +          ++ N   G+    +          
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECH 588

Query: 297 IVGNG-KLCGGVPE 309
             GN  +  G   E
Sbjct: 589 GAGNLLEFQGIRSE 602

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  219 bits (561), Expect = 2e-62
 Identities = 91/315 (28%), Positives = 137/315 (43%), Gaps = 28/315 (8%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G+V   +     L+ L+  ++     IP  L   S L +L +  N L G    ++ + T 
Sbjct: 192 GDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPL 119
           L    ++L+   NQF G IP    K  +L  L L  N   G IP  + G    L      
Sbjct: 249 L----KLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLT----- 297

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPS-GLFSTLSSIDF 178
                   L+L+ N+  G +P    + + L+ L LS N+  G +P  +      L  +D 
Sbjct: 298 -------GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 179 AHNNFNGSLPLEVGSLSNT-QELDFSEHMLSDEIPITLGNRSKF--EHLLLGGNMFQGRI 235
           + N F+G LP  + +LS +   LD S +  S  I   L    K   + L L  N F G+I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 236 PPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP-SMSVFTNTSV 294
           PP   +    + L+LS N LSGTIP  L +L  L +L L  N  EG++P  +        
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 295 ISIVGNGKLCGGVPE 309
           + +  N  L G +P 
Sbjct: 471 LILDFN-DLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  214 bits (548), Expect = 1e-60
 Identities = 82/318 (25%), Positives = 129/318 (40%), Gaps = 28/318 (8%)

Query: 1   GNVP--QEIGNLFRLQNLNFGNSTVQGEIP-SHLSPTSKLTYLSLFSNNLHGIIPPSLDS 57
           G V     +G+   L+ LN  ++T+      S     + L  L L +N++ G        
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 58  FTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN 117
                 +L+ L   GN+ +GD+        NL  L +  N  +  IP  +G    LQ   
Sbjct: 174 SDGC-GELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIP-FLGDCSALQ--- 226

Query: 118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID 177
                     L+++ N L+G+   ++   T L++LN+S N   G I  P     +L  + 
Sbjct: 227 ---------HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLS 275

Query: 178 FAHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP 236
            A N F G +P  + G+      LD S +     +P   G+ S  E L L  N F G +P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 237 P-FFGSFKGTIDLNLSHNNLSGTIPKELETLPF-LENLNLSFNNFEGQLPS---MSVFTN 291
                  +G   L+LS N  SG +P+ L  L   L  L+LS NNF G +      +    
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 292 TSVISIVGNGKLCGGVPE 309
              + +  N    G +P 
Sbjct: 396 LQELYLQNN-GFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  199 bits (508), Expect = 3e-55
 Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 20/312 (6%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
             V   + +L  L++L   NS + G +      ++ LT L L  N+L G +   L S  +
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTT-LTSLGS 124

Query: 61  LSTKLRILDAGGNQFAGDIPA-GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
            S  L+ L+   N         G  K  +L  L L  N ++G+            +L   
Sbjct: 125 CS-GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK-- 181

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA 179
                   L ++ N ++G++   +    +L+ L++S N+    IP   G  S L  +D +
Sbjct: 182 -------HLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231

Query: 180 HNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP-F 238
            N  +G     + + +  + L+ S +     IP         ++L L  N F G IP   
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFL 289

Query: 239 FGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISI- 297
            G+      L+LS N+  G +P    +   LE+L LS NNF G+LP  ++     +  + 
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 298 VGNGKLCGGVPE 309
           +   +  G +PE
Sbjct: 350 LSFNEFSGELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (458), Expect = 2e-48
 Identities = 72/316 (22%), Positives = 123/316 (38%), Gaps = 31/316 (9%)

Query: 8   GNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
             +  +   +   +     + S L   + L  L L +++++G +      F   +  L  
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS----GFKCSA-SLTS 104

Query: 68  LDAGGNQFAGDIPAG--IPKYFNLIQLGLDRNCLAGSIPFSIG-KLQNLQKLNPLATSLY 124
           LD   N  +G +     +     L  L +  N L      S G KL +L+          
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE---------- 154

Query: 125 SFQLNLAENNLTGNIPESLE---NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
              L+L+ N+++G              L+ L +S N + G +         L  +D + N
Sbjct: 155 --VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 210

Query: 182 NFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS 241
           NF+  +P  +G  S  Q LD S + LS +    +   ++ + L +  N F G IPP    
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--P 267

Query: 242 FKGTIDLNLSHNNLSGTIPKELET-LPFLENLNLSFNNFEGQLP-SMSVFTNTSVISIVG 299
            K    L+L+ N  +G IP  L      L  L+LS N+F G +P      +    +++  
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 300 NGKLCGGVPELRLLSC 315
           N    G +P   LL  
Sbjct: 328 N-NFSGELPMDTLLKM 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (399), Expect = 6e-41
 Identities = 59/290 (20%), Positives = 106/290 (36%), Gaps = 25/290 (8%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           VP ++     +  LN  ++ ++    ++ +  S+LT L +  N +  + P   +    L 
Sbjct: 19  VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP---ELCQKL- 72

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
             L++L+   N+ +           NL +L L  N +         K +NL         
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT------- 125

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLF--STLSSIDFAH 180
                L+L+ N L+     +   L +LQ L LS N +     +   +F  S+L  ++ + 
Sbjct: 126 -----LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLG---NRSKFEHLLLGGNMFQGRIPP 237
           N      P    ++     L  +   L   +   L      +   +L L  +        
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 238 FFGSFKGT--IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS 285
            F   K T    L+LS+NNL+         LP LE   L +NN +     
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  153 bits (388), Expect = 2e-39
 Identities = 70/360 (19%), Positives = 124/360 (34%), Gaps = 39/360 (10%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS- 62
                 L  L++LN  ++ + G   +  +    L YLSL SN+   +   + ++F +L+ 
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAH 380

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFS-IGKLQNLQKL----N 117
           + L IL+   N+ +           +L  L L  N +   +       L+N+ ++    N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 118 PLAT-SLYSFQ-------LNLAENNLTG--NIPESLENLTSLQILNLSCNHLGGSIPKPS 167
                +  SF        L L    L    + P   + L +L IL+LS N++        
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 168 GLFSTLSSIDFAHNN--------FNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRS 219
                L  +D  HNN          G     +  LS+   L+   +   +       +  
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 220 KFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELET-LPFLENLNLSFNN 278
           + + + LG N         F +      LNL  N ++    K        L  L++ FN 
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 279 FEGQLPSMSVF-----TNTSVISIVGNGKLCGGVPELR--------LLSCAIESSKKQIH 325
           F+    S++ F        + I  + +  LC   P             SC   +     H
Sbjct: 621 FDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAHHHHHH 680

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  150 bits (381), Expect = 1e-38
 Identities = 54/300 (18%), Positives = 98/300 (32%), Gaps = 17/300 (5%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLS---PTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           P     + RL  L   N  +   +   L      + +  LSL ++ L         +F  
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN---TTFLG 244

Query: 61  LS-TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
           L  T L +LD   N               L    L+ N +      S+  L N++ LN L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN-L 303

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA 179
             S    + +++  +L      S + L  L+ LN+  N + G           L  +  +
Sbjct: 304 KRSF--TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 180 HNNFNGSLPLEVGSLSNT-----QELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGR 234
           ++  +    L   +  +        L+ +++ +S             E L LG N     
Sbjct: 362 NSFTSLR-TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 235 IPP-FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTS 293
           +    +   +   ++ LS+N            +P L+ L L     +    S S F    
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (376), Expect = 5e-38
 Identities = 65/311 (20%), Positives = 106/311 (34%), Gaps = 32/311 (10%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
                   +L +L+ G +T+    P        L  L+L  N L  +      +F    T
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD---KTFAFC-T 97

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPL 119
            L  L    N           K  NLI L L  N L+ +   +  +L+NLQ+L    N +
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 120 AT---------SLYSFQ-LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL 169
                      +  S + L L+ N +    P     +  L  L L+   LG S+ +   L
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 170 FSTLSSI---DFAHNNFNGSLPLEVGSLSNT--QELDFSEHMLSDEIPITLGNRSKFEHL 224
               +SI     +++  + +       L  T    LD S + L+     +     + E+ 
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277

Query: 225 LLGGNMFQGRIPPFFGSFKGTIDLNLSHN---------NLSGTIPKELETLPFLENLNLS 275
            L  N  Q               LNL  +         +L        + L  LE+LN+ 
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 276 FNNFEGQLPSM 286
            N+  G   +M
Sbjct: 338 DNDIPGIKSNM 348

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  130 bits (328), Expect = 7e-32
 Identities = 52/258 (20%), Positives = 88/258 (34%), Gaps = 24/258 (9%)

Query: 34  TSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLG 93
           T            L  +         +L T + +L+   NQ      A   +Y  L  L 
Sbjct: 3   TVSHEVADCSHLKLTQVPD-------DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 94  LDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILN 153
           +  N ++   P    KL  L+             LNL  N L+    ++    T+L  L+
Sbjct: 56  VGFNTISKLEPELCQKLPMLKV------------LNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 154 LSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPI 213
           L  N +      P      L ++D +HN  + +       L N QEL  S + +      
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 214 TLGNR--SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKEL---ETLPF 268
            L     S  + L L  N  +   P  F +      L L++  L  ++ ++L        
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 269 LENLNLSFNNFEGQLPSM 286
           + NL+LS +       + 
Sbjct: 224 IRNLSLSNSQLSTTSNTT 241

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 37/189 (19%), Positives = 55/189 (29%), Gaps = 33/189 (17%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
            + P     L  L  L+  N+ +       L    KL  L L  NNL  +          
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK-------- 521

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
                       +   G     +    +L  L L+ N            L  L+      
Sbjct: 522 ------------HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI----- 564

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP-SGLFSTLSSIDFA 179
                  ++L  NNL         N  SL+ LNL  N +     K     F  L+ +D  
Sbjct: 565 -------IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 180 HNNFNGSLP 188
            N F+ +  
Sbjct: 618 FNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 27/159 (16%), Positives = 42/159 (26%), Gaps = 13/159 (8%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G     +  L  L  LN  ++              +L  + L  NNL+ +       F N
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA---SVFNN 582

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
               L+ L+   N             F NL +L +  N    +   SI    N       
Sbjct: 583 Q-VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE-SIAWFVNWINETHT 640

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNH 158
                   +    ++   N P              SC  
Sbjct: 641 -------NIPELSSHYLCNTPPHYHGFPVRLFDTSSCKD 672

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  155 bits (394), Expect = 1e-40
 Identities = 62/338 (18%), Positives = 111/338 (32%), Gaps = 45/338 (13%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGI--IPPSLDSF 58
                +  NL  L ++   N     ++P+ L    ++  +++  N       +     + 
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 59  TNLS--TKLRILDAGGNQFA-GDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK 115
            +     K++I+  G N      +   + K   L  L    N L G +P + G    L  
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA- 356

Query: 116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL--FSTL 173
                       LNLA N +T            ++ L+ + N L   IP        S +
Sbjct: 357 -----------SLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVM 404

Query: 174 SSIDFAHNNFNG-------SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLL 226
           S+IDF++N            L        N   ++ S + +S          S    + L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 227 GGNMFQGRIPPFFGSFKGTID-------LNLSHNNLSGTIPKELE--TLPFLENLNLSFN 277
            GNM                        ++L  N L+  +  +    TLP+L  ++LS+N
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 278 NFE------GQLPSMSVFTNTSVISIVGNGKLCGGVPE 309
           +F           ++  F   +     GN +     PE
Sbjct: 524 SFSKFPTQPLNSSTLKGFGIRNQRDAQGN-RTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (392), Expect = 3e-40
 Identities = 37/293 (12%), Positives = 93/293 (31%), Gaps = 29/293 (9%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
            + +  R+  L+       G +P  +   ++L  L+L S+              + +   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 66  RILDAGGNQFAGDIPAGIPK--YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
                    +        P+  + +LI+  ++ +    SI  S                 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT--------- 186

Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNF 183
              Q+    NN+T  + +++  LT L+   +  +         +            +   
Sbjct: 187 ---QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQ 237

Query: 184 NGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMF--------QGRI 235
             +  L+  +L +  +++        ++P  L    + + + +  N            + 
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 236 PPFFGSFKGTIDLNLSHNNL-SGTIPKELETLPFLENLNLSFNNFEGQLPSMS 287
                  +    + + +NNL +  +   L+ +  L  L   +N  EG+LP+  
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  153 bits (389), Expect = 8e-40
 Identities = 52/319 (16%), Positives = 96/319 (30%), Gaps = 35/319 (10%)

Query: 1   GNVPQEIGNLFRLQNLNF-GNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFT 59
                +     ++Q +    N+     + + L    KL  L    N L G +P    +F 
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFG 350

Query: 60  NLSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIP--FSIGKLQNLQKL 116
           +   KL  L+   NQ    IPA    +   +  L    N L   IP  F    +  +  +
Sbjct: 351 SE-IKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAI 407

Query: 117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
           +         ++   +      +  +     ++  +NLS N +     +     S LSSI
Sbjct: 408 D-----FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 177 DFAHNNFNG-------SLPLEVGSLSNTQELDFSEHMLSDEIP--ITLGNRSKFEHLLLG 227
           +   N                  +      +D   + L+ ++              + L 
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS 521

Query: 228 GNMFQGRIPPFFGSFKG------TIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
            N F    P    +             +   N      P+ +   P L  L +  N+   
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 282 QLPSMSVFTNTSVISIVGN 300
            +    +  N SV+ I  N
Sbjct: 581 -VNE-KITPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (370), Expect = 2e-37
 Identities = 39/297 (13%), Positives = 93/297 (31%), Gaps = 25/297 (8%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGI-IPPSLDSFTNLS 62
           P+ I      +         Q     +     +  +  L  + ++      S+   + ++
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDP---REDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
            K   +    N     +   + +   L Q  +  +           + +N +      T 
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 123 LYSF-------QLNLAENNLTGNIPESLENLTSLQILNLSCNHL--------GGSIPKPS 167
              +        + +        +P  L+ L  +Q++N++CN                 +
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 168 GLFSTLSSIDFAHNNF-NGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLL 226
            +   +  I   +NN     +   +  +     L+   + L  ++P   G+  K   L L
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360

Query: 227 GGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELE--TLPFLENLNLSFNNFEG 281
             N        F G  +   +L+ +HN L   IP   +  ++  +  ++ S+N    
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (355), Expect = 2e-35
 Identities = 48/297 (16%), Positives = 88/297 (29%), Gaps = 41/297 (13%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           V + +  L +L+    GNS    E            Y        +       D+  +L+
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLT 252

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCL--------AGSIPFSIGKLQNLQ 114
                ++         +P  +     +  + +  N                     + +Q
Sbjct: 253 D----VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 115 KLNPLATSLYSFQLNLAENNL-TGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTL 173
                        + +  NNL T  +  SL+ +  L +L    N L G +P        L
Sbjct: 309 I------------IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK-L 355

Query: 174 SSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITL--GNRSKFEHLLLGGNMF 231
           +S++ A+N          G     + L F+ + L   IP      + S    +    N  
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 232 QG-------RIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
                     + P          +NLS+N +S    +   T   L ++NL  N    
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (309), Expect = 2e-29
 Identities = 37/272 (13%), Positives = 77/272 (28%), Gaps = 44/272 (16%)

Query: 31  LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLI 90
           L+   ++T LSL      G +P +      L T+L +L  G +    +     PK     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA---IGQL-TELEVLALGSHGEKVNERLFGPK----- 127

Query: 91  QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL--ENLTS 148
                           I    + +            Q      +      +    E+ + 
Sbjct: 128 ---------------GISANMSDE------------QKQKMRMHYQKTFVDYDPREDFSD 160

Query: 149 LQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS 208
           L    ++ +    SI K S +    + I    NN    +   V  L+  ++         
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 209 DEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF 268
            E           E+               + + K   D+ + +      +P  L+ LP 
Sbjct: 220 AENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 269 LENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
           ++ +N++ N           +   +   +   
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (279), Expect = 9e-26
 Identities = 33/209 (15%), Positives = 58/209 (27%), Gaps = 18/209 (8%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSL----D 56
             +         + ++N  N+ +        S  S L+ ++L  N L  I   SL    +
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 57  SFTNLSTKLRILDAGGNQFAGDIPAGIPKYF--NLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
           +F N    L  +D   N+    +           L+ + L  N      P        L+
Sbjct: 483 NFKNT-YLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLK 539

Query: 115 KLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLS 174
                       Q +   N      PE +    SL  L +  N +   +     +   +S
Sbjct: 540 GFG------IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV--NEKITPNIS 590

Query: 175 SIDFAHNNFNGSLPLEVGSLSNTQELDFS 203
            +D   N         V            
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 19/163 (11%), Positives = 43/163 (26%), Gaps = 7/163 (4%)

Query: 129 NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG--- 185
           N   +        SL +   +  L+L      G +P   G  + L  +    +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 186 -SLPLEVGSLSNTQELDFSEHMLSDEIP--ITLGNRSKFEHLLLGGNMFQGRIPPFFGSF 242
              P  + +  + ++                   + S      +  +  Q  I       
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 243 KGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS 285
                +    NN++  + K +  L  L    +  + F  +   
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC 224

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 10/152 (6%)

Query: 169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG 228
           L     +++  + +  G       + +  +ELD    M   +  ++L +  +   L L G
Sbjct: 35  LKEIWDALNGKNWSQQGFGTQPGANWNFNKELD----MWGAQPGVSLNSNGRVTGLSLEG 90

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSG----TIPKELETLPFLENLNLSFNNFEGQLP 284
               GR+P   G       L L  +          PK +      E       +++    
Sbjct: 91  FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 285 SMSVFTNTSVIS--IVGNGKLCGGVPELRLLS 314
                 + S +    + +      + +   ++
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (342), Expect = 7e-34
 Identities = 50/308 (16%), Positives = 98/308 (31%), Gaps = 34/308 (11%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
            ++      L  + + +  + T++       S      +L L +          L S   
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLA--GSIPFSIGKLQNLQKLNP 118
           L+              G          +L  L L RN L+  G    S     +L+    
Sbjct: 330 LTF---------TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK---- 376

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS--- 175
                    L+L+ N +   +  +   L  L+ L+   ++L         +F +L +   
Sbjct: 377 --------YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIY 425

Query: 176 IDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEI-PITLGNRSKFEHLLLGGNMFQGR 234
           +D +H +   +       LS+ + L  + +   +   P           L L     +  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 235 IPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS--MSVFTNT 292
            P  F S      LN+SHNN         + L  L+ L+ S N+             ++ 
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 293 SVISIVGN 300
           + +++  N
Sbjct: 546 AFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (325), Expect = 1e-31
 Identities = 48/293 (16%), Positives = 86/293 (29%), Gaps = 34/293 (11%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
                +   LQ L+     +Q          S L+ L L  N +  +      +F+ LS 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGLS- 100

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAG-SIPFSIGKLQNLQKLNPLATS 122
            L+ L A     A      I     L +L +  N +    +P     L NL+        
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-------- 152

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQI----LNLSCNHLGGSIPKPSGLFSTLSSIDF 178
                L+L+ N +       L  L  + +    L+LS N +    P        L  +  
Sbjct: 153 ----HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTL 207

Query: 179 AHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHL---------LLGG 228
            +N  + ++       L+  +          +E  +   ++S  E L         L   
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
           + +   I   F         +L    +              ++L L    F  
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (310), Expect = 9e-30
 Identities = 52/325 (16%), Positives = 83/325 (25%), Gaps = 55/325 (16%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
                +L  L  L    + +Q       S  S L  L     NL  +         +L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHL-K 124

Query: 64  KLRILDAGGNQFAG-DIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
            L+ L+   N      +P       NL  L L  N +       +  L  +  LN     
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN----- 179

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK----------------- 165
                L+L+ N +    P + + +  L  L L  N    ++ K                 
Sbjct: 180 ---LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 166 -----------PSGLFSTLSSIDFAHNNFN------GSLPLEVGSLSNTQELDFSEHMLS 208
                             L ++                +      L+N          + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 209 DEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF 268
                       ++HL L    F         S K      L+  +  G        LP 
Sbjct: 296 RVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPS 348

Query: 269 LENLNLSFNNFEGQLPSMSVFTNTS 293
           LE L+LS N    +         T+
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTT 373

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (308), Expect = 2e-29
 Identities = 54/267 (20%), Positives = 79/267 (29%), Gaps = 30/267 (11%)

Query: 44  SNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSI 103
             N + I         NL    + LD   N            +  L  L L R  +    
Sbjct: 16  ELNFYKIPD-------NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 104 PFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSI 163
             +   L +L              L L  N +      +   L+SLQ L     +L    
Sbjct: 69  DGAYQSLSHLST------------LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 164 PKPSGLFSTLSSIDFAHNNFNG-SLPLEVGSLSNTQELDFSEHMLSDEIPITLGN----R 218
             P G   TL  ++ AHN      LP    +L+N + LD S + +       L       
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 219 SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKE-LETLPFLENLNLSFN 277
                L L  N      P  F   +    L L +N  S  + K  ++ L  LE   L   
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 278 NFEGQ----LPSMSVFTNTSVISIVGN 300
            F  +        S       ++I   
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (296), Expect = 6e-28
 Identities = 48/298 (16%), Positives = 93/298 (31%), Gaps = 24/298 (8%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTY----LSLFSNNLHGIIPPSLD 56
             +P+   NL  L++L+  ++ +Q    + L    ++      L L  N ++ I P    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP---G 195

Query: 57  SFTNLSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQK 115
           +F  +   L  L    N  + ++     +    L    L                  L+ 
Sbjct: 196 AFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS 175
           L  L    +        +    +I +    LT++   +L    +                
Sbjct: 254 LCNLTIEEFRLAYL---DYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQH 308

Query: 176 IDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM--FQG 233
           ++  +  F          L + + L F+          +  +    E L L  N   F+G
Sbjct: 309 LELVNCKFGQ---FPTLKLKSLKRLTFTS--NKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 234 RIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
                         L+LS N +  T+      L  LE+L+   +N +      SVF +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLS 419

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 5/149 (3%)

Query: 143 LENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDF 202
           +E + ++    +  N     IP    L  +  ++D + N           S    Q LD 
Sbjct: 4   VEVVPNITYQCMELNFY--KIP--DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 203 SEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKE 262
           S   +         + S    L+L GN  Q      F        L     NL+      
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 263 LETLPFLENLNLSFNNFEGQLPSMSVFTN 291
           +  L  L+ LN++ N  +        F+N
Sbjct: 120 IGHLKTLKELNVAHNLIQS-FKLPEYFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 6e-10
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 16/156 (10%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
           P     L  L  L+     ++   P+  +  S L  L++  NN   +         +L  
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL-- 520

Query: 64  KLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
             ++LD   N         +  +  +L  L L +N  A +       LQ ++        
Sbjct: 521 --QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWIKDQR----- 572

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNH 158
               QL +    +    P   + +  +  LN++C  
Sbjct: 573 ----QLLVEVERMECATPSDKQGM-PVLSLNITCQM 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (327), Expect = 8e-32
 Identities = 47/300 (15%), Positives = 80/300 (26%), Gaps = 24/300 (8%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
                 L  L  L+     +            +L  L L +N L  +      + +    
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE---TALSGP-K 105

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPL 119
            L+ L       +      +     L  L L  N ++          + L+ L    N +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 120 A----------TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL 169
                          +  LNL  N++ G I     +    Q LN         I K    
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 170 --FSTLSSIDFAHNNFNGSLPLEVGSLSNT--QELDFSEHMLSDEIPITLGNRSKFEHLL 225
               +L    F   +     P     L     + ++  +H   +    T    S  + L 
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS 285
           L        +P           L LS N             P L +L++  N    +L +
Sbjct: 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  126 bits (318), Expect = 8e-31
 Identities = 62/289 (21%), Positives = 97/289 (33%), Gaps = 28/289 (9%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
            +P  +  L  L+ L    +  +       S    LT+LS+  N     +        NL
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT--GCLENL 349

Query: 62  STKLRILDAGGNQ--FAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
              LR LD   +    +      +    +L  L L  N        +  +   L+     
Sbjct: 350 -ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL---- 404

Query: 120 ATSLYSFQLNLAENNLTGNIPES-LENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS--- 175
                   L+LA   L     +S  +NL  L++LNLS + L  S      LF  L +   
Sbjct: 405 --------LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE---QLFDGLPALQH 453

Query: 176 IDFAHNNFNGSLPLEVGSLSNT---QELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ 232
           ++   N+F      +  SL      + L  S   LS        +     H+ L  N   
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 233 GRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
                     KG   LNL+ N++S  +P  L  L     +NL  N  + 
Sbjct: 514 SSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (316), Expect = 2e-30
 Identities = 58/295 (19%), Positives = 106/295 (35%), Gaps = 25/295 (8%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTS--KLTYLSLFSNNLHGIIPPSLDSF 58
             +     +    Q+LNFG +     I   L  ++   L   +    +   I P   +  
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 59  TNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP 118
             +S  +  ++   + F          +  L +L L    L+  +P  +  L  L+KL  
Sbjct: 252 CEMS--VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV- 307

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS--- 175
                      L+ N        S  N  SL  L++  N     +   +G    L +   
Sbjct: 308 -----------LSANKFENLCQISASNFPSLTHLSIKGNTKRLELG--TGCLENLENLRE 354

Query: 176 IDFAHNNFNGS--LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG 233
           +D +H++   S    L++ +LS+ Q L+ S +              + E L L     + 
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 234 RIPP-FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS 287
           +     F +      LNLSH+ L  +  +  + LP L++LNL  N+F       +
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (314), Expect = 3e-30
 Identities = 55/297 (18%), Positives = 99/297 (33%), Gaps = 26/297 (8%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           +P  + N    + L F  + +     +  S    LT+L L    ++ I     D+F +  
Sbjct: 27  IPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE---DTFQSQ- 80

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN----- 117
            +L  L    N         +     L  L   +  ++      +   + L+ L      
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 118 ------PLATSLYSFQ-LNLAENNLTGNIPESLENLTSLQI--LNLSCNHLGGSIPKPSG 168
                 P        + L+   N +     E + +L       LNL+ N +   I   + 
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAF 199

Query: 169 LFSTLSSIDFAHNNFNGSLP--LEVGSLSNTQELDFSEHMLSDEIPITLGN--RSKFEHL 224
             +   S++F        +   L+  ++ +     F +    D  P           E +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 225 LLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
            L  + F       F  F G  +L+L+  +LS  +P  L  L  L+ L LS N FE 
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 47/265 (17%), Positives = 72/265 (27%), Gaps = 47/265 (17%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
           EIP  L  +     L    N L  I      +F+ L   L  LD                
Sbjct: 26  EIPGTLPNS--TECLEFSFNVLPTIQN---TTFSRL-INLTFLD---------------- 63

Query: 86  YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN 145
                   L R  +      +      L              L L  N L      +L  
Sbjct: 64  --------LTRCQIYWIHEDTFQSQHRLDT------------LVLTANPLIFMAETALSG 103

Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEH 205
             +L+ L      +      P     TL S+    N+ +     +       + LDF  +
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 206 MLSDEIPITLGN--RSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKEL 263
            +       + +  ++    L L GN   G I P          LN         I K L
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 264 E--TLPFLENLNLSFNNFEGQLPSM 286
           +  T+  L        + E   P++
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAV 247

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.6 bits (241), Expect = 4e-21
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 18/228 (7%)

Query: 66  RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYS 125
           +  +        +IP  +P   +   L    N L      +  +L NL            
Sbjct: 15  KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLT----------- 60

Query: 126 FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG 185
             L+L    +     ++ ++   L  L L+ N L             L  + F     + 
Sbjct: 61  -FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG- 244
              + + +    + L    + +S           K + L    N           S +  
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 245 -TIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
             + LNL+ N+++  I          ++LN         +      + 
Sbjct: 180 TNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.2 bits (214), Expect = 7e-18
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 19/198 (9%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
             ++ NL  LQ+LN   +              +L  L L    L      S   F NL  
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP--FQNL-H 425

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL------- 116
            L++L+   +               L  L L  N            LQ L +L       
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 117 NPLAT-------SLYSFQ-LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG 168
             L++       SL     ++L+ N LT +  E+L +L  +  LNL+ NH+   +P    
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 169 LFSTLSSIDFAHNNFNGS 186
           + S   +I+   N  + +
Sbjct: 545 ILSQQRTINLRQNPLDCT 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  130 bits (328), Expect = 9e-32
 Identities = 46/313 (14%), Positives = 90/313 (28%), Gaps = 46/313 (14%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           + + I  L +LQ + F NS       ++ +        +      +     S  +  +L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDL- 493

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAG---------SIPFSIGKLQNL 113
                ++         +P  +     L  L +  N              +         +
Sbjct: 494 ---TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 114 QKLNPLATSLYSFQLNLAENNLTGNIPES--LENLTSLQILNLSCNHLGGSIPKPSGLFS 171
           Q               +  NNL    P S  L+ +  L +L+   N +     +  G   
Sbjct: 551 Q------------IFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNV 595

Query: 172 TLSSIDFAHNNFNGSLPLEVGS-LSNTQELDFSEHMLSDEIP--ITLGNRSKFEHLLLGG 228
            L+ +   +N     +P +  +     + L FS + L   IP      +      +    
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653

Query: 229 NMFQG---RIPPFFGSFKGT--IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQL 283
           N        I      +KG     + LS+N +     +   T   +  + LS N     +
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI 712

Query: 284 PSMSVFTNTSVIS 296
           P  S+        
Sbjct: 713 PENSLKPKDGNYK 725

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  129 bits (326), Expect = 2e-31
 Identities = 55/358 (15%), Positives = 100/358 (27%), Gaps = 83/358 (23%)

Query: 1   GNVPQEIGNLFRLQNLNFGN---------STVQGEIPSHLSPTSKLTYLSLFSNNLHGII 51
             +P  + +L  LQ+LN                  +        K+    +  NNL    
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 52  PP--------------------SLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF-NLI 90
                                  L++F     KL  L    NQ    IP     +   + 
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTN-VKLTDLKLDYNQIEE-IPEDFCAFTDQVE 622

Query: 91  QLGLDRNCLAGSIP--FSIGKLQNLQKLN-----------PLATSLYSFQ------LNLA 131
            LG   N L   IP  F+   +  +  ++            ++ S+  ++      + L+
Sbjct: 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 132 ENNLTGNIPESLENLTSLQILNLSCNHLG-------GSIPKPSGLFSTLSSIDFAHNNFN 184
            N +     E     + +  + LS N +                    L++ID   N   
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 185 GSLP--LEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSF 242
            SL       +L     +D S +  S   P    N S+ +   +                
Sbjct: 742 -SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ------------- 786

Query: 243 KGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
                 +   N +    P  + T P L  L +  N+    +    +     ++ I  N
Sbjct: 787 -----RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDE-KLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (310), Expect = 2e-29
 Identities = 41/326 (12%), Positives = 101/326 (30%), Gaps = 35/326 (10%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
           ++ N  R+  L+      +G +P  +   ++L  LS  +++           F +     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL----FGDEELTP 373

Query: 66  RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYS 125
            + +   ++           Y   + L           P  +  ++   +++     L  
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRIS-----LKD 427

Query: 126 FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG 185
            Q+    N +T  I ++++ LT LQI+  + +             +        +     
Sbjct: 428 TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-----YAKQYE 481

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG---------RIP 236
           +  L   +L +  +++        ++P  L +  + + L +  N             R+ 
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 237 PFFGSFKGTIDLNLSHNNLSGTIPKE--LETLPFLENLNLSFNNFEGQLPSMSVFTNTSV 294
               +        + +NNL    P    L+ +  L  L+   N     L +       + 
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTD 599

Query: 295 ISIVGN------GKLCGGVPELRLLS 314
           + +  N         C    ++  L 
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLG 625

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (308), Expect = 3e-29
 Identities = 51/306 (16%), Positives = 96/306 (31%), Gaps = 42/306 (13%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
            +  Q +     LQ+    N  +   I      + K T +   +N +  I   ++   T 
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEM-KPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTK 449

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
           L    +I+    + F            +      D      +   S   L++L       
Sbjct: 450 L----QIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLT------ 494

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGG---------SIPKPSGLFS 171
                  + L        +P+ L +L  LQ LN++CN              +        
Sbjct: 495 ------DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 172 TLSSIDFAHNNFNGSLPLEV--GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGN 229
            +      +NN     P       +     LD   + +   +    G   K   L L  N
Sbjct: 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605

Query: 230 MFQGRIPPFFGSFKGTI-DLNLSHNNLSGTIPK--ELETLPFLENLNLSFNNFEGQLPSM 286
             +  IP  F +F   +  L  SHN L   IP     +++  + +++ S+N    +  ++
Sbjct: 606 QIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 287 SVFTNT 292
           S   + 
Sbjct: 664 SCSMDD 669

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (299), Expect = 4e-28
 Identities = 39/287 (13%), Positives = 86/287 (29%), Gaps = 28/287 (9%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
             G   +L +L    + ++       + T ++  L    N L  I  P++ +  ++   +
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI--PNIFNAKSV-YVM 646

Query: 66  RILDAGGNQFAGDIPAGIP------KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
             +D   N+        I       K  N   + L  N +             +  +   
Sbjct: 647 GSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII-- 703

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL--FSTLSSID 177
              L +  +     N       + +N   L  ++L  N L  S+           LS++D
Sbjct: 704 ---LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMD 759

Query: 178 FAHNNFNGSLPLEVGSLSNTQELDFSEH------MLSDEIPITLGNRSKFEHLLLGGNMF 231
            ++N F+ S P +  + S  +              +  + P  +        L +G N  
Sbjct: 760 VSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 232 QGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNN 278
           +  +            L+++ N         +          L ++ 
Sbjct: 819 RK-VDE--KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (279), Expect = 1e-25
 Identities = 40/277 (14%), Positives = 80/277 (28%), Gaps = 40/277 (14%)

Query: 15  NLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQ 74
           N N        +    L    ++T LSL      G +P ++   T L    ++L  G + 
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTEL----KVLSFGTHS 358

Query: 75  FAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENN 134
                                            G+L   ++L P  +     ++ +    
Sbjct: 359 ETV-----------------------------SGRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 135 LTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSL 194
           +  +  + L     LQ        +   I K S +    + I    N     +   +  L
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMK-PIKKDSRISLKDTQIGNLTNRI-TFISKAIQRL 447

Query: 195 SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNN 254
           +  Q + F+    + +                            + + K   D+ L +  
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWE-----DANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 255 LSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
               +P  L  LP L++LN++ N         + +T 
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 3e-17
 Identities = 31/193 (16%), Positives = 53/193 (27%), Gaps = 34/193 (17%)

Query: 4   PQEIGNLFRLQNLNFGN-------STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLD 56
            +       +  +   N                +   T  LT + L  N L  +      
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDF- 747

Query: 57  SFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDR------NCLAGSIPFSIGKL 110
             T L   L  +D   N F+   P        L   G+        N +    P  I   
Sbjct: 748 RATTL-PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805

Query: 111 QNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL- 169
            +L +L             +  N++   + E L     L IL+++ N    SI   S   
Sbjct: 806 PSLIQLQ------------IGSNDIR-KVDEKL--TPQLYILDIADNPN-ISIDVTSVCP 849

Query: 170 FSTLSSIDFAHNN 182
           +         ++ 
Sbjct: 850 YIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 1/148 (0%)

Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEH 205
           LT    + +        I     L +   ++D  +  +            N    +    
Sbjct: 251 LTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKELD 309

Query: 206 MLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELET 265
           M  D+  + L N  +   L L G   +GR+P   G       L+   ++ + +     + 
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 266 LPFLENLNLSFNNFEGQLPSMSVFTNTS 293
               +      +        M +  +  
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQR 397

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 2   NVPQEIGNLFRLQ------NLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSL 55
           + P +  N  +L+        +   + +  + P+ ++    L  L + SN++  +     
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE--- 823

Query: 56  DSFTNLSTKLRILDAGGNQF-AGDIPAGIPKY-FNLIQLGLDRNCLAGSIPF 105
                L+ +L ILD   N   + D+ +  P     +  L  D+         
Sbjct: 824 ----KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 1e-28
 Identities = 54/294 (18%), Positives = 90/294 (30%), Gaps = 37/294 (12%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGI--IPPSLDSFTN 60
               +    R  N +                 +      + +     +      L+  T 
Sbjct: 28  YHDVLSQWQRHYNADR-------NRWHSAWRQANSNNPQIETRTGRALKATADLLEDAT- 79

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
                  L+          P    +  +L  + +D   L   +P ++ +   L+ L    
Sbjct: 80  -QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT--- 133

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLS-CNHLG--------GSIPKPSGLFS 171
                    LA N L   +P S+ +L  L+ L++  C  L                    
Sbjct: 134 ---------LARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMF 231
            L S+         SLP  + +L N + L      LS  +   + +  K E L L G   
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 232 QGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS 285
               PP FG       L L   +   T+P ++  L  LE L+L       +LPS
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 3e-26
 Identities = 51/314 (16%), Positives = 88/314 (28%), Gaps = 36/314 (11%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
           G+      +    +NL F  ST        L   S+         N       S     N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVL---SQWQRHYNADRNR----WHSAWRQAN 54

Query: 61  LSTKLRILDAGGNQFAGDIPA-GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
                +I    G                  + L L    L    P    +L +LQ     
Sbjct: 55  S-NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH---- 108

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA 179
                   + +    L   +P++++    L+ L L+ N L  ++P      + L  +   
Sbjct: 109 --------MTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR 158

Query: 180 HNNFNGSLPLEVGS---------LSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
                  LP  + S         L N Q L      +   +P ++ N    + L +  + 
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217

Query: 231 FQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP-SMSVF 289
               + P         +L+L         P        L+ L L   +    LP  +   
Sbjct: 218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 290 TNTSVISIVGNGKL 303
           T    + + G   L
Sbjct: 277 TQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 5e-24
 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 31/238 (13%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
            P +   L  LQ++    + +  E+P  +   + L  L+L  N L   +P S+ S   L 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL- 152

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYF---------NLIQLGLDRNCLAGSIPFSIGKLQNL 113
              R L         ++P  +             NL  L L+   +  S+P SI  LQNL
Sbjct: 153 ---RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 114 QKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLS-CNHLGGSIPKPSGLFST 172
           + L             +  + L+  +  ++ +L  L+ L+L  C  L  + P   G  + 
Sbjct: 209 KSLK------------IRNSPLSA-LGPAIHHLPKLEELDLRGCTAL-RNYPPIFGGRAP 254

Query: 173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
           L  +     +   +LPL++  L+  ++LD    +    +P  +        +L+  ++
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (290), Expect = 3e-27
 Identities = 57/312 (18%), Positives = 103/312 (33%), Gaps = 34/312 (10%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           VP +I +    +N++   + ++       S  S+L +L L    +  I      ++  L 
Sbjct: 26  VPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED---KAWHGL- 79

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
             L  L   GN      P       +L  L      LA    F IG+L  L+K       
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK------- 132

Query: 123 LYSFQLNLAENNLTG-NIPESLENLTSLQILNLSCNHLGGSIPKP----SGLFSTLSSID 177
                LN+A N +    +P    NLT+L  ++LS N++                   S+D
Sbjct: 133 -----LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 178 FAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIP-ITLGNRSKFEHLLLGGNMFQGRIP 236
            + N  +  +  +        EL    +  S  I    L N +      L    F+    
Sbjct: 188 MSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 237 ---PFFGSFKG-----TIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSV 288
                    +G       +  L++ N       +   L  +  ++L+  + +  L  +  
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPK 305

Query: 289 FTNTSVISIVGN 300
                 +SI+  
Sbjct: 306 HFKWQSLSIIRC 317

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (279), Expect = 7e-26
 Identities = 48/291 (16%), Positives = 89/291 (30%), Gaps = 26/291 (8%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
             +   L  +  ++     V  +    +    K   LS+    L       L        
Sbjct: 278 IVKFHCLANVSAMSLAG--VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL-------P 328

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLA--GSIPFSIGKLQNLQKL----N 117
            L+ L    N+ +           +L  L L RN L+  G   +S     +L+ L    N
Sbjct: 329 FLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 118 PLATSLYSFQ-------LNLAENNLTGNIPES-LENLTSLQILNLSCNHLGGSIPKPSGL 169
                  +F        L+   + L      S   +L  L  L++S  +           
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 170 FSTLSSIDFAHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG 228
            ++L+++  A N+F  +    V  + +N   LD S+  L            + + L +  
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNF 279
           N         +        L+ S N +  +          L   NL+ N+ 
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (265), Expect = 4e-24
 Identities = 52/297 (17%), Positives = 89/297 (29%), Gaps = 34/297 (11%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
            +    L  L NL    + +Q   P   S  + L  L      L  +          L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES---FPIGQL-I 128

Query: 64  KLRILDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
            L+ L+   N         +P YF    NL+ + L  N +       +  L+   ++N  
Sbjct: 129 TLKKLNVAHNFIHS---CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN-- 183

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL-FSTLSSIDF 178
                   L+++ N +   I +       L  L L  N    +I K      + L     
Sbjct: 184 ------LSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 179 AHNNFNGSLPLEVGSLS--------NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
               F     LE+   S           E   +      +  +     +    + L G  
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 231 FQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS 287
            +  +      FK    L++    L    P     LPFL++L L+ N        ++
Sbjct: 297 IK-YLEDVPKHFKWQS-LSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (251), Expect = 2e-22
 Identities = 55/303 (18%), Positives = 91/303 (30%), Gaps = 20/303 (6%)

Query: 4   PQEIGNLFRLQNLNF-GNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
              IG L  L+ LN   N     ++P++ S  + L ++ L  N +  I    L       
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIP-FSIGKLQNLQKLNPLAT 121
                LD   N     I     +   L +L L  N  + +I    +  L  L     +  
Sbjct: 181 QVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 122 SLYSFQLNLAENNLTGNIPESLENLTSLQI--LNLSCNHLGGSIPKPSGLFSTLSSIDFA 179
                       NL    P  +E L  + I    L+  +            + +S++  A
Sbjct: 240 EFKDE------RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 180 HNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF 239
             +      +        Q L      L     + L      + L L  N  +G I    
Sbjct: 294 GVSIKYLEDVP--KHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMN--KGSISFKK 346

Query: 240 GSFKGTIDLNLSHNNLSGTIPK--ELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISI 297
            +      L+LS N LS +            L +L+LSFN       +         +  
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406

Query: 298 VGN 300
             +
Sbjct: 407 QHS 409

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.7 bits (249), Expect = 3e-22
 Identities = 47/252 (18%), Positives = 79/252 (31%), Gaps = 21/252 (8%)

Query: 8   GNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS-TKLR 66
            +L  L++L    +  +G I         L+YL L  N L         S+++L    LR
Sbjct: 325 LDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGC---CSYSDLGTNSLR 379

Query: 67  ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFS-IGKLQNLQKLNPLATSLYS 125
            LD   N     + A       L  L    + L     FS    L+ L  L+        
Sbjct: 380 HLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD-------- 430

Query: 126 FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPS-GLFSTLSSIDFAHNNFN 184
               ++  N   +       LTSL  L ++ N    +         + L+ +D +     
Sbjct: 431 ----ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 185 GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG 244
                   +L   Q L+ S + L                L    N  +          K 
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 245 TIDLNLSHNNLS 256
               NL++N+++
Sbjct: 547 LAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.7 bits (249), Expect = 4e-22
 Identities = 52/263 (19%), Positives = 77/263 (29%), Gaps = 29/263 (11%)

Query: 28  PSHLSP---TSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIP 84
           P  L+P                L  +         ++ +  + +D   N           
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSKVPD-------DIPSSTKNIDLSFNPLKILKSYSFS 53

Query: 85  KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE 144
            +  L  L L R  +      +   L +L  L             L  N +    P S  
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI------------LTGNPIQSFSPGSFS 101

Query: 145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG-SLPLEVGSLSNTQELDFS 203
            LTSL+ L      L      P G   TL  ++ AHN  +   LP    +L+N   +D S
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 204 EHMLSDEIPITLGN----RSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTI 259
            + +       L            L +  N         F   K   +L L  N  S  I
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNI 220

Query: 260 PKE-LETLPFLENLNLSFNNFEG 281
            K  L+ L  L    L    F+ 
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAG--DIPAGI 83
            I        KL  L+L  N     I  +     NL+  L +      +F    ++    
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKT--CLQNLA-GLHVHRLILGEFKDERNLEIFE 251

Query: 84  PKYF------NLIQLGLDRNCLAGSIPFSIGKLQNLQKLN----------PLATSLYSFQ 127
           P          + +  L               L N+  ++           +        
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFN--G 185
           L++    L         +L  L+ L L+ N    SI        +LS +D + N  +  G
Sbjct: 312 LSIIRCQLKQF---PTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSG 366

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP-FFGSFKG 244
                    ++ + LD S +     +        + +HL    +  +       F S + 
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 245 TIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTS 293
            + L++S+ N           L  L  L ++ N+F+    S +VF NT+
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-NVFANTT 473

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 6e-20
 Identities = 43/184 (23%), Positives = 63/184 (34%), Gaps = 18/184 (9%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIP-SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
           +      L  LQ+L+F +ST++     S      KL YL +   N           F  L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD---GIFLGL 447

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
            T L  L   GN F  +  + +     NL  L L +  L          L  LQ LN   
Sbjct: 448 -TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN--- 503

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
                    ++ NNL          L SL  L+ S N +  S         +L+  +  +
Sbjct: 504 ---------MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

Query: 181 NNFN 184
           N+  
Sbjct: 555 NSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 5/155 (3%)

Query: 137 GNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSN 196
           G++   +E + ++         L   +P    + S+  +ID + N           + S 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVP--DDIPSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 197 TQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLS 256
            Q LD S   +               +L+L GN  Q   P  F       +L      L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 257 GTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
                 +  L  L+ LN++ N         + F+N
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSN 151

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (265), Expect = 2e-25
 Identities = 51/295 (17%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 7   IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
             N  R +     +S+++  + S       +  L L  N L  I            TKL 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA---ADLAPF-TKLE 61

Query: 67  ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF 126
           +L+   N    +    +     L  L L+ N +       +    +++            
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIET----------- 103

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG- 185
            L+ A NN++  +          + + L+ N +        G  S +  +D   N  +  
Sbjct: 104 -LHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT 245
           +      S    + L+   + +  ++   +   +K + L L  N     + P F S  G 
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
             ++L +N L   I K L     LE+ +L  N F           N  V ++   
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 28/286 (9%)

Query: 56  DSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK 115
           +   N + + +I     +     + +     +N+ +L L  N L+      +     L+ 
Sbjct: 4   EIKQNGN-RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 116 L----NPLATSLYSFQ-------LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIP 164
           L    N L       +       L+L  N +       L    S++ L+ + N++   + 
Sbjct: 63  LNLSSNVL-YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRV- 114

Query: 165 KPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD-EIPITLGNRSKFEH 223
                     +I  A+N       L+ G  S  Q LD   + +          +    EH
Sbjct: 115 -SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 224 LLLGGNMFQGRIPPFFGSFKGTI-DLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQ 282
           L L  N     +          +  L+LS N L+  +  E ++   +  ++L  N     
Sbjct: 174 LNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 283 LPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCAIES-SKKQIHHL 327
             ++    N     + GNG  CG + +    +  +++ +K+ +  L
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 32/215 (14%), Positives = 55/215 (25%), Gaps = 45/215 (20%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
             + G   R+Q                        YL L  N +  +   +       S 
Sbjct: 137 DLDEGCRSRVQ------------------------YLDLKLNEIDTV---NFAELAASSD 169

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
            L  L+   N    D+   +     L  L L  N LA  +         +          
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTW-------- 218

Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNF 183
               ++L  N L   I ++L    +L+  +L  N            FS    +       
Sbjct: 219 ----ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF--HCGTLRDFFSKNQRVQTVAKQT 271

Query: 184 NGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNR 218
              L  +         L        +++P    +R
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 33/180 (18%), Positives = 52/180 (28%), Gaps = 23/180 (12%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
           N  +   +   L++LN   + +  ++   +     L  L L SN L   + P   S    
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAG- 215

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
              +  +    N+    I   +    NL    L  N       F  G L++    N    
Sbjct: 216 ---VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN------GFHCGTLRDFFSKNQRVQ 265

Query: 122 SLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL-FSTLSSIDFAH 180
           ++    +      LTG   E     T        C  L    P P       L      H
Sbjct: 266 TVAKQTV----KKLTGQNEEECTVPTLGHYGAYCCEDL----PAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT 245
           ++     + +  +    ++  L   +     +    + L L GN            F   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE 280
             LNLS N L      +LE+L  L  L+L+ N  +
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ 93

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 3e-25
 Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 34/296 (11%)

Query: 5   QEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTK 64
             + NL +L NL  G +  +    S L   + L  L L  +N+  I P       NL TK
Sbjct: 82  SPLSNLVKLTNLYIGTN--KITDISALQNLTNLRELYLNEDNISDISP-----LANL-TK 133

Query: 65  LRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLY 124
           +  L+ G N    D+   +     L  L +  + +    P     L +L           
Sbjct: 134 MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPI--ANLTDLY---------- 180

Query: 125 SFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFN 184
              L+L  N +       L +LTSL       N +   I   + + + L+S+   +N   
Sbjct: 181 --SLSLNYNQIED--ISPLASLTSLHYFTAYVNQIT-DITPVANM-TRLNSLKIGNNKIT 234

Query: 185 GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG 244
              PL   +LS    L+   + +SD     + + +K + L +G N           +   
Sbjct: 235 DLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQ 288

Query: 245 TIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
              L L++N L     + +  L  L  L LS N+    +  ++  +          
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.8 bits (242), Expect = 5e-22
 Identities = 56/299 (18%), Positives = 106/299 (35%), Gaps = 36/299 (12%)

Query: 13  LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGG 72
              L    + +    P   +  ++     L   ++  ++         L   +  L   G
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT-----QEEL-ESITKLVVAG 53

Query: 73  NQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPLATSLYSF-- 126
            + A  I  GI    NL  L L+ N +    P S   L  L  L    N + T + +   
Sbjct: 54  EKVA-SIQ-GIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKI-TDISALQN 108

Query: 127 -----QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
                +L L E+N++      L NLT +  LNL  NH    +   S + + L+ +    +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNM-TGLNYLTVTES 165

Query: 182 NFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS 241
                 P+   +L++   L  + + + D  P  L + +   +     N     I P   +
Sbjct: 166 KVKDVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITP-VAN 219

Query: 242 FKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
                 L + +N ++   P  L  L  L  L +  N     + ++   T   ++++  N
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.4 bits (233), Expect = 7e-21
 Identities = 63/294 (21%), Positives = 102/294 (34%), Gaps = 35/294 (11%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
                 L  +  L      V   I   +   + L YL+L  N +  I P      +NL  
Sbjct: 37  VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISP-----LSNL-V 88

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPL 119
           KL  L  G N+   DI A +    NL +L L+ + ++   P     L  +  L    N  
Sbjct: 89  KLTNLYIGTNKIT-DISA-LQNLTNLRELYLNEDNISDISPL--ANLTKMYSLNLGANHN 144

Query: 120 ATSLYSF-------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST 172
            + L           L + E+ +    P  + NLT L  L+L+ N +      P    ++
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS--PLASLTS 200

Query: 173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ 232
           L       N      P+   +++    L    + ++D  P  L N S+   L +G N   
Sbjct: 201 LHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256

Query: 233 GRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSM 286
                          LN+  N +S      L  L  L +L L+ N    +   +
Sbjct: 257 D--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 85.7 bits (213), Expect = 2e-18
 Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 28/212 (13%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
               + N+  L  L    S V+   P  ++  + L  LSL  N +  I P       +L 
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-----LASL- 198

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NP 118
           T L    A  NQ     P  +     L  L +  N +    P     L  L  L    N 
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQ 254

Query: 119 LATSLYSFQ-------LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS 171
           + + + + +       LN+  N ++      L NL+ L  L L+ N LG    +  G  +
Sbjct: 255 I-SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFS 203
            L+++  + N+     PL   SLS     DF+
Sbjct: 312 NLTTLFLSQNHITDIRPL--ASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.0 bits (180), Expect = 4e-14
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 26/188 (13%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
            I NL  L +L+   + ++   P  L+  + L Y + + N +  I P       N+ T+L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-----VANM-TRL 223

Query: 66  RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPLAT 121
             L  G N+   D+   +     L  L +  N ++  I  ++  L  L+ L    N + +
Sbjct: 224 NSLKIGNNKIT-DLS-PLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQI-S 278

Query: 122 SLYSFQ-------LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLS 174
            +           L L  N L     E +  LT+L  L LS NH+    P  + L S + 
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL-ASL-SKMD 336

Query: 175 SIDFAHNN 182
           S DFA+  
Sbjct: 337 SADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 36/171 (21%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIP------------- 52
            + +L  L       + +    P  ++  ++L  L + +N +  + P             
Sbjct: 194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG 251

Query: 53  ----PSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIG 108
                 +++  +L TKL++L+ G NQ + DI   +     L  L L+ N L       IG
Sbjct: 252 TNQISDINAVKDL-TKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 109 KLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
            L NL  L             L++N++T   P  L +L+ +   + +   +
Sbjct: 309 GLTNLTTLF------------LSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
              + NL +L +L   N+ +  E    +   + LT L L  N++  I P       +L +
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASL-S 333

Query: 64  KLRILDAGGNQ 74
           K+   D     
Sbjct: 334 KMDSADFANQV 344

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (268), Expect = 7e-25
 Identities = 65/348 (18%), Positives = 116/348 (33%), Gaps = 37/348 (10%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS- 62
           P+ + N F  + L   ++    E+P         T      +      PP       ++ 
Sbjct: 5   PRNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 63  --------TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ 114
                    +   L+         +P   P   +L  L    N L   +P     L++L 
Sbjct: 63  SRLRDCLDRQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 115 KLNPLATSLYSF-----QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL 169
             N    +L         L ++ N L   +PE L+N + L+I+++  N L   +P    L
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSL-KKLPD---L 171

Query: 170 FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGN 229
             +L  I   +N     LP E+ +L     +    + L  ++P    +    E ++ G N
Sbjct: 172 PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNN 225

Query: 230 MFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVF 289
           +      P   +      +   +N L  T+P    +L  L   +    +      S++  
Sbjct: 226 IL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFL 282

Query: 290 TNTSVISIVGNGKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSL 337
            + S     G  +L   +  L   S  I S       L     S N L
Sbjct: 283 -DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.2 bits (240), Expect = 3e-21
 Identities = 65/291 (22%), Positives = 104/291 (35%), Gaps = 50/291 (17%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           +P+   +L  L   N     +    P        L YL + +N L       L    N  
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQL-----EKLPELQNS- 152

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NP 118
           + L+I+D   N     +P   P   +L  +    N L   +P  +  L  L  +    N 
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNS 206

Query: 119 LAT---SLYSFQ-LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLS 174
           L        S + +    N L       L+NL  L  +    N L  ++P    L  +L 
Sbjct: 207 LKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLL-KTLPD---LPPSLE 260

Query: 175 SIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGR 234
           +++   N     LP    SL     LD SE++ S  +     N     +L    N  +  
Sbjct: 261 ALNVRDNYLT-DLPELPQSL---TFLDVSENIFS-GLSELPPN---LYYLNASSNEIR-S 311

Query: 235 IPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS 285
           +     S +   +LN+S+N L   +P        LE L  SFN+   ++P 
Sbjct: 312 LCDLPPSLE---ELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 354

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 91.6 bits (228), Expect = 8e-20
 Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 37/275 (13%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
           E+ NL  L  +   N++++ ++P        L  +   +N L       L    NL   L
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE-----ELPELQNL-PFL 239

Query: 66  RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYS 125
             + A  N     +P   P   +L  L +  N L   +P     L  L     + + L  
Sbjct: 240 TTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE 294

Query: 126 FQLNLAENNLTGN-IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFN 184
              NL   N + N I    +   SL+ LN+S N L   +P    L   L  +  + N+  
Sbjct: 295 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA 350

Query: 185 GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG 244
             +P    +L   ++L    + L  E P    +    E L +  ++    +P    + K 
Sbjct: 351 -EVPELPQNL---KQLHVEYNPLR-EFPDIPES---VEDLRMNSHL--AEVPELPQNLK- 399

Query: 245 TIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNF 279
              L++  N L    P   E+   +E+L ++    
Sbjct: 400 --QLHVETNPLR-EFPDIPES---VEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.3 bits (222), Expect = 4e-19
 Identities = 62/306 (20%), Positives = 110/306 (35%), Gaps = 66/306 (21%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
           E+ N   L+ ++  N++++ ++P        L +++  +N L       L    NL   L
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-----ELPELQNL-PFL 197

Query: 66  RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN-------- 117
             + A  N     +P       +L  +    N L       +  L  L  +         
Sbjct: 198 TAIYADNNSLK-KLPDLP---LSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT 251

Query: 118 --PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS 175
              L  SL +  LN+ +N LT ++PE  ++LT L +     + L       S L   L  
Sbjct: 252 LPDLPPSLEA--LNVRDNYLT-DLPELPQSLTFLDVSENIFSGL-------SELPPNLYY 301

Query: 176 IDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI 235
           ++ + N    SL     SL   +EL+ S + L  E+P         E L+   N     +
Sbjct: 302 LNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EV 352

Query: 236 PPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF----------------LENLNLSFNNF 279
           P    + K    L++ +N L    P   E++                  L+ L++  N  
Sbjct: 353 PELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 280 EGQLPS 285
             + P 
Sbjct: 409 R-EFPD 413

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 32/211 (15%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
           ++P+   +L  L       S +    P+       L YL+  SN +         S  +L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR--------SLCDL 315

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ----KLN 117
              L  L+   N+   ++PA  P    L +L    N LA  +P     L+ L      L 
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLKQLHVEYNPLR 370

Query: 118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID 177
                  S + +L  N+    +PE  +NL  L   ++  N L    P    +  ++  + 
Sbjct: 371 EFPDIPESVE-DLRMNSHLAEVPELPQNLKQL---HVETNPLR-EFPD---IPESVEDLR 422

Query: 178 FAHNNFNGSLPLEVGSLSNTQELDFSEHMLS 208
                          +    ++  F  H   
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (262), Expect = 4e-24
 Identities = 60/344 (17%), Positives = 109/344 (31%), Gaps = 39/344 (11%)

Query: 7   IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
             N  R +     +S+++  + S       +  L L  N L  I            TKL 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA---ADLAPF-TKLE 61

Query: 67  ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF 126
           +L+   N    +    +     L  L L+ N +       +    +++ L+         
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLH--------- 105

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG- 185
               A NN++  +  S       + + L+ N +        G  S +  +D   N  +  
Sbjct: 106 ---AANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT 245
           +      S    + L+   + +  ++   +   +K + L L  N     + P F S  G 
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCG 305
             ++L +N L   I K L     LE+ +L  N F           N  V ++        
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT---- 271

Query: 306 GVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLS 349
               ++ L+   E             Y    L     D LI L 
Sbjct: 272 ----VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.0 bits (218), Expect = 1e-18
 Identities = 46/272 (16%), Positives = 94/272 (34%), Gaps = 17/272 (6%)

Query: 56  DSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK 115
           +   N + + +I     +     + +     +N+ +L L  N L+      +     L+ 
Sbjct: 4   EIKQNGN-RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 116 L----NPLATSLYSFQL--NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL 169
           L    N L       +    L   +L  N  + L    S++ L+ + N++   +      
Sbjct: 63  LNLSSNVL-YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI-SRV--SCSR 118

Query: 170 FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD-EIPITLGNRSKFEHLLLGG 228
                +I  A+N       L+ G  S  Q LD   + +          +    EHL L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 229 NMFQGRIPPFFGSFKGTI-DLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS 287
           N     +          +  L+LS N L+  +  E ++   +  ++L  N       ++ 
Sbjct: 179 NFIY-DVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 288 VFTNTSVISIVGNGKLCGGVPELRLLSCAIES 319
              N     + GNG  CG + +    +  +++
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.1 bits (213), Expect = 7e-18
 Identities = 40/277 (14%), Positives = 74/277 (26%), Gaps = 26/277 (9%)

Query: 13  LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGG 72
            +N+   N+ +           S++ YL L  N +  +           S  L  L+   
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE---LAASSDTLEHLNLQY 178

Query: 73  NQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAE 132
           N    D+   +     L  L L  N LA  +         +  ++            L  
Sbjct: 179 NFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWIS------------LRN 223

Query: 133 NNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVG 192
           N L   I ++L    +L+  +L  N            FS    +          L  +  
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGF--HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 193 SLSNTQELDFSEHMLSDEIPITLGNR-----SKFEHLLLGGNMFQGRIPPFFGSFKGTID 247
                  L        +++P    +R      K   LL G      R+     +     +
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 248 LNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP 284
           ++         I +          L       + Q+ 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 32/280 (11%), Positives = 67/280 (23%), Gaps = 38/280 (13%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
            +  E  +   +  ++  N+ +   I   L  +  L +  L  N  H             
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-----F 258

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
           S   R+                 +            C              L  L     
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE---DLPAPFADRLIALKRKEH 315

Query: 122 SLYSFQ-------------------LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
           +L S Q                   ++  +      I +      +   L      L   
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL--- 372

Query: 163 IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFE 222
             + S      + +D       G + L+  +      L     ++     + +  +S   
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

Query: 223 HLLLGGNMFQGRIPPFF------GSFKGTIDLNLSHNNLS 256
           + +   +M+Q +               G  DL L+  N +
Sbjct: 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT 245
           ++     + +  +    ++  L   +     +    + L L GN            F   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE 280
             LNLS N L  T+   LE+L  L  L+L+ N  +
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (257), Expect = 4e-23
 Identities = 61/297 (20%), Positives = 101/297 (34%), Gaps = 46/297 (15%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
            +P  +     +  L   ++ +   +P+      +L  L +  N L   +P        L
Sbjct: 54  TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLEL 106

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ----KLN 117
                I                     L +L +  N L  S+P     LQ L     +L 
Sbjct: 107 ----SIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLA 154

Query: 118 PLATSLYSFQ-LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
            L         L    N LT ++P     L  L   ++S N L  S+P    L S L  +
Sbjct: 155 SLPALPSELCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLPT---LPSELYKL 206

Query: 177 DFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP 236
              +N    SLP     L   +EL  S + L+  +P+        + L++ GN     +P
Sbjct: 207 WAYNNRLT-SLPALPSGL---KELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLP 257

Query: 237 PFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTS 293
                      L++  N L+  +P+ L  L     +NL  N    +    ++   TS
Sbjct: 258 MLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITS 309

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.6 bits (235), Expect = 2e-20
 Identities = 46/225 (20%), Positives = 78/225 (34%), Gaps = 40/225 (17%)

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA 120
           L+    +L+ G +     +P  +P   ++  L +  N L  S+P    +L+ L       
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL------- 86

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
                    ++ N LT ++P     L  L I +    HL         L S L  +    
Sbjct: 87  --------EVSGNQLT-SLPVLPPGLLELSIFSNPLTHL-------PALPSGLCKLWIFG 130

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
           N    SLP+    L   QEL  S++ L+  +P           L    N     +P    
Sbjct: 131 NQLT-SLPVLPPGL---QELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPS 181

Query: 241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS 285
             +   +L++S N L+ ++P     L  L   N    +       
Sbjct: 182 GLQ---ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG 222

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.4 bits (180), Expect = 9e-14
 Identities = 51/240 (21%), Positives = 84/240 (35%), Gaps = 45/240 (18%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
           ++P     L   Q L+  ++ +   +P+  S   +L  L  ++N L  + P        L
Sbjct: 135 SLPVLPPGL---QELSVSDNQLA-SLPALPS---ELCKLWAYNNQLTSL-PMLPSGLQEL 186

Query: 62  S-------------TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIG 108
           S             ++L  L A  N+    +PA       L +L +  N L  S+P    
Sbjct: 187 SVSDNQLASLPTLPSELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRL-TSLPVLPS 241

Query: 109 KLQNL-------QKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGG 161
           +L+ L         L  L + L S  L++  N LT  +PESL +L+S   +NL  N L  
Sbjct: 242 ELKELMVSGNRLTSLPMLPSGLLS--LSVYRNQLT-RLPESLIHLSSETTVNLEGNPL-- 296

Query: 162 SIPKPSGLFSTLSSIDFAHNNFN------GSLPLEVGSLSNTQELDFSEHMLSDEIPITL 215
              +       ++S                S P E  +L              +  P   
Sbjct: 297 -SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (254), Expect = 9e-23
 Identities = 66/313 (21%), Positives = 104/313 (33%), Gaps = 35/313 (11%)

Query: 4   PQEIGNLFRLQNLNF-GNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
              IG+L  L+ LN   N     ++P + S  + L +L L SN +  I    L     + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
                LD   N     I  G  K   L +L L  N  + ++      +Q L  L      
Sbjct: 177 LLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVM--KTCIQGLAGLEVHRLV 233

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS---TLSSIDFA 179
           L  F+      NL      +LE L +L I      +L   +     LF+    +SS    
Sbjct: 234 LGEFRNE---GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 180 HNNFNGSLPLEV-------------------GSLSNTQELDFSEHMLSDEIPITLGNRSK 220
                                            L + + L F+ +   +    +  +   
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPS 348

Query: 221 FEHLLLGGNM--FQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNN 278
            E L L  N   F+G              L+LS N +  T+      L  LE+L+   +N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 279 FEGQLPSMSVFTN 291
            + Q+   SVF +
Sbjct: 408 LK-QMSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 59/282 (20%), Positives = 97/282 (34%), Gaps = 28/282 (9%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
           +  + + NL   +           +I    +  + ++  SL S  +  +      S+   
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFG 305

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
              L +++    QF            +L +L    N    +       L +L+ L+    
Sbjct: 306 WQHLELVNCKFGQFPTLKLK------SLKRLTFTSNKGGNAFSEV--DLPSLEFLD---- 353

Query: 122 SLYSFQLNLAENNLT--GNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA 179
                   L+ N L+  G   +S    TSL+ L+LS N +  ++         L  +DF 
Sbjct: 354 --------LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 180 HNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP- 237
           H+N        V  SL N   LD S               S  E L + GN FQ    P 
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 238 FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNF 279
            F   +    L+LS   L    P    +L  L+ LN++ N  
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.4 bits (222), Expect = 8e-19
 Identities = 49/292 (16%), Positives = 88/292 (30%), Gaps = 33/292 (11%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
                +   LQ L+     +Q          S L+ L L  N +  +      +F+ L +
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL---GAFSGL-S 100

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLA-GSIPFSIGKLQNLQKLNPLATS 122
            L+ L A     A      I     L +L +  N +    +P     L NL+        
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH------- 153

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQI----LNLSCNHLGGSIPKPSGLFSTLSSIDF 178
                L+L+ N +       L  L  + +    L+LS N +   I   +     L  +  
Sbjct: 154 -----LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTL 207

Query: 179 AHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHL---------LLGG 228
            +N  + ++       L+  +          +E  +   ++S  E L         L   
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELET-LPFLENLNLSFNNF 279
           + +   I   F         +L    +              LE +N  F  F
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 51/264 (19%), Positives = 82/264 (31%), Gaps = 32/264 (12%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
           +IP +L  +     L L  N L  +   S  SF      L++LD    +           
Sbjct: 21  KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQS 74

Query: 86  YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN 145
             +L  L L  N +      +   L +LQK            L   E NL       + +
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQK------------LVAVETNLASLENFPIGH 122

Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEVGSLSNTQ---- 198
           L +L+ LN++ N +  S   P   FS L++   +D + N        ++  L        
Sbjct: 123 LKTLKELNVAHNLI-QSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 199 ELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP-FFGSFKGTIDLNLSHNNLSG 257
            LD S + ++  I        +   L L  N     +         G     L       
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 258 T---IPKELETLPFLENLNLSFNN 278
                  +   L  L NL +    
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFR 263

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 6e-17
 Identities = 49/293 (16%), Positives = 79/293 (26%), Gaps = 31/293 (10%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
                +L  L  L    + +Q       S  S L  L     NL  +         +L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHL-K 124

Query: 64  KLRILDAGGNQFA-GDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
            L+ L+   N      +P       NL  L L  N +       +  L  +  LN     
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN----- 179

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDF---- 178
                L+L+ N +   I         L  L L  N    ++ K       L+ ++     
Sbjct: 180 ---LSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRLV 233

Query: 179 --AHNNFNGSLPLEVGSLSNTQELDFSE------HMLSDEIPITLGNRSKFEHLLLGGNM 230
                N       +  +L     L   E          D+I       +      L    
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 231 FQGRIPPFFGSFKGTI--DLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
            + R+  F  +F       +N           K L+ L F  N   +  +   
Sbjct: 294 IE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 8e-17
 Identities = 53/232 (22%), Positives = 74/232 (31%), Gaps = 23/232 (9%)

Query: 59  TNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP 118
            NL    + LD   N            +  L  L L R  +      +   L +L  L  
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI- 82

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDF 178
                      L  N +      +   L+SLQ L     +L      P G   TL  ++ 
Sbjct: 83  -----------LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 179 AHNNFN-GSLPLEVGSLSNTQELDFSE---HMLSDEIPITLGN-RSKFEHLLLGGNMFQG 233
           AHN      LP    +L+N + LD S      +       L         L L  N    
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN- 190

Query: 234 RIPPFFGSFKGT--IDLNLSHNNLSGTIPKE-LETLPFLENLNLSFNNFEGQ 282
            I P  G+FK      L L +N  S  + K  ++ L  LE   L    F  +
Sbjct: 191 FIQP--GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 57/306 (18%), Positives = 94/306 (30%), Gaps = 42/306 (13%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPT-SKLTYLSLF------SNNLHGIIPPSL 55
           +        RL  L   N+     +        + L    L         NL      +L
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 56  DSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQ 114
           +   NL+       A  + +  DI        N+    L    +     FS     Q+L+
Sbjct: 252 EGLCNLTI-EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 115 KLNPLATSLYSFQL-NLAENNLTGNIPESL---ENLTSLQILNLSCNHLGGSIPKPSGLF 170
            +N       + +L +L     T N   +     +L SL+ L+LS N L       S   
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS-FKGCCSQSD 369

Query: 171 STLSS---IDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLG 227
              +S   +D + N    ++      L   + LDF    L       +   S F  L   
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-----QMSEFSVFLSL--- 420

Query: 228 GNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS 287
                          +  I L++SH +           L  LE L ++ N+F+       
Sbjct: 421 ---------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-D 464

Query: 288 VFTNTS 293
           +FT   
Sbjct: 465 IFTELR 470

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 4e-15
 Identities = 45/272 (16%), Positives = 80/272 (29%), Gaps = 65/272 (23%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
            L  L+ L F  ++ +G           L +L L  N L      S  S     T L+ L
Sbjct: 323 KLKSLKRLTF--TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS-QSDFGT-TSLKYL 378

Query: 69  DAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQL 128
           D   N     + +       L  L    + L     FS+    +L+ L           L
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLI---------YL 426

Query: 129 NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP 188
           +++  +           L+SL++L ++ N    +      +F+ L ++            
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF--LPDIFTELRNL------------ 472

Query: 189 LEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP-FFGSFKGTID 247
                                              L L     + ++ P  F S      
Sbjct: 473 ---------------------------------TFLDLSQCQLE-QLSPTAFNSLSSLQV 498

Query: 248 LNLSHNNLSGTIPKELETLPFLENLNLSFNNF 279
           LN++ N L        + L  L+ + L  N +
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 38/160 (23%), Positives = 57/160 (35%), Gaps = 18/160 (11%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIP-SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
            +      L +L++L+F +S ++     S       L YL +   +           F  
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNG 443

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
           L + L +L   GN F  +    I     NL  L L +  L    P +   L +LQ     
Sbjct: 444 L-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV---- 498

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
                   LN+A N L        + LTSLQ + L  N  
Sbjct: 499 --------LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 1/126 (0%)

Query: 166 PSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLL 225
           P  L  +  ++D + N           S    Q LD S   +         + S    L+
Sbjct: 23  PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS 285
           L GN  Q      F        L     NL+      +  L  L+ LN++ N  +     
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKL 141

Query: 286 MSVFTN 291
              F+N
Sbjct: 142 PEYFSN 147

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 98.0 bits (245), Expect = 2e-22
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 33/140 (23%)

Query: 398 LAFEFMPNGSLESWLH-PNEATRRLDLAEGLKIAV--------------------DI-PS 435
           L + +M NGS+ S L    E+   LD  +  +IA+                    D+  +
Sbjct: 104 LVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAA 163

Query: 436 NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--EWVARYQHKGKG 493
           N+LLD +  A VGDFGLA+ +    T+       + AV G+IG+ +  E+++  +   K 
Sbjct: 164 NILLDEEFEAVVGDFGLAKLMDYKDTHV------TTAVRGTIGH-IAPEYLSTGKSSEKT 216

Query: 494 --YSCGILLLEIMTGKRPTD 511
             +  G++LLE++TG+R  D
Sbjct: 217 DVFGYGVMLLELITGQRAFD 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.2 bits (245), Expect = 3e-22
 Identities = 60/300 (20%), Positives = 111/300 (37%), Gaps = 23/300 (7%)

Query: 8   GNLFRLQNLNFGNSTVQGEIPSH-LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
            +  +++ LN  +  ++ EI ++  +    +  L +  N +   +PP +  F N+   L 
Sbjct: 66  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV--FQNV-PLLT 120

Query: 67  ILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSI-GKLQNLQKL----NPLA 120
           +L    N  +  +P GI      L  L +  N L   I         +LQ L    N L 
Sbjct: 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
               S   +L   N++ N+  +L    +++ L+ S N +   +     +   L+ +   H
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQH 235

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
           NN        +       E+D S + L   +        + E L +  N     +  +  
Sbjct: 236 NNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
                  L+LSHN+L   + +       LENL L  N+    L   S       +++  N
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL-STHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 62/321 (19%), Positives = 110/321 (34%), Gaps = 36/321 (11%)

Query: 8   GNLFRLQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTK 64
                +Q L  G      +   +  ++     LT L L  N+L   +P  +  F N   K
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLTVLVLERNDLS-SLPRGI--FHNT-PK 142

Query: 65  LRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
           L  L    N     I     +   +L  L L  N L   +  S+  + +L   N     L
Sbjct: 143 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLL 198

Query: 124 YSF-------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
            +        +L+ + N++   +   +     L IL L  N+L             L  +
Sbjct: 199 STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAWLLNY-PGLVEV 253

Query: 177 DFAHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI 235
           D ++N     +       +   + L  S + L   + +        + L L  N     +
Sbjct: 254 DLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 310

Query: 236 PPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVI 295
                 F    +L L HN++  T+   L T   L+NL LS N+++      ++F N +  
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC-NSLRALFRNVARP 366

Query: 296 SIVGNGKLCG-GVPELRLLSC 315
           ++    + C         L C
Sbjct: 367 AVDDADQHCKIDYQLEHGLCC 387

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 58/275 (21%), Positives = 105/275 (38%), Gaps = 35/275 (12%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
            L   + + F NST++    + L    ++  L+L    +  I      +F      ++ L
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT---YAFAYA-HTIQKL 98

Query: 69  DAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSF 126
             G N     +P  + +    L  L L+RN L+ S+P  I      L             
Sbjct: 99  YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT------------ 144

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS 186
            L+++ NNL     ++ +  TSLQ L LS N L   +     L  +L   + ++N  +  
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-- 199

Query: 187 LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI 246
               +      +ELD S + ++    +      +   L L  N        +  ++ G +
Sbjct: 200 ---TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLV 251

Query: 247 DLNLSHNNLSGTIPKE-LETLPFLENLNLSFNNFE 280
           +++LS+N L   I       +  LE L +S N   
Sbjct: 252 EVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 37/209 (17%), Positives = 69/209 (33%), Gaps = 29/209 (13%)

Query: 79  IPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGN 138
           I + +        + +D         F    L N + +                + +   
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVT------------FKNSTMRKL 60

Query: 139 IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEV-GSL 194
               L++   +++LNL+   +   I   +  F+   +   +    N     LP  V  ++
Sbjct: 61  PAALLDSFRQVELLNLNDLQI-EEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 116

Query: 195 SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL---NLS 251
                L    + LS        N  K   L +  N  + RI     +F+ T  L    LS
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED--DTFQATTSLQNLQLS 173

Query: 252 HNNLSGTIPKELETLPFLENLNLSFNNFE 280
            N L+  +   L  +P L + N+S+N   
Sbjct: 174 SNRLT-HVD--LSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 8/123 (6%)

Query: 162 SIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKF 221
            I            +       +     E  +L+N + + F    +       L +  + 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 222 EHLLLGGNMFQGRIPPFFGSFKGTIDL---NLSHNNLSGTIPKE-LETLPFLENLNLSFN 277
           E L L     +  I     +F     +    +  N +   +P    + +P L  L L  N
Sbjct: 72  ELLNLNDLQIE-EIDT--YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 278 NFE 280
           +  
Sbjct: 128 DLS 130

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.7 bits (244), Expect = 8e-22
 Identities = 75/291 (25%), Positives = 117/291 (40%), Gaps = 35/291 (12%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
              +  L  L  +NF N+ +    P  L   +KL  + + +N +  I P       NL T
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-----LANL-T 112

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN------ 117
            L  L    NQ   DI   +    NL +L L  N ++      +  L +LQ+L+      
Sbjct: 113 NLTGLTLFNNQIT-DIDP-LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVT 168

Query: 118 ---PLATSLYSFQ-LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTL 173
              PLA +L + + L+++ N ++      L  LT+L+ L  + N +      P G+ + L
Sbjct: 169 DLKPLA-NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT--PLGILTNL 223

Query: 174 SSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG 233
             +    N       L   SL+N  +LD + + +S+  P  L   +K   L LG N    
Sbjct: 224 DELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 234 RIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP 284
            I P         +L L+ N L    P  +  L  L  L L FNN     P
Sbjct: 280 -ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 96.2 bits (240), Expect = 3e-21
 Identities = 72/302 (23%), Positives = 118/302 (39%), Gaps = 32/302 (10%)

Query: 7   IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
             +L ++  L         +    +   + LT ++  +N L  I P       NL TKL 
Sbjct: 42  QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNL-TKLV 93

Query: 67  ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPLATS 122
            +    NQ A   P  +    NL  L L  N +    P     L NL +L    N + + 
Sbjct: 94  DILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTI-SD 148

Query: 123 LYSFQ--LNLAENNLTGNI--PESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDF 178
           + +     +L + +    +   + L NLT+L+ L++S N +  S        + L S+  
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIA 206

Query: 179 AHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPF 238
            +N  +   PL  G L+N  EL  + + L D    TL + +    L L  N     + P 
Sbjct: 207 TNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAP- 260

Query: 239 FGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIV 298
                   +L L  N +S   P  L  L  L NL L+ N  E  +  +S   N + +++ 
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLY 317

Query: 299 GN 300
            N
Sbjct: 318 FN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 1e-20
 Identities = 60/281 (21%), Positives = 102/281 (36%), Gaps = 35/281 (12%)

Query: 5   QEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTK 64
             +G L  L  L+   + ++      L+  + LT L L +N +  + P      + L TK
Sbjct: 215 TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP-----LSGL-TK 266

Query: 65  LRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLY 124
           L  L  G NQ + +I   +     L  L L+ N L    P  I  L+NL  L        
Sbjct: 267 LTELKLGANQIS-NIS-PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT------- 315

Query: 125 SFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFN 184
                L  NN++   P  + +LT LQ L    N +  S        + ++ +   HN  +
Sbjct: 316 -----LYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQIS 366

Query: 185 GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG 244
              PL   +L+   +L  ++   ++       N S         N+    I P   S  G
Sbjct: 367 DLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVS---IPNTVKNVTGALIAPATISDGG 421

Query: 245 TI-DLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP 284
           +  + +++ N  S    +   T      +      F G + 
Sbjct: 422 SYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.0 bits (211), Expect = 1e-17
 Identities = 52/272 (19%), Positives = 96/272 (35%), Gaps = 36/272 (13%)

Query: 29  SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN 88
              +  ++     L   N+   +       T+L  ++  L A           G+    N
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS-----QTDL-DQVTTLQADRLGIK--SIDGVEYLNN 69

Query: 89  LIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTS 148
           L Q+    N L    P     L  L              + +  N +       L NLT+
Sbjct: 70  LTQINFSNNQLTDITPLK--NLTKLVD------------ILMNNNQIAD--ITPLANLTN 113

Query: 149 LQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS 208
           L  L L  N +  +   P    + L+ ++ + N  +    L    L++ Q+L F  + ++
Sbjct: 114 LTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFG-NQVT 168

Query: 209 DEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF 268
           D  P  L N +  E L +  N                  L  ++N +S   P  L  L  
Sbjct: 169 DLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 269 LENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
           L+ L+L+ N  +  + +++  TN + + +  N
Sbjct: 223 LDELSLNGNQLKD-IGTLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 12/164 (7%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSL 187
             + ++     I  +   L       L   ++  ++ +       ++++         S+
Sbjct: 6   ATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SI 61

Query: 188 PLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTID 247
              V  L+N  +++FS + L+D  P  L N +K   +L+  N      P    +      
Sbjct: 62  D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 248 LNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
           L L +N ++   P  L+ L  L  L LS N     + ++S  T+
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTS 157

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 94.2 bits (235), Expect = 2e-21
 Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 35/140 (25%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           L + +MPNGSL   L   + T  L      KIA                      +N+LL
Sbjct: 107 LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILL 166

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-RYQHKGKG----- 493
           D   TA + DFGLAR               ++ + G+  Y    +A      G+      
Sbjct: 167 DEAFTAKISDFGLARASEKF-----AQTVMTSRIVGTTAY----MAPEALR-GEITPKSD 216

Query: 494 -YSCGILLLEIMTGKRPTDE 512
            YS G++LLEI+TG    DE
Sbjct: 217 IYSFGVVLLEIITGLPAVDE 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.8 bits (236), Expect = 8e-21
 Identities = 59/284 (20%), Positives = 94/284 (33%), Gaps = 40/284 (14%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSH-LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
           +   L+ L    + V   +     +    L  L L SN L  +IP     FT LS  L  
Sbjct: 54  SFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPL--GVFTGLS-NLTK 108

Query: 68  LDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
           LD   N+    +   +   F    NL  L +  N L   I         L  L       
Sbjct: 109 LDISENKIV-ILLDYM---FQDLYNLKSLEVGDNDLV-YIS--HRAFSGLNSLE------ 155

Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAH 180
              QL L + NLT    E+L +L  L +L L   ++  +I      F  L     ++ +H
Sbjct: 156 ---QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIR--DYSFKRLYRLKVLEISH 209

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
             +  ++        N   L  +   L+    + + +      L L  N     I     
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG--S 266

Query: 241 SFKGTI---DLNLSHNNLSGTIPKE-LETLPFLENLNLSFNNFE 280
                +   ++ L    L+  +       L +L  LN+S N   
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 55/261 (21%), Positives = 94/261 (36%), Gaps = 30/261 (11%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI-P 84
            +P  +        L L  N +  +     D F +    L  L+   N  +  +  G   
Sbjct: 25  AVPEGIPTE--TRLLDLGKNRIKTLNQ---DEFASF-PHLEELELNENIVS-AVEPGAFN 77

Query: 85  KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE 144
             FNL  LGL  N L   IP  +     L  L          +L+++EN +   +    +
Sbjct: 78  NLFNLRTLGLRSNRLK-LIPLGV--FTGLSNLT---------KLDISENKIVILLDYMFQ 125

Query: 145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEV-GSLSNTQEL 200
           +L +L+ L +  N L   I      FS L+S   +     N   S+P E    L     L
Sbjct: 126 DLYNLKSLEVGDNDLV-YIS--HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVL 181

Query: 201 DFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIP 260
                 ++     +     + + L +    +   + P          L+++H NL+  +P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP 240

Query: 261 KE-LETLPFLENLNLSFNNFE 280
              +  L +L  LNLS+N   
Sbjct: 241 YLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.9 bits (213), Expect = 6e-18
 Identities = 64/283 (22%), Positives = 108/283 (38%), Gaps = 40/283 (14%)

Query: 9   NLFRLQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
           NLF L+ L   +     +   + + LS    LT L +  N +  ++      F +L   L
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLS---NLTKLDISENKIVILLD---YMFQDL-YNL 130

Query: 66  RILDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
           + L+ G N     I       F    +L QL L++  L  SIP     L +L  L     
Sbjct: 131 KSLEVGDNDLV-YISHRA---FSGLNSLEQLTLEKCNLT-SIPTEA--LSHLHGLI---- 179

Query: 122 SLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
                 L L   N+      S + L  L++L +S      ++         L+S+   H 
Sbjct: 180 -----VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 182 NFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
           N   ++P      L   + L+ S + +S      L    + + + L G      + P   
Sbjct: 235 NLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEP--Y 290

Query: 241 SFKGTI---DLNLSHNNLSGTIPKEL-ETLPFLENLNLSFNNF 279
           +F+G      LN+S N L+ T+ + +  ++  LE L L  N  
Sbjct: 291 AFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 2e-20
 Identities = 60/300 (20%), Positives = 112/300 (37%), Gaps = 23/300 (7%)

Query: 8   GNLFRLQNLNFGNSTVQGEIPSH-LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
            +  +++ LN  +  ++ EI ++  +    +  L +  N +   +PP +  F N+   L 
Sbjct: 72  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV--FQNV-PLLT 126

Query: 67  ILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSI-GKLQNLQKL----NPLA 120
           +L    N  +  +P GI      L  L +  N L   I         +LQ L    N L 
Sbjct: 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH 180
               S   +L   N++ N+  +L    +++ L+ S N +   +     +   L+ +   H
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVR--GPVNVELTILKLQH 241

Query: 181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
           NN        +       E+D S + L   +        + E L +  N     +  +  
Sbjct: 242 NNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
                  L+LSHN+L   + +       LENL L  N+    L  +S       +++  N
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 92.7 bits (230), Expect = 7e-20
 Identities = 65/326 (19%), Positives = 114/326 (34%), Gaps = 35/326 (10%)

Query: 8   GNLFRLQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTK 64
                +Q L  G      +   +  ++     LT L L  N+L   +P  +  F N   K
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLTVLVLERNDLS-SLPRGI--FHNT-PK 148

Query: 65  LRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
           L  L    N     I     +   +L  L L  N L   +  S+  + +L   N     L
Sbjct: 149 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLL 204

Query: 124 YSF-------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
            +        +L+ + N++   +   +     L IL L  N+L             L  +
Sbjct: 205 STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAWLLNY-PGLVEV 259

Query: 177 DFAHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI 235
           D ++N     +       +   + L  S + L   + +        + L L  N     +
Sbjct: 260 DLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 236 PPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVI 295
                 F    +L L HN++  T+   L T   L+NL LS N+++      ++F N +  
Sbjct: 317 ERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC-NSLRALFRNVARP 372

Query: 296 SIVGNGKLCGGVPELRLLSCAIESSK 321
           ++    + C    +L    C  ES K
Sbjct: 373 AVDDADQHCKIDYQLEHGLCCKESDK 398

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.6 bits (222), Expect = 6e-19
 Identities = 60/272 (22%), Positives = 107/272 (39%), Gaps = 33/272 (12%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
            L   + + F NST++    + L    ++  L+L    +  I      +F      ++ L
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT---YAFAYA-HTIQKL 104

Query: 69  DAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQ 127
             G N     +P  + +    L  L L+RN L+ S+P  I    N  KL           
Sbjct: 105 YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGI--FHNTPKLT---------T 151

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSL 187
           L+++ NNL     ++ +  TSLQ L LS N L   +     L  +L   + ++N  +   
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS--- 205

Query: 188 PLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTID 247
              +      +ELD S + ++    +      +   L L  N        +  ++ G ++
Sbjct: 206 --TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVE 258

Query: 248 LNLSHNNLSGTIPKE-LETLPFLENLNLSFNN 278
           ++LS+N L   I       +  LE L +S N 
Sbjct: 259 VDLSYNELE-KIMYHPFVKMQRLERLYISNNR 289

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.0 bits (184), Expect = 3e-14
 Identities = 50/314 (15%), Positives = 97/314 (30%), Gaps = 50/314 (15%)

Query: 9   NLFRLQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
           N+  L  L       S++   I  +     KLT LS+ +NNL  I     D+F    T L
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTP---KLTTLSMSNNNLERIED---DTFQAT-TSL 173

Query: 66  RILDAGGNQFAGDIPAG-----------------IPKYFNLIQLGLDRNCLAGSIPFSIG 108
           + L    N+    +                    +     + +L    N +   +   + 
Sbjct: 174 QNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV- 230

Query: 109 KLQNLQKL----NPLATSLYSFQ-------LNLAENNLTGNIPESLENLTSLQILNLSCN 157
               L  L    N L T             ++L+ N L   +      +  L+ L +S N
Sbjct: 231 -NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 158 HLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGN 217
            L  ++        TL  +D +HN+    +          + L    + +     + L  
Sbjct: 289 RL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT---LKLST 343

Query: 218 RSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFN 277
               ++L L  N +          F+      +   +    I  +LE     +  +  + 
Sbjct: 344 HHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYL 401

Query: 278 NFEGQLPSMSVFTN 291
           +   Q  +++    
Sbjct: 402 DRLLQYIALTSVVE 415

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 9/140 (6%)

Query: 146 LTSLQILNLSCNHLG-GSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSE 204
           +   Q  N+         I            +       +     E  +L+N + + F  
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 205 HMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL---NLSHNNLSGTIPK 261
             +       L +  + E L L     +  I     +F     +    +  N +   +P 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIE-EIDT--YAFAYAHTIQKLYMGFNAIR-YLPP 116

Query: 262 E-LETLPFLENLNLSFNNFE 280
              + +P L  L L  N+  
Sbjct: 117 HVFQNVPLLTVLVLERNDLS 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.1 bits (234), Expect = 4e-20
 Identities = 61/327 (18%), Positives = 102/327 (31%), Gaps = 37/327 (11%)

Query: 8   GNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
           GN + +      ++ +       L     +       +N+      +       S  +R 
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRH 270

Query: 68  LDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPL---- 119
           LD                  +L  L L  N +      +   L NLQ L    N L    
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 120 ATSLYSFQ----LNLAENNLTGNIPESLENLTSLQILNLSCNHL---------------G 160
           +++ Y       ++L +N++     ++ + L  LQ L+L  N L               G
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 161 GSIPKPSGLFSTLSSIDFAHNNFNGSLPLEV-GSLSNTQELDFSEHMLSD-EIPITLGNR 218
             +     +  T + I  + N       L     + + Q L  +++  S      T    
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 219 SKFEHLLLGGNMFQGRIPP-----FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLN 273
              E L LG NM Q           F        L L+HN L+   P     L  L  L+
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 274 LSFNNFEGQLPSMSVFTNTSVISIVGN 300
           L+ N     L    +  N  ++ I  N
Sbjct: 511 LNSNRLT-VLSHNDLPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 61/298 (20%), Positives = 99/298 (33%), Gaps = 42/298 (14%)

Query: 9   NLFRLQNLNFGNSTVQGEI-PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
            L +LQ L  G+      I          L  L L S+ ++ + P   D+F  L   L  
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP---DAFQGL-FHLFE 101

Query: 68  LDAGGNQFAGD-IPAGIPKYF-NLIQLGLDRNCLAG-SIPFSIGKLQNLQKLNPLATSLY 124
           L       +   +  G  +    L +L L +N +    +  S GKL +L+          
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS--------- 152

Query: 125 SFQLNLAENNLTGNIPESLENLT--SLQILNLSCNHLGGSIPKPSGLFS------TLSSI 176
              ++ + N +       LE L   +L   +L+ N L   +    G          L  +
Sbjct: 153 ---IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 177 DFAHNNFN------------GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGN--RSKFE 222
           D + N +              S    +    +     F  H + D    T     RS   
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 223 HLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE 280
           HL L            F + K    LNL++N ++    +    L  L+ LNLS+N   
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 2e-18
 Identities = 59/352 (16%), Positives = 114/352 (32%), Gaps = 25/352 (7%)

Query: 9   NLFRLQNLNFGNSTVQGEI--PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
            LF L  L      +   +    +      LT L L  N +  +      SF  L   L+
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKL-NSLK 151

Query: 67  ILDAGGNQFAGDIPAGIPKYF---NLIQLGLDRNCLAGSIPFSIGKLQN------LQKLN 117
            +D   NQ    +     +      L    L  N L   +    GK  N      L+ L+
Sbjct: 152 SIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP--SGLF-STLS 174
                          N ++ +   SL     +       +++     +   +GL  S++ 
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI-KDPDQNTFAGLARSSVR 269

Query: 175 SIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGR 234
            +D +H            +L + + L+ + + ++             + L L  N+    
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 235 IPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE--GQLPS-MSVFTN 291
               F        ++L  N+++    +  + L  L+ L+L  N       +PS   +F +
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389

Query: 292 TSVISIVGNGKLCGGVPEL---RLLSCAIESSKKQIHHLGTKIYSYNSLWGC 340
            + +  +    L   +  L   RL +  I     ++ HL   I + N    C
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.5 bits (209), Expect = 3e-17
 Identities = 61/291 (20%), Positives = 101/291 (34%), Gaps = 39/291 (13%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
            L  L+ LN   + +             L  L+L  N L  +      +F  L  K+  +
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS---SNFYGL-PKVAYI 343

Query: 69  DAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPLAT-- 121
           D   N  A  I     K+   L  L L  N L      +I  + ++  +    N L T  
Sbjct: 344 DLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLP 397

Query: 122 --SLYSFQLNLAENNLTG-NIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI-- 176
             +L +  ++L+EN L   +I   L  +  LQIL L+ N    S        S   S+  
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF--SSCSGDQTPSENPSLEQ 455

Query: 177 -DFAHNNFNGSLPLEV-----GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNM 230
                N    +   E+       LS+ Q L  + + L+   P    + +    L L  N 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 231 FQGRIPP--FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNF 279
               +       + +    L++S N L        +    L  L+++ N F
Sbjct: 516 LT-VLSHNDLPANLE---ILDISRNQLL-APNP--DVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 4e-16
 Identities = 48/261 (18%), Positives = 81/261 (31%), Gaps = 31/261 (11%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
           ++P  L+       L L  N +  +      SF  L  +L++L+ G       I     +
Sbjct: 18  QVPQVLN---TTERLLLSFNYIRTVTA---SSFPFL-EQLQLLELGSQYTPLTIDKEAFR 70

Query: 86  YF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNI--PES 142
              NL  L L  + +   +       Q L  L          +L L    L+  +     
Sbjct: 71  NLPNLRILDLGSSKIY-FLHPDA--FQGLFHLF---------ELRLYFCGLSDAVLKDGY 118

Query: 143 LENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEVGSLSNTQE 199
             NL +L  L+LS N +  S+      F  L+S   IDF+ N       +    L   Q 
Sbjct: 119 FRNLKALTRLDLSKNQI-RSLY-LHPSFGKLNSLKSIDFSSNQIFL---VCEHELEPLQG 173

Query: 200 LDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTI 259
              S   L+    +       +   +         I    G+           N +S + 
Sbjct: 174 KTLSFFSLAA-NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 260 PKELETLPFLENLNLSFNNFE 280
              L     +      F+N +
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK 253

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 7e-13
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNF 183
           +L L+ N +      S   L  LQ+L L   +   +I      F  L +   +D   +  
Sbjct: 28  RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI--DKEAFRNLPNLRILDLGSSKI 85

Query: 184 NGSLPLEV-GSLSNTQELDFSEHMLSDEI--PITLGNRSKFEHLLLGGNMFQG-RIPPFF 239
              L  +    L +  EL      LSD +       N      L L  N  +   + P F
Sbjct: 86  Y-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 240 GSFKGTIDLNLSHNNLSGTIPKELETL--PFLENLNLSFNNFEGQLP 284
           G       ++ S N +      ELE L    L   +L+ N+   ++ 
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 8e-10
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPS-GLFSTLSSIDFAHNNFNGS 186
                 NLT  +P+    L + + L LS N++  ++   S      L  ++        +
Sbjct: 9   AFYRFCNLT-QVPQ---VLNTTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 187 LPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP--FFGSFK 243
           +  E   +L N + LD     +    P           L L        +    +F + K
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 244 GTIDLNLSHNNLSG-TIPKELETLPFLENLNLSFNNFE 280
               L+LS N +    +      L  L++++ S N   
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 47/260 (18%), Positives = 83/260 (31%), Gaps = 26/260 (10%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTN 60
            N    I  +  + ++    +     + +          + L  N L  +    L     
Sbjct: 371 DNALTTIHFIPSIPDIFLSGNK----LVTLPKINLTANLIHLSENRLENL--DILYFLLR 424

Query: 61  LSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSI--GKLQNLQKLN 117
           +   L+IL    N+F+       P    +L QL L  N L  +    +     + L  L 
Sbjct: 425 V-PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID 177
                     L L  N L    P    +LT+L+ L+L+ N L   +   + L + L  +D
Sbjct: 484 ---------VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-TVLS-HNDLPANLEILD 532

Query: 178 FAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPI-TLGNRSKFEHLLLGGNMFQGRIP 236
            + N              +   LD + +    E  + T  N     ++ + G        
Sbjct: 533 ISRNQLLA---PNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP-PADIYC 588

Query: 237 PFFGSFKGTIDLNLSHNNLS 256
            +  SF G    +LS     
Sbjct: 589 VYPDSFSGVSLFSLSTEGCD 608

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 5/118 (4%)

Query: 177 DFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP 236
            +   N    +P     L+ T+ L  S + +      +     + + L LG       I 
Sbjct: 10  FYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 237 P-FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTS 293
              F +      L+L  + +    P   + L  L  L L F      +     F N  
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 55/262 (20%), Positives = 91/262 (34%), Gaps = 38/262 (14%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
            +P  +SP    T L L +N++  +     D F  L   L  L    N+ +  I      
Sbjct: 47  AVPKEISPD--TTLLDLQNNDISELRK---DDFKGL-QHLYALVLVNNKIS-KIHEKAFS 99

Query: 86  Y-FNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE 144
               L +L + +N L   IP ++    +L             +L + +N +         
Sbjct: 100 PLRKLQKLYISKNHLV-EIPPNL--PSSLV------------ELRIHDNRIRKVPKGVFS 144

Query: 145 NLTSLQILNLSCNHLGGSIPKPSGLFS--TLSSIDFAHNNFNGSLPLEVGSLSNTQELDF 202
            L ++  + +  N L  +     G F    L+ +  +       +P          EL  
Sbjct: 145 GLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKLT-GIP--KDLPETLNELHL 200

Query: 203 SEHMLSDEIP-ITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT---IDLNLSHNNLSGT 258
             + +   I    L   SK   L LG N  +  I    GS        +L+L +N LS  
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIEN--GSLSFLPTLRELHLDNNKLS-R 255

Query: 259 IPKELETLPFLENLNLSFNNFE 280
           +P  L  L  L+ + L  NN  
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 38/199 (19%)

Query: 9   NLFR-LQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNL-HGIIPPSLDSFTNLST 63
           NL   L  L   +     V   + S L     +  + +  N L +    P   +F  L  
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGVFSGLR---NMNCIEMGGNPLENSGFEP--GAFDGL-- 172

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIP-FSIGKLQNLQKL----NP 118
           KL  L     +    IP  +P+   L +L LD N +  +I    + +   L +L    N 
Sbjct: 173 KLNYLRISEAKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 119 LAT-SLYSFQ-------LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIP------ 164
           +      S         L+L  N L+  +P  L +L  LQ++ L  N++   +       
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCP 286

Query: 165 -KPSGLFSTLSSIDFAHNN 182
                  +  + I   +N 
Sbjct: 287 VGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 38/196 (19%), Positives = 59/196 (30%), Gaps = 33/196 (16%)

Query: 9   NLFRLQNLNFG-NSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
            L  +  +  G N               KL YL +    L GI P  L     L      
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI-PKDL--PETL----NE 197

Query: 68  LDAGGNQFAGDIPAGI-PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPLAT- 121
           L    N+    I      +Y  L +LGL  N +      S+  L  L++L    N L+  
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256

Query: 122 --SLYSF----QLNLAENNLTGNIPES-------LENLTSLQILNLSCNHLGGSIPKPSG 168
              L        + L  NN+T  +  +                ++L  N +         
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV-PYWEVQPA 314

Query: 169 LFSTLSS---IDFAHN 181
            F  ++    I F + 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 10/146 (6%)

Query: 148 SLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEV-GSLSNTQELDFSEHM 206
            L+++  S   L  ++P    +    + +D  +N+ +  L  +    L +   L    + 
Sbjct: 34  HLRVVQCSDLGLK-AVP--KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 207 LSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKE-LET 265
           +S           K + L +  N     IPP        ++L +  N +   +PK     
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KVPKGVFSG 145

Query: 266 LPFLENLNLSFNNFEGQLPSMSVFTN 291
           L  +  + +  N  E        F  
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDG 171

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 39/263 (14%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI-P 84
           ++P  L P      L L +N +  I       F NL   L  L    N+ +  I  G   
Sbjct: 45  KVPKDLPPD--TALLDLQNNKITEIKD---GDFKNL-KNLHTLILINNKIS-KISPGAFA 97

Query: 85  KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE 144
               L +L L +N L   +P  +   + LQ            +L + EN +T        
Sbjct: 98  PLVKLERLYLSKNQLK-ELPEKM--PKTLQ------------ELRVHENEITKVRKSVFN 142

Query: 145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEVGSLSNTQELD 201
            L  + ++ L  N L  S    +G F  +     I  A  N   ++P   G   +  EL 
Sbjct: 143 GLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNIT-TIP--QGLPPSLTELH 198

Query: 202 FSEHMLSDEIP-ITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT---IDLNLSHNNLSG 257
              + ++ ++   +L   +    L L  N     +    GS   T    +L+L++N L  
Sbjct: 199 LDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDN--GSLANTPHLRELHLNNNKLV- 253

Query: 258 TIPKELETLPFLENLNLSFNNFE 280
            +P  L    +++ + L  NN  
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 51/254 (20%)

Query: 9   NLFR-LQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNLHGI-IPPSLDSFTNLST 63
            + + LQ L       + V+  + + L+   ++  + L +N L    I     +F  +  
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLN---QMIVVELGTNPLKSSGIEN--GAFQGM-K 171

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
           KL  +          IP G+P   +L +L LD N +   +      L+ L  L       
Sbjct: 172 KLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKIT-KVDA--ASLKGLNNLA------ 219

Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNF 183
              +L L+ N+++     SL N   L+ L+L+ N L   +P        +  +   +NN 
Sbjct: 220 ---KLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNN- 274

Query: 184 NGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ-GRIPPFFGSF 242
                     +S     DF         P     ++ +  + L  N  Q   I P   +F
Sbjct: 275 ----------ISAIGSNDFCP-------PGYNTKKASYSGVSLFSNPVQYWEIQP--STF 315

Query: 243 KGTI---DLNLSHN 253
           +       + L + 
Sbjct: 316 RCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 8/145 (5%)

Query: 148 SLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHML 207
            L+++  S   L   +P    L    + +D  +N        +  +L N   L    + +
Sbjct: 32  HLRVVQCSDLGLE-KVP--KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 208 SDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKE-LETL 266
           S   P       K E L L  N  +  +P      K   +L +  N ++  + K     L
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEIT-KVRKSVFNGL 144

Query: 267 PFLENLNLSFNNFEGQLPSMSVFTN 291
             +  + L  N  +        F  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQG 169

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.6 bits (227), Expect = 1e-19
 Identities = 55/280 (19%), Positives = 92/280 (32%), Gaps = 51/280 (18%)

Query: 7   IGNLFRLQNLNFGN--STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTK 64
           I N F L   +F N  S    +  S      K        N    ++   L        +
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI------NQ 60

Query: 65  LRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ----KLNPLA 120
              L       +  +P  +P    +  L + +N L  S+P     L+ L     +L+ L 
Sbjct: 61  FSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL-ISLPELPASLEYLDACDNRLSTLP 116

Query: 121 TSLYSFQ-LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA 179
               S + L++  N LT  +PE       L+ +N   N L   +P+   L ++L  +   
Sbjct: 117 ELPASLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPE---LPTSLEVLSVR 168

Query: 180 HNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF 239
           +N     LP    SL   + LD S ++L   +P         E                 
Sbjct: 169 NNQLT-FLPELPESL---EALDVSTNLLE-SLPAVPVRNHHSEETE-------------- 209

Query: 240 GSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNF 279
                 I      N ++  IP+ + +L     + L  N  
Sbjct: 210 ------IFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 2e-13
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 29/157 (18%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           +P+   +L   ++L+  N+ +   +P   +    L Y++  +N L  + P          
Sbjct: 115 LPELPASL---KHLDVDNNQLT-MLPELPA---LLEYINADNNQLTML-PELP------- 159

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
           T L +L    NQ    +P       +L  L +  N L  S+P    +  + ++       
Sbjct: 160 TSLEVLSVRNNQL-TFLPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETE----- 209

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
                    EN +T +IPE++ +L     + L  N L
Sbjct: 210 ---IFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.3 bits (138), Expect = 9e-09
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 33/161 (20%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           +P+    L   + +N  N+ +   +P   +    L  LS+ +N L  + P   +S     
Sbjct: 135 LPELPALL---EYINADNNQLT-MLPELPT---SLEVLSVRNNQLTFL-PELPES----- 181

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNL----IQLGLDRNCLAGSIPFSIGKLQNLQKLNP 118
             L  LD   N     +PA   +  +     I      N +   IP +I  L     +  
Sbjct: 182 --LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII- 236

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
                      L +N L+  I ESL   T+    +    + 
Sbjct: 237 -----------LEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 61/266 (22%), Positives = 104/266 (39%), Gaps = 38/266 (14%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFA-GDIPAGI- 83
            +P+ +  +   T L L SN L  +       F  L T+L  L    N  +     +   
Sbjct: 21  SVPTGIPSS--ATRLELESNKLQSLPH---GVFDKL-TQLTKLSLSSNGLSFKGCCSQSD 74

Query: 84  PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL 143
               +L  L L  N +  ++  +   L+ L+             L+   +NL      S+
Sbjct: 75  FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE------------HLDFQHSNLKQMSEFSV 121

Query: 144 -ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEV-GSLSNTQ 198
             +L +L  L++S  H        +G+F+ LSS   +  A N+F  +   ++   L N  
Sbjct: 122 FLSLRNLIYLDISHTHTR-VAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 199 ELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT---IDLNLSHNNL 255
            LD S+  L    P    + S  + L +  N F   +      +K       L+ S N++
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDT--FPYKCLNSLQVLDYSLNHI 235

Query: 256 SGTIPKE-LETLP-FLENLNLSFNNF 279
             T  K+ L+  P  L  LNL+ N+F
Sbjct: 236 M-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 28/195 (14%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
               L+ L+   + V   + S+     +L +L    +NL  +   S+  F +L   L  L
Sbjct: 76  GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSL-RNLIYL 131

Query: 69  DAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSI-GKLQNLQKL----NPL 119
           D            GI   F    +L  L +  N    +    I  +L+NL  L      L
Sbjct: 132 DISHTHTR-VAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 120 AT-SLYSFQ-------LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP--SGL 169
              S  +F        LN++ NN         + L SLQ+L+ S NH+  +  K      
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHF 246

Query: 170 FSTLSSIDFAHNNFN 184
            S+L+ ++   N+F 
Sbjct: 247 PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 52/234 (22%), Positives = 81/234 (34%), Gaps = 32/234 (13%)

Query: 9   NLFRLQNLNFGNS--TVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
            L +L  L+  ++  + +G        T+ L YL L  N +   +     +F  L  +L 
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS---NFLGL-EQLE 104

Query: 67  ILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYS 125
            LD   +         +     NLI L +             G    L  L         
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAF--NGIFNGLSSLE-------- 153

Query: 126 FQLNLAENNLTGNIPE-SLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHN 181
             L +A N+   N        L +L  L+LS   L   +      F++LSS   ++ +HN
Sbjct: 154 -VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQL--SPTAFNSLSSLQVLNMSHN 209

Query: 182 NFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITL--GNRSKFEHLLLGGNMFQ 232
           NF  SL       L++ Q LD+S + +             S    L L  N F 
Sbjct: 210 NFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 33/161 (20%), Positives = 50/161 (31%), Gaps = 13/161 (8%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI---DFAHNNFN 184
           L L  N L        + LT L  L+LS N L       S      +S+   D + N   
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 185 GSLPLEVGSLSNTQELDFSEHMLSDEIPI-TLGNRSKFEHLLLGGNMFQGRIPPFFGSFK 243
            ++      L   + LDF    L          +     +L +     +       G F 
Sbjct: 92  -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFN--GIFN 147

Query: 244 GTI---DLNLSHNNLSGTIPKE-LETLPFLENLNLSFNNFE 280
           G      L ++ N+       +    L  L  L+LS    E
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 86.5 bits (215), Expect = 1e-18
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 48/213 (22%)

Query: 398 LAFEFMPNGSLESWLH-PNEATRRLDLAEGLKIAVDI------------------PSNVL 438
           L +++M NG+L+  L+  +  T  +   + L+I +                      N+L
Sbjct: 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINIL 171

Query: 439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSN-SAAVWGSIGYNM--EWVARYQ--HKGKG 493
           LD +    + DFG+++            Q++ S  V G++GY +  E+  + +   K   
Sbjct: 172 LDENFVPKITDFGISK------KGTELDQTHLSTVVKGTLGY-IDPEYFIKGRLTEKSDV 224

Query: 494 YSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQG-VDKDAEDEP 552
           YS G++L E++  +    +             + L E  +E   +  L+  VD      P
Sbjct: 225 YSFGVVLFEVLCARSAIVQSLPR-------EMVNLAEWAVESHNNGQLEQIVD------P 271

Query: 553 CMKAKIR-ECLTSLGRIGIASLTETPNER--MG 582
            +  KIR E L   G   +  L  +  +R  MG
Sbjct: 272 NLADKIRPESLRKFGDTAVKCLALSSEDRPSMG 304

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.1 bits (213), Expect = 1e-18
 Identities = 62/287 (21%), Positives = 93/287 (32%), Gaps = 50/287 (17%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPT---SKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           +I     L+ L    + +   I          S L  L+L +  + G  PP L   T   
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
             L IL+                          RN    +    + +LQ       L   
Sbjct: 123 --LNILNL-------------------------RNVSWATRDAWLAELQQW-----LKPG 150

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL----FSTLSSIDF 178
           L    L++A+ +      E +    +L  L+LS N   G     S L    F TL  +  
Sbjct: 151 LKV--LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 179 AHNNFN---GSLPLEVGSLSNTQELDFSEHMLSDEIP-ITLGNRSKFEHLLLGGNMFQGR 234
            +       G       +    Q LD S + L D     +    S+   L L     + +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 235 IPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
           +P   G       L+LS+N L    P   E LP + NL+L  N F  
Sbjct: 268 VPK--GLPAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 41/237 (17%), Positives = 66/237 (27%), Gaps = 41/237 (17%)

Query: 60  NLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
           +L   L+ +D   +         I K  +L +L +    +   I F   ++  +  L   
Sbjct: 44  SLEYLLKRVDTEADLGQ---FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ-- 98

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLT--SLQILNLSCNHLGGSIPKPSGLFS----TL 173
                  +L L    +TG  P  L   T   L ILNL            + L       L
Sbjct: 99  -------ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 174 SSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG 233
             +  A  +       +V        LD S++    E  +                    
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS------------------ 193

Query: 234 RIPPFFGSFKGTIDLNLSHNN---LSGTIPKELETLPFLENLNLSFNNFEGQLPSMS 287
                   F     L L +      SG           L+ L+LS N+      + S
Sbjct: 194 --ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 30/164 (18%), Positives = 47/164 (28%), Gaps = 23/164 (14%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIP----SHLSPTSKLTYLSLFSNNLHGIIPPSLDSFT 59
            +++     L  L+  ++   GE              L  L+L  N           +  
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL-RNAGMETPSGVCSALA 224

Query: 60  NLSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP 118
               +L+ LD   N       A    +   L  L L    L   +P  +     L  L+ 
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLD- 280

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS 162
                      L+ N L    P   E L  +  L+L  N    S
Sbjct: 281 -----------LSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 21/171 (12%), Positives = 50/171 (29%), Gaps = 23/171 (13%)

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL-----FSTL 173
           L     S +  L   +   ++ +  + + SL +  L+            G       S L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 174 SSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG 233
             +   +    G+ P  +   +       +   +S                    + +  
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS----------------WATRDAWLA 141

Query: 234 RIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP 284
            +  +     G   L+++  +      +++   P L  L+LS N   G+  
Sbjct: 142 ELQQW--LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 48/321 (14%), Positives = 91/321 (28%), Gaps = 36/321 (11%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
             ++     LQ L   +S +             L +L L  N+L  +   S   F  L +
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL---SSSWFGPL-S 98

Query: 64  KLRILDAGGNQFAGDIPAG-IPKYFNLIQLGLDRNCLAGSIP-FSIGKLQNLQKL----N 117
            L+ L+  GN +         P   NL  L +        I       L +L +L     
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 118 PLAT-------SLYSFQ-LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL 169
            L         S+     L L  +     +    + L+S++ L L   +L      P  +
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 170 FSTLSSIDFAHNNFN-------GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKF- 221
               S +       +         L   +  +    E++F +  L+              
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 222 ----------EHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLEN 271
                       L +        +   +   +    + + ++ +        + L  LE 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 272 LNLSFNNFEGQLPSMSVFTNT 292
           L+LS N    +    S     
Sbjct: 339 LDLSENLMVEEYLKNSACKGA 359

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 43/277 (15%), Positives = 86/277 (31%), Gaps = 35/277 (12%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
            L  L + N   S V  E+      T  +  L +    L   +         +    + +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKV----KRI 315

Query: 69  DAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQ 127
               ++    +P    ++  +L  L L  N +      +         L           
Sbjct: 316 TVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ---------T 365

Query: 128 LNLAENNLT--GNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG 185
           L L++N+L       E L  L +L  L++S N               +  ++ +      
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP-EKMRFLNLSSTGIR- 423

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP--FFGSFK 243
            +   +      + LD S + L     + L      + L +  N  +  +P    F    
Sbjct: 424 VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TLPDASLFPVLL 476

Query: 244 GTIDLNLSHNNLSGTIPKE-LETLPFLENLNLSFNNF 279
               + +S N L  ++P    + L  L+ + L  N +
Sbjct: 477 ---VMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 35/284 (12%)

Query: 9   NLFRLQNLNFGNSTVQG--EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS---- 62
                +     + +     ++  ++   S++ +     N L    P   D  + L     
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
             +R L         D+         + ++ ++ + +          L++L+ L+     
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD----- 340

Query: 123 LYSFQLNLAENNLTGNIPES---LENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---I 176
                  L+EN +     ++        SLQ L LS NHL  S+ K   +  TL +   +
Sbjct: 341 -------LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSL 392

Query: 177 DFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP 236
           D + N F+  +P         + L+ S   +     +        E L +  N       
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFS 447

Query: 237 PFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE 280
            F    +   +L +S N L  T+P      P L  + +S N  +
Sbjct: 448 LFLPRLQ---ELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 44/260 (16%), Positives = 75/260 (28%), Gaps = 26/260 (10%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI-P 84
            IPS L+    +  L L  N +  I              L++L    ++    I      
Sbjct: 19  SIPSGLTAA--MKSLDLSFNKITYIGH---GDLRAC-ANLQVLILKSSRIN-TIEGDAFY 71

Query: 85  KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTG-NIPESL 143
              +L  L L  N L+       G L +L+             LNL  N      +    
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLK------------YLNLMGNPYQTLGVTSLF 119

Query: 144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEVGSLSNTQEL 200
            NLT+LQ L +        I +    F+ L+S   ++    +        + S+ +   L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRR--IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 201 DFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIP 260
                  +  + I     S   +L L                + +  +       S    
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 261 KELETLPFLENLNLSFNNFE 280
           +    L  L    L  +  E
Sbjct: 238 ESFNELLKLLRYILELSEVE 257

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 7e-18
 Identities = 50/276 (18%), Positives = 91/276 (32%), Gaps = 41/276 (14%)

Query: 9   NLFRLQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
               LQ L   +   +T++ +  S L     L +L L  N L   +  S   F  L + L
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLG---SLEHLDLSYNYLS-NLSSSW--FKPL-SSL 126

Query: 66  RILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLY 124
             L+  GN +       +  +   L  L +        I         L  L        
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLE------- 177

Query: 125 SFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFN 184
             +L +  ++L    P+SL+++ ++  L L        +          SS         
Sbjct: 178 --ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILL--LEIFVDVTSS--------- 223

Query: 185 GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG 244
               +E   L +T    F    LS     +L  +  F ++ +       ++        G
Sbjct: 224 ----VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG 278

Query: 245 TIDLNLSHNNLSGTIPKE-LETLPFLENLNLSFNNF 279
            ++L  S N L  ++P    + L  L+ + L  N +
Sbjct: 279 LLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 10/159 (6%)

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNF 183
            L+L+ N +T      L+   +LQ L L+ N +  +I      FS+L S   +D ++N  
Sbjct: 56  SLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTI--EEDSFSSLGSLEHLDLSYNYL 112

Query: 184 NGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNR-SKFEHLLLGGNMFQGRIPP-FFG 240
             +L       LS+   L+   +        +L +  +K + L +G      +I    F 
Sbjct: 113 -SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNF 279
                 +L +  ++L    PK L+++  + +L L     
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 38/140 (27%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLD 440
           E++  GSL   LH + A  +LD    L +A D+                      N+L+D
Sbjct: 114 EYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVD 173

Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKGKG 493
              T  V DFGL+R   +   +  K  +      G+     EW+A           K   
Sbjct: 174 KKYTVKVCDFGLSRLKASTFLS-SKSAA------GTP----EWMAPEVLRDEPSNEKSDV 222

Query: 494 YSCGILLLEIMTGKRPTDEM 513
           YS G++L E+ T ++P   +
Sbjct: 223 YSFGVILWELATLQQPWGNL 242

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 51/289 (17%), Positives = 101/289 (34%), Gaps = 30/289 (10%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPT---SKLTYLSLFSNNLHGIIPPSLDSF 58
           ++  ++    +L NL   N          +      + + Y S+ +  L G +      +
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 59  TNLS-TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN 117
           +  S   L I     + F          + N+       +           K+     L+
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS-- 175
                        + N LT  + E+  +LT L+ L L  N L   + K + + + + S  
Sbjct: 331 ------------FSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQ 377

Query: 176 -IDFAHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG 233
            +D + N+ +            +   L+ S ++L+D I   L    + + L L  N  + 
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK- 434

Query: 234 RIPPFFGSFKGTI--DLNLSHNNLSGTIPKE-LETLPFLENLNLSFNNF 279
            IP      K     +LN++ N L  ++P    + L  L+ + L  N +
Sbjct: 435 SIPK--QVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 8e-13
 Identities = 47/310 (15%), Positives = 101/310 (32%), Gaps = 40/310 (12%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
            +E GN+ +L+ L    + ++      ++  +    L +             +   + +T
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNT 165

Query: 64  -KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA-- 120
             L I+     +F   +   +    NL    +          + +  L  LQ    L+  
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 121 ------------------------TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSC 156
                                          + L       +   S  +L +L I  +  
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 157 NHLGGSIPKPSGLFSTLSSIDFAHNNFNG--SLPLEV-GSLSNTQELDFSEHMLSDEIPI 213
           +  G      S ++   S+++  +   +G   + +     +S    LDFS ++L+D +  
Sbjct: 286 DVFGFP---QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 214 TLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG---TIDLNLSHNNLSGTIPKEL-ETLPFL 269
             G+ ++ E L+L  N  +  +               L++S N++S    K        L
Sbjct: 343 NCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 270 ENLNLSFNNF 279
            +LN+S N  
Sbjct: 402 LSLNMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 24/181 (13%)

Query: 8   GNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
             +    +L+F N+ +   +  +    ++L  L L  N L   +    +  T +   L+ 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQM-KSLQQ 378

Query: 68  LDAGGNQFAGDIPAGI-PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF 126
           LD   N  + D   G      +L+ L +  N L  +I   +     ++ L+         
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD--------- 427

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNF 183
              L  N +  +IP+ +  L +LQ LN++ N L  S+P   G+F  L+S   I    N +
Sbjct: 428 ---LHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPD--GIFDRLTSLQKIWLHTNPW 480

Query: 184 N 184
           +
Sbjct: 481 D 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 40/238 (16%)

Query: 59  TNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP 118
            +LS K  IL+   N  +    + I     L  L +  N +           Q L+    
Sbjct: 17  KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY--- 73

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDF 178
                    L+L+ N L   I        +L+ L+LS N    ++P     F  +S    
Sbjct: 74  ---------LDLSHNKLV-KIS--CHPTVNLKHLDLSFNAF-DALPIC-KEFGNMSQ--- 116

Query: 179 AHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPF 238
                     L+   LS T         L     + + + +  + LL+ G  +  +  P 
Sbjct: 117 ----------LKFLGLSTTH--------LEKSSVLPIAHLNISKVLLVLGETYGEKEDP- 157

Query: 239 FGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVIS 296
               +     +L     +      +  +      NL  +N +  L         S+++
Sbjct: 158 -EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 49/322 (15%), Positives = 99/322 (30%), Gaps = 43/322 (13%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           VP+++    +   LN   + +     S +   SKL  L +  N +  +       F    
Sbjct: 15  VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI---SVFKFN- 68

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFS--IGKLQNLQKLNPLA 120
            +L  LD   N+    I        NL  L L  N    ++P     G +  L+ L    
Sbjct: 69  QELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLST 124

Query: 121 TSLYS-------------FQLNLAENNLTGNIPESLENL--TSLQILNLSCNHLGGSIPK 165
           T L                 L L E       PE L++    SL I+  +       +  
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 166 PSGLFSTLSSIDFAHN------NFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGN-- 217
                + L   +          ++  S+  ++ +      L  +    +    I +    
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244

Query: 218 -RSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF-----LEN 271
             +   +  +     QG++      + GT    LS + +   +    ++  +     +  
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 272 LNLSFNNFEGQLPSMSVFTNTS 293
            N + +    ++  M   +  S
Sbjct: 305 KNFTVSGT--RMVHMLCPSKIS 324

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 35/197 (17%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD 442
           E++  G+L   +   +   +   ++ +  A DI                    N L+  +
Sbjct: 87  EYIKGGTLRGIIKSMD--SQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVREN 144

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVA-------RYQHKGK 492
               V DFGLAR +    T P   +S          ++  N  W+A        Y  K  
Sbjct: 145 KNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVD 204

Query: 493 GYSCGILLLEIMTGKRPTDEMF----ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDA 548
            +S GI+L EI+       +         L++  F +   P +     +   ++  D D 
Sbjct: 205 VFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDP 264

Query: 549 EDEPCMKAKIRECLTSL 565
           E  P    K+   L +L
Sbjct: 265 EKRPSF-VKLEHWLETL 280

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 39/227 (17%), Positives = 67/227 (29%), Gaps = 70/227 (30%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIP-------------------------- 434
            F   GSL  +L  N     +   E   IA  +                           
Sbjct: 102 AFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDI 157

Query: 435 --SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY--------NMEWV 484
              NVLL  ++TA + DFGLA       +       ++    G+  Y         + + 
Sbjct: 158 KSKNVLLKNNLTACIADFGLALKFEAGKS-----AGDTHGQVGTRRYMAPEVLEGAINFQ 212

Query: 485 ARYQHKGKGYSCGILLLEIMTGKRPTDEM-------FADCLSLH-NFCEM---------- 526
                +   Y+ G++L E+ +     D         F + +  H +  +M          
Sbjct: 213 RDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKR 272

Query: 527 -ALPESVMELVYSRLLQG-----VDKDAEDEPCMKAKIRECLTSLGR 567
             L +   +     +L        D DAE        + E +T + R
Sbjct: 273 PVLRDYWQKHAGMAMLCETIEECWDHDAEARLSA-GCVGERITQMQR 318

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 43/142 (30%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------------PSNVLL 439
           E+   GSL + LH  E       A  +   +                       P N+LL
Sbjct: 79  EYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLL 138

Query: 440 DYDMTAY-VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA-------RYQHKG 491
               T   + DFG A  + T++TN  KG             +  W+A        Y  K 
Sbjct: 139 VAGGTVLKICDFGTACDIQTHMTN-NKG-------------SAAWMAPEVFEGSNYSEKC 184

Query: 492 KGYSCGILLLEIMTGKRPTDEM 513
             +S GI+L E++T ++P DE+
Sbjct: 185 DVFSWGIILWEVITRRKPFDEI 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 68/264 (25%), Positives = 105/264 (39%), Gaps = 39/264 (14%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI-P 84
           E+P  +       YL+L  NN+  I     D+F +L   L +L  G N     I  G   
Sbjct: 68  EVPQGIPSN--TRYLNLMENNIQMIQA---DTFRHL-HHLEVLQLGRNSIR-QIEVGAFN 120

Query: 85  KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPE-SL 143
              +L  L L  N L   IP   G  + L KL          +L L  N +  +IP  + 
Sbjct: 121 GLASLNTLELFDNWLT-VIPS--GAFEYLSKLR---------ELWLRNNPIE-SIPSYAF 167

Query: 144 ENLTSLQILNLS-CNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEVGSLSNTQE 199
             + SL  L+L     L   I    G F  L +   ++    N    +P  +  L   +E
Sbjct: 168 NRVPSLMRLDLGELKKLE-YIS--EGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEE 222

Query: 200 LDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI---DLNLSHNNLS 256
           L+ S +   +  P +    S  + L +  +     I     +F G     +LNL+HNNLS
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER--NAFDGLASLVELNLAHNNLS 279

Query: 257 GTIPKE-LETLPFLENLNLSFNNF 279
            ++P +    L +L  L+L  N +
Sbjct: 280 -SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 33/196 (16%)

Query: 9   NLFRLQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
            L  L  L   +   + +      +LS   KL  L L +N +   IP    +F  +   L
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLS---KLRELWLRNNPIE-SIPS--YAFNRV-PSL 173

Query: 66  RILD-AGGNQFAGDIPAGI-PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL----NPL 119
             LD     +    I  G     FNL  L L    +   +P ++  L  L++L    N  
Sbjct: 174 MRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230

Query: 120 AT-SLYSFQ-------LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS 171
                 SF        L +  + ++     + + L SL  LNL+ N+L  S+  P  LF+
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSL--PHDLFT 287

Query: 172 TLSS---IDFAHNNFN 184
            L     +   HN +N
Sbjct: 288 PLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 17/161 (10%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFN 184
           LNL ENN+     ++  +L  L++L L  N +   I    G F+ L+S   ++   N   
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQI--EVGAFNGLASLNTLELFDNWLT 136

Query: 185 GSLPLEV-GSLSNTQELDFSEHMLSDEIPI-TLGNRSKFEHLLLGGNMFQGRIPPFFGSF 242
             +P      LS  +EL    + +   IP            L LG       I    G+F
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE--GAF 192

Query: 243 KGTIDL---NLSHNNLSGTIPKELETLPFLENLNLSFNNFE 280
           +G  +L   NL   N+   +P  L  L  LE L +S N+F 
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 64/261 (24%), Positives = 92/261 (35%), Gaps = 59/261 (22%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
           E+P  +S       L+L  N +  I     +SF +L   L IL    N     I  G   
Sbjct: 57  EVPDGISTN--TRLLNLHENQIQIIKV---NSFKHL-RHLEILQLSRNHIR-TIEIGA-- 107

Query: 86  YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN 145
                                      L  LN          L L +N LT     +   
Sbjct: 108 ------------------------FNGLANLN---------TLELFDNRLTTIPNGAFVY 134

Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEV-GSLSNTQELD 201
           L+ L+ L L  N +  SIP  S  F+ + S   +D         +       LSN + L+
Sbjct: 135 LSKLKELWLRNNPIE-SIP--SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 202 FSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI---DLNLSHNNLSGT 258
            +   L  EIP  L    K + L L GN     I P  GSF+G +    L +  + +   
Sbjct: 192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRP--GSFQGLMHLQKLWMIQSQIQ-V 245

Query: 259 IPKE-LETLPFLENLNLSFNN 278
           I +   + L  L  +NL+ NN
Sbjct: 246 IERNAFDNLQSLVEINLAHNN 266

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 53/230 (23%), Positives = 82/230 (35%), Gaps = 29/230 (12%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSH-LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
           +L  L+ L    + ++  I     +  + L  L LF N L  I      +F  L +KL+ 
Sbjct: 86  HLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTI---PNGAFVYL-SKLKE 140

Query: 68  LDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF 126
           L    N     IP+       +L +L L        I    G  + L  L          
Sbjct: 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLR--------- 188

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNF 183
            LNLA  NL   IP +L  L  L  L+LS NHL  +I    G F  L     +    +  
Sbjct: 189 YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIR--PGSFQGLMHLQKLWMIQSQI 243

Query: 184 NGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ 232
              +      +L +  E++ + + L+             E + L  N + 
Sbjct: 244 Q-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 8e-09
 Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 17/161 (10%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFN 184
           LNL EN +      S ++L  L+IL LS NH+  +I    G F+ L++   ++   N   
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTI--EIGAFNGLANLNTLELFDNRLT 125

Query: 185 GSLPLEV-GSLSNTQELDFSEHMLSDEIPI-TLGNRSKFEHLLLGGNMFQGRIPPFFGSF 242
            ++P      LS  +EL    + +   IP            L LG       I    G+F
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE--GAF 181

Query: 243 KGTI---DLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE 280
           +G      LNL+  NL   IP  L  L  L+ L+LS N+  
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 56/266 (21%), Positives = 84/266 (31%), Gaps = 65/266 (24%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
            +P  +        + L  N +  +      SF      L IL    N  A  I A    
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPA---ASFRAC-RNLTILWLHSNVLA-RIDAAA-- 75

Query: 86  YF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPE 141
            F     L QL L  N    S+  +      L +L+          L+L    L   +  
Sbjct: 76  -FTGLALLEQLDLSDNAQLRSVDPAT--FHGLGRLH---------TLHLDRCGLQ-ELGP 122

Query: 142 -SLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEVGSLSNT 197
                L +LQ L L  N L  ++P     F  L +   +    N  +    +   +    
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALP--DDTFRDLGNLTHLFLHGNRISS---VPERAFRGL 176

Query: 198 QELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT---IDLNLSHNN 254
             L                     + LLL  N     + P   +F+     + L L  NN
Sbjct: 177 HSL---------------------DRLLLHQNRVA-HVHP--HAFRDLGRLMTLYLFANN 212

Query: 255 LSGTIPKE-LETLPFLENLNLSFNNF 279
           LS  +P E L  L  L+ L L+ N +
Sbjct: 213 LS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 31/184 (16%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSH-LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
            L  L+ L+  ++     +         +L  L L    L   + P    F  L   L+ 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP--GLFRGL-AALQY 133

Query: 68  LDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
           L    N     +P      F    NL  L L  N ++     +   L +L +L       
Sbjct: 134 LYLQDNALQ-ALPDDT---FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL------ 183

Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAH 180
                 L +N +    P +  +L  L  L L  N+L  ++P      + L +   +    
Sbjct: 184 ------LHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPT--EALAPLRALQYLRLND 234

Query: 181 NNFN 184
           N + 
Sbjct: 235 NPWV 238

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 31/137 (22%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD 442
           ++    SL   LH +E   + ++ + + IA                      +N+ L  D
Sbjct: 99  QWCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHED 156

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY------NMEWVARYQHKGKGYSC 496
            T  +GDFGLA        +   G      + GSI +       M+    Y  +   Y+ 
Sbjct: 157 NTVKIGDFGLAT-----EKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAF 211

Query: 497 GILLLEIMTGKRPTDEM 513
           GI+L E+MTG+ P   +
Sbjct: 212 GIVLYELMTGQLPYSNI 228

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 51/295 (17%), Positives = 89/295 (30%), Gaps = 51/295 (17%)

Query: 28  PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI-PKY 86
            +  S    L +L +       +I    ++F  L + L IL    NQF   +  G     
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGL-SSLIILKLDYNQFL-QLETGAFNGL 102

Query: 87  FNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL-EN 145
            NL  L L +  L      S    + L  L           L L +NN+    P S   N
Sbjct: 103 ANLEVLTLTQCNLD-GAVLSGNFFKPLTSLE---------MLVLRDNNIKKIQPASFFLN 152

Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH----NNFNGSLPLEVGS-------- 193
           +    +L+L+ N +                  F      +     +              
Sbjct: 153 MRRFHVLDLTFNKVKSI---CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 194 -LSNTQELDFSEHMLSDEIP---ITLGNRSKFEHLLLGGNMFQGRIPPF-------FGSF 242
             ++   LD S +   + +          +K + L+L  +   G              +F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 243 KG-----TIDLNLSHNNLSGTIPKEL-ETLPFLENLNLSFNNFEGQLPSMSVFTN 291
           KG         +LS + +   + K +      LE L L+ N    ++   + F  
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDD-NAFWG 321

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 70/310 (22%), Positives = 102/310 (32%), Gaps = 44/310 (14%)

Query: 9   NLFRLQNLNFGNSTVQGEIPS-HLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
            L  L  L    +    ++ +   +  + L  L+L   NL G +    + F  L T L +
Sbjct: 77  GLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPL-TSLEM 133

Query: 68  LDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
           L    N      PA     F        L L  N +  SI      L N Q  +     L
Sbjct: 134 LVLRDNNIKKIQPASF---FLNMRRFHVLDLTFNKVK-SICEED--LLNFQGKHFTLLRL 187

Query: 124 YSFQL-NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI------ 176
            S  L ++ E  L      +    TS+  L+LS N    S    +  F    +       
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES---MAKRFFDAIAGTKIQSL 244

Query: 177 ----------DFAHNNFNGSLPLEVGSL--SNTQELDFSEHMLSDEIPITLGNRSKFEHL 224
                      F H NF          L  S  +  D S+  +   +     + +  E L
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304

Query: 225 LLGGNMFQGRIPPFFGSFKGT---IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG 281
            L  N    +I     +F G    + LNLS N L     +  E L  LE L+LS+N+   
Sbjct: 305 TLAQNEIN-KIDD--NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR- 360

Query: 282 QLPSMSVFTN 291
            L     F  
Sbjct: 361 ALGD-QSFLG 369

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 62/319 (19%), Positives = 109/319 (34%), Gaps = 60/319 (18%)

Query: 9   NLFRLQNLNFGNSTVQGEI--PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
            L  L+ L      + G +   +   P + L  L L  NN+  I P S   F N+  +  
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF--FLNM-RRFH 157

Query: 67  ILDAGGNQFAGDIPAGIPKYF---NLIQLGLDRNCLAGSIPFSIG--------KLQNLQK 115
           +LD   N+    I       F   +   L L    L     + +G        K  ++  
Sbjct: 158 VLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 116 L----NPLA-------------TSLYSFQLNLAEN---NLTGNIPESLENLT-------S 148
           L    N                T + S  L+ + N   +      +  +N T        
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 149 LQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEV-GSLSNTQELDFSE 204
           ++  +LS + +  ++     +FS  +    +  A N  N  +       L++  +L+ S+
Sbjct: 277 VKTCDLSKSKIF-ALL--KSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQ 332

Query: 205 HMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI---DLNLSHNNLSGTIPK 261
           + L         N  K E L L  N  +  +     SF G     +L L  N L  ++P 
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGD--QSFLGLPNLKELALDTNQLK-SVPD 388

Query: 262 E-LETLPFLENLNLSFNNF 279
              + L  L+ + L  N +
Sbjct: 389 GIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 31/185 (16%)

Query: 6   EIGNLFRLQNL------NFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHG-------IIP 52
           + GN F+  ++        G      +        +K+  L L ++   G          
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 53  PSLDSFTNLS-TKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKL 110
           P   +F  L  + ++  D   ++    +   +  +F +L QL L +N +   I       
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KID--DNAF 319

Query: 111 QNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLF 170
             L  L          +LNL++N L        ENL  L++L+LS NH+  ++      F
Sbjct: 320 WGLTHLL---------KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGD--QSF 367

Query: 171 STLSS 175
             L +
Sbjct: 368 LGLPN 372

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 30/228 (13%)

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI---DFAHNNF 183
            ++L+ N++      S   L  LQ L +     G  I   +  F  LSS+      +N F
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKLDYNQF 91

Query: 184 NGSLPLEV-GSLSNTQELDFSEHMLSDEI--PITLGNRSKFEHLLLGGNMFQGRIPP--F 238
              L       L+N + L  ++  L   +         +  E L+L  N  + +I P  F
Sbjct: 92  -LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASF 149

Query: 239 FGSFKGTIDLNLSHNNLS--------GTIPKELETLPFLENLNLSFNNFEGQLPSMSVF- 289
           F + +    L+L+ N +             K    L          N +           
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 290 --TNTSVISIVGN-------GKLCGGVPELRLLSCAIESSKKQIHHLG 328
             T+ + + + GN        +    +   ++ S  + +S       G
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 62/262 (23%), Positives = 95/262 (36%), Gaps = 58/262 (22%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIP- 84
           +IP +L P S    L L  N L  +      SF +   +L++LD    +    I  G   
Sbjct: 21  KIPDNL-PFS-TKNLDLSFNPLRHLGS---YSFFSF-PELQVLDLSRCEIQ-TIEDGAYQ 73

Query: 85  KYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL 143
              +L  L L  N +  S+       L +LQKL               E NL  ++    
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV------------AVETNLA-SLENFP 119

Query: 144 -ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS---IDFAHNNFNGSLPLEV-GSLSNTQ 198
             +L +L+ LN++ N +  S   P   FS L++   +D + N    S+       L    
Sbjct: 120 IGHLKTLKELNVAHNLIQ-SFKLP-EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176

Query: 199 ELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT--IDLNLSHNNLS 256
            L+ S                    L L  N     I P  G+FK     +L L  N L 
Sbjct: 177 LLNLS--------------------LDLSLNPMN-FIQP--GAFKEIRLKELALDTNQLK 213

Query: 257 GTIPKE-LETLPFLENLNLSFN 277
            ++P    + L  L+ + L  N
Sbjct: 214 -SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 30/214 (14%)

Query: 28  PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF 87
                   +L  L L    +   I     ++ +L + L  L   GN     +  G     
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIED--GAYQSL-SHLSTLILTGNPIQ-SLALGAFSGL 99

Query: 88  -NLIQLGLDRNCLAGSIP-FSIGKLQNLQKLNPLATSLYSFQLNLAENNLTG-NIPESLE 144
            +L +L      LA S+  F IG L+ L+            +LN+A N +    +PE   
Sbjct: 100 SSLQKLVAVETNLA-SLENFPIGHLKTLK------------ELNVAHNLIQSFKLPEYFS 146

Query: 145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA------HNNFNGSLPLEVGSLSNTQ 198
           NLT+L+ L+LS N +  SI         L  +           N    +          +
Sbjct: 147 NLTNLEHLDLSSNKI-QSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203

Query: 199 ELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ 232
           EL    + L           +  + + L  N + 
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 43/174 (24%), Positives = 60/174 (34%), Gaps = 38/174 (21%)

Query: 9   NLFRLQNLN-FGN--STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
           +L  L  L   GN   ++     S LS    L  L     NL   +        +L   L
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLS---SLQKLVAVETNLA-SLEN--FPIGHL-KTL 126

Query: 66  RILDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
           + L+   N         +P+YF    NL  L L  N +  SI      L+ L ++  L  
Sbjct: 127 KELNVAHNLIQ-SFK--LPEYFSNLTNLEHLDLSSNKIQ-SIY--CTDLRVLHQMPLLNL 180

Query: 122 SLY------------SFQ------LNLAENNLTGNIPESLENLTSLQILNLSCN 157
           SL             +F+      L L  N L        + LTSLQ + L  N
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 38/184 (20%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK---------------------- 165
           L+L+ N L      S  +   LQ+L+LS   +  +I                        
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 166 PSGLFSTLSSIDFAHNNFNG--SLPLEV-GSLSNTQELDFSE-HMLSDEIPITLGNRSKF 221
             G FS LSS+           SL     G L   +EL+ +   + S ++P    N +  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 222 EHLLLGGNMFQGRIPPFFGSFKG-------TIDLNLSHNNLSGTIPKELETLPFLENLNL 274
           EHL L  N  Q  I       +         + L+LS N ++  I         L+ L L
Sbjct: 152 EHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207

Query: 275 SFNN 278
             N 
Sbjct: 208 DTNQ 211

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 8   GNLFRLQNLNFG-NSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
           G+L  L+ LN   N     ++P + S  + L +L L SN +  I    L     +     
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 67  ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKLN 117
            LD   N     I  G  K   L +L LD N L  S+P  I  +L +LQK+ 
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIW 230

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 47/143 (32%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLD 440
            +MP GSL + LH       +D ++ +K A+D+                      +V++D
Sbjct: 89  HWMPYGSLYNVLHEGT-NFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMID 147

Query: 441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA----------RYQHK 490
            DMTA +    +             G+           Y   WVA            +  
Sbjct: 148 EDMTARISMADVKFSF------QSPGRM----------YAPAWVAPEALQKKPEDTNRRS 191

Query: 491 GKGYSCGILLLEIMTGKRPTDEM 513
              +S  +LL E++T + P  ++
Sbjct: 192 ADMWSFAVLLWELVTREVPFADL 214

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.8 bits (181), Expect = 5e-14
 Identities = 48/287 (16%), Positives = 94/287 (32%), Gaps = 26/287 (9%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPT---SKLTYLSLFSNNLHGIIPPSLDSF 58
               E+     L N+   +     +    L        + YL++++  +   I     ++
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 59  TNLSTK-LRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN 117
           +  + K L I       F     A    +  +    L  +              +   LN
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID 177
                         +N  T ++ +    L  LQ L L  N L  +  K + +   +SS++
Sbjct: 360 ------------FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLE 406

Query: 178 FAHNNFN----GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG 233
               + N     +         +   L+ S +ML+  +   L    K + L L  N    
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463

Query: 234 RIPPFFGSFKGTIDLNLSHNNLSGTIPKE-LETLPFLENLNLSFNNF 279
            IP      +   +LN++ N L  ++P    + L  L+ + L  N +
Sbjct: 464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 43/268 (16%)

Query: 27  IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY 86
           +P  L P      LSL  N++  +  P +   +     LR+L    N+    +   +   
Sbjct: 46  VPKDLPPR--TKALSLSQNSISELRMPDISFLSE----LRVLRLSHNRIR-SLDFHV--- 95

Query: 87  F----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPES 142
           F    +L  L +  N L  +I      + +L+             L+L+ N+    +P  
Sbjct: 96  FLFNQDLEYLDVSHNRLQ-NISC--CPMASLR------------HLDLSFNDFD-VLPVC 139

Query: 143 LE--NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP---LEVGSLSNT 197
            E  NLT L  L LS               + L       +  +  +     E   + NT
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196

Query: 198 QELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGR-----IPPFFGSFKGTIDLNLSH 252
             L    H  S        + +   HL L             +       +G   LN++ 
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 253 NNLSGTIPKELETLPFLENLNLSFNNFE 280
            ++  T    ++   F     + + N  
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIY 284

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 39/274 (14%), Positives = 85/274 (31%), Gaps = 19/274 (6%)

Query: 16  LNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTK-LRILDAGGNQ 74
           L+  +  ++G     L      T L L  +           S   L    L  +      
Sbjct: 176 LDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 75  FAG--DIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAE 132
                   + + +   L+ + L            + +    + +      L  + L + E
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV----EYLNIYNLTITE 290

Query: 133 NNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVG 192
                    S   L SL I ++        +     L+S  + ++    + + +  + + 
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVF---LFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 193 ---SLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL- 248
              S S+   L+F++++ +D +        + + L+L  N  +          K    L 
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLE 406

Query: 249 --NLSHNNLSGTIPKELETLPF-LENLNLSFNNF 279
             ++S N+L+             +  LNLS N  
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 52/341 (15%), Positives = 107/341 (31%), Gaps = 54/341 (15%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHL-SPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
             +I  L  L+ L   ++ ++  +  H+      L YL +  N L  I      S   + 
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNI------SCCPM- 120

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP 118
             LR LD   N F   +P    K F     L  LGL        +      + +L     
Sbjct: 121 ASLRHLDLSFNDFD-VLPVC--KEFGNLTKLTFLGLSAAKFR-QLDL--LPVAHLH---- 170

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDF 178
               L    L+L   ++ G   ESL+   +  +L+L  +       + +   + L  +  
Sbjct: 171 ----LSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 179 AHNNFNG-------SLPLEVGSLSNTQELDFSEHMLSDEIPITLGN---RSKFEHLLLGG 228
           ++   N        +   E+        +       + +  + L         E+L +  
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF-----LENLNLSFNNFEGQL 283
                RI     ++  T   +L   ++   +    +   +     +    LS ++     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT--PF 343

Query: 284 PSMSVF---TNTSVISIVGNG------KLCGGVPELRLLSC 315
             M      ++ + ++   N       + C  +  L+ L  
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 40/227 (17%), Positives = 85/227 (37%), Gaps = 16/227 (7%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI---DFAHNNFN 184
           L+L++N+++      +  L+ L++L LS N +  S+     +F     +   D +HN   
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSL--DFHVFLFNQDLEYLDVSHNRL- 112

Query: 185 GSLPLEVGSLSNTQELDFSEHMLSDEIPIT--LGNRSKFEHLLLGGNMFQGRIPPFFGSF 242
            ++      +++ + LD S +   D +P+    GN +K   L L    F+          
Sbjct: 113 QNISC--CPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 243 K-GTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNG 301
               I L+L   ++ G   + L+       L+L F+     L S+ V  + + +  +   
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHP--NSLFSVQVNMSVNALGHLQLS 226

Query: 302 KLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIML 348
            +       + L   +    +    L   +    + W C   +    
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 7e-14
 Identities = 44/284 (15%), Positives = 85/284 (29%), Gaps = 28/284 (9%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
                   N    +V   +    +  + +  +   ++++      S+     L   +  L
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----SVQGIQYL-PNVTKL 70

Query: 69  DAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN----------P 118
              GN+   DI   +    NL  L LD N +   +  S+  L+ L+ L+           
Sbjct: 71  FLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDING 126

Query: 119 LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDF 178
           L        L L  N +T +I   L  LT L  L+L  N +   I   +GL + L ++  
Sbjct: 127 LVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQI-SDIVPLAGL-TKLQNLYL 182

Query: 179 AHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPF 238
           + N+ +    L    L N   L+       ++      N      +              
Sbjct: 183 SKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 239 FGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQ 282
                   ++       +  +         +      F+    Q
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQ 284

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 8e-10
 Identities = 44/289 (15%), Positives = 92/289 (31%), Gaps = 32/289 (11%)

Query: 106 SIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK 165
            I       +           + NL + ++T  +      L S+  +  + +     I  
Sbjct: 13  QIFPDDAFAETI---------KDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKS 57

Query: 166 PSGL--FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEH 223
             G+     ++ +    N      PL   +L N   L   E+ + D     L +  K + 
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSS--LKDLKKLKS 113

Query: 224 LLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQL 283
           L L  N     I            L L +N ++      L  L  L+ L+L  N     +
Sbjct: 114 LSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI 168

Query: 284 PSMSVFTNTSVISIVGNG--KLCG--GVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWG 339
             ++  T    + +  N    L    G+  L +L    +    +  +  + +   N++  
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK- 227

Query: 340 CLFDILIMLSVGVFQKRKPRRPSLRSSLGEEFLRIPYDELLRATDGSSM 388
              D  ++    +       +P+++  L E    + +      T G + 
Sbjct: 228 -NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 275

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 50/147 (34%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLD 440
           EF+P G L   L   +    +  +  L++ +DI                      N+ L 
Sbjct: 101 EFVPCGDLYHRLL--DKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQ 158

Query: 441 -----YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA---------R 486
                  + A V DFGL++    +V+             G +G N +W+A          
Sbjct: 159 SLDENAPVCAKVADFGLSQQSVHSVS-------------GLLG-NFQWMAPETIGAEEES 204

Query: 487 YQHKGKGYSCGILLLEIMTGKRPTDEM 513
           Y  K   YS  ++L  I+TG+ P DE 
Sbjct: 205 YTEKADTYSFAMILYTILTGEGPFDEY 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 56/303 (18%), Positives = 100/303 (33%), Gaps = 53/303 (17%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS------ 62
            L     +  G S V   +    +    +T LS F   +  I    +    NL       
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 63  ------------TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKL 110
                       TK+  L+  GN    ++   I    ++  L L    +    P +   L
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLA--GL 128

Query: 111 QNLQKLN----------PLA--TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNH 158
            NLQ L           PLA  T+L    L++    ++ ++   L NL+ L  L    N 
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQY--LSIGNAQVS-DL-TPLANLSKLTTLKADDNK 184

Query: 159 LGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNR 218
           +   I   + L   L  +   +N  +   PL   + SN   +  +   ++++      N 
Sbjct: 185 I-SDISPLASL-PNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNNN- 239

Query: 219 SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNN 278
                  +        I P   S  GT     +  NL+  +   +  + +  N +++F N
Sbjct: 240 --LVVPNVVKGPSGAPIAPATISDNGT----YASPNLTWNLTSFINNVSYTFNQSVTFKN 293

Query: 279 FEG 281
              
Sbjct: 294 TTV 296

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 43/204 (21%)

Query: 401 EFMPNGSLESWLHPNEATRR------LDLAEGL-------------KIAV---DI-PSNV 437
           E+ PNGSL  +L  + +           +  GL             K A+   D+   NV
Sbjct: 92  EYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNV 151

Query: 438 LLDYDMTAYVGDFGLAR-FLPTNVTNPMKGQSNSAAVWGSIGY----------NMEWVAR 486
           L+  D T  + DFGL+       +  P +  + + +  G+I Y          N+     
Sbjct: 152 LVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXES 211

Query: 487 YQHKGKGYSCGILLLEIM---TGKRPTDEM------FADCLSLHNFCEMALPESVMELVY 537
              +   Y+ G++  EI    T   P + +      F   +  H   E        E   
Sbjct: 212 ALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQR 271

Query: 538 SRLLQGVDKDAEDEPCMKAKIREC 561
            +  +   +++     +K  I +C
Sbjct: 272 PKFPEAWKENSLAVRSLKETIEDC 295

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 56/321 (17%), Positives = 93/321 (28%), Gaps = 47/321 (14%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
           N        F                + LT L   ++++       +     L T L  L
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-----DMTGIEKL-TGLTKL 69

Query: 69  DAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF-- 126
               N     +        NL  L  D N L  ++  +   L  L  LN     L     
Sbjct: 70  ICTSNNIT-TLDLSQNT--NLTYLACDSNKLT-NLDVT--PLTKLTYLNCDTNKLTKLDV 123

Query: 127 -------QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA 179
                   LN A N LT  I   + + T L  L+   N             + L+++D +
Sbjct: 124 SQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCS 178

Query: 180 HNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF 239
            N       L+V        L+   + ++    + L    +   L    N     I    
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID--V 229

Query: 240 GSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVG 299
                    + S N L+  +   + TL  L  L+    +   ++  ++  T        G
Sbjct: 230 TPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID-LTHNTQLIYFQAEG 284

Query: 300 NGKLC----GGVPELRLLSCA 316
             K+         +L LL C 
Sbjct: 285 CRKIKELDVTHNTQLYLLDCQ 305

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 41/328 (12%), Positives = 92/328 (28%), Gaps = 40/328 (12%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS--- 62
           ++ +  +L  L+   +    ++   ++P ++LT L    N +  +          L+   
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDT 200

Query: 63  -----------TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQ 111
                       +L  LD   N+   +I   +     L       N L   +  S   L 
Sbjct: 201 NNITKLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLS 254

Query: 112 NLQKLNPLATSLYSFQL-------NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIP 164
            L  L+ + T L    L                     + + T L +L+     +   + 
Sbjct: 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI-TEL- 312

Query: 165 KPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHL 224
                   L  +   +      L +     +  + L      + D    ++G      + 
Sbjct: 313 -DLSQNPKLVYLYLNNTELT-ELDV--SHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNN 366

Query: 225 LLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSG---TIPKELETLPFLENLNLSFNNFEG 281
                           +   TI ++    +  G    I      +       +++ N   
Sbjct: 367 FEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLST 426

Query: 282 QLPSMSVFTNTSVISIVGNGKLCGGVPE 309
             P+++    +   +IVG        P+
Sbjct: 427 DNPAVTYTFTSENGAIVGTVTTPFEAPQ 454

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 51/169 (30%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------------P 434
            +   GSL  +L        LD    L+I + I                           
Sbjct: 86  HYHEMGSLYDYLQLTT----LDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKS 141

Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY----------NMEWV 484
            N+L+  +    + D GLA    +  TN +   +N     G+  Y           ++  
Sbjct: 142 KNILVKKNGQCCIADLGLAVMH-SQSTNQLDVGNNPRV--GTKRYMAPEVLDETIQVDC- 197

Query: 485 ARYQHKGKGYSCGILLLEIMTGKRPTDEM------FADCLSLH-NFCEM 526
                +   ++ G++L E+         +      F D +    +F +M
Sbjct: 198 FDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDM 246

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 35/143 (24%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD 442
                 +L S +   +    LD+ +  +IA +I                    NV  D +
Sbjct: 109 SLCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-N 165

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY------------NMEWVARYQHK 490
               + DFGL     + V    + +       G + +              E    +   
Sbjct: 166 GKVVITDFGLFSI--SGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKH 223

Query: 491 GKGYSCGILLLEIMTGKRPTDEM 513
              ++ G +  E+   + P    
Sbjct: 224 SDVFALGTIWYELHAREWPFKTQ 246

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 53/149 (35%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------------PSNVLL 439
           EF   G L   L      +R+     +  AV I                      SN+L+
Sbjct: 86  EFARGGPLNRVLS----GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILI 141

Query: 440 DYDMTAY--------VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA------ 485
              +           + DFGLAR            ++   +  G+      W+A      
Sbjct: 142 LQKVENGDLSNKILKITDFGLARE---------WHRTTKMSAAGAY----AWMAPEVIRA 188

Query: 486 -RYQHKGKGYSCGILLLEIMTGKRPTDEM 513
             +      +S G+LL E++TG+ P   +
Sbjct: 189 SMFSKGSDVWSYGVLLWELLTGEVPFRGI 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 30/209 (14%)

Query: 27  IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIP-K 85
           IPS++ P      L L SN L  +      +F  L TKLR+L    N+    +PAGI  +
Sbjct: 31  IPSNI-PAD-TKKLDLQSNKLSSLPS---KAFHRL-TKLRLLYLNDNKLQ-TLPAGIFKE 83

Query: 86  YFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL- 143
             NL  L +  N L  ++P  +  +L NL +            L L  N L  ++P  + 
Sbjct: 84  LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAE------------LRLDRNQLK-SLPPRVF 129

Query: 144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID--FAHNNFNGSLPLEV-GSLSNTQEL 200
           ++LT L  L+L  N L  S+  P G+F  L+S+     +NN    +P      L+  + L
Sbjct: 130 DSLTKLTYLSLGYNEL-QSL--PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 201 DFSEHMLSDEIPITLGNRSKFEHLLLGGN 229
               + L         +  K + L L  N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 32/157 (20%)

Query: 9   NLFRLQNLNFGN---STVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
            L  L+ L   +     +   +   L     L  L L  N L  + PP +  F +L TKL
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQLV---NLAELRLDRNQLKSL-PPRV--FDSL-TKL 135

Query: 66  RILDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLA 120
             L  G N+    +P G+   F    +L +L L  N L   +P     KL  L+      
Sbjct: 136 TYLSLGYNELQ-SLPKGV---FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELK------ 184

Query: 121 TSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCN 157
                  L L  N L      + ++L  L++L L  N
Sbjct: 185 ------TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 20/162 (12%)

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG- 185
           +L+L  N L+    ++   LT L++L L+ N L  ++  P+G+F  L +++      N  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTL--PAGIFKELKNLETLWVTDNKL 97

Query: 186 -SLPLEV-GSLSNTQELDFSE---HMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
            +LP+ V   L N  EL         L   +  +L   +K  +L LG N  Q  +P   G
Sbjct: 98  QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL---TKLTYLSLGYNELQ-SLPK--G 151

Query: 241 SFKGTI---DLNLSHNNLSGTIPKEL-ETLPFLENLNLSFNN 278
            F       +L L +N L   +P+   + L  L+ L L  N 
Sbjct: 152 VFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 28/232 (12%)

Query: 54  SLDSFTNLSTKLRILDAGGNQFAGDIPAGI-PKYFNLIQLGLDRNCLAGSIPFSIGKLQN 112
            +    +L    + L          IP+       N+ ++ +  +     +        N
Sbjct: 22  DIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYN 78

Query: 113 LQKLNPLATSLYSFQLNLAENNLTGNIP-ESLENLTSLQILNLSCNHLGGSIPKPSGLFS 171
           L K+           + +        I  ++L+ L  L+ L +    L    P  + ++S
Sbjct: 79  LSKVT---------HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYS 128

Query: 172 T--LSSIDFAHNNFNGSLPLEV-GSLSN-TQELDFSEHMLSDEIPITLGNRSKFEHLLLG 227
           T     ++   N +  S+P+     L N T  L    +  +  +     N +K + + L 
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 228 GNMFQGRIPPFFGSFKGTI----DLNLSHNNLSGTIPKE-LETLPFLENLNL 274
            N +   I     +F G       L++S  +++  +P + LE L  L   N 
Sbjct: 188 KNKYLTVIDK--DAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 32/195 (16%)

Query: 13  LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGG 72
              L+   + +     + L P ++LT L+L    L       L     L   L  LD   
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----KLQVDGTL-PVLGTLDLSH 86

Query: 73  NQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIP---FSIGKLQNLQKLNPLATSLYSFQLN 129
           NQ    +P        L  L +  N L  S+P        L  LQ            +L 
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALR--GLGELQ------------ELY 130

Query: 130 LAENNLTGNIPESL-ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID--FAHNNFNGS 186
           L  N L   +P  L      L+ L+L+ N+L   +  P+GL + L ++D      N   +
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNL-TEL--PAGLLNGLENLDTLLLQENSLYT 186

Query: 187 LPLEVGSLSNTQELD 201
           +P             
Sbjct: 187 IPKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 60/247 (24%), Positives = 79/247 (31%), Gaps = 53/247 (21%)

Query: 34  TSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLG 93
            +    ++    NL  + PP      +L     IL    N       A +  Y  L QL 
Sbjct: 9   VASHLEVNCDKRNLTAL-PP------DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 94  LDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILN 153
           LDR  L        G L  L              L+L+ N L  ++P   + L +L +L+
Sbjct: 62  LDRAELTKLQVD--GTLPVLG------------TLDLSHNQLQ-SLPLLGQTLPALTVLD 106

Query: 154 LSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPI 213
           +S N L  S+  P G                         L   QEL    + L    P 
Sbjct: 107 VSFNRL-TSL--PLGALR---------------------GLGELQELYLKGNELKTLPPG 142

Query: 214 TLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI---DLNLSHNNLSGTIPKELETLPFLE 270
            L    K E L L  N     +P   G   G      L L  N+L  TIPK       L 
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 271 NLNLSFN 277
              L  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS 186
            L+L+EN L      +L   T L  LNL    L   +     L   L ++D +HN    S
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTL-PVLGTLDLSHNQLQ-S 91

Query: 187 LPLEVGSLSNTQELDFSEHMLSDEIPITLGNR-SKFEHLLLGGNMFQGRIPPFFGSFKGT 245
           LPL   +L     LD S + L+  +P+       + + L L GN  +  +PP  G    T
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPP--GLLTPT 147

Query: 246 I---DLNLSHNNLSGTIPKEL-ETLPFLENLNLSFNNFEGQLPSMS--VFTNTS 293
                L+L++NNL+  +P  L   L  L+ L L  N     L ++    F +  
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN----SLYTIPKGFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 38/155 (24%), Positives = 56/155 (36%), Gaps = 28/155 (18%)

Query: 8   GNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
           G L  L  L+  ++ +Q  +P        LT L +  N L   +P        L  +L+ 
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGA--LRGL-GELQE 128

Query: 68  LDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATS 122
           L   GN+    +P G+         L +L L  N L   +P  +   L+NL         
Sbjct: 129 LYLKGNELK-TLPPGL---LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD-------- 175

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCN 157
                L L EN+L   IP+       L    L  N
Sbjct: 176 ----TLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 49/272 (18%), Positives = 84/272 (30%), Gaps = 53/272 (19%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
           EIPS L        L      L  +I     +F+     L  ++   N     I A +  
Sbjct: 23  EIPSDLPRN--AIELRFVLTKLR-VIQK--GAFSGF-GDLEKIEISQNDVLEVIEADV-- 74

Query: 86  YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN 145
                              FS   L  L ++                NNL    PE+ +N
Sbjct: 75  -------------------FS--NLPKLHEI-----------RIEKANNLLYINPEAFQN 102

Query: 146 LTSLQILNLSCNHLGGSIPKPSGLFST-LSSIDFAHNNFNGSLPLEV--GSLSNTQELDF 202
           L +LQ L +S   +   +P    + S     +D   N    ++      G    +  L  
Sbjct: 103 LPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 203 SEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG---TIDLNLSHNNLSGTI 259
           +++ + +            E  L   N  +  +P     F G    + L++S   +    
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPN--DVFHGASGPVILDISRTRIHSLP 218

Query: 260 PKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
              LE L  L   +    N + +LP++     
Sbjct: 219 SYGLENLKKLRARST--YNLK-KLPTLEKLVA 247

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 32/174 (18%), Positives = 54/174 (31%), Gaps = 20/174 (11%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHL-SPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRI 67
           NL  LQ L   N+ ++  +P      + +   L +  N     I    +SF  LS +  I
Sbjct: 102 NLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVI 158

Query: 68  LDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQ 127
           L    N    +I         L +L L  N     +P  +                    
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDV--FHGASGPV---------I 206

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
           L+++   +       LENL  L+  +         +P    L + L      + 
Sbjct: 207 LDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLEKLVA-LMEASLTYP 256

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 7/152 (4%)

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS 186
            + LA  N+T ++   +E   +++ L ++  H   +   P    S L  +     +    
Sbjct: 48  YITLANINVT-DL-TGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSD 103

Query: 187 LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI 246
               +  L++   LD S     D I   +    K   + L  N     I P   +     
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELK 162

Query: 247 DLNLSHNNLSGTIPKELETLPFLENLNLSFNN 278
            LN+  + +       +E  P L  L      
Sbjct: 163 SLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 50/221 (22%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
                 N   G S+      + ++    LTY++L + N+  +    ++   N+    + L
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMN---SLTYITLANINVTDLTG--IEYAHNI----KDL 71

Query: 69  DAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQL 128
                                                +   +  L  L          +L
Sbjct: 72  TINNIHAT-----------------------------NYNPISGLSNLE---------RL 93

Query: 129 NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP 188
            +   ++T +   +L  LTSL +L++S +    SI         ++SID ++N     + 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 189 LEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGN 229
             + +L   + L+     + D     + +  K   L     
Sbjct: 154 -PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 9/175 (5%)

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS 186
           Q  L  +    NIP+S     +     L  +             ++L+ I  A+ N    
Sbjct: 5   QTGLKASQDNVNIPDS--TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDL 59

Query: 187 LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI 246
             +E     N ++L  +    ++  P  +   S  E L + G        P         
Sbjct: 60  TGIE--YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115

Query: 247 DLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNG 301
            L++SH+    +I  ++ TLP + +++LS+N     +  +        ++I  +G
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 43/155 (27%)

Query: 7   IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
           I  L  L+ L      V  +   +LS  + LT L +  +     I   +++       + 
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK----VN 139

Query: 67  ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF 126
            +D   N    DI                           +  L  L+            
Sbjct: 140 SIDLSYNGAITDIMP-------------------------LKTLPELKS----------- 163

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGG 161
            LN+  + +  +    +E+   L  L      +GG
Sbjct: 164 -LNIQFDGVH-DY-RGIEDFPKLNQLYAFSQTIGG 195

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 51/169 (30%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------------P 434
           ++  +GSL  +L+       + +   +K+A+                             
Sbjct: 120 DYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKS 175

Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY----------NMEWV 484
            N+L+  + T  + D GLA    +  T+ +    N     G+  Y          NM+  
Sbjct: 176 KNILVKKNGTCCIADLGLAVRHDSA-TDTIDIAPNHRV--GTKRYMAPEVLDDSINMK-H 231

Query: 485 ARYQHKGKGYSCGILLLEIMTGKRPTDEM------FADCLSLH-NFCEM 526
                +   Y+ G++  EI                + D +    +  EM
Sbjct: 232 FESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM 280

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 49/270 (18%), Positives = 95/270 (35%), Gaps = 34/270 (12%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
                   N    +V   +    +  + +  +   ++++      S+     L   +  L
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----SVQGIQYL-PNVTKL 73

Query: 69  DAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQL 128
              GN+   DI   +    NL  L LD N +       +  L++L+KL           L
Sbjct: 74  FLNGNKLT-DIK-PLANLKNLGWLFLDENKVK-----DLSSLKDLKKLK---------SL 117

Query: 129 NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP 188
           +L  N ++ +I   L +L  L+ L L  N +   I   S L + L ++    N  +  +P
Sbjct: 118 SLEHNGIS-DI-NGLVHLPQLESLYLGNNKI-TDITVLSRL-TKLDTLSLEDNQISDIVP 173

Query: 189 LEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL 248
           L    L+  Q L  S++ +SD     L      + L L       +      +      +
Sbjct: 174 LA--GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 249 NLSHNNLSGTIPKELETLPFLENLNLSFNN 278
             +  +L    P+ +      E  N+ ++ 
Sbjct: 230 KNTDGSL--VTPEIISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 32/249 (12%)

Query: 31  LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLI 90
               ++    +L   ++   +    +   +    +  + A  +     +  GI    N+ 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNS----IDQIIANNSDIK-SVQ-GIQYLPNVT 71

Query: 91  QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQ 150
           +L L+ N L       I  L NL+ L           L L EN +  ++  SL++L  L+
Sbjct: 72  KLFLNGNKLT-----DIKPLANLKNLG---------WLFLDENKVK-DL-SSLKDLKKLK 115

Query: 151 ILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDE 210
            L+L  N +   I     L   L S+   +N       L    L+    L   ++ +SD 
Sbjct: 116 SLSLEHNGI-SDINGLVHL-PQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDI 171

Query: 211 IPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLE 270
           +P  L   +K ++L L  N     +    G     + L L               L    
Sbjct: 172 VP--LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDV-LELFSQECLNKPINHQSNLVVPN 227

Query: 271 NLNLSFNNF 279
            +  +  + 
Sbjct: 228 TVKNTDGSL 236

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 45/166 (27%)

Query: 385 GSSMDSGGNDFK-ALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------- 433
            + +   G+  +  L  ++  NGSL  +L        LD    LK+A             
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSLYDYLKSTT----LDAKSMLKLAYSSVSGLCHLHTE 153

Query: 434 ----------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSI 477
                             N+L+  + T  + D GLA    ++ TN +    N+    G+ 
Sbjct: 154 IFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISD-TNEVDIPPNTRV--GTK 210

Query: 478 GYNM-----EWVARYQHKGKG-----YSCGILLLEIMTGKRPTDEM 513
            Y M     +      H         YS G++L E+         +
Sbjct: 211 RY-MPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIV 255

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 33/157 (21%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
           EIP++L  T  +T + L  N +  I PP   +F+    KLR +D   NQ + ++      
Sbjct: 25  EIPTNLPET--ITEIRLEQNTIKVI-PP--GAFSPY-KKLRRIDLSNNQIS-ELAPDA-- 75

Query: 86  YF----NLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP 140
            F    +L  L L  N +   +P S+   L +LQ             L L  N +   + 
Sbjct: 76  -FQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ------------LLLLNANKIN-CLR 120

Query: 141 E-SLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
             + ++L +L +L+L  N L  +I K  G FS L +I
Sbjct: 121 VDAFQDLHNLNLLSLYDNKL-QTIAK--GTFSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 23/135 (17%)

Query: 29  SHLSPT-----SKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI 83
             + P       KL  + L +N +  +  P  D+F  L   L  L   GN+   ++P  +
Sbjct: 45  KVIPPGAFSPYKKLRRIDLSNNQISEL-AP--DAFQGL-RSLNSLVLYGNKIT-ELPKSL 99

Query: 84  P-KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPES 142
               F+L  L L+ N +   +   +   Q+L  LN          L+L +N L      +
Sbjct: 100 FEGLFSLQLLLLNANKIN-CLR--VDAFQDLHNLN---------LLSLYDNKLQTIAKGT 147

Query: 143 LENLTSLQILNLSCN 157
              L ++Q ++L+ N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 36/155 (23%), Positives = 53/155 (34%), Gaps = 30/155 (19%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
            +P  L        L L  NNL  +   +  + T L T L  L    N     I +    
Sbjct: 32  NVPQSLPSY--TALLDLSHNNLSRL--RAEWTPTRL-TNLHSLLLSHNHLN-FISSEA-- 83

Query: 86  YF----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPE 141
            F    NL  L L  N L  ++   +    +LQ L           L L  N++   +  
Sbjct: 84  -FVPVPNLRYLDLSSNHLH-TLDEFL--FSDLQALE---------VLLLYNNHIV-VVDR 129

Query: 142 -SLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSS 175
            + E++  LQ L LS N +      P  L    + 
Sbjct: 130 NAFEDMAQLQKLYLSQNQI-SRF--PVELIKDGNK 161

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 46/213 (21%), Positives = 76/213 (35%), Gaps = 44/213 (20%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           EFM  G+L  +L      + +     L +A  I S                  N L+  +
Sbjct: 296 EFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGEN 354

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVARYQHKGKGYSCGIL 499
               V DFGL+R +  +      G +     W    S+ YN     ++  K   ++ G+L
Sbjct: 355 HLVKVADFGLSRLMTGDTYTAHAG-AKFPIKWTAPESLAYN-----KFSIKSDVWAFGVL 408

Query: 500 LLEIMT-GKRPTDEMFADCLSLHNFCE-------MALPESVMELVYSRLLQGVDKDAEDE 551
           L EI T G  P   +      L    E       M  PE   E VY  +      +  D 
Sbjct: 409 LWEIATYGMSPYPGI-----DLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDR 463

Query: 552 PCMKAKIRECLTSLGRIGIASLTETPNERMGVR 584
           P    +I +   ++     +S+++   + +G R
Sbjct: 464 PSFA-EIHQAFETM--FQESSISDEVEKELGKR 493

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 29/135 (21%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E+M  GSL  +L      + L L + + +A  I S                  N+L+  +
Sbjct: 258 EYMSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 316

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVARYQHKGKGYSCGIL 499
           +   V DFGLAR +  N     +  +     W    +  Y      R+  K   +S GIL
Sbjct: 317 LVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYG-----RFTIKSDVWSFGIL 370

Query: 500 LLEIMT-GKRPTDEM 513
           L E+ T G+ P   M
Sbjct: 371 LTELTTKGRVPYPGM 385

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 34/246 (13%)

Query: 80  PAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL-ATSLYSFQLNLAENNLTGN 138
                    L +  L        +   +   + LQ+L P     L +  L +   +    
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 139 IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQ 198
             E+L+  ++L+ ++                    + +D   + F     +     ++ +
Sbjct: 401 EKETLQYFSTLKAVD----------------PMRAAYLDDLRSKFLLENSVLKMEYADVR 444

Query: 199 ELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGT 258
            L  +   L+      L       HL L  N  +  +PP   + +    L  S N L   
Sbjct: 445 VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-N 500

Query: 259 IPKELETLPFLENLNLSFNNFEG--QLPSMSVFTNTSVISIVGN---------GKLCGGV 307
           +   +  LP L+ L L  N  +    +  +       ++++ GN          +L   +
Sbjct: 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

Query: 308 PELRLL 313
           P +  +
Sbjct: 560 PSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 27/204 (13%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           +  E+ +   LQ L   N      I   +     L Y          +   ++D      
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVDP----- 416

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
            +   LD   ++F  +      +Y ++  L L    L   +   + +L  +  L+     
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLD----- 469

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNN 182
                  L+ N L   +P +L  L  L++L  S N L  ++   + L   L  +   +N 
Sbjct: 470 -------LSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVDGVANLPR-LQELLLCNNR 519

Query: 183 FNGSLP--LEVGSLSNTQELDFSE 204
                     + S      L+   
Sbjct: 520 LQ-QSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 6e-08
 Identities = 43/281 (15%), Positives = 78/281 (27%), Gaps = 18/281 (6%)

Query: 33  PTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL 92
                 ++S     L       L   + + T L ++D          P G  +  ++   
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 93  GLDRNCLAGSIPFSIGK-----LQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLT 147
            L    L   +P    +       + ++   L      +  + A +        S+E  T
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362

Query: 148 SLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDF----- 202
            LQ    SC  L    P+ +        +     +        +   S  + +D      
Sbjct: 363 VLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 203 ---SEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTI 259
                     E  +     +    L L        +            L+LSHN L   +
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 260 PKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
           P  L  L  LE L  S N  E  +  ++       + +  N
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNN 518

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 29/131 (22%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E +  G   ++L       RL +   L++  D  +                  N L+   
Sbjct: 192 ELVQGGDFLTFLRTEG--ARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEK 249

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVARYQHKGKGYSCGIL 499
               + DFG++R     V     G       W    ++ Y      RY  +   +S GIL
Sbjct: 250 NVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYG-----RYSSESDVWSFGIL 304

Query: 500 LLEIMT-GKRP 509
           L E  + G  P
Sbjct: 305 LWETFSLGASP 315

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 29/135 (21%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E+M  GSL  +L      + L L + + +A  I S                  N+L+  +
Sbjct: 341 EYMSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN 399

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVARYQHKGKGYSCGIL 499
           +   V DFGLAR +  N     +  +     W    +  Y      R+  K   +S GIL
Sbjct: 400 LVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYG-----RFTIKSDVWSFGIL 453

Query: 500 LLEIMT-GKRPTDEM 513
           L E+ T G+ P   M
Sbjct: 454 LTELTTKGRVPYPGM 468

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 39/134 (29%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E+M  GSL  +L        L     LK ++D+                    NVL+  D
Sbjct: 267 EYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 325

Query: 443 MTAYVGDFGLARFLPTNVTN---PMKGQSNSAAVWG---SIGYNMEWVARYQHKGKGYSC 496
             A V DFGL +   +       P+K        W    ++        ++  K   +S 
Sbjct: 326 NVAKVSDFGLTKEASSTQDTGKLPVK--------WTAPEALREK-----KFSTKSDVWSF 372

Query: 497 GILLLEIMT-GKRP 509
           GILL EI + G+ P
Sbjct: 373 GILLWEIYSFGRVP 386

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 22/130 (16%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
            + P +++LD     ++  F                 S     +       E +  +   
Sbjct: 236 YLRPVDIVLDQRGGVFLTGFEHLVRDGA------SAVSPIGRGFAPPETTAERMLPFGQH 289

Query: 491 GKG--------YSCGILLLEIMTGKRP--TDEMFADCLSLHNFCEMALPESVMELVYSRL 540
                      ++ G+ +  I     P   D        +   C+  +P+ V  L+    
Sbjct: 290 HPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSEWIFRSCK-NIPQPVRALL-EGF 347

Query: 541 LQGVDKDAED 550
           L+      ED
Sbjct: 348 LR---YPKED 354

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 45/143 (31%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           + MP G L  ++  ++    +     L   V I                    NVL+   
Sbjct: 96  QLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTP 153

Query: 443 MTAYVGDFGLARFLPTN----VTN----PMKGQSNSAAVWG---SIGYNMEWVARYQHKG 491
               + DFGLA+ L              P+K        W    SI +       Y H+ 
Sbjct: 154 QHVKITDFGLAKLLGAEEKEYHAEGGKVPIK--------WMALESILHR-----IYTHQS 200

Query: 492 KGYSCGILLLEIMT-GKRPTDEM 513
             +S G+ + E+MT G +P D +
Sbjct: 201 DVWSYGVTVWELMTFGSKPYDGI 223

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 31/144 (21%), Positives = 45/144 (31%), Gaps = 46/144 (31%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E  P GSL   L  ++      L    + AV +                    N+LL   
Sbjct: 100 ELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATR 157

Query: 443 MTAYVGDFGLARFLPTNVTN---------PMKGQSNSAAVWG---SIGYNMEWVARYQHK 490
               +GDFGL R LP N  +         P          W    S+         + H 
Sbjct: 158 DLVKIGDFGLMRALPQNDDHYVMQEHRKVPFA--------WCAPESLKTR-----TFSHA 204

Query: 491 GKGYSCGILLLEIMT-GKRPTDEM 513
              +  G+ L E+ T G+ P   +
Sbjct: 205 SDTWMFGVTLWEMFTYGQEPWIGL 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 48/253 (18%), Positives = 87/253 (34%), Gaps = 35/253 (13%)

Query: 7   IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLR 66
              L      N G  +V   +       S +   +  ++N+  +    +  FTNL    +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNL----K 66

Query: 67  ILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF 126
            L    NQ + D+   +     L +L ++RN         +  L  +             
Sbjct: 67  ELHLSHNQIS-DLS-PLKDLTKLEELSVNRN--------RLKNLNGIPSACLS------- 109

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS 186
           +L L  N L     +SL +L +L+IL++  N L  SI     L S L  +D   N    +
Sbjct: 110 RLFLDNNELRD--TDSLIHLKNLEILSIRNNKL-KSIVMLGFL-SKLEVLDLHGNEITNT 165

Query: 187 LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT- 245
             L    L     +D +     +E    +  + +        +     I P++ S  G+ 
Sbjct: 166 GGLT--RLKKVNWIDLTGQKCVNE---PVKYQPELYITNTVKDPDGRWISPYYISNGGSY 220

Query: 246 IDLNLSHNNLSGT 258
           +D  +       T
Sbjct: 221 VDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 129 NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP 188
           ++        +      L +    NL    +  +        S + + +  ++N      
Sbjct: 2   SIQRPTPINQV-FPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG 58

Query: 189 LEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL 248
           ++    +N +EL  S + +SD  P  L + +K E L +  N  +  +            L
Sbjct: 59  MQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGI--PSACLSRL 111

Query: 249 NLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
            L +N L  T    L  L  LE L++  N  +  +  +   +   V+ + GN
Sbjct: 112 FLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGN 160

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 24/114 (21%)

Query: 412 LHPNEATRRL-DLAEGLKIA-----V--DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTN 462
           + P  A   + D  + L  +     +  D+ P+N+++       V DFG+AR +  +  N
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAI-ADSGN 171

Query: 463 PMKGQSNSAAVWGSIGYNMEWVARYQHKGKG-------YSCGILLLEIMTGKRP 509
            +   + +AAV G+  Y    ++  Q +G         YS G +L E++TG+ P
Sbjct: 172 SV---TQTAAVIGTAQY----LSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 30/137 (21%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E+M NGSL+++L  ++   +  + + + +   + +                  NVL+D 
Sbjct: 129 TEYMENGSLDTFLRTHD--GQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDS 186

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WG---SIGYNMEWVARYQHKGKGYSCG 497
           ++   V DFGL+R L  +             + W    +I +       +      +S G
Sbjct: 187 NLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFR-----TFSSASDVWSFG 241

Query: 498 ILLLEIMT-GKRPTDEM 513
           +++ E++  G+RP   M
Sbjct: 242 VVMWEVLAYGERPYWNM 258

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 30/137 (21%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E+M NGSL+S+L  ++   +  + + + +   I S                  N+L++ 
Sbjct: 125 TEYMENGSLDSFLRKHD--AQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV-WG---SIGYNMEWVARYQHKGKGYSCG 497
           ++   V DFGL R L  +       +     + W    +I Y      ++      +S G
Sbjct: 183 NLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR-----KFTSASDVWSYG 237

Query: 498 ILLLEIMT-GKRPTDEM 513
           I+L E+M+ G+RP  EM
Sbjct: 238 IVLWEVMSYGERPYWEM 254

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 44/143 (30%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            EFM +G L  +L              L + +D+                    N L+  
Sbjct: 82  TEFMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGE 139

Query: 442 DMTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWG---SIGYNMEWVARYQHKG 491
           +    V DFG+ RF+  +          P+K        W       ++     RY  K 
Sbjct: 140 NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVK--------WASPEVFSFS-----RYSSKS 186

Query: 492 KGYSCGILLLEIMT-GKRPTDEM 513
             +S G+L+ E+ + GK P +  
Sbjct: 187 DVWSFGVLMWEVFSEGKIPYENR 209

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 46/145 (31%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E+M NG+L+ +L   +      + + + +   I +                  N+L++ 
Sbjct: 125 TEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNS 182

Query: 442 DMTAYVGDFGLARFLPTNVTN---------PMKGQSNSAAVWG---SIGYNMEWVARYQH 489
           ++   V DFGL+R L  +            P++        W    +I Y      ++  
Sbjct: 183 NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIR--------WTAPEAISYR-----KFTS 229

Query: 490 KGKGYSCGILLLEIMT-GKRPTDEM 513
               +S GI++ E+MT G+RP  E+
Sbjct: 230 ASDVWSFGIVMWEVMTYGERPYWEL 254

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 43/138 (31%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           EFM  G+L  +L      + +     L +A  I S                  N L+  +
Sbjct: 89  EFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGEN 147

Query: 443 MTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWG---SIGYNMEWVARYQHKGK 492
               V DFGL+R +  +          P+K        W    S+ YN     ++  K  
Sbjct: 148 HLVKVADFGLSRLMTGDTYTAHAGAKFPIK--------WTAPESLAYN-----KFSIKSD 194

Query: 493 GYSCGILLLEIMT-GKRP 509
            ++ G+LL EI T G  P
Sbjct: 195 VWAFGVLLWEIATYGMSP 212

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 43/138 (31%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E+M NGSL  +L       +L + + L +A  I                    N+L+   
Sbjct: 87  EYMENGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDT 145

Query: 443 MTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWG---SIGYNMEWVARYQHKGK 492
           ++  + DFGLAR +  N          P+K        W    +I Y       +  K  
Sbjct: 146 LSCKIADFGLARLIEDNEYTAREGAKFPIK--------WTAPEAINYG-----TFTIKSD 192

Query: 493 GYSCGILLLEIMT-GKRP 509
            +S GILL EI+T G+ P
Sbjct: 193 VWSFGILLTEIVTHGRIP 210

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 44/143 (30%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E+M NG L ++L       R    + L++  D+                    N L++ 
Sbjct: 98  TEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVND 155

Query: 442 DMTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWG---SIGYNMEWVARYQHKG 491
                V DFGL+R++  +          P++        W     + Y+     ++  K 
Sbjct: 156 QGVVKVSDFGLSRYVLDDEYTSSVGSKFPVR--------WSPPEVLMYS-----KFSSKS 202

Query: 492 KGYSCGILLLEIMT-GKRPTDEM 513
             ++ G+L+ EI + GK P +  
Sbjct: 203 DIWAFGVLMWEIYSLGKMPYERF 225

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 44/142 (30%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E    G L S+L   +    LDLA  +  A  + +                  NVL+  +
Sbjct: 95  ELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSN 152

Query: 443 MTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWG---SIGYNMEWVARYQHKGK 492
               +GDFGL+R++  +          P+K        W    SI +      R+     
Sbjct: 153 DCVKLGDFGLSRYMEDSTYYKASKGKLPIK--------WMAPESINFR-----RFTSASD 199

Query: 493 GYSCGILLLEIMT-GKRPTDEM 513
            +  G+ + EI+  G +P   +
Sbjct: 200 VWMFGVCMWEILMHGVKPFQGV 221

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 29/135 (21%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           +++P GSL   +  +     L     L   V I                    NVLL   
Sbjct: 94  QYLPLGSLLDHVRQHR--GALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSP 151

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVARYQHKGKGYSCGIL 499
               V DFG+A  LP +    +  ++ +   W    SI +      +Y H+   +S G+ 
Sbjct: 152 SQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFG-----KYTHQSDVWSYGVT 206

Query: 500 LLEIMT-GKRPTDEM 513
           + E+MT G  P   +
Sbjct: 207 VWELMTFGAEPYAGL 221

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 26/114 (22%)

Query: 412 LHPNEATRRL-DLAEGLKIA-----V--DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTN 462
           L  + A      + +G+K A     V  DI P N+L+D + T  + DFG+A+ L      
Sbjct: 108 LSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET--- 164

Query: 463 PMKGQSNSAAVWGSIGYNMEWVARYQHKGKG-------YSCGILLLEIMTGKRP 509
                + +  V G++ Y     +  Q KG+        YS GI+L E++ G+ P
Sbjct: 165 ---SLTQTNHVLGTVQY----FSPEQAKGEATDECTDIYSIGIVLYEMLVGEPP 211

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 39/134 (29%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E+M  GSL  +L        L     LK ++D+                    NVL+  D
Sbjct: 95  EYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 153

Query: 443 MTAYVGDFGLARFLPTNVTN---PMKGQSNSAAVWG---SIGYNMEWVARYQHKGKGYSC 496
             A V DFGL +   +       P+K        W    ++        ++  K   +S 
Sbjct: 154 NVAKVSDFGLTKEASSTQDTGKLPVK--------WTAPEALREK-----KFSTKSDVWSF 200

Query: 497 GILLLEIMT-GKRP 509
           GILL EI + G+ P
Sbjct: 201 GILLWEIYSFGRVP 214

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 29/135 (21%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           EFM  GSL  +L  +E   +  L + +  +  I                    N+L+   
Sbjct: 262 EFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSAS 320

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVARYQHKGKGYSCGIL 499
           +   + DFGLAR +  N     +G +     W    +I +       +  K   +S GIL
Sbjct: 321 LVCKIADFGLARVIEDNEYTAREG-AKFPIKWTAPEAINFG-----SFTIKSDVWSFGIL 374

Query: 500 LLEIMT-GKRPTDEM 513
           L+EI+T G+ P   M
Sbjct: 375 LMEIVTYGRIPYPGM 389

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 47/145 (32%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E    G L  +L  N   R +     +++   +                    NVLL  
Sbjct: 96  MEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 152

Query: 442 DMTAYVGDFGLARFLPTNVTN---------PMKGQSNSAAVWG---SIGYNMEWVARYQH 489
              A + DFGL++ L  +            P+K        W     I Y      ++  
Sbjct: 153 QHYAKISDFGLSKALRADENYYKAQTHGKWPVK--------WYAPECINYY-----KFSS 199

Query: 490 KGKGYSCGILLLEIMT-GKRPTDEM 513
           K   +S G+L+ E  + G++P   M
Sbjct: 200 KSDVWSFGVLMWEAFSYGQKPYRGM 224

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 56/302 (18%), Positives = 98/302 (32%), Gaps = 44/302 (14%)

Query: 12  RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSL-DSFTNLSTKLRILDA 70
           RL +     +  + +I S L     L  L+L SN L  +    +       S K++ L  
Sbjct: 34  RLDDCGLTEARCK-DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 92

Query: 71  GGNQF----AGDIPAGIPKYFNLIQLGLDRNCL--AGSIPFSIGKLQNLQKLNPLATSLY 124
                     G + + +     L +L L  N L  AG      G L    +L        
Sbjct: 93  QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE------- 145

Query: 125 SFQLNLAENNLT----GNIPESLENLTSLQILNLSCNHLGGSIPKP--SGLFS---TLSS 175
             +L L   +L+      +   L      + L +S N +  +  +    GL      L +
Sbjct: 146 --KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 176 IDFAHNNFN----GSLPLEVGSLSNTQELDFSEHMLSDE-----IPITLGNRSKFEHLLL 226
           +              L   V S ++ +EL    + L D       P  L   S+   L +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 227 GGNMFQGR----IPPFFGSFKGTIDLNLSHNNLSGTIPKEL-----ETLPFLENLNLSFN 277
                  +    +     + +   +L+L+ N L     + L     E    LE+L +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 278 NF 279
           +F
Sbjct: 324 SF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 53/300 (17%), Positives = 89/300 (29%), Gaps = 62/300 (20%)

Query: 12  RLQNLNFGNSTVQGE----IPSHLSPTSKLTYLSLFSNNLHGIIPPSL-DSFTNLSTKLR 66
           RL+ L     ++       + S L        L++ +N+++      L     +   +L 
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 67  ILDAGGNQF----AGDIPAGIPKYFNLIQLGLDRNCL--AGSIPFSIGKLQNLQKLNPLA 120
            L             D+   +    +L +L L  N L   G      G L    +L    
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR--- 259

Query: 121 TSLYSFQLNLAENNLT----GNIPESLENLTSLQILNLSCNHLGGS--------IPKPSG 168
                  L + E  +T    G++   L    SL+ L+L+ N LG          + +P  
Sbjct: 260 ------TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG- 312

Query: 169 LFSTLSSIDFAHNNF--NGSLPLEVGSLSNT--QELDFSEHMLSDEIPITLGNRSKFEHL 224
               L S+     +F              N    EL  S + L D     L         
Sbjct: 313 --CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 225 LLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLS----GTIPKELETLPFLENLNLSFNNFE 280
           +L                     L L+  ++S     ++   L     L  L+LS N   
Sbjct: 371 VL-------------------RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 46/271 (16%), Positives = 81/271 (29%), Gaps = 55/271 (20%)

Query: 61  LSTKLRILDAGGNQF-AGDIPAGIPKYFNLIQLGLDRNCL----AGSIPFSIGKLQNLQK 115
           +S  ++ LD    +         +P       + LD   L       I  ++     L +
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 116 LN------------PLATSLYSFQ-----LNLAENNLT----GNIPESLENLTSLQILNL 154
           LN             +   L +       L+L    LT    G +  +L  L +LQ L+L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 155 SCNHLGGS--------IPKPSGLFSTLSSIDFAHNNFN----GSLPLEVGSLSNTQELDF 202
           S N LG +        +  P      L  +   + + +      L   + +  + +EL  
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQ---CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 203 SEHMLSDEIPITLG-----NRSKFEHLLLGGNMFQGR----IPPFFGSFKGTIDLNLSHN 253
           S + +++     L      +  + E L L            +     S     +L L  N
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 254 NLSGTIPKEL-----ETLPFLENLNLSFNNF 279
            L      EL          L  L +     
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 29/159 (18%)

Query: 34  TSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQL 92
              + YL+L  N LH      + +   L T L  L   GNQ    +P G+     NL +L
Sbjct: 62  LPNVRYLALGGNKLH-----DISALKEL-TNLTYLILTGNQLQS-LPNGVFDKLTNLKEL 114

Query: 93  GLDRNCLAGSIPFSI-GKLQNLQKL----NPLATSLYS--F-------QLNLAENNLTGN 138
            L  N L  S+P  +  KL NL  L    N L  SL    F       +L+L+ N L  +
Sbjct: 115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQ-S 171

Query: 139 IPESL-ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
           +PE + + LT L+ L L  N L  S+P   G+F  L+S+
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQL-KSVPD--GVFDRLTSL 207

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 44/143 (30%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E  P G L  +L  N+    L +   +  ++ I                    N+L+  
Sbjct: 91  MELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVAS 148

Query: 442 DMTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWG---SIGYNMEWVARYQHKG 491
                +GDFGL+R++             P+K        W    SI +      R+    
Sbjct: 149 PECVKLGDFGLSRYIEDEDYYKASVTRLPIK--------WMSPESINFR-----RFTTAS 195

Query: 492 KGYSCGILLLEIMT-GKRPTDEM 513
             +   + + EI++ GK+P   +
Sbjct: 196 DVWMFAVCMWEILSFGKQPFFWL 218

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 44/142 (30%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E++ NG L ++L  +   + L+ ++ L++  D+                    N L+D D
Sbjct: 83  EYISNGCLLNYLRSHG--KGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRD 140

Query: 443 MTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWG---SIGYNMEWVARYQHKGK 492
           +   V DFG+ R++  +          P+K        W       Y      +Y  K  
Sbjct: 141 LCVKVSDFGMTRYVLDDQYVSSVGTKFPVK--------WSAPEVFHYF-----KYSSKSD 187

Query: 493 GYSCGILLLEIMT-GKRPTDEM 513
            ++ GIL+ E+ + GK P D  
Sbjct: 188 VWAFGILMWEVFSLGKMPYDLY 209

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 46/144 (31%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E    G L  +L        + ++   ++   +                    NVLL   
Sbjct: 89  EMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNR 146

Query: 443 MTAYVGDFGLARFLPTNVTN---------PMKGQSNSAAVWG---SIGYNMEWVARYQHK 490
             A + DFGL++ L  + +          P+K        W     I +      ++  +
Sbjct: 147 HYAKISDFGLSKALGADDSYYTARSAGKWPLK--------WYAPECINFR-----KFSSR 193

Query: 491 GKGYSCGILLLEIMT-GKRPTDEM 513
              +S G+ + E ++ G++P  +M
Sbjct: 194 SDVWSYGVTMWEALSYGQKPYKKM 217

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 35/136 (25%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
             +M +G L +++          + + +   + +                    N +LD 
Sbjct: 106 LPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDE 163

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV----WG---SIGYNMEWVARYQHKGKGY 494
             T  V DFGLAR +           + + A     W    S+        ++  K   +
Sbjct: 164 KFTVKVADFGLARDMYDK--EYYSVHNKTGAKLPVKWMALESLQTQ-----KFTTKSDVW 216

Query: 495 SCGILLLEIMT-GKRP 509
           S G+LL E+MT G  P
Sbjct: 217 SFGVLLWELMTRGAPP 232

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 45/143 (31%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           + MP G L  ++  ++    +     L   V I                    NVL+   
Sbjct: 96  QLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTP 153

Query: 443 MTAYVGDFGLARFLPTN----VTN----PMKGQSNSAAVWG---SIGYNMEWVARYQHKG 491
               + DFGLA+ L              P+K        W    SI +       Y H+ 
Sbjct: 154 QHVKITDFGLAKLLGAEEKEYHAEGGKVPIK--------WMALESILHR-----IYTHQS 200

Query: 492 KGYSCGILLLEIMT-GKRPTDEM 513
             +S G+ + E+MT G +P D +
Sbjct: 201 DVWSYGVTVWELMTFGSKPYDGI 223

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 48/171 (28%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLL 439
           L  E++P+G L  +L  + A  RLD +  L  +  I                    N+L+
Sbjct: 103 LVMEYLPSGCLRDFLQRHRA--RLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILV 160

Query: 440 DYDMTAYVGDFGLARFLPTN-----VTN----PMKGQSNSAAVWG---SIGYNMEWVARY 487
           + +    + DFGLA+ LP +     V      P+         W    S+  N      +
Sbjct: 161 ESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIF--------WYAPESLSDN-----IF 207

Query: 488 QHKGKGYSCGILLLEIMT-GKRP-TDEMFADCLSLHNFCEMALPESVMELV 536
             +   +S G++L E+ T   +  +       +        AL   ++EL+
Sbjct: 208 SRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSR-LLELL 257

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 28/115 (24%)

Query: 412 LHPNEATRRL-DLAEGLKIA-----V--DI-PSNVLLDYDMTAYVGDFGLARFLP-TNVT 461
           L P  A   +  +   L  A        D+ P N+L+  D  AY+ DFG+A       +T
Sbjct: 131 LAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLT 190

Query: 462 NPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG-------YSCGILLLEIMTGKRP 509
                Q  +    G++ Y    +A  +            Y+   +L E +TG  P
Sbjct: 191 -----QLGN--TVGTLYY----MAPERFSESHATYRADIYALTCVLYECLTGSPP 234

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 37/164 (22%)

Query: 2   NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
           ++PQ    L RL N    N     E         +L  ++  +N +  I   + +  + +
Sbjct: 29  HIPQYTAEL-RLNN----NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYF----NLIQLGLDRNCLAGSIP---FSIGKLQNLQ 114
                 +    N+   ++   +   F    +L  L L  N +   +    F    L +++
Sbjct: 84  ----NEILLTSNRLE-NVQHKM---FKGLESLKTLMLRSNRIT-CVGNDSFI--GLSSVR 132

Query: 115 KLNPLATSLYSFQLNLAENNLTGNIPE-SLENLTSLQILNLSCN 157
                        L+L +N +T  +   + + L SL  LNL  N
Sbjct: 133 ------------LLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 48/166 (28%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
           +IP H+        L L +N    +   +   F  L  +LR ++   N+   DI  G   
Sbjct: 25  KIPEHIPQY--TAELRLNNNEFTVL--EATGIFKKL-PQLRKINFSNNKIT-DIEEGA-- 76

Query: 86  YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL-E 144
            F                         + ++             L  N L  N+   + +
Sbjct: 77  -FE--------------------GASGVNEIL------------LTSNRLE-NVQHKMFK 102

Query: 145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID--FAHNNFNGSLP 188
            L SL+ L L  N +   +      F  LSS+     ++N   ++ 
Sbjct: 103 GLESLKTLMLRSNRI-TCVGN--DSFIGLSSVRLLSLYDNQITTVA 145

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 27/174 (15%)

Query: 14  QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGN 73
           + L+  ++ +     +     +KLT+L+L  N L   +   +  F +L T+L  L    N
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGV--FDDL-TELGTLGLANN 93

Query: 74  QFAGDIPAGIP-KYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSFQLNLA 131
           Q A  +P G+      L +L L  N L  S+P  +  +L  L+            +L L 
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK------------ELRLN 139

Query: 132 ENNLTGNIPESL-ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFA--HNN 182
            N L  +IP    + LT+LQ L+LS N L  S+P   G F  L  +       N
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQL-QSVPH--GAFDRLGKLQTITLFGN 189

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 51.9 bits (124), Expect = 5e-07
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 46/144 (31%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E    G L  +L        + ++   ++   +                    NVLL   
Sbjct: 415 EMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNR 472

Query: 443 MTAYVGDFGLARFLPTN----VTN-----PMKGQSNSAAVWG---SIGYNMEWVARYQHK 490
             A + DFGL++ L  +            P+K        W     I +      ++  +
Sbjct: 473 HYAKISDFGLSKALGADDSYYTARSAGKWPLK--------WYAPECINFR-----KFSSR 519

Query: 491 GKGYSCGILLLEIMT-GKRPTDEM 513
              +S G+ + E ++ G++P  +M
Sbjct: 520 SDVWSYGVTMWEALSYGQKPYKKM 543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 41/139 (29%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
             +M +G L +++          + + +   + +                    N +LD 
Sbjct: 170 LPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDE 227

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG----------SIGYNMEWVARYQHKG 491
             T  V DFGLAR +     + +  ++                 S+        ++  K 
Sbjct: 228 KFTVKVADFGLARDMYDKEFDSVHNKTG-----AKLPVKWMALESLQTQ-----KFTTKS 277

Query: 492 KGYSCGILLLEIMT-GKRP 509
             +S G+LL E+MT G  P
Sbjct: 278 DVWSFGVLLWELMTRGAPP 296

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 30/135 (22%)

Query: 400 FEFMPNGSLESWL---HPNEATRRLDLAEGLKIAVDIPS------------------NVL 438
             FM +G L ++L      E    L L   ++  VDI                    N +
Sbjct: 110 LPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCM 169

Query: 439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVW---GSIGYNMEWVARYQHKGKGYS 495
           L  DMT  V DFGL+R + +         S     W    S+  N      Y      ++
Sbjct: 170 LAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADN-----LYTVHSDVWA 224

Query: 496 CGILLLEIMT-GKRP 509
            G+ + EIMT G+ P
Sbjct: 225 FGVTMWEIMTRGQTP 239

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 48/169 (28%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            EF+P+GSL+ +L  N+   +++L + LK AV I                    NVL++ 
Sbjct: 104 MEFLPSGSLKEYLPKNKN--KINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVES 161

Query: 442 DMTAYVGDFGLARFLPTN-----VTN----PMKGQSNSAAVWG---SIGYNMEWVARYQH 489
           +    +GDFGL + + T+     V +    P+         W     +  +     ++  
Sbjct: 162 EHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVF--------WYAPECLMQS-----KFYI 208

Query: 490 KGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNF-CEMALPESVMELV 536
               +S G+ L E++T     +  M      +     +M +   ++  +
Sbjct: 209 ASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTR-LVNTL 256

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 33/136 (24%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQH 489
            + P +++LD     ++  F         V +             S G+   E  AR   
Sbjct: 231 YLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSS-----------VSRGFEPPELEARRAT 279

Query: 490 KGKG-------------YSCGILLLEIMTGKRP--TDEMFADCLSLHNFCEMALPESVME 534
                            ++ G+++  I     P   D        +   C+  +P+ V  
Sbjct: 280 ISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIFRSCK-NIPQPVRA 338

Query: 535 LVYSRLLQGVDKDAED 550
           L+    L+      ED
Sbjct: 339 LL-EGFLR---YPKED 350

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 33/143 (23%), Positives = 47/143 (32%), Gaps = 46/143 (32%)

Query: 400 FEFMPNGSLESWL---HPNEATRRLDLAEGLKIAVDIPS------------------NVL 438
             FM  G L ++L         + + L   LK  VDI                    N +
Sbjct: 120 LPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCM 179

Query: 439 LDYDMTAYVGDFGLARFL--------PTNVTNPMKGQSNSAAVW---GSIGYNMEWVARY 487
           L  DMT  V DFGL++ +              P+K        W    S+         Y
Sbjct: 180 LRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVK--------WIAIESLADR-----VY 226

Query: 488 QHKGKGYSCGILLLEIMT-GKRP 509
             K   ++ G+ + EI T G  P
Sbjct: 227 TSKSDVWAFGVTMWEIATRGMTP 249

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 16/131 (12%), Positives = 29/131 (22%), Gaps = 31/131 (23%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
              P N+ +  D    +GD      + T             A    + Y           
Sbjct: 219 HFTPDNLFIMPDGRLMLGDVSALWKVGTRGP----------ASSVPVTYAPREFLNASTA 268

Query: 491 GKG-----YSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA--------------LPES 531
                   +  G+ +  +     P   +            +               LP+ 
Sbjct: 269 TFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDF 328

Query: 532 VMELVYSRLLQ 542
           V  L+  R L 
Sbjct: 329 VKTLI-GRFLN 338

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 45/136 (33%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E++P GSL  +L  ++   R+D  + L+    I                    N+L++ 
Sbjct: 92  MEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVEN 149

Query: 442 DMTAYVGDFGLARFLPTN-----VTN----PMKGQSNSAAVWG---SIGYNMEWVARYQH 489
           +    +GDFGL + LP +     V      P+         W    S+  +     ++  
Sbjct: 150 ENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIF--------WYAPESLTES-----KFSV 196

Query: 490 KGKGYSCGILLLEIMT 505
               +S G++L E+ T
Sbjct: 197 ASDVWSFGVVLYELFT 212

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 41/139 (29%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
             +M +G L  ++   +  R   + + +   + +                    N +LD 
Sbjct: 102 LPYMCHGDLLQFIRSPQ--RNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDE 159

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG----------SIGYNMEWVARYQHKG 491
             T  V DFGLAR +       ++   +                S+        R+  K 
Sbjct: 160 SFTVKVADFGLARDILDREYYSVQQHRH-----ARLPVKWTALESLQTY-----RFTTKS 209

Query: 492 KGYSCGILLLEIMT-GKRP 509
             +S G+LL E++T G  P
Sbjct: 210 DVWSFGVLLWELLTRGAPP 228

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 45/136 (33%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E++P GSL  +L  ++   R+D  + L+    I                    N+L++ 
Sbjct: 123 MEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVEN 180

Query: 442 DMTAYVGDFGLARFLPTNVTN---------PMKGQSNSAAVWG---SIGYNMEWVARYQH 489
           +    +GDFGL + LP +            P+         W    S+  +     ++  
Sbjct: 181 ENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIF--------WYAPESLTES-----KFSV 227

Query: 490 KGKGYSCGILLLEIMT 505
               +S G++L E+ T
Sbjct: 228 ASDVWSFGVVLYELFT 243

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 44/138 (31%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDYD 442
           E    G L S+L   +    LDLA  +  A  + +                  NVL+  +
Sbjct: 470 ELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSN 527

Query: 443 MTAYVGDFGLARFLPTNVTN-------PMKGQSNSAAVWG---SIGYNMEWVARYQHKGK 492
               +GDFGL+R++  +          P+K        W    SI +      R+     
Sbjct: 528 DCVKLGDFGLSRYMEDSTYYKASKGKLPIK--------WMAPESINFR-----RFTSASD 574

Query: 493 GYSCGILLLEIMT-GKRP 509
            +  G+ + EI+  G +P
Sbjct: 575 VWMFGVCMWEILMHGVKP 592

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 53/152 (34%)

Query: 398 LAFEFMPNGSLESWL-------------HPNEATRRLDLAEGLKIAVDIPS--------- 435
           LA E+ P+G+L  +L               N     L   + L  A D+           
Sbjct: 103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ 162

Query: 436 ---------NVLLDYDMTAYVGDFGLARFLPTNVTN-----PMKGQSNSAAVWG---SIG 478
                    N+L+  +  A + DFGL+R     V       P++        W    S+ 
Sbjct: 163 FIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVR--------WMAIESLN 214

Query: 479 YNMEWVARYQHKGKGYSCGILLLEIMT-GKRP 509
           Y+      Y      +S G+LL EI++ G  P
Sbjct: 215 YS-----VYTTNSDVWSYGVLLWEIVSLGGTP 241

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 32/139 (23%), Positives = 46/139 (33%), Gaps = 34/139 (24%)

Query: 400 FEFMPNGSLESWL----HPNEATRRLDLAEGLKIAVDIPS------------------NV 437
            E M  G L+S+L            L + + L +A DI                    N 
Sbjct: 112 MELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNC 171

Query: 438 LLDY---DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVARYQHKG 491
           LL        A +GDFG+AR +         G +     W    +          +  K 
Sbjct: 172 LLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEG-----IFTSKT 226

Query: 492 KGYSCGILLLEIMT-GKRP 509
             +S G+LL EI + G  P
Sbjct: 227 DTWSFGVLLWEIFSLGYMP 245

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 36/169 (21%), Positives = 57/169 (33%), Gaps = 50/169 (29%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            E++P GSL  +L        + LA+ L  A  I                    NVLLD 
Sbjct: 114 MEYVPLGSLRDYLP----RHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDN 169

Query: 442 DMTAYVGDFGLARFLPTN-----VTN----PMKGQSNSAAVWG---SIGYNMEWVARYQH 489
           D    +GDFGLA+ +P       V      P+         W     +        ++ +
Sbjct: 170 DRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVF--------WYAPECLKEY-----KFYY 216

Query: 490 KGKGYSCGILLLEIMT-GKRPTDEMFA-DCLSLHNFCEMALPESVMELV 536
               +S G+ L E++T              L      +M +   + EL+
Sbjct: 217 ASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLR-LTELL 264

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 89/609 (14%), Positives = 160/609 (26%), Gaps = 220/609 (36%)

Query: 14  QNLNFGNSTVQGE--IPSHLSPTSKLTYLSLFSNNLHGIIP---PSLDSFTNLSTKLRIL 68
            N  F  S ++ E   PS +     +       N+           L  +  L   L  L
Sbjct: 89  INYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 69  DAGGNQFA-GDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQN--LQKLNPLATSLYS 125
               N    G    G  K             +A  +        +  +Q           
Sbjct: 148 RPAKNVLIDGV--LGSGK-----------TWVALDV------CLSYKVQCKMDFKI---- 184

Query: 126 FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID--FAHNNF 183
           F LNL   N    + E L+ L   QI     +    S      + S  + +        +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 184 NGSLPL---EVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG 240
              L L    V +       + S  +L     +T   +   + L                
Sbjct: 244 ENCL-LVLLNVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFL---------------- 281

Query: 241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
           S   T  ++L H++++ T P E+++L  L+ L+         LP                
Sbjct: 282 SAATTTHISLDHHSMTLT-PDEVKSL-LLKYLDCRP----QDLPR--------------- 320

Query: 301 GKLCGGVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGCLFDILIMLSVGVFQKRKPRR 360
            ++    P       +I         +   I    + W                      
Sbjct: 321 -EVLTTNP----RRLSI---------IAESIRDGLATW---------------------- 344

Query: 361 PSLRSSLGEEFLRIPYDELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRR 420
                   + +  +  D+L        ++S                SL   L P E  R+
Sbjct: 345 --------DNWKHVNCDKLTTI-----IES----------------SLNV-LEPAE-YRK 373

Query: 421 L--DLA---EGLKIAVDIPSNVL--LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV 473
           +   L+           IP+ +L  + +D+                V N +   S     
Sbjct: 374 MFDRLSVFPPS----AHIPTILLSLIWFDVIKSD---------VMVVVNKLHKYS----- 415

Query: 474 WGSIGYNMEWVARYQHKGKGYSCGI--LLLEIMTGKRPTDEMFADCLSLHN--------- 522
                     V +     K  +  I  + LE+   K   +  +A    LH          
Sbjct: 416 ---------LVEKQP---KESTISIPSIYLEL---KVKLENEYA----LHRSIVDHYNIP 456

Query: 523 --FC-EMALPESVMELVYSRL---LQGVDKDAEDEPC---------MKAKIRECLTSLGR 567
             F  +  +P  + +  YS +   L+ ++                 ++ KIR    S   
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH--DSTAW 514

Query: 568 IGIASLTET 576
               S+  T
Sbjct: 515 NASGSILNT 523

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 32/139 (23%), Positives = 46/139 (33%), Gaps = 34/139 (24%)

Query: 400 FEFMPNGSLESWL----HPNEATRRLDLAEGLKIAVDIPS------------------NV 437
            E M  G L+S+L            L + + L +A DI                    N 
Sbjct: 153 LELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNC 212

Query: 438 LLDY---DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVW---GSIGYNMEWVARYQHKG 491
           LL        A +GDFG+AR +         G +     W    +          +  K 
Sbjct: 213 LLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEG-----IFTSKT 267

Query: 492 KGYSCGILLLEIMT-GKRP 509
             +S G+LL EI + G  P
Sbjct: 268 DTWSFGVLLWEIFSLGYMP 286

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD 442
           +     +L+ W++   +    +    L I + I                  PSN+    D
Sbjct: 141 QLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMD 200

Query: 443 MTAYVGDFGLARFL--PTNVTNPMKGQSNSAAVWGSIG--YNM--EWVARYQHKGKGY-- 494
               VGDFGL   +         +      A   G +G    M  E     Q  G  Y  
Sbjct: 201 DVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPE-----QIHGNNYSH 255

Query: 495 -----SCGILLLEIMTGKRPTDEM 513
                S G++L E++       E 
Sbjct: 256 KVDIFSLGLILFELLYSFSTQMER 279

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 50/301 (16%), Positives = 92/301 (30%), Gaps = 53/301 (17%)

Query: 13  LQNLNFGNSTVQGE----IPSHLSPTSKLTYLSL---FSNNLHGIIPPSLDSFTN---LS 62
           ++ +    +T+  E    +  +++    L        F+  +   IP +L          
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 63  TKLRILDAGGNQF----AGDIPAGIPKYFNLIQLGLDRNCL--AGSIPFSIGKLQNLQKL 116
            KL  +    N F       +   + K+  L  L L  N L        +   LQ L   
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELAVN 152

Query: 117 NPLATSLYSFQLNLAENNLTGN----IPESLENLTSLQILNLSCNHLG--GSIPKPSGLF 170
                +     +    N L         ++ ++   L  + +  N +   G         
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 171 S---TLSSIDFAHNNF--NGSLPLEVGSLSNT--QELDFSEHMLSDEIPITLGNRSKFEH 223
           +    L  +D   N F   GS  L +   S    +EL  ++ +LS       G  +  + 
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-----GAAAVVDA 267

Query: 224 LLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSG----TIPKELET-LPFLENLNLSFNN 278
                N              G   L L +N +      T+   ++  +P L  L L+ N 
Sbjct: 268 FSKLEN-------------IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 279 F 279
           F
Sbjct: 315 F 315

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 39/144 (27%)

Query: 400 FEFMPNGSLESWL------------HPNEATRRLDLAEGLKIAVDIPS------------ 435
           FE+M +G L  +L              + A   L L + L +A  + +            
Sbjct: 122 FEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVH 181

Query: 436 ------NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG---SIGYNMEWVAR 486
                 N L+   +   +GDFG++R + +     + G++     W    SI Y      +
Sbjct: 182 RDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYR-----K 236

Query: 487 YQHKGKGYSCGILLLEIMT-GKRP 509
           +  +   +S G++L EI T GK+P
Sbjct: 237 FTTESDVWSFGVVLWEIFTYGKQP 260

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 36/137 (26%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD 442
           EF   G+LE W+       +LD    L++   I                  PSN+ L   
Sbjct: 100 EFCDKGTLEQWIE-KRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDT 158

Query: 443 MTAYVGDFGLARFL-PTNVTNPMKGQSNSAA--VWGSIGYNME---WVARYQHKGKGYSC 496
               +GDFGL   L         KG     +     S  Y  E   +           + 
Sbjct: 159 KQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLY-----------AL 207

Query: 497 GILLLEIMTGKRPTDEM 513
           G++L E++       E 
Sbjct: 208 GLILAELLHVCDTAFET 224

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 44/147 (29%)

Query: 400 FEFMPNGSLESWL-------------HPNEATRRLDLAEGLKIAVDIPS----------- 435
           FE+M +G L  +L              P +A   L L++ L IA  I S           
Sbjct: 96  FEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFV 155

Query: 436 -------NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSN-----SAAVWGSIGYNMEW 483
                  N L+  ++   +GDFG++R + +     + G +            SI Y    
Sbjct: 156 HRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMP--PESIMYR--- 210

Query: 484 VARYQHKGKGYSCGILLLEIMT-GKRP 509
             ++  +   +S G++L EI T GK+P
Sbjct: 211 --KFTTESDVWSFGVILWEIFTYGKQP 235

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 25/80 (31%)

Query: 400 FEFMPNGSLESWL-------HPNEATRRLDLAEGLKIAVDIPS----------------- 435
            E M  G L+S+L         N       L++ +++A +I                   
Sbjct: 107 MELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAA 166

Query: 436 -NVLLDYDMTAYVGDFGLAR 454
            N ++  D T  +GDFG+ R
Sbjct: 167 RNCMVAEDFTVKIGDFGMTR 186

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 40/145 (27%)

Query: 400 FEFMPNGSLESWLH-------------PNEATRRLDLAEGLKIAVDIPS----------- 435
           F +  +G L  +L                     L+  + + +   I +           
Sbjct: 91  FSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVV 150

Query: 436 -------NVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVW---GSIGYNMEWVA 485
                  NVL+   +   + D GL R +       + G S     W    +I Y      
Sbjct: 151 HKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYG----- 205

Query: 486 RYQHKGKGYSCGILLLEIMT-GKRP 509
           ++      +S G++L E+ + G +P
Sbjct: 206 KFSIDSDIWSYGVVLWEVFSYGLQP 230

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 25/127 (19%)

Query: 35  SKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF----NLI 90
             L  L L SN L  +     DS T L+     LD G NQ    +P+ +   F    +L 
Sbjct: 64  INLKELYLGSNQLGALPVGVFDSLTQLTV----LDLGTNQLTV-LPSAV---FDRLVHLK 115

Query: 91  QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQ 150
           +L +  N L   +P  I +L +L              L L +N L      + + L+SL 
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLT------------HLALDQNQLKSIPHGAFDRLSSLT 162

Query: 151 ILNLSCN 157
              L  N
Sbjct: 163 HAYLFGN 169

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFL--PTNVTNPMKGQSNSAA--VWGSIGYNME---W 483
           DI   N+ L  D T  +GDFG+AR L     +     G     +  +  +  YN +   W
Sbjct: 150 DIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIW 209

Query: 484 VARYQHKGKGYSCGILLLEIMTGKRP 509
                      + G +L E+ T K  
Sbjct: 210 -----------ALGCVLYELCTLKHA 224

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 46/142 (32%)

Query: 400 FEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDIPS------------------NVLLDY 441
            EF+  GSL+++L  N+    +++   L++A  + +                  N+LL  
Sbjct: 91  QEFVKFGSLDTYLKKNK--NCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIR 148

Query: 442 DMTAY--------VGDFGLARFLPTN--VTNPMKGQSNSAAVWG---SIGYNMEWVARYQ 488
           +            + D G++  +     +   +         W     I           
Sbjct: 149 EEDRKTGNPPFIKLSDPGISITVLPKDILQERIP--------WVPPECIENP----KNLN 196

Query: 489 HKGKGYSCGILLLEIMT-GKRP 509
                +S G  L EI + G +P
Sbjct: 197 LATDKWSFGTTLWEICSGGDKP 218

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 19/142 (13%)

Query: 89  LIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTS 148
            ++L      +   +  ++  L+  + L             L+ NN+   I  SL  + +
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLA------------LSTNNIE-KI-SSLSGMEN 71

Query: 149 LQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS 208
           L+IL+L  N +   I     +  TL  +  ++N       +E   L N + L  S + ++
Sbjct: 72  LRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKIT 128

Query: 209 DEIPI-TLGNRSKFEHLLLGGN 229
           +   I  L    K E LLL GN
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 58/196 (29%)

Query: 107 IGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKP 166
           I   +  + +   AT     +L+     +   +  +L  L + + L LS N+    I K 
Sbjct: 11  IRIFEERKSVV--ATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNN----IEKI 63

Query: 167 SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLL 226
           S L                        + N + L                         L
Sbjct: 64  SSL----------------------SGMENLRILS------------------------L 77

Query: 227 GGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE--GQLP 284
           G N+ + +I           +L +S+N ++ ++   +E L  L  L +S N     G++ 
Sbjct: 78  GRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 285 SMSVFTNTSVISIVGN 300
            ++       + + GN
Sbjct: 135 KLAALDKLEDLLLAGN 150

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 36/136 (26%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD 442
           +     +L+ W++        + +  L I + I                  PSN+    D
Sbjct: 95  QLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMD 154

Query: 443 MTAYVGDFGLARFL--PTNVTNPMKGQSNSAAVWGSIG--YNM--EWVARYQHKGKGY-- 494
               VGDFGL   +         +      A   G +G    M  E     Q  G  Y  
Sbjct: 155 DVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPE-----QIHGNSYSH 209

Query: 495 -----SCGILLLEIMT 505
                S G++L E++ 
Sbjct: 210 KVDIFSLGLILFELLY 225

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 385 GSSMDSGGNDFKA-LAFEFMPNGSLESWLHPNEAT-RRLDLAEGLKIAVDI--------- 433
              +   G   +A L   F   G+L + +   +     L   + L + + I         
Sbjct: 93  AYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA 152

Query: 434 ---------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNS--AAVWGSIGYNM- 481
                    P+N+LL  +    + D G       +V    +  +    AA   +I Y   
Sbjct: 153 KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISY-RA 211

Query: 482 -EWVARYQHKGKGY-----SCGILLLEIMTGKRPTDEMFADCLSL 520
            E  +   H          S G +L  +M G+ P D +F    S+
Sbjct: 212 PELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSV 256

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFL--PTNVTNPMKGQSNSAA--VWGSIGYNME---W 483
           D+ P+NV LD      +GDFGLAR L   T+      G     +      + YN +   W
Sbjct: 141 DLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIW 200

Query: 484 VARYQHKGKGYSCGILLLEIMTGKRP 509
                      S G LL E+     P
Sbjct: 201 -----------SLGCLLYELCALMPP 215

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 20/162 (12%)

Query: 10  LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNN-----LHGIIPPSLDSFTNLSTK 64
           L  +  LN         +     P   L  L + S       +  I+   L +   L   
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 65  LRILDAGGNQFAGDIPAGI--PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
           + + D G +             ++ NL  LG+        +     +   L +L      
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE----- 282

Query: 123 LYSFQLNLAENNLTGN----IPESLENLTSLQILNLSCNHLG 160
                ++++   LT      + + ++ +  L+ +N+  N+L 
Sbjct: 283 ----TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 31/86 (36%)

Query: 400 FEFMPNGSLESWL-------------HPNEATRRLDLAEGLKIAVDIPS----------- 435
            EF   G+L ++L               +     L L   +  +  +             
Sbjct: 111 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI 170

Query: 436 -------NVLLDYDMTAYVGDFGLAR 454
                  N+LL       + DFGLAR
Sbjct: 171 HRDLAARNILLSEKNVVKICDFGLAR 196

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 31/88 (35%)

Query: 398 LAFEFMPNGSLESWL-------------HPNEATRRLDLAEGLKIAVDIPS--------- 435
           +  E+   G+L  +L                    ++   + +     +           
Sbjct: 118 VIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK 177

Query: 436 ---------NVLLDYDMTAYVGDFGLAR 454
                    NVL+  +    + DFGLAR
Sbjct: 178 CIHRDLAARNVLVTENNVMKIADFGLAR 205

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 16/123 (13%)

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
           S+ LR    G    A D    +P   NL +L ++       +      L+ L +L     
Sbjct: 10  SSGLRCTRDG----ALDSLHHLPGAENLTELYIENQQHLQHLEL--RDLRGLGELR---- 59

Query: 122 SLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
                 L + ++ L    P++      L  LNLS N L  S+   +    +L  +  + N
Sbjct: 60  -----NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGN 113

Query: 182 NFN 184
             +
Sbjct: 114 PLH 116

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 31/86 (36%)

Query: 400 FEFMPNGSLESWL-------------HPNEATRRLDLAEGLKIAVDIPS----------- 435
            E+   G+L  +L                    ++   + +     +             
Sbjct: 166 VEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI 225

Query: 436 -------NVLLDYDMTAYVGDFGLAR 454
                  NVL+  +    + DFGLAR
Sbjct: 226 HRDLAARNVLVTENNVMKIADFGLAR 251

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 17/84 (20%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA--VWGSIGYNME---WVA 485
           DI P N+LL       + DFG +   P++    + G  +     +     ++ +   W  
Sbjct: 134 DIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLW-- 191

Query: 486 RYQHKGKGYSCGILLLEIMTGKRP 509
                    S G+L  E + GK P
Sbjct: 192 ---------SLGVLCYEFLVGKPP 206

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 17/84 (20%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAA--VWGSIGYNME---WVA 485
           DI P N+L+ Y     + DFG +   P+     M G  +     +     ++ +   W  
Sbjct: 139 DIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLW-- 196

Query: 486 RYQHKGKGYSCGILLLEIMTGKRP 509
                      G+L  E + G  P
Sbjct: 197 ---------CAGVLCYEFLVGMPP 211

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 13/82 (15%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--E-WVARY 487
           D+ P+N+ L       +GDFGL   L         G+       G   Y M  E     Y
Sbjct: 182 DVKPANIFLGPRGRCKLGDFGLLVEL----GTAGAGEV----QEGDPRY-MAPELLQGSY 232

Query: 488 QHKGKGYSCGILLLEIMTGKRP 509
                 +S G+ +LE+      
Sbjct: 233 GTAADVFSLGLTILEVACNMEL 254

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 37/138 (26%)

Query: 401 EFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD 442
           E+  NG+L   +H           E  ++   I                  P N+ +D  
Sbjct: 95  EYCENGTLYDLIH--SENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDES 152

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWG----SIG--YNMEWVARYQHKGKG--- 493
               +GDFGLA+ +  ++        N          +IG      +VA     G G   
Sbjct: 153 RNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAM---YVATEVLDGTGHYN 209

Query: 494 -----YSCGILLLEIMTG 506
                YS GI+  E++  
Sbjct: 210 EKIDMYSLGIIFFEMIYP 227

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 24/114 (21%)

Query: 79  IPAGIPKYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKL----NPL----------ATSL 123
           IP  IP +    +L L+ N L       + G+L +L KL    N L          A+ +
Sbjct: 23  IPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 124 YSFQLNLAENNLTGNIPESL-ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSI 176
              +L L EN +   I   +   L  L+ LNL  N +   +    G F  L+S+
Sbjct: 81  Q--ELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMP--GSFEHLNSL 128

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 29/84 (34%)

Query: 400 FEFMPNGSLESWL-----------HPNEATRRLDLAEGLKIAVDIPS------------- 435
            E+   G L ++L               A       + L  +  +               
Sbjct: 129 TEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHR 188

Query: 436 -----NVLLDYDMTAYVGDFGLAR 454
                NVLL     A +GDFGLAR
Sbjct: 189 DVAARNVLLTNGHVAKIGDFGLAR 212

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 31/86 (36%)

Query: 400 FEFMPNGSLESWL-------------HPNEATRRLDLAEGLKIAVDIPS----------- 435
            E+   G+L  +L               +    +L   + +  A  +             
Sbjct: 154 VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCI 213

Query: 436 -------NVLLDYDMTAYVGDFGLAR 454
                  NVL+  D    + DFGLAR
Sbjct: 214 HRDLAARNVLVTEDNVMKIADFGLAR 239

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 5/111 (4%)

Query: 193 SLSNTQELDFSEHMLSD-EIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLS 251
           + S+ +EL       ++ ++        + E L          I            L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANL-PKLNKLKKLELS 72

Query: 252 HNNLSGTIPKELETLPFLENLNLSFNNFE--GQLPSMSVFTNTSVISIVGN 300
            N +SG +    E  P L +LNLS N  +    +  +    N   + +   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 20/151 (13%), Positives = 43/151 (28%), Gaps = 49/151 (32%)

Query: 385 GSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI----------- 433
               D  G+    +  E++   SL+         ++L +AE +   ++I           
Sbjct: 148 VEHTDRHGDPVGYIVMEYVGGQSLKRSKG-----QKLPVAEAIAYLLEILPALSYLHSIG 202

Query: 434 -------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM--EWV 484
                  P N++L  +    + D G    +                ++G+ G+    E  
Sbjct: 203 LVYNDLKPENIMLTEE-QLKLIDLGAVSRI---------NSFG--YLYGTPGF-QAPE-- 247

Query: 485 ARYQHKGKG------YSCGILLLEIMTGKRP 509
                +         Y+ G  L  +      
Sbjct: 248 ---IVRTGPTVATDIYTVGRTLAALTLDLPT 275

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 39/94 (41%)

Query: 400 FEFMPNGSLESWL---------------------HPNEATRRLDLAEGLKIAVDIPS--- 435
           FE+M  G L  +L                       +     L  AE L IA  + +   
Sbjct: 129 FEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMA 188

Query: 436 ---------------NVLLDYDMTAYVGDFGLAR 454
                          N L+  +M   + DFGL+R
Sbjct: 189 YLSERKFVHRDLATRNCLVGENMVVKIADFGLSR 222

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 14  QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGN 73
             L+   ++++          + LT L L  N L  +     +  T+L+     L+   N
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY----LNLSTN 86

Query: 74  QFAGDIPAGI-PKYFNLIQLGLDRNCLAGSIPFSI-GKLQNLQKLNPLATSLYSFQLNLA 131
           Q    +P G+  K   L +L L+ N L  S+P  +  KL  L+ L      LY  QL   
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDL-----RLYQNQLK-- 137

Query: 132 ENNLTGNIPE-SLENLTSLQILNLSCN 157
                 ++P+   + LTSLQ + L  N
Sbjct: 138 ------SVPDGVFDRLTSLQYIWLHDN 158

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 39/94 (41%)

Query: 400 FEFMPNGSLESWL---------------------HPNEATRRLDLAEGLKIAVDIPS--- 435
            E+   GSL  +L                       +   R L + + +  A  I     
Sbjct: 105 VEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQ 164

Query: 436 ---------------NVLLDYDMTAYVGDFGLAR 454
                          N+L+       + DFGL+R
Sbjct: 165 YLAEMKLVHRDLAARNILVAEGRKMKISDFGLSR 198

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 21/100 (21%)

Query: 63  TKLRILDAGGNQFAGDIPA--GIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL 119
            + R LD  G +    IP    +         +    N         I KL     L  L
Sbjct: 19  VRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNE--------IRKLDGFPLLRRL 66

Query: 120 ATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHL 159
            T      L +  N +        + L  L  L L+ N L
Sbjct: 67  KT------LLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 27/167 (16%), Positives = 46/167 (27%), Gaps = 33/167 (19%)

Query: 378 ELLRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---- 433
           +   A      +S     + L    +  G L  +L   E+   L     LKI        
Sbjct: 90  QFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAV 149

Query: 434 ----------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNS-----AA 472
                             N+LL    T  + DFG A  +          Q  +       
Sbjct: 150 QHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEIT 209

Query: 473 VWGSIGYNM--EWVARYQHKGKGY-----SCGILLLEIMTGKRPTDE 512
              +  Y    E +  Y +   G      + G +L  +   + P ++
Sbjct: 210 RNTTPMY-RTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFED 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	614
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.97
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.96
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.96
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.95
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.94
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.92
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.91
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.89
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.88
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.88
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.88
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.87
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.87
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.87
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.87
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.87
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.86
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.86
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.86
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.86
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.86
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.86
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.86
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.86
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.85
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.85
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.85
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.85
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.85
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.85
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.85
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.85
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.84
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.84
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.84
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.84
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.84
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.84
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.84
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.84
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.84
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.84
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.84
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.84
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.84
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.84
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.84
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.84
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.84
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.84
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.84
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.84
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.84
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.84
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.84
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.84
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.83
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.83
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.83
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.83
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.83
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.83
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.83
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.83
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.83
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.83
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.83
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.83
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.83
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.83
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.82
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.82
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.82
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.82
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.82
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.82
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.82
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.82
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.82
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.82
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.82
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.82
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.82
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.82
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.82
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.82
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.82
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.82
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.82
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.82
3niz_A	311	Rhodanese family protein; structural genomics, str	99.82
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.82
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.82
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.81
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.81
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.81
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.81
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.81
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.81
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.81
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.81
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.81
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.81
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.81
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.81
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.81
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.81
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.81
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.81
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.81
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.81
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.81
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.8
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.8
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.8
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.8
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.8
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.8
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.8
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.8
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.8
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.8
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.8
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.8
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.8
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.8
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.8
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.8
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.8
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.8
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.79
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.79
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.79
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.79
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.79
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.79
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.79
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.79
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.79
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.79
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.79
3bhy_A	283	Death-associated protein kinase 3; death associate	99.79
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.79
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.79
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.79
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.79
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.79
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.79
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.79
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.79
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.79
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.79
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.78
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.78
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.78
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.78
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.78
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.78
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.78
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.78
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.78
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.78
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.78
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.78
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.78
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.78
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.78
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.77
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.77
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.77
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.77
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.77
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.77
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.77
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.77
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.77
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.77
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.77
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.77
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.77
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.76
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.76
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.76
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.76
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.76
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.76
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.76
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.76
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.76
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.76
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.75
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.75
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.75
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.75
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.74
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.74
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.74
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.74
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.74
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.74
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.74
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.73
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.73
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.73
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.73
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.73
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.73
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.73
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.72
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.72
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.72
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.68
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
3uqc_A	286	Probable conserved transmembrane protein; structur	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.46
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.92
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.67
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.02
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.41
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	96.21
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	89.0
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	81.82

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-42  Score=392.99  Aligned_cols=309  Identities=33%  Similarity=0.478  Sum_probs=250.9

Q ss_pred             CCCccccCCC-CCCeeeecCCcccccCCcCCCC--CCCCcEEecccccCcccCCcChhhhccccccccEEEccCCccccc
Q 046036            2 NVPQEIGNLF-RLQNLNFGNSTVQGEIPSHLSP--TSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGD   78 (614)
Q Consensus         2 ~ip~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~   78 (614)
                      .+|..+.+++ +|+.|+|++|.+++.+|..+..  +++|++|+|++|++++.+|..   +.+++ +|++|+|++|++++.
T Consensus       358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~-~L~~L~Ls~N~l~~~  433 (768)
T 3rgz_A          358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT---LSNCS-ELVSLHLSFNYLSGT  433 (768)
T ss_dssp             CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG---GGGCT-TCCEEECCSSEEESC
T ss_pred             cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH---HhcCC-CCCEEECcCCcccCc
Confidence            3444444444 4555555555555555554444  556666666666666666666   55665 777888888888777


Q ss_pred             CCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccc--------cc----ccceEecCCCccccccchhhhcc
Q 046036           79 IPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT--------SL----YSFQLNLAENNLTGNIPESLENL  146 (614)
Q Consensus        79 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~--------~~----~l~~L~L~~N~l~~~~~~~~~~l  146 (614)
                      +|..+..+++|++|+|++|.+++.+|..++.+++|++|++..+        .+    +++.|+|++|++++.+|.+|+.+
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL  513 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence            7777888888888888888888778888888888888876222        22    67788899999998899999999


Q ss_pred             CCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccc-----------------------------------
Q 046036          147 TSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEV-----------------------------------  191 (614)
Q Consensus       147 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----------------------------------  191 (614)
                      ++|++|+|++|++++.+|..+..+++|+.|++++|.++|.+|..+                                   
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            999999999999998899989999999999999998887777543                                   


Q ss_pred             -----------------------------------cCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCC
Q 046036          192 -----------------------------------GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP  236 (614)
Q Consensus       192 -----------------------------------~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  236 (614)
                                                         +.+++|+.|||++|+++|.+|..|+.+++|+.|+|++|.++|.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                                               335678899999999999999999999999999999999999999


Q ss_pred             ccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCcccCCCCccccccc
Q 046036          237 PFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSCA  316 (614)
Q Consensus       237 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~~~~~~~~c~  316 (614)
                      ..++.+++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.+|....+.++...++.|||++||.+.    .+|.
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l----~~C~  749 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL----PRCD  749 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS----CCCC
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC----cCCC
Confidence            999999999999999999999999999999999999999999999999998899999899999999999642    3675


Q ss_pred             cc
Q 046036          317 IE  318 (614)
Q Consensus       317 ~~  318 (614)
                      ..
T Consensus       750 ~~  751 (768)
T 3rgz_A          750 PS  751 (768)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-39  Score=369.42  Aligned_cols=307  Identities=35%  Similarity=0.541  Sum_probs=244.8

Q ss_pred             CCCCccccCCCCCCeeeecCCcccccCCcC-CCCCCCCcEEecccccCcccCCcChhhhc--------------------
Q 046036            1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSH-LSPTSKLTYLSLFSNNLHGIIPPSLDSFT--------------------   59 (614)
Q Consensus         1 g~ip~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--------------------   59 (614)
                      |.+|..|+++++|++|+|++|.+++.+|.. |..+++|++|+|++|.+++.+|..+..+.                    
T Consensus       308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~  387 (768)
T 3rgz_A          308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN  387 (768)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred             CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence            356778888888888888888887777765 77788888888888888777777754432                    


Q ss_pred             --c--ccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccc--------cccc----
Q 046036           60 --N--LSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL--------ATSL----  123 (614)
Q Consensus        60 --~--l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~--------~~~~----  123 (614)
                        .  ++ +|++|+|++|.+++.+|..+.++++|++|+|++|++++.+|..++.+++|+.|++.        |..+    
T Consensus       388 ~~~~~~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  466 (768)
T 3rgz_A          388 LCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK  466 (768)
T ss_dssp             TTCSTTC-CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             hhhcccC-CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence              1  33 57777777777777777778888888888888888888888888888888888762        2222    


Q ss_pred             ccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccC
Q 046036          124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFS  203 (614)
Q Consensus       124 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  203 (614)
                      +++.|+|++|++++.+|..|.++++|++|+|++|++++.+|..++.+++|++|+|++|++++.+|..++.+++|+.|+++
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            67888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CccCCCCccccc--------------------------------------------------------------------
Q 046036          204 EHMLSDEIPITL--------------------------------------------------------------------  215 (614)
Q Consensus       204 ~N~l~~~~~~~~--------------------------------------------------------------------  215 (614)
                      +|.+++.+|..+                                                                    
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            888877666533                                                                    


Q ss_pred             --cCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC-ccccCCC
Q 046036          216 --GNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS-MSVFTNT  292 (614)
Q Consensus       216 --~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l  292 (614)
                        +.+++|+.|+|++|+++|.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|. +..++.+
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L  706 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML  706 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence              3356778888899999888898898899999999999999988999899999999999999999988875 4667888


Q ss_pred             ceEEEecCCCcccCCCC
Q 046036          293 SVISIVGNGKLCGGVPE  309 (614)
Q Consensus       293 ~~~~~~~N~~~c~~~~~  309 (614)
                      +.+++++|+ +.|.+|.
T Consensus       707 ~~L~ls~N~-l~g~iP~  722 (768)
T 3rgz_A          707 TEIDLSNNN-LSGPIPE  722 (768)
T ss_dssp             SEEECCSSE-EEEECCS
T ss_pred             CEEECcCCc-ccccCCC
Confidence            888888886 5565553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2e-36  Score=323.27  Aligned_cols=292  Identities=20%  Similarity=0.195  Sum_probs=236.3

Q ss_pred             CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccC-CcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           11 FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGII-PPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      ++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..   |.+++ +|++|+|++|.+++..|..|.++++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLS-SLIILKLDYNQFLQLETGAFNGLANL  105 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT---TTTCT-TCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccc---ccccc-cCCEEeCCCCccCccChhhccCcccC
Confidence            68999999999999888999999999999999999987555 445   77787 89999999999988888899999999


Q ss_pred             CEEeccCCcCcccCCcc--ccCCCCCCccccc--------ccc-c----ccceEecCCCccccccchhhhcc--------
Q 046036           90 IQLGLDRNCLAGSIPFS--IGKLQNLQKLNPL--------ATS-L----YSFQLNLAENNLTGNIPESLENL--------  146 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~--~~~l~~L~~L~l~--------~~~-~----~l~~L~L~~N~l~~~~~~~~~~l--------  146 (614)
                      ++|+|++|.+++..|..  |+.+++|++|++.        +.. +    ++++|+|++|++++..+..+..+        
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence            99999999998765554  8889999988862        221 1    56677777777777666665544        


Q ss_pred             --------------------------CCCCeeecccccCCCCCCCCC---------------------------------
Q 046036          147 --------------------------TSLQILNLSCNHLGGSIPKPS---------------------------------  167 (614)
Q Consensus       147 --------------------------~~L~~L~L~~N~l~~~~p~~~---------------------------------  167 (614)
                                                ++|++|++++|++++..|..+                                 
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  265 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD  265 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence                                      456666666665543222111                                 


Q ss_pred             ----C--CCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccC
Q 046036          168 ----G--LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS  241 (614)
Q Consensus       168 ----~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  241 (614)
                          .  ..++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|+.|+|++|.+++..|..|..
T Consensus       266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred             ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence                0  1257888888888888888888899999999999999999888889999999999999999998888888999


Q ss_pred             CCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCc-cccCCCceEEEecCCCcccC
Q 046036          242 FKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSM-SVFTNTSVISIVGNGKLCGG  306 (614)
Q Consensus       242 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~  306 (614)
                      +++|+.|+|++|++++..|..|..+++|+.|++++|++++.++.. ..+++++.+++.+|++.|..
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            999999999999999888889999999999999999999876643 56788999999999988753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-37  Score=314.49  Aligned_cols=255  Identities=30%  Similarity=0.505  Sum_probs=232.7

Q ss_pred             CCCcEEecccccCcc--cCCcChhhhccccccccEEEccC-CcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCC
Q 046036           35 SKLTYLSLFSNNLHG--IIPPSLDSFTNLSTKLRILDAGG-NQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQ  111 (614)
Q Consensus        35 ~~L~~L~L~~N~l~~--~~p~~~~~~~~l~~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  111 (614)
                      .+++.|+|++|.+++  .+|..   +.+++ +|++|+|++ |.+++.+|..|.++++|++|+|++|.+++.+|..|.+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~---l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS---LANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG---GGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChh---HhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            578999999999998  78887   67777 899999995 888888998999999999999999999988999999999


Q ss_pred             CCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCC-CCCEEEcCCCCCccCCccc
Q 046036          112 NLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS-TLSSIDFAHNNFNGSLPLE  190 (614)
Q Consensus       112 ~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~  190 (614)
                      +|++|+            |++|.+++.+|..|..+++|++|+|++|++++.+|..+..++ +|++|++++|.+++.+|..
T Consensus       126 ~L~~L~------------Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          126 TLVTLD------------FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             TCCEEE------------CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             CCCEEe------------CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            998887            999999988999999999999999999999888898888887 8999999999999999999


Q ss_pred             ccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCC
Q 046036          191 VGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLE  270 (614)
Q Consensus       191 ~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  270 (614)
                      +..+. |+.|++++|.+++..|..|..+++|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|+
T Consensus       194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  271 (313)
T 1ogq_A          194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence            98887 99999999999988999999999999999999999876665 88899999999999999999999999999999


Q ss_pred             EEECcCCcCcccCCCccccCCCceEEEecCCCcccCC
Q 046036          271 NLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGV  307 (614)
Q Consensus       271 ~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~  307 (614)
                      .|++++|++++.+|....++++..+++.+|+++||.+
T Consensus       272 ~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             EEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence            9999999999999998889999999999999999964

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=323.51  Aligned_cols=298  Identities=20%  Similarity=0.189  Sum_probs=260.7

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .||..+  .++++.|+|++|++++..|..|.++++|++|+|++|.+++..|..   |.+++ +|++|+|++|++++..+.
T Consensus        25 ~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~   98 (477)
T 2id5_A           25 AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA---FNNLF-NLRTLGLRSNRLKLIPLG   98 (477)
T ss_dssp             SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT---TTTCT-TCCEEECCSSCCCSCCTT
T ss_pred             cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh---hhCCc-cCCEEECCCCcCCccCcc
Confidence            366655  358899999999999888888999999999999999998887877   67777 889999999999866666


Q ss_pred             CCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc------------ccceEecCCCccccccchhhhccCCC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL------------YSFQLNLAENNLTGNIPESLENLTSL  149 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~------------~l~~L~L~~N~l~~~~~~~~~~l~~L  149 (614)
                      .|.++++|++|+|++|.+++..|..|..+++|+.|++..+.+            +|+.|+|++|++++..+..|..+++|
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  178 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL  178 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred             cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence            788899999999999999888888889999999888733222            67888899999998777889999999


Q ss_pred             CeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCc
Q 046036          150 QILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGN  229 (614)
Q Consensus       150 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N  229 (614)
                      +.|+|++|.+.+..+..+..+++|+.|++++|.+.+.+|..+....+|+.|++++|.+++..+..|..+++|+.|+|++|
T Consensus       179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            99999999999888888999999999999999988888887777789999999999999776678999999999999999


Q ss_pred             cccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC-ccccCCCceEEEecCCCccc
Q 046036          230 MFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS-MSVFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       230 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~N~~~c~  305 (614)
                      .+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+. +..+++++.+++.+|++.|.
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            99988888899999999999999999999999999999999999999999987664 35678899999999999885

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.8e-36  Score=317.82  Aligned_cols=281  Identities=19%  Similarity=0.188  Sum_probs=244.4

Q ss_pred             CCccccCCCCCCeeeecCCccccc-CCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGE-IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .|..|+++++|++|+|++|.+.+. .+..|.++++|++|+|++|++++..|..   |.+++ +|++|+|++|++++..|.
T Consensus        46 ~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~  121 (455)
T 3v47_A           46 NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA---FNGLA-NLEVLTLTQCNLDGAVLS  121 (455)
T ss_dssp             CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT---TTTCT-TCCEEECTTSCCBTHHHH
T ss_pred             ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh---ccCcc-cCCEEeCCCCCCCccccC
Confidence            367788899999999999988744 4677889999999999999998888887   66776 888999999988865444


Q ss_pred             C--CcCCCCCCEEeccCCcCcccCCcc-ccCCCCCCcccccccc------------------------------------
Q 046036           82 G--IPKYFNLIQLGLDRNCLAGSIPFS-IGKLQNLQKLNPLATS------------------------------------  122 (614)
Q Consensus        82 ~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~~~------------------------------------  122 (614)
                      .  |..+++|++|+|++|.+++..|.. ++++++|++|++..+.                                    
T Consensus       122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~  201 (455)
T 3v47_A          122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG  201 (455)
T ss_dssp             SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred             cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc
Confidence            3  888889999999999988777766 7888888888872221                                    


Q ss_pred             ----------cccceEecCCCccccccchhhhcc---------------------------------------CCCCeee
Q 046036          123 ----------LYSFQLNLAENNLTGNIPESLENL---------------------------------------TSLQILN  153 (614)
Q Consensus       123 ----------~~l~~L~L~~N~l~~~~~~~~~~l---------------------------------------~~L~~L~  153 (614)
                                .+++.|++++|++++..|..+..+                                       ++|++|+
T Consensus       202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  281 (455)
T 3v47_A          202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD  281 (455)
T ss_dssp             HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred             ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence                      147889999999987777666443                                       6899999


Q ss_pred             cccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccc
Q 046036          154 LSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG  233 (614)
Q Consensus       154 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  233 (614)
                      +++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++
T Consensus       282 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA  361 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred             ecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence            99999998899999999999999999999999889999999999999999999999889999999999999999999998


Q ss_pred             cCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCcc
Q 046036          234 RIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS  287 (614)
Q Consensus       234 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~  287 (614)
                      ..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++.+|...
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            889999999999999999999998877888999999999999999999998643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-36  Score=307.78  Aligned_cols=253  Identities=29%  Similarity=0.460  Sum_probs=239.4

Q ss_pred             CCCCeeeecCCcccc--cCCcCCCCCCCCcEEeccc-ccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCC
Q 046036           11 FRLQNLNFGNSTVQG--EIPSHLSPTSKLTYLSLFS-NNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF   87 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~   87 (614)
                      .+++.|+|++|.+++  .+|..|+++++|++|+|++ |.+.+.+|..   |.+++ +|++|+|++|++++.+|..|.+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~---l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLT-QLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCT-TCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh---HhcCC-CCCEEECcCCeeCCcCCHHHhCCC
Confidence            579999999999999  8999999999999999995 9999999998   77787 999999999999999999999999


Q ss_pred             CCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccC-CCCeeecccccCCCCCCCC
Q 046036           88 NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLT-SLQILNLSCNHLGGSIPKP  166 (614)
Q Consensus        88 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~  166 (614)
                      +|++|+|++|.+++.+|..++.+++|++|+            |++|++++.+|..+..++ +|++|+|++|++++.+|..
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~------------L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGIT------------FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEE------------CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEE------------CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            999999999999999999999999999888            999999999999999998 9999999999999999999


Q ss_pred             CCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccc
Q 046036          167 SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI  246 (614)
Q Consensus       167 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  246 (614)
                      +..++ |++|++++|.+++..|..|..+++|+.|++++|.+++..|. +..+++|++|+|++|.+++.+|.++..+++|+
T Consensus       194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  271 (313)
T 1ogq_A          194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence            99887 99999999999999999999999999999999999977766 88899999999999999999999999999999


Q ss_pred             eEEccCCcCcccCCcccCCCCCCCEEECcCCc-Cccc
Q 046036          247 DLNLSHNNLSGTIPKELETLPFLENLNLSFNN-FEGQ  282 (614)
Q Consensus       247 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~  282 (614)
                      .|+|++|++++.+|.. ..+++|+.+++++|+ +.|.
T Consensus       272 ~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          272 SLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             EEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            9999999999999986 889999999999998 5553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-35  Score=327.65  Aligned_cols=294  Identities=19%  Similarity=0.250  Sum_probs=230.8

Q ss_pred             CCcccc--CCCCCCeeeecCCcccccCCcCCCCCCCCcEEeccccc-Ccc-cCCcChhhh---ccccccccEEEccCCcc
Q 046036            3 VPQEIG--NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNN-LHG-IIPPSLDSF---TNLSTKLRILDAGGNQF   75 (614)
Q Consensus         3 ip~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~~---~~l~~~L~~L~L~~N~l   75 (614)
                      +|++++  ++++|++|+|++|.+.+.+|+.|+++++|++|+|++|+ +++ .+|..++.+   ..++ +|++|+|++|++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcC
Confidence            999999  99999999999999999999999999999999999998 998 889885443   2346 999999999999


Q ss_pred             cccCCC--CCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccc-------cccc----c-cceEecCCCccccccch
Q 046036           76 AGDIPA--GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPL-------ATSL----Y-SFQLNLAENNLTGNIPE  141 (614)
Q Consensus        76 ~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~-------~~~~----~-l~~L~L~~N~l~~~~~~  141 (614)
                      + .+|.  .++++++|++|+|++|+++|.+| .|+.+++|++|++.       |..+    + ++.|+|++|.++ .+|.
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence            9 8998  89999999999999999999999 99999999999873       3333    4 888888888888 6777


Q ss_pred             hhhccC--CCCeeecccccCCCCCCCCCC-------CCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCcc
Q 046036          142 SLENLT--SLQILNLSCNHLGGSIPKPSG-------LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIP  212 (614)
Q Consensus       142 ~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~  212 (614)
                      .+..++  +|++|++++|.+++.+|..+.       .+++|++|+|++|.++...+..+..+++|+.|+|++|.++...+
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence            776654  788888888888887777777       67788888888888874333334557778888888887773333


Q ss_pred             ccccCc-------ccchHHhccCccccccCCcccc--CCCccceEEccCCcCcccCCcccCCCCCCCEEEC------cCC
Q 046036          213 ITLGNR-------SKFEHLLLGGNMFQGRIPPFFG--SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNL------SFN  277 (614)
Q Consensus       213 ~~~~~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------s~N  277 (614)
                      ..+...       ++|+.|+|++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++      ++|
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N  552 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN  552 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred             HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence            333322       27777777777777 5666665  77777777777777776 6777777777777777      446


Q ss_pred             cCcccCC-CccccCCCceEEEecCCC
Q 046036          278 NFEGQLP-SMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       278 ~l~~~~p-~~~~~~~l~~~~~~~N~~  302 (614)
                      ++.+.+| .+..+++++.+++.+|..
T Consensus       553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          553 RTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             cccccChHHHhcCCCCCEEECCCCcC
Confidence            6666665 355667777777777765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.4e-35  Score=322.15  Aligned_cols=179  Identities=23%  Similarity=0.179  Sum_probs=91.3

Q ss_pred             cceEecCCCccccc--cchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccccCCCCCceec
Q 046036          125 SFQLNLAENNLTGN--IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP-LEVGSLSNTQELD  201 (614)
Q Consensus       125 l~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~  201 (614)
                      +++|++++|.+++.  .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+++..| ..+..+++|++|+
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  430 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD  430 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence            34455555555543  25555666666666666665552 34445555555555555555554444 3444445555555


Q ss_pred             cCCccCCCCccc-------------------------cccCcccchHHhccCccccccCCccccCCCccceEEccCCcCc
Q 046036          202 FSEHMLSDEIPI-------------------------TLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       202 ls~N~l~~~~~~-------------------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  256 (614)
                      +++|.+++..|.                         .|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|+++
T Consensus       431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  510 (606)
T 3vq2_A          431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL  510 (606)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence            555554444444                         4445555555555555555444444555555555555555555


Q ss_pred             ccCCcccCCCCCCCEEECcCCcCcccCCCccccC-CCceEEEecCCCcc
Q 046036          257 GTIPKELETLPFLENLNLSFNNFEGQLPSMSVFT-NTSVISIVGNGKLC  304 (614)
Q Consensus       257 ~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~-~l~~~~~~~N~~~c  304 (614)
                      +..|..+..+++|+.|++++|+++..++.+..++ +++.+++.+||+.|
T Consensus       511 ~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence            4445555555555555555555554333333333 35555555555555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-35  Score=328.65  Aligned_cols=290  Identities=22%  Similarity=0.311  Sum_probs=242.1

Q ss_pred             CCccccCCCCCCeeeecCCccccc-----------------CCcCCC--CCCCCcEEecccccCcccCCcChhhhccccc
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGE-----------------IPSHLS--PTSKLTYLSLFSNNLHGIIPPSLDSFTNLST   63 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~   63 (614)
                      ||++|+++++|++|+|++|.+++.                 +|+.++  ++++|++|+|++|++.+.+|..   +.+++ 
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~-  273 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF---LKALP-  273 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT---TTTCS-
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH---HhcCC-
Confidence            899999999999999999999986                 999999  9999999999999999999988   77887 


Q ss_pred             cccEEEccCCc-ccc-cCCCCCcCC------CCCCEEeccCCcCcccCCc--cccCCCCCCcccccccc-------c---
Q 046036           64 KLRILDAGGNQ-FAG-DIPAGIPKY------FNLIQLGLDRNCLAGSIPF--SIGKLQNLQKLNPLATS-------L---  123 (614)
Q Consensus        64 ~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~l~~~~-------~---  123 (614)
                      +|++|+|++|+ +++ .+|..++.+      ++|++|+|++|+++ .+|.  .++++++|++|++..+.       +   
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l  352 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE  352 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence            99999999998 998 899888776      99999999999999 8898  99999999999973222       2   


Q ss_pred             -ccceEecCCCccccccchhhhccCC-CCeeecccccCCCCCCCCCCCCC--CCCEEEcCCCCCccCCccccc-------
Q 046036          124 -YSFQLNLAENNLTGNIPESLENLTS-LQILNLSCNHLGGSIPKPSGLFS--TLSSIDFAHNNFNGSLPLEVG-------  192 (614)
Q Consensus       124 -~l~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------  192 (614)
                       +++.|+|++|+++ .+|..|..+++ |++|+|++|.++ .+|..+..++  +|++|++++|.+++.+|..+.       
T Consensus       353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred             CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence             6778888888888 77778888888 888888888888 7777776654  788888888888888887777       


Q ss_pred             CCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCc-cccCCC-------ccceEEccCCcCcccCCcccC
Q 046036          193 SLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP-FFGSFK-------GTIDLNLSHNNLSGTIPKELE  264 (614)
Q Consensus       193 ~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~  264 (614)
                      .+.+|+.|+|++|.++...+..+..+++|+.|+|++|.++ .+|. .+....       +|+.|+|++|+++ .+|..+.
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  508 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR  508 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence            7778888888888888554455666888888888888888 4444 333332       8888888888888 6777776


Q ss_pred             --CCCCCCEEECcCCcCcccCCCccccCCCceEEEecCC
Q 046036          265 --TLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNG  301 (614)
Q Consensus       265 --~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~  301 (614)
                        .+++|+.|++++|++++.++....+++++.+++.+|.
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB
T ss_pred             hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc
Confidence              8888888888888888854556778888888887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-34  Score=321.01  Aligned_cols=281  Identities=23%  Similarity=0.275  Sum_probs=210.8

Q ss_pred             ccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCC-CcC
Q 046036            7 IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG-IPK   85 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~-~~~   85 (614)
                      |+++++|++|+|++|.++ .+|..+..+++|++|++++|.+++..|..   +.+++ +|++|++++|.+.+.+|.. +..
T Consensus       274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~l~-~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS---ASNFP-SLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC---GGGCT-TCSEEECCSCSSCCBCCSSTTTT
T ss_pred             hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh---hhccC-cCCEEECCCCCcccccchhhhhc
Confidence            444445555555555444 34444444455555555555544443433   33343 4445555555444333322 444


Q ss_pred             CCCCCEEeccCCcCcccC--CccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCC
Q 046036           86 YFNLIQLGLDRNCLAGSI--PFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSI  163 (614)
Q Consensus        86 l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  163 (614)
                      +++|++|++++|.+++..  +..++.+++|+            .|++++|++++..|..|..+++|++|++++|++.+..
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  416 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQ------------SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD  416 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCC------------EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCC------------EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence            455555555555544333  34444444444            5559999999999999999999999999999998776


Q ss_pred             CCC-CCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCC---ccccccCcccchHHhccCccccccCCccc
Q 046036          164 PKP-SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDE---IPITLGNRSKFEHLLLGGNMFQGRIPPFF  239 (614)
Q Consensus       164 p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  239 (614)
                      +.. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++.   .+..+..+++|+.|+|++|.+++..|..|
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred             cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence            554 88999999999999999998999999999999999999999873   33678899999999999999999989999


Q ss_pred             cCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC-ccccCCCceEEEecCCCccc
Q 046036          240 GSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS-MSVFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       240 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~N~~~c~  305 (614)
                      ..+++|+.|+|++|++++..|..+..+++| .|++++|++++.+|. +..+++++.+++.+||+.|.
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            999999999999999999999999999999 999999999988776 46688999999999999884

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.4e-35  Score=316.96  Aligned_cols=290  Identities=20%  Similarity=0.234  Sum_probs=199.9

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .||..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..   |.+++ +|++|+|++|+++ .+|.
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~-~L~~L~Ls~N~l~-~lp~   86 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV---FKFNQ-ELEYLDLSHNKLV-KISC   86 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG---GTTCT-TCCEEECCSSCCC-EEEC
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH---hhccc-CCCEEecCCCcee-ecCc
Confidence            3666665  77888888888888777777888888888888888888766766   66666 7888888888887 4555


Q ss_pred             CCcCCCCCCEEeccCCcCcc-cCCccccCCCCCCccccccccc---------cc--ceEecCCCcc--ccccchhhhccC
Q 046036           82 GIPKYFNLIQLGLDRNCLAG-SIPFSIGKLQNLQKLNPLATSL---------YS--FQLNLAENNL--TGNIPESLENLT  147 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~~~~---------~l--~~L~L~~N~l--~~~~~~~~~~l~  147 (614)
                      .  .+++|++|+|++|.+++ .+|..|+++++|++|++..+.+         ++  +.|++++|.+  .+..|..|..+.
T Consensus        87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccc
Confidence            4  67788888888888876 3677778888888777633322         33  6666666666  444444444322


Q ss_pred             --------------------------------------------------------------------------------
Q 046036          148 --------------------------------------------------------------------------------  147 (614)
Q Consensus       148 --------------------------------------------------------------------------------  147 (614)
                                                                                                      
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  244 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV  244 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence                                                                                            


Q ss_pred             ---CCCeeecccccCCCCCCCCC-----------------------------------------------------CCCC
Q 046036          148 ---SLQILNLSCNHLGGSIPKPS-----------------------------------------------------GLFS  171 (614)
Q Consensus       148 ---~L~~L~L~~N~l~~~~p~~~-----------------------------------------------------~~l~  171 (614)
                         +|++|++++|++++.+|..+                                                     ..++
T Consensus       245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~  324 (520)
T 2z7x_B          245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS  324 (520)
T ss_dssp             HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred             hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence               55666666666665555443                                                     4567


Q ss_pred             CCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCC--CccccccCcccchHHhccCccccccCCc-cccCCCccceE
Q 046036          172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD--EIPITLGNRSKFEHLLLGGNMFQGRIPP-FFGSFKGTIDL  248 (614)
Q Consensus       172 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L  248 (614)
                      +|++|++++|.+++.+|..++.+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+|. .+..+++|+.|
T Consensus       325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L  404 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL  404 (520)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred             cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence            77788888888877777777777888888888887776  4456677777788888888877764554 36667777777


Q ss_pred             EccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          249 NLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       249 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      ++++|++++..|..+.  ++|+.|++++|+++..++....+++++.+++.+|..
T Consensus       405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l  456 (520)
T 2z7x_B          405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL  456 (520)
T ss_dssp             ECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC
Confidence            7777777766665543  567777777777764444455666677777777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-34  Score=316.08  Aligned_cols=289  Identities=21%  Similarity=0.209  Sum_probs=191.8

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .||..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..   |.+++ +|++|+|++|+++ .+|.
T Consensus        45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~-~L~~L~Ls~N~l~-~lp~  117 (562)
T 3a79_B           45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV---FLFNQ-DLEYLDVSHNRLQ-NISC  117 (562)
T ss_dssp             SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT---TTTCT-TCCEEECTTSCCC-EECS
T ss_pred             cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH---hCCCC-CCCEEECCCCcCC-ccCc
Confidence            3666553  78888888888888777788888888888888888888777777   66676 8888888888887 5665


Q ss_pred             CCcCCCCCCEEeccCCcCccc-CCccccCCCCCCccccccccc---------cc--ceEecCCCcc--ccccchhhhccC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGS-IPFSIGKLQNLQKLNPLATSL---------YS--FQLNLAENNL--TGNIPESLENLT  147 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~~~~---------~l--~~L~L~~N~l--~~~~~~~~~~l~  147 (614)
                      .  .+++|++|+|++|++++. +|..|+++++|++|++..+.+         .+  +.|+|++|.+  ++..|..|..+.
T Consensus       118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~  195 (562)
T 3a79_B          118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN  195 (562)
T ss_dssp             C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred             c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccC
Confidence            5  788888888888888763 457888888888887733332         23  6677777766  444444443322


Q ss_pred             --------------------------------------------------------------------------------
Q 046036          148 --------------------------------------------------------------------------------  147 (614)
Q Consensus       148 --------------------------------------------------------------------------------  147 (614)
                                                                                                      
T Consensus       196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~  275 (562)
T 3a79_B          196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP  275 (562)
T ss_dssp             EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred             cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence                                                                                            


Q ss_pred             -CCCeeecccccCCCCCCCCC-----------------------------------------------------CCCCCC
Q 046036          148 -SLQILNLSCNHLGGSIPKPS-----------------------------------------------------GLFSTL  173 (614)
Q Consensus       148 -~L~~L~L~~N~l~~~~p~~~-----------------------------------------------------~~l~~L  173 (614)
                       +|++|++++|.+++.+|..+                                                     ..+++|
T Consensus       276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L  355 (562)
T 3a79_B          276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF  355 (562)
T ss_dssp             SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred             ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCc
Confidence             55666666666665555544                                                     455667


Q ss_pred             CEEEcCCCCCccCCcccccCCCCCceeccCCccCCCC--ccccccCcccchHHhccCccccccCCc-cccCCCccceEEc
Q 046036          174 SSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDE--IPITLGNRSKFEHLLLGGNMFQGRIPP-FFGSFKGTIDLNL  250 (614)
Q Consensus       174 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L  250 (614)
                      ++|++++|.+++.+|..+..+++|+.|++++|++++.  .|..|..+++|+.|++++|.+++.+|. .+..+++|+.|++
T Consensus       356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l  435 (562)
T 3a79_B          356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL  435 (562)
T ss_dssp             CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred             eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence            7777777777766666677777777777777777653  245566677777777777777653333 4556666666666


Q ss_pred             cCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCC
Q 046036          251 SHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNG  301 (614)
Q Consensus       251 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~  301 (614)
                      ++|++++.+|..+.  ++|+.|++++|+++..++....+++++.+++.+|.
T Consensus       436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             CSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC
T ss_pred             CCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC
Confidence            66666655444332  45666666666665444444455555566665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=314.75  Aligned_cols=301  Identities=22%  Similarity=0.176  Sum_probs=270.5

Q ss_pred             CccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCC
Q 046036            4 PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI   83 (614)
Q Consensus         4 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~   83 (614)
                      |..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..   |.+++ +|++|+|++|.+++..|..|
T Consensus        49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~-~L~~L~Ls~n~i~~~~~~~~  124 (477)
T 2id5_A           49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---FTGLS-NLTKLDISENKIVILLDYMF  124 (477)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS---STTCT-TCCEEECTTSCCCEECTTTT
T ss_pred             HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc---ccCCC-CCCEEECCCCccccCChhHc
Confidence            568999999999999999999999999999999999999999999665555   67787 99999999999998889999


Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc------------ccceEecCCCccccccchhhhccCCCCe
Q 046036           84 PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL------------YSFQLNLAENNLTGNIPESLENLTSLQI  151 (614)
Q Consensus        84 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~------------~l~~L~L~~N~l~~~~~~~~~~l~~L~~  151 (614)
                      ..+++|++|+|++|.+++..+..|.++++|+.|++..+.+            +++.|+|++|.+++..+..|..+++|++
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  204 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV  204 (477)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred             cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence            9999999999999999999999999999999999843332            7899999999999988889999999999


Q ss_pred             eecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccc
Q 046036          152 LNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMF  231 (614)
Q Consensus       152 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  231 (614)
                      |++++|.+.+.+|.......+|++|++++|.++...+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++
T Consensus       205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (477)
T 2id5_A          205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL  284 (477)
T ss_dssp             EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred             eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence            99999998888888877778999999999999966557899999999999999999998888999999999999999999


Q ss_pred             cccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCcccCCC
Q 046036          232 QGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVP  308 (614)
Q Consensus       232 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~~  308 (614)
                      ++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+.+.......+.++...|..+.
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence            99999999999999999999999998888889999999999999999998766555444444456677777886543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.4e-34  Score=323.43  Aligned_cols=296  Identities=19%  Similarity=0.240  Sum_probs=241.7

Q ss_pred             CCCcccc--CCCCCCeeeecCCcccccCCcCCCCCCCCcEEeccccc-Ccc-cCCcChhhhc----cccccccEEEccCC
Q 046036            2 NVPQEIG--NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNN-LHG-IIPPSLDSFT----NLSTKLRILDAGGN   73 (614)
Q Consensus         2 ~ip~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~~~----~l~~~L~~L~L~~N   73 (614)
                      .||++++  ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..++.+.    .++ +|++|+|++|
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~-~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP-KIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTT-TCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccC-CccEEEeeCC
Confidence            4899988  99999999999999999999999999999999999998 998 8888765543    555 8999999999


Q ss_pred             cccccCCC--CCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccc-------cc----c-cceEecCCCcccccc
Q 046036           74 QFAGDIPA--GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT-------SL----Y-SFQLNLAENNLTGNI  139 (614)
Q Consensus        74 ~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~-------~~----~-l~~L~L~~N~l~~~~  139 (614)
                      +++ .+|.  .|.++++|++|+|++|+++ .+| .|+.+++|+.|++..+       .+    + |+.|+|++|+++ .+
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cC
Confidence            999 8898  8999999999999999999 888 8999999999998332       23    5 889999999998 77


Q ss_pred             chhhhccCC--CCeeecccccCCCCCCCCC---C--CCCCCCEEEcCCCCCccCCcccc-cCCCCCceeccCCccCCCCc
Q 046036          140 PESLENLTS--LQILNLSCNHLGGSIPKPS---G--LFSTLSSIDFAHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEI  211 (614)
Q Consensus       140 ~~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N~l~~~~  211 (614)
                      |..+..++.  |+.|+|++|++.+.+|...   .  .+++|+.|+|++|.|+ .+|..+ ..+++|+.|+|++|.++. +
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-i  712 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-I  712 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-C
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-c
Confidence            877777654  9999999999987665322   2  3347888889988888 555544 478889999999998884 4


Q ss_pred             cccc-c-------CcccchHHhccCccccccCCcccc--CCCccceEEccCCcCcccCCcccCCCCCCCEEECcC-----
Q 046036          212 PITL-G-------NRSKFEHLLLGGNMFQGRIPPFFG--SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSF-----  276 (614)
Q Consensus       212 ~~~~-~-------~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~-----  276 (614)
                      |..+ .       ++++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++     
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence            4433 2       2338888899999888 6777776  88889999999999886 687888888899998876     


Q ss_pred             -CcCcccCC-CccccCCCceEEEecCCCcccCCC
Q 046036          277 -NNFEGQLP-SMSVFTNTSVISIVGNGKLCGGVP  308 (614)
Q Consensus       277 -N~l~~~~p-~~~~~~~l~~~~~~~N~~~c~~~~  308 (614)
                       |++.+.+| .+..+++++.+++.+|..  +.+|
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L--~~Ip  822 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDI--RKVD  822 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC--CBCC
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCC--CccC
Confidence             77777776 456688888888888875  4444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-33  Score=311.01  Aligned_cols=149  Identities=20%  Similarity=0.276  Sum_probs=94.4

Q ss_pred             eecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccc
Q 046036          152 LNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMF  231 (614)
Q Consensus       152 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  231 (614)
                      |++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            333333444333344556667777777777776 5666667777777777777777766666666777777777777766


Q ss_pred             cccCCc-cccCCCccceEEccCCcCcccC--CcccCCCCCCCEEECcCCcCcccCCC-ccccCCCceEEEecCC
Q 046036          232 QGRIPP-FFGSFKGTIDLNLSHNNLSGTI--PKELETLPFLENLNLSFNNFEGQLPS-MSVFTNTSVISIVGNG  301 (614)
Q Consensus       232 ~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~N~  301 (614)
                      .+.+|. .+..+++|+.|++++|.+++..  +..+..+++|+.|++++|.+++..|. +..+++++.+++.+|.
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            654443 3666677777777777766554  55666667777777777766665543 3445666666666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-33  Score=316.94  Aligned_cols=301  Identities=22%  Similarity=0.179  Sum_probs=210.3

Q ss_pred             CccccCCCC--CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhh------------------------
Q 046036            4 PQEIGNLFR--LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDS------------------------   57 (614)
Q Consensus         4 p~~~~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------------------------   57 (614)
                      |..|.+++.  |+.|+|++|.+++..|..|+.+++|++|+|++|++++..|..|..                        
T Consensus       239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp  318 (680)
T 1ziw_A          239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP  318 (680)
T ss_dssp             TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred             hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence            455555543  788888888777777777777778888888887777766655321                        


Q ss_pred             ------hccccccccEEEccCCcccccCCCCCcCCCCCCEEeccC----------------------------CcCcccC
Q 046036           58 ------FTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDR----------------------------NCLAGSI  103 (614)
Q Consensus        58 ------~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~----------------------------N~l~~~~  103 (614)
                            |..++ +|++|++++|.+++..|..|.++++|++|++++                            |++++..
T Consensus       319 ~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~  397 (680)
T 1ziw_A          319 KIDDFSFQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE  397 (680)
T ss_dssp             EECTTTTTTCT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred             ccChhhcccCC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence                  23343 566666666666655555555555444444433                            3344444


Q ss_pred             CccccCCCCCCccccccccc-------------ccceEecCCCccccccchhhhccCCCCeeecccccCC--CCCCCCCC
Q 046036          104 PFSIGKLQNLQKLNPLATSL-------------YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG--GSIPKPSG  168 (614)
Q Consensus       104 p~~~~~l~~L~~L~l~~~~~-------------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~  168 (614)
                      |..|..+++|+.|++..+.+             ++++|++++|++++..+..|..+++|+.|++++|.+.  +.+|..+.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            55555555555555421111             3455556666655555555666666666666666654  45677788


Q ss_pred             CCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCcc--------ccccCcccchHHhccCccccccCCcccc
Q 046036          169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIP--------ITLGNRSKFEHLLLGGNMFQGRIPPFFG  240 (614)
Q Consensus       169 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~p~~~~  240 (614)
                      .+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+        ..|..+++|+.|+|++|+++...+..|.
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            88888888888888887777778888888888888888876422        2367888889999999988855555788


Q ss_pred             CCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCc-c-ccCCCceEEEecCCCccc
Q 046036          241 SFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSM-S-VFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       241 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~-~~~~l~~~~~~~N~~~c~  305 (614)
                      ++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+.. . .++++..+++.+||+.|.
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            8999999999999999777777888999999999999999877653 2 578899999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.4e-34  Score=296.48  Aligned_cols=285  Identities=19%  Similarity=0.198  Sum_probs=223.7

Q ss_pred             CCcc-ccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            3 VPQE-IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         3 ip~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      +|.. |.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..   |.+++ +|++|+|++|.++...+.
T Consensus        60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~-~L~~L~L~~n~l~~l~~~  135 (390)
T 3o6n_A           60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVP-LLTVLVLERNDLSSLPRG  135 (390)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT-TCCEEECCSSCCCCCCTT
T ss_pred             CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH---hcCCC-CCCEEECCCCccCcCCHH
Confidence            5554 567889999999999998888888999999999999999998777776   66776 889999999998854444


Q ss_pred             CCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc---------ccceEecCCCccccccchhhhccCCCCee
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL---------YSFQLNLAENNLTGNIPESLENLTSLQIL  152 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~---------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L  152 (614)
                      .|.++++|++|+|++|.+++..|..|+.+++|++|++..+.+         +++.|++++|.+++.     ...++|+.|
T Consensus       136 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L  210 (390)
T 3o6n_A          136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL-----AIPIAVEEL  210 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE-----ECCSSCSEE
T ss_pred             HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc-----CCCCcceEE
Confidence            568889999999999999887788888888888888533322         455566666655522     233567777


Q ss_pred             ecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCcccc
Q 046036          153 NLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ  232 (614)
Q Consensus       153 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  232 (614)
                      ++++|.+... |..  ..++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..|..+++|+.|+|++|+++
T Consensus       211 ~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          211 DASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  285 (390)
T ss_dssp             ECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred             ECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence            7777777633 332  346888999999988853  56888899999999999998888888889999999999999988


Q ss_pred             ccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCccc
Q 046036          233 GRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       233 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~  305 (614)
                      + +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++...  ...+++++.+++.+|++.|.
T Consensus       286 ~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          286 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             c-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccch
Confidence            4 5666778889999999999988 56666778889999999999988653  55678888999999988874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.8e-33  Score=311.38  Aligned_cols=294  Identities=19%  Similarity=0.173  Sum_probs=233.4

Q ss_pred             CccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCC
Q 046036            4 PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI   83 (614)
Q Consensus         4 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~   83 (614)
                      |..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++..|..   |.+++ +|++|+|++|.+++..+..+
T Consensus        49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~-~L~~L~L~~n~l~~~~~~~~  124 (606)
T 3vq2_A           49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS---FSGLT-SLENLVAVETKLASLESFPI  124 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS---STTCT-TCCEEECTTSCCCCSSSSCC
T ss_pred             hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh---cCCcc-cCCEEEccCCcccccccccc
Confidence            346778888888888888888877888888888888888888888777777   66676 78888888888876666778


Q ss_pred             cCCCCCCEEeccCCcCcc-cCCccccCCCCCCccccccccc------------c----cceEecCCCccccccch-----
Q 046036           84 PKYFNLIQLGLDRNCLAG-SIPFSIGKLQNLQKLNPLATSL------------Y----SFQLNLAENNLTGNIPE-----  141 (614)
Q Consensus        84 ~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~~~~------------~----l~~L~L~~N~l~~~~~~-----  141 (614)
                      +++++|++|+|++|.+++ .+|..|+++++|++|++..+.+            +    +..|++++|.+++..+.     
T Consensus       125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~  204 (606)
T 3vq2_A          125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI  204 (606)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc
Confidence            888888888888888875 4577888888888877622211            0    11333333333211111     


Q ss_pred             --------------------------------------------------------------------------------
Q 046036          142 --------------------------------------------------------------------------------  141 (614)
Q Consensus       142 --------------------------------------------------------------------------------  141 (614)
                                                                                                      
T Consensus       205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l  284 (606)
T 3vq2_A          205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL  284 (606)
T ss_dssp             EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred             eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------hhhccCCCCeeecccccCCC
Q 046036          142 ------------------------------------------------------------SLENLTSLQILNLSCNHLGG  161 (614)
Q Consensus       142 ------------------------------------------------------------~~~~l~~L~~L~L~~N~l~~  161 (614)
                                                                                  .+..+++|++|++++|.+++
T Consensus       285 ~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  364 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF  364 (606)
T ss_dssp             TTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEE
T ss_pred             CCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCC
Confidence                                                                        12345667777777777775


Q ss_pred             C--CCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCcc-ccccCcccchHHhccCccccccCCcc
Q 046036          162 S--IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIP-ITLGNRSKFEHLLLGGNMFQGRIPPF  238 (614)
Q Consensus       162 ~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~  238 (614)
                      .  +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+++..| ..+..+++|+.|++++|.+++..|..
T Consensus       365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  443 (606)
T 3vq2_A          365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI  443 (606)
T ss_dssp             EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence            4  37778899999999999999985 66889999999999999999998887 68999999999999999999999999


Q ss_pred             ccCCCccceEEccCCcCcc-cCCcccCCCCCCCEEECcCCcCcccCCC-ccccCCCceEEEecCCC
Q 046036          239 FGSFKGTIDLNLSHNNLSG-TIPKELETLPFLENLNLSFNNFEGQLPS-MSVFTNTSVISIVGNGK  302 (614)
Q Consensus       239 ~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~N~~  302 (614)
                      +..+++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+|. +..+++++.+++.+|..
T Consensus       444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            9999999999999999998 4788999999999999999999998775 56788999999999964

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4e-34  Score=322.86  Aligned_cols=290  Identities=21%  Similarity=0.267  Sum_probs=235.0

Q ss_pred             CCccccCCCCCCeeeecCCcccc-----------------cCCcCCC--CCCCCcEEecccccCcccCCcChhhhccccc
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQG-----------------EIPSHLS--PTSKLTYLSLFSNNLHGIIPPSLDSFTNLST   63 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~   63 (614)
                      ||++|+++++|++|+|++|.|++                 .+|+.++  ++++|++|+|++|++.+.+|..   |.+++ 
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~---l~~L~-  515 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF---LYDLP-  515 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG---GGGCS-
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH---HhCCC-
Confidence            89999999999999999999998                 3899988  9999999999999999999988   77887 


Q ss_pred             cccEEEccCCc-ccc-cCCCCCcCC-------CCCCEEeccCCcCcccCCc--cccCCCCCCccccccccc---------
Q 046036           64 KLRILDAGGNQ-FAG-DIPAGIPKY-------FNLIQLGLDRNCLAGSIPF--SIGKLQNLQKLNPLATSL---------  123 (614)
Q Consensus        64 ~L~~L~L~~N~-l~~-~~p~~~~~l-------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~l~~~~~---------  123 (614)
                      +|++|+|++|+ +++ .+|..++.+       ++|++|+|++|+++ .+|.  .|+++++|+.|++..+.+         
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L  594 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN  594 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTT
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCC
Confidence            99999999998 988 788766555       49999999999999 8898  999999999999733222         


Q ss_pred             -ccceEecCCCccccccchhhhccCC-CCeeecccccCCCCCCCCCCCCCC--CCEEEcCCCCCccCCccc---cc--CC
Q 046036          124 -YSFQLNLAENNLTGNIPESLENLTS-LQILNLSCNHLGGSIPKPSGLFST--LSSIDFAHNNFNGSLPLE---VG--SL  194 (614)
Q Consensus       124 -~l~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~~---~~--~l  194 (614)
                       +++.|+|++|+++ .+|..+..+++ |+.|+|++|+++ .+|..+..++.  |+.|+|++|.+++.+|..   +.  .+
T Consensus       595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~  672 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG  672 (876)
T ss_dssp             SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred             CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence             6778888888888 77777888888 888888888888 67777766654  888888888888765532   22  33


Q ss_pred             CCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccC--------CCccceEEccCCcCcccCCcccC--
Q 046036          195 SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGS--------FKGTIDLNLSHNNLSGTIPKELE--  264 (614)
Q Consensus       195 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--  264 (614)
                      .+|+.|+|++|.++...+..+..+++|+.|+|++|.++ .+|..+..        +++|+.|+|++|+|+ .+|..+.  
T Consensus       673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~  750 (876)
T 4ecn_A          673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT  750 (876)
T ss_dssp             CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred             CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence            47888888888888543344457888888888888888 55554332        238888888888888 6777776  


Q ss_pred             CCCCCCEEECcCCcCcccCCCccccCCCceEEEecCC
Q 046036          265 TLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNG  301 (614)
Q Consensus       265 ~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~  301 (614)
                      .+++|+.|+|++|++++.++....+++++.+++.+|+
T Consensus       751 ~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             TCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred             cCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence            8888888888888888855566778888888888765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1e-33  Score=312.00  Aligned_cols=286  Identities=19%  Similarity=0.202  Sum_probs=236.2

Q ss_pred             CCCcc-ccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCC
Q 046036            2 NVPQE-IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP   80 (614)
Q Consensus         2 ~ip~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p   80 (614)
                      .+|+. |.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..   |.+++ +|++|+|++|.+++..+
T Consensus        65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~-~L~~L~L~~n~l~~l~~  140 (597)
T 3oja_B           65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVP-LLTVLVLERNDLSSLPR  140 (597)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT-TCCEEECCSSCCCCCCT
T ss_pred             CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH---HcCCC-CCCEEEeeCCCCCCCCH
Confidence            35554 567899999999999999888889999999999999999999877776   67777 89999999999986555


Q ss_pred             CCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc---------ccceEecCCCccccccchhhhccCCCCe
Q 046036           81 AGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL---------YSFQLNLAENNLTGNIPESLENLTSLQI  151 (614)
Q Consensus        81 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~---------~l~~L~L~~N~l~~~~~~~~~~l~~L~~  151 (614)
                      ..|.++++|++|+|++|.+++..|..|+.+++|++|++..+.+         +++.|++++|.+++     +...++|+.
T Consensus       141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~  215 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST-----LAIPIAVEE  215 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE-----EECCTTCSE
T ss_pred             HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc-----ccCCchhhe
Confidence            6678999999999999999988888899999999998533322         45566666666653     223456777


Q ss_pred             eecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccc
Q 046036          152 LNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMF  231 (614)
Q Consensus       152 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  231 (614)
                      |++++|.+... +..+  .++|+.|+|++|.+++  +..+..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+
T Consensus       216 L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          216 LDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             EECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             eeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence            77777777633 3222  3689999999999986  36789999999999999999999999999999999999999999


Q ss_pred             cccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCccc
Q 046036          232 QGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       232 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~  305 (614)
                      ++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++..  ...++++..+++.+|++.|.
T Consensus       291 ~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence            85 5777788999999999999999 57777888999999999999998764  45688999999999998885

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=308.84  Aligned_cols=165  Identities=25%  Similarity=0.247  Sum_probs=115.2

Q ss_pred             chhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCc-ccccCCCCCceeccCCccCCCCccccccCc
Q 046036          140 PESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP-LEVGSLSNTQELDFSEHMLSDEIPITLGNR  218 (614)
Q Consensus       140 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l  218 (614)
                      +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..|..+
T Consensus       366 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  444 (570)
T 2z63_A          366 SQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  444 (570)
T ss_dssp             EHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             cccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence            3444455555555555555553322 25666677777777777765544 456677777777777777777777777777


Q ss_pred             ccchHHhccCcccc-ccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC-ccccCCCceEE
Q 046036          219 SKFEHLLLGGNMFQ-GRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS-MSVFTNTSVIS  296 (614)
Q Consensus       219 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~  296 (614)
                      ++|+.|++++|.++ +.+|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++.+|. +..+++++.++
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence            77888888888776 46777777778888888888888777777777788888888888888777664 45667777888


Q ss_pred             EecCCCccc
Q 046036          297 IVGNGKLCG  305 (614)
Q Consensus       297 ~~~N~~~c~  305 (614)
                      +.+|++.|.
T Consensus       525 l~~N~~~~~  533 (570)
T 2z63_A          525 LHTNPWDCS  533 (570)
T ss_dssp             CCSSCBCCC
T ss_pred             ecCCcccCC
Confidence            888877764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.1e-32  Score=281.28  Aligned_cols=272  Identities=20%  Similarity=0.231  Sum_probs=231.7

Q ss_pred             CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCC
Q 046036           11 FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLI   90 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~   90 (614)
                      .+++.++++++.++ .+|..+.  ++|++|+|++|++++..+..   |.+++ +|++|+|++|.+++..|..|..+++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGD---FKNLK-NLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTT---TTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhh---hccCC-CCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            37899999999998 5676664  68999999999999777767   67777 899999999999988899999999999


Q ss_pred             EEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCC--CCCCCCC
Q 046036           91 QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGG--SIPKPSG  168 (614)
Q Consensus        91 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~  168 (614)
                      +|+|++|+++ .+|..+.  ++|++|+            +++|.+++..+..|.++++|++|++++|.+..  ..+..+.
T Consensus       104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  168 (330)
T 1xku_A          104 RLYLSKNQLK-ELPEKMP--KTLQELR------------VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ  168 (330)
T ss_dssp             EEECCSSCCS-BCCSSCC--TTCCEEE------------CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred             EEECCCCcCC-ccChhhc--ccccEEE------------CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc
Confidence            9999999998 5665554  6777666            99999998888889999999999999999963  6677788


Q ss_pred             CCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceE
Q 046036          169 LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL  248 (614)
Q Consensus       169 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  248 (614)
                      .+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..+..+++|+.|
T Consensus       169 ~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  245 (330)
T 1xku_A          169 GMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  245 (330)
T ss_dssp             GCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             CCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence            8999999999999998 4565543  889999999999998888899999999999999999998888889999999999


Q ss_pred             EccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCcc-------ccCCCceEEEecCCCcccCCC
Q 046036          249 NLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS-------VFTNTSVISIVGNGKLCGGVP  308 (614)
Q Consensus       249 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-------~~~~l~~~~~~~N~~~c~~~~  308 (614)
                      +|++|+++ .+|..+..+++|+.|++++|++++..+...       ....+..+++.+||..+..++
T Consensus       246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~  311 (330)
T 1xku_A          246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  311 (330)
T ss_dssp             ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence            99999999 778889999999999999999987655321       246677899999998776543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-32  Score=306.38  Aligned_cols=138  Identities=19%  Similarity=0.216  Sum_probs=115.0

Q ss_pred             CCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccC-CCCccccccCcccchHHhccCccccccCCccccCCCccc
Q 046036          168 GLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHML-SDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI  246 (614)
Q Consensus       168 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  246 (614)
                      ..+++++.+++++|.+.+..+..+..++.|+.|++++|.+ .+..|..|..+++|+.|+|++|+|++..|..|.++++|+
T Consensus       442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~  521 (635)
T 4g8a_A          442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  521 (635)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence            3445555666666666666666677778888888888874 445778899999999999999999998899999999999


Q ss_pred             eEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCc-ccc-CCCceEEEecCCCccc
Q 046036          247 DLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSM-SVF-TNTSVISIVGNGKLCG  305 (614)
Q Consensus       247 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~-~~l~~~~~~~N~~~c~  305 (614)
                      .|+|++|+|++..|..|..+++|+.|++++|++++.+|.. ..+ ++++.+++.+||+.|.
T Consensus       522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999988999999999999999999999988753 334 6799999999999984

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.2e-32  Score=279.15  Aligned_cols=280  Identities=20%  Similarity=0.232  Sum_probs=237.8

Q ss_pred             CCCccccCC------CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcc
Q 046036            2 NVPQEIGNL------FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQF   75 (614)
Q Consensus         2 ~ip~~~~~l------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l   75 (614)
                      ++|..+...      .+++.+++++|.++ .+|..+.  ++|++|+|++|.+++..|..   |.+++ +|++|+|++|++
T Consensus        18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~---~~~l~-~L~~L~L~~n~l   90 (332)
T 2ft3_A           18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDD---FKGLQ-HLYALVLVNNKI   90 (332)
T ss_dssp             -------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTT---TTTCT-TCCEEECCSSCC
T ss_pred             cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhH---hhCCC-CCcEEECCCCcc
Confidence            456655543      37999999999999 6777664  68999999999999877777   77787 999999999999


Q ss_pred             cccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecc
Q 046036           76 AGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLS  155 (614)
Q Consensus        76 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  155 (614)
                      ++..|..|.++++|++|+|++|.++ .+|..+.  ++|++|+            +++|++++..+..|..+++|++|+++
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~------------l~~n~i~~~~~~~~~~l~~L~~L~l~  155 (332)
T 2ft3_A           91 SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR------------IHDNRIRKVPKGVFSGLRNMNCIEMG  155 (332)
T ss_dssp             CEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE------------CCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred             CccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE------------CCCCccCccCHhHhCCCccCCEEECC
Confidence            9888999999999999999999998 5665554  6777776            99999998878889999999999999


Q ss_pred             cccCC--CCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccc
Q 046036          156 CNHLG--GSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG  233 (614)
Q Consensus       156 ~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  233 (614)
                      +|.++  +..+..+..+ +|++|++++|.+++ +|..+.  ++|++|++++|.+++..+..|..+++|+.|+|++|.+++
T Consensus       156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            99996  3677778888 99999999999995 665554  799999999999999888999999999999999999998


Q ss_pred             cCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCcc-------ccCCCceEEEecCCCcccC
Q 046036          234 RIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS-------VFTNTSVISIVGNGKLCGG  306 (614)
Q Consensus       234 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-------~~~~l~~~~~~~N~~~c~~  306 (614)
                      ..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+...       ....+..+++.+||+.+..
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            88889999999999999999999 788889999999999999999997765321       1456788999999987654


Q ss_pred             CC
Q 046036          307 VP  308 (614)
Q Consensus       307 ~~  308 (614)
                      ++
T Consensus       311 ~~  312 (332)
T 2ft3_A          311 VQ  312 (332)
T ss_dssp             SC
T ss_pred             cC
Confidence            43

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=314.79  Aligned_cols=294  Identities=21%  Similarity=0.211  Sum_probs=214.6

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccC-CcChhhhccccccccEEEccCCcccccCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGII-PPSLDSFTNLSTKLRILDAGGNQFAGDIP   80 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~l~~~L~~L~L~~N~l~~~~p   80 (614)
                      .||.   -.++|++|+|++|.|++..|..|.++++|++|+|++|.+.+.+ |..   |.+++ +|++|+|++|.+++..|
T Consensus        18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~---f~~L~-~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLP-NLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT---TSSCT-TCCEEECTTCCCCEECT
T ss_pred             CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH---hcCCC-CCCEEECCCCcCcccCH
Confidence            3565   3567888888888888777888888888888888888555454 555   66776 78888888888877777


Q ss_pred             CCCcCCCCCCEEeccCCcCcccCCcc--ccCCCCCCccccccc---------cc----ccceEecCCCccccccchhhhc
Q 046036           81 AGIPKYFNLIQLGLDRNCLAGSIPFS--IGKLQNLQKLNPLAT---------SL----YSFQLNLAENNLTGNIPESLEN  145 (614)
Q Consensus        81 ~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~l~~~---------~~----~l~~L~L~~N~l~~~~~~~~~~  145 (614)
                      ..|.++++|++|+|++|.+++.+|..  |+++++|++|++..+         .+    +|+.|+|++|.+++..+..|..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            78888888888888888887765554  778888888876221         11    5677778888888777777777


Q ss_pred             c--CCCCeeecccccCCCCCCCCCCCCCC------CCEEEcCCCCCccCCcccccC------------------------
Q 046036          146 L--TSLQILNLSCNHLGGSIPKPSGLFST------LSSIDFAHNNFNGSLPLEVGS------------------------  193 (614)
Q Consensus       146 l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~~~~~~~------------------------  193 (614)
                      +  ++|+.|+|++|.+.+..|..++.+++      |+.|++++|.+++..+..+..                        
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~  250 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH  250 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence            7  77888888888887777766655554      777888877776555543322                        


Q ss_pred             --------------CCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccC
Q 046036          194 --------------LSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTI  259 (614)
Q Consensus       194 --------------l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  259 (614)
                                    .++|+.|++++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++..
T Consensus       251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred             ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence                          156777777777777777777777777888888888777777777777777888888888777777


Q ss_pred             CcccCCCCCCCEEECcCCcCcccCCC-ccccCCCceEEEecCCC
Q 046036          260 PKELETLPFLENLNLSFNNFEGQLPS-MSVFTNTSVISIVGNGK  302 (614)
Q Consensus       260 p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~N~~  302 (614)
                      |..|..+++|+.|++++|.+++..+. +..+++++.+++.+|..
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence            77777777788888887777766553 45567777777777753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.6e-32  Score=280.25  Aligned_cols=274  Identities=22%  Similarity=0.273  Sum_probs=238.7

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .+|..+  .++|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..   |.+++ +|++|+|++|+++ .+|.
T Consensus        47 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~-~L~~L~L~~n~l~-~l~~  119 (332)
T 2ft3_A           47 AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA---FSPLR-KLQKLYISKNHLV-EIPP  119 (332)
T ss_dssp             SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG---STTCT-TCCEEECCSSCCC-SCCS
T ss_pred             ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH---hhCcC-CCCEEECCCCcCC-ccCc
Confidence            467766  378999999999999888999999999999999999999888887   77787 9999999999998 6776


Q ss_pred             CCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccc--cccchhhhccCCCCeeecccccC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLT--GNIPESLENLTSLQILNLSCNHL  159 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l  159 (614)
                      .+.  ++|++|++++|.+++..+..|..+++|+.|+            +++|.++  +..+..|..+ +|++|++++|++
T Consensus       120 ~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          120 NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE------------MGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE------------CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE------------CCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            665  7999999999999977777899999999888            9999996  4778888888 999999999999


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccc
Q 046036          160 GGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF  239 (614)
Q Consensus       160 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  239 (614)
                      ++ +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  260 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL  260 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence            95 666554  79999999999999888889999999999999999999988889999999999999999999 788889


Q ss_pred             cCCCccceEEccCCcCcccCCcccCC------CCCCCEEECcCCcCc--ccCCC-ccccCCCceEEEecCC
Q 046036          240 GSFKGTIDLNLSHNNLSGTIPKELET------LPFLENLNLSFNNFE--GQLPS-MSVFTNTSVISIVGNG  301 (614)
Q Consensus       240 ~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~ls~N~l~--~~~p~-~~~~~~l~~~~~~~N~  301 (614)
                      ..+++|+.|++++|++++..+..|..      .++|+.|++++|++.  +..|. +..+++++.+++.+|.
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            99999999999999999887777765      367999999999997  33332 4557778888888774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.4e-33  Score=305.47  Aligned_cols=111  Identities=22%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             CccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccc-cCCCC
Q 046036            4 PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAG-DIPAG   82 (614)
Q Consensus         4 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~-~~p~~   82 (614)
                      |..|.++++|++|+|++|++++..|++|+++++|++|+|++|++++..|..   |.+++ +|++|+|++|.+++ ..|..
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~-~L~~L~Ls~n~l~~~~~~~~  118 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW---FGPLS-SLKYLNLMGNPYQTLGVTSL  118 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH---HTTCT-TCCEEECTTCCCSSSCSSCS
T ss_pred             hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH---hccCC-CCcEEECCCCcccccchhhh
Confidence            567888888888888888888888888888888888888888888666655   56666 77788888887765 24556


Q ss_pred             CcCCCCCCEEeccCCcCcccCC-ccccCCCCCCcccc
Q 046036           83 IPKYFNLIQLGLDRNCLAGSIP-FSIGKLQNLQKLNP  118 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l  118 (614)
                      +.++++|++|++++|.+.+.+| ..|+++++|++|++
T Consensus       119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A          119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             hhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence            6677777777777766333333 45555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=314.40  Aligned_cols=292  Identities=18%  Similarity=0.154  Sum_probs=247.7

Q ss_pred             CCccccCCCCCCeeeecCCcccccC-CcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEI-PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .|..|.++++|++|+|++|.+.+.+ |++|+++++|++|+|++|.+++..|..   |.+++ +|++|+|++|.+++.+|.
T Consensus        40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~---~~~l~-~L~~L~Ls~n~l~~~~~~  115 (844)
T 3j0a_A           40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA---FQGLF-HLFELRLYFCGLSDAVLK  115 (844)
T ss_dssp             CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS---SCSCS-SCCCEECTTCCCSSCCST
T ss_pred             ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH---ccCCc-ccCEeeCcCCCCCccccc
Confidence            4778999999999999999655444 889999999999999999999888888   77787 899999999999876665


Q ss_pred             C--CcCCCCCCEEeccCCcCcccCC-ccccCCCCCCccccccccc--------------ccceEecCCCccccccchhhh
Q 046036           82 G--IPKYFNLIQLGLDRNCLAGSIP-FSIGKLQNLQKLNPLATSL--------------YSFQLNLAENNLTGNIPESLE  144 (614)
Q Consensus        82 ~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~~~~--------------~l~~L~L~~N~l~~~~~~~~~  144 (614)
                      .  |.++++|++|+|++|.+++..+ ..|+++++|++|++..+.+              +++.|+|++|.+.+..|..+.
T Consensus       116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~  195 (844)
T 3j0a_A          116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG  195 (844)
T ss_dssp             TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred             CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence            5  8899999999999999987755 5789999999998833322              577899999999988887777


Q ss_pred             ccCC------CCeeecccccCCCCCCCCCCC--------------------------------------CCCCCEEEcCC
Q 046036          145 NLTS------LQILNLSCNHLGGSIPKPSGL--------------------------------------FSTLSSIDFAH  180 (614)
Q Consensus       145 ~l~~------L~~L~L~~N~l~~~~p~~~~~--------------------------------------l~~L~~L~Ls~  180 (614)
                      .+.+      |+.|++++|.+++..+..+..                                      .++|+.|++++
T Consensus       196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~  275 (844)
T 3j0a_A          196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH  275 (844)
T ss_dssp             SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred             hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence            7665      999999999877655543221                                      26799999999


Q ss_pred             CCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCC
Q 046036          181 NNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIP  260 (614)
Q Consensus       181 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  260 (614)
                      |.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+
T Consensus       276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred             CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence            99998888889999999999999999998888899999999999999999998889999999999999999999998888


Q ss_pred             cccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          261 KELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       261 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      ..|..+++|+.|++++|.+++...    ++++..+++.+|..
T Consensus       356 ~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l  393 (844)
T 3j0a_A          356 QTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKL  393 (844)
T ss_dssp             SCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCC
T ss_pred             hhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCc
Confidence            889999999999999999886432    56677777777754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=7.9e-32  Score=274.88  Aligned_cols=274  Identities=18%  Similarity=0.238  Sum_probs=238.3

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .+|..+.  ++|+.|+|++|++++..+..|+++++|++|+|++|++++..|..   |.+++ +|++|+|++|+++ .+|.
T Consensus        45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~-~L~~L~Ls~n~l~-~l~~  117 (330)
T 1xku_A           45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA---FAPLV-KLERLYLSKNQLK-ELPE  117 (330)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCT-TCCEEECCSSCCS-BCCS
T ss_pred             ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH---hcCCC-CCCEEECCCCcCC-ccCh
Confidence            3566553  68999999999999888889999999999999999999888888   77787 9999999999998 6776


Q ss_pred             CCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCcccc--ccchhhhccCCCCeeecccccC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTG--NIPESLENLTSLQILNLSCNHL  159 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l  159 (614)
                      .+.  ++|++|++++|.+++..+..|.++++|+.|+            +++|.++.  ..+..|..+++|++|++++|.+
T Consensus       118 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          118 KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE------------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE------------CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             hhc--ccccEEECCCCcccccCHhHhcCCccccEEE------------CCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            665  7999999999999988888899999999888            99999963  7788899999999999999999


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccc
Q 046036          160 GGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF  239 (614)
Q Consensus       160 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  239 (614)
                      + .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.++ .+|..+
T Consensus       184 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          184 T-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             C-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             c-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            8 5666554  89999999999999888999999999999999999999888889999999999999999999 788899


Q ss_pred             cCCCccceEEccCCcCcccCCcccCC------CCCCCEEECcCCcCccc--CC-CccccCCCceEEEecC
Q 046036          240 GSFKGTIDLNLSHNNLSGTIPKELET------LPFLENLNLSFNNFEGQ--LP-SMSVFTNTSVISIVGN  300 (614)
Q Consensus       240 ~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~ls~N~l~~~--~p-~~~~~~~l~~~~~~~N  300 (614)
                      ..+++|++|++++|++++..+..|..      .+.++.|++++|++...  .| ....+..++.+++.+|
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            99999999999999999887777754      37899999999999742  22 3344567777888776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.7e-32  Score=305.06  Aligned_cols=265  Identities=22%  Similarity=0.188  Sum_probs=145.7

Q ss_pred             cccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcC
Q 046036            6 EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK   85 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~   85 (614)
                      .|+++++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..   |.+++ +|++|+|++|++++..|..|++
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~l~-~L~~L~L~~n~l~~~~~~~~~~  119 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT---FAFCT-NLTELHLMSNSIQKIKNNPFVK  119 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT---TTTCT-TCSEEECCSSCCCCCCSCTTTT
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh---hccCC-CCCEEECCCCccCccChhHccc
Confidence            4666667777777777776666666666777777777777766444444   55555 6777777777776555566777


Q ss_pred             CCCCCEEeccCCcCcccCCccccCCCCCCccccccccc--------------ccceEecCCCccccccchhhhcc-----
Q 046036           86 YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL--------------YSFQLNLAENNLTGNIPESLENL-----  146 (614)
Q Consensus        86 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~--------------~l~~L~L~~N~l~~~~~~~~~~l-----  146 (614)
                      +++|++|+|++|.+++..|..++++++|++|++..+.+              +++.|++++|.+++..|..|..+     
T Consensus       120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  199 (680)
T 1ziw_A          120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG  199 (680)
T ss_dssp             CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred             cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhh
Confidence            77777777777777766666667777777776522111              45566666666665555544432     


Q ss_pred             ----------------------CCCCeeecccccCCCCCCCCCCCCCC--CCEEEcCCCCCccCCcccccCCCCCceecc
Q 046036          147 ----------------------TSLQILNLSCNHLGGSIPKPSGLFST--LSSIDFAHNNFNGSLPLEVGSLSNTQELDF  202 (614)
Q Consensus       147 ----------------------~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  202 (614)
                                            ++|+.|++++|.+++..|..+..++.  |+.|++++|.+++..|..|..+++|++|++
T Consensus       200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (680)
T 1ziw_A          200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL  279 (680)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence                                  23344444444444444444444432  555555555555555555555555555555


Q ss_pred             CCccCCCCccccccCcccchHHhccCccccc-----cCCc----cccCCCccceEEccCCcCcccCCcccCCCCCCCEEE
Q 046036          203 SEHMLSDEIPITLGNRSKFEHLLLGGNMFQG-----RIPP----FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLN  273 (614)
Q Consensus       203 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  273 (614)
                      ++|.+++..|..|..+++|+.|++++|...+     .+|.    .|..+++|+.|++++|++++..+..|..+++|+.|+
T Consensus       280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  359 (680)
T 1ziw_A          280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS  359 (680)
T ss_dssp             CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred             CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence            5555555444444444444444444332221     1111    333444444444444444444444444444333333


Q ss_pred             C
Q 046036          274 L  274 (614)
Q Consensus       274 l  274 (614)
                      +
T Consensus       360 L  360 (680)
T 1ziw_A          360 L  360 (680)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.1e-32  Score=301.58  Aligned_cols=294  Identities=20%  Similarity=0.177  Sum_probs=249.4

Q ss_pred             CccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCC
Q 046036            4 PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI   83 (614)
Q Consensus         4 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~   83 (614)
                      |..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.|++..+..   |.+++ +|++|+|++|.+++..|..|
T Consensus        92 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~l~-~L~~L~Ls~N~l~~~~~~~~  167 (597)
T 3oja_B           92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI---FHNTP-KLTTLSMSNNNLERIEDDTF  167 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT-TCCEEECCSSCCCBCCTTTT
T ss_pred             hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH---hccCC-CCCEEEeeCCcCCCCChhhh
Confidence            458999999999999999999999999999999999999999999655555   67787 99999999999998888899


Q ss_pred             cCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc-------ccceEecCCCccccccchhhhccCCCCeeeccc
Q 046036           84 PKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL-------YSFQLNLAENNLTGNIPESLENLTSLQILNLSC  156 (614)
Q Consensus        84 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~-------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  156 (614)
                      ..+++|++|+|++|.+++..   ++.+++|+.|++..+.+       .++.|++++|.++...+..   .++|+.|+|++
T Consensus       168 ~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~  241 (597)
T 3oja_B          168 QATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQH  241 (597)
T ss_dssp             TTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCS
T ss_pred             hcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc---CCCCCEEECCC
Confidence            99999999999999998653   56678888888744433       7899999999998554432   37899999999


Q ss_pred             ccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCC
Q 046036          157 NHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP  236 (614)
Q Consensus       157 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  236 (614)
                      |.+++  +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|
T Consensus       242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~  317 (597)
T 3oja_B          242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVE  317 (597)
T ss_dssp             SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred             CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccC
Confidence            99986  4678899999999999999999999999999999999999999986 5777788999999999999999 678


Q ss_pred             ccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCcccCCCCcccccc
Q 046036          237 PFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVPELRLLSC  315 (614)
Q Consensus       237 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~~~~~~~~c  315 (614)
                      ..+..+++|+.|+|++|.+++. +  +..+++|+.|++++|++++.... ..+..+....+.+++..|+.........|
T Consensus       318 ~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~~c  392 (597)
T 3oja_B          318 RNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDYQLEHGLC  392 (597)
T ss_dssp             GGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred             cccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcchhccCCcc
Confidence            8899999999999999999965 3  67889999999999999876321 22344444456788889986554443334

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.7e-31  Score=274.52  Aligned_cols=273  Identities=22%  Similarity=0.305  Sum_probs=151.8

Q ss_pred             ccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCC
Q 046036            7 IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY   86 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l   86 (614)
                      +..+++|++|+|++|.+++..+  |..+++|++|+|++|.++. +| .   +.+++ +|++|++++|.+++ ++. +..+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~---~~~l~-~L~~L~l~~n~i~~-~~~-~~~l  131 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-A---LQNLT-NLRELYLNEDNISD-ISP-LANL  131 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-G---GTTCT-TCSEEECTTSCCCC-CGG-GTTC
T ss_pred             hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-H---HcCCC-cCCEEECcCCcccC-chh-hccC
Confidence            5556666666666666663322  6666666666666666653 22 2   45555 66666666666653 222 5566


Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCccccccccc----------ccceEecCCCccccccchhhhccCCCCeeeccc
Q 046036           87 FNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL----------YSFQLNLAENNLTGNIPESLENLTSLQILNLSC  156 (614)
Q Consensus        87 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~----------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  156 (614)
                      ++|++|++++|.....++ .+..+++|++|++..+.+          +++.|++++|.+++..+  +..+++|+.|++++
T Consensus       132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV  208 (347)
T ss_dssp             TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeeccc
Confidence            666666666664443332 356666666665422211          45555555555553322  55555555555555


Q ss_pred             ccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCC
Q 046036          157 NHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP  236 (614)
Q Consensus       157 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p  236 (614)
                      |.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.  
T Consensus       209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--  280 (347)
T 4fmz_A          209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--  280 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             CCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--
Confidence            55553322  4555566666666666653322  55566666666666666543  3455566666666666666532  


Q ss_pred             ccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCC
Q 046036          237 PFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNG  301 (614)
Q Consensus       237 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~  301 (614)
                      +.+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..| ...+++++.+++.+|+
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence            345556666666666666665555556666666666666666665544 4555566666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=8.6e-32  Score=281.24  Aligned_cols=269  Identities=22%  Similarity=0.165  Sum_probs=216.1

Q ss_pred             CCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCC
Q 046036            9 NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN   88 (614)
Q Consensus         9 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~   88 (614)
                      .+++++.|++++|.++...+..|..+++|++|+|++|.+++..+..   |.+++ +|++|+|++|.+++..|..|.++++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA---FAYAH-TIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT---TTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh---ccCCC-CcCEEECCCCCCCcCCHHHhcCCCC
Confidence            4689999999999999776667899999999999999999877777   77787 9999999999999888888999999


Q ss_pred             CCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCC
Q 046036           89 LIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG  168 (614)
Q Consensus        89 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  168 (614)
                      |++|+|++|.++...+..|+++++|++|+            |++|++++..+..|..+++|++|++++|++++..   +.
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~------------L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~  183 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLS------------MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS  183 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEE------------CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GG
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEE------------CCCCccCccChhhccCCCCCCEEECCCCcCCccc---cc
Confidence            99999999999965555679999999888            8888888777777888888888888888877432   33


Q ss_pred             CCCCC-------------------CEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCc
Q 046036          169 LFSTL-------------------SSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGN  229 (614)
Q Consensus       169 ~l~~L-------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N  229 (614)
                      .+++|                   ++|++++|.++.. |.  ...++|+.|++++|.+++.  ..+..+++|++|+|++|
T Consensus       184 ~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n  258 (390)
T 3o6n_A          184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN  258 (390)
T ss_dssp             GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             cccccceeecccccccccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCC
Confidence            34444                   4555555555422 22  2246788888888888764  56778888888888888


Q ss_pred             cccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          230 MFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       230 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      .+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|++++|++++.++....+++++.+++.+|+.
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          259 ELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             CCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             cCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence            8888878888888888888888888885 56666778888888888888887666667788888888888864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.7e-31  Score=291.82  Aligned_cols=163  Identities=17%  Similarity=0.182  Sum_probs=148.1

Q ss_pred             ccceEecCCCccccccchhhhccCCCCeeecccccCCCCCC-CCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceecc
Q 046036          124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIP-KPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDF  202 (614)
Q Consensus       124 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  202 (614)
                      ++++|++++|.+++..+. +..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus       374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence            456677777777755444 9999999999999999997766 56889999999999999999999999999999999999


Q ss_pred             CCccCC-CCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcc
Q 046036          203 SEHMLS-DEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       203 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  281 (614)
                      ++|.++ +.+|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++++
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            999998 5789999999999999999999999889999999999999999999999888899999999999999999999


Q ss_pred             cCCCcc
Q 046036          282 QLPSMS  287 (614)
Q Consensus       282 ~~p~~~  287 (614)
                      .+|..+
T Consensus       533 ~~~~~~  538 (570)
T 2z63_A          533 SCPRID  538 (570)
T ss_dssp             CTTTTH
T ss_pred             CCcchH
Confidence            988654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=6.1e-32  Score=272.65  Aligned_cols=252  Identities=23%  Similarity=0.237  Sum_probs=217.4

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCccccc--CCCCCcCCCCCC
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGD--IPAGIPKYFNLI   90 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~--~p~~~~~l~~L~   90 (614)
                      -+.++.+++.++ .+|..+.  ++|++|+|++|+++...+..   |.+++ +|++|+|++|.++..  .|..+..+++|+
T Consensus         9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~---~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~   81 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGV---FDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLK   81 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTT---TTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred             CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhH---hhccc-cCCEEECCCCccCcccCcccccccccccC
Confidence            367889999998 6676554  68999999999998444444   67777 899999999998733  356677889999


Q ss_pred             EEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccc-hhhhccCCCCeeecccccCCCCCCCCCCC
Q 046036           91 QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP-ESLENLTSLQILNLSCNHLGGSIPKPSGL  169 (614)
Q Consensus        91 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  169 (614)
                      +|+|++|.++ .+|..+..+++|++|+            +++|++++..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus        82 ~L~Ls~n~i~-~l~~~~~~l~~L~~L~------------l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  148 (306)
T 2z66_A           82 YLDLSFNGVI-TMSSNFLGLEQLEHLD------------FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  148 (306)
T ss_dssp             EEECCSCSEE-EEEEEEETCTTCCEEE------------CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred             EEECCCCccc-cChhhcCCCCCCCEEE------------CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence            9999999998 5777788889988887            99999987665 67899999999999999999888888999


Q ss_pred             CCCCCEEEcCCCCCcc-CCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceE
Q 046036          170 FSTLSSIDFAHNNFNG-SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL  248 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  248 (614)
                      +++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..|..+++|+.|+|++|.+++..+..+..+++|+.|
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            9999999999999986 578889999999999999999998888899999999999999999998777789999999999


Q ss_pred             EccCCcCcccCCcccCCCC-CCCEEECcCCcCcccCC
Q 046036          249 NLSHNNLSGTIPKELETLP-FLENLNLSFNNFEGQLP  284 (614)
Q Consensus       249 ~Ls~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~~~~p  284 (614)
                      +|++|++++..|..+..++ +|+.|++++|++++..+
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9999999999999999985 89999999999987654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=3.2e-32  Score=297.80  Aligned_cols=177  Identities=18%  Similarity=0.196  Sum_probs=135.8

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      +||+.+.  ++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..   |.+++ +|++|+|++|++++..|.
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~l~-~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA---FYSLG-SLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT---TTTCT-TCCEEECTTSCCCSCCHH
T ss_pred             cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh---ccccc-cCCEEECCCCccCccCHH
Confidence            4777664  79999999999999999999999999999999999999888888   77787 999999999999977777


Q ss_pred             CCcCCCCCCEEeccCCcCccc-CCccccCCCCCCcccccccc---------c----ccceEecCCCccccccchhhhccC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGS-IPFSIGKLQNLQKLNPLATS---------L----YSFQLNLAENNLTGNIPESLENLT  147 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~~~---------~----~l~~L~L~~N~l~~~~~~~~~~l~  147 (614)
                      .|+++++|++|+|++|.+++. .|..++++++|++|++..+.         +    ++++|++++|++++..|..+..++
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  172 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR  172 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred             HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence            799999999999999999863 57789999999999852211         1    345555666666555555555566


Q ss_pred             CCCeeecccccCCCCCCCC-CCCCCCCCEEEcCCCCCcc
Q 046036          148 SLQILNLSCNHLGGSIPKP-SGLFSTLSSIDFAHNNFNG  185 (614)
Q Consensus       148 ~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~  185 (614)
                      +|++|++++|.+. .+|.. +..+++|++|++++|.+++
T Consensus       173 ~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          173 DIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             EEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence            6666666655554 22222 2345667777777776665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=1.9e-30  Score=276.40  Aligned_cols=250  Identities=22%  Similarity=0.257  Sum_probs=154.6

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      ...++.+++.++ .+|..+.  ++|++|+|++|+|++..|..   |.+++ +|++|+|++|++++..|..|.++++|++|
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADT---FRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT---TTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHH---cCCCC-CCCEEECCCCccCCcChhhccCcccCCEE
Confidence            345666666666 4554443  45666666666666655555   45555 66666666666666556666666666666


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccc-cCCCCCCCCCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCN-HLGGSIPKPSGLFS  171 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~  171 (614)
                      +|++|++++..+..|..+++|++|+            |++|+|+...+..|.++++|++|+|++| .+....+..+..++
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~------------L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  196 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELW------------LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF  196 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEE------------CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred             ECCCCcCCccChhhhcccCCCCEEE------------CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence            6666666655555566666666555            6666666555556666666666666663 33322333466666


Q ss_pred             CCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEcc
Q 046036          172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLS  251 (614)
Q Consensus       172 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  251 (614)
                      +|++|+|++|.+++ +| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|+|+
T Consensus       197 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          197 NLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             TCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            66666666666663 23 35566666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcCcccCCcccCCCCCCCEEECcCCcCcccC
Q 046036          252 HNNLSGTIPKELETLPFLENLNLSFNNFEGQL  283 (614)
Q Consensus       252 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  283 (614)
                      +|+|++..+..|..+++|+.|++++|++.+..
T Consensus       275 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             SSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             CCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            66666555555666666666666666665543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.7e-32  Score=279.21  Aligned_cols=277  Identities=18%  Similarity=0.115  Sum_probs=166.9

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      ++.....++++|.++ .+|..+.  ++|++|+|++|++++..+..   |.+++ +|++|+|++|++++..|..|.++++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSD---LQRCV-NLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTT---TTTCT-TCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHH---hccCC-CCCEEECCCCccCccCHhhcCCCCCC
Confidence            444455666666666 4555443  36667777777666554445   55555 66667777776666556666666677


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccc-hhhhccCCCCeeecccc-cCCCCCCCCC
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP-ESLENLTSLQILNLSCN-HLGGSIPKPS  167 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~p~~~  167 (614)
                      ++|+|++|++++..+..|+++++|++|+            |++|++++..+ ..|..+++|++|++++| .+.+..+..+
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~------------L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  170 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLN------------LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF  170 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEE------------CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEE------------CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence            7777777766644444466666666665            66666664333 35666666777777666 3554445566


Q ss_pred             CCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCcccc---CCCc
Q 046036          168 GLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG---SFKG  244 (614)
Q Consensus       168 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~  244 (614)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+.   ....
T Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~  250 (353)
T 2z80_A          171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL  250 (353)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred             cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccch
Confidence            6666666677776666666666666666666777766666544333344566666666776666654443322   2345


Q ss_pred             cceEEccCCcCcc----cCCcccCCCCCCCEEECcCCcCcccCCCc-cccCCCceEEEecCCCccc
Q 046036          245 TIDLNLSHNNLSG----TIPKELETLPFLENLNLSFNNFEGQLPSM-SVFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       245 L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~  305 (614)
                      ++.++|+++.+++    .+|..+..+++|+.|++++|+++..++.. ..+++++.+++.+|++.|.
T Consensus       251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            5566666666554    24555666666666666666666443332 4556666666666666553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.2e-31  Score=285.55  Aligned_cols=276  Identities=22%  Similarity=0.211  Sum_probs=228.9

Q ss_pred             CeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEe
Q 046036           14 QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLG   93 (614)
Q Consensus        14 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~   93 (614)
                      ++|++++|.++ .+|..+.  ++|++|+|++|.+++..|..   |.+++ +|++|+|++|++++..|..|.++++|++|+
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~---~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   75 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSD---ILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLD   75 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHH---HTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhh---ccccc-cccEEecCCCccCCcChHHhhcccCCCEEe
Confidence            58999999999 6787776  89999999999999777666   77887 999999999999988899999999999999


Q ss_pred             ccCCcCcccCCccccCCCCCCcccccc---------ccc----ccceEecCCCccccccchhhhccCCC--Ceeeccccc
Q 046036           94 LDRNCLAGSIPFSIGKLQNLQKLNPLA---------TSL----YSFQLNLAENNLTGNIPESLENLTSL--QILNLSCNH  158 (614)
Q Consensus        94 L~~N~l~~~~p~~~~~l~~L~~L~l~~---------~~~----~l~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~  158 (614)
                      |++|+++ .+|..  .+++|++|++..         ..+    ++++|+|++|++++   ..|..+++|  ++|++++|.
T Consensus        76 Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           76 LSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred             cCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence            9999999 56665  899999998621         222    56677777777664   345666666  777777777


Q ss_pred             C--CCCCCCCCCCCC-----------------------------------------------------------------
Q 046036          159 L--GGSIPKPSGLFS-----------------------------------------------------------------  171 (614)
Q Consensus       159 l--~~~~p~~~~~l~-----------------------------------------------------------------  171 (614)
                      +  .+..|..+..+.                                                                 
T Consensus       150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred             ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence            7  556666665533                                                                 


Q ss_pred             ------------------CCCEEEcCCCCCccCCcccc------------------------------------------
Q 046036          172 ------------------TLSSIDFAHNNFNGSLPLEV------------------------------------------  191 (614)
Q Consensus       172 ------------------~L~~L~Ls~N~l~~~~~~~~------------------------------------------  191 (614)
                                        +|++|++++|.+++.+|..+                                          
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence                              78888888888887777655                                          


Q ss_pred             -----------cCCCCCceeccCCccCCCCccccccCcccchHHhccCccccc--cCCccccCCCccceEEccCCcCccc
Q 046036          192 -----------GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG--RIPPFFGSFKGTIDLNLSHNNLSGT  258 (614)
Q Consensus       192 -----------~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (614)
                                 ..+++|++|++++|.+++..|..+..+++|++|+|++|++++  .+|..++.+++|++|++++|++++.
T Consensus       310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  389 (520)
T 2z7x_B          310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD  389 (520)
T ss_dssp             ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred             CCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence                       677899999999999999899999999999999999999986  5667899999999999999999985


Q ss_pred             CCc-ccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCc
Q 046036          259 IPK-ELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKL  303 (614)
Q Consensus       259 ~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~  303 (614)
                      +|. .+..+++|+.|++++|++++.+|... .++++.+++.+|...
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK  434 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGGGSC-CTTCCEEECCSSCCC
T ss_pred             cccchhccCccCCEEECcCCCCCcchhhhh-cccCCEEECCCCccc
Confidence            665 58889999999999999988766432 278999999999654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=274.90  Aligned_cols=247  Identities=21%  Similarity=0.198  Sum_probs=121.9

Q ss_pred             CcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcc
Q 046036           37 LTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL  116 (614)
Q Consensus        37 L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  116 (614)
                      .+.++.+++.++ .+|..+   .   .+++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---S---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL  117 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---C---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred             CCEEEeCCCCcC-cCCCCC---C---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence            344555555554 344331   1   144555555555554444455555555555555555554444455555555544


Q ss_pred             cccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCC-CCccCCcccccCCC
Q 046036          117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN-NFNGSLPLEVGSLS  195 (614)
Q Consensus       117 ~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  195 (614)
                      +            |++|+|+...+..|..+++|++|+|++|+++...+..+..+++|++|+|++| .++...+..|.+++
T Consensus       118 ~------------L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          118 E------------LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             E------------CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             E------------CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            4            5555555444444555555555555555555444444555555555555552 22222223445555


Q ss_pred             CCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECc
Q 046036          196 NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLS  275 (614)
Q Consensus       196 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls  275 (614)
                      +|++|+|++|.++.. | .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus       186 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (440)
T 3zyj_A          186 NLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA  263 (440)
T ss_dssp             SCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred             ccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence            555555555555422 2 24455555555555555554445555555555555555555555555555555555555555


Q ss_pred             CCcCcccCCC-ccccCCCceEEEecCCCcc
Q 046036          276 FNNFEGQLPS-MSVFTNTSVISIVGNGKLC  304 (614)
Q Consensus       276 ~N~l~~~~p~-~~~~~~l~~~~~~~N~~~c  304 (614)
                      +|++++..+. +..+++++.+++.+||+.|
T Consensus       264 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          264 HNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            5555544433 2334455555555555555

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.97  E-value=4.6e-32  Score=269.85  Aligned_cols=175  Identities=21%  Similarity=0.328  Sum_probs=124.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..+||||||++|||.++|+..  ...++|.++++|+.|+                  |+|||||+++.+||+|||+|+
T Consensus       103 ~~~~~iVmEy~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  180 (307)
T 3omv_A          103 KDNLAIVTQWCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLAT  180 (307)
T ss_dssp             SSSCEEEEECCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCB
T ss_pred             CCeEEEEEEcCCCCCHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCce
Confidence            45689999999999999999864  2469999999999888                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ........     ......+||+.||| |+     ...++.|+|||||||++|||+||+.||.+....            
T Consensus       181 ~~~~~~~~-----~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~------------  243 (307)
T 3omv_A          181 VKSRWSGS-----QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR------------  243 (307)
T ss_dssp             C-----------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH------------
T ss_pred             ecccCCcc-----eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH------------
Confidence            77543221     23455789999988 87     235899999999999999999999999753221            


Q ss_pred             CCChHHHHHHHHhcCc-CCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          529 PESVMELVYSRLLQGV-DKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                           +.+...+.... .+.....+      .++...+.+++..||+.+|++||||.||++.|+.++..+
T Consensus       244 -----~~~~~~~~~~~~~p~~~~~~------~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l  302 (307)
T 3omv_A          244 -----DQIIFMVGRGYASPDLSKLY------KNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL  302 (307)
T ss_dssp             -----HHHHHHHHTTCCCCCSTTSC------TTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHhcCCCCCCccccc------ccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence                 11111111111 11111000      122234556788999999999999999999998876543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=5.9e-31  Score=267.61  Aligned_cols=236  Identities=17%  Similarity=0.207  Sum_probs=164.5

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      .++++.|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..   +.+++ +|++|+|++|.++ .+|..+.++++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~---~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L  152 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT---MQQFA-GLETLTLARNPLR-ALPASIASLNRL  152 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSC---GGGGT-TCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHH---HhccC-CCCEEECCCCccc-cCcHHHhcCcCC
Confidence            356667777777766 55666666667777777777666 56665   45555 6666777777666 566666666677


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCC
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL  169 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  169 (614)
                      ++|+|++|++.+.+|..++..                           ..+..|..+++|++|+|++|+++ .+|..++.
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~---------------------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~  204 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLAST---------------------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIAN  204 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEE---------------------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred             CEEECCCCCCccccChhHhhc---------------------------cchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence            777776666666666544320                           01112445777777777777777 66666777


Q ss_pred             CCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEE
Q 046036          170 FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLN  249 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  249 (614)
                      +++|++|+|++|.+++ +|..+..+++|++|++++|.+.+.+|..|+.+++|+.|+|++|.+.+.+|..+..+++|+.|+
T Consensus       205 l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            7777777777777773 555677777777777777777777777777777777777777777777787788888888888


Q ss_pred             ccCCcCcccCCcccCCCCCCCEEECcCCcCcc
Q 046036          250 LSHNNLSGTIPKELETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       250 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  281 (614)
                      |++|++.+.+|..+..+++|+.+++..|.+..
T Consensus       284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             CCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            88888888888888888888888887776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=2.8e-30  Score=282.95  Aligned_cols=280  Identities=17%  Similarity=0.170  Sum_probs=224.8

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      +...+++++++|.+++ +|..+.  ++|++|+|++|.+++..|..   |.+++ +|++|+|++|++++..|..|.++++|
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~---~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L  102 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD---ISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDL  102 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG---TTTCT-TCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh---hccCC-CccEEECCCCCCCcCCHHHhCCCCCC
Confidence            3455899999999995 777665  79999999999999777777   77887 99999999999998889999999999


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCcccccc---------ccc----ccceEecCCCccccccchhhhccCCC--Ceeec
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA---------TSL----YSFQLNLAENNLTGNIPESLENLTSL--QILNL  154 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~---------~~~----~l~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L  154 (614)
                      ++|+|++|+++ .+|..  .+++|++|++..         ..+    ++++|+|++|++++.   .+..+++|  ++|++
T Consensus       103 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          103 EYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL  176 (562)
T ss_dssp             CEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred             CEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence            99999999999 56665  899999998611         122    566667777766642   34444444  77777


Q ss_pred             ccccC--CCCCCCCCCCCC-------------------------------------------------------------
Q 046036          155 SCNHL--GGSIPKPSGLFS-------------------------------------------------------------  171 (614)
Q Consensus       155 ~~N~l--~~~~p~~~~~l~-------------------------------------------------------------  171 (614)
                      ++|.+  ++..|..+..+.                                                             
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred             ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence            77766  555555444332                                                             


Q ss_pred             --------------------CCCEEEcCCCCCccCCcccc----------------------------------------
Q 046036          172 --------------------TLSSIDFAHNNFNGSLPLEV----------------------------------------  191 (614)
Q Consensus       172 --------------------~L~~L~Ls~N~l~~~~~~~~----------------------------------------  191 (614)
                                          +|++|++++|.+++.+|..+                                        
T Consensus       257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L  336 (562)
T 3a79_B          257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML  336 (562)
T ss_dssp             EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred             cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence                                67788888888888777655                                        


Q ss_pred             -------------cCCCCCceeccCCccCCCCccccccCcccchHHhccCcccccc--CCccccCCCccceEEccCCcCc
Q 046036          192 -------------GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGR--IPPFFGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       192 -------------~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~  256 (614)
                                   ..+++|++|++++|.+++..|..+..+++|+.|+|++|++++.  +|..+..+++|+.|++++|+++
T Consensus       337 ~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             EccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence                         6788999999999999999999999999999999999999963  3467899999999999999999


Q ss_pred             ccCC-cccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCc
Q 046036          257 GTIP-KELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKL  303 (614)
Q Consensus       257 ~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~  303 (614)
                      +.+| ..+..+++|+.|++++|++++.+|.... ++++.+++.+|...
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~  463 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM  463 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc
Confidence            8455 4688999999999999999987765322 78999999999643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=3e-30  Score=275.91  Aligned_cols=273  Identities=25%  Similarity=0.341  Sum_probs=152.6

Q ss_pred             cccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcC
Q 046036            6 EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK   85 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~   85 (614)
                      .+..+++|++|+|++|.+++..|  |+++++|++|++++|.+++..|     +.+++ +|++|+|++|.+++. +. +.+
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----~~~l~-~L~~L~L~~n~l~~~-~~-~~~  132 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-----LANLT-NLTGLTLFNNQITDI-DP-LKN  132 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-----GTTCT-TCCEEECCSSCCCCC-GG-GTT
T ss_pred             chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-----hcCCC-CCCEEECCCCCCCCC-hH-HcC
Confidence            36667777778887777775443  7777777777777777774332     45555 677777777777643 22 666


Q ss_pred             CCCCCEEeccCCcCcccCC-------------------ccccCCCCCCccccccccc----------ccceEecCCCccc
Q 046036           86 YFNLIQLGLDRNCLAGSIP-------------------FSIGKLQNLQKLNPLATSL----------YSFQLNLAENNLT  136 (614)
Q Consensus        86 l~~L~~L~L~~N~l~~~~p-------------------~~~~~l~~L~~L~l~~~~~----------~l~~L~L~~N~l~  136 (614)
                      +++|++|++++|.+++...                   ..+.++++|+.|++..+.+          +++.|++++|.++
T Consensus       133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~  212 (466)
T 1o6v_A          133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS  212 (466)
T ss_dssp             CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccc
Confidence            6667777666666653211                   1134444555555422211          4556666666666


Q ss_pred             cccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCcccccc
Q 046036          137 GNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLG  216 (614)
Q Consensus       137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~  216 (614)
                      +..|  +..+++|++|++++|++++ + ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +.
T Consensus       213 ~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~  284 (466)
T 1o6v_A          213 DITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA  284 (466)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred             cccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence            4443  5555666666666666553 2 234555566666666666654333  5555556666666665554333  55


Q ss_pred             CcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEE
Q 046036          217 NRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVIS  296 (614)
Q Consensus       217 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~  296 (614)
                      .+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|+.|++++|.+++. +....+++++.++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~  359 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLS  359 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEE
T ss_pred             CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEe
Confidence            55555555555555553322  4555555555555555554433  44555555555555555543 3344444555555


Q ss_pred             EecCC
Q 046036          297 IVGNG  301 (614)
Q Consensus       297 ~~~N~  301 (614)
                      +.+|.
T Consensus       360 l~~n~  364 (466)
T 1o6v_A          360 AGHNQ  364 (466)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            55543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=2.4e-31  Score=273.90  Aligned_cols=266  Identities=20%  Similarity=0.197  Sum_probs=225.9

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      +||..+.  ++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..   |.+++ +|++|+|++|++++..+.
T Consensus        45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~-~L~~L~Ls~n~l~~~~~~  118 (353)
T 2z80_A           45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS---FSSLG-SLEHLDLSYNYLSNLSSS  118 (353)
T ss_dssp             SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT---TTTCT-TCCEEECCSSCCSSCCHH
T ss_pred             ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh---cCCCC-CCCEEECCCCcCCcCCHh
Confidence            4677664  58999999999999888889999999999999999999888887   77787 999999999999965555


Q ss_pred             CCcCCCCCCEEeccCCcCcccCC-ccccCCCCCCcccccccccccceEecCCC-ccccccchhhhccCCCCeeecccccC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIP-FSIGKLQNLQKLNPLATSLYSFQLNLAEN-NLTGNIPESLENLTSLQILNLSCNHL  159 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  159 (614)
                      .|.++++|++|+|++|++++..+ ..+..+++|++|+            +++| .++...+..|.++++|++|++++|++
T Consensus       119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~------------l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR------------VGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE------------EEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE------------CCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            58999999999999999995444 4789999999888            9999 47777788999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCcccccc---CcccchHHhccCccccc---
Q 046036          160 GGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLG---NRSKFEHLLLGGNMFQG---  233 (614)
Q Consensus       160 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~---  233 (614)
                      ++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+.   ....++.++|+++.+.+   
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l  266 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL  266 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence            988899999999999999999999754444456689999999999999986655443   34556677777777664   


Q ss_pred             -cCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC
Q 046036          234 -RIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS  285 (614)
Q Consensus       234 -~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  285 (614)
                       .+|.++..+++|+.|+|++|+++...+..|..+++|+.|++++|++++.+|.
T Consensus       267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence             4778899999999999999999954444468999999999999999998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=3.9e-30  Score=286.08  Aligned_cols=142  Identities=24%  Similarity=0.243  Sum_probs=127.4

Q ss_pred             hhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCc-cCCcccccCCCCCceeccCCccCCCCccccccCcccc
Q 046036          143 LENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFN-GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKF  221 (614)
Q Consensus       143 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L  221 (614)
                      |..+++|+.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            445566666777777787777888889999999999999854 4678889999999999999999999999999999999


Q ss_pred             hHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCC-CCCCEEECcCCcCcccCC
Q 046036          222 EHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETL-PFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       222 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~p  284 (614)
                      ++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+..+ ++|+.|++++|++++...
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999999999889999999999999999999999999999998 689999999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.5e-31  Score=269.77  Aligned_cols=238  Identities=20%  Similarity=0.179  Sum_probs=213.7

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCccc--CCcChhhhccccccccEEEccCCcccccC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGI--IPPSLDSFTNLSTKLRILDAGGNQFAGDI   79 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~~l~~~L~~L~L~~N~l~~~~   79 (614)
                      .+|..+  .++|++|+|++|.++...+..|.++++|++|+|++|.++..  .|..   +..++ +|++|+|++|.++ .+
T Consensus        21 ~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~~-~L~~L~Ls~n~i~-~l   93 (306)
T 2z66_A           21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS---DFGTT-SLKYLDLSFNGVI-TM   93 (306)
T ss_dssp             SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH---HHSCS-CCCEEECCSCSEE-EE
T ss_pred             cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc---ccccc-ccCEEECCCCccc-cC
Confidence            466655  36899999999999976666789999999999999999843  2444   55676 9999999999998 57


Q ss_pred             CCCCcCCCCCCEEeccCCcCcccCC-ccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeeccccc
Q 046036           80 PAGIPKYFNLIQLGLDRNCLAGSIP-FSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNH  158 (614)
Q Consensus        80 p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  158 (614)
                      |..+..+++|++|++++|.+++..+ ..+..+++|++|+            +++|.+++..+..|..+++|++|+|++|.
T Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD------------ISHTHTRVAFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE------------CTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred             hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE------------CCCCcCCccchhhcccCcCCCEEECCCCc
Confidence            7779999999999999999996655 5788899998887            99999999999999999999999999999


Q ss_pred             CCC-CCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCc
Q 046036          159 LGG-SIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPP  237 (614)
Q Consensus       159 l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  237 (614)
                      +++ .+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+++..|.
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            986 5789999999999999999999988899999999999999999999988888899999999999999999999999


Q ss_pred             cccCCC-ccceEEccCCcCccc
Q 046036          238 FFGSFK-GTIDLNLSHNNLSGT  258 (614)
Q Consensus       238 ~~~~l~-~L~~L~Ls~N~l~~~  258 (614)
                      .+..++ +|++|+|++|++++.
T Consensus       242 ~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          242 ELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SCCCCCTTCCEEECTTCCEECS
T ss_pred             HHHhhhccCCEEEccCCCeecc
Confidence            999985 999999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=3.3e-30  Score=275.63  Aligned_cols=268  Identities=26%  Similarity=0.375  Sum_probs=197.6

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      +++|+.|++++|.++. +| .+..+++|++|+|++|.+++..|     +.+++ +|++|++++|.+++..+  +.++++|
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L  114 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-----LKNLT-KLVDILMNNNQIADITP--LANLTNL  114 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----GTTCT-TCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-----hhccc-cCCEEECCCCccccChh--hcCCCCC
Confidence            5678888888888873 45 37778888888888888874432     55666 78888888888875444  7788888


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCccccccccc-------------------------------ccceEecCCCccccc
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL-------------------------------YSFQLNLAENNLTGN  138 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~-------------------------------~l~~L~L~~N~l~~~  138 (614)
                      ++|+|++|.+++..+  +..+++|++|++..+.+                               +++.|++++|.+++.
T Consensus       115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence            888888888875433  77788888777621111                               467788888887743


Q ss_pred             cchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCc
Q 046036          139 IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNR  218 (614)
Q Consensus       139 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l  218 (614)
                        ..+..+++|++|++++|.+.+..|  ++.+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+
T Consensus       193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l  264 (466)
T 1o6v_A          193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL  264 (466)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence              347778888888888888875544  66778888888888888743  357778888888888888876654  7778


Q ss_pred             ccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEe
Q 046036          219 SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIV  298 (614)
Q Consensus       219 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~  298 (614)
                      ++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|++++..| ...+++++.+++.
T Consensus       265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~  339 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFY  339 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECC
T ss_pred             CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECC
Confidence            888888888888875433  7778888888888888886544  6778888888888888887665 5677788888888


Q ss_pred             cCCC
Q 046036          299 GNGK  302 (614)
Q Consensus       299 ~N~~  302 (614)
                      +|..
T Consensus       340 ~n~l  343 (466)
T 1o6v_A          340 NNKV  343 (466)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            7753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.4e-30  Score=264.93  Aligned_cols=221  Identities=23%  Similarity=0.315  Sum_probs=195.3

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+            |++|.++ .+|..|
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~------------Ls~n~l~-~lp~~l  146 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT------------LARNPLR-ALPASI  146 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEE------------EESCCCC-CCCGGG
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEE------------CCCCccc-cCcHHH
Confidence            7788888888887 67777888888888888888888 7788888888888777            8888888 678888


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCC---------CCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCcccc
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGL---------FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPIT  214 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  214 (614)
                      .++++|++|+|++|++.+.+|..+..         +++|++|+|++|.++ .+|..++.+++|++|+|++|.+++ +|..
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~  224 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPA  224 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGG
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchh
Confidence            88888888888888888788877654         999999999999999 889999999999999999999996 5667


Q ss_pred             ccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC-ccccCCCc
Q 046036          215 LGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS-MSVFTNTS  293 (614)
Q Consensus       215 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~  293 (614)
                      +..+++|++|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|..+..+++|+.|++++|++.+.+|. +..++++.
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999998885 56788888


Q ss_pred             eEEEecCC
Q 046036          294 VISIVGNG  301 (614)
Q Consensus       294 ~~~~~~N~  301 (614)
                      .+.+..|.
T Consensus       305 ~l~l~~~~  312 (328)
T 4fcg_A          305 IILVPPHL  312 (328)
T ss_dssp             EEECCGGG
T ss_pred             EEeCCHHH
Confidence            88877663

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=4.9e-30  Score=273.18  Aligned_cols=236  Identities=21%  Similarity=0.223  Sum_probs=214.6

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .||..+.  ++|+.|+|++|+|++..|+.|.++++|++|+|++|+|++..|..   |.+++ +|++|+|++|++++..+.
T Consensus        68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~  141 (452)
T 3zyi_A           68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA---FNGLA-SLNTLELFDNWLTVIPSG  141 (452)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---TTTCT-TCCEEECCSSCCSBCCTT
T ss_pred             ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh---ccCcc-cCCEEECCCCcCCccChh
Confidence            4666553  68999999999999999999999999999999999999888888   77787 999999999999977777


Q ss_pred             CCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCC-CccccccchhhhccCCCCeeecccccCC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAE-NNLTGNIPESLENLTSLQILNLSCNHLG  160 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (614)
                      .|..+++|++|+|++|+++...+..|.++++|+.|+            |++ |.+....+..|..+++|++|+|++|+++
T Consensus       142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~------------l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD------------LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE------------CCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe------------CCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            799999999999999999987778999999999888            998 4555455567999999999999999999


Q ss_pred             CCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCcccc
Q 046036          161 GSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFG  240 (614)
Q Consensus       161 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  240 (614)
                      + +| .+..+++|+.|+|++|.|++..|..|.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|.
T Consensus       210 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          210 D-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             S-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             c-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence            4 45 488999999999999999999999999999999999999999999999999999999999999999988888899


Q ss_pred             CCCccceEEccCCcCcc
Q 046036          241 SFKGTIDLNLSHNNLSG  257 (614)
Q Consensus       241 ~l~~L~~L~Ls~N~l~~  257 (614)
                      .+++|+.|+|++|.+.-
T Consensus       288 ~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          288 PLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TCTTCCEEECCSSCEEC
T ss_pred             cccCCCEEEccCCCcCC
Confidence            99999999999999873

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=1.7e-30  Score=259.29  Aligned_cols=251  Identities=20%  Similarity=0.160  Sum_probs=167.2

Q ss_pred             cEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccc
Q 046036           38 TYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN  117 (614)
Q Consensus        38 ~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  117 (614)
                      ++++.+++.++ .+|..   +   +++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+
T Consensus        14 ~~~~c~~~~l~-~ip~~---~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   86 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVG---I---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (285)
T ss_dssp             CEEECCSSCCS-SCCTT---C---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCcCCcc-cCCcC---C---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence            45566666665 34433   1   12566666666666655555566666666666666666655566666666666555


Q ss_pred             ccccccccceEecCCCc-cccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCC
Q 046036          118 PLATSLYSFQLNLAENN-LTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSN  196 (614)
Q Consensus       118 l~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  196 (614)
                                  |++|. ++...|..|..+++|++|+|++|.+++..|..+..+++|++|++++|.+++..+..|..+++
T Consensus        87 ------------l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  154 (285)
T 1ozn_A           87 ------------LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (285)
T ss_dssp             ------------CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ------------CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence                        66665 55555666666666777777777666655666666677777777777776555555667777


Q ss_pred             CceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcC
Q 046036          197 TQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSF  276 (614)
Q Consensus       197 L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~  276 (614)
                      |++|++++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus       155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence            77777777777766556677777777777777777777788888888888888888888877667788888888999999


Q ss_pred             CcCcccCCCccccCCCceEEEecCCCcccCC
Q 046036          277 NNFEGQLPSMSVFTNTSVISIVGNGKLCGGV  307 (614)
Q Consensus       277 N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~  307 (614)
                      |++.+..+..+....+.......+...|..+
T Consensus       235 N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          235 NPWVCDCRARPLWAWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             SCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred             CCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence            8888765543333333334445666666644

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=4.9e-30  Score=272.18  Aligned_cols=252  Identities=23%  Similarity=0.243  Sum_probs=227.2

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCE
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ   91 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~   91 (614)
                      ..+.++.+++.++ .+|..+.  ++++.|+|++|++++..+..   |.+++ +|++|+|++|.+++..+..|.++++|++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~---~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNS---FKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTT---TSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHH---hhCCC-CCCEEECCCCcCCccChhhccCCccCCE
Confidence            4678999999999 6777665  68999999999999888877   77887 9999999999999888889999999999


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccc-cCCCCCCCCCCCC
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCN-HLGGSIPKPSGLF  170 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l  170 (614)
                      |+|++|+++...+..|..+++|++|+            |++|.|+...+..|..+++|++|+|++| .+....+..+..+
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~------------L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  184 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELW------------LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL  184 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEE------------CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             EECCCCcCCeeCHhHhhccccCceee------------CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence            99999999977777899999999888            9999999888889999999999999995 4554445578899


Q ss_pred             CCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEc
Q 046036          171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNL  250 (614)
Q Consensus       171 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  250 (614)
                      ++|++|+|++|.++ .+| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|+|
T Consensus       185 ~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          185 SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             SSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred             cccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence            99999999999998 555 4889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCcccCCcccCCCCCCCEEECcCCcCcccCC
Q 046036          251 SHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       251 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      ++|++++..+..|..+++|+.|+|++|++.+...
T Consensus       263 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          263 AHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             CCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            9999998888889999999999999999987654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=2.8e-29  Score=266.59  Aligned_cols=266  Identities=21%  Similarity=0.197  Sum_probs=132.2

Q ss_pred             ccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCC
Q 046036            7 IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY   86 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l   86 (614)
                      |+++++|++|+|++|++++. |  ++.+++|++|+|++|++++. |     +.+++ +|++|++++|++++ +|  +..+
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-----~~~l~-~L~~L~L~~N~l~~-l~--~~~l  126 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-----VTPLT-KLTYLNCDTNKLTK-LD--VSQN  126 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-----CTTCT-TCCEEECCSSCCSC-CC--CTTC
T ss_pred             hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-----cCCCC-cCCEEECCCCcCCe-ec--CCCC
Confidence            44444444444444444432 2  44444444444444444432 1     33343 45555555555543 22  4445


Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCcccccccc------c----ccceEecCCCccccccchhhhccCCCCeeeccc
Q 046036           87 FNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS------L----YSFQLNLAENNLTGNIPESLENLTSLQILNLSC  156 (614)
Q Consensus        87 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~------~----~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  156 (614)
                      ++|++|++++|++++. +  ++.+++|++|++..+.      +    +++.|++++|++++ +|  +..+++|+.|++++
T Consensus       127 ~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~  200 (457)
T 3bz5_A          127 PLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDT  200 (457)
T ss_dssp             TTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCS
T ss_pred             CcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcC
Confidence            5555555555555432 1  4445555555442221      0    44555555555554 22  45555555555555


Q ss_pred             ccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcc-------cchHHhccCc
Q 046036          157 NHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRS-------KFEHLLLGGN  229 (614)
Q Consensus       157 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N  229 (614)
                      |++++.   .++.+++|+.|++++|++++ +|  ++.+++|+.|++++|++++..+..+..+.       +|+.|++++|
T Consensus       201 N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n  274 (457)
T 3bz5_A          201 NNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN  274 (457)
T ss_dssp             SCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred             CcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCC
Confidence            555532   24555555555555555554 33  45555555555555555554443443333       3444555555


Q ss_pred             cccccCCccccCCCccceEEccCCcCcccCCc--------ccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCC
Q 046036          230 MFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK--------ELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNG  301 (614)
Q Consensus       230 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~  301 (614)
                      .+.+.+|  ++.+++|+.|++++|.+.+.+|.        .+..+++|+.|++++|++++. + +..+++++.+++.+|.
T Consensus       275 ~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          275 TQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             TTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSC
T ss_pred             ccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c-cccCCcCcEEECCCCC
Confidence            5444443  34456666666666655444432        134445666666666666663 2 5556666666666664

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.97  E-value=3.1e-31  Score=265.03  Aligned_cols=172  Identities=16%  Similarity=0.217  Sum_probs=130.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCcee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVL  438 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NIL  438 (614)
                      |..++..+||||||++|||.++|+.+..             ...++|..+++|+.||                  |+|||
T Consensus        98 ~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NIL  177 (308)
T 4gt4_A           98 VTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVL  177 (308)
T ss_dssp             ECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceE
Confidence            4556778999999999999999975321             2469999999999988                  99999


Q ss_pred             eCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccc
Q 046036          439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMF  514 (614)
Q Consensus       439 ld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~  514 (614)
                      ||+++.+||+|||+|+.+...+..     ...+..+||+.||| |+  ...++.++|||||||++|||+| |+.||.+..
T Consensus       178 l~~~~~~Ki~DFGlar~~~~~~~~-----~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~  252 (308)
T 4gt4_A          178 VYDKLNVKISDLGLFREVYAADYY-----KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS  252 (308)
T ss_dssp             ECGGGCEEECCSCCBCGGGGGGCB-----CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC
T ss_pred             ECCCCCEEECCcccceeccCCCce-----eEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999977544321     23445789999987 87  7889999999999999999999 899997532


Q ss_pred             ccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                      .                 .+++.....+...+.|.          ++...+.+++..||+.+|++||||+||+++|+.+
T Consensus       253 ~-----------------~~~~~~i~~~~~~~~p~----------~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          253 N-----------------QDVVEMIRNRQVLPCPD----------DCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             H-----------------HHHHHHHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             H-----------------HHHHHHHHcCCCCCCcc----------cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            1                 11222222221111111          2223455788899999999999999999999754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.9e-29  Score=259.22  Aligned_cols=256  Identities=23%  Similarity=0.347  Sum_probs=219.8

Q ss_pred             CCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCC
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      +|. +.++++|++|+|++|.+++ +| .|..+++|++|+|++|.+++. +.    +..++ +|++|++++|.....++ .
T Consensus        81 ~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~----~~~l~-~L~~L~l~~n~~~~~~~-~  150 (347)
T 4fmz_A           81 ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP----LANLT-KMYSLNLGANHNLSDLS-P  150 (347)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG----GTTCT-TCCEEECTTCTTCCCCG-G
T ss_pred             chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh----hccCC-ceeEEECCCCCCccccc-c
Confidence            555 8899999999999999995 34 699999999999999999843 32    66777 99999999997654444 4


Q ss_pred             CcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc----------ccceEecCCCccccccchhhhccCCCCee
Q 046036           83 IPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL----------YSFQLNLAENNLTGNIPESLENLTSLQIL  152 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~----------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L  152 (614)
                      +..+++|++|++++|.+.+..+  +..+++|+.|++..+.+          +++.|++++|.+++..+  +..+++|++|
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L  226 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSL  226 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEE
Confidence            8899999999999999985544  88999999998844333          68899999999996655  8999999999


Q ss_pred             ecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCcccc
Q 046036          153 NLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ  232 (614)
Q Consensus       153 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  232 (614)
                      ++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.++
T Consensus       227 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             EccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence            999999995443  88999999999999999864  4689999999999999999875  46889999999999999999


Q ss_pred             ccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCc
Q 046036          233 GRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE  280 (614)
Q Consensus       233 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  280 (614)
                      +..+..++.+++|+.|++++|++++..|  +..+++|+.|++++|+++
T Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8889999999999999999999997766  888999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=2.6e-30  Score=257.95  Aligned_cols=253  Identities=19%  Similarity=0.165  Sum_probs=215.2

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      -+.++.+++.++ .+|..+  .++|++|+|++|.+++..+..   |.+++ +|++|+|++|.+++..|..|..+++|++|
T Consensus        13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~---~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   85 (285)
T 1ozn_A           13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAAS---FRACR-NLTILWLHSNVLARIDAAAFTGLALLEQL   85 (285)
T ss_dssp             SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTT---TTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHH---cccCC-CCCEEECCCCccceeCHhhcCCccCCCEE
Confidence            367899999998 566554  468999999999999777777   67777 89999999999998888899999999999


Q ss_pred             eccCCc-CcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCC
Q 046036           93 GLDRNC-LAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS  171 (614)
Q Consensus        93 ~L~~N~-l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  171 (614)
                      +|++|. ++...|..|..+++|++|+            |++|++++..+..|..+++|++|+|++|++++..+..+..++
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  153 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLH------------LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG  153 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEE------------CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEE------------CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC
Confidence            999997 8877788899999999887            999999988888899999999999999999977777788999


Q ss_pred             CCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEcc
Q 046036          172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLS  251 (614)
Q Consensus       172 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  251 (614)
                      +|++|++++|.+++..+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus       154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            99999999999997777779999999999999999998889999999999999999999998777789999999999999


Q ss_pred             CCcCcccCCcccCCCCCCCEEECcCCcCcccCCC
Q 046036          252 HNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS  285 (614)
Q Consensus       252 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  285 (614)
                      +|++....+.. .-...++.+..+.+.+.+..|.
T Consensus       234 ~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          234 DNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             SSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             CCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence            99998543321 1112344555777888777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.97  E-value=5.1e-32  Score=273.77  Aligned_cols=251  Identities=22%  Similarity=0.191  Sum_probs=149.5

Q ss_pred             cCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCc-ccCCcChh----hhccccccccEEEccCCcccccCCCC
Q 046036            8 GNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLH-GIIPPSLD----SFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~----~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      +..++|+.|++++|.+  .+|..+...  |+.|+|++|.++ ..+|..+.    .+.+++ +|++|+|++|++++.+|..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHH
Confidence            3455666666666666  455555443  666667666663 33443311    011454 6666777777766666665


Q ss_pred             C--cCCCCCCEEeccCCcCcccCCccccCC-----CCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecc
Q 046036           83 I--PKYFNLIQLGLDRNCLAGSIPFSIGKL-----QNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLS  155 (614)
Q Consensus        83 ~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  155 (614)
                      +  ..+++|++|+|++|++++. |..++.+     ++|++|+            |++|++++..|..|+.+++|++|+|+
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~------------L~~N~l~~~~~~~~~~l~~L~~L~Ls  181 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLS------------IAQAHSLNFSCEQVRVFPALSTLDLS  181 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEE------------EESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEE------------eeCCCCccchHHHhccCCCCCEEECC
Confidence            4  6666677777777766655 5555555     5555555            66666666666666666666666666


Q ss_pred             cccCCCC--CCCCC--CCCCCCCEEEcCCCCCcc--CCc-ccccCCCCCceeccCCccCCCCcc-ccccCcccchHHhcc
Q 046036          156 CNHLGGS--IPKPS--GLFSTLSSIDFAHNNFNG--SLP-LEVGSLSNTQELDFSEHMLSDEIP-ITLGNRSKFEHLLLG  227 (614)
Q Consensus       156 ~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~--~~~-~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~~L~L~  227 (614)
                      +|++.+.  .+..+  ..+++|++|++++|.|++  .++ ..+..+++|++|++++|.+++..| ..+..+++|++|+|+
T Consensus       182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred             CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence            6665543  12222  566666666666666662  111 223455666666666666666553 344456666666666


Q ss_pred             CccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcc
Q 046036          228 GNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       228 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  281 (614)
                      +|.++ .+|..+.  ++|++|+|++|+|++. |. +..+++|+.|++++|++++
T Consensus       262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            66666 5555544  6666666666666654 44 6666666666666666654

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.96  E-value=1.2e-30  Score=263.16  Aligned_cols=175  Identities=19%  Similarity=0.309  Sum_probs=124.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC------------CCcccCHHHHHHHHhhC------------------CCceee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE------------ATRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~------------~~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      |..++..+||||||++|||.++|+...            ....++|.++++|+.|+                  |+||||
T Consensus       112 ~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl  191 (329)
T 4aoj_A          112 CTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLV  191 (329)
T ss_dssp             ECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEE
T ss_pred             EEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEE
Confidence            455678899999999999999997542            12469999999999988                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      |+++.+||+|||+|+........     ...+..+||+.||| |+  ...++.++|||||||++|||+| |+.||.....
T Consensus       192 ~~~~~~Ki~DFGla~~~~~~~~~-----~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~  266 (329)
T 4aoj_A          192 GQGLVVKIGDFGMSRDIYSTDYY-----RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN  266 (329)
T ss_dssp             ETTTEEEECCCC---------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH
T ss_pred             CCCCcEEEcccccceeccCCCcc-----eecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH
Confidence            99999999999999977554321     23345789999988 87  7789999999999999999999 8999975321


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                                       .+.++....+...+.|.          .+...+.+++..||+.+|++||||+||+++|+.+.+
T Consensus       267 -----------------~~~~~~i~~g~~~~~p~----------~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~  319 (329)
T 4aoj_A          267 -----------------TEAIDCITQGRELERPR----------ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ  319 (329)
T ss_dssp             -----------------HHHHHHHHHTCCCCCCT----------TCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHcCCCCCCcc----------cccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence                             12222222211111111          112345567889999999999999999999998875


Q ss_pred             H
Q 046036          596 V  596 (614)
Q Consensus       596 ~  596 (614)
                      .
T Consensus       320 ~  320 (329)
T 4aoj_A          320 A  320 (329)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.96  E-value=6.2e-31  Score=261.69  Aligned_cols=175  Identities=20%  Similarity=0.309  Sum_probs=133.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC----------CCcccCHHHHHHHHhhC------------------CCceeeCC
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE----------ATRRLDLAEGLKIAVDI------------------PSNVLLDY  441 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~----------~~~~l~~~~~~~ia~~i------------------~~NILld~  441 (614)
                      |..++..++|||||++|||.++|+..+          ....++|.++.+|+.|+                  |+|||+|+
T Consensus        84 ~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~  163 (299)
T 4asz_A           84 CVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGE  163 (299)
T ss_dssp             ECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG
T ss_pred             EeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECC
Confidence            455678899999999999999997532          23579999999999988                  99999999


Q ss_pred             CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccC
Q 046036          442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADC  517 (614)
Q Consensus       442 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~  517 (614)
                      ++.+||+|||+|+........     .......||+.||| |.  ...++.|+|||||||++|||+| |+.||.+...  
T Consensus       164 ~~~~Ki~DFGla~~~~~~~~~-----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~--  236 (299)
T 4asz_A          164 NLLVKIGDFGMSRDVYSTDYY-----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--  236 (299)
T ss_dssp             GGCEEECCCSCHHHHTGGGCE-----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH--
T ss_pred             CCcEEECCcccceecCCCCce-----eecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--
Confidence            999999999999976544321     22334679999988 87  7789999999999999999999 8999975322  


Q ss_pred             chHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          518 LSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                                     .+++.....+...+.|.          .+...+.+++..||+.+|++||||+||+..|+++.+.
T Consensus       237 ---------------~~~~~~i~~~~~~~~p~----------~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          237 ---------------NEVIECITQGRVLQRPR----------TCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             ---------------HHHHHHHHHTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---------------HHHHHHHHcCCCCCCCc----------cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence                           12222222221111111          1223455688899999999999999999999988654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=3.3e-29  Score=266.03  Aligned_cols=258  Identities=19%  Similarity=0.171  Sum_probs=208.4

Q ss_pred             CCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCC
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      -|..++++++|++|++++|.+++. | .|+.+++|++|+|++|++++. |     +..++ +|++|+|++|++++. |  
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~-----~~~l~-~L~~L~Ls~N~l~~~-~--  101 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D-----LSQNT-NLTYLACDSNKLTNL-D--  101 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C-----CTTCT-TCSEEECCSSCCSCC-C--
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c-----cccCC-CCCEEECcCCCCcee-e--
Confidence            355788899999999999999965 5 699999999999999999964 3     56777 999999999999864 4  


Q ss_pred             CcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCC
Q 046036           83 IPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS  162 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  162 (614)
                      ++.+++|++|+|++|++++ +|  ++.+++|++|+            +++|++++. +  ++.+++|++|++++|+..+.
T Consensus       102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~------------l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~  163 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN------------CARNTLTEI-D--VSHNTQLTELDCHLNKKITK  163 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE------------CTTSCCSCC-C--CTTCTTCCEEECTTCSCCCC
T ss_pred             cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE------------CCCCcccee-c--cccCCcCCEEECCCCCcccc
Confidence            8999999999999999996 44  88888888887            999998864 3  78889999999999966555


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCC
Q 046036          163 IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSF  242 (614)
Q Consensus       163 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  242 (614)
                      +  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  ++.+
T Consensus       164 ~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l  232 (457)
T 3bz5_A          164 L--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPL  232 (457)
T ss_dssp             C--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTC
T ss_pred             c--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cccc
Confidence            5  47788899999999999986 44  78888999999999998875   47888899999999999986 55  7888


Q ss_pred             CccceEEccCCcCcccCCcccCCCC-------CCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          243 KGTIDLNLSHNNLSGTIPKELETLP-------FLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       243 ~~L~~L~Ls~N~l~~~~p~~~~~l~-------~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      ++|+.|++++|++++..+..+..+.       +|+.|++++|.+.+.+| ...+++++.+++.+|+.
T Consensus       233 ~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTT
T ss_pred             CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcc
Confidence            8999999999999876555444443       44555666666555555 34567777788877763

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.96  E-value=3e-30  Score=262.49  Aligned_cols=173  Identities=21%  Similarity=0.272  Sum_probs=130.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCceeeCC
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVLLDY  441 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NILld~  441 (614)
                      ++..++|||||++|||.++|+....             ...++|..++.|+.||                  |+|||+|+
T Consensus       141 ~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~  220 (353)
T 4ase_A          141 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE  220 (353)
T ss_dssp             TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCC
Confidence            4568999999999999999975321             2458999999988887                  99999999


Q ss_pred             CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccC
Q 046036          442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADC  517 (614)
Q Consensus       442 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~  517 (614)
                      ++.+||+|||+|+.+..+...     ...+..+||+.||| |.  ...++.++|||||||++|||+| |+.||.+.... 
T Consensus       221 ~~~vKi~DFGlar~~~~~~~~-----~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~-  294 (353)
T 4ase_A          221 KNVVKICDFGLARDIYKDPDY-----VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-  294 (353)
T ss_dssp             GGCEEECCCGGGSCTTTCTTS-----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-
T ss_pred             CCCEEECcchhhhhcccCCCc-----eeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHH-
Confidence            999999999999977654332     33456789999988 87  7789999999999999999998 89999753221 


Q ss_pred             chHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          518 LSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                                      +.+...+........++         .+...+.+++..||+.+|++||||.||++.|+.+.+.
T Consensus       295 ----------------~~~~~~i~~g~~~~~p~---------~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~  348 (353)
T 4ase_A          295 ----------------EEFCRRLKEGTRMRAPD---------YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  348 (353)
T ss_dssp             ----------------HHHHHHHHHTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHcCCCCCCCc---------cCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence                            11112222221111111         1122345677899999999999999999999887654

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.96  E-value=4.4e-30  Score=257.30  Aligned_cols=188  Identities=16%  Similarity=0.136  Sum_probs=128.6

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------------CCceeeCCCCCeeec
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------------~~NILld~~~~~kl~  448 (614)
                      ..+||||||++|||.++|+..    .++|..+.+|+.++                          |+|||||+++.+||+
T Consensus        75 ~~~lV~Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~  150 (303)
T 3hmm_A           75 QLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA  150 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred             EEEEEecCCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEE
Confidence            579999999999999999853    48999998887766                          899999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc-cC-------CCCccCceeehhHHHHHHHhCCCCCCcccccCch
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VA-------RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLS  519 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~-------~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~  519 (614)
                      |||+|+........   ........+||++||| |+ .+       .++.|+||||||||+|||+||+.|+.........
T Consensus       151 DFGla~~~~~~~~~---~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p  227 (303)
T 3hmm_A          151 DLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP  227 (303)
T ss_dssp             CCTTCEEEETTTTE---ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCT
T ss_pred             eCCCCccccCCCCc---eeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCcccccccc
Confidence            99999977544321   0122345689999987 87 22       4678999999999999999999887543221110


Q ss_pred             HHHHHHhhCCC-ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          520 LHNFCEMALPE-SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       520 l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                      ..   ...... ...+.......+...+..+.+..    ..++...+.+++.+||+.+|++||||.||+++|+++.++
T Consensus       228 ~~---~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~----~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          228 YY---DLVPSDPSVEEMRKVVCEQKLRPNIPNRWQ----SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             TT---TTSCSSCCHHHHHHHHTTSCCCCCCCGGGG----SSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ch---hcccccchHHHHHHHHhcccCCCCCCcccc----chHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            00   000011 12222222223333222222111    124556677899999999999999999999999988754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=1.6e-30  Score=262.78  Aligned_cols=249  Identities=22%  Similarity=0.233  Sum_probs=213.9

Q ss_pred             CCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCccc-ccCCCCCc-------CCCCCCEEeccCCcCcc
Q 046036           30 HLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFA-GDIPAGIP-------KYFNLIQLGLDRNCLAG  101 (614)
Q Consensus        30 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~  101 (614)
                      .++..++|++|++++|.+  .+|..+..      .|+.|+|++|.++ ..+|..+.       ++++|++|+|++|++++
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  109 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG  109 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence            356678899999999999  67876432      4788999999994 45666555       78999999999999999


Q ss_pred             cCCccc--cCCCCCCcccccccccccceEecCCCccccccchhhhcc-----CCCCeeecccccCCCCCCCCCCCCCCCC
Q 046036          102 SIPFSI--GKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENL-----TSLQILNLSCNHLGGSIPKPSGLFSTLS  174 (614)
Q Consensus       102 ~~p~~~--~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~  174 (614)
                      .+|..+  +.+++|++|+            |++|++++. |..+..+     ++|++|+|++|++++..|..++.+++|+
T Consensus       110 ~~~~~~~~~~l~~L~~L~------------Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILN------------LRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEE------------EESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             hhHHHHHHhcCCCccEEE------------ccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            999886  8899999887            999999987 8888888     9999999999999988889999999999


Q ss_pred             EEEcCCCCCccC--Ccccc--cCCCCCceeccCCccCCCC---ccccccCcccchHHhccCccccccCC-ccccCCCccc
Q 046036          175 SIDFAHNNFNGS--LPLEV--GSLSNTQELDFSEHMLSDE---IPITLGNRSKFEHLLLGGNMFQGRIP-PFFGSFKGTI  246 (614)
Q Consensus       175 ~L~Ls~N~l~~~--~~~~~--~~l~~L~~L~ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~  246 (614)
                      +|++++|++.+.  .+..+  ..+++|++|++++|.+++.   ....+..+++|+.|+|++|.+++.+| ..+..+++|+
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            999999998865  34444  8899999999999999842   22345678999999999999998775 5677789999


Q ss_pred             eEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCc
Q 046036          247 DLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKL  303 (614)
Q Consensus       247 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~  303 (614)
                      +|+|++|+|+ .+|..+.  ++|+.|++++|++++. |....+++++.+++.+|+..
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            9999999999 7777776  8999999999999988 66888899999999999753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=4.1e-30  Score=275.48  Aligned_cols=215  Identities=21%  Similarity=0.205  Sum_probs=118.4

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCc
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK  115 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  115 (614)
                      +|++|+|++|.+++..|..   |..++ +|++|+|++|.+++..|  +..+++|++|+|++|.+++..+     .++|+.
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~---~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAAD---LAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGG---GTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             CccEEEeeCCcCCCCCHHH---HhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            5555555555555444444   44444 55555555555554333  5555555555555555553221     144444


Q ss_pred             ccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCccccc-CC
Q 046036          116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVG-SL  194 (614)
Q Consensus       116 L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l  194 (614)
                      |+            |++|.|++..+.   .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.|++..|..+. .+
T Consensus       104 L~------------L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l  168 (487)
T 3oja_A          104 LH------------AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS  168 (487)
T ss_dssp             EE------------CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             EE------------CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence            43            555555544332   235555555555555555555555555555666666655555555554 45


Q ss_pred             CCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEEC
Q 046036          195 SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNL  274 (614)
Q Consensus       195 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  274 (614)
                      ++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++. |+.+..+++|+.|+|++|.|++ +|..+..+++|+.|++
T Consensus       169 ~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred             CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence            566666666666554422  22356666666666666643 3336666666677777776664 4555666666777777


Q ss_pred             cCCcCc
Q 046036          275 SFNNFE  280 (614)
Q Consensus       275 s~N~l~  280 (614)
                      ++|++.
T Consensus       245 ~~N~l~  250 (487)
T 3oja_A          245 RGNGFH  250 (487)
T ss_dssp             TTCCBC
T ss_pred             CCCCCc
Confidence            777666

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.9e-28  Score=260.07  Aligned_cols=270  Identities=21%  Similarity=0.226  Sum_probs=169.4

Q ss_pred             CCCCccccCCCCCCeeeecCCcccccCCcCCCCCCCC-------------cEEecccccCcccCCcChhhhc--------
Q 046036            1 GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKL-------------TYLSLFSNNLHGIIPPSLDSFT--------   59 (614)
Q Consensus         1 g~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~p~~~~~~~--------   59 (614)
                      |+||++|+++++|++|++++|.+++.+|..++.+++|             ++|++++|++++ +|.....+.        
T Consensus        24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~~~~L~~L~l~~n~  102 (454)
T 1jl5_A           24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPPHLESLVASCNS  102 (454)
T ss_dssp             ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSCCTTCSEEECCSSC
T ss_pred             hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCCcCCCCEEEccCCc
Confidence            5678888888888888888888888888877776543             666666666653 222100000        


Q ss_pred             ------cccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc--------cc
Q 046036           60 ------NLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL--------YS  125 (614)
Q Consensus        60 ------~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~--------~l  125 (614)
                            .++ +|++|++++|++++ +|..   .++|++|++++|++++ +| .|+++++|++|++..+.+        ++
T Consensus       103 l~~lp~~~~-~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L  175 (454)
T 1jl5_A          103 LTELPELPQ-SLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSL  175 (454)
T ss_dssp             CSSCCCCCT-TCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             CCccccccC-CCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCcccc
Confidence                  011 45555555555542 2221   1588888888888885 66 588888888888733322        67


Q ss_pred             ceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCc
Q 046036          126 FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEH  205 (614)
Q Consensus       126 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  205 (614)
                      ++|++++|++++ +| .|..+++|++|++++|++++ +|...   ++|++|++++|.++ .+| .++.+++|++|++++|
T Consensus       176 ~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          176 EFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN  247 (454)
T ss_dssp             CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS
T ss_pred             cEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCC
Confidence            888888888886 45 58888888888888888874 44432   57888888888887 566 4788888888888888


Q ss_pred             cCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC
Q 046036          206 MLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS  285 (614)
Q Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  285 (614)
                      ++++ +|..   +++|+.|++++|.+++ +|..   +++|+.|++++|++++. |..   .++|+.|++++|.+++.. .
T Consensus       248 ~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i~-~  314 (454)
T 1jl5_A          248 LLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSLC-D  314 (454)
T ss_dssp             CCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEEC-C
T ss_pred             cCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCccc-C
Confidence            8875 3332   3677788888888774 4543   36777777777777752 211   145666666666665522 1


Q ss_pred             ccccCCCceEEEecCC
Q 046036          286 MSVFTNTSVISIVGNG  301 (614)
Q Consensus       286 ~~~~~~l~~~~~~~N~  301 (614)
                        ...+++.+++.+|.
T Consensus       315 --~~~~L~~L~Ls~N~  328 (454)
T 1jl5_A          315 --LPPSLEELNVSNNK  328 (454)
T ss_dssp             --CCTTCCEEECCSSC
T ss_pred             --CcCcCCEEECCCCc
Confidence              11356666666664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=3.3e-30  Score=261.11  Aligned_cols=264  Identities=21%  Similarity=0.211  Sum_probs=179.7

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCE
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ   91 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~   91 (614)
                      +++.++++.+.+....+..+..+++|++|+|++|++++..|..   |.+++ +|++|+|++|.+++..+  +..+++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~   84 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD---LAPFT-KLELLNLSSNVLYETLD--LESLSTLRT   84 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHH---HTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCE
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHH---hhCCC-cCCEEECCCCcCCcchh--hhhcCCCCE
Confidence            3555666666666555555566677888888888777655555   56666 77788888887775544  777778888


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCC
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS  171 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  171 (614)
                      |+|++|++++..     ..++|++|+            +++|++++..+..   +++|++|++++|++++..+..+..++
T Consensus        85 L~Ls~n~l~~l~-----~~~~L~~L~------------l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~  144 (317)
T 3o53_A           85 LDLNNNYVQELL-----VGPSIETLH------------AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRS  144 (317)
T ss_dssp             EECCSSEEEEEE-----ECTTCCEEE------------CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGS
T ss_pred             EECcCCcccccc-----CCCCcCEEE------------CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccC
Confidence            888888777432     235666555            7778777655443   56778888888888766666777777


Q ss_pred             CCCEEEcCCCCCccCCcccc-cCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEc
Q 046036          172 TLSSIDFAHNNFNGSLPLEV-GSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNL  250 (614)
Q Consensus       172 ~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  250 (614)
                      +|++|++++|.+++..+..+ ..+++|++|++++|.+++..  ....+++|++|+|++|.+++ +|..+..+++|+.|+|
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L  221 (317)
T 3o53_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL  221 (317)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred             CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence            88888888888876666655 36778888888888877552  23347778888888888874 4445777788888888


Q ss_pred             cCCcCcccCCcccCCCCCCCEEECcCCcCc-ccCCC-ccccCCCceEEEecCCCccc
Q 046036          251 SHNNLSGTIPKELETLPFLENLNLSFNNFE-GQLPS-MSVFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       251 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~-~~~~~~l~~~~~~~N~~~c~  305 (614)
                      ++|+++ .+|..+..+++|+.|++++|+++ +.+|. ...++.+..+++.+++.+.+
T Consensus       222 ~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             TTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             cCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            888887 45667777888888888888887 33322 23344455555554443333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=2e-29  Score=270.05  Aligned_cols=234  Identities=18%  Similarity=0.144  Sum_probs=172.5

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCE
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ   91 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~   91 (614)
                      +|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..|     +..++ +|++|+|++|.|++..+     .++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLS-TLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----CTTCT-TCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----cccCC-CCCEEEecCCcCCCCCC-----CCCcCE
Confidence            78888888888887777788888888888888888876554     45666 78888888888874332     267888


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCC-CC
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG-LF  170 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l  170 (614)
                      |+|++|.+++..+..   +++|+.|+            |++|.+++..|..|..+++|++|+|++|.+++..|..+. .+
T Consensus       104 L~L~~N~l~~~~~~~---l~~L~~L~------------L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l  168 (487)
T 3oja_A          104 LHAANNNISRVSCSR---GQGKKNIY------------LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS  168 (487)
T ss_dssp             EECCSSCCCCEEECC---CSSCEEEE------------CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             EECcCCcCCCCCccc---cCCCCEEE------------CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence            888888887655533   45566555            888888877777788888888888888888876676665 67


Q ss_pred             CCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEc
Q 046036          171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNL  250 (614)
Q Consensus       171 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  250 (614)
                      ++|+.|+|++|.|++..  .+..+++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++
T Consensus       169 ~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred             CcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence            88888888888887552  23457788888888888876444 47778888888888888874 6667777788888888


Q ss_pred             cCCcCc-ccCCcccCCCCCCCEEECc
Q 046036          251 SHNNLS-GTIPKELETLPFLENLNLS  275 (614)
Q Consensus       251 s~N~l~-~~~p~~~~~l~~L~~L~ls  275 (614)
                      ++|.+. +.+|..+..++.|+.++++
T Consensus       245 ~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888877 5666667777766666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=2.5e-27  Score=235.07  Aligned_cols=210  Identities=22%  Similarity=0.183  Sum_probs=156.2

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+            |++|.+++..+..|
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------L~~n~l~~~~~~~~   96 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI------------LTGNPIQSLALGAF   96 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE------------CTTCCCCEECTTTT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEE------------CCCCccCccChhhh
Confidence            566667777766655555666666777777777766655555666666666665            77777766666667


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccC-CcccccCCCCCceeccCCccCCCCccccccCcccch
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS-LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFE  222 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~  222 (614)
                      .++++|++|++++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+.+|+
T Consensus        97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  176 (276)
T 2z62_A           97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (276)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence            7777777777777777765555677777777788877777753 577778888888888888888777677777777766


Q ss_pred             ----HHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCc
Q 046036          223 ----HLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSM  286 (614)
Q Consensus       223 ----~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~  286 (614)
                          .|++++|.+++..+..+. ..+|+.|+|++|++++..+..|..+++|+.|++++|++++..|..
T Consensus       177 ~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          177 LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence                788888988865555554 448999999999999877777889999999999999999887754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=5.4e-29  Score=252.17  Aligned_cols=245  Identities=18%  Similarity=0.150  Sum_probs=152.8

Q ss_pred             CCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCC
Q 046036            9 NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN   88 (614)
Q Consensus         9 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~   88 (614)
                      .+++|++|+|++|++++..|..|..+++|++|+|++|++++..|     +..++ +|++|+|++|++++..     ..++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~-~L~~L~Ls~n~l~~l~-----~~~~  100 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLS-TLRTLDLNNNYVQELL-----VGPS  100 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-----ETTCT-TCCEEECCSSEEEEEE-----ECTT
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-----hhhcC-CCCEEECcCCcccccc-----CCCC
Confidence            34567777777777776666666777777777777777664433     44555 6677777777766322     2256


Q ss_pred             CCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCC
Q 046036           89 LIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSG  168 (614)
Q Consensus        89 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  168 (614)
                      |++|++++|++++..+..   +++|++|+            +++|++++..+..|..+++|++|+|++|.+++..+..+.
T Consensus       101 L~~L~l~~n~l~~~~~~~---~~~L~~L~------------l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A          101 IETLHAANNNISRVSCSR---GQGKKNIY------------LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             CCEEECCSSCCSEEEECC---CSSCEEEE------------CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             cCEEECCCCccCCcCccc---cCCCCEEE------------CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            777777777766544332   34455554            777777666666666677777777777776655554442


Q ss_pred             -CCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccce
Q 046036          169 -LFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTID  247 (614)
Q Consensus       169 -~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  247 (614)
                       .+++|++|+|++|.|++. + ....+++|++|+|++|.+++. |..+..+++|+.|+|++|.++ .+|..+..+++|+.
T Consensus       166 ~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~  241 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH  241 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred             hccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence             566677777777776643 2 223466677777777777643 333666677777777777776 45556666677777


Q ss_pred             EEccCCcCc-ccCCcccCCCCCCCEEECc-CCcCcccC
Q 046036          248 LNLSHNNLS-GTIPKELETLPFLENLNLS-FNNFEGQL  283 (614)
Q Consensus       248 L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls-~N~l~~~~  283 (614)
                      |++++|+++ +.+|..+..+++|+.++++ .+.+++..
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            777777776 5566666666666666666 33444433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=1.2e-27  Score=253.77  Aligned_cols=268  Identities=21%  Similarity=0.252  Sum_probs=180.1

Q ss_pred             CccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhcccc---------ccccEEEccCCc
Q 046036            4 PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS---------TKLRILDAGGNQ   74 (614)
Q Consensus         4 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~---------~~L~~L~L~~N~   74 (614)
                      |+.+ +.++|++|++++|.+ +.+|++|+++++|++|++++|.++|.+|..++.+.++.         .++++|++++|.
T Consensus         5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~   82 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG   82 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred             cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence            3444 468999999999999 69999999999999999999999999999955433320         146999999999


Q ss_pred             ccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc--------ccceEecCCCccccccchhhhcc
Q 046036           75 FAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL--------YSFQLNLAENNLTGNIPESLENL  146 (614)
Q Consensus        75 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~--------~l~~L~L~~N~l~~~~~~~~~~l  146 (614)
                      +++ +|..   .++|++|++++|.+++ +|..   +++|++|++..+.+        ++++|++++|++++ +| .|.++
T Consensus        83 l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           83 LSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             CSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             ccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence            984 5542   3699999999999996 6654   37788888633322        67788888888885 56 58888


Q ss_pred             CCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhc
Q 046036          147 TSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLL  226 (614)
Q Consensus       147 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L  226 (614)
                      ++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .++.+++|+.|++++|.+++ +|...   ++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEEC
Confidence            888888888888884 55433   488888888888885 55 58888888888888888876 33322   47888888


Q ss_pred             cCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          227 GGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       227 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      ++|.++ .+|. ++.+++|++|++++|++++ +|..   +++|+.|++++|++++. |..  +++++.+++.+|..
T Consensus       223 ~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l-~~~--~~~L~~L~ls~N~l  289 (454)
T 1jl5_A          223 GNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL-PEL--PQSLTFLDVSENIF  289 (454)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCC
T ss_pred             cCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc-Ccc--cCcCCEEECcCCcc
Confidence            888887 5664 7888888888888888885 4442   37788888888888873 332  36778888888753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=5.7e-27  Score=232.50  Aligned_cols=224  Identities=20%  Similarity=0.197  Sum_probs=186.6

Q ss_pred             eeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEec
Q 046036           15 NLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGL   94 (614)
Q Consensus        15 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L   94 (614)
                      ..+..+..++ .+|..+.  ++|++|+|++|++++..+..   |.+++ +|++|+|++|++++..+..|..+++|++|+|
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~---~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYS---FFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL   83 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTT---TTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhH---hcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEEC
Confidence            4556666666 5666664  47899999999998776666   66776 8899999999998777778888999999999


Q ss_pred             cCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCC-CCCCCCCCCCC
Q 046036           95 DRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS-IPKPSGLFSTL  173 (614)
Q Consensus        95 ~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L  173 (614)
                      ++|.+++..+..|.++++|++|+            +++|++++..+..+..+++|++|++++|.+++. +|..+..+++|
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L  151 (276)
T 2z62_A           84 TGNPIQSLALGAFSGLSSLQKLV------------AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEE------------CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             CCCccCccChhhhcCCccccEEE------------CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence            99999888888888888888887            999999877777788999999999999999863 58888889999


Q ss_pred             CEEEcCCCCCccCCcccccCCCCCc----eeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEE
Q 046036          174 SSIDFAHNNFNGSLPLEVGSLSNTQ----ELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLN  249 (614)
Q Consensus       174 ~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  249 (614)
                      ++|++++|.+++..+..+..+.+|+    .|++++|.+++..+..+.. .+|+.|+|++|.+++..+..|..+++|+.|+
T Consensus       152 ~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  230 (276)
T 2z62_A          152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIW  230 (276)
T ss_dssp             CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred             CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEE
Confidence            9999999999987777787777777    8999999998766665544 4899999999999977777789999999999


Q ss_pred             ccCCcCccc
Q 046036          250 LSHNNLSGT  258 (614)
Q Consensus       250 Ls~N~l~~~  258 (614)
                      |++|++++.
T Consensus       231 l~~N~~~c~  239 (276)
T 2z62_A          231 LHTNPWDCS  239 (276)
T ss_dssp             CCSSCBCCC
T ss_pred             ccCCccccc
Confidence            999999854

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.95  E-value=2.6e-28  Score=245.13  Aligned_cols=179  Identities=19%  Similarity=0.156  Sum_probs=125.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfG  451 (614)
                      ..++..|+|||||++|+|.++|+..   ..+++.....|+.++                  |+||||+.++ ++||+|||
T Consensus       120 ~~~~~~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFG  196 (336)
T 4g3f_A          120 REGPWVNIFMELLEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFG  196 (336)
T ss_dssp             EETTEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCT
T ss_pred             EECCEEEEEEeccCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCC
Confidence            3466789999999999999999753   358999998888888                  9999999987 69999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +|+.+......  .........+||+.||| |.  ...++.++|||||||++|||+||+.||........ ......   
T Consensus       197 la~~~~~~~~~--~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~---  270 (336)
T 4g3f_A          197 HALCLQPDGLG--KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIAS---  270 (336)
T ss_dssp             TCEEC--------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHH---
T ss_pred             CCeEccCCCcc--cceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHc---
Confidence            99987654221  00112234689999988 87  67799999999999999999999999976433221 111111   


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                                   .... ...-++...       ..+.++...|++.||++|||+.|+++.|..+.+....
T Consensus       271 -------------~~~~-~~~~~~~~s-------~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~  320 (336)
T 4g3f_A          271 -------------EPPP-IREIPPSCA-------PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGG  320 (336)
T ss_dssp             -------------SCCG-GGGSCTTSC-------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTS
T ss_pred             -------------CCCC-chhcCccCC-------HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhh
Confidence                         0000 000001111       1233566799999999999999999999887766543

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.94  E-value=5.5e-28  Score=238.69  Aligned_cols=159  Identities=20%  Similarity=0.349  Sum_probs=115.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeCC-CCCeeecccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLDY-DMTAYVGDFG  451 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld~-~~~~kl~DfG  451 (614)
                      ++..++|||||++|+|.++|+..   ..+++.....++.++                    |+||||+. ++.+||+|||
T Consensus       101 ~~~~~lvmEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFG  177 (290)
T 3fpq_A          101 KKCIVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLG  177 (290)
T ss_dssp             EEEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTT
T ss_pred             CcEEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCc
Confidence            45679999999999999999753   358888887777666                    99999985 7899999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +|+.....         .....+||+.||| |. .++++.++|||||||++|||+||+.||.+....             
T Consensus       178 la~~~~~~---------~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~-------------  235 (290)
T 3fpq_A          178 LATLKRAS---------FAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNA-------------  235 (290)
T ss_dssp             GGGGCCTT---------SBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH-------------
T ss_pred             CCEeCCCC---------ccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcH-------------
Confidence            99865432         2445789999977 88 677999999999999999999999999642211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          ..+...+.....  |..   +..   .....+.++...|++.+|++|||++|+++
T Consensus       236 ----~~~~~~i~~~~~--~~~---~~~---~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          236 ----AQIYRRVTSGVK--PAS---FDK---VAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             ----HHHHHHHTTTCC--CGG---GGG---CCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ----HHHHHHHHcCCC--CCC---CCc---cCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                111112211111  000   000   00112345677999999999999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=6.3e-26  Score=224.13  Aligned_cols=205  Identities=20%  Similarity=0.214  Sum_probs=126.1

Q ss_pred             ccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhh
Q 046036           65 LRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE  144 (614)
Q Consensus        65 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~  144 (614)
                      .+.+++++|.++ .+|..+.  ++|++|+|++|++++..+..|.++++|++|+            |++|+++...+..|.
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------l~~n~l~~i~~~~~~   82 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY------------LNDNKLQTLPAGIFK   82 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEE------------CCSSCCSCCCTTTTS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEE------------CCCCccCeeChhhhc
Confidence            444555555554 3444332  3455555555555544444455555555444            555555544444455


Q ss_pred             ccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHH
Q 046036          145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHL  224 (614)
Q Consensus       145 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L  224 (614)
                      .+++|++|+|++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            55556666666666554444445556666666666666665555555666666666666666665555556666667777


Q ss_pred             hccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCC
Q 046036          225 LLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       225 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      +|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            777777766556667778888888888888887666677888888888888888876554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=4.2e-26  Score=225.60  Aligned_cols=226  Identities=20%  Similarity=0.237  Sum_probs=122.8

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      +..+++.++.+.+..  .+..+++|+.|++++|.++. ++ .   +..++ +|++|+|++|.+++ + ..+..+++|++|
T Consensus        21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~---l~~l~-~L~~L~l~~n~l~~-~-~~l~~l~~L~~L   90 (272)
T 3rfs_A           21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-G---IQYLP-NVRYLALGGNKLHD-I-SALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-T---GGGCT-TCCEEECTTSCCCC-C-GGGTTCTTCCEE
T ss_pred             HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-c---cccCC-CCcEEECCCCCCCC-c-hhhcCCCCCCEE
Confidence            334444455444332  23445555566666555552 22 2   44444 55556666665553 2 245555566666


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                      +|++|.+++..+..|+.+++|++|+            |++|++++..+..|..+++|++|+|++|++++..+..+..+++
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~------------L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELV------------LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN  158 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEE------------CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ECCCCccCccChhHhcCCcCCCEEE------------CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence            6666655555555555555555554            5566655555555555566666666666655444444555556


Q ss_pred             CCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccC
Q 046036          173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSH  252 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  252 (614)
                      |+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.       +++|+.|+++.
T Consensus       159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~  231 (272)
T 3rfs_A          159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI  231 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred             CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence            66666666666555444455556666666666666555555555566666666666655432       33455566666


Q ss_pred             CcCcccCCcccCCCC
Q 046036          253 NNLSGTIPKELETLP  267 (614)
Q Consensus       253 N~l~~~~p~~~~~l~  267 (614)
                      |.++|.+|..++.++
T Consensus       232 n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          232 NKHSGVVRNSAGSVA  246 (272)
T ss_dssp             HHTGGGBBCTTSCBC
T ss_pred             HhCCCcccCcccccC
Confidence            666666665555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=4.1e-27  Score=232.87  Aligned_cols=222  Identities=21%  Similarity=0.197  Sum_probs=172.3

Q ss_pred             CCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 046036           35 SKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQ  114 (614)
Q Consensus        35 ~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  114 (614)
                      .++..+++..+.+.....     +..++ +|+.|++++|.++ .++ .+..+++|++|+|++|.+++.  ..++.+++|+
T Consensus        19 ~~l~~l~l~~~~~~~~~~-----~~~l~-~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~   88 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAVT-----QNELN-SIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLT   88 (272)
T ss_dssp             HHHHHHHHTCSCTTSEEC-----HHHHT-TCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCC
T ss_pred             HHHHHHHhcCcccccccc-----ccccc-ceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCC
Confidence            345566666776664322     45565 7888888888876 333 477888888888888888753  3677777777


Q ss_pred             cccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCC
Q 046036          115 KLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSL  194 (614)
Q Consensus       115 ~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  194 (614)
                      +|+            |++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+++..+..+..+
T Consensus        89 ~L~------------L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  156 (272)
T 3rfs_A           89 YLI------------LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL  156 (272)
T ss_dssp             EEE------------CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             EEE------------CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC
Confidence            776            88888887777778888888888888888887666677888888888888888887777677888


Q ss_pred             CCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEEC
Q 046036          195 SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNL  274 (614)
Q Consensus       195 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  274 (614)
                      ++|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+.       +++|+.|++
T Consensus       157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~  229 (272)
T 3rfs_A          157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSE  229 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHH
T ss_pred             ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHH
Confidence            8888888888888877777778888888888888888877777788888888888888887743       456788888


Q ss_pred             cCCcCcccCCC
Q 046036          275 SFNNFEGQLPS  285 (614)
Q Consensus       275 s~N~l~~~~p~  285 (614)
                      +.|.++|.+|.
T Consensus       230 ~~n~~~g~ip~  240 (272)
T 3rfs_A          230 WINKHSGVVRN  240 (272)
T ss_dssp             HHHHTGGGBBC
T ss_pred             HHHhCCCcccC
Confidence            88888888775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.7e-25  Score=221.04  Aligned_cols=203  Identities=19%  Similarity=0.191  Sum_probs=128.1

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCc
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK  115 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  115 (614)
                      +++++++++|+++ .+|..+   .   .+|++|+|++|++++..+..|.++++|++|+|++|.++...+..|..+++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~---~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI---P---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC---C---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred             CCCEEEccCCCCC-ccCCCC---C---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence            3556666666665 344431   1   25566666666666444445666666666666666666444444556666665


Q ss_pred             ccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCC
Q 046036          116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLS  195 (614)
Q Consensus       116 L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  195 (614)
                      |+            |++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|.|++..+..|..++
T Consensus        90 L~------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           90 LW------------VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             EE------------CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             EE------------CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            55            666666655555566666666666666666655555566666666666666666655555566666


Q ss_pred             CCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcc
Q 046036          196 NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSG  257 (614)
Q Consensus       196 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (614)
                      +|+.|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++..
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            77777777777666666666667777777777777775555567777777778887777764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.94  E-value=6.1e-27  Score=235.86  Aligned_cols=162  Identities=17%  Similarity=0.238  Sum_probs=121.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..|||||||++|+|.+++...    .+++.....|+.++                  |+||||+.++.+||+|||+
T Consensus       141 ~~~~~~~ivmEy~~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGl  216 (346)
T 4fih_A          141 LVGDELWVVMEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF  216 (346)
T ss_dssp             EETTEEEEEECCCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred             EECCEEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcC
Confidence            4567889999999999999999743    48898888888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+.+.....       .....+||+.||| |.  ...|+.++||||+||++|||+||+.||.....              
T Consensus       217 a~~~~~~~~-------~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--------------  275 (346)
T 4fih_A          217 CAQVSKEVP-------RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--------------  275 (346)
T ss_dssp             CEECCSSSC-------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--------------
T ss_pred             ceecCCCCC-------cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--------------
Confidence            998765432       2456899999988 87  66799999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+.+. .+.....+.......+..       .+.++...|++.||++|||+.|+++
T Consensus       276 ---~~~~~-~i~~~~~~~~~~~~~~s~-------~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          276 ---LKAMK-MIRDNLPPRLKNLHKVSP-------SLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             ---HHHHH-HHHHSSCCCCSCGGGSCH-------HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ---HHHHH-HHHcCCCCCCCccccCCH-------HHHHHHHHHcCCChhHCcCHHHHhc
Confidence               11111 111111111111111221       2335667999999999999999875

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.93  E-value=2.4e-27  Score=239.23  Aligned_cols=163  Identities=21%  Similarity=0.253  Sum_probs=121.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..|+|||||++|+|.++|...+ ...+++.+...|+.++                  |+||||++++.+||+|||+
T Consensus        93 ~~~~~~yiVmEy~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGl  171 (350)
T 4b9d_A           93 EENGSLYIVMDYCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGI  171 (350)
T ss_dssp             EETTEEEEEEECCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTE
T ss_pred             EECCEEEEEEeCCCCCcHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEccccc
Confidence            34677899999999999999997542 3457787777777766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+.+....       ...+..+||+.||| |.  ...++.++||||+||++|||+||+.||....               
T Consensus       172 a~~~~~~~-------~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~---------------  229 (350)
T 4b9d_A          172 ARVLNSTV-------ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS---------------  229 (350)
T ss_dssp             ESCCCHHH-------HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS---------------
T ss_pred             ceeecCCc-------ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC---------------
Confidence            99765421       12345789999988 87  6679999999999999999999999997532               


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                        ..+.+...+.....+.+.   .+.    +   .+.++...|++.||++|||+.|+++
T Consensus       230 --~~~~~~~i~~~~~~~~~~---~~s----~---~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          230 --MKNLVLKIISGSFPPVSL---HYS----Y---DLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             --HHHHHHHHHHTCCCCCCT---TSC----H---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             --HHHHHHHHHcCCCCCCCc---cCC----H---HHHHHHHHHccCChhHCcCHHHHhc
Confidence              122233333332221111   111    1   2335667999999999999999985

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.2e-25  Score=224.19  Aligned_cols=205  Identities=23%  Similarity=0.228  Sum_probs=149.9

Q ss_pred             hccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCcccc
Q 046036           58 FTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTG  137 (614)
Q Consensus        58 ~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~  137 (614)
                      +.+++ +++++++++|.++ .+|..+.  ++|+.|+|++|.+++..+..|..+++|++|+            |++|.|++
T Consensus         6 ~~~l~-~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~------------L~~n~l~~   69 (290)
T 1p9a_G            6 VSKVA-SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN------------LDRAELTK   69 (290)
T ss_dssp             EECST-TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE------------CTTSCCCE
T ss_pred             ccccC-CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEE------------CCCCccCc
Confidence            55666 7888888888887 5666554  5888888888888877777888888888777            88888875


Q ss_pred             ccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccC
Q 046036          138 NIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGN  217 (614)
Q Consensus       138 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~  217 (614)
                      ..+.  ..+++|++|+|++|+++ .+|..+..+++|++|++++|+|++..+..|..+++|++|+|++|++++..+..|..
T Consensus        70 ~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           70 LQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             EECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             ccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence            4432  67788888888888887 66777777788888888888887666667777777777777777777666666667


Q ss_pred             cccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCccc
Q 046036          218 RSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQ  282 (614)
Q Consensus       218 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  282 (614)
                      +++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.+++++|++.+.
T Consensus       147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            777777777777777555555666777777777777776 4555565666666666666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.6e-25  Score=223.33  Aligned_cols=203  Identities=23%  Similarity=0.203  Sum_probs=111.1

Q ss_pred             CCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCC
Q 046036           31 LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKL  110 (614)
Q Consensus        31 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  110 (614)
                      ++++++|+++++++|+++ .+|..+   .   .+++.|+|++|.+++..|..|..+++|++|+|++|.+++..+.  +.+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l   76 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---P---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTL   76 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---C---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---C---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCC
Confidence            344555556666665555 344331   1   1555566666665555555555555666666666655533221  444


Q ss_pred             CCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCccc
Q 046036          111 QNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLE  190 (614)
Q Consensus       111 ~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  190 (614)
                      ++|++|+            |++|+|+ .+|..+..+++|++|+|++|+|++..+..+..+++|++|+|++|+|++..+..
T Consensus        77 ~~L~~L~------------Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  143 (290)
T 1p9a_G           77 PVLGTLD------------LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL  143 (290)
T ss_dssp             TTCCEEE------------CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CcCCEEE------------CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence            5555444            5555555 44445555556666666666655444455555556666666666655544444


Q ss_pred             ccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCc
Q 046036          191 VGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       191 ~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  256 (614)
                      |..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus       144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            555556666666666655544445555555666666666655 44555555555566666655554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=2.8e-29  Score=268.28  Aligned_cols=178  Identities=19%  Similarity=0.168  Sum_probs=84.1

Q ss_pred             ccceEecCCCccccc----cchhhhccCCCCeeecccccCCCCC-----CCCCCCCCCCCEEEcCCCCCccC----Cccc
Q 046036          124 YSFQLNLAENNLTGN----IPESLENLTSLQILNLSCNHLGGSI-----PKPSGLFSTLSSIDFAHNNFNGS----LPLE  190 (614)
Q Consensus       124 ~l~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~~~~  190 (614)
                      +++.|+|++|.++..    ++..+..+++|++|+|++|.+++..     +..+..+++|++|++++|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            344555555555532    3444445555555555555544211     11122345555555555555532    3444


Q ss_pred             ccCCCCCceeccCCccCCCCccccccC-----cccchHHhccCcccccc----CCccccCCCccceEEccCCcCcccCCc
Q 046036          191 VGSLSNTQELDFSEHMLSDEIPITLGN-----RSKFEHLLLGGNMFQGR----IPPFFGSFKGTIDLNLSHNNLSGTIPK  261 (614)
Q Consensus       191 ~~~l~~L~~L~ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~  261 (614)
                      +..+++|++|++++|.+++..+..+..     .++|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            444555555555555554332222221     13555555555555433    233444455555555555555543333


Q ss_pred             ccCC-----CCCCCEEECcCCcCcc----cCC-CccccCCCceEEEecCC
Q 046036          262 ELET-----LPFLENLNLSFNNFEG----QLP-SMSVFTNTSVISIVGNG  301 (614)
Q Consensus       262 ~~~~-----l~~L~~L~ls~N~l~~----~~p-~~~~~~~l~~~~~~~N~  301 (614)
                      .+..     .++|+.|++++|.+++    .+| ....+++++.+++.+|+
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            2221     4455555555555553    222 22334555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.8e-25  Score=239.85  Aligned_cols=236  Identities=23%  Similarity=0.262  Sum_probs=121.9

Q ss_pred             CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCC
Q 046036           11 FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLI   90 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~   90 (614)
                      ++|+.|+|++|.|+ .+|.   .+++|++|+|++|+|+ .+|.      .++ +|++|+|++|++++ +|.   .+++|+
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~------~l~-~L~~L~Ls~N~l~~-l~~---~l~~L~  124 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV------LPP-GLLELSIFSNPLTH-LPA---LPSGLC  124 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC------CCT-TCCEEEECSCCCCC-CCC---CCTTCC
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC------CCC-CCCEEECcCCcCCC-CCC---CCCCcC
Confidence            44555555555554 2332   2344555555555554 2332      122 44555555555542 332   334455


Q ss_pred             EEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCC
Q 046036           91 QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLF  170 (614)
Q Consensus        91 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  170 (614)
                      +|+|++|++++ +|..   +++|+            +|+|++|++++. |.   .+.+|+.|++++|.+++ +|   ..+
T Consensus       125 ~L~L~~N~l~~-lp~~---l~~L~------------~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~  180 (622)
T 3g06_A          125 KLWIFGNQLTS-LPVL---PPGLQ------------ELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLP  180 (622)
T ss_dssp             EEECCSSCCSC-CCCC---CTTCC------------EEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred             EEECCCCCCCc-CCCC---CCCCC------------EEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccC
Confidence            55555555542 3322   24444            444666666632 32   23556666666666653 44   334


Q ss_pred             CCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEc
Q 046036          171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNL  250 (614)
Q Consensus       171 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  250 (614)
                      ++|+.|++++|.|++ +|..   +++|+.|++++|.++.. |.   .+++|+.|+|++|.|++ +|   ..+++|+.|+|
T Consensus       181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L  248 (622)
T 3g06_A          181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMV  248 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence            566666666666663 3322   35566666666666532 22   13556666666666663 34   34456666666


Q ss_pred             cCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCC
Q 046036          251 SHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGK  302 (614)
Q Consensus       251 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~  302 (614)
                      ++|+|+ .+|.   .+++|+.|++++|+|+..++.+..++++..+++.+|+.
T Consensus       249 s~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          249 SGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             CCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            666666 3343   44566666666666664433455566666666666654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.92  E-value=6.4e-26  Score=234.15  Aligned_cols=162  Identities=17%  Similarity=0.238  Sum_probs=120.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..|+|||||++|+|.+++...    .+++.....|+.++                  |+||||+.++.+||+|||+
T Consensus       218 ~~~~~~~iVmEy~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGl  293 (423)
T 4fie_A          218 LVGDELWVVMEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF  293 (423)
T ss_dssp             EETTEEEEEEECCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTT
T ss_pred             EECCEEEEEEeCCCCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCcc
Confidence            4467889999999999999999743    48888888888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+.+.....       .....+||+.||| |.  ...|+.++||||+||++|||++|+.||.+...              
T Consensus       294 a~~~~~~~~-------~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--------------  352 (423)
T 4fie_A          294 CAQVSKEVP-------RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--------------  352 (423)
T ss_dssp             CEECCSSCC-------CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--------------
T ss_pred             ceECCCCCc-------cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--------------
Confidence            998765432       2456899999988 87  67799999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+.+. .+.....+.......+..       .+.++...|++.||++|||+.|+++
T Consensus       353 ---~~~~~-~i~~~~~~~~~~~~~~s~-------~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          353 ---LKAMK-MIRDNLPPRLKNLHKVSP-------SLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             ---HHHHH-HHHHSCCCCCSCTTSSCH-------HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ---HHHHH-HHHcCCCCCCcccccCCH-------HHHHHHHHHcCCChhHCcCHHHHhc
Confidence               11111 111111111111111111       2335667999999999999999875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=7e-26  Score=228.56  Aligned_cols=226  Identities=19%  Similarity=0.183  Sum_probs=126.1

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCC--cCCCCCCEEeccCCcCcccCC----ccccC
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI--PKYFNLIQLGLDRNCLAGSIP----FSIGK  109 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~  109 (614)
                      .++.|.+.++.++...-..+..+..++ +|++|+|++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            356666666655422111111122333 56666666666666666665  666666666666666665433    23334


Q ss_pred             CCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCC--C--CCCCCCCCCCCEEEcCCCCCcc
Q 046036          110 LQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS--I--PKPSGLFSTLSSIDFAHNNFNG  185 (614)
Q Consensus       110 l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~  185 (614)
                      +++|++|+            |++|++++..+..|..+++|++|+|++|++.+.  +  +..+..+++|++|+|++|.++ 
T Consensus       144 ~~~L~~L~------------Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  210 (310)
T 4glp_A          144 KPGLKVLS------------IAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-  210 (310)
T ss_dssp             CSCCCEEE------------EECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-
T ss_pred             ccCCCEEE------------eeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-
Confidence            55555554            666666665566666666666666666665431  1  222345666666666666665 


Q ss_pred             CCcc----cccCCCCCceeccCCccCCCCccccccCc---ccchHHhccCccccccCCccccCCCccceEEccCCcCccc
Q 046036          186 SLPL----EVGSLSNTQELDFSEHMLSDEIPITLGNR---SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGT  258 (614)
Q Consensus       186 ~~~~----~~~~l~~L~~L~ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (614)
                      .++.    .++.+++|++|+|++|.+++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|+|++|+|++.
T Consensus       211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          211 TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence            2222    13455666666666666666555555554   46666666666666 4454442  5666666666666643


Q ss_pred             CCcccCCCCCCCEEECcCCcCc
Q 046036          259 IPKELETLPFLENLNLSFNNFE  280 (614)
Q Consensus       259 ~p~~~~~l~~L~~L~ls~N~l~  280 (614)
                       |. +..+++|+.|++++|+++
T Consensus       288 -~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          288 -PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             -CC-TTSCCCCSCEECSSTTTS
T ss_pred             -ch-hhhCCCccEEECcCCCCC
Confidence             22 455566666666666654

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.92  E-value=4.1e-26  Score=226.35  Aligned_cols=162  Identities=18%  Similarity=0.225  Sum_probs=121.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..|+|||||++|+|.++|...   ..++......++.++                  |+|||++.++.+||+|||+
T Consensus       102 ~~~~~~yivmEy~~gG~L~~~i~~~---~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGl  178 (311)
T 4aw0_A          102 QDDEKLYFGLSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGT  178 (311)
T ss_dssp             ECSSEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             EeCCEEEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCC
Confidence            4567889999999999999999753   358888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+.+......     ......+||+.||| |.  ...++.++||||+||++|||+||+.||.....              
T Consensus       179 a~~~~~~~~~-----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--------------  239 (311)
T 4aw0_A          179 AKVLSPESKQ-----ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE--------------  239 (311)
T ss_dssp             CEECCTTTTC-----CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             ceecCCCCCc-----ccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--------------
Confidence            9987644321     23456799999988 87  66789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+.+...+...... |.   .+.    +   .+.++...|++.||++|||++|+..
T Consensus       240 ---~~~~~~i~~~~~~~-p~---~~s----~---~~~dli~~lL~~dp~~R~t~~e~~~  284 (311)
T 4aw0_A          240 ---GLIFAKIIKLEYDF-PE---KFF----P---KARDLVEKLLVLDATKRLGCEEMEG  284 (311)
T ss_dssp             ---HHHHHHHHHTCCCC-CT---TCC----H---HHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred             ---HHHHHHHHcCCCCC-Cc---ccC----H---HHHHHHHHHccCCHhHCcChHHHcC
Confidence               12222222222211 11   111    1   2234667899999999999998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.92  E-value=5.7e-28  Score=258.11  Aligned_cols=281  Identities=19%  Similarity=0.147  Sum_probs=164.4

Q ss_pred             ccCCCCCCeeeecCCcccc----cCCcCCCCCCCCcEEecccccCcccCCcChhhhcccc---ccccEEEccCCcccc--
Q 046036            7 IGNLFRLQNLNFGNSTVQG----EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS---TKLRILDAGGNQFAG--   77 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~---~~L~~L~L~~N~l~~--   77 (614)
                      +..+++|++|+|++|.+++    .++..+..+++|++|+|++|.++...+..+  +..++   .+|++|+|++|.++.  
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--~~~l~~~~~~L~~L~L~~n~i~~~~  101 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV--LQGLQTPSCKIQKLSLQNCCLTGAG  101 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH--HHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH--HHHHhhCCCceeEEEccCCCCCHHH
Confidence            3445566666666666653    234455555666666666666654333222  11121   136666666666652  


Q ss_pred             --cCCCCCcCCCCCCEEeccCCcCcccCCcccc-----CCCCCCcccccccccccceEecCCCcccccc----chhhhcc
Q 046036           78 --DIPAGIPKYFNLIQLGLDRNCLAGSIPFSIG-----KLQNLQKLNPLATSLYSFQLNLAENNLTGNI----PESLENL  146 (614)
Q Consensus        78 --~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~----~~~~~~l  146 (614)
                        .++..+..+++|++|+|++|.++...+..+.     ..++|++|            +|++|++++..    +..+..+
T Consensus       102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L------------~L~~n~l~~~~~~~l~~~l~~~  169 (461)
T 1z7x_W          102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL------------QLEYCSLSAASCEPLASVLRAK  169 (461)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE------------ECTTSCCBGGGHHHHHHHHHHC
T ss_pred             HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE------------ECCCCCCCHHHHHHHHHHHhhC
Confidence              3355556666666666666666543333222     13345544            47888777533    5556667


Q ss_pred             CCCCeeecccccCCCCCCCCCC-----CCCCCCEEEcCCCCCccC----CcccccCCCCCceeccCCccCCCCc-----c
Q 046036          147 TSLQILNLSCNHLGGSIPKPSG-----LFSTLSSIDFAHNNFNGS----LPLEVGSLSNTQELDFSEHMLSDEI-----P  212 (614)
Q Consensus       147 ~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~-----~  212 (614)
                      ++|++|+|++|.+++..+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.+++..     +
T Consensus       170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  249 (461)
T 1z7x_W          170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP  249 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence            7888888887777643222222     245777788887777753    4556667777777777777776432     2


Q ss_pred             ccccCcccchHHhccCcccccc----CCccccCCCccceEEccCCcCcccCCcccC-----CCCCCCEEECcCCcCcccC
Q 046036          213 ITLGNRSKFEHLLLGGNMFQGR----IPPFFGSFKGTIDLNLSHNNLSGTIPKELE-----TLPFLENLNLSFNNFEGQL  283 (614)
Q Consensus       213 ~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~ls~N~l~~~~  283 (614)
                      ..+..+++|++|++++|.++..    ++..+..+++|+.|++++|.+++..+..+.     ..++|+.|++++|.+++..
T Consensus       250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            2233567777777777777643    455666677777777777777654333332     2357777777777776541


Q ss_pred             ----C-CccccCCCceEEEecCC
Q 046036          284 ----P-SMSVFTNTSVISIVGNG  301 (614)
Q Consensus       284 ----p-~~~~~~~l~~~~~~~N~  301 (614)
                          + .....++++.+++++|.
T Consensus       330 ~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          330 CSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCccEEEccCCc
Confidence                1 12334667777777774

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.92  E-value=1.6e-25  Score=222.23  Aligned_cols=154  Identities=19%  Similarity=0.253  Sum_probs=113.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..|+|||||++|||.++|...   ..+++.....++.++                  |+|||+++++.+||+|||+|
T Consensus        97 ~~~~~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla  173 (304)
T 3ubd_A           97 TEGKLYLILDFLRGGDLFTRLSKE---VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS  173 (304)
T ss_dssp             ETTEEEEEECCCTTCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEE
T ss_pred             ECCEEEEEEEcCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccc
Confidence            456789999999999999999753   358888888887777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +......       ......+||+.||| |.  ...++.++||||+||++|||+||+.||.....               
T Consensus       174 ~~~~~~~-------~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---------------  231 (304)
T 3ubd_A          174 KESIDHE-------KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR---------------  231 (304)
T ss_dssp             EC------------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---------------
T ss_pred             eeccCCC-------ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH---------------
Confidence            8765432       22345789999988 87  67899999999999999999999999975321               


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGV  583 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm  583 (614)
                        .+.+......... .|.   ..+    .   .+.++...|++.||++|||+
T Consensus       232 --~~~~~~i~~~~~~-~p~---~~s----~---~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          232 --KETMTMILKAKLG-MPQ---FLS----P---EAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             --HHHHHHHHHCCCC-CCT---TSC----H---HHHHHHHHHTCSSGGGSTTC
T ss_pred             --HHHHHHHHcCCCC-CCC---cCC----H---HHHHHHHHHcccCHHHCCCC
Confidence              1222222222211 111   111    1   23356679999999999985

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=4e-24  Score=233.71  Aligned_cols=227  Identities=29%  Similarity=0.337  Sum_probs=188.8

Q ss_pred             CCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCC
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      ||.   .+++|++|+|++|+|+ .+|.   .+++|++|+|++|++++ +|..      ++ +|+.|+|++|+++ .+|..
T Consensus        76 lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~~------l~-~L~~L~L~~N~l~-~lp~~  139 (622)
T 3g06_A           76 LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPAL------PS-GLCKLWIFGNQLT-SLPVL  139 (622)
T ss_dssp             CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCCC------CT-TCCEEECCSSCCS-CCCCC
T ss_pred             CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCCC------CC-CcCEEECCCCCCC-cCCCC
Confidence            555   5789999999999999 4665   67899999999999995 4542      33 8999999999998 46654


Q ss_pred             CcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCC
Q 046036           83 IPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS  162 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  162 (614)
                         +++|++|+|++|++++ +|..   +.+|+.|+            +++|.|++ +|   ..+++|+.|+|++|.+++ 
T Consensus       140 ---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~------------L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-  195 (622)
T 3g06_A          140 ---PPGLQELSVSDNQLAS-LPAL---PSELCKLW------------AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-  195 (622)
T ss_dssp             ---CTTCCEEECCSSCCSC-CCCC---CTTCCEEE------------CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred             ---CCCCCEEECcCCcCCC-cCCc---cCCCCEEE------------CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence               4899999999999985 4543   35666666            99999995 55   557999999999999994 


Q ss_pred             CCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCC
Q 046036          163 IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSF  242 (614)
Q Consensus       163 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  242 (614)
                      +|..   +++|+.|++++|.++ .+|.   .+++|+.|++++|.+++ +|   ..+++|+.|+|++|.|+ .+|.   .+
T Consensus       196 l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~  260 (622)
T 3g06_A          196 LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LP  260 (622)
T ss_dssp             CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CC
T ss_pred             CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---cc
Confidence            5543   479999999999998 4554   35889999999999987 44   45688999999999998 5665   67


Q ss_pred             CccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC
Q 046036          243 KGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS  285 (614)
Q Consensus       243 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  285 (614)
                      ++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus       261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            89999999999999 7788999999999999999999987653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=9.3e-25  Score=220.31  Aligned_cols=203  Identities=19%  Similarity=0.160  Sum_probs=105.1

Q ss_pred             CCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCC----CCCcCCCCCCEEeccCCcCcccCCccccCC
Q 046036           35 SKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP----AGIPKYFNLIQLGLDRNCLAGSIPFSIGKL  110 (614)
Q Consensus        35 ~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  110 (614)
                      ++|++|+|++|.+++..|..+.. ..++ +|++|+|++|.+++..+    ..+..+++|++|+|++|++++..|..|+.+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~-~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLE-ATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSS-CCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             CceeEEEeeCCEeccchhhhhhh-ccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            34555555555555555544200 4444 55555555555554333    122345555555555555555555555555


Q ss_pred             CCCCcccccccccccceEecCCCccccc--c--chhhhccCCCCeeecccccCCCCCCC----CCCCCCCCCEEEcCCCC
Q 046036          111 QNLQKLNPLATSLYSFQLNLAENNLTGN--I--PESLENLTSLQILNLSCNHLGGSIPK----PSGLFSTLSSIDFAHNN  182 (614)
Q Consensus       111 ~~L~~L~l~~~~~~l~~L~L~~N~l~~~--~--~~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~Ls~N~  182 (614)
                      ++|++|+            |++|++.+.  +  +..+..+++|++|+|++|+++ .++.    .+..+++|++|+|++|.
T Consensus       169 ~~L~~L~------------Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          169 PALTSLD------------LSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             TTCCEEE------------CCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred             CCCCEEE------------CCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCC
Confidence            5555554            555554431  1  111245555555555555554 1221    12344555555555555


Q ss_pred             CccCCcccccCC---CCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcc
Q 046036          183 FNGSLPLEVGSL---SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSG  257 (614)
Q Consensus       183 l~~~~~~~~~~l---~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (614)
                      |++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus       236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          236 LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            555545444444   45666666666665 3344442  5666666666666643 32 4566777777777777763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.92  E-value=6.1e-27  Score=244.02  Aligned_cols=245  Identities=20%  Similarity=0.233  Sum_probs=131.0

Q ss_pred             CCcCCCCCCCCcEEecccccCcccCCcChhh-hccccccccEEEccCC---cccccCCCCC-------cCCCCCCEEecc
Q 046036           27 IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDS-FTNLSTKLRILDAGGN---QFAGDIPAGI-------PKYFNLIQLGLD   95 (614)
Q Consensus        27 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~l~~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~   95 (614)
                      ++..+..+++|++|+|++|.++...+..+.. +..++ +|++|+|++|   ++++.+|..+       ..+++|++|+|+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3344444555555555555555432222111 33343 5555555553   2233333322       445555555555


Q ss_pred             CCcCcc----cCCccccCCCCCCcccccccccccceEecCCCccccccchhhh----cc---------CCCCeeeccccc
Q 046036           96 RNCLAG----SIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE----NL---------TSLQILNLSCNH  158 (614)
Q Consensus        96 ~N~l~~----~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~----~l---------~~L~~L~L~~N~  158 (614)
                      +|.++.    .+|..+..+++|++|+            |++|.++...+..+.    .+         ++|++|+|++|+
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~------------L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLY------------LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEE------------CCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEE------------CcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            555554    2444555555555554            555555433332222    22         566666666666


Q ss_pred             CC-CCCC---CCCCCCCCCCEEEcCCCCCcc-----CCcccccCCCCCceeccCCccCC----CCccccccCcccchHHh
Q 046036          159 LG-GSIP---KPSGLFSTLSSIDFAHNNFNG-----SLPLEVGSLSNTQELDFSEHMLS----DEIPITLGNRSKFEHLL  225 (614)
Q Consensus       159 l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~ls~N~l~----~~~~~~~~~l~~L~~L~  225 (614)
                      ++ +.++   ..+..+++|++|++++|.|+.     ..+..+..+++|+.|+|++|.++    ..+|..+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            54 2222   233445566666666665551     22324555666666666666654    34455556666666666


Q ss_pred             ccCcccccc----CCcccc--CCCccceEEccCCcCcc----cCCccc-CCCCCCCEEECcCCcCcccCC
Q 046036          226 LGGNMFQGR----IPPFFG--SFKGTIDLNLSHNNLSG----TIPKEL-ETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       226 L~~N~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      |++|.+++.    ++..+.  .+++|+.|+|++|.+++    .+|..+ ..+++|+.|++++|++++..+
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            666666543    344553  37778888888888776    366655 557788888888888776553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.92  E-value=2.1e-27  Score=247.54  Aligned_cols=244  Identities=18%  Similarity=0.214  Sum_probs=150.9

Q ss_pred             CCccccCCCCCCeeeecCCcccccC----CcCCCCCCCCcEEecccc---cCcccCCcChhh----hccccccccEEEcc
Q 046036            3 VPQEIGNLFRLQNLNFGNSTVQGEI----PSHLSPTSKLTYLSLFSN---NLHGIIPPSLDS----FTNLSTKLRILDAG   71 (614)
Q Consensus         3 ip~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N---~l~~~~p~~~~~----~~~l~~~L~~L~L~   71 (614)
                      ++..+.++++|++|+|++|.+++..    +..|..+++|++|+|++|   ++++.+|..+..    +..++ +|++|+|+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECC
Confidence            4555666677777777777776543    334666777777777764   344444544321    24555 67777777


Q ss_pred             CCcccc----cCCCCCcCCCCCCEEeccCCcCcccCCccccC----C---------CCCCcccccccccccceEecCCCc
Q 046036           72 GNQFAG----DIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGK----L---------QNLQKLNPLATSLYSFQLNLAENN  134 (614)
Q Consensus        72 ~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----l---------~~L~~L~l~~~~~~l~~L~L~~N~  134 (614)
                      +|.++.    .+|..+..+++|++|+|++|.++...+..+..    +         ++|++|+            |++|+
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~------------L~~n~  170 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII------------CGRNR  170 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE------------CCSSC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE------------CCCCC
Confidence            777765    35556666777777777777775443333332    2         5555554            77777


Q ss_pred             cc-cccc---hhhhccCCCCeeecccccCCC-----CCCCCCCCCCCCCEEEcCCCCCc----cCCcccccCCCCCceec
Q 046036          135 LT-GNIP---ESLENLTSLQILNLSCNHLGG-----SIPKPSGLFSTLSSIDFAHNNFN----GSLPLEVGSLSNTQELD  201 (614)
Q Consensus       135 l~-~~~~---~~~~~l~~L~~L~L~~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~  201 (614)
                      ++ +.++   ..+..+++|++|+|++|+++.     ..+..+..+++|+.|+|++|.|+    +.+|..+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            76 3333   355667777777777777662     23335666677777777777775    45566666777777777


Q ss_pred             cCCccCCCC----ccccc--cCcccchHHhccCccccc----cCCccc-cCCCccceEEccCCcCcccC
Q 046036          202 FSEHMLSDE----IPITL--GNRSKFEHLLLGGNMFQG----RIPPFF-GSFKGTIDLNLSHNNLSGTI  259 (614)
Q Consensus       202 ls~N~l~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~  259 (614)
                      |++|.+++.    ++..+  +.+++|+.|+|++|.+++    .+|..+ .++++|++|+|++|++++..
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            777777654    34444  236677777777777765    355555 45677777777777777554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=8.7e-25  Score=211.82  Aligned_cols=196  Identities=14%  Similarity=0.126  Sum_probs=127.4

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCc-ccccCCCCCcCCCCCCEEeccC-CcCcccCCccccCCCCC
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQ-FAGDIPAGIPKYFNLIQLGLDR-NCLAGSIPFSIGKLQNL  113 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L  113 (614)
                      +|++|+|++|++++..+..   |.+++ +|++|+|++|. +++..+..|.++++|++|+|++ |++++..+..|.++++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~---~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHA---FSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             TCCEEEEESCCCSEECTTT---TTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             cccEEEEeCCcceEECHHH---ccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            6667777777776555545   55555 66677777775 6655555666667777777766 66665555666666666


Q ss_pred             CcccccccccccceEecCCCccccccchhhhccCCCC---eeecccc-cCCCCCCCCCCCCCCCC-EEEcCCCCCccCCc
Q 046036          114 QKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQ---ILNLSCN-HLGGSIPKPSGLFSTLS-SIDFAHNNFNGSLP  188 (614)
Q Consensus       114 ~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~  188 (614)
                      ++|+            +++|++++ +|. |..+++|+   +|++++| .+++..+..+..+++|+ .|++++|.++ .+|
T Consensus       108 ~~L~------------l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~  172 (239)
T 2xwt_C          108 KFLG------------IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ  172 (239)
T ss_dssp             CEEE------------EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EEC
T ss_pred             CEEe------------CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccC
Confidence            6665            66676664 443 66666666   7777777 66655555566777777 7777777776 333


Q ss_pred             ccccCCCCCceeccCCcc-CCCCccccccCc-ccchHHhccCccccccCCccccCCCccceEEccCC
Q 046036          189 LEVGSLSNTQELDFSEHM-LSDEIPITLGNR-SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHN  253 (614)
Q Consensus       189 ~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  253 (614)
                      ......++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|..  .+++|+.|+++++
T Consensus       173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            332233677777777774 766666667777 777777777777774 3432  5667777777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=1e-26  Score=239.97  Aligned_cols=256  Identities=18%  Similarity=0.194  Sum_probs=174.8

Q ss_pred             eeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcCh-hhhccccccccEEEccCCcccccCCCCCcCC-----CC
Q 046036           15 NLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSL-DSFTNLSTKLRILDAGGNQFAGDIPAGIPKY-----FN   88 (614)
Q Consensus        15 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l-----~~   88 (614)
                      .++|++|.+++.+|+.+...++|++|+|++|.+++..+..+ ..+.+++.+|++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46778888888888777777778888888888886554211 1145554368888888888876666666554     78


Q ss_pred             CCEEeccCCcCcccCCccccC----C-CCCCcccccccccccceEecCCCccccccchhhhc-----cCCCCeeeccccc
Q 046036           89 LIQLGLDRNCLAGSIPFSIGK----L-QNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN-----LTSLQILNLSCNH  158 (614)
Q Consensus        89 L~~L~L~~N~l~~~~p~~~~~----l-~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~  158 (614)
                      |++|+|++|.+++..+..+..    + ++|++|+            |++|++++..+..+..     .++|++|+|++|.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~------------Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD------------LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE------------CCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEE------------CcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            888888888887666654433    3 6676666            8888888766655543     2588888888888


Q ss_pred             CCCCCC----CCCCCCC-CCCEEEcCCCCCccCCccccc----CC-CCCceeccCCccCCCC----ccccccC-cccchH
Q 046036          159 LGGSIP----KPSGLFS-TLSSIDFAHNNFNGSLPLEVG----SL-SNTQELDFSEHMLSDE----IPITLGN-RSKFEH  223 (614)
Q Consensus       159 l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~ls~N~l~~~----~~~~~~~-l~~L~~  223 (614)
                      +++..+    ..+..++ +|++|+|++|.|++..+..+.    .+ ++|++|+|++|.+++.    ++..+.. .++|++
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence            874332    2223444 788888888888766665443    33 5888888888888763    3334444 347888


Q ss_pred             HhccCccccccCC----ccccCCCccceEEccCCcCcccC-------CcccCCCCCCCEEECcCCcCccc
Q 046036          224 LLLGGNMFQGRIP----PFFGSFKGTIDLNLSHNNLSGTI-------PKELETLPFLENLNLSFNNFEGQ  282 (614)
Q Consensus       224 L~L~~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~ls~N~l~~~  282 (614)
                      |+|++|.+++..+    ..+..+++|+.|+|++|.+.+..       +..+..+++|+.||+++|++...
T Consensus       230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            8888888775443    23456678888888888854332       23566777888888888887654

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.91  E-value=7.3e-25  Score=214.40  Aligned_cols=158  Identities=18%  Similarity=0.254  Sum_probs=107.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..|+||||| +|+|.+++..+   ..+++.....++.|+                  |+|||+++++.+||+|||+
T Consensus        83 ~~~~~~~ivmEy~-~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGl  158 (275)
T 3hyh_A           83 KSKDEIIMVIEYA-GNELFDYIVQR---DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGL  158 (275)
T ss_dssp             ECSSEEEEEEECC-CEEHHHHHHHS---CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSC
T ss_pred             EECCEEEEEEeCC-CCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCC
Confidence            4567789999999 68999999754   358888888888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      |+......        .....+||+.||| |.  ... ++.++||||+||++|||+||+.||.+...             
T Consensus       159 a~~~~~~~--------~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~-------------  217 (275)
T 3hyh_A          159 SNIMTDGN--------FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-------------  217 (275)
T ss_dssp             C-----------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------------
T ss_pred             CeecCCCC--------ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH-------------
Confidence            98765432        2345789999987 87  334 46899999999999999999999975311             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          .+........... .|.   ..+    +   .+.++..+|++.||++|||++|+++
T Consensus       218 ----~~~~~~i~~~~~~-~p~---~~s----~---~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          218 ----PVLFKNISNGVYT-LPK---FLS----P---GAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             ----HHHHHHHHHTCCC-CCT---TSC----H---HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ----HHHHHHHHcCCCC-CCC---CCC----H---HHHHHHHHHccCChhHCcCHHHHHc
Confidence                1111111111111 111   111    1   2235667999999999999999976

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.91  E-value=3.1e-25  Score=220.94  Aligned_cols=167  Identities=19%  Similarity=0.274  Sum_probs=106.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +.+.|+|||||++|+|.+++.........++.....|+.|+                  |+|||++.++.+||+|||+|+
T Consensus        87 ~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGla~  166 (299)
T 4g31_A           87 KVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVT  166 (299)
T ss_dssp             CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCCC-
T ss_pred             CcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCccce
Confidence            34579999999999999999876544556777666666665                  999999999999999999999


Q ss_pred             ccCCCCCCCC-----CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          455 FLPTNVTNPM-----KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       455 ~~~~~~~~~~-----~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      .+........     ......+..+||+.||| |.  ...++.++|||||||++|||++   ||......   .      
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~---~------  234 (299)
T 4g31_A          167 AMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMER---V------  234 (299)
T ss_dssp             -------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHH---H------
T ss_pred             ecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHH---H------
Confidence            8765432100     01122345789999987 87  6789999999999999999996   77532110   0      


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             ..+........      ++.    ..+......++..+|++.+|++|||+.|+++
T Consensus       235 -------~~~~~~~~~~~------p~~----~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          235 -------RTLTDVRNLKF------PPL----FTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             -------HHHHHHHTTCC------CHH----HHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -------HHHHHHhcCCC------CCC----CcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                   00101111000      011    1122223345777999999999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=2.7e-24  Score=208.42  Aligned_cols=196  Identities=16%  Similarity=0.180  Sum_probs=155.5

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCc-CcccCCccccCCCCCCcccccccccccceEecCC-Cccccccch
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNC-LAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAE-NNLTGNIPE  141 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~-N~l~~~~~~  141 (614)
                      +|++|+|++|++++..+..|.++++|++|+|++|+ +++..+..|.++++|++|+            |++ |++++..+.
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~------------l~~~n~l~~i~~~   99 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE------------IRNTRNLTYIDPD   99 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEE------------EEEETTCCEECTT
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEE------------CCCCCCeeEcCHH
Confidence            78899999999987777788899999999999997 8877777888888888887            888 889877777


Q ss_pred             hhhccCCCCeeecccccCCCCCCCCCCCCCCCC---EEEcCCC-CCccCCcccccCCCCCc-eeccCCccCCCCcccccc
Q 046036          142 SLENLTSLQILNLSCNHLGGSIPKPSGLFSTLS---SIDFAHN-NFNGSLPLEVGSLSNTQ-ELDFSEHMLSDEIPITLG  216 (614)
Q Consensus       142 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~ls~N~l~~~~~~~~~  216 (614)
                      .|..+++|++|++++|++++ +|. +..+++|+   +|++++| .+++..+..|..+++|+ .|++++|.++...+..|.
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence            88899999999999999885 665 77888888   8999998 88876667788888888 888888888744444444


Q ss_pred             CcccchHHhccCcc-ccccCCccccCC-CccceEEccCCcCcccCCcccCCCCCCCEEECcCC
Q 046036          217 NRSKFEHLLLGGNM-FQGRIPPFFGSF-KGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFN  277 (614)
Q Consensus       217 ~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N  277 (614)
                      . ++|+.|+|++|+ +++..+..|..+ ++|+.|++++|++++. |..  .+++|+.|+++++
T Consensus       178 ~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          178 G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            4 778888888884 776666677777 7888888888888743 332  5667777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=8e-24  Score=213.04  Aligned_cols=190  Identities=25%  Similarity=0.361  Sum_probs=88.3

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +|++|++++|.++ .+| .+..+++|++|+|++|.+++..+  +..+++|++|+            |++|++++.  ..+
T Consensus        42 ~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~------------L~~n~l~~~--~~~  103 (308)
T 1h6u_A           42 GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE------------LSGNPLKNV--SAI  103 (308)
T ss_dssp             TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE------------CCSCCCSCC--GGG
T ss_pred             CcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEE------------ccCCcCCCc--hhh
Confidence            4444444444443 222 24444444444444444442222  44444444333            444444422  134


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchH
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEH  223 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  223 (614)
                      ..+++|++|+|++|++++ ++. +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.
T Consensus       104 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  177 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT  177 (308)
T ss_dssp             TTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             cCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence            444444444444444442 221 4444455555555555443222  4445555555555555543322  445555555


Q ss_pred             HhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcc
Q 046036          224 LLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       224 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  281 (614)
                      |++++|.+++..+  +..+++|+.|+|++|++++..+  +..+++|+.|++++|++++
T Consensus       178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             EECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            5555555543222  4555566666666666654332  5556666666666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=3e-23  Score=202.54  Aligned_cols=179  Identities=21%  Similarity=0.235  Sum_probs=121.8

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCE
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ   91 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~   91 (614)
                      +.+.++++++.++ .+|..+.  ++|++|+|++|++++..+..   |.+++ +|++|+|++|.+++..|..|..+++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~---~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDAT---FRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTT---TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhH---hcCcc-cCCEEECCCCcCCccCHhHhccCCcCCE
Confidence            4566777777777 4555554  46777777777777666655   55565 7777777777777666666777777777


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCC
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS  171 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  171 (614)
                      |+|++|++++..+..|..+++|++|+            |++|+|++..+..|..+++|++|+|++|+|++..+..+..++
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~------------L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLY------------LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEE------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             EECCCCcccccChhHhcccCCCCEEE------------cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            77777777766666666666666665            777777766555666777777777777777755555666677


Q ss_pred             CCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCC
Q 046036          172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD  209 (614)
Q Consensus       172 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  209 (614)
                      +|++|+|++|.|++..+..|..+++|+.|+|++|.++.
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            77777777777766555566666677777777766654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=2.2e-23  Score=203.46  Aligned_cols=180  Identities=23%  Similarity=0.267  Sum_probs=103.4

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +.++++++++.++ .+|..+.  ++|++|+|++|.+++..+..|.++++|++|+            |++|.|++..+..|
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~------------L~~n~l~~~~~~~~   79 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLN------------LDYNQLQTLSAGVF   79 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEE------------CTTSCCCCCCTTTT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEE------------CCCCcCCccCHhHh
Confidence            4556677766665 4555444  3666666666666655555566555555555            66666665555555


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchH
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEH  223 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  223 (614)
                      ..+++|++|+|++|++++..+..+..+++|++|+|++|.|++..+..|..+++|++|+|++|                  
T Consensus        80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N------------------  141 (251)
T 3m19_A           80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN------------------  141 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------------------
T ss_pred             ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC------------------
Confidence            56666666666666665444444555555555555555555433333444444444444444                  


Q ss_pred             HhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCccc
Q 046036          224 LLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQ  282 (614)
Q Consensus       224 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  282 (614)
                            .+++..+..|+.+++|+.|+|++|++++..+..|..+++|+.|++++|++++.
T Consensus       142 ------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          142 ------QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ------cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                  44433344455566666666666666655555666666666666666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=5.8e-26  Score=231.99  Aligned_cols=221  Identities=16%  Similarity=0.171  Sum_probs=104.8

Q ss_pred             CCeeeecCCcccccCCcCCCCC--CCCcEEecccccCcccCCcChhhhccccccccEEEccCCccccc-CCCCCcCCCCC
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPT--SKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGD-IPAGIPKYFNL   89 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~-~p~~~~~l~~L   89 (614)
                      ++.|++++|.+.   +..+..+  ++++.|++++|.+++..+..    ..++ +|++|+|++|.+++. +|..+..+++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~----~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH----FSPF-RVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC----CCCB-CCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh----ccCC-CCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            445555555444   2333333  45555555555555443332    2333 555555555555433 44444555555


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCC-ccccc-cchhhhccCCCCeeecccc-cCCCC-CCC
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAEN-NLTGN-IPESLENLTSLQILNLSCN-HLGGS-IPK  165 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~p~  165 (614)
                      ++|+|++|.+++..+..++.+++|++|+            |++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~------------L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLN------------LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEE------------CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEE------------CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            5555555555544555555555555444            5555 34431 3444555555555555555 44422 233


Q ss_pred             CCCCCC-CCCEEEcCCC--CCc-cCCcccccCCCCCceeccCCcc-CCCCccccccCcccchHHhccCcc-ccccCCccc
Q 046036          166 PSGLFS-TLSSIDFAHN--NFN-GSLPLEVGSLSNTQELDFSEHM-LSDEIPITLGNRSKFEHLLLGGNM-FQGRIPPFF  239 (614)
Q Consensus       166 ~~~~l~-~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~  239 (614)
                      .+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence            344444 5555555555  233 2334444445555555555555 444444445555555555555553 111111134


Q ss_pred             cCCCccceEEccCC
Q 046036          240 GSFKGTIDLNLSHN  253 (614)
Q Consensus       240 ~~l~~L~~L~Ls~N  253 (614)
                      ..+++|+.|++++|
T Consensus       269 ~~~~~L~~L~l~~~  282 (336)
T 2ast_B          269 GEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGCTTCCEEECTTS
T ss_pred             hcCCCCCEEeccCc
Confidence            44555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=8.4e-26  Score=233.15  Aligned_cols=247  Identities=15%  Similarity=0.161  Sum_probs=191.9

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCC----cCCCCCC-CCcEEecccccCcccCCcChhhh-ccc-cccccEEEccCCc
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIP----SHLSPTS-KLTYLSLFSNNLHGIIPPSLDSF-TNL-STKLRILDAGGNQ   74 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~-~~l-~~~L~~L~L~~N~   74 (614)
                      .+|..+...++|++|+|++|.+++..+    +.|..++ +|++|+|++|++++..+..+..+ ... + +|++|+|++|.
T Consensus        13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~   91 (362)
T 3goz_A           13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNF   91 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSC
T ss_pred             HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-CccEEECcCCc
Confidence            355555666679999999999998777    7888898 99999999999998777664332 222 5 89999999999


Q ss_pred             ccccCCCCC----cCC-CCCCEEeccCCcCcccCCccccC-----CCCCCcccccccccccceEecCCCccccccc----
Q 046036           75 FAGDIPAGI----PKY-FNLIQLGLDRNCLAGSIPFSIGK-----LQNLQKLNPLATSLYSFQLNLAENNLTGNIP----  140 (614)
Q Consensus        75 l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~----  140 (614)
                      +++..+..+    ..+ ++|++|+|++|.+++..+..+..     .++|++|+            |++|+++...+    
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~------------Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN------------LRGNDLGIKSSDELI  159 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE------------CTTSCGGGSCHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE------------ccCCcCCHHHHHHHH
Confidence            987666544    444 89999999999998776655443     25777776            99999996444    


Q ss_pred             hhhhccC-CCCeeecccccCCCCCCCCC----CCC-CCCCEEEcCCCCCccC----CcccccC-CCCCceeccCCccCCC
Q 046036          141 ESLENLT-SLQILNLSCNHLGGSIPKPS----GLF-STLSSIDFAHNNFNGS----LPLEVGS-LSNTQELDFSEHMLSD  209 (614)
Q Consensus       141 ~~~~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~ls~N~l~~  209 (614)
                      ..+..++ +|++|+|++|++++..+..+    ... ++|++|+|++|.|+..    ++..+.. .++|++|+|++|.+++
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            4455665 99999999999986655433    344 5999999999999863    4445555 4599999999999987


Q ss_pred             Ccc----ccccCcccchHHhccCccccccCC-------ccccCCCccceEEccCCcCcccCCc
Q 046036          210 EIP----ITLGNRSKFEHLLLGGNMFQGRIP-------PFFGSFKGTIDLNLSHNNLSGTIPK  261 (614)
Q Consensus       210 ~~~----~~~~~l~~L~~L~L~~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~  261 (614)
                      ..+    ..+..+++|+.|+|++|.+.+..+       ..+..+++|+.||+++|++....+.
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            655    345778999999999999654333       3567889999999999999876443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1.4e-23  Score=211.20  Aligned_cols=211  Identities=20%  Similarity=0.293  Sum_probs=150.6

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      +..+.+..+.+++.++  +..+++|++|++++|.++. +| .   +..++ +|++|+|++|.+++. +. +..+++|++|
T Consensus        21 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~---~~~l~-~L~~L~L~~n~i~~~-~~-~~~l~~L~~L   90 (308)
T 1h6u_A           21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-G---VQYLN-NLIGLELKDNQITDL-AP-LKNLTKITEL   90 (308)
T ss_dssp             HHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-T---GGGCT-TCCEEECCSSCCCCC-GG-GTTCCSCCEE
T ss_pred             HHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-h---hhccC-CCCEEEccCCcCCCC-hh-HccCCCCCEE
Confidence            3344555555554332  4567778888888887773 34 3   56666 788888888888743 33 7778888888


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                      +|++|++++. + .+..+++|++|+            |++|++++. + .+..+++|++|++++|.+++..+  +..+++
T Consensus        91 ~L~~n~l~~~-~-~~~~l~~L~~L~------------l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~  152 (308)
T 1h6u_A           91 ELSGNPLKNV-S-AIAGLQSIKTLD------------LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN  152 (308)
T ss_dssp             ECCSCCCSCC-G-GGTTCTTCCEEE------------CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred             EccCCcCCCc-h-hhcCCCCCCEEE------------CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC
Confidence            8888887743 3 577777777666            888888753 3 37788888888888888874433  677788


Q ss_pred             CCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccC
Q 046036          173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSH  252 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  252 (614)
                      |+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|+|++|++++..  .+..+++|+.|++++
T Consensus       153 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             ccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccC
Confidence            8888888888875333  7778888888888888876544  777888888888888887544  377888888888888


Q ss_pred             CcCcc
Q 046036          253 NNLSG  257 (614)
Q Consensus       253 N~l~~  257 (614)
                      |++++
T Consensus       227 N~i~~  231 (308)
T 1h6u_A          227 QTITN  231 (308)
T ss_dssp             EEEEC
T ss_pred             Ceeec
Confidence            88874

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.90  E-value=1e-23  Score=213.89  Aligned_cols=190  Identities=21%  Similarity=0.350  Sum_probs=135.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      +..++..++||||+++|+|.+++.... ....++|..+.+++.++                  |+||+++.++.+||+||
T Consensus       104 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Df  183 (321)
T 2qkw_B          104 CDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDF  183 (321)
T ss_dssp             CCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCC
T ss_pred             EcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeec
Confidence            344667899999999999999997643 23469999999988877                  99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCccccc-CchHHHHHHh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFAD-CLSLHNFCEM  526 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~-~~~l~~~~~~  526 (614)
                      |+++........     .......||+.|+| |.  ...++.++|||||||++|||+||+.||...... ......|...
T Consensus       184 g~~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~  258 (321)
T 2qkw_B          184 GISKKGTELDQT-----HLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVE  258 (321)
T ss_dssp             TTCEECSSSSCC-----CCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHH
T ss_pred             cccccccccccc-----ccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhh
Confidence            999875433221     22344679999977 87  678899999999999999999999999764332 2223333322


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                      .....       .+.....+..  +...   ..+....+.+++..|++.+|++|||+.||++.|+.+.+.
T Consensus       259 ~~~~~-------~~~~~~~~~~--~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          259 SHNNG-------QLEQIVDPNL--ADKI---RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             HHTTT-------CCCSSSSSSC--TTCS---CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ccccc-------cHHHhcChhh--cccc---CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence            11110       0001111100  0001   134556677888999999999999999999999987653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=2.5e-25  Score=227.24  Aligned_cols=239  Identities=16%  Similarity=0.188  Sum_probs=196.6

Q ss_pred             cccCC--CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCccc-CCcChhhhccccccccEEEccCCcccccCCCC
Q 046036            6 EIGNL--FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGI-IPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         6 ~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      .+.++  ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..   +..++ +|++|+|++|.+++..+..
T Consensus        63 ~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~---~~~~~-~L~~L~L~~~~l~~~~~~~  137 (336)
T 2ast_B           63 VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI---LSQCS-KLQNLSLEGLRLSDPIVNT  137 (336)
T ss_dssp             HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH---HTTBC-CCSEEECTTCBCCHHHHHH
T ss_pred             HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH---HhhCC-CCCEEeCcCcccCHHHHHH
Confidence            34445  8999999999999987765 56799999999999999865 6655   67787 9999999999999888888


Q ss_pred             CcCCCCCCEEeccCC-cCccc-CCccccCCCCCCcccccccccccceEecCCC-ccccc-cchhhhccC-CCCeeecccc
Q 046036           83 IPKYFNLIQLGLDRN-CLAGS-IPFSIGKLQNLQKLNPLATSLYSFQLNLAEN-NLTGN-IPESLENLT-SLQILNLSCN  157 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~L~~N  157 (614)
                      +..+++|++|+|++| .+++. ++..+..+++|++|+            +++| .+++. ++..+..++ +|++|+|++|
T Consensus       138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~------------l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN------------LSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE------------CCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc------------CCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            999999999999999 68763 677788899999887            9999 99865 677899999 9999999999


Q ss_pred             --cCC-CCCCCCCCCCCCCCEEEcCCCC-CccCCcccccCCCCCceeccCCcc-CCCCccccccCcccchHHhccCcccc
Q 046036          158 --HLG-GSIPKPSGLFSTLSSIDFAHNN-FNGSLPLEVGSLSNTQELDFSEHM-LSDEIPITLGNRSKFEHLLLGGNMFQ  232 (614)
Q Consensus       158 --~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  232 (614)
                        .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| ++
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence              455 3456667789999999999999 787888899999999999999995 43333336888999999999999 33


Q ss_pred             ccCCccccCC-CccceEEccCCcCcccCCcccCC
Q 046036          233 GRIPPFFGSF-KGTIDLNLSHNNLSGTIPKELET  265 (614)
Q Consensus       233 ~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~  265 (614)
                         ...+..+ ..+..|++++|++++..|..++.
T Consensus       285 ---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          285 ---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             ---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             ---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence               2234444 34777778999999888876654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=3.3e-23  Score=212.59  Aligned_cols=241  Identities=16%  Similarity=0.078  Sum_probs=173.5

Q ss_pred             CeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCC-CCCcCCCCCCE-
Q 046036           14 QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIP-AGIPKYFNLIQ-   91 (614)
Q Consensus        14 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-   91 (614)
                      +.++.++++++ .+|..+  .+++++|+|++|+|+.+.+..   |.+++ +|++|+|++|++.+.+| ..|.++++|.+ 
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~---f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGA---FSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTS---STTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHH---HcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            56788888888 667666  357888888888888555556   67776 88888888888765555 45778887765 


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeeccc-ccCCCCCCCCCCCC
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSC-NHLGGSIPKPSGLF  170 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l  170 (614)
                      +.++.|+++...|..|..+++|++|+            +++|+++...+..+....++..|++.+ |++....+..+..+
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~------------l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~  152 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLL------------ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL  152 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEE------------EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred             hcccCCcccccCchhhhhcccccccc------------ccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence            56667888877788888888888777            888888877776777777888888865 56664444555555


Q ss_pred             C-CCCEEEcCCCCCccCCcccccCCCCCceeccCC-ccCCCCccccccCcccchHHhccCccccccCCccccCCCccceE
Q 046036          171 S-TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSE-HMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL  248 (614)
Q Consensus       171 ~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  248 (614)
                      . .++.|+|++|.|+. ++.......+|+.|++++ |.++.+.+..|..+++|+.|+|++|+|+...+..|.   +|+.|
T Consensus       153 ~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L  228 (350)
T 4ay9_X          153 SFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKL  228 (350)
T ss_dssp             BSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEE
T ss_pred             chhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHh
Confidence            4 57888888888884 444444567788888875 566655556788888899999999988854444444   44555


Q ss_pred             EccCCcCcccCCcccCCCCCCCEEECcCCc
Q 046036          249 NLSHNNLSGTIPKELETLPFLENLNLSFNN  278 (614)
Q Consensus       249 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~  278 (614)
                      .+.++.--..+| .+..+++|+.++++++.
T Consensus       229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          229 RARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             ECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             hhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            544443333566 37788889999887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=2.7e-23  Score=213.27  Aligned_cols=245  Identities=16%  Similarity=0.117  Sum_probs=192.8

Q ss_pred             cEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCC-ccccCCCCCCcc
Q 046036           38 TYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIP-FSIGKLQNLQKL  116 (614)
Q Consensus        38 ~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L  116 (614)
                      ++++-++|+++ .+|..+      ++++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|+++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCC-ccCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            67889999999 678763      2389999999999996666789999999999999999876665 568888887754


Q ss_pred             cccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCC-CCCccCCcccccCCC
Q 046036          117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAH-NNFNGSLPLEVGSLS  195 (614)
Q Consensus       117 ~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~  195 (614)
                      .           .++.|+|+...|..|..+++|++|++++|++....+..+....++..|++.+ |.+....+..|..+.
T Consensus        85 l-----------~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~  153 (350)
T 4ay9_X           85 R-----------IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  153 (350)
T ss_dssp             E-----------EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             h-----------cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence            2           3778999988889999999999999999999976666677777888999866 567766666677764


Q ss_pred             -CCceeccCCccCCCCccccccCcccchHHhccC-ccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEE
Q 046036          196 -NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG-NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLN  273 (614)
Q Consensus       196 -~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  273 (614)
                       .++.|+|++|+|+.+.+..| ...+|+.|++++ |.++...++.|..+++|+.|||++|+|+...+..   +.+|+.|.
T Consensus       154 ~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~  229 (350)
T 4ay9_X          154 FESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLR  229 (350)
T ss_dssp             SSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEE
T ss_pred             hhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhh
Confidence             68899999999986555444 567899999975 6777555567899999999999999999654444   45666676


Q ss_pred             CcCCcCcccCCCccccCCCceEEEecCCCccc
Q 046036          274 LSFNNFEGQLPSMSVFTNTSVISIVGNGKLCG  305 (614)
Q Consensus       274 ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~  305 (614)
                      +.++.--..+|....++++..+++. +++.|.
T Consensus       230 ~l~~~~l~~lP~l~~l~~L~~l~l~-~~~~c~  260 (350)
T 4ay9_X          230 ARSTYNLKKLPTLEKLVALMEASLT-YPSHCC  260 (350)
T ss_dssp             CTTCTTCCCCCCTTTCCSCCEEECS-CHHHHH
T ss_pred             hccCCCcCcCCCchhCcChhhCcCC-CCcccc
Confidence            6665544567778888999888874 556663

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.89  E-value=3.9e-23  Score=209.62  Aligned_cols=188  Identities=19%  Similarity=0.183  Sum_probs=130.4

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC----------------------------CCceeeCCCCCe
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI----------------------------PSNVLLDYDMTA  445 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i----------------------------~~NILld~~~~~  445 (614)
                      ...++|||||++|+|.++++..    .++|..+.+++.++                            |+|||++.++.+
T Consensus        95 ~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~  170 (322)
T 3soc_A           95 VDLWLITAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTA  170 (322)
T ss_dssp             EEEEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCE
T ss_pred             ceEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeE
Confidence            3469999999999999999753    48888888777654                            899999999999


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc-c------CCCCccCceeehhHHHHHHHhCCCCCCcccccC
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADC  517 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~  517 (614)
                      ||+|||+++........     .......||+.|+| |. .      ..++.++|||||||++|||+||+.||.......
T Consensus       171 kL~DFg~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~  245 (322)
T 3soc_A          171 CIADFGLALKFEAGKSA-----GDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEY  245 (322)
T ss_dssp             EECCCTTCEEECTTSCC-----CCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCC
T ss_pred             EEccCCcccccccccCc-----cccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchh
Confidence            99999999877654321     22344689999977 87 2      356678999999999999999999997643322


Q ss_pred             chHHHHHHh-hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          518 LSLHNFCEM-ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       518 ~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                      ...  +... .......+..+........+....  .+.  ...+...+.+++..|++.+|++|||+.||++.|+++++.
T Consensus       246 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          246 MLP--FEEEIGQHPSLEDMQEVVVHKKKRPVLRD--YWQ--KHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             CCT--THHHHCSSCCHHHHHHHHTTSCCCCCCCG--GGG--SSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccc--hhhhhccCCchhhhhhhhhcccCCCCccc--ccc--ccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            111  1111 111122222322222222211111  111  023445577888999999999999999999999998865

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.88  E-value=2.4e-23  Score=211.56  Aligned_cols=184  Identities=29%  Similarity=0.404  Sum_probs=134.7

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC---------------------CCceeeCCCCCeee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI---------------------PSNVLLDYDMTAYV  447 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i---------------------~~NILld~~~~~kl  447 (614)
                      +..++..++|||||++|+|.++++... ....++|..+..|+.++                     |+|||++.++.+||
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl  175 (326)
T 3uim_A           96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV  175 (326)
T ss_dssp             ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred             EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence            344667899999999999999998654 33458999888887655                     89999999999999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCccc---ccCchHH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMF---ADCLSLH  521 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~---~~~~~l~  521 (614)
                      +|||+++.......      .......||++|+| |.  ...++.++|||||||+++||+||+.||+...   .......
T Consensus       176 ~Dfg~~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~  249 (326)
T 3uim_A          176 GDFGLAKLMDYKDT------HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLL  249 (326)
T ss_dssp             CCCSSCEECCSSSS------CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHH
T ss_pred             ccCccccccCcccc------cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHH
Confidence            99999987754332      22344669999977 87  6778999999999999999999999996421   1223344


Q ss_pred             HHHHhhCCCC-hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          522 NFCEMALPES-VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       522 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                      .|........ .....+..+...          .   ..+....+.+++..|++.+|++|||+.||+++|+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          250 DWVKGLLKEKKLEALVDVDLQGN----------Y---KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             HHHTTTTSSCCSTTSSCTTCTTS----------C---CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             HHHHHHhhchhhhhhcChhhccc----------c---CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence            5554443322 111111111110          1   13456677889999999999999999999999975

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.88  E-value=5.2e-23  Score=207.21  Aligned_cols=185  Identities=25%  Similarity=0.318  Sum_probs=132.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++........++|..+.+++.++                  |+||++++++.+||+|||+
T Consensus       100 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~  179 (307)
T 2nru_A          100 SDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGL  179 (307)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             ecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeeccc
Confidence            3456789999999999999999754444569999998888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC--
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL--  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~--  528 (614)
                      ++........     .......||+.|+| |. .+.++.++|||||||+++||+||+.||....... .+..+.....  
T Consensus       180 ~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~  253 (307)
T 2nru_A          180 ARASEKFAQT-----VMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQ-LLLDIKEEIEDE  253 (307)
T ss_dssp             CEECCSCSSC-----EECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS-BTTHHHHHHHTT
T ss_pred             cccccccccc-----ccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcchH-HHHHHHHHhhhh
Confidence            9876543221     12334679999977 87 6678999999999999999999999997643221 1112211111  


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      ...+.+.+++.+..       .       .......+.+++..|++.+|++|||++||++.|++++.
T Consensus       254 ~~~~~~~~~~~~~~-------~-------~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          254 EKTIEDYIDKKMND-------A-------DSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             SCCHHHHSCSSCSC-------C-------CHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             hhhhhhhccccccc-------c-------chHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            11122211111100       0       02344556678899999999999999999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=5.6e-22  Score=187.65  Aligned_cols=162  Identities=20%  Similarity=0.117  Sum_probs=93.8

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+            |++|++++..+..|
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN------------LSTNQLQSLPNGVF   96 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE------------CCSSCCCCCCTTTT
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE------------CCCCcCCccCHhHh
Confidence            455555555555544444455555555555555555544444455555555554            55555554444455


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchH
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEH  223 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  223 (614)
                      ..+++|++|+|++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+       .+++|+.
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~  169 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY  169 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHH
T ss_pred             cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHH
Confidence            566666666666666664444445566666666666666665444445666666666666665543       3446677


Q ss_pred             HhccCccccccCCccccCCCc
Q 046036          224 LLLGGNMFQGRIPPFFGSFKG  244 (614)
Q Consensus       224 L~L~~N~l~~~~p~~~~~l~~  244 (614)
                      |+++.|.++|.+|.+++.++.
T Consensus       170 L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          170 LSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HHHHHHHCTTTBBCTTSSBCT
T ss_pred             HHHHHHhCCceeeccCccccC
Confidence            777777777777776665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=6.7e-22  Score=187.09  Aligned_cols=182  Identities=22%  Similarity=0.207  Sum_probs=157.4

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      -+.++.+++.++ .+|..+  .++|++|+|++|++++..+..   |.+++ +|++|+|++|++++..+..|..+++|++|
T Consensus         9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~---~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGV---FDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTT---TTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhh---hcccc-cCcEEECCCCccCccChhhcCCCCCcCEE
Confidence            367888999988 556554  458999999999999766666   67777 99999999999997666678999999999


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                      +|++|++++..+..|..+++|++|+            |++|++++..+..|..+++|++|+|++|++++..+..+..+++
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~------------L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  149 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELA------------LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  149 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEE------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEE------------cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence            9999999977777789999999887            9999999887778999999999999999999777777899999


Q ss_pred             CCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCccc
Q 046036          173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSK  220 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~  220 (614)
                      |++|++++|.+.+       .+++|+.|+++.|+++|.+|..++.++.
T Consensus       150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            9999999998874       4568999999999999999999887765

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.88  E-value=2.4e-23  Score=215.39  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=120.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..|+|||||+ |+|.+++...   ..+++.....|+.++                  |+|||++.++.+||+|||+
T Consensus       129 ~~~~~~~ivmE~~~-g~L~~~i~~~---~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGl  204 (398)
T 4b99_A          129 GEFKSVYVVLDLME-SDLHQIIHSS---QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGM  204 (398)
T ss_dssp             TTCCCEEEEEECCS-EEHHHHHTSS---SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ccCCEEEEEEeCCC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecce
Confidence            34567899999996 7899999854   368998888888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      |+.+......   .....+..+||+.|+| |.   ...++.++||||+||+++||+||+.||.+..... .+........
T Consensus       205 a~~~~~~~~~---~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~-~l~~I~~~~g  280 (398)
T 4b99_A          205 ARGLCTSPAE---HQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVH-QLQLIMMVLG  280 (398)
T ss_dssp             CBCC----------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHH-HHHHHHHHHC
T ss_pred             eeecccCccc---cccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHH-HHHHHHHhcC
Confidence            9976543211   1123456799999977 87   3457899999999999999999999997632211 1111111111


Q ss_pred             --CCC-hH----HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 --PES-VM----ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 --~~~-~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                        +.. ..    ......+.......+.   .+.......-..+.++...|+..||++|||+.|+++
T Consensus       281 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          281 TPSPAVIQAVGAERVRAYIQSLPPRQPV---PWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             CCCGGGTC-----CHHHHHHSSCCCCCC---CHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCChHHhhhhhhhhhhhhhhcCCCcCCC---CHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence              111 00    0111111111111111   111111111123446777999999999999999875

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.88  E-value=3.2e-23  Score=214.01  Aligned_cols=184  Identities=14%  Similarity=0.155  Sum_probs=132.9

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC--CCCCeeecccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD--YDMTAYVGDFGLA  453 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld--~~~~~kl~DfGla  453 (614)
                      ...++||||| +|+|.+++...  ...++|..+..|+.++                  |+|||++  .++.+||+|||++
T Consensus       125 ~~~~lv~e~~-g~~L~~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a  201 (364)
T 3op5_A          125 SYRFMIMDRF-GSDLQKIYEAN--AKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLA  201 (364)
T ss_dssp             EEEEEEEECE-EEEHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTC
T ss_pred             ceEEEEEeCC-CCCHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcc
Confidence            5579999999 99999999753  3469999999998888                  9999999  8899999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.+..................||+.|+| |.  ...++.++|||||||++|||+||+.||...... .....+.......
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~-~~~~~~~~~~~~~  280 (364)
T 3op5_A          202 YRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD-PKYVRDSKIRYRE  280 (364)
T ss_dssp             EESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC-HHHHHHHHHHHHH
T ss_pred             eecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC-HHHHHHHHHHhhh
Confidence            8776443221111112234669999977 87  567899999999999999999999999853222 2222223322223


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                      ...+.+++.+...                .....+.+++..|++.+|++||++.++++.|+.+....
T Consensus       281 ~~~~~~~~~~~~~----------------~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~  331 (364)
T 3op5_A          281 NIASLMDKCFPAA----------------NAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAI  331 (364)
T ss_dssp             CHHHHHHHHSCTT----------------CCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHhcccc----------------cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHc
Confidence            3334443333110                01223446777999999999999999999999887764

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.87  E-value=3.5e-23  Score=223.50  Aligned_cols=112  Identities=25%  Similarity=0.355  Sum_probs=95.2

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..|+|||||++|+|.++|...   ..+++.....++.+|                  |+|||||.++++||+|||
T Consensus       261 f~~~~~lylVmEy~~GGdL~~~l~~~---~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFG  337 (689)
T 3v5w_A          261 FHTPDKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLG  337 (689)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             EEECCEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccc
Confidence            34577899999999999999999753   358888887777777                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +|+.+....         ....+||+.||| |+  . ..|+.++||||+||++|||+||+.||.+.
T Consensus       338 lA~~~~~~~---------~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~  394 (689)
T 3v5w_A          338 LACDFSKKK---------PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  394 (689)
T ss_dssp             TCEECSSCC---------CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGG
T ss_pred             eeeecCCCC---------CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            998775432         334789999988 87  2 46899999999999999999999999753

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.87  E-value=1.8e-22  Score=208.61  Aligned_cols=177  Identities=19%  Similarity=0.291  Sum_probs=129.1

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCcee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVL  438 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NIL  438 (614)
                      +..++..++||||+++|+|.+++.....             ...++|..+.+++.++                  |+|||
T Consensus       156 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl  235 (370)
T 2psq_A          156 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVL  235 (370)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE
T ss_pred             EccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEE
Confidence            3456678999999999999999975431             2358898888888777                  99999


Q ss_pred             eCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccc
Q 046036          439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMF  514 (614)
Q Consensus       439 ld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~  514 (614)
                      ++.++.+||+|||+++........     .......||+.|+| |.  ...++.++|||||||++|||+| |+.||....
T Consensus       236 l~~~~~~kl~DFG~a~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~  310 (370)
T 2psq_A          236 VTENNVMKIADFGLARDINNIDYY-----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP  310 (370)
T ss_dssp             ECTTCCEEECCCSSCEETTCCCTT-----CTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ECCCCCEEEccccCCcccCcccce-----ecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999876543321     22344668899977 87  6778999999999999999999 999997532


Q ss_pred             ccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                      ..  .+               .. .+.........  .       .+...+.+++..|++.+|++||++.|+++.|+.+.
T Consensus       311 ~~--~~---------------~~-~~~~~~~~~~~--~-------~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il  363 (370)
T 2psq_A          311 VE--EL---------------FK-LLKEGHRMDKP--A-------NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  363 (370)
T ss_dssp             GG--GH---------------HH-HHHTTCCCCCC--T-------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HH--HH---------------HH-HHhcCCCCCCC--C-------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            21  11               11 11111110000  0       11123446777999999999999999999999987


Q ss_pred             HHhh
Q 046036          595 EVLL  598 (614)
Q Consensus       595 ~~~~  598 (614)
                      ....
T Consensus       364 ~~~~  367 (370)
T 2psq_A          364 TLTT  367 (370)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            6543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.87  E-value=1.8e-22  Score=203.42  Aligned_cols=173  Identities=22%  Similarity=0.269  Sum_probs=115.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeCCCCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld~~~~~kl~Df  450 (614)
                      ...+..++||||+++|+|.+++........+++..+..++.++                    |+||+++.++.+||+||
T Consensus       104 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Df  183 (309)
T 3p86_A          104 TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDF  183 (309)
T ss_dssp             CSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCC
T ss_pred             EECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCC
Confidence            3456689999999999999999865433458888888877665                    89999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+++......       .......||+.|+| |.  ...++.++|||||||++|||+||+.||......           
T Consensus       184 g~a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~-----------  245 (309)
T 3p86_A          184 GLSRLKASTF-------LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA-----------  245 (309)
T ss_dssp             C------------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH-----------
T ss_pred             CCCccccccc-------cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----------
Confidence            9998654332       12345689999977 87  667899999999999999999999999753211           


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                            +...............  ...       -..+.++...|++.+|++|||++|+++.|+.+...
T Consensus       246 ------~~~~~~~~~~~~~~~~--~~~-------~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          246 ------QVVAAVGFKCKRLEIP--RNL-------NPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             ------HHHHHHHHSCCCCCCC--TTS-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             ------HHHHHHHhcCCCCCCC--ccC-------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence                  1111111111100000  011       11344677799999999999999999999877644

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.87  E-value=1.4e-22  Score=207.33  Aligned_cols=117  Identities=21%  Similarity=0.319  Sum_probs=89.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC-CCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD-MTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~-~~~kl~DfG  451 (614)
                      ..++..++|||||++|+|.+++.      .+++.+...++.++                  |+|||++.+ +.+||+|||
T Consensus        90 ~~~~~~~lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFG  163 (361)
T 4f9c_A           90 RKNDHVVIAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFG  163 (361)
T ss_dssp             EETTEEEEEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             EECCEEEEEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCC
Confidence            34677899999999999999995      37777777777777                  999999977 799999999


Q ss_pred             cccccCCCCCCCC---------------------CCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhC
Q 046036          452 LARFLPTNVTNPM---------------------KGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTG  506 (614)
Q Consensus       452 la~~~~~~~~~~~---------------------~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG  506 (614)
                      +|+..........                     ......+..+||++|+| |.  . ..++.++||||+||+++||+||
T Consensus       164 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G  243 (361)
T 4f9c_A          164 LAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSG  243 (361)
T ss_dssp             TCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred             CCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHC
Confidence            9986643321000                     00112334689999977 87  3 3589999999999999999999


Q ss_pred             CCCCCcc
Q 046036          507 KRPTDEM  513 (614)
Q Consensus       507 ~~p~~~~  513 (614)
                      +.||...
T Consensus       244 ~~Pf~~~  250 (361)
T 4f9c_A          244 RYPFYKA  250 (361)
T ss_dssp             CSSSSCC
T ss_pred             CCCCCCC
Confidence            9999653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.86  E-value=3.7e-22  Score=216.73  Aligned_cols=164  Identities=16%  Similarity=0.193  Sum_probs=120.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC--CCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD--MTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~--~~~kl~Df  450 (614)
                      ..++..++|||||++|+|.++|...  ...+++.....++.|+                  |+|||++.+  +.+||+||
T Consensus       224 ~~~~~~~iv~E~~~gg~L~~~i~~~--~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DF  301 (573)
T 3uto_A          224 EDDNEMVMIYEFMSGGELFEKVADE--HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDF  301 (573)
T ss_dssp             ECSSEEEEEEECCCCCBHHHHHTCT--TSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCC
T ss_pred             EECCEEEEEEeecCCCcHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeec
Confidence            4567889999999999999999753  2358888888887776                  999999854  89999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+|+.+....        .....+||+.||| |.  ...++.++||||+||++|||++|+.||.+...            
T Consensus       302 G~a~~~~~~~--------~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~------------  361 (573)
T 3uto_A          302 GLTAHLDPKQ--------SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND------------  361 (573)
T ss_dssp             SSCEECCTTS--------EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH------------
T ss_pred             cceeEccCCC--------ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH------------
Confidence            9999876542        2445789999987 87  67789999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+.................+..       .+.++...|++.||++|||+.|+++
T Consensus       362 -----~~~~~~i~~~~~~~~~~~~~~~s~-------~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          362 -----DETLRNVKSCDWNMDDSAFSGISE-------DGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             -----HHHHHHHHTTCCCCCSGGGTTSCH-------HHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -----HHHHHHHHhCCCCCCcccccCCCH-------HHHHHHHHHccCChhHCcCHHHHhc
Confidence                 122222222222211111111221       2335667999999999999999976

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.86  E-value=1.6e-22  Score=202.92  Aligned_cols=177  Identities=19%  Similarity=0.233  Sum_probs=121.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------------CCceeeCCCCCee
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------------PSNVLLDYDMTAY  446 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------------~~NILld~~~~~k  446 (614)
                      ....++||||+++|+|.++++..    .++|..+.+++.++                          |+|||++.++.+|
T Consensus        78 ~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~k  153 (301)
T 3q4u_A           78 STQLWLITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCC  153 (301)
T ss_dssp             EEEEEEEECCCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEE
T ss_pred             CceeEEehhhccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEE
Confidence            45578999999999999999643    48888877776554                          8999999999999


Q ss_pred             ecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cC------CCCccCceeehhHHHHHHHhC----------C
Q 046036          447 VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA------RYQHKGKGYSCGILLLEIMTG----------K  507 (614)
Q Consensus       447 l~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~------~~~~k~DVySfGvvllElltG----------~  507 (614)
                      |+|||+++........   .........||+.|+| |.  ..      .++.++|||||||++|||+||          +
T Consensus       154 l~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~  230 (301)
T 3q4u_A          154 IADLGLAVMHSQSTNQ---LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYK  230 (301)
T ss_dssp             ECCCTTCEEEETTTTE---EECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCC
T ss_pred             EeeCCCeeeccccccc---ccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccc
Confidence            9999999876543221   0011233579999977 87  22      455799999999999999999          7


Q ss_pred             CCCCcccccCchHHHHHHhhCCCChHHHHHHHHhc-CcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHH
Q 046036          508 RPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQ-GVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREM  586 (614)
Q Consensus       508 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev  586 (614)
                      .||.........             .+.+...+.. ...+.... ....   ......+.+++..|++.+|++|||+.||
T Consensus       231 ~pf~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~l~~li~~cl~~dP~~Rps~~~i  293 (301)
T 3q4u_A          231 PPFYDVVPNDPS-------------FEDMRKVVCVDQQRPNIPN-RWFS---DPTLTSLAKLMKECWYQNPSARLTALRI  293 (301)
T ss_dssp             CTTTTTSCSSCC-------------HHHHHHHHTTSCCCCCCCG-GGGG---SHHHHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred             ccccccCCCCcc-------------hhhhhHHHhccCCCCCCCh-hhcc---CccHHHHHHHHHHHhhcChhhCCCHHHH
Confidence            777543322211             1112222111 11111110 0011   1344566688899999999999999999


Q ss_pred             HHHHHHh
Q 046036          587 VMEMNVI  593 (614)
Q Consensus       587 ~~~L~~i  593 (614)
                      ++.|+++
T Consensus       294 ~~~L~~i  300 (301)
T 3q4u_A          294 KKTLTKI  300 (301)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9999876

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.86  E-value=1.6e-22  Score=209.68  Aligned_cols=172  Identities=19%  Similarity=0.268  Sum_probs=124.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.++++..  ...+++..+.+++.++                  |+|||++.++.+||+|||+
T Consensus       182 ~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~  259 (377)
T 3cbl_A          182 TQKQPIYIVMELVQGGDFLTFLRTE--GARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGM  259 (377)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGG
T ss_pred             ecCCCcEEEEEcCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCC
Confidence            3456789999999999999999753  3358888888888777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++........     .......+++.|+| |.  ...++.++|||||||++|||+| |+.||......            
T Consensus       260 s~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~------------  322 (377)
T 3cbl_A          260 SREEADGVYA-----ASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ------------  322 (377)
T ss_dssp             CEECTTSEEE-----CCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH------------
T ss_pred             ceecCCCcee-----ecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH------------
Confidence            9865432110     11122346778977 87  6778999999999999999999 99999753211            


Q ss_pred             CCChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          529 PESVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                           +. ...+..... +.|.          .+...+.+++..||+.+|++|||++++++.|+.++...
T Consensus       323 -----~~-~~~~~~~~~~~~~~----------~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~~  376 (377)
T 3cbl_A          323 -----QT-REFVEKGGRLPCPE----------LCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRH  376 (377)
T ss_dssp             -----HH-HHHHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             -----HH-HHHHHcCCCCCCCC----------CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhhc
Confidence                 11 111111111 1111          11123446778999999999999999999999998654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=1.3e-21  Score=211.31  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=18.8

Q ss_pred             ceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccC
Q 046036          246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQL  283 (614)
Q Consensus       246 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  283 (614)
                      +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            55555555555 34444444555555555555555443

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.86  E-value=3.2e-22  Score=206.93  Aligned_cols=174  Identities=21%  Similarity=0.339  Sum_probs=115.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.++++..  ...++|..+..++.++                  |+|||++.++.+||+|||+
T Consensus       116 ~~~~~~~lv~e~~~~~sL~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~  193 (373)
T 2qol_A          116 TKSKPVMIVTEYMENGSLDSFLRKH--DAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGL  193 (373)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC--
T ss_pred             eeCCceEEEEeCCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCcc
Confidence            3456789999999999999999754  3458999998888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++........    ........+++.|+| |.  ...++.++|||||||++||+++ |+.||......            
T Consensus       194 a~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~------------  257 (373)
T 2qol_A          194 GRVLEDDPEA----AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ------------  257 (373)
T ss_dssp             ------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH------------
T ss_pred             ccccccCCcc----ceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH------------
Confidence            9877543221    011223346778977 87  6788999999999999999998 99999753211            


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                           +... .+.......+.         .++...+.+++..|++.+|++||+|.||++.|+.+....
T Consensus       258 -----~~~~-~i~~~~~~~~~---------~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~  311 (373)
T 2qol_A          258 -----DVIK-AVDEGYRLPPP---------MDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP  311 (373)
T ss_dssp             -----HHHH-HHHTTEECCCC---------TTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred             -----HHHH-HHHcCCCCCCC---------ccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence                 1111 11111111000         012234557788999999999999999999999887643

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.86  E-value=7e-22  Score=205.31  Aligned_cols=179  Identities=22%  Similarity=0.291  Sum_probs=131.6

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCcee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVL  438 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NIL  438 (614)
                      +..++..++||||+++|+|.+++.....             ...+++..+.+|+.++                  |+|||
T Consensus       144 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl  223 (382)
T 3tt0_A          144 CTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  223 (382)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             eccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEE
Confidence            3446678999999999999999975431             2358999999988887                  99999


Q ss_pred             eCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccc
Q 046036          439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMF  514 (614)
Q Consensus       439 ld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~  514 (614)
                      +++++.+||+|||+++........     .......||++|+| |.  ...++.++|||||||+++||+| |+.||....
T Consensus       224 l~~~~~~kL~DFG~a~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~  298 (382)
T 3tt0_A          224 VTEDNVMKIADFGLARDIHHIDYY-----KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP  298 (382)
T ss_dssp             ECTTCCEEECSCSCCCCSSCCCTT-----CCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             EcCCCcEEEcccCccccccccccc-----ccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999876543321     22344678899977 87  6778999999999999999999 999987532


Q ss_pred             ccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                      .                 .+.. ..+..........         .....+.+++..|++.+|++|||++||++.|+++.
T Consensus       299 ~-----------------~~~~-~~~~~~~~~~~~~---------~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~  351 (382)
T 3tt0_A          299 V-----------------EELF-KLLKEGHRMDKPS---------NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV  351 (382)
T ss_dssp             H-----------------HHHH-HHHHTTCCCCCCS---------SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             H-----------------HHHH-HHHHcCCCCCCCc---------cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            1                 1111 1111111111110         11123456778999999999999999999999998


Q ss_pred             HHhhcc
Q 046036          595 EVLLGV  600 (614)
Q Consensus       595 ~~~~~~  600 (614)
                      ......
T Consensus       352 ~~~~~~  357 (382)
T 3tt0_A          352 ALTSNQ  357 (382)
T ss_dssp             HHSCSC
T ss_pred             HHHhcC
Confidence            765444

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.86  E-value=2.4e-22  Score=205.06  Aligned_cols=206  Identities=18%  Similarity=0.135  Sum_probs=127.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC---------------------------CCceeeCCCCC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------------------PSNVLLDYDMT  444 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i---------------------------~~NILld~~~~  444 (614)
                      +....++|||||++|+|.+++...    ..+|..+.+++.++                           |+|||++.++.
T Consensus        83 ~~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~  158 (336)
T 3g2f_A           83 GRMEYLLVMEYYPNGSLXKYLSLH----TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGT  158 (336)
T ss_dssp             SCEEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSC
T ss_pred             CCceEEEEEecCCCCcHHHHHhhc----ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCc
Confidence            345678999999999999999754    24777776665543                           89999999999


Q ss_pred             eeecccccccccCCCCCCCC-CCCcCcccccccccccc-cc-c--------CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          445 AYVGDFGLARFLPTNVTNPM-KGQSNSAAVWGSIGYNM-EW-V--------ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~-~~~~~~~~~~gt~~y~a-E~-~--------~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +||+|||+++.+........ ..........||+.|+| |. .        ..++.++|||||||++|||+||+.|+...
T Consensus       159 ~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  238 (336)
T 3g2f_A          159 CVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPG  238 (336)
T ss_dssp             EEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTT
T ss_pred             EEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCc
Confidence            99999999987654321100 00112334679999977 87 2        35668899999999999999998876442


Q ss_pred             cccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          514 FADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       514 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                      .........+..........+.....+..... .+.....+. ........+.+++..|++.+|++|||+.||++.|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~l  316 (336)
T 3g2f_A          239 ESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQ-RPKFPEAWK-ENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAEL  316 (336)
T ss_dssp             SCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCC-CCCCCTTCC-CCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred             cchhHHHHhhhcccCCCchHHHHHhhhccccc-CCCCCcccc-cccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHH
Confidence            22111111111111111111222222211110 010000000 0012344566788899999999999999999999999


Q ss_pred             HHHhhccccc
Q 046036          594 KEVLLGVRIN  603 (614)
Q Consensus       594 ~~~~~~~~~~  603 (614)
                      ...+.+.+.+
T Consensus       317 l~~~~~~~~~  326 (336)
T 3g2f_A          317 MMIWERNKSV  326 (336)
T ss_dssp             HHCCCC----
T ss_pred             HHHHHhcccC
Confidence            9887776543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.86  E-value=4.1e-22  Score=202.31  Aligned_cols=173  Identities=18%  Similarity=0.305  Sum_probs=124.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.++++..  ...+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~  197 (325)
T 3kul_A          120 TRGRLAMIVTEYMENGSLDTFLRTH--DGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGL  197 (325)
T ss_dssp             CGGGCCEEEEECCTTCBHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSS
T ss_pred             EeCCccEEEeeCCCCCcHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCc
Confidence            3456789999999999999999753  2358999998888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++........    ........||+.|+| |.  ...++.++|||||||++|||++ |+.||.....             
T Consensus       198 a~~~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~-------------  260 (325)
T 3kul_A          198 SRVLEDDPDA----AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN-------------  260 (325)
T ss_dssp             CEECC----C----CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH-------------
T ss_pred             ccccccCccc----eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH-------------
Confidence            9877654321    112234567888977 87  5788999999999999999999 9999975321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                          .+...........+.+.          .....+.+++..|++.+|++|||+.||++.|+.+...
T Consensus       261 ----~~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~  314 (325)
T 3kul_A          261 ----RDVISSVEEGYRLPAPM----------GCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS  314 (325)
T ss_dssp             ----HHHHHHHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ----HHHHHHHHcCCCCCCCC----------CcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence                11111111111111111          1122345677899999999999999999999988754

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.86  E-value=3.9e-22  Score=205.55  Aligned_cols=173  Identities=20%  Similarity=0.255  Sum_probs=125.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCC-------------------------------------------------------
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEA-------------------------------------------------------  417 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~-------------------------------------------------------  417 (614)
                      ++..++|||||++|+|.++++....                                                       
T Consensus        99 ~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (359)
T 3vhe_A           99 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEE  178 (359)
T ss_dssp             TSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------------------------
T ss_pred             CCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhh
Confidence            4458999999999999999976431                                                       


Q ss_pred             --------CcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcc
Q 046036          418 --------TRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSA  471 (614)
Q Consensus       418 --------~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~  471 (614)
                              ...+++..+..++.++                  |+|||++.++.+||+|||+++........     ....
T Consensus       179 ~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~-----~~~~  253 (359)
T 3vhe_A          179 EEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY-----VRKG  253 (359)
T ss_dssp             -----CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTC-----EEC-
T ss_pred             cccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccc-----hhcc
Confidence                    1128888888888777                  99999999999999999999876543321     2334


Q ss_pred             cccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcC-C
Q 046036          472 AVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVD-K  546 (614)
Q Consensus       472 ~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~  546 (614)
                      ...||+.|+| |.  ...++.++|||||||+++||+| |+.||.......                 .+...+..... .
T Consensus       254 ~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-----------------~~~~~~~~~~~~~  316 (359)
T 3vhe_A          254 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-----------------EFCRRLKEGTRMR  316 (359)
T ss_dssp             -CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-----------------HHHHHHHHTCCCC
T ss_pred             ccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-----------------HHHHHHHcCCCCC
Confidence            5678999977 87  6788999999999999999999 999997532211                 11111111111 1


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          547 DAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                      .+..          ....+.+++..|++.+|++||||.||++.|+++.+..
T Consensus       317 ~~~~----------~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  357 (359)
T 3vhe_A          317 APDY----------TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  357 (359)
T ss_dssp             CCTT----------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCC----------CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence            1110          1123446777999999999999999999999887653

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.86  E-value=2.4e-22  Score=201.19  Aligned_cols=186  Identities=19%  Similarity=0.286  Sum_probs=122.9

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++|+|.+++...  ...+++..+.+++.++                  |+||+++.++.+||+|||+++.
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~  163 (295)
T 3ugc_A           86 RNLKLIMEYLPYGSLRDYLQKH--KERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV  163 (295)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHC--GGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-
T ss_pred             CceEEEEEeCCCCCHHHHHHhc--ccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCccccc
Confidence            3478999999999999999764  2358998888888777                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC-
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES-  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~-  531 (614)
                      .......    ........|++.|+| |.  ...++.++|||||||+++||+||..|+......   ............ 
T Consensus       164 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~---~~~~~~~~~~~~~  236 (295)
T 3ugc_A          164 LPQDKEF----FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGNDKQGQM  236 (295)
T ss_dssp             ----------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH---HHHHHCTTCCTHH
T ss_pred             ccCCcce----eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH---HHhhhcCccccch
Confidence            7544221    112233557788977 87  677899999999999999999999998643211   111111000000 


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                      ....+...+.........  .       .+...+.+++..|++.+|++|||+.|++++|+++++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~--~-------~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          237 IVFHLIELLKNNGRLPRP--D-------GCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             HHHHHHHHHHTTCCCCCC--T-------TCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHhccCcCCCC--c-------CcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            111122222222111111  0       11234556778999999999999999999999998754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=2e-21  Score=209.85  Aligned_cols=189  Identities=25%  Similarity=0.327  Sum_probs=160.3

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCc
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK  115 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  115 (614)
                      +|+.|+|++|+|++ +|..+  +   + +|++|+|++|+|+ .+|   ..+++|++|+|++|+|++ +|. +.+  +|+.
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~---~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~  124 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--P---P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH  124 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--C---T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE
T ss_pred             CccEEEeCCCCCCc-cCHhH--c---C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE
Confidence            89999999999996 77763  1   4 8999999999998 677   457899999999999996 776 665  7776


Q ss_pred             ccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCC
Q 046036          116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLS  195 (614)
Q Consensus       116 L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  195 (614)
                      |+            |++|+|++ +|.   .+++|++|+|++|+|++ +|.   .+++|+.|+|++|.|++ +|. |.  +
T Consensus       125 L~------------Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~  180 (571)
T 3cvr_A          125 LD------------VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--E  180 (571)
T ss_dssp             EE------------CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred             EE------------CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--C
Confidence            66            99999997 555   68999999999999995 665   67899999999999996 676 66  8


Q ss_pred             CCceeccCCccCCCCccccccCcccc-------hHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCC
Q 046036          196 NTQELDFSEHMLSDEIPITLGNRSKF-------EHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF  268 (614)
Q Consensus       196 ~L~~L~ls~N~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  268 (614)
                      +|+.|+|++|.|+ .+|. |..  +|       +.|+|++|.|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       181 ~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          181 SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            9999999999999 4555 654  77       99999999999 68888888999999999999999999988766543

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=197.91  Aligned_cols=182  Identities=19%  Similarity=0.255  Sum_probs=128.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...  ...++|..+..++.++                  |+||+++.++.+||+|||++
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  155 (310)
T 3s95_A           78 KDKRLNFITEYIKGGTLRGIIKSM--DSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLA  155 (310)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHC--CTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTC
T ss_pred             cCCeeEEEEEecCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccc
Confidence            356789999999999999999863  3358999999888887                  99999999999999999999


Q ss_pred             cccCCCCCCCC-------CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          454 RFLPTNVTNPM-------KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       454 ~~~~~~~~~~~-------~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      +..........       ..........||+.|+| |.  ...++.++|||||||++|||++|..|+..........   
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~---  232 (310)
T 3s95_A          156 RLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF---  232 (310)
T ss_dssp             EECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTS---
T ss_pred             eecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH---
Confidence            87654332100       00011124689999977 87  6678999999999999999999999987543321110   


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcc
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGV  600 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~  600 (614)
                           ........+.......                 ...+.+++..|++.+|++|||+.|+++.|+.++....+.
T Consensus       233 -----~~~~~~~~~~~~~~~~-----------------~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~~  287 (310)
T 3s95_A          233 -----GLNVRGFLDRYCPPNC-----------------PPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGH  287 (310)
T ss_dssp             -----SBCHHHHHHHTCCTTC-----------------CTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHHC
T ss_pred             -----hhhhhccccccCCCCC-----------------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccCc
Confidence                 0011111111111111                 112345777999999999999999999999999876554

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.85  E-value=6.6e-22  Score=198.17  Aligned_cols=184  Identities=14%  Similarity=0.130  Sum_probs=128.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC-----eeec
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT-----AYVG  448 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~-----~kl~  448 (614)
                      .+...++||||+ +|+|.+++...  ...+++..+.+++.++                  |+||+++.++.     +||+
T Consensus        77 ~~~~~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~  153 (298)
T 1csn_A           77 EGLHNVLVIDLL-GPSLEDLLDLC--GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVV  153 (298)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             CCceeEEEEEec-CCCHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEE
Confidence            456789999999 99999999854  2358999999988888                  99999988776     9999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++....................||+.|+| |.  ...++.++|||||||+++||+||+.||......... ..+  
T Consensus       154 Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~-~~~--  230 (298)
T 1csn_A          154 DFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNK-QKY--  230 (298)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHH-HHH--
T ss_pred             ECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccH-HHH--
Confidence            999998776543221111122345789999977 87  667899999999999999999999999764221110 000  


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                             ..+.........          ..........+.+++..|++.+|++||++.+|++.|+++.....
T Consensus       231 -------~~~~~~~~~~~~----------~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~  286 (298)
T 1csn_A          231 -------ERIGEKKQSTPL----------RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN  286 (298)
T ss_dssp             -------HHHHHHHHHSCH----------HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             -------HHHHhhccCccH----------HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence                   000000000000          00000112344567789999999999999999999999877654

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.85  E-value=4.8e-22  Score=203.61  Aligned_cols=182  Identities=14%  Similarity=0.202  Sum_probs=125.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC--Ceeeccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM--TAYVGDFGL  452 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~--~~kl~DfGl  452 (614)
                      +...++||||+ +|+|.+++...+   .+++..+.+++.++                  |+|||++.++  .+||+|||+
T Consensus       124 ~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~  199 (345)
T 2v62_A          124 RSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGL  199 (345)
T ss_dssp             CEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTT
T ss_pred             CcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCC
Confidence            56789999999 999999998542   68999999988887                  9999999887  999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.+..................||+.|+| |.  ...++.++|||||||++|||+||+.||............ ......
T Consensus       200 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~-~~~~~~  278 (345)
T 2v62_A          200 SYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQT-AKTNLL  278 (345)
T ss_dssp             CEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHH-HHHHHH
T ss_pred             ceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHH-HHHhhc
Confidence            98775432211111112245689999977 87  667899999999999999999999999653222111111 111110


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      ....+.+......                ......+.++...|++.+|++||++.+|++.|+++.-
T Consensus       279 ~~~~~~~~~~~~~----------------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          279 DELPQSVLKWAPS----------------GSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             HTTTHHHHHHSCT----------------TSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             ccccHHHHhhccc----------------cccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence            1111111111100                0112234567779999999999999999999987543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.85  E-value=1.4e-21  Score=195.57  Aligned_cols=184  Identities=15%  Similarity=0.152  Sum_probs=129.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee---CCCCCeeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL---DYDMTAYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl---d~~~~~kl~Df  450 (614)
                      .++..++||||+ +|+|.+++...  ...+++..+..++.++                  |+|||+   ++++.+||+||
T Consensus        76 ~~~~~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Df  152 (296)
T 4hgt_A           76 EGDYNVMVMELL-GPSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDF  152 (296)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCC
T ss_pred             CCCceEEEEEcc-CCCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecC
Confidence            456679999999 99999999743  2358999999888887                  999999   78899999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+++....................||+.|+| |.  ...++.++|||||||+++||+||+.||.........        
T Consensus       153 g~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--------  224 (296)
T 4hgt_A          153 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKR--------  224 (296)
T ss_dssp             TTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSS--------
T ss_pred             ccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhh--------
Confidence            9998776543321111122345789999977 87  667899999999999999999999999764322110        


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                        ..........+.....       .   ........+.+++..|++.+|++|||+.||++.|+++.....
T Consensus       225 --~~~~~~~~~~~~~~~~-------~---~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~  283 (296)
T 4hgt_A          225 --QKYERISEKKMSTPIE-------V---LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             --SHHHHHHHHHHHSCHH-------H---HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             --hhhhhhhcccccchhh-------h---hhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence              0011111111111000       0   000011245567789999999999999999999998877653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.85  E-value=1.5e-21  Score=198.77  Aligned_cols=189  Identities=19%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus       116 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  193 (333)
T 1mqb_A          116 SKYKPMMIITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGL  193 (333)
T ss_dssp             CSSSSEEEEEECCTTEEHHHHHHHT--TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             ecCCCcEEEEeCCCCCcHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCc
Confidence            3456789999999999999999753  2358898888888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++........    ........||+.|+| |.  ...++.++|||||||+++||+| |+.||.....             
T Consensus       194 ~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-------------  256 (333)
T 1mqb_A          194 SRVLEDDPEA----TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN-------------  256 (333)
T ss_dssp             ---------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-------------
T ss_pred             chhhcccccc----ccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH-------------
Confidence            9876543221    011223456888977 87  6788999999999999999999 9999965321             


Q ss_pred             CCChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcc----ccc
Q 046036          529 PESVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGV----RIN  603 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~----~~~  603 (614)
                          .+... .+..... +.+.          .....+.+++..|++.+|++||++.|+++.|+++.......    .+.
T Consensus       257 ----~~~~~-~~~~~~~~~~~~----------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~~~~~~~~~  321 (333)
T 1mqb_A          257 ----HEVMK-AINDGFRLPTPM----------DCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLKTLADFD  321 (333)
T ss_dssp             ----HHHHH-HHHTTCCCCCCT----------TCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGGGGSBCCC-
T ss_pred             ----HHHHH-HHHCCCcCCCcc----------cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchhhhhhcCCC
Confidence                11111 1111111 1111          11223456778999999999999999999999887654433    345


Q ss_pred             CccccccccC
Q 046036          604 GERRIRKNAT  613 (614)
Q Consensus       604 ~~~~~~~~~~  613 (614)
                      |..+.+.+.+
T Consensus       322 p~~~~~~p~~  331 (333)
T 1mqb_A          322 PRVSIRLPST  331 (333)
T ss_dssp             ----------
T ss_pred             ccchhhCCCC
Confidence            5555555544

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.85  E-value=1.4e-21  Score=199.34  Aligned_cols=180  Identities=19%  Similarity=0.264  Sum_probs=120.5

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------------CCceeeCCCCCeee
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------------PSNVLLDYDMTAYV  447 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------------~~NILld~~~~~kl  447 (614)
                      ...++||||+++|+|.++++..    .+++..+.+++.++                          |+|||++.++.+||
T Consensus       108 ~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl  183 (337)
T 3mdy_A          108 TQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCI  183 (337)
T ss_dssp             CEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEE
T ss_pred             CceEEEEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEE
Confidence            5679999999999999999743    47888777766543                          89999999999999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCc------cCceeehhHHHHHHHhCC----------C
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQH------KGKGYSCGILLLEIMTGK----------R  508 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~------k~DVySfGvvllElltG~----------~  508 (614)
                      +|||+++.........   ........||+.|+| |.  ....+.      ++|||||||++|||+||.          .
T Consensus       184 ~Dfg~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~  260 (337)
T 3mdy_A          184 ADLGLAVKFISDTNEV---DIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQL  260 (337)
T ss_dssp             CCCTTCEECC------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred             EeCCCceeeccccccc---cCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccc
Confidence            9999998765432210   011224679999977 87  333333      389999999999999994          4


Q ss_pred             CCCcccccCchHHHHHHhhCCCChHHHHHHHH-hcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHH
Q 046036          509 PTDEMFADCLSLHNFCEMALPESVMELVYSRL-LQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMV  587 (614)
Q Consensus       509 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~  587 (614)
                      ||........             ..+.....+ .....+....+..    ..++...+.+++..|++.+|++|||+.||+
T Consensus       261 p~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~li~~~l~~dP~~Rps~~ell  323 (337)
T 3mdy_A          261 PYHDLVPSDP-------------SYEDMREIVCIKKLRPSFPNRWS----SDECLRQMGKLMTECWAHNPASRLTALRVK  323 (337)
T ss_dssp             TTTTTSCSSC-------------CHHHHHHHHTTSCCCCCCCGGGG----GSHHHHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             cHhhhcCCCC-------------chhhhHHHHhhhccCccccccch----hhHHHHHHHHHHHHhhhhChhhCCCHHHHH
Confidence            4443221111             112222222 1111111111110    124555677888999999999999999999


Q ss_pred             HHHHHhHHHh
Q 046036          588 MEMNVIKEVL  597 (614)
Q Consensus       588 ~~L~~i~~~~  597 (614)
                      +.|+.+.+..
T Consensus       324 ~~L~~l~~~~  333 (337)
T 3mdy_A          324 KTLAKMSESQ  333 (337)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhhc
Confidence            9999987654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.85  E-value=7e-22  Score=200.81  Aligned_cols=168  Identities=23%  Similarity=0.315  Sum_probs=122.9

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++|+|.+++...  ...+++..+..++.++                  |+|||++.++.+||+|||+++.
T Consensus        89 ~~~~~v~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~  166 (327)
T 3poz_A           89 STVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             SSEEEEEECCTTCBHHHHHHHS--TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHH
T ss_pred             CCeEEEEEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeE
Confidence            3478999999999999999864  2358898888888777                  9999999999999999999998


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......     .......||++|+| |+  ...++.++|||||||++|||+| |+.||......  .+..         
T Consensus       167 ~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~---------  230 (327)
T 3poz_A          167 LGAEEKE-----YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISS---------  230 (327)
T ss_dssp             HTTTCC------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHH---------
T ss_pred             ccCCccc-----ccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHH---------
Confidence            7654321     22334567889977 87  6788999999999999999999 99999753221  1111         


Q ss_pred             hHHHHHHHHhcCc-CCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          532 VMELVYSRLLQGV-DKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       532 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                             .+.... ...+.          .+...+.+++..|++.+|++||+|+|+++.|+.+...
T Consensus       231 -------~~~~~~~~~~~~----------~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~  279 (327)
T 3poz_A          231 -------ILEKGERLPQPP----------ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             -------HHHTTCCCCCCT----------TBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred             -------HHHcCCCCCCCc----------cCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence                   111111 01111          1122355678899999999999999999999988643

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.85  E-value=1.6e-21  Score=195.35  Aligned_cols=161  Identities=17%  Similarity=0.230  Sum_probs=117.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...    .+++.....++.++                  |+|||++.++.+||+|||++
T Consensus        88 ~~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~  163 (297)
T 3fxz_A           88 VGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFC  163 (297)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             ECCEEEEEEECCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCc
Confidence            356789999999999999999753    47888888887777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.......       ......||+.|+| |.  ...++.++|||||||++|||+||+.||......              
T Consensus       164 ~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--------------  222 (297)
T 3fxz_A          164 AQITPEQS-------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL--------------  222 (297)
T ss_dssp             EECCSTTC-------CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--------------
T ss_pred             eecCCccc-------ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--------------
Confidence            87655432       2345689999977 87  677899999999999999999999999753211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         +.......... +........       ...+.++...|++.+|++|||++|+++
T Consensus       223 ---~~~~~~~~~~~-~~~~~~~~~-------~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          223 ---RALYLIATNGT-PELQNPEKL-------SAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             ---HHHHHHHHHCS-CCCSCGGGS-------CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ---HHHHHHHhCCC-CCCCCcccc-------CHHHHHHHHHHccCChhHCcCHHHHhh
Confidence               11111111110 000011111       122345677999999999999999985

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.85  E-value=1.9e-21  Score=194.61  Aligned_cols=183  Identities=15%  Similarity=0.146  Sum_probs=128.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee---CCCCCeeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL---DYDMTAYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl---d~~~~~kl~Df  450 (614)
                      .++..++||||+ +|+|.+++...  ...+++..+..++.++                  |+||++   +.++.+||+||
T Consensus        76 ~~~~~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Df  152 (296)
T 3uzp_A           76 EGDYNVMVMELL-GPSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDF  152 (296)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred             CCCceEEEEEec-CCCHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeC
Confidence            355679999999 89999999743  2358999998888887                  999999   48899999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCc-hHHHHHHh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL-SLHNFCEM  526 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~-~l~~~~~~  526 (614)
                      |+++....................||+.|+| |.  ...++.++|||||||+++||+||+.||........ ..      
T Consensus       153 g~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~------  226 (296)
T 3uzp_A          153 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK------  226 (296)
T ss_dssp             TTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH------
T ss_pred             CCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhh------
Confidence            9998776543321111112345689999977 87  66789999999999999999999999976432111 10      


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                           ...+....+.....       .   ........+.+++..|++.+|++|||+.||++.|+++.....
T Consensus       227 -----~~~~~~~~~~~~~~-------~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~  283 (296)
T 3uzp_A          227 -----YERISEKKMSTPIE-------V---LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             -----HHHHHHHHHHSCHH-------H---HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             -----hhhhcccccCCchH-------H---HHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence                 11111111111000       0   000111234567789999999999999999999998876654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.84  E-value=1.4e-21  Score=200.17  Aligned_cols=176  Identities=20%  Similarity=0.202  Sum_probs=125.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC--------------------CcccCHHHHHHHHhhC-----------------
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA--------------------TRRLDLAEGLKIAVDI-----------------  433 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~--------------------~~~l~~~~~~~ia~~i-----------------  433 (614)
                      ..++..++||||+++|+|.+++.....                    ...++|..+..++.++                 
T Consensus       119 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Di  198 (344)
T 1rjb_A          119 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  198 (344)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             eeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            345678999999999999999976432                    1347898888888887                 


Q ss_pred             -CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCC
Q 046036          434 -PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKR  508 (614)
Q Consensus       434 -~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~  508 (614)
                       |+||+++.++.+||+|||+++........     .......||+.|+| |.  ...++.++|||||||+++||+| |+.
T Consensus       199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~  273 (344)
T 1rjb_A          199 AARNVLVTHGKVVKICDFGLARDIMSDSNY-----VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVN  273 (344)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTS-----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred             ChhhEEEcCCCcEEeCCCccCcccccCccc-----eeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCC
Confidence             99999999999999999999876544321     22334678889977 86  6778999999999999999998 999


Q ss_pred             CCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          509 PTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       509 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ||......                 +.+...+..........         .....+.+++..|++.+|++|||+.|+++
T Consensus       274 p~~~~~~~-----------------~~~~~~~~~~~~~~~~~---------~~~~~l~~li~~~l~~dp~~Rps~~~l~~  327 (344)
T 1rjb_A          274 PYPGIPVD-----------------ANFYKLIQNGFKMDQPF---------YATEEIYIIMQSCWAFDSRKRPSFPNLTS  327 (344)
T ss_dssp             SSTTCCCS-----------------HHHHHHHHTTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CcccCCcH-----------------HHHHHHHhcCCCCCCCC---------CCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            99753221                 11111121111111000         01123445777999999999999999999


Q ss_pred             HHHHhHHHh
Q 046036          589 EMNVIKEVL  597 (614)
Q Consensus       589 ~L~~i~~~~  597 (614)
                      .|+.+....
T Consensus       328 ~l~~~~~~~  336 (344)
T 1rjb_A          328 FLGCQLADA  336 (344)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHHHHH
Confidence            998876543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.84  E-value=8e-22  Score=203.58  Aligned_cols=175  Identities=22%  Similarity=0.275  Sum_probs=126.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC----CCcccCHHHHHHHHhhC------------------CCceeeCCCC---Ce
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE----ATRRLDLAEGLKIAVDI------------------PSNVLLDYDM---TA  445 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~----~~~~l~~~~~~~ia~~i------------------~~NILld~~~---~~  445 (614)
                      ..++..++|||||++|+|.+++....    ....++|..+..++.++                  |+|||++.++   .+
T Consensus       144 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~  223 (367)
T 3l9p_A          144 LQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVA  223 (367)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCE
T ss_pred             ecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceE
Confidence            34566799999999999999997532    22458999888888877                  9999999554   59


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHH
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLH  521 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~  521 (614)
                      ||+|||+++........     .......||+.|+| |.  ...++.++|||||||+++||+| |+.||.....      
T Consensus       224 kL~DFG~a~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~------  292 (367)
T 3l9p_A          224 KIGDFGMARDIYRAGYY-----RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN------  292 (367)
T ss_dssp             EECCCHHHHHHHHHSSC-----TTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH------
T ss_pred             EECCCcccccccccccc-----ccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH------
Confidence            99999999865432211     22334678999977 87  6788999999999999999998 9999975321      


Q ss_pred             HHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          522 NFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                                 .+......... ...+..         .+...+.+++..|++.+|++|||+.||++.|+.+.+..
T Consensus       293 -----------~~~~~~i~~~~-~~~~~~---------~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          293 -----------QEVLEFVTSGG-RMDPPK---------NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             -----------HHHHHHHHTTC-CCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             -----------HHHHHHHHcCC-CCCCCc---------cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence                       11111111111 111111         11123456778999999999999999999999887654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.84  E-value=1.5e-21  Score=192.58  Aligned_cols=171  Identities=23%  Similarity=0.300  Sum_probs=125.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        75 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~  152 (269)
T 4hcu_A           75 LEQAPICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGM  152 (269)
T ss_dssp             CSSSSEEEEEECCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTG
T ss_pred             ecCCceEEEEEeCCCCcHHHHHHhc--CcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccc
Confidence            3456789999999999999999754  2358888888887776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......||+.|+| |.  ...++.++||||+||+++||+| |+.||.....             
T Consensus       153 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~-------------  213 (269)
T 4hcu_A          153 TRFVLDDQY------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-------------  213 (269)
T ss_dssp             GGGBCCHHH------HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-------------
T ss_pred             ccccccccc------ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH-------------
Confidence            987654321      12334567888977 87  5788999999999999999999 9999975321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                          .+.............+..   .       ...+.++...|++.+|++|||+.|+++.|+++.+.
T Consensus       214 ----~~~~~~~~~~~~~~~~~~---~-------~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          214 ----SEVVEDISTGFRLYKPRL---A-------STHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             ----HHHHHHHHTTCCCCCCTT---S-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHhcCccCCCCCc---C-------CHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence                111111111111111110   1       12344677799999999999999999999998764

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.84  E-value=1.2e-21  Score=199.04  Aligned_cols=170  Identities=21%  Similarity=0.265  Sum_probs=121.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++...  ...+++..+..++.++                  |+|||++.++.+||+|||+++
T Consensus        86 ~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  163 (325)
T 3kex_A           86 GSSLQLVTQYLPLGSLLDHVRQH--RGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVAD  163 (325)
T ss_dssp             BSSEEEEEECCTTCBSHHHHHSS--GGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGG
T ss_pred             CCccEEEEEeCCCCCHHHHHHHc--cccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCccc
Confidence            45688999999999999999764  2357888887777766                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........     .......||++|+| |.  ...++.++|||||||++|||+| |+.||......  .+....      
T Consensus       164 ~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~------  230 (325)
T 3kex_A          164 LLPPDDKQ-----LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLL------  230 (325)
T ss_dssp             GSCCCTTC-----CC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHHH------
T ss_pred             ccCccccc-----ccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHHH------
Confidence            87654321     22345678889977 87  6789999999999999999999 99999753211  111111      


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                               ........+..          +...+.+++..|++.+|++|||+.|+++.|+.+...
T Consensus       231 ---------~~~~~~~~~~~----------~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~  277 (325)
T 3kex_A          231 ---------EKGERLAQPQI----------CTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD  277 (325)
T ss_dssp             ---------HTTCBCCCCTT----------BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred             ---------HcCCCCCCCCc----------CcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence                     11110001100          011234567799999999999999999999988643

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.84  E-value=9.5e-22  Score=197.95  Aligned_cols=171  Identities=23%  Similarity=0.285  Sum_probs=115.4

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC---------------------CCceeeCCCCC-eeecccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------------PSNVLLDYDMT-AYVGDFG  451 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i---------------------~~NILld~~~~-~kl~DfG  451 (614)
                      +..++||||+++|+|.++++.......+++..+.+++.++                     |+||+++.++. +||+|||
T Consensus        72 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg  151 (307)
T 2eva_A           72 NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFG  151 (307)
T ss_dssp             TTTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCC
T ss_pred             CCcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccc
Confidence            3478999999999999999865433456777666655443                     89999998876 7999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++.....          .....||+.|+| |.  ...++.++|||||||+++||+||+.||........          
T Consensus       152 ~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~----------  211 (307)
T 2eva_A          152 TACDIQTH----------MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAF----------  211 (307)
T ss_dssp             C----------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHH----------
T ss_pred             cccccccc----------cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHH----------
Confidence            99765432          223569999977 87  66789999999999999999999999975322111          


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                           +.............+   ..       ....+.+++..|++.+|++|||+.|+++.|+.+.+....
T Consensus       212 -----~~~~~~~~~~~~~~~---~~-------~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~  267 (307)
T 2eva_A          212 -----RIMWAVHNGTRPPLI---KN-------LPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG  267 (307)
T ss_dssp             -----HHHHHHHTTCCCCCB---TT-------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred             -----HHHHHHhcCCCCCcc---cc-------cCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence                 111111111110000   01       112344677799999999999999999999998776543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.84  E-value=6.2e-22  Score=210.41  Aligned_cols=169  Identities=24%  Similarity=0.327  Sum_probs=123.2

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++|||||++|+|.++++... ...+++..+.+++.++                  |+|||++.++.+||+|||+++
T Consensus       254 ~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~  332 (454)
T 1qcf_A          254 KEPIYIITEFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLAR  332 (454)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHSHH-HHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGG
T ss_pred             CCccEEEEeecCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCce
Confidence            456799999999999999997532 2357888888877776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......      .......+++.|+| |.  ...++.++|||||||++|||+| |+.||.....               
T Consensus       333 ~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~---------------  391 (454)
T 1qcf_A          333 VIEDNEY------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN---------------  391 (454)
T ss_dssp             GBCCHHH------HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH---------------
T ss_pred             EcCCCce------eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH---------------
Confidence            7653211      11233456788977 87  6789999999999999999999 9999975321               


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                        .+.......+...+.|.          .+...+.+++..||+.+|++||||.+|++.|+.+..
T Consensus       392 --~~~~~~i~~~~~~~~~~----------~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~  444 (454)
T 1qcf_A          392 --PEVIRALERGYRMPRPE----------NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYT  444 (454)
T ss_dssp             --HHHHHHHHHTCCCCCCT----------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred             --HHHHHHHHcCCCCCCCC----------CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence              11111111111111111          112345567789999999999999999999987643

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.84  E-value=1.6e-21  Score=201.48  Aligned_cols=178  Identities=20%  Similarity=0.316  Sum_probs=116.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...  ...+++..+..++.++                  |+|||+++++.+||+|||++
T Consensus       162 ~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a  239 (373)
T 3c1x_A          162 SEGSPLVVLPYMKHGDLRNFIRNE--THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLA  239 (373)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---
T ss_pred             CCCCeEEEEECCCCCCHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccc
Confidence            345679999999999999999754  3357888888777766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........   .........||+.|+| |.  ...++.++|||||||++|||+| |..||......  ......     
T Consensus       240 ~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~--~~~~~~-----  309 (373)
T 3c1x_A          240 RDMYDKEFD---SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYL-----  309 (373)
T ss_dssp             ---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS--CHHHHH-----
T ss_pred             ccccccccc---cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH--HHHHHH-----
Confidence            876543211   0112234567889977 87  6788999999999999999999 66677643211  111111     


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhccc
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVR  601 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~~  601 (614)
                                ........+.          .+...+.+++..||+.+|++|||+.|+++.|+.+...+.+..
T Consensus       310 ----------~~~~~~~~p~----------~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~~  361 (373)
T 3c1x_A          310 ----------LQGRRLLQPE----------YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEH  361 (373)
T ss_dssp             ----------HTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSCC
T ss_pred             ----------HcCCCCCCCC----------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccccc
Confidence                      1111101111          011234467779999999999999999999999987766543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.84  E-value=1.6e-21  Score=206.81  Aligned_cols=166  Identities=24%  Similarity=0.299  Sum_probs=121.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++|||||++|+|.+++...+ ...+++..+..++.++                  |+|||++.++.+||+|||+++
T Consensus       259 ~~~~~iv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  337 (450)
T 1k9a_A          259 KGGLYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK  337 (450)
T ss_dssp             TSCEEEEEECCTTCBHHHHHHHHC-TTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CCceEEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcc
Confidence            346899999999999999998542 2347888888887777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .....          .....+++.|+| |.  ...++.++|||||||++|||+| |+.||.......  .          
T Consensus       338 ~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~----------  395 (450)
T 1k9a_A          338 EASST----------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--V----------  395 (450)
T ss_dssp             ECC----------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--H----------
T ss_pred             ccccc----------ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--H----------
Confidence            54322          122367888977 87  6789999999999999999999 999997532211  1          


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                           .. .+..........         .+...+.+++..||+.+|++|||+.|+++.|+.++..
T Consensus       396 -----~~-~i~~~~~~~~p~---------~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          396 -----VP-RVEKGYKMDAPD---------GCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             -----HH-HHHTTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             -----HH-HHHcCCCCCCCC---------cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence                 11 111111111100         1122344677799999999999999999999998765

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.84  E-value=5.3e-21  Score=193.69  Aligned_cols=161  Identities=19%  Similarity=0.248  Sum_probs=117.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...    .++|..+..++.++                  |+||+++.++.+||+|||++
T Consensus       113 ~~~~~~lv~e~~~~~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~  188 (321)
T 2c30_A          113 VGEELWVLMEFLQGGALTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFC  188 (321)
T ss_dssp             ETTEEEEEECCCCSCBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             ECCEEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeee
Confidence            356789999999999999998743    48999999888877                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.......       ......||+.|+| |+  ...++.++|||||||+++||+||+.||......  ..          
T Consensus       189 ~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~--~~----------  249 (321)
T 2c30_A          189 AQISKDVP-------KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV--QA----------  249 (321)
T ss_dssp             EECCSSSC-------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HH----------
T ss_pred             eecccCcc-------ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HH----------
Confidence            87654321       2344689999977 87  667899999999999999999999999753211  11          


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .. .+.....+........       ...+.++...|++.+|++|||+.|+++
T Consensus       250 -----~~-~~~~~~~~~~~~~~~~-------~~~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          250 -----MK-RLRDSPPPKLKNSHKV-------SPVLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             -----HH-HHHHSSCCCCTTGGGS-------CHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             -----HH-HHhcCCCCCcCccccC-------CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                 11 1111111111111111       112345667999999999999999986

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.84  E-value=1.9e-21  Score=191.63  Aligned_cols=171  Identities=21%  Similarity=0.323  Sum_probs=124.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~  150 (268)
T 3sxs_A           73 SKEYPIYIVTEYISNGCLLNYLRSH--GKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGM  150 (268)
T ss_dssp             CSSSSEEEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTC
T ss_pred             ccCCceEEEEEccCCCcHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCcc
Confidence            4456789999999999999999753  3358999988888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......||+.|+| |.  ...++.++||||+|++++||+| |+.||+.....            
T Consensus       151 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~------------  212 (268)
T 3sxs_A          151 TRYVLDDQY------VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS------------  212 (268)
T ss_dssp             EEECCTTCE------EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH------------
T ss_pred             ceecchhhh------hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH------------
Confidence            987654321      12233556778977 77  5678899999999999999999 99999753211            


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                           +.............+..   .       ...+.++...|++.+|++|||+.|+++.|+.+++.
T Consensus       213 -----~~~~~~~~~~~~~~~~~---~-------~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          213 -----EVVLKVSQGHRLYRPHL---A-------SDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             -----HHHHHHHTTCCCCCCTT---S-------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             -----HHHHHHHcCCCCCCCCc---C-------hHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence                 11111111111111111   0       11344677899999999999999999999988654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.84  E-value=6e-22  Score=197.61  Aligned_cols=174  Identities=22%  Similarity=0.314  Sum_probs=113.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.++++..  ...+++..+.+++.++                  |+||+++.++.+||+|||++
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~  167 (289)
T 3og7_A           90 TAPQLAIVTQWCEGSSLYHHLHAS--ETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLA  167 (289)
T ss_dssp             CSSSCEEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC--
T ss_pred             cCCccEEEEEecCCCcHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceec
Confidence            345678999999999999999754  3458998888888877                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +........     .......||+.|+| |.     ...++.++|||||||+++||++|+.||....... .+...+   
T Consensus       168 ~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~---  238 (289)
T 3og7_A          168 TEKSRWSGS-----HQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIEMV---  238 (289)
T ss_dssp             ---------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH-HHHHHH---
T ss_pred             ccccccccc-----ccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH-HHHHHh---
Confidence            866532211     22344679999977 76     3467889999999999999999999997532211 111111   


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                                  .............      ..+...+.+++..|++.+|++|||+.|++++|+++.
T Consensus       239 ------------~~~~~~~~~~~~~------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          239 ------------GRGSLSPDLSKVR------SNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA  287 (289)
T ss_dssp             ------------HHTSCCCCTTSSC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             ------------cccccCcchhhcc------ccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence                        1111111110000      011234556778999999999999999999998875

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.84  E-value=1e-21  Score=200.99  Aligned_cols=176  Identities=23%  Similarity=0.269  Sum_probs=125.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC---------------------CcccCHHHHHHHHhhC----------------
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA---------------------TRRLDLAEGLKIAVDI----------------  433 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~---------------------~~~l~~~~~~~ia~~i----------------  433 (614)
                      ..++..++||||+++|+|.+++.....                     ...+++..+..++.++                
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~D  199 (343)
T 1luf_A          120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD  199 (343)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            345678999999999999999975321                     2468999998888887                


Q ss_pred             --CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CC
Q 046036          434 --PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GK  507 (614)
Q Consensus       434 --~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~  507 (614)
                        |+||+++.++.+||+|||+++........     .......||+.|+| |.  ...++.++|||||||++|||+| |+
T Consensus       200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~  274 (343)
T 1luf_A          200 LATRNCLVGENMVVKIADFGLSRNIYSADYY-----KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGL  274 (343)
T ss_dssp             CSGGGEEECGGGCEEECCCSCHHHHTGGGCB-----C----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCcceEEECCCCeEEEeecCCCcccccCccc-----cccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCC
Confidence              99999999999999999999876433211     12334678999977 87  6678999999999999999999 99


Q ss_pred             CCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHH
Q 046036          508 RPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMV  587 (614)
Q Consensus       508 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~  587 (614)
                      .||.....                 .+.............+.          .....+.+++..|++.+|++||++.||+
T Consensus       275 ~p~~~~~~-----------------~~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~~p~~Rps~~~~~  327 (343)
T 1luf_A          275 QPYYGMAH-----------------EEVIYYVRDGNILACPE----------NCPLELYNLMRLCWSKLPADRPSFCSIH  327 (343)
T ss_dssp             CTTTTSCH-----------------HHHHHHHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CcCCCCCh-----------------HHHHHHHhCCCcCCCCC----------CCCHHHHHHHHHHcccCcccCCCHHHHH
Confidence            99975321                 11111111111111111          1112345677899999999999999999


Q ss_pred             HHHHHhHHHhh
Q 046036          588 MEMNVIKEVLL  598 (614)
Q Consensus       588 ~~L~~i~~~~~  598 (614)
                      +.|+++.+...
T Consensus       328 ~~L~~~~~~~~  338 (343)
T 1luf_A          328 RILQRMCERAE  338 (343)
T ss_dssp             HHHHHTTC---
T ss_pred             HHHHHHHhhhh
Confidence            99998876543

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.84  E-value=2.4e-21  Score=195.51  Aligned_cols=176  Identities=19%  Similarity=0.242  Sum_probs=127.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC---------------CcccCHHHHHHHHhhC------------------CCce
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA---------------TRRLDLAEGLKIAVDI------------------PSNV  437 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~---------------~~~l~~~~~~~ia~~i------------------~~NI  437 (614)
                      ..++..++||||+++|+|.+++.....               ...+++..+.+++.++                  |+||
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Ni  176 (313)
T 1t46_A           97 TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI  176 (313)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceE
Confidence            345678999999999999999975431               1248999998888877                  9999


Q ss_pred             eeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcc
Q 046036          438 LLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEM  513 (614)
Q Consensus       438 Lld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~  513 (614)
                      +++.++.+||+|||+++........     .......||+.|+| |.  ...++.++|||||||+++||+| |+.||...
T Consensus       177 l~~~~~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  251 (313)
T 1t46_A          177 LLTHGRITKICDFGLARDIKNDSNY-----VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM  251 (313)
T ss_dssp             EEETTTEEEECCCGGGSCTTSCTTS-----EECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             EEcCCCCEEEccccccccccccccc-----eeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence            9999999999999999877654321     12334567889977 86  6788999999999999999999 99998753


Q ss_pred             cccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          514 FADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       514 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                      .... ..            ...+.    .........         .....+.+++..|++.+|++|||+.|+++.|+++
T Consensus       252 ~~~~-~~------------~~~~~----~~~~~~~~~---------~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  305 (313)
T 1t46_A          252 PVDS-KF------------YKMIK----EGFRMLSPE---------HAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ  305 (313)
T ss_dssp             CSSH-HH------------HHHHH----HTCCCCCCT---------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             cchh-HH------------HHHhc----cCCCCCCcc---------cCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence            2211 11            11111    111110000         1112344677799999999999999999999987


Q ss_pred             HHHh
Q 046036          594 KEVL  597 (614)
Q Consensus       594 ~~~~  597 (614)
                      ....
T Consensus       306 ~~~~  309 (313)
T 1t46_A          306 ISES  309 (313)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6643

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.84  E-value=1e-21  Score=210.75  Aligned_cols=171  Identities=20%  Similarity=0.266  Sum_probs=125.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.+++.... ...+++..+..++.++                  |+|||++.++.+||+|||
T Consensus       285 ~~~~~~~~lv~E~~~~g~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG  363 (495)
T 1opk_A          285 CTREPPFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFG  363 (495)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHSC-TTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTT
T ss_pred             EecCCcEEEEEEccCCCCHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecc
Confidence            345667899999999999999997542 3458899888887777                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +++.......      .......+++.|+| |.  ...++.++|||||||++|||+| |+.||......  .+..     
T Consensus       364 ~a~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~-----  430 (495)
T 1opk_A          364 LSRLMTGDTY------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYE-----  430 (495)
T ss_dssp             CEECCTTCCE------ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHH-----
T ss_pred             cceeccCCce------eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHH-----
Confidence            9987654321      12233556788977 87  6778999999999999999999 99999753221  1111     


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                                 .+..........         .+...+.+++..||+.+|++||||.||++.|+.+.
T Consensus       431 -----------~~~~~~~~~~~~---------~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~  477 (495)
T 1opk_A          431 -----------LLEKDYRMERPE---------GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF  477 (495)
T ss_dssp             -----------HHHTTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             -----------HHHcCCCCCCCC---------CCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence                       111111110000         11223456778999999999999999999998763

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.84  E-value=3.5e-21  Score=191.83  Aligned_cols=184  Identities=16%  Similarity=0.175  Sum_probs=134.2

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus        81 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~  158 (287)
T 1u59_A           81 AEALMLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSK  158 (287)
T ss_dssp             SSSEEEEEECCTTEEHHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHhC--CccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECccccee
Confidence            45579999999999999999753  3358899988888887                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........    ........||+.|+| |.  ...++.++|||||||+++||+| |+.||......  .+          
T Consensus       159 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~----------  222 (287)
T 1u59_A          159 ALGADDSY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EV----------  222 (287)
T ss_dssp             ECTTCSCE----ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HH----------
T ss_pred             eeccCcce----eeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HH----------
Confidence            77543221    112233567899977 87  5678999999999999999999 99999753211  11          


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcccccCccccc
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVRINGERRIR  609 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~~~~~~~~~~  609 (614)
                           ............+.          .....+.++...|++.+|++||++.|+++.|+.+........-.+..+|+
T Consensus       223 -----~~~i~~~~~~~~~~----------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~~~~~~~  286 (287)
T 1u59_A          223 -----MAFIEQGKRMECPP----------ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGHHHHHH  286 (287)
T ss_dssp             -----HHHHHTTCCCCCCT----------TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCSSCCCTTC
T ss_pred             -----HHHHhcCCcCCCCC----------CcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcccCCccccC
Confidence                 11111111001111          11123446778999999999999999999999998887777666666554

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.84  E-value=2.8e-21  Score=201.74  Aligned_cols=167  Identities=16%  Similarity=0.194  Sum_probs=112.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC---CCCeeecccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY---DMTAYVGDFG  451 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~---~~~~kl~DfG  451 (614)
                      ++..++|||||++|+|.+++.... ...+++..+..|+.++                  |+|||++.   ++.+||+|||
T Consensus       131 ~~~~~lv~E~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG  209 (400)
T 1nxk_A          131 RKCLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFG  209 (400)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred             CcEEEEEEEeCCCCcHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecc
Confidence            566899999999999999998642 3468999998888877                  99999998   7899999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++......        .....+||+.|+| |+  ...++.++|||||||++|||+||+.||.........         
T Consensus       210 ~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~---------  272 (400)
T 1nxk_A          210 FAKETTSHN--------SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS---------  272 (400)
T ss_dssp             TCEECC-------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSC---------
T ss_pred             cccccCCCC--------ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcccccc---------
Confidence            998765332        2345789999977 87  678899999999999999999999999754321110         


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       .....   ....+...........       .-..+.++...|++.+|++|||+.|+++
T Consensus       273 -~~~~~---~i~~~~~~~~~~~~~~-------~s~~~~~li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          273 -PGMKT---RIRMGQYEFPNPEWSE-------VSEEVKMLIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             -CSHHH---HHHHTCCCCCTTTTTT-------SCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -HHHHH---HHHcCcccCCCccccc-------CCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence             00000   1111111110000011       1123446777999999999999999986

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.84  E-value=3.5e-21  Score=196.28  Aligned_cols=178  Identities=18%  Similarity=0.249  Sum_probs=127.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ..++..++||||+++|+|.+++.....             ...++|..+.+++.++                  |+||++
T Consensus       111 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll  190 (334)
T 2pvf_A          111 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLV  190 (334)
T ss_dssp             CSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             ccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEE
Confidence            446678999999999999999976431             2348898888888877                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~  515 (614)
                      +.++.+||+|||+++........     .......||+.|+| |.  ...++.++|||||||++|||+| |+.||.....
T Consensus       191 ~~~~~~kL~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  265 (334)
T 2pvf_A          191 TENNVMKIADFGLARDINNIDYY-----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV  265 (334)
T ss_dssp             CTTCCEEECCCTTCEECTTTSSE-----ECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH
T ss_pred             cCCCCEEEccccccccccccccc-----cccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH
Confidence            99999999999999876543211     12334567889977 86  6678999999999999999999 9999875321


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      .                 +.............+.          .....+.+++..|++.+|++|||+.|+++.|+.+..
T Consensus       266 ~-----------------~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~  318 (334)
T 2pvf_A          266 E-----------------ELFKLLKEGHRMDKPA----------NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT  318 (334)
T ss_dssp             H-----------------HHHHHHHHTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             H-----------------HHHHHHhcCCCCCCCc----------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            1                 1111111111111110          111234467779999999999999999999999987


Q ss_pred             Hhhcc
Q 046036          596 VLLGV  600 (614)
Q Consensus       596 ~~~~~  600 (614)
                      .....
T Consensus       319 ~~~~~  323 (334)
T 2pvf_A          319 LTTNE  323 (334)
T ss_dssp             HHC--
T ss_pred             ccccC
Confidence            65443

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.84  E-value=1.7e-21  Score=197.15  Aligned_cols=186  Identities=20%  Similarity=0.262  Sum_probs=128.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+++|+|.+++...    .+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus       107 ~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  182 (318)
T 3lxp_A          107 AASLQLVMEYVPLGSLRDYLPRH----SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAK  182 (318)
T ss_dssp             TTEEEEEECCCTTCBHHHHGGGS----CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             CceEEEEEecccCCcHHHHHhhC----CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccc
Confidence            45679999999999999999753    38888888888877                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ........    ........||+.|+| |.  ...++.++||||+||+++||+||+.||.........     .......
T Consensus       183 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~-----~~~~~~~  253 (318)
T 3lxp_A          183 AVPEGHEY----YRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLE-----LIGIAQG  253 (318)
T ss_dssp             ECCTTCSE----EEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHH-----HHCSCCH
T ss_pred             cccccccc----cccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhh-----hhccccc
Confidence            77543211    112234568888977 87  567889999999999999999999998653211000     0011111


Q ss_pred             --hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcc
Q 046036          532 --VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGV  600 (614)
Q Consensus       532 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~  600 (614)
                        ....+...+.........  .       .....+.+++..|++.+|++|||+.|+++.|+.+.+.+...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~--~-------~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~  315 (318)
T 3lxp_A          254 QMTVLRLTELLERGERLPRP--D-------KCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ  315 (318)
T ss_dssp             HHHHHHHHHHHHTTCCCCCC--T-------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred             chhHHHHHHHHhcccCCCCC--c-------cccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence              011122222222111110  0       11234556777999999999999999999999999887654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=177.46  Aligned_cols=132  Identities=15%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             ccEEEccCCcccccCC-CCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           65 LRILDAGGNQFAGDIP-AGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        65 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +++|+|++|+|++..| ..|..+++|++|+|++|++++..+..|.++++|++|+            |++|+|++..+..|
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~------------Ls~N~l~~~~~~~~  101 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL------------LTSNRLENVQHKMF  101 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE------------CCSSCCCCCCGGGG
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE------------CCCCccCccCHhHh
Confidence            3444444444443322 2244444444444444444444444444444444444            45555544444445


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCC
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS  208 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  208 (614)
                      ..+++|++|+|++|+|++..|..+..+++|++|+|++|.|++..|..|..+++|+.|+|++|.+.
T Consensus       102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55555555555555555444455555555555555555555444555555555555555555554

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.84  E-value=3.9e-21  Score=211.31  Aligned_cols=173  Identities=17%  Similarity=0.207  Sum_probs=122.7

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++|||||++|+|.+++...  ...+++..+..|+.++                  |+|||++.++.+||+|||+++.
T Consensus       408 ~~~~lv~E~~~~g~L~~~l~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~  485 (613)
T 2ozo_A          408 EALMLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKA  485 (613)
T ss_dssp             SSEEEEEECCTTCBHHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTT
T ss_pred             CCeEEEEEeCCCCcHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCccc
Confidence            5689999999999999999754  3468999999888887                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......    ........+++.|+| |+  ...++.++|||||||++|||+| |+.||......               
T Consensus       486 ~~~~~~~----~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~---------------  546 (613)
T 2ozo_A          486 LGADDSY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP---------------  546 (613)
T ss_dssp             CC------------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH---------------
T ss_pred             ccCCCce----eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH---------------
Confidence            7543221    111223456788977 87  6789999999999999999998 99999753221               


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                        ++......+.....+.          .+...+.+++..||+.+|++||++.+|++.|+.+......
T Consensus       547 --~~~~~i~~~~~~~~p~----------~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~  602 (613)
T 2ozo_A          547 --EVMAFIEQGKRMECPP----------ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS  602 (613)
T ss_dssp             --HHHHHHHTTCCCCCCT----------TCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred             --HHHHHHHcCCCCCCCC----------cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence              1111111111001111          1123455678899999999999999999999988766533

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.84  E-value=2.6e-21  Score=198.79  Aligned_cols=188  Identities=12%  Similarity=0.061  Sum_probs=129.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC--Ceeeccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM--TAYVGDFGL  452 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~--~~kl~DfGl  452 (614)
                      ++..++||||+ +|+|.+++.... ...+++..+..|+.++                  |+|||++.++  .+||+|||+
T Consensus       130 ~~~~~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~  207 (352)
T 2jii_A          130 DKYRFLVLPSL-GRSLQSALDVSP-KHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGF  207 (352)
T ss_dssp             TTEEEEEEECC-CEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTEEEEEEECCGGG
T ss_pred             CcEEEEEecCC-CcCHHHHHHhCC-cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCCCceEEEecCcc
Confidence            56789999999 999999998542 3569999999998888                  9999999998  899999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.+..................||+.|+| |.  ...++.++|||||||++|||+||+.||.........+.....    
T Consensus       208 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~----  283 (352)
T 2jii_A          208 AFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQ----  283 (352)
T ss_dssp             CBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHH----
T ss_pred             eeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHH----
Confidence            98775433211111112244689999977 87  567899999999999999999999999764322111111110    


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                              ....... ..+......    ......+.+++..|++.+|++|||+.||++.|+++.+....
T Consensus       284 --------~~~~~~~-~~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~  340 (352)
T 2jii_A          284 --------KFVDKPG-PFVGPCGHW----IRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRV  340 (352)
T ss_dssp             --------HHHHSCC-CEECTTSCE----ECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             --------hccCChh-hhhhhcccc----CCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCC
Confidence                    0000000 000000000    00012344667799999999999999999999998876543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.84  E-value=3.1e-21  Score=196.36  Aligned_cols=182  Identities=15%  Similarity=0.133  Sum_probs=128.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC-----eeec
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT-----AYVG  448 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~-----~kl~  448 (614)
                      .++..++||||+ +|+|.+++...  ...+++..+..++.++                  |+|||++.++.     +||+
T Consensus        76 ~~~~~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~  152 (330)
T 2izr_A           76 CGKYNAMVLELL-GPSLEDLFDLC--DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHII  152 (330)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEEC
T ss_pred             cCCccEEEEEeC-CCCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEE
Confidence            356789999999 99999999753  2368999999988888                  99999999887     9999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++.+..................||+.|+| |.  ...++.++|||||||+++||+||+.||........  .... 
T Consensus       153 DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~--~~~~-  229 (330)
T 2izr_A          153 DFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTL--KERY-  229 (330)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSH--HHHH-
T ss_pred             EcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccH--HHHH-
Confidence            999999765443211111112345789999977 87  66789999999999999999999999986432211  0000 


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                             ..+.........           +...+....+.+++..|++.+|.+||++.+|++.|+.+....
T Consensus       230 -------~~i~~~~~~~~~-----------~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~  283 (330)
T 2izr_A          230 -------QKIGDTKRATPI-----------EVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK  283 (330)
T ss_dssp             -------HHHHHHHHHSCH-----------HHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             -------HHHHhhhccCCH-----------HHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence                   000000000000           000000115567778999999999999999999999887654

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.84  E-value=9.9e-22  Score=200.29  Aligned_cols=178  Identities=20%  Similarity=0.217  Sum_probs=126.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-----------CCcccCHHHHHHHHhhC------------------CCceeeCC
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-----------ATRRLDLAEGLKIAVDI------------------PSNVLLDY  441 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-----------~~~~l~~~~~~~ia~~i------------------~~NILld~  441 (614)
                      ..++..++||||+++|+|.+++....           ....+++..+..++.++                  |+||+++.
T Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~  199 (333)
T 2i1m_A          120 THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN  199 (333)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEG
T ss_pred             ecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECC
Confidence            34567899999999999999997431           12357888888888777                  99999999


Q ss_pred             CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccC
Q 046036          442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADC  517 (614)
Q Consensus       442 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~  517 (614)
                      ++.+||+|||+++........     .......||+.|+| |.  ...++.++|||||||+++||+| |+.||...... 
T Consensus       200 ~~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-  273 (333)
T 2i1m_A          200 GHVAKIGDFGLARDIMNDSNY-----IVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN-  273 (333)
T ss_dssp             GGEEEBCCCGGGCCGGGCTTS-----EECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS-
T ss_pred             CCeEEECccccccccccccce-----eecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh-
Confidence            999999999999876543221     12334567889977 86  6778999999999999999999 99998753211 


Q ss_pred             chHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          518 LSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                                      +.+...+..........         .....+.+++..|++.+|++|||+.||++.|+++....
T Consensus       274 ----------------~~~~~~~~~~~~~~~~~---------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~  328 (333)
T 2i1m_A          274 ----------------SKFYKLVKDGYQMAQPA---------FAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQED  328 (333)
T ss_dssp             ----------------HHHHHHHHHTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHhcCCCCCCCC---------CCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhh
Confidence                            11111111111100000         01123446777999999999999999999999887665


Q ss_pred             hc
Q 046036          598 LG  599 (614)
Q Consensus       598 ~~  599 (614)
                      .+
T Consensus       329 ~~  330 (333)
T 2i1m_A          329 RR  330 (333)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.84  E-value=3.8e-21  Score=191.14  Aligned_cols=171  Identities=20%  Similarity=0.293  Sum_probs=125.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~  166 (283)
T 3gen_A           89 TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGL  166 (283)
T ss_dssp             CSSSSEEEEECCCTTCBHHHHHHCG--GGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTG
T ss_pred             ecCCCeEEEEeccCCCcHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccc
Confidence            4566789999999999999999753  2358899888888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......||+.|+| |.  ...++.++||||+||+++||+| |+.||......            
T Consensus       167 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~------------  228 (283)
T 3gen_A          167 SRYVLDDEY------TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS------------  228 (283)
T ss_dssp             GGGBCCHHH------HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH------------
T ss_pred             ccccccccc------ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh------------
Confidence            987643321      12233557788977 87  5778999999999999999999 99999753211            


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                           +... .+..........  .       ....+.++...|++.+|++|||+.|+++.|+++.+.
T Consensus       229 -----~~~~-~~~~~~~~~~~~--~-------~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~  281 (283)
T 3gen_A          229 -----ETAE-HIAQGLRLYRPH--L-------ASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE  281 (283)
T ss_dssp             -----HHHH-HHHTTCCCCCCT--T-------CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -----HHHH-HHhcccCCCCCC--c-------CCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence                 1111 111111111100  0       012344677899999999999999999999988654

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.84  E-value=2.2e-21  Score=195.83  Aligned_cols=174  Identities=21%  Similarity=0.303  Sum_probs=125.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCC---------------------CcccCHHHHHHHHhhC----------------
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEA---------------------TRRLDLAEGLKIAVDI----------------  433 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~---------------------~~~l~~~~~~~ia~~i----------------  433 (614)
                      ..++..++||||+++|+|.+++.....                     ...+++..+.+++.++                
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~d  175 (314)
T 2ivs_A           96 SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRD  175 (314)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             ecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccc
Confidence            345678999999999999999975421                     2348888888888877                


Q ss_pred             --CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CC
Q 046036          434 --PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GK  507 (614)
Q Consensus       434 --~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~  507 (614)
                        |+||+++.++.+||+|||+++........     .......||+.|+| |.  ...++.++|||||||+++||+| |+
T Consensus       176 ikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~  250 (314)
T 2ivs_A          176 LAARNILVAEGRKMKISDFGLSRDVYEEDSY-----VKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGG  250 (314)
T ss_dssp             CSGGGEEEETTTEEEECCCTTCEECTTTSCE-----ECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred             cchheEEEcCCCCEEEccccccccccccccc-----eeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCC
Confidence              99999999999999999999876543321     22334567889977 86  6678999999999999999999 99


Q ss_pred             CCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHH
Q 046036          508 RPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMV  587 (614)
Q Consensus       508 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~  587 (614)
                      .||......  .+..                .+........  ..       .....+.++...|++.+|++||++.|++
T Consensus       251 ~p~~~~~~~--~~~~----------------~~~~~~~~~~--~~-------~~~~~~~~li~~~l~~dp~~Rps~~~l~  303 (314)
T 2ivs_A          251 NPYPGIPPE--RLFN----------------LLKTGHRMER--PD-------NCSEEMYRLMLQCWKQEPDKRPVFADIS  303 (314)
T ss_dssp             CSSTTCCGG--GHHH----------------HHHTTCCCCC--CT-------TCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCCCCCHH--HHHH----------------HhhcCCcCCC--Cc-------cCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence            999753221  1111                1111110000  00       1112344677899999999999999999


Q ss_pred             HHHHHhHHH
Q 046036          588 MEMNVIKEV  596 (614)
Q Consensus       588 ~~L~~i~~~  596 (614)
                      +.|+++...
T Consensus       304 ~~l~~~~~~  312 (314)
T 2ivs_A          304 KDLEKMMVK  312 (314)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999988654

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.84  E-value=2.6e-21  Score=192.16  Aligned_cols=171  Identities=20%  Similarity=0.249  Sum_probs=114.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  164 (281)
T 1mp8_A           87 ENPVWIIMELCTLGELRSFLQVR--KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR  164 (281)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHT--TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred             cCccEEEEecCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECcccccc
Confidence            45678999999999999999754  2358888888887777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......      .......+|+.|+| |.  ...++.++|||||||+++||++ |+.||......  ....        
T Consensus       165 ~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~--~~~~--------  228 (281)
T 1mp8_A          165 YMEDSTY------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIG--------  228 (281)
T ss_dssp             --------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHH--------
T ss_pred             ccCcccc------cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH--HHHH--------
Confidence            7654321      12234567888977 87  6778999999999999999997 99999753221  1111        


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                             ........+.+.          .....+.++...|++.+|++|||+.|+++.|+.+.+...
T Consensus       229 -------~i~~~~~~~~~~----------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~  279 (281)
T 1mp8_A          229 -------RIENGERLPMPP----------NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEK  279 (281)
T ss_dssp             -------HHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             -------HHHcCCCCCCCC----------CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhc
Confidence                   111111000110          111234467779999999999999999999999876543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=5.2e-21  Score=182.41  Aligned_cols=153  Identities=18%  Similarity=0.215  Sum_probs=109.3

Q ss_pred             EecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccC
Q 046036          128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHML  207 (614)
Q Consensus       128 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l  207 (614)
                      +++++|+++ .+|..+.  ++|+.|+|++|+|++..+..+..+++|++|+|++|.|++..|..|.++++|++|+|++|.+
T Consensus        16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            345566655 3343332  4666666666666655555666666777777777777666666677777777777777777


Q ss_pred             CCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccC
Q 046036          208 SDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQL  283 (614)
Q Consensus       208 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  283 (614)
                      +...+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            7665566677777777777777777777778888888888888888888777777888888888888888887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=4.2e-21  Score=191.37  Aligned_cols=167  Identities=23%  Similarity=0.323  Sum_probs=69.6

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +|+.|++++|.++. ++ .+..+++|++|+|++|++++..+  +..+++|++|+            |++|++++ + ..+
T Consensus        47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~------------l~~n~l~~-~-~~l  108 (291)
T 1h6t_A           47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF------------LDENKVKD-L-SSL  108 (291)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE------------CCSSCCCC-G-GGG
T ss_pred             cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE------------CCCCcCCC-C-hhh
Confidence            44444444444442 22 24444444444444444443222  44444444443            44444442 1 124


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchH
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEH  223 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  223 (614)
                      ..+++|++|+|++|++++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.
T Consensus       109 ~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence            4444444444444444421  2233444444444444444422  234444444444444444443322  333344444


Q ss_pred             HhccCccccccCCccccCCCccceEEccCCcCc
Q 046036          224 LLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       224 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  256 (614)
                      |+|++|.+++ ++ .+..+++|+.|++++|+++
T Consensus       183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             EECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             EECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            4444444332 12 1334444444444444443

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.83  E-value=5.6e-21  Score=193.45  Aligned_cols=163  Identities=17%  Similarity=0.178  Sum_probs=119.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC--CCCeeecccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY--DMTAYVGDFG  451 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~--~~~~kl~DfG  451 (614)
                      ..+..++|||||++|+|.+++...  ...+++..+..++.++                  |+|||++.  ++.+||+|||
T Consensus        72 ~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg  149 (321)
T 1tki_A           72 SMEELVMIFEFISGLDIFERINTS--AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFG  149 (321)
T ss_dssp             ETTEEEEEECCCCCCBHHHHHTSS--SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECC
Confidence            356789999999999999999753  2358888888888877                  99999997  7899999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++......        ......||+.|+| |.  ...++.++|||||||++|||+||+.||.....             
T Consensus       150 ~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-------------  208 (321)
T 1tki_A          150 QARQLKPGD--------NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN-------------  208 (321)
T ss_dssp             TCEECCTTC--------EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH-------------
T ss_pred             CCeECCCCC--------ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH-------------
Confidence            998775432        2345789999977 87  55678999999999999999999999975321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          .+.+..............       ..+....+.++...|++.+|++|||+.|+++
T Consensus       209 ----~~~~~~i~~~~~~~~~~~-------~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          209 ----QQIIENIMNAEYTFDEEA-------FKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             ----HHHHHHHHHTCCCCCHHH-------HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ----HHHHHHHHcCCCCCChhh-------hccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                112222222211111000       0111223456778999999999999999986

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.83  E-value=3.7e-21  Score=194.40  Aligned_cols=174  Identities=21%  Similarity=0.257  Sum_probs=125.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCceeeCC
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVLLDY  441 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NILld~  441 (614)
                      +...++||||+++|+|.+++.....             ...+++..+..++.++                  |+||+++.
T Consensus       104 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~  183 (316)
T 2xir_A          104 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE  183 (316)
T ss_dssp             TSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG
T ss_pred             CCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECC
Confidence            3458999999999999999986432             1227888888887777                  99999999


Q ss_pred             CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccC
Q 046036          442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADC  517 (614)
Q Consensus       442 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~  517 (614)
                      ++.+||+|||+++........     .......||+.|+| |.  ...++.++|||||||+++||+| |+.||.......
T Consensus       184 ~~~~kl~Dfg~~~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~  258 (316)
T 2xir_A          184 KNVVKICDFGLARDIYKDPDY-----VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE  258 (316)
T ss_dssp             GGCEEECCCGGGSCTTTCTTS-----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSH
T ss_pred             CCCEEECCCccccccccCccc-----eeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhH
Confidence            999999999999876543321     22334678899977 87  6778999999999999999999 999997532211


Q ss_pred             chHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          518 LSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                                       .+...+..........  .       ....+.++...|++.+|++|||+.||++.|+.+.+..
T Consensus       259 -----------------~~~~~~~~~~~~~~~~--~-------~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  312 (316)
T 2xir_A          259 -----------------EFCRRLKEGTRMRAPD--Y-------TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  312 (316)
T ss_dssp             -----------------HHHHHHHHTCCCCCCT--T-------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHhccCccCCCCC--C-------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence                             1111111111000000  0       1123446777999999999999999999999887654

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.83  E-value=5.1e-21  Score=203.62  Aligned_cols=182  Identities=17%  Similarity=0.185  Sum_probs=128.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee---CCCCCeeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL---DYDMTAYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl---d~~~~~kl~Df  450 (614)
                      ..+..++||||+ +|+|.+++...  ...++|..+..|+.++                  |+|||+   +.++.+||+||
T Consensus        74 ~~~~~~lvme~~-g~sL~~ll~~~--~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DF  150 (483)
T 3sv0_A           74 EGDYNVLVMDLL-GPSLEDLFNFC--SRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDF  150 (483)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCC
T ss_pred             eCCEEEEEEECC-CCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeC
Confidence            456779999999 99999999743  2358999999988887                  999999   68899999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+++.+..................||+.|+| |.  ...++.++|||||||++|||++|+.||.........  ..    
T Consensus       151 Gla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~--~~----  224 (483)
T 3sv0_A          151 GLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKK--QK----  224 (483)
T ss_dssp             TTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHH--HH----
T ss_pred             CcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHH--HH----
Confidence            9999876543321111122335789999977 87  667899999999999999999999999864322110  00    


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                          ...+....+.....          .........+.+++..|++.+|++||++.+|++.|+.+...
T Consensus       225 ----~~~i~~~~~~~~~~----------~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~  279 (483)
T 3sv0_A          225 ----YEKISEKKVATSIE----------ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR  279 (483)
T ss_dssp             ----HHHHHHHHHHSCHH----------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ----HHHHhhccccccHH----------HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence                01111111111000          00001123455788899999999999999999999988654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=1.3e-20  Score=194.16  Aligned_cols=175  Identities=22%  Similarity=0.181  Sum_probs=91.0

Q ss_pred             cEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCc-CCCCCCEEeccCCcCcccCCccccCCCCCCcc
Q 046036           38 TYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIP-KYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL  116 (614)
Q Consensus        38 ~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  116 (614)
                      +.+++++|+++ .+|..+      +..++.|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|.++++|++|
T Consensus        21 ~~l~c~~~~l~-~iP~~~------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcC-ccCccC------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            45555555555 344431      11455556666655554444454 55556666666555555555555555555555


Q ss_pred             cccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccc---cC
Q 046036          117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEV---GS  193 (614)
Q Consensus       117 ~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~  193 (614)
                      +            |++|+|++..+..|..+++|++|+|++|+|++..|..+..+++|+.|+|++|.|++..+..|   ..
T Consensus        94 ~------------Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A           94 D------------LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             E------------CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             E------------CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence            4            55555555545555555566666666665555555555555556666666665553322223   34


Q ss_pred             CCCCceeccCCccCCCCccccccCcccc--hHHhccCccc
Q 046036          194 LSNTQELDFSEHMLSDEIPITLGNRSKF--EHLLLGGNMF  231 (614)
Q Consensus       194 l~~L~~L~ls~N~l~~~~~~~~~~l~~L--~~L~L~~N~l  231 (614)
                      +++|+.|+|++|+|+...+..+..++.+  +.|+|++|.+
T Consensus       162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            5555555555555554444444444432  4444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=8.1e-21  Score=189.31  Aligned_cols=189  Identities=20%  Similarity=0.274  Sum_probs=137.5

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      +..+.+..+.+++..+  +..+++|++|++++|.++.. + .   +..++ +|++|+|++|++++..+  +..+++|++|
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~---~~~l~-~L~~L~L~~n~l~~~~~--l~~l~~L~~L   95 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-G---IQYLP-NVTKLFLNGNKLTDIKP--LANLKNLGWL   95 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-T---GGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-h---HhcCC-CCCEEEccCCccCCCcc--cccCCCCCEE
Confidence            4445566666664332  45677888888888888733 3 2   56666 78888888888875433  7788888888


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                      +|++|.+++ +| .+..+++|++|+            |++|++++.  ..+..+++|++|++++|++++.  ..+..+++
T Consensus        96 ~l~~n~l~~-~~-~l~~l~~L~~L~------------L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~  157 (291)
T 1h6t_A           96 FLDENKVKD-LS-SLKDLKKLKSLS------------LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK  157 (291)
T ss_dssp             ECCSSCCCC-GG-GGTTCTTCCEEE------------CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred             ECCCCcCCC-Ch-hhccCCCCCEEE------------CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCC
Confidence            888888874 33 377777777766            888888753  4677888888888888888754  45777888


Q ss_pred             CCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccc
Q 046036          173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG  233 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  233 (614)
                      |+.|++++|.+++..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|++..
T Consensus       158 L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            8888888888875544  77888888888888888764 3 47788888888888888874

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.83  E-value=3.3e-21  Score=197.08  Aligned_cols=180  Identities=16%  Similarity=0.160  Sum_probs=124.5

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------------CCceeeCCCCCeeec
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------------~~NILld~~~~~kl~  448 (614)
                      ..++||||+++|+|.+++...    .++|..+.+++.++                          |+||+++.++.+||+
T Consensus       114 ~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~  189 (342)
T 1b6c_B          114 QLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA  189 (342)
T ss_dssp             CEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEEC
T ss_pred             eeEEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEE
Confidence            689999999999999999753    47887777766554                          899999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc-cC-------CCCccCceeehhHHHHHHHhC----------CCC
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VA-------RYQHKGKGYSCGILLLEIMTG----------KRP  509 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~-------~~~~k~DVySfGvvllElltG----------~~p  509 (614)
                      |||+++........   .........||+.|+| |. ..       .++.++|||||||++|||+||          +.|
T Consensus       190 Dfg~~~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p  266 (342)
T 1b6c_B          190 DLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP  266 (342)
T ss_dssp             CCTTCEEEETTTTE---EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred             ECCCceeccccccc---cccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccC
Confidence            99999876543211   0001234679999977 87 22       234789999999999999999          667


Q ss_pred             CCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          510 TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       510 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                      |..........            .+...........+....+..    ..++...+.+++..|++.+|++|||+.||++.
T Consensus       267 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          267 YYDLVPSDPSV------------EEMRKVVCEQKLRPNIPNRWQ----SCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             TTTTSCSSCCH------------HHHHHHHTTSCCCCCCCGGGG----TSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             ccccCcCcccH------------HHHHHHHHHHHhCCCCccccc----chhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence            65432221111            111111122222222211110    12445567788899999999999999999999


Q ss_pred             HHHhHHHh
Q 046036          590 MNVIKEVL  597 (614)
Q Consensus       590 L~~i~~~~  597 (614)
                      |+++.++.
T Consensus       331 L~~i~~~~  338 (342)
T 1b6c_B          331 LSQLSQQE  338 (342)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99987653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.83  E-value=2.2e-21  Score=205.90  Aligned_cols=168  Identities=25%  Similarity=0.307  Sum_probs=117.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++|||||++|+|.+++... ....+++..+.+++.++                  |+|||+++++.+||+|||+++.
T Consensus       251 ~~~~iv~e~~~~gsL~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  329 (452)
T 1fmk_A          251 EPIYIVTEYMSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARL  329 (452)
T ss_dssp             SSCEEEECCCTTCBHHHHHSHH-HHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-
T ss_pred             CceEEEehhhcCCCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCcccee
Confidence            5679999999999999999743 12358898888888877                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ......      .......+++.|+| |.  ...++.++|||||||++|||+| |+.||.....                
T Consensus       330 ~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~----------------  387 (452)
T 1fmk_A          330 IEDNEY------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----------------  387 (452)
T ss_dssp             -------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----------------
T ss_pred             cCCCce------ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH----------------
Confidence            654321      12233557888977 87  6789999999999999999999 9999975321                


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                       .+.......+...+.+.          .+...+.+++..||+.+|++|||++++++.|+.+..
T Consensus       388 -~~~~~~i~~~~~~~~~~----------~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~  440 (452)
T 1fmk_A          388 -REVLDQVERGYRMPCPP----------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT  440 (452)
T ss_dssp             -HHHHHHHHTTCCCCCCT----------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTS
T ss_pred             -HHHHHHHHcCCCCCCCC----------CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhc
Confidence             11111111111111111          112234567789999999999999999999987653

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.83  E-value=4.9e-21  Score=189.04  Aligned_cols=164  Identities=21%  Similarity=0.301  Sum_probs=110.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC---------------------CCceeeCC--------
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI---------------------PSNVLLDY--------  441 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i---------------------~~NILld~--------  441 (614)
                      ..++..++||||+++|+|.+++...    .+++..+..++.++                     |+||+++.        
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~  151 (271)
T 3dtc_A           76 LKEPNLCLVMEFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLS  151 (271)
T ss_dssp             CCC--CEEEEECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCS
T ss_pred             ecCCceEEEEEcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEeccccccccc
Confidence            3456789999999999999999643    57888887776665                     89999986        


Q ss_pred             CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCc
Q 046036          442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL  518 (614)
Q Consensus       442 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~  518 (614)
                      ++.+|++|||+++......         .....||+.|+| |.  ...++.++||||||++++||+||+.||......  
T Consensus       152 ~~~~kl~Dfg~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--  220 (271)
T 3dtc_A          152 NKILKITDFGLAREWHRTT---------KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGL--  220 (271)
T ss_dssp             SCCEEECCCCC----------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHH--
T ss_pred             CcceEEccCCccccccccc---------ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--
Confidence            6789999999998665432         224679999977 87  667899999999999999999999999753211  


Q ss_pred             hHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          519 SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       519 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                                     +................         .....+.+++..|++.+|++|||+.|+++.|+++
T Consensus       221 ---------------~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          221 ---------------AVAYGVAMNKLALPIPS---------TCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             ---------------HHHHHHHTSCCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             ---------------HHHHhhhcCCCCCCCCc---------ccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence                           11111111111111000         1112344677799999999999999999999754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=9.1e-21  Score=195.21  Aligned_cols=182  Identities=23%  Similarity=0.210  Sum_probs=128.8

Q ss_pred             ccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCcccc-CCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           65 LRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIG-KLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        65 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      -+.+++++|.++ .+|..+..  .++.|+|++|+|++..+..|. ++++|+.|+            |++|+|++..+..|
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~------------L~~N~i~~i~~~~~   84 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLL------------LSHNHLNFISSEAF   84 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEE------------CCSSCCCEECTTTT
T ss_pred             CCEEEeCCCCcC-ccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEE------------CCCCcCCccChhhc
Confidence            367899999987 57776643  688899999999877777776 788888777            88888887777778


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchH
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEH  223 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  223 (614)
                      ..+++|++|+|++|+|++..+..+..+++|+.|+|++|.|++..+..|..+++|+.|+|++|.|++..+..|..      
T Consensus        85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~------  158 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD------  158 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------
T ss_pred             cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC------
Confidence            88888888888888888666667778888888888888887766777777777777777777776543333311      


Q ss_pred             HhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCC--CCEEECcCCcCccc
Q 046036          224 LLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPF--LENLNLSFNNFEGQ  282 (614)
Q Consensus       224 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~ls~N~l~~~  282 (614)
                                     +..+++|+.|+|++|+|++..+..+..++.  ++.|++++|++.+.
T Consensus       159 ---------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          159 ---------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             ------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ---------------cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence                           034555566666666665444444555554  35666666666643

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.83  E-value=1.9e-21  Score=197.20  Aligned_cols=165  Identities=20%  Similarity=0.303  Sum_probs=119.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus        75 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~  151 (323)
T 3tki_A           75 REGNIQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGL  151 (323)
T ss_dssp             ECSSEEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             ecCCeEEEEEEcCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeec
Confidence            4466789999999999999999753   358899888888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.+......     ......+||+.|+| |.  ... .+.++||||+||+++||+||+.||............|.....
T Consensus       152 a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~  226 (323)
T 3tki_A          152 ATVFRYNNRE-----RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKT  226 (323)
T ss_dssp             CEECEETTEE-----CCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCT
T ss_pred             cceeccCCcc-----cccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccc
Confidence            9876433211     22345789999977 87  333 478899999999999999999999764332222222221110


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                      ...+.  .       .....+.++...|++.+|++|||+.|+++
T Consensus       227 ----------------~~~~~--~-------~~~~~~~~li~~~L~~dP~~R~t~~eil~  261 (323)
T 3tki_A          227 ----------------YLNPW--K-------KIDSAPLALLHKILVENPSARITIPDIKK  261 (323)
T ss_dssp             ----------------TSTTG--G-------GSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ----------------cCCcc--c-------cCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence                            00000  0       11122345777999999999999999975

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=2.3e-20  Score=203.83  Aligned_cols=187  Identities=20%  Similarity=0.277  Sum_probs=87.4

Q ss_pred             CeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEe
Q 046036           14 QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLG   93 (614)
Q Consensus        14 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~   93 (614)
                      ..+.+..+.+.+..+  +..+++|+.|+|++|.+.. +| .   +..++ +|+.|+|++|+|++..|  +..+++|+.|+
T Consensus        24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~---l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-G---IQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-T---GGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-H---HccCC-CCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            334444444443322  3344455555555555542 22 1   34444 45555555555543222  44555555555


Q ss_pred             ccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCC
Q 046036           94 LDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTL  173 (614)
Q Consensus        94 L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  173 (614)
                      |++|.+++ +| .+..+++|+.|+            |++|+|++.  +.+..+++|+.|+|++|.+++.  ..+..+++|
T Consensus        94 Ls~N~l~~-l~-~l~~l~~L~~L~------------Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L  155 (605)
T 1m9s_A           94 LDENKIKD-LS-SLKDLKKLKSLS------------LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL  155 (605)
T ss_dssp             CCSSCCCC-CT-TSTTCTTCCEEE------------CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC
T ss_pred             CcCCCCCC-Ch-hhccCCCCCEEE------------ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC
Confidence            55555542 22 344444444444            555555432  2344555555555555555432  334445555


Q ss_pred             CEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCcccc
Q 046036          174 SSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ  232 (614)
Q Consensus       174 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  232 (614)
                      +.|+|++|.|++..|  +..+++|+.|+|++|.|++.  ..+..+++|+.|+|++|++.
T Consensus       156 ~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          156 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            555555555554333  45555555555555555442  23445555555555555554

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.83  E-value=4.1e-21  Score=192.00  Aligned_cols=172  Identities=20%  Similarity=0.345  Sum_probs=117.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        81 ~~~~~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~  157 (294)
T 4eqm_A           81 EEDDCYYLVMEYIEGPTLSEYIESH---GPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGI  157 (294)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSS
T ss_pred             eeCCeEEEEEeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCC
Confidence            3456789999999999999999753   358898888888777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......      .......||+.|+| |.  ...++.++||||+||++|||+||+.||......             
T Consensus       158 ~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-------------  218 (294)
T 4eqm_A          158 AKALSETSL------TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV-------------  218 (294)
T ss_dssp             STTC-------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH-------------
T ss_pred             ccccccccc------cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-------------
Confidence            987654321      12334679999977 87  667889999999999999999999999753211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-CHHHHHHHHHHhH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-GVREMVMEMNVIK  594 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-sm~ev~~~L~~i~  594 (614)
                          +.....+.....   .......   .+....+.++...|++.+|++|| ++.++.+.|+.+.
T Consensus       219 ----~~~~~~~~~~~~---~~~~~~~---~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~  274 (294)
T 4eqm_A          219 ----SIAIKHIQDSVP---NVTTDVR---KDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVL  274 (294)
T ss_dssp             ----HHHHHHHSSCCC---CHHHHSC---TTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred             ----HHHHHHhhccCC---Ccchhcc---cCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence                011111111100   0000000   01112344677799999999998 8999998887654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.83  E-value=7.7e-21  Score=192.84  Aligned_cols=158  Identities=22%  Similarity=0.244  Sum_probs=116.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||++
T Consensus        85 ~~~~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a  161 (328)
T 3fe3_A           85 TEKTLYLIMEYASGGEVFDYLVAH---GRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS  161 (328)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCC
T ss_pred             ECCEEEEEEECCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCc
Confidence            456789999999999999999753   347888887777776                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCC-CccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARY-QHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~-~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +......        .....+||++|+| |.  ...+ +.++||||+||+++||+||+.||+....              
T Consensus       162 ~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--------------  219 (328)
T 3fe3_A          162 NEFTVGG--------KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL--------------  219 (328)
T ss_dssp             GGGSSSC--------GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             eecCCCC--------ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH--------------
Confidence            8765432        2345789999977 87  4444 5899999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+........... .|..   .       ...+.++...|++.+|.+|||++|+++
T Consensus       220 ---~~~~~~i~~~~~~-~p~~---~-------s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          220 ---KELRERVLRGKYR-IPFY---M-------STDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             ---HHHHHHHHHCCCC-CCTT---S-------CHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             ---HHHHHHHHhCCCC-CCCC---C-------CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence               1222222222111 1111   1       112335667899999999999999985

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.83  E-value=3.5e-21  Score=212.25  Aligned_cols=170  Identities=19%  Similarity=0.263  Sum_probs=121.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++|||||++|+|.+++...   ..++|..+..|+.++                  |+|||++.++.+||+|||+++
T Consensus       441 ~~~~~lv~E~~~~g~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~  517 (635)
T 4fl3_A          441 AESWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSK  517 (635)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHH
T ss_pred             cCCEEEEEEccCCCCHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCcc
Confidence            45578999999999999999753   358999988888877                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .+......    ....+...||+.|+| |.  ...++.++|||||||++|||+| |+.||......              
T Consensus       518 ~~~~~~~~----~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--------------  579 (635)
T 4fl3_A          518 ALRADENY----YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--------------  579 (635)
T ss_dssp             HTTC-----------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--------------
T ss_pred             ccccCccc----cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--------------
Confidence            77544321    122334567889977 87  6689999999999999999999 99999753221              


Q ss_pred             ChHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          531 SVMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                         +.. ..+..... ..+.          .+...+.+++..||+.+|++||++.+|+++|+.+....
T Consensus       580 ---~~~-~~i~~~~~~~~p~----------~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l  633 (635)
T 4fl3_A          580 ---EVT-AMLEKGERMGCPA----------GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  633 (635)
T ss_dssp             ---HHH-HHHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             ---HHH-HHHHcCCCCCCCC----------CCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence               111 11111111 1111          11233456778999999999999999999999876544

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.83  E-value=6.6e-21  Score=190.92  Aligned_cols=177  Identities=20%  Similarity=0.285  Sum_probs=123.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||++++++.+||+|||+
T Consensus        97 ~~~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~  174 (298)
T 3f66_A           97 RSEGSPLVVLPYMKHGDLRNFIRNE--THNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL  174 (298)
T ss_dssp             CSSSCCEEEEECCTTCBHHHHHHCT--TCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGG
T ss_pred             cCCCceEEEEeCCCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccc
Confidence            3456779999999999999999753  3457888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhC-CCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTG-KRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG-~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++........   .........||+.|+| |.  ...++.++||||+||+++||+|| ..||......  ...       
T Consensus       175 a~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~--~~~-------  242 (298)
T 3f66_A          175 ARDMYDKEYY---SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DIT-------  242 (298)
T ss_dssp             GCCCSCGGGC---BC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT--THH-------
T ss_pred             cccccccchh---ccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH--HHH-------
Confidence            9876543211   0112334568889977 76  66789999999999999999995 4455432111  111       


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                              ...........+..          ....+.++...|++.+|++|||+.|+++.|+++...+.+
T Consensus       243 --------~~~~~~~~~~~~~~----------~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~  295 (298)
T 3f66_A          243 --------VYLLQGRRLLQPEY----------CPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG  295 (298)
T ss_dssp             --------HHHHTTCCCCCCTT----------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred             --------HHHhcCCCCCCCcc----------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence                    11111111111111          012344677799999999999999999999998876543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=5.7e-20  Score=175.22  Aligned_cols=152  Identities=19%  Similarity=0.209  Sum_probs=96.9

Q ss_pred             cEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccc
Q 046036           38 TYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN  117 (614)
Q Consensus        38 ~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  117 (614)
                      +.+++++|+++ .+|..+   .   .+|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~   86 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---P---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV   86 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---C---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred             CEEEcCCCCcC-cCCCcc---C---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence            45666666665 444442   1   2566666666666655555666666666666666666666666666666666555


Q ss_pred             ccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCC
Q 046036          118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNT  197 (614)
Q Consensus       118 l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  197 (614)
                                  |++|+|+...+..|..+++|++|+|++|+|++..|..+..+++|+.|+|++|.|++..+..|..+++|
T Consensus        87 ------------Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B           87 ------------LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             ------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ------------CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence                        66666665555556666677777777777666666666666777777777777766555566667777


Q ss_pred             ceeccCCccCC
Q 046036          198 QELDFSEHMLS  208 (614)
Q Consensus       198 ~~L~ls~N~l~  208 (614)
                      +.|+|++|.+.
T Consensus       155 ~~L~L~~N~~~  165 (220)
T 2v9t_B          155 QTMHLAQNPFI  165 (220)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEeCCCCcC
Confidence            77777777664

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.83  E-value=8.3e-21  Score=194.98  Aligned_cols=163  Identities=18%  Similarity=0.207  Sum_probs=118.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC----Ceeec
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM----TAYVG  448 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~----~~kl~  448 (614)
                      ..++..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++    .+||+
T Consensus        85 ~~~~~~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~  161 (361)
T 2yab_A           85 ENRTDVVLILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLI  161 (361)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHTTC---SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred             EeCCEEEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEE
Confidence            3466789999999999999999753   358888888888877                  9999998877    79999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++......        .....+||++|+| |.  ...++.++||||+||++|||++|+.||.....          
T Consensus       162 DFG~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~----------  223 (361)
T 2yab_A          162 DFGLAHEIEDGV--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK----------  223 (361)
T ss_dssp             CCSSCEECCTTC--------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH----------
T ss_pred             ecCCceEcCCCC--------ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH----------
Confidence            999998765432        2344689999977 87  56789999999999999999999999975321          


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             .+.+...........+..       ....-..+.++...|+..+|++|||+.|+++
T Consensus       224 -------~~~~~~i~~~~~~~~~~~-------~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          224 -------QETLANITAVSYDFDEEF-------FSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             -------HHHHHHHHTTCCCCCHHH-------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             -------HHHHHHHHhcCCCCCchh-------ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                   111111111111110000       0011122345667999999999999999984

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.83  E-value=9.1e-21  Score=195.88  Aligned_cols=169  Identities=17%  Similarity=0.143  Sum_probs=122.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee--CCCCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL--DYDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl--d~~~~~kl~Df  450 (614)
                      ..++..++|||||++|+|.+++...  ...+++..+..++.++                  |+|||+  +.++.+||+||
T Consensus       156 ~~~~~~~lv~E~~~~~~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DF  233 (373)
T 2x4f_A          156 ESKNDIVLVMEYVDGGELFDRIIDE--SYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDF  233 (373)
T ss_dssp             ECSSEEEEEEECCTTCEEHHHHHHT--GGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCC
T ss_pred             EECCEEEEEEeCCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeC
Confidence            3466789999999999999998753  3358888888887777                  999999  67789999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+++.......        ....+||++|+| |+  ...++.++|||||||+++||+||+.||.....            
T Consensus       234 G~a~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~------------  293 (373)
T 2x4f_A          234 GLARRYKPREK--------LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND------------  293 (373)
T ss_dssp             SSCEECCTTCB--------CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH------------
T ss_pred             CCceecCCccc--------cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH------------
Confidence            99987754321        234579999977 87  66789999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHh
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM--EMNVI  593 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i  593 (614)
                           .+.+...+...+...+...+..       -..+.++...|++.+|++|||+.|+++  .+...
T Consensus       294 -----~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~  349 (373)
T 2x4f_A          294 -----AETLNNILACRWDLEDEEFQDI-------SEEAKEFISKLLIKEKSWRISASEALKHPWLSDH  349 (373)
T ss_dssp             -----HHHHHHHHHTCCCSCSGGGTTS-------CHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred             -----HHHHHHHHhccCCCChhhhccC-------CHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence                 1122222222222111111111       123446777999999999999999996  45444

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.83  E-value=1.1e-20  Score=186.34  Aligned_cols=163  Identities=21%  Similarity=0.298  Sum_probs=117.9

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeCCCCCeeecccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld~~~~~kl~DfGla  453 (614)
                      +..++||||+++|+|.++++... ...+++..+..++.++                    |+||+++.++.++++|||++
T Consensus        82 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~  160 (271)
T 3kmu_A           82 PHPTLITHWMPYGSLYNVLHEGT-NFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVK  160 (271)
T ss_dssp             SSCEEEEECCTTCBHHHHHHSCS-SCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSC
T ss_pred             CCeEeeecccCCCcHHHHHhhcc-cCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccce
Confidence            66799999999999999998643 3358999888887766                    89999999999999999987


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cC---CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA---RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~---~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      .....            ....||+.|+| |.  ..   .++.++|||||||++|||+||+.||.....            
T Consensus       161 ~~~~~------------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~------------  216 (271)
T 3kmu_A          161 FSFQS------------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN------------  216 (271)
T ss_dssp             CTTSC------------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH------------
T ss_pred             eeecc------------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh------------
Confidence            54322            23578999977 87  32   233479999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                           .+...........+...  ...       ...+.++...|++.+|++|||+.|+++.|+++++
T Consensus       217 -----~~~~~~~~~~~~~~~~~--~~~-------~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          217 -----MEIGMKVALEGLRPTIP--PGI-------SPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             -----HHHHHHHHHSCCCCCCC--TTC-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHhcCCCCCCC--CCC-------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence                 11111222221111110  011       1234456678999999999999999999998754

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.83  E-value=2.2e-21  Score=197.11  Aligned_cols=191  Identities=20%  Similarity=0.291  Sum_probs=126.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+...++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~  174 (327)
T 3lxl_A           97 GRQSLRLVMEYLPSGCLRDFLQRH--RARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA  174 (327)
T ss_dssp             SSCEEEEEEECCTTCBHHHHHHHH--GGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGC
T ss_pred             CCceEEEEEeecCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccc
Confidence            456688999999999999999753  2358999998888877                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +........    ........||+.|+| |.  ...++.++|||||||+++||+||+.||.......  ...+.. ....
T Consensus       175 ~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~--~~~~~~-~~~~  247 (327)
T 3lxl_A          175 KLLPLDKDY----YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF--LRMMGC-ERDV  247 (327)
T ss_dssp             EECCTTCSE----EECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH--HHHCC-----C
T ss_pred             eecccCCcc----ceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchh--hhhccc-cccc
Confidence            877543321    112334568888977 87  6678899999999999999999999986422110  000000 0001


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcc
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGV  600 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~  600 (614)
                      .....+...+........  ..       .....+.+++..|++.+|++|||+.|+++.|+.+.......
T Consensus       248 ~~~~~~~~~~~~~~~~~~--~~-------~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~  308 (327)
T 3lxl_A          248 PALSRLLELLEEGQRLPA--PP-------ACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGC  308 (327)
T ss_dssp             CHHHHHHHHHHTTCCCCC--CT-------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-------
T ss_pred             ccHHHHHHHhhcccCCCC--CC-------cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCc
Confidence            111222222222211111  11       11223456778999999999999999999999887655443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=5.1e-20  Score=175.55  Aligned_cols=158  Identities=21%  Similarity=0.263  Sum_probs=129.6

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      -+.+++++|.++ .+|..+..  .+++|+|++|+|++..|..+  |.+++ +|++|+|++|+|++..+..|..+++|++|
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~~--~~~~L~L~~N~l~~~~~~~~--~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   86 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGI--FKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEI   86 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCCT--TCSEEECCSSCCCEECCCCC--GGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCEeEeCCCCcc-cCccCCCC--CCCEEEcCCCcCCccCchhh--hccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence            358888888888 46766543  46889999999887755432  66776 88899999999887777788888999999


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                      +|++|++++..+..|..+++|++|+            |++|+|++..|..|..+++|++|+|++|+|++..|..+..+++
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~------------Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  154 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLM------------LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS  154 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEE------------CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEE------------CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC
Confidence            9999999887777888888888777            9999998888888888999999999999998877888888889


Q ss_pred             CCEEEcCCCCCccCCc
Q 046036          173 LSSIDFAHNNFNGSLP  188 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~  188 (614)
                      |+.|+|++|.+++..+
T Consensus       155 L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          155 LSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCEEECCSCCEECSGG
T ss_pred             CCEEEecCcCCcCCCc
Confidence            9999999998876543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.83  E-value=6e-21  Score=187.90  Aligned_cols=171  Identities=23%  Similarity=0.325  Sum_probs=124.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...+++..+.+++.++                  |+||+++.++.+||+|||+
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~  150 (267)
T 3t9t_A           73 LEQAPICLVTEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGM  150 (267)
T ss_dssp             CSSSSCEEEECCCTTCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTG
T ss_pred             ccCCCeEEEEeCCCCCcHHHHHhhC--cccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEccccc
Confidence            3456789999999999999999754  2358888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......|++.|+| |.  ...++.++||||||++++||+| |+.||.....             
T Consensus       151 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-------------  211 (267)
T 3t9t_A          151 TRFVLDDQY------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-------------  211 (267)
T ss_dssp             GGGBCCHHH------HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-------------
T ss_pred             ccccccccc------cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH-------------
Confidence            987643211      12233567888977 87  5778999999999999999999 8999875321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                          .+.... +..........  ..       ...+.+++..|++.+|++|||+.|+++.|+++.+.
T Consensus       212 ----~~~~~~-i~~~~~~~~~~--~~-------~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          212 ----SEVVED-ISTGFRLYKPR--LA-------STHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             ----HHHHHH-HHTTCCCCCCT--TS-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ----HHHHHH-HhcCCcCCCCc--cC-------cHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence                111111 11111110000  01       12344677899999999999999999999998764

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.83  E-value=2e-20  Score=197.35  Aligned_cols=164  Identities=20%  Similarity=0.218  Sum_probs=119.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC---CCCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD---YDMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld---~~~~~kl~D  449 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++   .++.+||+|
T Consensus        80 ~~~~~~~lv~E~~~gg~L~~~i~~~---~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~D  156 (444)
T 3soa_A           80 SEEGHHYLIFDLVTGGELFEDIVAR---EYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLAD  156 (444)
T ss_dssp             ECSSEEEEEECCCBCCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECC
T ss_pred             EECCEEEEEEEeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEcc
Confidence            4567789999999999999999754   358888888887777                  9999998   457899999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||+++......       .......||++|+| |.  ...++.++||||+||++|||++|+.||.....           
T Consensus       157 FG~a~~~~~~~-------~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~-----------  218 (444)
T 3soa_A          157 FGLAIEVEGEQ-------QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ-----------  218 (444)
T ss_dssp             CSSCBCCCTTC-------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----------
T ss_pred             CceeEEecCCC-------ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH-----------
Confidence            99998765432       12345789999977 87  55789999999999999999999999965321           


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                            .+.......+.............       ..+.++...|++.+|++|||+.|+++
T Consensus       219 ------~~~~~~i~~~~~~~~~~~~~~~s-------~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          219 ------HRLYQQIKAGAYDFPSPEWDTVT-------PEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             ------HHHHHHHHHTCCCCCTTTTTTSC-------HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ------HHHHHHHHhCCCCCCccccccCC-------HHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                  12222222222211111111111       22345667999999999999999986

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.83  E-value=1.1e-20  Score=190.61  Aligned_cols=172  Identities=24%  Similarity=0.310  Sum_probs=117.9

Q ss_pred             ceeEEecccCCCchhhhccCCC---CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNE---ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~---~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..++||||+++|+|.+++....   ....+++..+.+++.++                  |+||+++.++.+||+|||++
T Consensus       115 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~  194 (313)
T 3brb_A          115 KPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLS  194 (313)
T ss_dssp             CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSCSCC
T ss_pred             ccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeecCcc
Confidence            4589999999999999985321   34568999999888887                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........     .......|++.|+| |.  ...++.++|||||||+++||+| |+.||......             
T Consensus       195 ~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-------------  256 (313)
T 3brb_A          195 KKIYSGDYY-----RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH-------------  256 (313)
T ss_dssp             ---------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-------------
T ss_pred             eeccccccc-----CcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH-------------
Confidence            876543221     12234567888976 77  6778999999999999999999 88898753221             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                          +..+..........+.          .....+.++...|++.+|++|||+.++++.|+.+.+...
T Consensus       257 ----~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp  311 (313)
T 3brb_A          257 ----EMYDYLLHGHRLKQPE----------DCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP  311 (313)
T ss_dssp             ----GHHHHHHTTCCCCCBT----------TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred             ----HHHHHHHcCCCCCCCc----------cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence                1111111111111111          111234567789999999999999999999999877643

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.82  E-value=5.4e-21  Score=189.85  Aligned_cols=171  Identities=18%  Similarity=0.238  Sum_probs=121.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus        84 ~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  161 (281)
T 3cc6_A           84 EEPTWIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSR  161 (281)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHH--TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGG
T ss_pred             CCCCEEEEecCCCCCHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCc
Confidence            34568999999999999999753  2358888888887776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......      .......||+.|+| |.  ...++.++|||||||+++||+| |+.||.......  .....      
T Consensus       162 ~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~--~~~~~------  227 (281)
T 3cc6_A          162 YIEDEDY------YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD--VIGVL------  227 (281)
T ss_dssp             CC---------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG--HHHHH------
T ss_pred             ccccccc------cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH--HHHHH------
Confidence            7654321      12234567889977 87  6778999999999999999999 999997532211  11111      


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                               ......+.+..          ....+.++...|++.+|++|||+.|+++.|+.+.+...
T Consensus       228 ---------~~~~~~~~~~~----------~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~  276 (281)
T 3cc6_A          228 ---------EKGDRLPKPDL----------CPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEK  276 (281)
T ss_dssp             ---------HHTCCCCCCTT----------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             ---------hcCCCCCCCCC----------CCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhhh
Confidence                     11110011100          11234467779999999999999999999999876543

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.82  E-value=1.3e-20  Score=191.34  Aligned_cols=163  Identities=17%  Similarity=0.193  Sum_probs=118.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC----Ceeec
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM----TAYVG  448 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~----~~kl~  448 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+|||++.++    .+||+
T Consensus        84 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~  160 (326)
T 2y0a_A           84 ENKTDVILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKII  160 (326)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHTTS---SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEEC
T ss_pred             EeCCEEEEEEEcCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEE
Confidence            3466789999999999999999753   358888888888877                  9999999887    79999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++.......        .....||+.|+| |.  ...++.++|||||||+++||+||+.||......         
T Consensus       161 Dfg~a~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---------  223 (326)
T 2y0a_A          161 DFGLAHKIDFGNE--------FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ---------  223 (326)
T ss_dssp             CCTTCEECCTTSC--------CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH---------
T ss_pred             ECCCCeECCCCCc--------cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH---------
Confidence            9999987754321        234679999977 87  567899999999999999999999999753211         


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              +.+............    .   ........+.++...|++.+|++|||+.|+++
T Consensus       224 --------~~~~~~~~~~~~~~~----~---~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          224 --------ETLANVSAVNYEFED----E---YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             --------HHHHHHHHTCCCCCH----H---HHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             --------HHHHHHHhcCCCcCc----c---ccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                    111111111100000    0   00011123445677999999999999999986

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.82  E-value=6.8e-21  Score=193.18  Aligned_cols=170  Identities=24%  Similarity=0.319  Sum_probs=115.6

Q ss_pred             eeEEecccCCCchhhhccCCC---CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          396 KALAFEFMPNGSLESWLHPNE---ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~---~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .++||||+++|+|.+++....   ....+++..+.+++.++                  |+||++++++.+||+|||+++
T Consensus       106 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~  185 (323)
T 3qup_A          106 PMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSR  185 (323)
T ss_dssp             EEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             cEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEeeccccc
Confidence            489999999999999996432   22358899988888877                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........     .......+++.|+| |.  ...++.++|||||||+++||+| |+.||......              
T Consensus       186 ~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--------------  246 (323)
T 3qup_A          186 KIYSGDYY-----RQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA--------------  246 (323)
T ss_dssp             --------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--------------
T ss_pred             cccccccc-----cccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH--------------
Confidence            76543321     12234567888977 76  6678999999999999999999 89999753221              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                         +.............+.          .....+.+++..|++.+|++|||+.|+++.|+++....
T Consensus       247 ---~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          247 ---EIYNYLIGGNRLKQPP----------ECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             ---GHHHHHHTTCCCCCCT----------TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             ---HHHHHHhcCCCCCCCC----------ccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence               1111111111111111          11123456778999999999999999999999987654

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.82  E-value=4.2e-21  Score=194.98  Aligned_cols=184  Identities=20%  Similarity=0.312  Sum_probs=127.2

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++|+|.+++...  ...+++..+.+++.++                  |+||+++.++.+||+|||+++.
T Consensus       117 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~  194 (326)
T 2w1i_A          117 RNLKLIMEYLPYGSLRDYLQKH--KERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKV  194 (326)
T ss_dssp             -CCEEEECCCTTCBHHHHHHHS--TTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             CceEEEEECCCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhh
Confidence            4678999999999999999754  2358898888887777                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC-
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES-  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~-  531 (614)
                      .......    ........|+..|+| |.  ...++.++|||||||+++||+||+.|+.....      .+........ 
T Consensus       195 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~------~~~~~~~~~~~  264 (326)
T 2w1i_A          195 LPQDKEY----YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFMRMIGNDKQ  264 (326)
T ss_dssp             CCSSCSE----EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH------HHHHHHCTTCC
T ss_pred             ccccccc----cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH------HHHHhhccccc
Confidence            7544221    011223457778966 87  56788999999999999999999999764211      1111111110 


Q ss_pred             ---hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          532 ---VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       532 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                         ....+...+.........  .       .....+.+++..|++.+|++|||+.||++.|+++++++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~  325 (326)
T 2w1i_A          265 GQMIVFHLIELLKNNGRLPRP--D-------GCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMA  325 (326)
T ss_dssp             THHHHHHHHHHHHTTCCCCCC--T-------TCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhhcCCCCCCC--C-------cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence               111122222222111100  0       112345567789999999999999999999999998764

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.82  E-value=4.4e-21  Score=192.56  Aligned_cols=180  Identities=22%  Similarity=0.346  Sum_probs=125.4

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+++.
T Consensus        98 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  175 (302)
T 4e5w_A           98 NGIKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKA  175 (302)
T ss_dssp             CCEEEEEECCTTCBHHHHHHHH--TTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             ceEEEEEEeCCCCcHHHHHHhc--cccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECccccccc
Confidence            5578999999999999999643  2358888888888877                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC--
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE--  530 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~--  530 (614)
                      .......    ........||..|+| |.  ...++.++||||+||+++||+||+.|+....      ..+.....+.  
T Consensus       176 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~  245 (302)
T 4e5w_A          176 IETDKEY----YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM------ALFLKMIGPTHG  245 (302)
T ss_dssp             CCTTCCE----EECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH------HHHHHHHCSCCG
T ss_pred             ccCCCcc----eeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh------hHHhhccCCccc
Confidence            7654321    112334678888976 86  6678899999999999999999999865321      1111111111  


Q ss_pred             -ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          531 -SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       531 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                       .....+...+.........  +       .....+.+++..|++.+|++|||+.|+++.|+.+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~--~-------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          246 QMTVTRLVNTLKEGKRLPCP--P-------NCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             GGHHHHHHHHHHTTCCCCCC--T-------TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHhccCCCCCC--C-------CCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence             1122222233222211110  1       11123456778999999999999999999998764

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.82  E-value=9.3e-21  Score=188.79  Aligned_cols=173  Identities=20%  Similarity=0.252  Sum_probs=126.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++.... ...+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        79 ~~~~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~  157 (288)
T 3kfa_A           79 TREPPFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGL  157 (288)
T ss_dssp             CSSSSEEEEEECCTTEEHHHHHHHCC-TTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCG
T ss_pred             ccCCCEEEEEEcCCCCcHHHHHHhcc-cCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCcc
Confidence            44567899999999999999997542 3458898888887776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......      .......||+.|+| |.  ...++.++||||+||+++||++ |+.||......  ....      
T Consensus       158 ~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~------  223 (288)
T 3kfa_A          158 SRLMTGDTY------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYE------  223 (288)
T ss_dssp             GGTSCSSSS------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHH------
T ss_pred             ceeccCCcc------ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHH------
Confidence            987654321      22334567888977 87  6778999999999999999999 99998753211  1111      


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                                .+.........  .       .....+.++...|++.+|++|||+.|+++.|+.+.+..
T Consensus       224 ----------~~~~~~~~~~~--~-------~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~  273 (288)
T 3kfa_A          224 ----------LLEKDYRMERP--E-------GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES  273 (288)
T ss_dssp             ----------HHHTTCCCCCC--T-------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ----------HHhccCCCCCC--C-------CCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence                      11111111000  0       11123446777999999999999999999999887654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.82  E-value=2.5e-20  Score=193.23  Aligned_cols=164  Identities=16%  Similarity=0.173  Sum_probs=119.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC--CCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY--DMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~--~~~~kl~Df  450 (614)
                      ..++..++|||||++|+|.+++...  ...+++..+..++.++                  |+|||++.  ++.+||+||
T Consensus       118 ~~~~~~~lv~E~~~gg~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DF  195 (387)
T 1kob_A          118 EDKYEMVLILEFLSGGELFDRIAAE--DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDF  195 (387)
T ss_dssp             ECSSEEEEEEECCCCCBHHHHTTCT--TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCC
T ss_pred             EeCCEEEEEEEcCCCCcHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEec
Confidence            3456789999999999999999753  2358898888888877                  99999984  477999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+++......        ......||+.|+| |.  ...++.++|||||||++|||+||+.||.....            
T Consensus       196 G~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~------------  255 (387)
T 1kob_A          196 GLATKLNPDE--------IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD------------  255 (387)
T ss_dssp             TTCEECCTTS--------CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH------------
T ss_pred             ccceecCCCc--------ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH------------
Confidence            9998775432        2334679999977 87  56789999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+.......+...+......       -..+.++...|++.+|++|||+.|+++
T Consensus       256 -----~~~~~~i~~~~~~~~~~~~~~~-------s~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          256 -----LETLQNVKRCDWEFDEDAFSSV-------SPEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             -----HHHHHHHHHCCCCCCSSTTTTS-------CHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             -----HHHHHHHHhCCCCCCccccccC-------CHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence                 1111111111111111111111       123446777999999999999999986

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.82  E-value=1e-20  Score=187.67  Aligned_cols=172  Identities=25%  Similarity=0.340  Sum_probs=124.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++.... ...+++..+.+++.++                  |+||++++++.+||+|||+++
T Consensus        79 ~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  157 (279)
T 1qpc_A           79 QEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (279)
T ss_dssp             SSSCEEEEECCTTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCcEEEEecCCCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccc
Confidence            345789999999999999997531 2358899888888877                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......      .......|++.|+| |.  ...++.++|||||||+++||+| |+.||......              
T Consensus       158 ~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--------------  217 (279)
T 1qpc_A          158 LIEDNEY------TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--------------  217 (279)
T ss_dssp             ECSSSCE------ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--------------
T ss_pred             cccCccc------ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--------------
Confidence            7754321      12233557888977 87  5778999999999999999999 89998753211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                         +... .+..........         .....+.++...|++.+|++|||+.++++.|+.+.....
T Consensus       218 ---~~~~-~~~~~~~~~~~~---------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~  272 (279)
T 1qpc_A          218 ---EVIQ-NLERGYRMVRPD---------NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATE  272 (279)
T ss_dssp             ---HHHH-HHHTTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred             ---HHHH-HHhcccCCCCcc---------cccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhcc
Confidence               1111 111111100000         111234467779999999999999999999998876543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1.5e-20  Score=205.30  Aligned_cols=191  Identities=22%  Similarity=0.292  Sum_probs=115.4

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCc
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK  115 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  115 (614)
                      .+..++++.+.+....+     +..++ +|+.|+|++|.+. .+| .+..+++|+.|+|++|++++..|  +..+++|+.
T Consensus        22 ~l~~l~l~~~~i~~~~~-----~~~L~-~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT-----QNELN-SIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC-----HHHHT-TCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHhccCCCcccccc-----hhcCC-CCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            44555566666554332     34555 6667777777765 333 46667777777777777765443  566666665


Q ss_pred             ccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCC
Q 046036          116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLS  195 (614)
Q Consensus       116 L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  195 (614)
                      |+            |++|.|++ ++ .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.|++.  ..+..++
T Consensus        92 L~------------Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~  153 (605)
T 1m9s_A           92 LF------------LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT  153 (605)
T ss_dssp             EE------------CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred             EE------------CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccC
Confidence            55            66666663 22 56666666666666666663 2 2355666666666666666643  4566666


Q ss_pred             CCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCccc
Q 046036          196 NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGT  258 (614)
Q Consensus       196 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  258 (614)
                      +|+.|+|++|.+++..|  +..+++|+.|+|++|.|++.  +.+..+++|+.|+|++|++++.
T Consensus       154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            66666666666665544  56666666666666666542  2456666666666666666543

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.82  E-value=2.1e-20  Score=191.49  Aligned_cols=164  Identities=18%  Similarity=0.176  Sum_probs=108.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC---CCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY---DMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~---~~~~kl~D  449 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+|||++.   ++.+||+|
T Consensus       118 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~D  194 (349)
T 2w4o_A          118 ETPTEISLVLELVTGGELFDRIVEK---GYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIAD  194 (349)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECC
T ss_pred             ecCCeEEEEEEeCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEcc
Confidence            3456789999999999999999754   358888888888777                  99999975   88999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||+++......        ......||++|+| |+  ...++.++|||||||++|||+||+.||.......         
T Consensus       195 fg~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---------  257 (349)
T 2w4o_A          195 FGLSKIVEHQV--------LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ---------  257 (349)
T ss_dssp             CC------------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH---------
T ss_pred             CccccccCccc--------ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH---------
Confidence            99998765432        1334679999977 87  5678999999999999999999999997532211         


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             ...................       +....+.++...|++.+|++|||+.|+++
T Consensus       258 -------~~~~~i~~~~~~~~~~~~~-------~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          258 -------FMFRRILNCEYYFISPWWD-------EVSLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             -------HHHHHHHTTCCCCCTTTTT-------TSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -------HHHHHHHhCCCccCCchhh-------hCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                   1111111111111000000       11123446777999999999999999986

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.82  E-value=2.2e-20  Score=192.25  Aligned_cols=163  Identities=20%  Similarity=0.236  Sum_probs=117.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC---Ceeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM---TAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~---~~kl~D  449 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.+.   .+||+|
T Consensus        98 ~~~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~D  174 (362)
T 2bdw_A           98 QEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLAD  174 (362)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHTTC---SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECC
T ss_pred             EeCCEEEEEEecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEee
Confidence            4567789999999999999999754   358888888887777                  9999998654   599999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||+++......        .....+||++|+| |.  ...++.++|||||||++|||+||+.||.....           
T Consensus       175 fG~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~-----------  235 (362)
T 2bdw_A          175 FGLAIEVNDSE--------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ-----------  235 (362)
T ss_dssp             CTTCBCCTTCC--------SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----------
T ss_pred             cCcceEecCCc--------ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----------
Confidence            99998765432        2334689999977 87  55789999999999999999999999975321           


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                            .+....................       ...+.++...|++.+|++||++.|+++
T Consensus       236 ------~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          236 ------HRLYAQIKAGAYDYPSPEWDTV-------TPEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             ------HHHHHHHHHTCCCCCTTGGGGS-------CHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ------HHHHHHHHhCCCCCCcccccCC-------CHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                  1111111122111111111111       123345677999999999999999885

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.82  E-value=2.3e-20  Score=189.96  Aligned_cols=160  Identities=19%  Similarity=0.241  Sum_probs=116.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        75 ~~~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~  151 (337)
T 1o6l_A           75 QTHDRLCFVMEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL  151 (337)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccc
Confidence            3456789999999999999999743   357888777777666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||+.|+| |.  ...++.++||||+||++|||++|+.||.....              
T Consensus       152 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--------------  210 (337)
T 1o6l_A          152 CKEGISDG-------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--------------  210 (337)
T ss_dssp             CBCSCCTT-------CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             hhhcccCC-------CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH--------------
Confidence            98643322       12445789999977 87  66789999999999999999999999975211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~  588 (614)
                         .+.....+..... .|.   ...    .   .+.++...|++.+|++||     ++.|+++
T Consensus       211 ---~~~~~~i~~~~~~-~p~---~~s----~---~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          211 ---ERLFELILMEEIR-FPR---TLS----P---EAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             ---HHHHHHHHHCCCC-CCT---TSC----H---HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             ---HHHHHHHHcCCCC-CCC---CCC----H---HHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence               1112222222111 111   111    1   233566689999999999     8888875

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.82  E-value=7.7e-21  Score=194.72  Aligned_cols=160  Identities=25%  Similarity=0.293  Sum_probs=113.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        94 ~~~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~  170 (353)
T 3txo_A           94 QTPDRLFFVMEFVNGGDLMFHIQKS---RRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGM  170 (353)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccc
Confidence            3466789999999999999999753   358888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||+.|+| |.  ...++.++||||+||++|||+||+.||.....              
T Consensus       171 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--------------  229 (353)
T 3txo_A          171 CKEGICNG-------VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE--------------  229 (353)
T ss_dssp             CBCSCC----------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             eeecccCC-------ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH--------------
Confidence            98643322       22445789999977 87  56789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCH------HHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGV------REMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm------~ev~~  588 (614)
                         .+.....+...... |..   ..    +   .+.++...|++.+|++||++      .|+++
T Consensus       230 ---~~~~~~i~~~~~~~-p~~---~~----~---~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          230 ---DDLFEAILNDEVVY-PTW---LH----E---DATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             ---HHHHHHHHHCCCCC-CTT---SC----H---HHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             ---HHHHHHHHcCCCCC-CCC---CC----H---HHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence               12222222222111 110   11    1   23356678999999999998      66664

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=190.40  Aligned_cols=190  Identities=20%  Similarity=0.190  Sum_probs=124.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee----CCCCCeeeccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL----DYDMTAYVGDF  450 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl----d~~~~~kl~Df  450 (614)
                      ....++||||+++|+|.+++........+++..+..++.++                  |+||++    +.++.+||+||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Df  160 (319)
T 4euu_A           81 TRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDF  160 (319)
T ss_dssp             TCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCC
T ss_pred             CceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccC
Confidence            34679999999999999999865434458999999888887                  999999    88888999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc----------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCc-
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW----------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL-  518 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~----------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~-  518 (614)
                      |+++.......        .....||+.|+| |.          ...++.++|||||||++|||+||+.||........ 
T Consensus       161 g~a~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~  232 (319)
T 4euu_A          161 GAARELEDDEQ--------FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN  232 (319)
T ss_dssp             TTCEECCTTCC--------BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGC
T ss_pred             CCceecCCCCc--------eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchh
Confidence            99987755422        334679999977 76          25788999999999999999999999975322111 


Q ss_pred             -hHHHHHHhhCCCChHHHHHHHHhcC--cCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          519 -SLHNFCEMALPESVMELVYSRLLQG--VDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       519 -~l~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                       ....-.....|......+......+  +............   ..-..+..+...|++.||++|||++|+++.....
T Consensus       233 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          233 KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSR---GLQVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             HHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCH---HHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccch---hHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence             1111111111110000000000000  0000001111112   2233345677799999999999999999988743

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.82  E-value=6.6e-21  Score=192.16  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=113.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||| +|+|.+++...  ...++|..+..|+.++                  |+|||++.++.+||+|||+
T Consensus       127 ~~~~~~~lv~e~~-~~~L~~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~  203 (311)
T 3p1a_A          127 EEGGILYLQTELC-GPSLQQHCEAW--GASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGL  203 (311)
T ss_dssp             EETTEEEEEEECC-CCBHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTT
T ss_pred             EeCCEEEEEEecc-CCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEcccee
Confidence            3466789999999 66999998753  2359999999988887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ++......        ......||++|+| |+ .+.++.++|||||||++|||++|+.|+.....    ......    .
T Consensus       204 a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~----~~~~~~----~  267 (311)
T 3p1a_A          204 LVELGTAG--------AGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGEG----WQQLRQ----G  267 (311)
T ss_dssp             CEECC--------------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHHH----HHHHTT----T
T ss_pred             eeecccCC--------CCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCccH----HHHHhc----c
Confidence            98765432        2334679999977 87 66899999999999999999999777643110    000000    0


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....    .+.                 ......+.++...|++.+|++|||++|+++
T Consensus       268 ~~~~----~~~-----------------~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          268 YLPP----EFT-----------------AGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             CCCH----HHH-----------------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCCc----ccc-----------------cCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence            0000    000                 011223456777999999999999999985

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.82  E-value=1.6e-20  Score=189.27  Aligned_cols=176  Identities=18%  Similarity=0.194  Sum_probs=114.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      .++..++||||+++|+|.+++.... ....+++..+.+++.++                  |+||+++.++.+||+|||+
T Consensus       103 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~  182 (310)
T 2wqm_A          103 EDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL  182 (310)
T ss_dssp             ETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC--
T ss_pred             cCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccc
Confidence            3567899999999999999986421 23458888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......||+.|+| |.  ...++.++|||||||+++||++|+.||.......            
T Consensus       183 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~------------  243 (310)
T 2wqm_A          183 GRFFSSKTT-------AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL------------  243 (310)
T ss_dssp             -----------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCH------------
T ss_pred             eeeecCCCc-------cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhH------------
Confidence            987654321       2334678999977 87  6678999999999999999999999997532111            


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                         .+.............+.  ..       ....+.++...|++.+|++|||+.||++.|++++....
T Consensus       244 ---~~~~~~~~~~~~~~~~~--~~-------~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~  300 (310)
T 2wqm_A          244 ---YSLCKKIEQCDYPPLPS--DH-------YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA  300 (310)
T ss_dssp             ---HHHHHHHHTTCSCCCCT--TT-------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHhhcccCCCCcc--cc-------cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence               11111111111111000  00       11234467779999999999999999999999987643

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.82  E-value=6.9e-21  Score=188.75  Aligned_cols=167  Identities=25%  Similarity=0.307  Sum_probs=115.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++.... ...+++..+.+++.++                  |+||+++.++.+||+|||+++
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  165 (278)
T 1byg_A           87 KGGLYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK  165 (278)
T ss_dssp             --CCEEEECCCTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             CCceEEEEecCCCCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccc
Confidence            446799999999999999997532 2247888888877776                  999999999999999999997


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .....          .....+++.|+| |.  ...++.++||||||++++||+| |+.||......  ..          
T Consensus       166 ~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~----------  223 (278)
T 1byg_A          166 EASST----------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DV----------  223 (278)
T ss_dssp             --------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GH----------
T ss_pred             ccccc----------ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HH----------
Confidence            65432          123467888977 87  6678999999999999999999 99998753211  11          


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                           . ..+..........         .....+.++...|++.+|++|||+.|+++.|++++...
T Consensus       224 -----~-~~~~~~~~~~~~~---------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~  275 (278)
T 1byg_A          224 -----V-PRVEKGYKMDAPD---------GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE  275 (278)
T ss_dssp             -----H-HHHTTTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             -----H-HHHhcCCCCCCcc---------cCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence                 1 1111111111000         11123445677999999999999999999999998754

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.82  E-value=2.7e-20  Score=185.38  Aligned_cols=162  Identities=23%  Similarity=0.351  Sum_probs=115.8

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeCCCCC-----eeeccc
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLDYDMT-----AYVGDF  450 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld~~~~-----~kl~Df  450 (614)
                      .++||||+++|+|.+++...  ...++|..+..++.++                    |+||+++.++.     +||+||
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Df  173 (287)
T 4f0f_A           96 PRMVMEFVPCGDLYHRLLDK--AHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADF  173 (287)
T ss_dssp             TEEEEECCTTCBHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCC
T ss_pred             CeEEEEecCCCCHHHHHhcc--cCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCC
Confidence            37999999999999998754  3468888888877665                    89999988776     999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |+++.....          .....||+.|+| |.    ...++.++||||+||++|||++|+.||...........    
T Consensus       174 g~~~~~~~~----------~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~----  239 (287)
T 4f0f_A          174 GLSQQSVHS----------VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFI----  239 (287)
T ss_dssp             TTCBCCSSC----------EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHH----
T ss_pred             Ccccccccc----------ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHH----
Confidence            999754332          334679999976 86    34568899999999999999999999975332211111    


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                                 .............  .       .....+.++...|++.+|++|||+.|+++.|+++
T Consensus       240 -----------~~~~~~~~~~~~~--~-------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          240 -----------NMIREEGLRPTIP--E-------DCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             -----------HHHHHSCCCCCCC--T-------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             -----------HHHhccCCCCCCC--c-------ccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence                       1111111111000  0       1112344677799999999999999999999753

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.82  E-value=2.4e-20  Score=186.72  Aligned_cols=179  Identities=22%  Similarity=0.307  Sum_probs=125.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++||||+.+|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus        95 ~~~~~~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  172 (298)
T 3pls_A           95 EGLPHVLLPYMCHGDLLQFIRSP--QRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLAR  172 (298)
T ss_dssp             SSCCEEEECCCTTCBHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSC
T ss_pred             CCCcEEEEecccCCCHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcc
Confidence            33458999999999999999763  3457888888887776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ........   .........||+.|+| |.  ...++.++|||||||+++||+||..|+..... ...+.....      
T Consensus       173 ~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~-~~~~~~~~~------  242 (298)
T 3pls_A          173 DILDREYY---SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID-PFDLTHFLA------  242 (298)
T ss_dssp             TTTTGGGG---CSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC-GGGHHHHHH------
T ss_pred             cccCCccc---ccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCC-HHHHHHHhh------
Confidence            66433210   0112334678899977 77  66789999999999999999996666433211 111111111      


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcccc
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVRI  602 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~~~  602 (614)
                               .......+..          ....+.++...|++.+|++|||+.|+++.|+++...+.+...
T Consensus       243 ---------~~~~~~~~~~----------~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~~~  294 (298)
T 3pls_A          243 ---------QGRRLPQPEY----------CPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGDHY  294 (298)
T ss_dssp             ---------TTCCCCCCTT----------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSCCB
T ss_pred             ---------cCCCCCCCcc----------chHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhccch
Confidence                     1110011110          112344677799999999999999999999999888766543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.82  E-value=1e-20  Score=188.81  Aligned_cols=175  Identities=18%  Similarity=0.250  Sum_probs=124.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  165 (291)
T 1xbb_A           89 AESWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSK  165 (291)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHhC---cCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence            45678999999999999999753   358888888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........    ........|++.|+| |.  ...++.++|||||||+++||+| |+.||......  .+          
T Consensus       166 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~----------  229 (291)
T 1xbb_A          166 ALRADENY----YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EV----------  229 (291)
T ss_dssp             ECCTTCSE----EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HH----------
T ss_pred             eeccCCCc----ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HH----------
Confidence            76543221    111223456788977 87  5678899999999999999999 99999753211  11          


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhccc
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGVR  601 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~~  601 (614)
                            ...+........  ..       .....+.+++..|++.+|++||++.||++.|+.+-....+.+
T Consensus       230 ------~~~~~~~~~~~~--~~-------~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~~  285 (291)
T 1xbb_A          230 ------TAMLEKGERMGC--PA-------GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNEG  285 (291)
T ss_dssp             ------HHHHHTTCCCCC--CT-------TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHcCCCCCC--CC-------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhhcc
Confidence                  111111110000  00       111234467789999999999999999999999876655443

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.82  E-value=8.6e-21  Score=192.70  Aligned_cols=168  Identities=23%  Similarity=0.301  Sum_probs=116.3

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++|+|.+++...  ...+++..+..++.++                  |+|||++.++.+||+|||+++.
T Consensus        89 ~~~~~v~~~~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~  166 (327)
T 3lzb_A           89 STVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             SSEEEEECCCSSCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC---
T ss_pred             CCceEEEEecCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeE
Confidence            3478999999999999999764  2358888888888777                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......     .......||+.|+| |.  ...++.++|||||||++|||+| |+.||.......  +..         
T Consensus       167 ~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~---------  230 (327)
T 3lzb_A          167 LGAEEKE-----YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISS---------  230 (327)
T ss_dssp             ------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHH---------
T ss_pred             ccCcccc-----ccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHH---------
Confidence            6543321     22334567888977 77  6778999999999999999999 999997532211  111         


Q ss_pred             hHHHHHHHHhcCc-CCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          532 VMELVYSRLLQGV-DKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       532 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                             .+.... .+.+.   .       ....+.+++..|++.+|++||++.|+++.|+++...
T Consensus       231 -------~~~~~~~~~~~~---~-------~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          231 -------ILEKGERLPQPP---I-------CTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             -------HHHTTCCCCCCT---T-------BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             -------HHHcCCCCCCCc---c-------CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence                   111111 01111   0       111344677799999999999999999999988744

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.82  E-value=1.1e-20  Score=187.77  Aligned_cols=163  Identities=23%  Similarity=0.362  Sum_probs=121.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||+++|+|.+++.... ...+++..+..++.++                  |+||++++++.+||+|||+++
T Consensus        92 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  170 (284)
T 2a19_B           92 TKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVT  170 (284)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             cceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECcchhhe
Confidence            456799999999999999997532 3468898888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......        .....||+.|+| |.  ...++.++|||||||+++||+||..|+....                 
T Consensus       171 ~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-----------------  225 (284)
T 2a19_B          171 SLKNDGK--------RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS-----------------  225 (284)
T ss_dssp             ESSCCSC--------CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH-----------------
T ss_pred             ecccccc--------ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH-----------------
Confidence            7654321        234579999977 87  6678999999999999999999998864210                 


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                        +... .+.......     ..    ..   .+.++...|++.+|++|||+.|+++.|..++..
T Consensus       226 --~~~~-~~~~~~~~~-----~~----~~---~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~  275 (284)
T 2a19_B          226 --KFFT-DLRDGIISD-----IF----DK---KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS  275 (284)
T ss_dssp             --HHHH-HHHTTCCCT-----TS----CH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred             --HHHH-Hhhcccccc-----cC----CH---HHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence              0011 111110000     00    11   233566799999999999999999999887644

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.82  E-value=1.1e-20  Score=190.58  Aligned_cols=186  Identities=20%  Similarity=0.202  Sum_probs=119.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++ +|.+++...  ...+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus        89 ~~~~~~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  165 (311)
T 3niz_A           89 HSERCLTLVFEFMEK-DLKKVLDEN--KTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGL  165 (311)
T ss_dssp             CCSSCEEEEEECCSE-EHHHHHHTC--TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ccCCEEEEEEcCCCC-CHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcC
Confidence            456678999999995 888888754  2358888888877777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh-
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA-  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~-  527 (614)
                      ++.......       ......||+.|+| |.   ...++.++||||+||+++||+||+.||........ +....... 
T Consensus       166 a~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~  237 (311)
T 3niz_A          166 ARAFGIPVR-------SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQ-LPKIFSILG  237 (311)
T ss_dssp             CEETTSCCC----------CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTH-HHHHHHHHC
T ss_pred             ceecCCCcc-------cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHHC
Confidence            987654321       2344678999977 86   35689999999999999999999999976433221 22211111 


Q ss_pred             --CCCChHHHHH-HHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 --LPESVMELVY-SRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 --~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                        .+.......+ +.+........ ....+..........+.++...|++.||++|||++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          238 TPNPREWPQVQELPLWKQRTFQVF-EKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             CCCTTTSGGGTTSHHHHSCCCCCC-CCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CCChHHhhhhhccchhhhcccccc-cCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence              1111110000 00000000000 000011111111234456778999999999999999985

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.82  E-value=1.8e-20  Score=193.24  Aligned_cols=162  Identities=21%  Similarity=0.262  Sum_probs=116.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..|+|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus       109 ~~~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~  185 (373)
T 2r5t_A          109 QTADKLYFVLDYINGGELFYHLQRE---RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGL  185 (373)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCB
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCcc
Confidence            3467789999999999999999753   347777777776666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||+.|+| |.  ...++.++|||||||++|||++|+.||.....              
T Consensus       186 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--------------  244 (373)
T 2r5t_A          186 CKENIEHN-------STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT--------------  244 (373)
T ss_dssp             CGGGBCCC-------CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH--------------
T ss_pred             ccccccCC-------CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH--------------
Confidence            98643322       12445789999977 87  66789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                         .+.....+.......+    ...    .   .+.++...|++.+|++||++.+.+..+
T Consensus       245 ---~~~~~~i~~~~~~~~~----~~~----~---~~~~li~~lL~~dp~~R~~~~~~~~~i  291 (373)
T 2r5t_A          245 ---AEMYDNILNKPLQLKP----NIT----N---SARHLLEGLLQKDRTKRLGAKDDFMEI  291 (373)
T ss_dssp             ---HHHHHHHHHSCCCCCS----SSC----H---HHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred             ---HHHHHHHHhcccCCCC----CCC----H---HHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence               1222222322221111    111    1   233466689999999999986544433

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.82  E-value=2.5e-20  Score=189.33  Aligned_cols=165  Identities=17%  Similarity=0.172  Sum_probs=115.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC---CCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY---DMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~---~~~~kl~D  449 (614)
                      ...+..++||||+++|+|.+++... ....+++..+..++.++                  |+||+++.   ++.+||+|
T Consensus        99 ~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~D  177 (327)
T 3lm5_A           99 ENTSEIILILEYAAGGEIFSLCLPE-LAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVD  177 (327)
T ss_dssp             ECSSEEEEEEECCTTEEGGGGGSSC-C-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECC
T ss_pred             EeCCeEEEEEEecCCCcHHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEee
Confidence            4566789999999999999999754 23468999888888877                  99999998   78999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||+++......        ......||+.|+| |.  ...++.++||||+||+++||+||+.||......          
T Consensus       178 fg~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~----------  239 (327)
T 3lm5_A          178 FGMSRKIGHAC--------ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ----------  239 (327)
T ss_dssp             GGGCEEC-----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH----------
T ss_pred             CccccccCCcc--------ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch----------
Confidence            99998765432        1334679999977 87  677899999999999999999999999753211          


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             +...................       ....+.++...|++.+|++|||++|+++
T Consensus       240 -------~~~~~i~~~~~~~~~~~~~~-------~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          240 -------ETYLNISQVNVDYSEETFSS-------VSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             -------HHHHHHHHTCCCCCTTTTTT-------SCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             -------HHHHHHHhcccccCchhhcc-------cCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence                   11111111111111111011       1123445677999999999999999975

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.81  E-value=2.7e-20  Score=190.58  Aligned_cols=112  Identities=21%  Similarity=0.322  Sum_probs=93.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++.....++.++                  |+|||+|.++.+||+|||+
T Consensus        91 ~~~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~  167 (353)
T 2i0e_A           91 QTMDRLYFVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM  167 (353)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCc
Confidence            3456789999999999999999753   358888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |.  ...++.++||||+||++|||++|+.||..
T Consensus       168 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~  223 (353)
T 2i0e_A          168 CKENIWDG-------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG  223 (353)
T ss_dssp             CBCCCCTT-------CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ccccccCC-------cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCC
Confidence            98643322       12345789999977 87  66789999999999999999999999975

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.81  E-value=5e-21  Score=207.37  Aligned_cols=166  Identities=26%  Similarity=0.355  Sum_probs=122.1

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++|||||++|+|.++|+... ...+++..+.+|+.++                  |+|||+++++.+||+|||+++.
T Consensus       334 ~~~~lv~e~~~~gsL~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  412 (535)
T 2h8h_A          334 EPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARL  412 (535)
T ss_dssp             SSCEEEECCCTTEEHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTT
T ss_pred             ccceEeeehhcCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEccccccee
Confidence            56799999999999999997431 2358898888888877                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ......      .......++..|+| |.  ...++.++|||||||++|||+| |+.||.....                
T Consensus       413 ~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~----------------  470 (535)
T 2h8h_A          413 IEDNEY------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----------------  470 (535)
T ss_dssp             CCCHHH------HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH----------------
T ss_pred             cCCCce------ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----------------
Confidence            653211      11223457788977 87  6789999999999999999999 9999975321                


Q ss_pred             hHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          532 VMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       532 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                       .++++. +..... ..+.          .+...+.+++..||+.+|++|||+.+|++.|+.+.
T Consensus       471 -~~~~~~-i~~~~~~~~~~----------~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~  522 (535)
T 2h8h_A          471 -REVLDQ-VERGYRMPCPP----------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  522 (535)
T ss_dssp             -HHHHHH-HHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred             -HHHHHH-HHcCCCCCCCC----------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence             111111 111111 1111          11223456778999999999999999999998764

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.81  E-value=1.3e-20  Score=192.26  Aligned_cols=159  Identities=22%  Similarity=0.340  Sum_probs=115.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus        88 ~~~~~~~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~  164 (345)
T 1xjd_A           88 QTKENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGM  164 (345)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChh
Confidence            3466789999999999999999753   358888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||+.|+| |.  ...++.++||||+||++|||++|+.||.....              
T Consensus       165 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--------------  223 (345)
T 1xjd_A          165 CKENMLGD-------AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE--------------  223 (345)
T ss_dssp             CBCCCCTT-------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             hhhcccCC-------CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH--------------
Confidence            98654322       12445789999977 87  66789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHH-HHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVR-EMV  587 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~-ev~  587 (614)
                         .+.......... ..|.   ...       ..+.++...|++.+|++||++. |+.
T Consensus       224 ---~~~~~~i~~~~~-~~p~---~~s-------~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          224 ---EELFHSIRMDNP-FYPR---WLE-------KEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             ---HHHHHHHHHCCC-CCCT---TSC-------HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             ---HHHHHHHHhCCC-CCCc---ccC-------HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence               111111111111 0110   011       1233566789999999999987 554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=3.1e-19  Score=171.26  Aligned_cols=132  Identities=22%  Similarity=0.224  Sum_probs=69.2

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +|++|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|+.|+            |++|+|++..+..|
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~------------Ls~N~l~~l~~~~~  108 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD------------LGTNQLTVLPSAVF  108 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE------------CCSSCCCCCCTTTT
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE------------CCCCcCCccChhHh
Confidence            455555555555544444455555555555555555433334445555555444            55555554444445


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCC
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS  208 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  208 (614)
                      ..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|.+.
T Consensus       109 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            55555555555555555 44555555555555555555555444444555555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=1.3e-19  Score=173.83  Aligned_cols=154  Identities=17%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             eEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCcc
Q 046036          127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHM  206 (614)
Q Consensus       127 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~  206 (614)
                      .++.++++++ .+|..+.  ++|++|+|++|+|++..|..+..+++|++|+|++|.|+...+..|..+++|+.|+|++|.
T Consensus        23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            3446666665 3443332  667777777777776666666677777777777777765555556777777777777777


Q ss_pred             CCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCC
Q 046036          207 LSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       207 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      +++..+..|..+++|+.|+|++|.|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|++++|++++..+
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            77666666777777888888888887 677778888999999999999997777788889999999999999987765

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.81  E-value=8.8e-21  Score=192.23  Aligned_cols=173  Identities=18%  Similarity=0.252  Sum_probs=123.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------CCcccCHHHHHHHHhhC------------------CCceeeCCCCCe
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTA  445 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~  445 (614)
                      ..++..++||||+++|+|.+++....       ....+++..+.+++.++                  |+||+++.++.+
T Consensus        98 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~  177 (322)
T 1p4o_A           98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTV  177 (322)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCE
T ss_pred             ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeE
Confidence            34567899999999999999997432       11356888888887777                  999999999999


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHH
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLH  521 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~  521 (614)
                      ||+|||+++........     .......||+.|+| |.  ...++.++|||||||+++||+| |+.||.....      
T Consensus       178 kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~------  246 (322)
T 1p4o_A          178 KIGDFGMTRDIYETDYY-----RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN------  246 (322)
T ss_dssp             EECCTTCCCGGGGGGCE-----EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH------
T ss_pred             EECcCcccccccccccc-----ccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH------
Confidence            99999999866443211     12233567889977 87  6678999999999999999999 8889865321      


Q ss_pred             HHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          522 NFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                                 .+.............+.          .....+.++...|++.+|++|||+.|+++.|+++..
T Consensus       247 -----------~~~~~~~~~~~~~~~~~----------~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          247 -----------EQVLRFVMEGGLLDKPD----------NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             -----------HHHHHHHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             -----------HHHHHHHHcCCcCCCCC----------CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence                       11111111111111111          111234457779999999999999999999987643

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.81  E-value=3.1e-20  Score=186.00  Aligned_cols=159  Identities=19%  Similarity=0.227  Sum_probs=113.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++..    ..+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus       110 ~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~  185 (298)
T 2zv2_A          110 EDHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSN  185 (298)
T ss_dssp             SSEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CCEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCCEEEecCCCcc
Confidence            5678999999999999997653    358888888887777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-c-CC---CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V-AR---YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~-~~---~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      .......       ......||+.|+| |. . ..   .+.++|||||||++|||++|+.||.....             
T Consensus       186 ~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-------------  245 (298)
T 2zv2_A          186 EFKGSDA-------LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERI-------------  245 (298)
T ss_dssp             ECSSSSC-------EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSH-------------
T ss_pred             ccccccc-------cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccH-------------
Confidence            7654321       2334679999977 87 2 22   47889999999999999999999975211             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          ............. .+. .+..       ...+.++...|++.+|++|||+.|+++
T Consensus       246 ----~~~~~~~~~~~~~-~~~-~~~~-------~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          246 ----MCLHSKIKSQALE-FPD-QPDI-------AEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             ----HHHHHHHHHCCCC-CCS-SSCC-------CHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ----HHHHHHHhcccCC-CCC-cccc-------CHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence                1111111111111 010 0111       123446777999999999999999874

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.81  E-value=2.2e-20  Score=189.74  Aligned_cols=172  Identities=24%  Similarity=0.327  Sum_probs=123.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceeeC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLLD  440 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILld  440 (614)
                      .++..++||||+++|+|.+++....             ....+++..+..++.++                  |+||+++
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~  176 (327)
T 1fvr_A           97 HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVG  176 (327)
T ss_dssp             ETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC
T ss_pred             eCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEc
Confidence            4567899999999999999997642             12468999988888877                  9999999


Q ss_pred             CCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccccc
Q 046036          441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFAD  516 (614)
Q Consensus       441 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~  516 (614)
                      .++.+||+|||+++......        ......+++.|+| |.  ...++.++|||||||+++||+| |+.||..... 
T Consensus       177 ~~~~~kL~Dfg~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-  247 (327)
T 1fvr_A          177 ENYVAKIADFGLSRGQEVYV--------KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-  247 (327)
T ss_dssp             GGGCEEECCTTCEESSCEEC--------CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-
T ss_pred             CCCeEEEcccCcCccccccc--------cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH-
Confidence            99999999999997543221        1233567888977 87  5678999999999999999998 9999975321 


Q ss_pred             CchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          517 CLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       517 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                                      .+.. ..+........  ....       ...+.++...|++.+|++|||+.|+++.|+.+.+.
T Consensus       248 ----------------~~~~-~~~~~~~~~~~--~~~~-------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  301 (327)
T 1fvr_A          248 ----------------AELY-EKLPQGYRLEK--PLNC-------DDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  301 (327)
T ss_dssp             ----------------HHHH-HHGGGTCCCCC--CTTB-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ----------------HHHH-HHhhcCCCCCC--CCCC-------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence                            1111 11111111110  0111       12344677799999999999999999999988765


Q ss_pred             hh
Q 046036          597 LL  598 (614)
Q Consensus       597 ~~  598 (614)
                      ..
T Consensus       302 ~~  303 (327)
T 1fvr_A          302 RK  303 (327)
T ss_dssp             SS
T ss_pred             hc
Confidence            43

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=1.7e-22  Score=222.63  Aligned_cols=216  Identities=12%  Similarity=0.086  Sum_probs=117.4

Q ss_pred             cCCCCCCeeeecCCccccc----CCcCCCCCCCCcEEecccccCcccCCcChhh-hccccccccEEEccCCcccccCCCC
Q 046036            8 GNLFRLQNLNFGNSTVQGE----IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDS-FTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      .++++|++|+|++|.+++.    ++..+..+++|++|+|++|.+++..+..+.. +.+++ +|++|+|++|.+.+ +|..
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~~~  238 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LVGF  238 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HHHH
Confidence            3577888888888877655    2233456778888888888776332222221 34555 78888888887764 5556


Q ss_pred             CcCCCCCCEEeccCCcCc---ccCCccccCCCCCCccccc-------cccc----ccceEecCCCccccccc-hhhhccC
Q 046036           83 IPKYFNLIQLGLDRNCLA---GSIPFSIGKLQNLQKLNPL-------ATSL----YSFQLNLAENNLTGNIP-ESLENLT  147 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~---~~~p~~~~~l~~L~~L~l~-------~~~~----~l~~L~L~~N~l~~~~~-~~~~~l~  147 (614)
                      +..+++|++|+++.+...   +..+..+..+++|+.|++.       +..+    ++++|+|++|.+++... ..+..++
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            666777777777643222   2233455556666666541       1111    56777788777664333 3356667


Q ss_pred             CCCeeecccccCC-CCCCCCCCCCCCCCEEEcC-----------CCCCccCCc-ccccCCCCCceeccCCccCCCCcccc
Q 046036          148 SLQILNLSCNHLG-GSIPKPSGLFSTLSSIDFA-----------HNNFNGSLP-LEVGSLSNTQELDFSEHMLSDEIPIT  214 (614)
Q Consensus       148 ~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls-----------~N~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~  214 (614)
                      +|++|+++ |.+. +.++.....+++|++|+++           .|.+++... ..+..+++|++|+++.|.+++..+..
T Consensus       319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~  397 (592)
T 3ogk_B          319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES  397 (592)
T ss_dssp             TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred             CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence            77777666 3322 1122222334555555555           234432211 11233455555555555554443333


Q ss_pred             ccC-cccchHHhc
Q 046036          215 LGN-RSKFEHLLL  226 (614)
Q Consensus       215 ~~~-l~~L~~L~L  226 (614)
                      +.. +++|+.|++
T Consensus       398 l~~~~~~L~~L~l  410 (592)
T 3ogk_B          398 IGTYLKNLCDFRL  410 (592)
T ss_dssp             HHHHCCSCCEEEE
T ss_pred             HHhhCCCCcEEEE
Confidence            333 444555555

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.81  E-value=2.2e-20  Score=193.67  Aligned_cols=113  Identities=21%  Similarity=0.306  Sum_probs=94.6

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||+|.++.+||+|||
T Consensus       122 ~~~~~~~~lV~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG  198 (396)
T 4dc2_A          122 FQTESRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYG  198 (396)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             EEECCEEEEEEEcCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecc
Confidence            34567789999999999999999753   358888888887777                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++......       ......+||+.|+| |.  ...++.++||||+||++|||++|+.||..
T Consensus       199 la~~~~~~~-------~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~  255 (396)
T 4dc2_A          199 MCKEGLRPG-------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  255 (396)
T ss_dssp             TCBCCCCTT-------CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred             eeeecccCC-------CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence            998643222       22445789999977 87  66789999999999999999999999964

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.81  E-value=2.2e-20  Score=209.12  Aligned_cols=223  Identities=24%  Similarity=0.215  Sum_probs=126.5

Q ss_pred             CCCcEEecccccCcccCCcChhhhcccc-ccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCC
Q 046036           35 SKLTYLSLFSNNLHGIIPPSLDSFTNLS-TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNL  113 (614)
Q Consensus        35 ~~L~~L~L~~N~l~~~~p~~~~~~~~l~-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  113 (614)
                      +.++.|+|.+|.+.. .|..+-....|. .++..++++.|.+. ..|..+..+.+|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            456777777777764 333311111111 02333445556555 56788999999999999999998 778778899999


Q ss_pred             CcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccC
Q 046036          114 QKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGS  193 (614)
Q Consensus       114 ~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  193 (614)
                      ++|+            |++|.|+ .+|..|.+|++|++|+|++|.|+ .+|..++.+++|++|+|++|.|+ .+|..|+.
T Consensus       250 ~~L~------------Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~  314 (727)
T 4b8c_D          250 TRLY------------LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN  314 (727)
T ss_dssp             SCCB------------CTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS
T ss_pred             CEEE------------eeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence            9988            9999999 88899999999999999999999 78999999999999999999998 77888999


Q ss_pred             CCCCceeccCCccCCCCccccccCccc-chHHhccCccccccCCccccCCCccceEEccCC--------cCcccCCcccC
Q 046036          194 LSNTQELDFSEHMLSDEIPITLGNRSK-FEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHN--------NLSGTIPKELE  264 (614)
Q Consensus       194 l~~L~~L~ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~  264 (614)
                      +++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|..      |..|++++|        .|.+..+..+.
T Consensus       315 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~  388 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLAT  388 (727)
T ss_dssp             CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------
T ss_pred             CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhh
Confidence            999999999999999998888866533 345889999999888864      455667766        44444444555


Q ss_pred             CCCCCCEEECcCCcCcc
Q 046036          265 TLPFLENLNLSFNNFEG  281 (614)
Q Consensus       265 ~l~~L~~L~ls~N~l~~  281 (614)
                      .+..+....+++|-+.+
T Consensus       389 ~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          389 DLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             -------------CCCG
T ss_pred             cccccceeeeecccccc
Confidence            66666777777777654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.81  E-value=2.5e-20  Score=191.23  Aligned_cols=165  Identities=20%  Similarity=0.196  Sum_probs=117.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCC---eeecc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT---AYVGD  449 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~---~kl~D  449 (614)
                      .++..++|||||++|+|.+++.... ....+++..+..++.++                  |+|||++.++.   +||+|
T Consensus        97 ~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~D  176 (351)
T 3c0i_A           97 SDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGG  176 (351)
T ss_dssp             ETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECC
T ss_pred             eCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEec
Confidence            4567899999999999998886432 23357888887777776                  99999987654   99999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||+++......       ......+||+.|+| |.  ...++.++||||+||++|||+||+.||.....           
T Consensus       177 fg~a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----------  238 (351)
T 3c0i_A          177 FGVAIQLGESG-------LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE-----------  238 (351)
T ss_dssp             CTTCEECCTTS-------CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH-----------
T ss_pred             CcceeEecCCC-------eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH-----------
Confidence            99998775432       12334689999977 87  56789999999999999999999999975211           


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             +.............+..       .......+.++...|++.+|++|||+.|+++
T Consensus       239 -------~~~~~i~~~~~~~~~~~-------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          239 -------RLFEGIIKGKYKMNPRQ-------WSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             -------HHHHHHHHTCCCCCHHH-------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -------HHHHHHHcCCCCCCccc-------cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                   11111111111111000       0011223446777999999999999999985

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.81  E-value=1.2e-20  Score=190.01  Aligned_cols=180  Identities=19%  Similarity=0.195  Sum_probs=119.0

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++||||++ |+|.+++.... ...+++..+..++.++                  |+||+++.++.+||+|||+++..
T Consensus        93 ~~~lv~e~~~-~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~  170 (308)
T 3g33_A           93 KVTLVFEHVD-QDLRTYLDKAP-PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIY  170 (308)
T ss_dssp             EEEEEEECCC-CBHHHHHHTCC-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSCTTTS
T ss_pred             eEEEEehhhh-cCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCcccccc
Confidence            4789999998 59999998653 3348999998888887                  99999999999999999999876


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh-CCC--
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA-LPE--  530 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~-~~~--  530 (614)
                      ....        ......||+.|+| |.  ...++.++||||+||+++||++|+.||....... .+....... .+.  
T Consensus       171 ~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~  241 (308)
T 3g33_A          171 SYQM--------ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLIGLPPED  241 (308)
T ss_dssp             TTCC--------CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHH-HHHHHHHHHCCCCTT
T ss_pred             CCCc--------ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCChh
Confidence            5432        2345789999977 87  6788999999999999999999999997532211 111111110 000  


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....... .......  +...........+....+.++...|++.+|++|||+.|+++
T Consensus       242 ~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          242 DWPRDVS-LPRGAFP--PRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             TSCSSCS-SCGGGSC--CCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hccchhh-ccccccC--CCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence            0000000 0000000  00000001111112234456778999999999999999885

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.81  E-value=2.4e-20  Score=189.52  Aligned_cols=175  Identities=22%  Similarity=0.283  Sum_probs=123.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC----CCcccCHHHHHHHHhhC------------------CCceeeCC---CCCe
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE----ATRRLDLAEGLKIAVDI------------------PSNVLLDY---DMTA  445 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~----~~~~l~~~~~~~ia~~i------------------~~NILld~---~~~~  445 (614)
                      ..++..++||||+++|+|.+++....    ....+++..+..++.++                  |+||+++.   +..+
T Consensus       103 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~  182 (327)
T 2yfx_A          103 LQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVA  182 (327)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCE
T ss_pred             cCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceE
Confidence            34566799999999999999997543    12458888888888777                  99999994   4569


Q ss_pred             eecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHH
Q 046036          446 YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLH  521 (614)
Q Consensus       446 kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~  521 (614)
                      ||+|||+++........     .......||+.|+| |.  ...++.++|||||||+++||+| |+.||.....      
T Consensus       183 kl~Dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~------  251 (327)
T 2yfx_A          183 KIGDFGMARDIYRASYY-----RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN------  251 (327)
T ss_dssp             EECCCHHHHHHHC-----------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH------
T ss_pred             EECcccccccccccccc-----ccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH------
Confidence            99999999865433211     12334678999977 87  6778999999999999999999 9999865321      


Q ss_pred             HHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          522 NFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                                 .+......... ...+..         .....+.++...|++.+|++||++.|+++.|+.+....
T Consensus       252 -----------~~~~~~~~~~~-~~~~~~---------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          252 -----------QEVLEFVTSGG-RMDPPK---------NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             -----------HHHHHHHHTTC-CCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             -----------HHHHHHHhcCC-CCCCCC---------CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence                       11111111111 111110         11123446778999999999999999999999887654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.81  E-value=2.2e-20  Score=196.35  Aligned_cols=115  Identities=23%  Similarity=0.302  Sum_probs=95.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.+++...  ...+++.....++.++                  |+|||+|.++.+||+|||
T Consensus       143 ~~~~~~~~lV~Ey~~gg~L~~~l~~~--~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFG  220 (437)
T 4aw2_A          143 FQDDNNLYLVMDYYVGGDLLTLLSKF--EDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFG  220 (437)
T ss_dssp             EECSSEEEEEECCCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             EeeCCEEEEEEecCCCCcHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchh
Confidence            44567889999999999999999863  2358888887777766                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-c------CCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------ARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++.......      ......+||++|+| |+ .      ..++.++|||||||++|||+||+.||..
T Consensus       221 la~~~~~~~~------~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~  283 (437)
T 4aw2_A          221 SCLKLMEDGT------VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYA  283 (437)
T ss_dssp             TCEECCTTSC------EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             hhhhcccCCC------cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCC
Confidence            9987654332      22344789999977 87 2      4688999999999999999999999975

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.81  E-value=1.3e-20  Score=196.37  Aligned_cols=113  Identities=20%  Similarity=0.321  Sum_probs=92.1

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.++++..    .+++.....++.++                  |+|||+|.++.+||+|||
T Consensus       138 ~~~~~~~~lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG  213 (410)
T 3v8s_A          138 FQDDRYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG  213 (410)
T ss_dssp             EECSSEEEEEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             EEECCEEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccc
Confidence            34567789999999999999999753    37777777776666                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCC----CCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR----YQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~----~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +++.......      ......+||+.|+| |+  ...    ++.++|||||||++|||+||+.||..
T Consensus       214 ~a~~~~~~~~------~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~  275 (410)
T 3v8s_A          214 TCMKMNKEGM------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA  275 (410)
T ss_dssp             TCEECCTTSE------EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             eeEeeccCCc------ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCC
Confidence            9987654321      12335789999977 87  222    78999999999999999999999975

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.81  E-value=8.8e-21  Score=195.83  Aligned_cols=168  Identities=9%  Similarity=0.006  Sum_probs=120.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCC--CCcccCHHHHHHHHhhC------------------CCceeeCC----------
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE--ATRRLDLAEGLKIAVDI------------------PSNVLLDY----------  441 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~--~~~~l~~~~~~~ia~~i------------------~~NILld~----------  441 (614)
                      .++..++|||||++|+|.++++...  ....++|..+..|+.++                  |+|||++.          
T Consensus       138 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~  217 (365)
T 3e7e_A          138 FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDD  217 (365)
T ss_dssp             CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC-----
T ss_pred             cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCcccccc
Confidence            4567899999999999999997421  23469999999998888                  99999998          


Q ss_pred             -CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccC
Q 046036          442 -DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADC  517 (614)
Q Consensus       442 -~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~  517 (614)
                       ++.+||+|||+|+.+......     ......+||++|+| |+  ...++.++|||||||++|||+||+.||.......
T Consensus       218 ~~~~~kl~DFG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~  292 (365)
T 3e7e_A          218 LSAGLALIDLGQSIDMKLFPKG-----TIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE  292 (365)
T ss_dssp             -CTTEEECCCTTCEEGGGSCTT-----EEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE
T ss_pred             ccCCEEEeeCchhhhhhccCCC-----ceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc
Confidence             899999999999765432211     23455789999977 87  6668999999999999999999999986432211


Q ss_pred             chHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCC-CCHHHHHHHHHHhHHH
Q 046036          518 LSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNER-MGVREMVMEMNVIKEV  596 (614)
Q Consensus       518 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~R-Psm~ev~~~L~~i~~~  596 (614)
                      ..+                    .......+ .        .+...   ++...|++.+|.+| |+++++.+.|+.+-+.
T Consensus       293 ~~~--------------------~~~~~~~~-~--------~~~~~---~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~  340 (365)
T 3e7e_A          293 CKP--------------------EGLFRRLP-H--------LDMWN---EFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ  340 (365)
T ss_dssp             EEE--------------------CSCCTTCS-S--------HHHHH---HHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             eee--------------------chhccccC-c--------HHHHH---HHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence            100                    00000000 0        11122   23446677888888 7788888888776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=5.7e-23  Score=223.04  Aligned_cols=216  Identities=18%  Similarity=0.176  Sum_probs=155.1

Q ss_pred             CCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCC
Q 046036           32 SPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQ  111 (614)
Q Consensus        32 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  111 (614)
                      ..+++|+.|+|++|+|+ .+|..   +.+++ +|+.|++++|......|..           +..+.+.+..|..++.++
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~---i~~l~-~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~  409 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSE---LESCK-ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFS  409 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHH---HHHHH-HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHH---HHHHH-HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHH
Confidence            56888899999999987 67877   55565 7788888776521112210           111223345555666666


Q ss_pred             CCCccccc-cccc-ccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc
Q 046036          112 NLQKLNPL-ATSL-YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPL  189 (614)
Q Consensus       112 ~L~~L~l~-~~~~-~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  189 (614)
                      +|+.|+.. .+.+ .+..+.+++|.++...+      ..|+.|+|++|.|++ +|. ++.+++|+.|+|++|.|+ .+|.
T Consensus       410 ~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~  480 (567)
T 1dce_A          410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP  480 (567)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG
T ss_pred             hcccCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch
Confidence            66655521 1111 23334466776663322      258889999999985 666 888899999999999998 7788


Q ss_pred             cccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccC-CccccCCCccceEEccCCcCcccCCcc---cCC
Q 046036          190 EVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI-PPFFGSFKGTIDLNLSHNNLSGTIPKE---LET  265 (614)
Q Consensus       190 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~  265 (614)
                      .++.+++|+.|+|++|.|++ +| .++.+++|+.|+|++|.|++.. |..++.+++|+.|+|++|++++.+|..   +..
T Consensus       481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~  558 (567)
T 1dce_A          481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM  558 (567)
T ss_dssp             GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred             hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence            89999999999999999987 45 7888999999999999998776 888999999999999999998765532   234


Q ss_pred             CCCCCEEEC
Q 046036          266 LPFLENLNL  274 (614)
Q Consensus       266 l~~L~~L~l  274 (614)
                      +++|+.|++
T Consensus       559 lp~L~~L~l  567 (567)
T 1dce_A          559 LPSVSSILT  567 (567)
T ss_dssp             CTTCSEEEC
T ss_pred             CcccCccCC
Confidence            788988874

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.81  E-value=8.8e-21  Score=192.40  Aligned_cols=171  Identities=18%  Similarity=0.247  Sum_probs=105.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC---Ceeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM---TAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~---~~kl~D  449 (614)
                      ..++..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++.++   .+||+|
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~D  152 (325)
T 3kn6_A           76 HDQLHTFLVMELLNGGELFERIKKK---KHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIID  152 (325)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECC
T ss_pred             EcCCEEEEEEEccCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEec
Confidence            3466789999999999999999854   358898888888877                  9999997665   899999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||+++.......       .....+||++|+| |.  ...++.++|||||||+++||++|+.||........        
T Consensus       153 fg~a~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~--------  217 (325)
T 3kn6_A          153 FGFARLKPPDNQ-------PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLT--------  217 (325)
T ss_dssp             CTTCEECCC-----------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC---------------
T ss_pred             cccceecCCCCC-------cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccc--------
Confidence            999987654321       2345678999977 87  66789999999999999999999999975322100        


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                        .....+.......+........       .......+.++...|++.+|++|||++|+++
T Consensus       218 --~~~~~~~~~~i~~~~~~~~~~~-------~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          218 --CTSAVEIMKKIKKGDFSFEGEA-------WKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             --CCCHHHHHHHHTTTCCCCCSHH-------HHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             --cccHHHHHHHHHcCCCCCCccc-------ccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence              0111222222222222111100       0112233456777999999999999999873

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.8e-20  Score=195.54  Aligned_cols=194  Identities=20%  Similarity=0.185  Sum_probs=127.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee----CCCCCeeeccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL----DYDMTAYVGDF  450 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl----d~~~~~kl~Df  450 (614)
                      ....++|||||++|+|.+++........+++..+..++.++                  |+|||+    +.++.+||+||
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DF  160 (396)
T 4eut_A           81 TRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDF  160 (396)
T ss_dssp             TCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCG
T ss_pred             CCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecC
Confidence            34679999999999999999865433448999998888877                  999999    88888999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--c--------CCCCccCceeehhHHHHHHHhCCCCCCcccccCc-
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL-  518 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~-  518 (614)
                      |+++......        ......||+.|+| |.  .        ..++.++|||||||++|||+||+.||........ 
T Consensus       161 G~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~  232 (396)
T 4eut_A          161 GAARELEDDE--------QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN  232 (396)
T ss_dssp             GGCEECCCGG--------GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTC
T ss_pred             CCceEccCCC--------ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccch
Confidence            9998765432        2334679999977 86  2        4678899999999999999999999975322111 


Q ss_pred             -hHHHHHHhhCCCChHHHHHHHHhcC--cCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          519 -SLHNFCEMALPESVMELVYSRLLQG--VDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       519 -~l~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                       ....-.....|......+.......  +............   .....+..+...|++.||++||++.|+++.++.+..
T Consensus       233 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~  309 (396)
T 4eut_A          233 KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSR---GLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (396)
T ss_dssp             HHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCH---HHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccch---HHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence             1111111111110000000000000  0000000111111   223344567779999999999999999999987765


Q ss_pred             Hh
Q 046036          596 VL  597 (614)
Q Consensus       596 ~~  597 (614)
                      ..
T Consensus       310 ~~  311 (396)
T 4eut_A          310 RM  311 (396)
T ss_dssp             CE
T ss_pred             ce
Confidence            43

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.81  E-value=5.6e-20  Score=185.61  Aligned_cols=156  Identities=22%  Similarity=0.347  Sum_probs=115.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||++
T Consensus        77 ~~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a  153 (318)
T 1fot_A           77 DAQQIFMIMDYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFA  153 (318)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             eCCEEEEEEeCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcc
Confidence            456789999999999999999753   357888877777766                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.....          ....+||+.|+| |.  ...++.++||||+||++|||++|+.||.....               
T Consensus       154 ~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---------------  208 (318)
T 1fot_A          154 KYVPDV----------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT---------------  208 (318)
T ss_dssp             EECSSC----------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH---------------
T ss_pred             eecCCc----------cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH---------------
Confidence            876432          234689999977 87  66789999999999999999999999975211               


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~  588 (614)
                        .+.....+...... |   +.+.    +   .+.++...|++.+|++||     ++.|+++
T Consensus       209 --~~~~~~i~~~~~~~-p---~~~~----~---~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          209 --MKTYEKILNAELRF-P---PFFN----E---DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             --HHHHHHHHHCCCCC-C---TTSC----H---HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             --HHHHHHHHhCCCCC-C---CCCC----H---HHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence              11222222222111 1   0111    1   233456689999999999     8888874

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.81  E-value=1.3e-20  Score=190.15  Aligned_cols=168  Identities=18%  Similarity=0.315  Sum_probs=109.2

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++||||+++|+|.++++..   ..+++..+..++.++                  |+||+++.++.+||+|||+++..
T Consensus        90 ~~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~  166 (311)
T 3ork_A           90 LPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAI  166 (311)
T ss_dssp             EEEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred             ccEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence            348999999999999999753   358888888888777                  99999999999999999999876


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCChH
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVM  533 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~~  533 (614)
                      ......    ........||+.|+| |.  ...++.++|||||||++|||+||+.||......                 
T Consensus       167 ~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-----------------  225 (311)
T 3ork_A          167 ADSGNS----VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV-----------------  225 (311)
T ss_dssp             -------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-----------------
T ss_pred             cccccc----cccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-----------------
Confidence            543221    112334679999977 87  668899999999999999999999999753221                 


Q ss_pred             HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH-HHHHh
Q 046036          534 ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM-EMNVI  593 (614)
Q Consensus       534 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~-~L~~i  593 (614)
                      +.....+.....+    ...   ........+.++...|++.+|++||++.+++. .+.++
T Consensus       226 ~~~~~~~~~~~~~----~~~---~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  279 (311)
T 3ork_A          226 SVAYQHVREDPIP----PSA---RHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV  279 (311)
T ss_dssp             HHHHHHHHCCCCC----HHH---HSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCC----ccc---ccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence            1111111111100    000   00011223446778999999999997777664 44433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=1e-22  Score=221.08  Aligned_cols=202  Identities=16%  Similarity=0.138  Sum_probs=160.0

Q ss_pred             ccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccc
Q 046036           59 TNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGN  138 (614)
Q Consensus        59 ~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~  138 (614)
                      ..++ +|+.|+|++|+++ .+|..++++++|+.|++++|......|..                       +..+++.+.
T Consensus       346 ~~~~-~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------------------l~~~~~~~~  400 (567)
T 1dce_A          346 ATDE-QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------------------MRALDPLLY  400 (567)
T ss_dssp             STTT-TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------------------HHHHCTGGG
T ss_pred             ccCc-cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------------------HHhcccccC
Confidence            4455 8899999999997 78999999999999999776532222211                       222334456


Q ss_pred             cchhhhccCCCCeee-cccc-------------cCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCC
Q 046036          139 IPESLENLTSLQILN-LSCN-------------HLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSE  204 (614)
Q Consensus       139 ~~~~~~~l~~L~~L~-L~~N-------------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  204 (614)
                      +|..++.+++|+.|+ ++.|             .++.. |.     ..|+.|+|++|.|++ +|. ++.+++|+.|+|++
T Consensus       401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~  472 (567)
T 1dce_A          401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSH  472 (567)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCS
T ss_pred             CHHHHHHHHhcccCcchhhcccchhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCc
Confidence            777788888887777 4544             44421 21     258999999999995 666 99999999999999


Q ss_pred             ccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccC-CcccCCCCCCCEEECcCCcCcccC
Q 046036          205 HMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTI-PKELETLPFLENLNLSFNNFEGQL  283 (614)
Q Consensus       205 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~  283 (614)
                      |.|+ .+|..|+.+++|+.|+|++|.|++ +| .++.+++|+.|+|++|+|++.. |..+..+++|+.|++++|++++.+
T Consensus       473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          473 NRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            9999 678899999999999999999996 66 8999999999999999999877 999999999999999999999988


Q ss_pred             CCccc----cCCCceEE
Q 046036          284 PSMSV----FTNTSVIS  296 (614)
Q Consensus       284 p~~~~----~~~l~~~~  296 (614)
                      |....    +++++.++
T Consensus       550 ~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          550 GIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCTTHHHHHCTTCSEEE
T ss_pred             cHHHHHHHHCcccCccC
Confidence            75432    56776664

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.81  E-value=1.9e-20  Score=189.50  Aligned_cols=179  Identities=15%  Similarity=0.154  Sum_probs=116.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++ ++.+||+|||+
T Consensus        99 ~~~~~~~iv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~  175 (319)
T 2y4i_B           99 MSPPHLAIITSLCKGRTLYSVVRDA--KIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGL  175 (319)
T ss_dssp             ECSSCEEEECBCCCSEEHHHHTTSS--CCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSC
T ss_pred             ecCCceEEEeecccCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCC
Confidence            3456789999999999999999764  2358888888887777                  9999998 67999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c----------CCCCccCceeehhHHHHHHHhCCCCCCcccccCchH
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V----------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL  520 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~----------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l  520 (614)
                      ++........  ..........||+.|+| |. .          ..++.++|||||||+++||+||+.||......    
T Consensus       176 ~~~~~~~~~~--~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~----  249 (319)
T 2y4i_B          176 FSISGVLQAG--RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE----  249 (319)
T ss_dssp             CC------------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH----
T ss_pred             cccccccccc--ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH----
Confidence            8765432111  00112334569999977 76 2          24788999999999999999999999753211    


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhcc
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLGV  600 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~~  600 (614)
                                   +.... +.....+.... ...       ...+.+++..|++.+|++|||+.|++++|+.+.....+.
T Consensus       250 -------------~~~~~-~~~~~~~~~~~-~~~-------~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~~  307 (319)
T 2y4i_B          250 -------------AIIWQ-MGTGMKPNLSQ-IGM-------GKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRL  307 (319)
T ss_dssp             -------------HHHHH-HHTTCCCCCCC-SSC-------CTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-------
T ss_pred             -------------HHHHH-hccCCCCCCCc-CCC-------CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhccC
Confidence                         11111 11111111000 000       112345777999999999999999999999998776544

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.81  E-value=5e-20  Score=185.54  Aligned_cols=170  Identities=16%  Similarity=0.240  Sum_probs=111.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus       105 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~  181 (309)
T 2h34_A          105 IDGQLYVDMRLINGVDLAAMLRRQ---GPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIA  181 (309)
T ss_dssp             ETTEEEEEEECCCCEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-
T ss_pred             eCCeEEEEEEecCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccC
Confidence            356789999999999999999753   358888888888877                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.......      .......||+.|+| |.  ...++.++||||||++++||+||+.||......              
T Consensus       182 ~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------------  241 (309)
T 2h34_A          182 SATTDEKL------TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--------------  241 (309)
T ss_dssp             ---------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--------------
T ss_pred             cccccccc------ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--------------
Confidence            87654321      12334679999976 87  667889999999999999999999999753211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-CHHHHHHHHHHhHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-GVREMVMEMNVIKE  595 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-sm~ev~~~L~~i~~  595 (614)
                          .+...+...........+..       ...+.++...|++.+|++|| +++++++.|+++..
T Consensus       242 ----~~~~~~~~~~~~~~~~~~~~-------~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~  296 (309)
T 2h34_A          242 ----VMGAHINQAIPRPSTVRPGI-------PVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA  296 (309)
T ss_dssp             ----HHHHHHHSCCCCGGGTSTTC-------CTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred             ----HHHHHhccCCCCccccCCCC-------CHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence                11111111111000000111       11234567799999999999 99999999986643

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.81  E-value=2e-20  Score=186.59  Aligned_cols=172  Identities=19%  Similarity=0.229  Sum_probs=120.1

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+++|+|.+++...  ...+++..+.+++.++                  |+||+++.++.+||+|||+++.
T Consensus        93 ~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~  170 (291)
T 1u46_A           93 PPMKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRA  170 (291)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             CCceeeEecccCCCHHHHHHhc--cCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEcccccccc
Confidence            3478999999999999999753  2358888888888777                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......    ........||+.|+| |.  ...++.++|||||||+++||++ |+.||.....                
T Consensus       171 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~----------------  230 (291)
T 1u46_A          171 LPQNDDH----YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG----------------  230 (291)
T ss_dssp             CCC-CCE----EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH----------------
T ss_pred             ccccccc----hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH----------------
Confidence            7544321    112234568888977 87  5678899999999999999999 9999975321                


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                       .+.+......... .+ ...       .....+.+++..|++.+|++|||+.++++.|+++....
T Consensus       231 -~~~~~~~~~~~~~-~~-~~~-------~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  286 (291)
T 1u46_A          231 -SQILHKIDKEGER-LP-RPE-------DCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTD  286 (291)
T ss_dssp             -HHHHHHHHTSCCC-CC-CCT-------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred             -HHHHHHHHccCCC-CC-CCc-------CcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccc
Confidence             1111111111111 00 000       11223456777999999999999999999998876543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.81  E-value=1.9e-20  Score=186.38  Aligned_cols=165  Identities=18%  Similarity=0.210  Sum_probs=112.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceee---CCCCCeeec
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLL---DYDMTAYVG  448 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILl---d~~~~~kl~  448 (614)
                      ...+..++||||+++|+|.+++.... ....+++..+.+++.++                  |+||++   +.++.+||+
T Consensus        90 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~  169 (285)
T 3is5_A           90 EDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKII  169 (285)
T ss_dssp             ECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEEC
T ss_pred             ecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEE
Confidence            34567899999999999999986421 23458888888888777                  999999   456789999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      |||+++......        ......||+.|+| |. ...++.++|||||||+++||++|+.||......          
T Consensus       170 Dfg~a~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~----------  231 (285)
T 3is5_A          170 DFGLAELFKSDE--------HSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE----------  231 (285)
T ss_dssp             CCCCCCC------------------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH----------
T ss_pred             eeecceecCCcc--------cCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHH----------
Confidence            999998765432        1334679999977 87 778899999999999999999999999753211          


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             +................++ .       ...+.++...|++.+|++|||+.||++
T Consensus       232 -------~~~~~~~~~~~~~~~~~~~-~-------~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          232 -------EVQQKATYKEPNYAVECRP-L-------TPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             -------HHHHHHHHCCCCCCC--CC-C-------CHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             -------HHHhhhccCCcccccccCc-C-------CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                   1111111111110000000 0       123345777999999999999999985

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.81  E-value=3.6e-20  Score=189.02  Aligned_cols=167  Identities=17%  Similarity=0.179  Sum_probs=116.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC----CCeeec
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD----MTAYVG  448 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~----~~~kl~  448 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||+.++    +.+||+
T Consensus        86 ~~~~~~~lv~E~~~gg~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~  162 (342)
T 2qr7_A           86 DDGKYVYVVTELMKGGELLDKILRQ---KFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRIC  162 (342)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHTC---TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEEC
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEE
Confidence            4567789999999999999999754   358888888887777                  999998543    349999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++.......       .....+||+.|+| |.  ...++.++||||+||++|||++|+.||......         
T Consensus       163 Dfg~a~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~---------  226 (342)
T 2qr7_A          163 DFGFAKQLRAENG-------LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD---------  226 (342)
T ss_dssp             CCTTCEECBCTTC-------CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS---------
T ss_pred             ECCCcccCcCCCC-------ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC---------
Confidence            9999987654322       2345689999977 87  456889999999999999999999999753211         


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           ...+++.....+.............       ..+.++...|++.+|++||++.|+++
T Consensus       227 -----~~~~~~~~i~~~~~~~~~~~~~~~s-------~~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          227 -----TPEEILARIGSGKFSLSGGYWNSVS-------DTAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             -----CHHHHHHHHHHCCCCCCSTTTTTSC-------HHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             -----CHHHHHHHHccCCcccCccccccCC-------HHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                 1112222222222211111111111       12335667899999999999999885

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.80  E-value=1.7e-20  Score=187.07  Aligned_cols=159  Identities=20%  Similarity=0.348  Sum_probs=114.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeC-CCCCeeecccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLD-YDMTAYVGDFG  451 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld-~~~~~kl~DfG  451 (614)
                      +...++||||+++|+|.+++...   ..+++..+..++.++                    |+||+++ .++.+||+|||
T Consensus       101 ~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg  177 (290)
T 1t4h_A          101 KKCIVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLG  177 (290)
T ss_dssp             CEEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTT
T ss_pred             CceEEEEEEecCCCCHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCC
Confidence            46689999999999999999753   347787777776655                    8999998 78999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +++.....         ......||+.|+| |. ...++.++||||+||+++||+||+.||.......            
T Consensus       178 ~~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~------------  236 (290)
T 1t4h_A          178 LATLKRAS---------FAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAA------------  236 (290)
T ss_dssp             GGGGCCTT---------SBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH------------
T ss_pred             Cccccccc---------ccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH------------
Confidence            99765432         1334679999976 87 6679999999999999999999999997532110            


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          .. ...+.....+.. ...       .....+.++...|++.+|++|||+.|+++
T Consensus       237 ----~~-~~~~~~~~~~~~-~~~-------~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          237 ----QI-YRRVTSGVKPAS-FDK-------VAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             ----HH-HHHHTTTCCCGG-GGG-------CCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ----HH-HHHHhccCCccc-cCC-------CCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence                11 111111110000 000       01123456778999999999999999985

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.80  E-value=3.1e-20  Score=191.92  Aligned_cols=161  Identities=19%  Similarity=0.271  Sum_probs=115.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus        85 ~~~~~~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~  161 (384)
T 4fr4_A           85 QDEEDMFMVVDLLLGGDLRYHLQQN---VHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNI  161 (384)
T ss_dssp             ECSSEEEEEECCCTTEEHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             EeCCEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccce
Confidence            3466789999999999999999853   358888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c----CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V----ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~----~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ++.+....        .....+||++|+| |+ .    ..++.++||||+||++|||+||+.||.......         
T Consensus       162 a~~~~~~~--------~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~---------  224 (384)
T 4fr4_A          162 AAMLPRET--------QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS---------  224 (384)
T ss_dssp             CEECCTTC--------CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC---------
T ss_pred             eeeccCCC--------ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc---------
Confidence            98765432        2445789999977 87 2    348899999999999999999999997532211         


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCC-HHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMG-VREMV  587 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPs-m~ev~  587 (614)
                           ..+.......... ..|.   .+       -..+.++...|++.+|++||+ +.+|.
T Consensus       225 -----~~~~~~~~~~~~~-~~p~---~~-------s~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          225 -----SKEIVHTFETTVV-TYPS---AW-------SQEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             -----HHHHHHHHHHCCC-CCCT---TS-------CHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             -----HHHHHHHHhhccc-CCCC---cC-------CHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence                 1111111111111 1111   11       123345667899999999998 66554

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.80  E-value=6.1e-20  Score=203.70  Aligned_cols=156  Identities=22%  Similarity=0.284  Sum_probs=116.6

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +...+..|+|||||++|+|.++++..   ..+++..+..++.++                  |+|||+|.++.+||+|||
T Consensus       411 ~~~~~~~~lV~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFG  487 (674)
T 3pfq_A          411 FQTMDRLYFVMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFG  487 (674)
T ss_dssp             CBCSSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCT
T ss_pred             EEeCCEEEEEEeCcCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecc
Confidence            34567789999999999999999853   358888888888777                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++......       ......+||++|+| |+  ...++.++|||||||++|||+||+.||.....             
T Consensus       488 la~~~~~~~-------~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~-------------  547 (674)
T 3pfq_A          488 MCKENIWDG-------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-------------  547 (674)
T ss_dssp             TCEECCCTT-------CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-------------
T ss_pred             eeeccccCC-------cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH-------------
Confidence            998644332       22445789999977 87  67899999999999999999999999975321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGV  583 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm  583 (614)
                          .+.....+..... .|.   .+.       ..+.++...|++.+|++||++
T Consensus       548 ----~~~~~~i~~~~~~-~p~---~~s-------~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          548 ----DELFQSIMEHNVA-YPK---SMS-------KEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             ----HHHHHHHHSSCCC-CCT---TSC-------HHHHHHHHHHSCSSSTTCTTC
T ss_pred             ----HHHHHHHHhCCCC-CCc---cCC-------HHHHHHHHHHccCCHHHCCCC
Confidence                1222222222211 111   111       123356668999999999998

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.80  E-value=6.7e-20  Score=185.70  Aligned_cols=163  Identities=18%  Similarity=0.204  Sum_probs=118.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC----Ceeec
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM----TAYVG  448 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~----~~kl~  448 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++    .+||+
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~  161 (321)
T 2a2a_A           85 ENRTDVVLILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLI  161 (321)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHTC---SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred             ecCCEEEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEc
Confidence            3456789999999999999999753   358888888887777                  9999999888    79999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++......        ......||+.|+| |.  ...++.++|||||||+++||+||+.||......         
T Consensus       162 Dfg~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---------  224 (321)
T 2a2a_A          162 DFGLAHEIEDGV--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ---------  224 (321)
T ss_dssp             CCTTCEECCTTC--------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH---------
T ss_pred             cCccceecCccc--------cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH---------
Confidence            999998765432        1334679999977 87  567899999999999999999999999753211         


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              +.+...........    +..   .......+.++...|++.+|++|||+.|+++
T Consensus       225 --------~~~~~i~~~~~~~~----~~~---~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          225 --------ETLANITSVSYDFD----EEF---FSHTSELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             --------HHHHHHHTTCCCCC----HHH---HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             --------HHHHHHHhcccccC----hhh---hcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                    11111111111000    000   0011123446778999999999999999986

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.80  E-value=4.1e-20  Score=190.64  Aligned_cols=163  Identities=21%  Similarity=0.341  Sum_probs=117.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+|++|||+
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~  246 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTEK---VALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGF  246 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCc
Confidence            3456789999999999999999743   358888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c-------CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V-------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~-------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      ++.+....        .....+||+.|+| |+ .       ..++.++|||||||++|||+||+.||.....  .     
T Consensus       247 ~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~--~-----  311 (365)
T 2y7j_A          247 SCHLEPGE--------KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ--I-----  311 (365)
T ss_dssp             CEECCTTC--------CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--H-----
T ss_pred             ccccCCCc--------ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH--H-----
Confidence            98775432        2334789999977 86 1       2578899999999999999999999975211  0     


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                +.............   .+.+    ......+.++...|++.+|++|||+.|+++
T Consensus       312 ----------~~~~~i~~~~~~~~---~~~~----~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          312 ----------LMLRMIMEGQYQFS---SPEW----DDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             ----------HHHHHHHHTCCCCC---HHHH----SSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ----------HHHHHHHhCCCCCC---Cccc----ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                      11111111111000   0000    011123456777999999999999999986

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.80  E-value=4.4e-20  Score=204.25  Aligned_cols=169  Identities=20%  Similarity=0.265  Sum_probs=120.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++|+|.+++...  ...++|..+..++.++                  |+|||++.++.+||+|||+++
T Consensus       462 ~~~~~lv~E~~~~g~L~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~  539 (656)
T 2j0j_A          462 ENPVWIIMELCTLGELRSFLQVR--KFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR  539 (656)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHT--TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCC
T ss_pred             cCceEEEEEcCCCCcHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCe
Confidence            45679999999999999999753  2358898888887776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......      .......||+.|+| |.  ...++.++|||||||++|||++ |+.||......              
T Consensus       540 ~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--------------  599 (656)
T 2j0j_A          540 YMEDSTY------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--------------  599 (656)
T ss_dssp             SCCC----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--------------
T ss_pred             ecCCCcc------eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--------------
Confidence            7654322      12334567889977 87  6688999999999999999997 99999753211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                         +.+.........+.+.          .+...+.+++..|++.+|++|||+.|+++.|+.+.+.
T Consensus       600 ---~~~~~i~~~~~~~~~~----------~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~  652 (656)
T 2j0j_A          600 ---DVIGRIENGERLPMPP----------NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  652 (656)
T ss_dssp             ---HHHHHHHHTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHcCCCCCCCc----------cccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence               1111111111111111          1112344677899999999999999999999988654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.80  E-value=4.6e-20  Score=195.63  Aligned_cols=159  Identities=19%  Similarity=0.245  Sum_probs=115.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..+..++|||||++|+|.+++...   ..+++..+..++.++                   |+|||++.++.+||+|||+
T Consensus       219 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~  295 (446)
T 4ejn_A          219 THDRLCFVMEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL  295 (446)
T ss_dssp             ETTEEEEEECCCSSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCC
T ss_pred             eCCEEEEEEeeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCC
Confidence            456789999999999999999753   357888777776655                   9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||++|+| |+  ...++.++|||||||+++||+||+.||.....              
T Consensus       296 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--------------  354 (446)
T 4ejn_A          296 CKEGIKDG-------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--------------  354 (446)
T ss_dssp             CCTTCC------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             ceeccCCC-------cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--------------
Confidence            98644332       12345789999977 87  67899999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~  588 (614)
                         .+........... .|..   ..       ..+.++...|++.+|++||     +++|+++
T Consensus       355 ---~~~~~~i~~~~~~-~p~~---~~-------~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          355 ---EKLFELILMEEIR-FPRT---LG-------PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             ---HHHHHHHHHCCCC-CCTT---SC-------HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             ---HHHHHHHHhCCCC-CCcc---CC-------HHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence               1112222222111 1110   11       1234566789999999999     9999985

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.80  E-value=5.8e-20  Score=186.87  Aligned_cols=167  Identities=19%  Similarity=0.281  Sum_probs=115.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++|||||++|+|.+++.........+|..+.+++.++                  |+||+++.++.+||+|||+++
T Consensus       133 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~  212 (332)
T 3qd2_B          133 KVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVT  212 (332)
T ss_dssp             CCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCccc
Confidence            45689999999999999999876555567777777777666                  999999999999999999998


Q ss_pred             ccCCCCCCCC-----CCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          455 FLPTNVTNPM-----KGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       455 ~~~~~~~~~~-----~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ..........     ..........||+.|+| |.  ...++.++|||||||+++||++|..|+....            
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~------------  280 (332)
T 3qd2_B          213 AMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV------------  280 (332)
T ss_dssp             ECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH------------
T ss_pred             ccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH------------
Confidence            8765422100     00112334679999977 87  6688999999999999999999877653210            


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             +..........       +.   ........+.++...|++.+|++|||+.|+++
T Consensus       281 -------~~~~~~~~~~~-------~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          281 -------RIITDVRNLKF-------PL---LFTQKYPQEHMMVQDMLSPSPTERPEATDIIE  325 (332)
T ss_dssp             -------HHHHHHHTTCC-------CH---HHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred             -------HHHHHhhccCC-------Cc---ccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence                   00111111000       00   01122233456778999999999999999985

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.80  E-value=5.8e-20  Score=193.00  Aligned_cols=162  Identities=22%  Similarity=0.233  Sum_probs=109.2

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC---CCeeecccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD---MTAYVGDFG  451 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~---~~~kl~DfG  451 (614)
                      .+..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++.+   ..+||+|||
T Consensus       211 ~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG  287 (419)
T 3i6u_A          211 AEDYYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFG  287 (419)
T ss_dssp             SSEEEEEEECCTTCBGGGGTSSS---CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSS
T ss_pred             cCceEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecc
Confidence            44578999999999999999753   358898888887777                  999999754   459999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      +++......        .....+||++|+| |+     ...++.++|||||||+++||+||+.||........ +.....
T Consensus       288 ~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~-~~~~i~  358 (419)
T 3i6u_A          288 HSKILGETS--------LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-LKDQIT  358 (419)
T ss_dssp             TTTSCC-------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC-HHHHHH
T ss_pred             cceecCCCc--------cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH-HHHHHh
Confidence            998765432        2345789999977 87     25678899999999999999999999975322211 111111


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ........+.                      ..+....+.++...|++.+|++|||+.|+++
T Consensus       359 ~~~~~~~~~~----------------------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          359 SGKYNFIPEV----------------------WAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             TTCCCCCHHH----------------------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cCCCCCCchh----------------------hcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            1100000000                      0111223456778999999999999999986

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.80  E-value=6.2e-20  Score=187.86  Aligned_cols=157  Identities=20%  Similarity=0.228  Sum_probs=116.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus       111 ~~~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~  187 (350)
T 1rdq_E          111 KDNSNLYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF  187 (350)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEccccc
Confidence            3456789999999999999999753   258888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.....          ....+||+.|+| |.  ...++.++||||+||+++||++|+.||.....              
T Consensus       188 a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--------------  243 (350)
T 1rdq_E          188 AKRVKGR----------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP--------------  243 (350)
T ss_dssp             CEECSSC----------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             ceeccCC----------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH--------------
Confidence            9876432          234689999977 87  66789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCC-----HHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMG-----VREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPs-----m~ev~~  588 (614)
                         .+........... .|.   .+.       ..+.++...|++.+|++||+     ++|+.+
T Consensus       244 ---~~~~~~i~~~~~~-~p~---~~~-------~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          244 ---IQIYEKIVSGKVR-FPS---HFS-------SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             ---HHHHHHHHHCCCC-CCT---TCC-------HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             ---HHHHHHHHcCCCC-CCC---CCC-------HHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence               1122222222111 111   111       12345667899999999998     787764

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.80  E-value=8.7e-20  Score=193.73  Aligned_cols=158  Identities=23%  Similarity=0.282  Sum_probs=116.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||++
T Consensus        87 ~~~~~~lv~E~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a  163 (476)
T 2y94_A           87 TPSDIFMVMEYVSGGELFDYICKN---GRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS  163 (476)
T ss_dssp             CSSEEEEEEECCSSEEHHHHTTSS---SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSC
T ss_pred             ECCEEEEEEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccch
Confidence            456789999999999999999753   358888888888877                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +......        .....+||+.|+| |.  ... .+.++||||+||+++||++|+.||++...              
T Consensus       164 ~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~--------------  221 (476)
T 2y94_A          164 NMMSDGE--------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV--------------  221 (476)
T ss_dssp             EECCTTC--------CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS--------------
T ss_pred             hhccccc--------cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH--------------
Confidence            8765432        1334689999977 87  333 47899999999999999999999975311              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+.......+.. ..|..   ..       ..+.++...|++.+|++|||+.|+++
T Consensus       222 ---~~~~~~i~~~~~-~~p~~---~s-------~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          222 ---PTLFKKICDGIF-YTPQY---LN-------PSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             ---HHHHHHHHTTCC-CCCTT---CC-------HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ---HHHHHHHhcCCc-CCCcc---CC-------HHHHHHHHHHcCCCchhCcCHHHHHh
Confidence               111112221111 11111   11       12345667899999999999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=1.6e-19  Score=169.16  Aligned_cols=153  Identities=15%  Similarity=0.206  Sum_probs=99.1

Q ss_pred             CCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCC
Q 046036           32 SPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQ  111 (614)
Q Consensus        32 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  111 (614)
                      +.+++|++|++++|.++ .+| .   +..++ +|++|++++|.++  .+..+..+++|++|++++|.+++..+..++.++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~---l~~l~-~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-G---IEYAH-NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-T---GGGCT-TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             hhcCCccEEeccCCCcc-ChH-H---HhcCC-CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            45566777777777666 344 3   45555 6777777777554  233566677777777777777666666666666


Q ss_pred             CCCcccccccccccceEecCCCccccccchhhhccCCCCeeeccccc-CCCCCCCCCCCCCCCCEEEcCCCCCccCCccc
Q 046036          112 NLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNH-LGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLE  190 (614)
Q Consensus       112 ~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  190 (614)
                      +|++|+            |++|++++..+..+..+++|++|+|++|. ++ .+| .+..+++|+.|++++|.+++ ++ .
T Consensus       113 ~L~~L~------------Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~  176 (197)
T 4ezg_A          113 SLTLLD------------ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-G  176 (197)
T ss_dssp             TCCEEE------------CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-T
T ss_pred             CCCEEE------------ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-H
Confidence            666665            77777776666667777777777777776 44 444 46667777777777777764 33 5


Q ss_pred             ccCCCCCceeccCCccCC
Q 046036          191 VGSLSNTQELDFSEHMLS  208 (614)
Q Consensus       191 ~~~l~~L~~L~ls~N~l~  208 (614)
                      +..+++|+.|++++|++.
T Consensus       177 l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          177 IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGGCSSCCEEEECBC---
T ss_pred             hccCCCCCEEEeeCcccC
Confidence            667777777777777764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.80  E-value=2.9e-20  Score=193.63  Aligned_cols=121  Identities=17%  Similarity=0.162  Sum_probs=93.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++|||||++|+|.+++.... ...+++..+..++.++                  |+|||++.++.+||+|||.+
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~  175 (389)
T 3gni_B           97 ADNELWVVTSFMAYGSAKDLICTHF-MDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSN  175 (389)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGC
T ss_pred             ECCEEEEEEEccCCCCHHHHHhhhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccc
Confidence            4567899999999999999997542 2458888888888777                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--c--CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .....................||+.|+| |.  .  ..++.++|||||||+++||+||+.||.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  240 (389)
T 3gni_B          176 LSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  240 (389)
T ss_dssp             EECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             eeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence            7543221110000112233579999977 87  3  57899999999999999999999999764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=5.6e-22  Score=218.59  Aligned_cols=290  Identities=13%  Similarity=0.075  Sum_probs=182.4

Q ss_pred             ccccCCCCCCeeeecCCcccc----cCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCccc---c
Q 046036            5 QEIGNLFRLQNLNFGNSTVQG----EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFA---G   77 (614)
Q Consensus         5 ~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~---~   77 (614)
                      ..+.++++|++|+|++|.+++    .++..+.++++|++|+|++|.+.+ +|..   +.+++ +|+.|+++++...   .
T Consensus       186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~---~~~~~-~L~~L~l~~~~~~~~~~  260 (592)
T 3ogk_B          186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF---FKAAA-NLEEFCGGSLNEDIGMP  260 (592)
T ss_dssp             HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH---HHHCT-TCCEEEECBCCCCTTCT
T ss_pred             HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH---Hhhhh-HHHhhcccccccccchH
Confidence            345568999999999999873    344455678999999999998885 4544   56666 7888888753322   1


Q ss_pred             cCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc-------------ccceEecCCCccc-cccchhh
Q 046036           78 DIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL-------------YSFQLNLAENNLT-GNIPESL  143 (614)
Q Consensus        78 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~-------------~l~~L~L~~N~l~-~~~~~~~  143 (614)
                      ..+..+..+++|+.|+++++.. +.+|..+..+++|++|++..+.+             +++.|+++ +.+. +.++..+
T Consensus       261 ~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~  338 (592)
T 3ogk_B          261 EKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA  338 (592)
T ss_dssp             TSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH
T ss_pred             HHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH
Confidence            2233445555666666655432 24555555555666655522211             45566677 4443 3334445


Q ss_pred             hccCCCCeeeccc-----------ccCCCC-CCCCCCCCCCCCEEEcCCCCCccCCcccccC-CCCCceeccC----Ccc
Q 046036          144 ENLTSLQILNLSC-----------NHLGGS-IPKPSGLFSTLSSIDFAHNNFNGSLPLEVGS-LSNTQELDFS----EHM  206 (614)
Q Consensus       144 ~~l~~L~~L~L~~-----------N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~ls----~N~  206 (614)
                      ..+++|++|+|++           |.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            6678888888883           455422 1111234678888888888887766666655 7788888885    566


Q ss_pred             CCCC-----ccccccCcccchHHhccCcc--ccccCCcccc-CCCccceEEccCCcCcc-cCCcccCCCCCCCEEECcCC
Q 046036          207 LSDE-----IPITLGNRSKFEHLLLGGNM--FQGRIPPFFG-SFKGTIDLNLSHNNLSG-TIPKELETLPFLENLNLSFN  277 (614)
Q Consensus       207 l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N  277 (614)
                      +++.     ++..+..+++|+.|++++|.  +++..+..+. .+++|+.|+|++|++++ .++..+..+++|+.|++++|
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence            7653     33335567788888886433  5444444443 36778888888888775 34455567788888888888


Q ss_pred             cCccc-CCC-ccccCCCceEEEecCC
Q 046036          278 NFEGQ-LPS-MSVFTNTSVISIVGNG  301 (614)
Q Consensus       278 ~l~~~-~p~-~~~~~~l~~~~~~~N~  301 (614)
                      .+++. ++. ...+++++.+++.+|.
T Consensus       499 ~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          499 CFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CCcHHHHHHHHHhcCccCeeECcCCc
Confidence            87643 222 2346777888888876

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.80  E-value=4.4e-20  Score=186.12  Aligned_cols=185  Identities=17%  Similarity=0.138  Sum_probs=116.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        73 ~~~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  149 (311)
T 4agu_A           73 RKRRLHLVFEYCDHTVLHELDRYQ---RGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFA  149 (311)
T ss_dssp             ETTEEEEEEECCSEEHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             cCCeEEEEEEeCCCchHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCc
Confidence            356689999999999999998743   358888888887776                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......       ......||++|+| |.   ...++.++||||+||+++||+||+.||........ . ........
T Consensus       150 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~-~~~~~~~~  220 (311)
T 4agu_A          150 RLLTGPSD-------YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQ-L-YLIRKTLG  220 (311)
T ss_dssp             EECC-------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-H-HHHHHHHC
T ss_pred             hhccCccc-------ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH-H-HHHHHHhc
Confidence            87654321       2334679999977 86   35789999999999999999999999976432111 1 11111111


Q ss_pred             CChH---HHHHH--HHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVM---ELVYS--RLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~---~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....   .....  .......+.+................+.++...|++.+|++|||++|+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          221 DLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             SCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             ccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            1111   11110  01111111111111111111122334567888999999999999999985

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.80  E-value=2.3e-20  Score=189.77  Aligned_cols=157  Identities=22%  Similarity=0.340  Sum_probs=113.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+ +|+|.+++...   ..+++..+..++.++                  |+|||+++++.+||+|||++
T Consensus        80 ~~~~~~lv~E~~-~g~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s  155 (336)
T 3h4j_B           80 TPTDIVMVIEYA-GGELFDYIVEK---KRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLS  155 (336)
T ss_dssp             CSSEEEEEECCC-CEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCT
T ss_pred             eCCEEEEEEECC-CCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccc
Confidence            456789999999 68999998753   358888888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +......        .....+||+.|+| |.  ... .+.++|||||||++|||++|+.||+........          
T Consensus       156 ~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~----------  217 (336)
T 3h4j_B          156 NIMTDGN--------FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF----------  217 (336)
T ss_dssp             BTTTTSB--------TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB----------
T ss_pred             eeccCCc--------ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH----------
Confidence            8765432        2334689999976 87  333 368999999999999999999999753221100          


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..        +.......|.   ...       ..+.++...|++.+|.+|||++|+++
T Consensus       218 ~~--------i~~~~~~~p~---~~s-------~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          218 KK--------VNSCVYVMPD---FLS-------PGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             CC--------CCSSCCCCCT---TSC-------HHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             HH--------HHcCCCCCcc---cCC-------HHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            00        0000000010   011       12335667999999999999999975

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.80  E-value=3.5e-20  Score=183.38  Aligned_cols=164  Identities=20%  Similarity=0.304  Sum_probs=116.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  152 (276)
T 2yex_A           76 EGNIQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA  152 (276)
T ss_dssp             ETTEEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             cCCEEEEEEEecCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCc
Confidence            346679999999999999999753   358888888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +........     .......||+.|+| |.  ... .+.++|||||||+++||+||+.||............|..... 
T Consensus       153 ~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~-  226 (276)
T 2yex_A          153 TVFRYNNRE-----RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKT-  226 (276)
T ss_dssp             EECEETTEE-----CCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCT-
T ss_pred             cccCCCcch-----hcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhccc-
Confidence            866433211     12334679999976 87  333 477899999999999999999999764332222222221100 


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                     ...  .....       -..+.++...|++.+|++|||+.|+++
T Consensus       227 ---------------~~~--~~~~~-------~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          227 ---------------YLN--PWKKI-------DSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             ---------------TST--TGGGS-------CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ---------------ccC--chhhc-------CHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence                           000  00001       112345777999999999999999875

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.80  E-value=6.1e-20  Score=181.78  Aligned_cols=163  Identities=18%  Similarity=0.198  Sum_probs=118.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee---CCCCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL---DYDMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl---d~~~~~kl~D  449 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+.+++.++                  |+||++   +.++.+||+|
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~D  152 (277)
T 3f3z_A           76 EDNTDIYLVMELCTGGELFERVVHK---RVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLID  152 (277)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECC
T ss_pred             ecCCeEEEEEeccCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEe
Confidence            3456789999999999999998753   358888888888877                  999999   8889999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ||+++......        ......||+.|+| |. .+.++.++|||||||+++||+||+.||......           
T Consensus       153 fg~~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-----------  213 (277)
T 3f3z_A          153 FGLAARFKPGK--------MMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDS-----------  213 (277)
T ss_dssp             CTTCEECCTTS--------CBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-----------
T ss_pred             cccceeccCcc--------chhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHH-----------
Confidence            99998765432        1334679999977 87 667899999999999999999999999753211           


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                            +........... .+..      ........+.++...|++.+|++|||+.|+++
T Consensus       214 ------~~~~~~~~~~~~-~~~~------~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          214 ------EVMLKIREGTFT-FPEK------DWLNVSPQAESLIRRLLTKSPKQRITSLQALE  261 (277)
T ss_dssp             ------HHHHHHHHCCCC-CCHH------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ------HHHHHHHhCCCC-CCch------hhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                  111111111110 0000      00011223446777999999999999999985

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.80  E-value=1.7e-20  Score=189.54  Aligned_cols=185  Identities=17%  Similarity=0.217  Sum_probs=114.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC---eeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT---AYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~---~kl~Df  450 (614)
                      .++..++|||||++|+|.+++...   ..+++..+..++.++                  |+||+++.++.   +||+||
T Consensus        82 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Df  158 (316)
T 2ac3_A           82 EEDRFYLVFEKMRGGSILSHIHKR---RHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDF  158 (316)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCT
T ss_pred             eCCEEEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEc
Confidence            356789999999999999999753   358888888887777                  99999998776   999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--c-----CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-----ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-----~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      |+++...................+||+.|+| |.  .     ..++.++|||||||+++||+||+.||.........   
T Consensus       159 g~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~---  235 (316)
T 2ac3_A          159 DLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCG---  235 (316)
T ss_dssp             TCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSC---
T ss_pred             cCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccc---
Confidence            9998664322110001112234579999977 86  2     45889999999999999999999999764322110   


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      |............+...+.......+..      .....-..+.++...|++.+|++|||+.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          236 WDRGEACPACQNMLFESIQEGKYEFPDK------DWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             C----CCHHHHHHHHHHHHHCCCCCCHH------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ccccccchhHHHHHHHHHhccCcccCch------hcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            1110000011111222222211111100      00111233456778999999999999999986

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.80  E-value=9.9e-20  Score=187.58  Aligned_cols=110  Identities=24%  Similarity=0.284  Sum_probs=91.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC------------
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY------------  441 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~------------  441 (614)
                      ..+..++||||+ +|+|.+++.... ...+++.....++.++                  |+|||++.            
T Consensus       107 ~~~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~  184 (360)
T 3llt_A          107 YYDHMCLIFEPL-GPSLYEIITRNN-YNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRR  184 (360)
T ss_dssp             ETTEEEEEECCC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEEC
T ss_pred             ECCeeEEEEcCC-CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhc
Confidence            356789999999 899999997643 3358888888887777                  99999986            


Q ss_pred             -------------CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh
Q 046036          442 -------------DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT  505 (614)
Q Consensus       442 -------------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt  505 (614)
                                   ++.+||+|||+++.....          .....||+.|+| |.  ...++.++|||||||++|||+|
T Consensus       185 ~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  254 (360)
T 3llt_A          185 VTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----------HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYT  254 (360)
T ss_dssp             TTTCCEEEEEEESCCCEEECCCTTCEETTSC----------CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCEEEEeccCceecCCC----------CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHH
Confidence                         789999999999865432          224679999977 87  6678999999999999999999


Q ss_pred             CCCCCCcc
Q 046036          506 GKRPTDEM  513 (614)
Q Consensus       506 G~~p~~~~  513 (614)
                      |+.||...
T Consensus       255 g~~pf~~~  262 (360)
T 3llt_A          255 GSLLFRTH  262 (360)
T ss_dssp             SSCSCCCS
T ss_pred             CCCCCCCC
Confidence            99999753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=1.6e-20  Score=184.11  Aligned_cols=170  Identities=22%  Similarity=0.285  Sum_probs=114.6

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      +.++..+++++|.+++..  .+..+++|++|++++|+++ .+| .   +..++ +|++|+|++|++++..+  +..+++|
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~---l~~l~-~L~~L~L~~N~i~~~~~--l~~l~~L   87 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-G---MQFFT-NLKELHLSHNQISDLSP--LKDLTKL   87 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-T---GGGCT-TCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-H---HhhCC-CCCEEECCCCccCCChh--hccCCCC
Confidence            556677777777777443  5677778888888888777 344 3   56666 77788888888774433  7777788


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCC
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL  169 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  169 (614)
                      ++|+|++|++++ +|.. .. ++|+.|+            |++|++++.  +.+..+++|++|+|++|++++. + .+..
T Consensus        88 ~~L~L~~N~l~~-l~~~-~~-~~L~~L~------------L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~  148 (263)
T 1xeu_A           88 EELSVNRNRLKN-LNGI-PS-ACLSRLF------------LDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGF  148 (263)
T ss_dssp             CEEECCSSCCSC-CTTC-CC-SSCCEEE------------CCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGG
T ss_pred             CEEECCCCccCC-cCcc-cc-CcccEEE------------ccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHcc
Confidence            888888887774 3322 22 5565555            777777753  3477777777777777777743 3 4666


Q ss_pred             CCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCC
Q 046036          170 FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDE  210 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  210 (614)
                      +++|+.|++++|.|++.  ..+..+++|+.|++++|.++..
T Consensus       149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            77777777777777654  4566677777777777776644

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.80  E-value=8.6e-20  Score=186.83  Aligned_cols=171  Identities=16%  Similarity=0.131  Sum_probs=111.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------------------------------------CCcccCHHHHHHHHhhC
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------------------------------------ATRRLDLAEGLKIAVDI  433 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------------------------------~~~~l~~~~~~~ia~~i  433 (614)
                      ..++..++|||||++|+|.+++....                                     ....+++.....++.++
T Consensus        98 ~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  177 (345)
T 3hko_A           98 EDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQI  177 (345)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence            45677899999999999999985210                                     01123455555566555


Q ss_pred             ------------------CCceeeCCCC--CeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc----cCCCC
Q 046036          434 ------------------PSNVLLDYDM--TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW----VARYQ  488 (614)
Q Consensus       434 ------------------~~NILld~~~--~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~----~~~~~  488 (614)
                                        |+||+++.++  .+||+|||+++.+......   .........||+.|+| |.    ...++
T Consensus       178 ~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~  254 (345)
T 3hko_A          178 FSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG---EYYGMTTKAGTPYFVAPEVLNTTNESYG  254 (345)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC-----------CCCGGGCCHHHHTCSSSCCC
T ss_pred             HHHHHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCcc---ccccccccCCCccccCchhhccCCCCCC
Confidence                              9999998766  8999999999876432211   0112345679999977 86    26788


Q ss_pred             ccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHH
Q 046036          489 HKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRI  568 (614)
Q Consensus       489 ~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i  568 (614)
                      .++|||||||+++||+||+.||.....                 .+.....+..............       ...+.++
T Consensus       255 ~~~DiwslG~il~el~~g~~pf~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l  310 (345)
T 3hko_A          255 PKCDAWSAGVLLHLLLMGAVPFPGVND-----------------ADTISQVLNKKLCFENPNYNVL-------SPLARDL  310 (345)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSH-----------------HHHHHHHHHCCCCTTSGGGGGS-------CHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCCCh-----------------HHHHHHHHhcccccCCcccccC-------CHHHHHH
Confidence            999999999999999999999975321                 1122222222211111111111       1234456


Q ss_pred             hhccCCCCccCCCCHHHHHH
Q 046036          569 GIASLTETPNERMGVREMVM  588 (614)
Q Consensus       569 ~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ...|++.+|++||++.|+++
T Consensus       311 i~~~l~~~p~~Rps~~~~l~  330 (345)
T 3hko_A          311 LSNLLNRNVDERFDAMRALQ  330 (345)
T ss_dssp             HHHHSCSCTTTSCCHHHHHH
T ss_pred             HHHHcCCChhHCCCHHHHhc
Confidence            77999999999999999986

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.80  E-value=7.9e-20  Score=187.78  Aligned_cols=166  Identities=20%  Similarity=0.227  Sum_probs=116.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus       129 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~  205 (355)
T 1vzo_A          129 QTETKLHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGL  205 (355)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             eeCceEEEEeecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCC
Confidence            3456789999999999999999753   358888888877766                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c---CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V---ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~---~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ++.......      ......+||+.|+| |+ .   ..++.++|||||||++|||+||+.||.......          
T Consensus       206 a~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~----------  269 (355)
T 1vzo_A          206 SKEFVADET------ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN----------  269 (355)
T ss_dssp             EEECCGGGG------GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC----------
T ss_pred             CeecccCCC------CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc----------
Confidence            987643321      22345689999977 87 2   347889999999999999999999997532211          


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVME  589 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~~  589 (614)
                         ...++......... ..+.   ..       ...+.++...|++.+|++||     ++.|+++.
T Consensus       270 ---~~~~~~~~~~~~~~-~~~~---~~-------~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h  322 (355)
T 1vzo_A          270 ---SQAEISRRILKSEP-PYPQ---EM-------SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  322 (355)
T ss_dssp             ---CHHHHHHHHHHCCC-CCCT---TS-------CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             ---hHHHHHHHHhccCC-CCCc---cc-------CHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence               11112222221111 1111   11       11234567799999999999     99999864

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.80  E-value=2e-20  Score=186.51  Aligned_cols=164  Identities=18%  Similarity=0.201  Sum_probs=116.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC--------
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT--------  444 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~--------  444 (614)
                      ..++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.        
T Consensus        82 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~  159 (289)
T 4fvq_A           82 VCGDENILVQEFVKFGSLDTYLKKN--KNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPF  159 (289)
T ss_dssp             CCTTCCEEEEECCTTCBHHHHHHHT--GGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccce
Confidence            3456679999999999999999864  3348888888888777                  99999998887        


Q ss_pred             eeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchH
Q 046036          445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL  520 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l  520 (614)
                      +|++|||+++....           .....||+.|+| |.  . ..++.++|||||||+++||+||..|+....... ..
T Consensus       160 ~kl~Dfg~~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~-~~  227 (289)
T 4fvq_A          160 IKLSDPGISITVLP-----------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQ-RK  227 (289)
T ss_dssp             EEECCCCSCTTTSC-----------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-HH
T ss_pred             eeeccCcccccccC-----------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchH-HH
Confidence            99999999865432           233568999977 87  3 678999999999999999999655543211110 00


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      .                ..........+..           ...+.+++..|++.+|++|||+.|+++.|+++..
T Consensus       228 ~----------------~~~~~~~~~~~~~-----------~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~  275 (289)
T 4fvq_A          228 L----------------QFYEDRHQLPAPK-----------AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT  275 (289)
T ss_dssp             H----------------HHHHTTCCCCCCS-----------SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred             H----------------HHhhccCCCCCCC-----------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            0                0111100000000           0123356679999999999999999999987754

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.79  E-value=1.3e-20  Score=192.79  Aligned_cols=163  Identities=20%  Similarity=0.287  Sum_probs=109.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||| +.+|+|.+++...   ..+++..+..++.++                  |+|||++ ++.+||+|||+
T Consensus        79 ~~~~~~~lv~e-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~  153 (343)
T 3dbq_A           79 ITDQYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGI  153 (343)
T ss_dssp             ECSSEEEEEEC-CCSEEHHHHHHHS---CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSS
T ss_pred             eeCCEEEEEEe-CCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeeccc
Confidence            34567899999 5678999999853   358888888888777                  9999997 57899999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--c-----------CCCCccCceeehhHHHHHHHhCCCCCCcccccCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-----------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL  518 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-----------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~  518 (614)
                      ++........     ......+||++|+| |+  .           ..++.++|||||||++|||++|+.||....... 
T Consensus       154 a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-  227 (343)
T 3dbq_A          154 ANQMQPDTTS-----VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-  227 (343)
T ss_dssp             SCCC-----------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-
T ss_pred             ccccCccccc-----ccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHH-
Confidence            9877544321     12345689999977 87  2           578899999999999999999999997532211 


Q ss_pred             hHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          519 SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       519 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                     ..+...+...........         ....+.+++..|++.+|++||||.|+++
T Consensus       228 ---------------~~~~~~~~~~~~~~~~~~---------~~~~l~~li~~~L~~dp~~Rpt~~e~l~  273 (343)
T 3dbq_A          228 ---------------SKLHAIIDPNHEIEFPDI---------PEKDLQDVLKCCLKRDPKQRISIPELLA  273 (343)
T ss_dssp             ---------------HHHHHHHCTTSCCCCCCC---------SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ---------------HHHHHHhcCCcccCCccc---------CCHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence                           111111111111000000         0113346777999999999999999985

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.79  E-value=6.2e-20  Score=197.67  Aligned_cols=165  Identities=24%  Similarity=0.310  Sum_probs=119.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++.... ...+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus       254 ~~~~~l~lVmEy~~gg~L~~~l~~~~-~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGl  332 (576)
T 2acx_A          254 ETKDALCLVLTLMNGGDLKFHIYHMG-QAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGL  332 (576)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHSSS-SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             eeCCEEEEEEEcCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEeccc
Confidence            45677899999999999999997643 3358898888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......        .....+||++|+| |.  ...++.++|||||||++|||++|+.||........           
T Consensus       333 a~~~~~~~--------~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~-----------  393 (576)
T 2acx_A          333 AVHVPEGQ--------TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIK-----------  393 (576)
T ss_dssp             CEECCTTC--------CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCC-----------
T ss_pred             ceecccCc--------cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchh-----------
Confidence            98765432        1334689999977 87  56789999999999999999999999976322110           


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~  588 (614)
                         .+.+...+.......+.   .+.       ..+.++...|++.+|++||     +++||++
T Consensus       394 ---~~~i~~~i~~~~~~~p~---~~s-------~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          394 ---REEVERLVKEVPEEYSE---RFS-------PQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             ---HHHHHHHHHHCCCCCCT---TSC-------HHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             ---HHHHHHHhhcccccCCc---cCC-------HHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence               11111111111110110   111       1233566789999999999     7788874

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.79  E-value=6.1e-20  Score=187.87  Aligned_cols=157  Identities=21%  Similarity=0.231  Sum_probs=113.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||++ |+|.+++...  ...++|..+..++.++                  |+|||++.++.+||+|||++
T Consensus       125 ~~~~~~lv~e~~~-g~l~~~l~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a  201 (348)
T 1u5q_A          125 REHTAWLVMEYCL-GSASDLLEVH--KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSA  201 (348)
T ss_dssp             ETTEEEEEEECCS-EEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTC
T ss_pred             ECCeEEEEEecCC-CCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCc
Confidence            4567899999998 6898888642  2358898888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +.....           ....||+.|+| |.     ...++.++|||||||+++||+||+.||.....            
T Consensus       202 ~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~------------  258 (348)
T 1u5q_A          202 SIMAPA-----------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA------------  258 (348)
T ss_dssp             BSSSSB-----------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH------------
T ss_pred             eecCCC-----------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh------------
Confidence            866432           23579999977 86     35788999999999999999999999865321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+.......... . ....+.    +   .+.++...|++.+|++|||+.|+++
T Consensus       259 -----~~~~~~~~~~~~~~-~-~~~~~~----~---~l~~li~~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          259 -----MSALYHIAQNESPA-L-QSGHWS----E---YFRNFVDSCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             -----HHHHHHHHHSCCCC-C-CCTTSC----H---HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -----HHHHHHHHhcCCCC-C-CCCCCC----H---HHHHHHHHHcccChhhCcCHHHHhh
Confidence                 11111111111100 0 001111    1   2335667999999999999999985

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.79  E-value=1.5e-20  Score=190.73  Aligned_cols=192  Identities=14%  Similarity=0.143  Sum_probs=115.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||++ |+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        70 ~~~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  146 (324)
T 3mtl_A           70 HTEKSLTLVFEYLD-KDLKQYLDDC--GNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGL  146 (324)
T ss_dssp             ECSSCEEEEEECCS-EEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSE
T ss_pred             eeCCEEEEEecccc-cCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcc
Confidence            34567899999998 5999998754  2358888888777776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh-
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA-  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~-  527 (614)
                      ++......       .......||++|+| |.   ...++.++||||+||+++||+||+.||........ +....+.. 
T Consensus       147 a~~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~i~~~~~  218 (324)
T 3mtl_A          147 ARAKSIPT-------KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQ-LHFIFRILG  218 (324)
T ss_dssp             EECC-------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHC
T ss_pred             cccccCCc-------cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHhC
Confidence            98655332       12334678999977 86   35689999999999999999999999976432211 11111111 


Q ss_pred             --CCCChHHHHH-HHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHhH
Q 046036          528 --LPESVMELVY-SRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM--EMNVIK  594 (614)
Q Consensus       528 --~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i~  594 (614)
                        .+........ ........+..... .........-..+.++...|++.+|++|||++|+++  .+..+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  289 (324)
T 3mtl_A          219 TPTEETWPGILSNEEFKTYNYPKYRAE-ALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLG  289 (324)
T ss_dssp             CCCTTTSTTGGGCHHHHHTCCCCCCCC-CHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGC
T ss_pred             CCChHhchhhhcchhhcccccccccch-hhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcc
Confidence              0111110000 00000000000000 000000111223456778999999999999999986  444443

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.79  E-value=1.3e-19  Score=183.98  Aligned_cols=160  Identities=17%  Similarity=0.182  Sum_probs=111.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~  167 (327)
T 3a62_A           91 QTGGKLYLILEYLSGGELFMQLERE---GIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGL  167 (327)
T ss_dssp             ECSSCEEEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSC
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCc
Confidence            3456789999999999999999743   247777777776666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ......+||+.|+| |.  ...++.++|||||||++|||++|+.||.....              
T Consensus       168 ~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--------------  226 (327)
T 3a62_A          168 CKESIHDG-------TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR--------------  226 (327)
T ss_dssp             C-----------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--------------
T ss_pred             ccccccCC-------ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH--------------
Confidence            98654332       12334689999977 87  66789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~  588 (614)
                         .+.+...+...... |.   ...       ..+.++...|++.+|++||     ++.|+++
T Consensus       227 ---~~~~~~i~~~~~~~-p~---~~~-------~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          227 ---KKTIDKILKCKLNL-PP---YLT-------QEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             ---HHHHHHHHHTCCCC-CT---TSC-------HHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             ---HHHHHHHHhCCCCC-CC---CCC-------HHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence               11222222221111 11   111       1233566789999999999     6777765

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.79  E-value=1.4e-19  Score=184.89  Aligned_cols=112  Identities=21%  Similarity=0.317  Sum_probs=93.2

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+
T Consensus        80 ~~~~~~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~  156 (345)
T 3a8x_A           80 QTESRLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM  156 (345)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGG
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccc
Confidence            3456789999999999999999743   358888888877776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      ++......       ......+||+.|+| |.  ...++.++||||+||++|||++|+.||..
T Consensus       157 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  212 (345)
T 3a8x_A          157 CKEGLRPG-------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  212 (345)
T ss_dssp             CBCSCCTT-------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             cccccCCC-------CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCC
Confidence            98643322       12445789999977 87  66789999999999999999999999964

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.79  E-value=1.4e-19  Score=179.74  Aligned_cols=163  Identities=20%  Similarity=0.238  Sum_probs=116.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC---eeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT---AYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~---~kl~D  449 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.   +||+|
T Consensus        75 ~~~~~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~D  151 (284)
T 3kk8_A           75 QEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLAD  151 (284)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECC
T ss_pred             EcCCEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEee
Confidence            3456789999999999999998753   358888888887777                  99999987655   99999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||++.......        ......||++|+| |.  ...++.++||||+||+++||++|+.||......          
T Consensus       152 fg~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----------  213 (284)
T 3kk8_A          152 FGLAIEVNDSE--------AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH----------  213 (284)
T ss_dssp             CTTCEECCSSC--------BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH----------
T ss_pred             ceeeEEcccCc--------cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh----------
Confidence            99998765432        1234679999977 87  667899999999999999999999999653211          


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             +....................       ...+.++...|++.+|++|||+.|+++
T Consensus       214 -------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          214 -------RLYAQIKAGAYDYPSPEWDTV-------TPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             -------HHHHHHHHTCCCCCTTTTTTS-------CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             -------HHHHHHHhccccCCchhhccc-------CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence                   111111111111111110111       122345677999999999999999986

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.79  E-value=7.3e-20  Score=190.95  Aligned_cols=116  Identities=22%  Similarity=0.278  Sum_probs=94.4

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..|+|||||++|+|.+++...  +..+++..+..++.++                  |+|||+|.++++||+|||
T Consensus       130 ~~~~~~~~lVmE~~~gg~L~~~l~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFG  207 (412)
T 2vd5_A          130 FQDENYLYLVMEYYVGGDLLTLLSKF--GERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFG  207 (412)
T ss_dssp             EECSSEEEEEECCCCSCBHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             EeeCCEEEEEEcCCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeech
Confidence            34567789999999999999999753  2358888777777666                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-c--------CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V--------ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~--------~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +++.......      ......+||++|+| |+ .        ..++.++|||||||++|||+||+.||...
T Consensus       208 la~~~~~~~~------~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  273 (412)
T 2vd5_A          208 SCLKLRADGT------VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD  273 (412)
T ss_dssp             TCEECCTTSC------EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             hheeccCCCc------cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC
Confidence            9987654321      12334689999977 87 2        36899999999999999999999999753

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.79  E-value=6.8e-20  Score=190.58  Aligned_cols=163  Identities=21%  Similarity=0.315  Sum_probs=110.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||| +.+|+|.+++....   .+++..+..++.++                  |+|||++ ++.+||+|||+
T Consensus       126 ~~~~~~~lv~E-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~  200 (390)
T 2zmd_A          126 ITDQYIYMVME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGI  200 (390)
T ss_dssp             ECSSEEEEEEE-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSS
T ss_pred             ecCCEEEEEEe-cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCc
Confidence            34567899999 67889999998542   57888888887777                  9999996 57899999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-c------------CCCCccCceeehhHHHHHHHhCCCCCCcccccCc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL  518 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~  518 (614)
                      ++.+......     ......+||+.|+| |+ .            ..++.++|||||||++|||++|+.||......  
T Consensus       201 a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~--  273 (390)
T 2zmd_A          201 ANQMQPDTTS-----VVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ--  273 (390)
T ss_dssp             SCCC--------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--
T ss_pred             cccccCCCcc-----ccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH--
Confidence            9877543221     12334689999977 87 2            26889999999999999999999999753211  


Q ss_pred             hHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          519 SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       519 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                    ...+...+............         ...+.+++..|++.+|++|||+.||++
T Consensus       274 --------------~~~~~~~~~~~~~~~~~~~~---------~~~~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          274 --------------ISKLHAIIDPNHEIEFPDIP---------EKDLQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             --------------HHHHHHHHCTTSCCCCCCCS---------CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             --------------HHHHHHHhCccccCCCCccc---------hHHHHHHHHHHcccChhhCCCHHHHhh
Confidence                          01111111111111000000         113446777999999999999999985

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.79  E-value=4.4e-20  Score=190.24  Aligned_cols=110  Identities=24%  Similarity=0.356  Sum_probs=88.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGl  452 (614)
                      .++..++||||+++|+|.+++...   ..+++..+.+++.++                   |+||+++.++.+||+|||+
T Consensus       102 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  178 (360)
T 3eqc_A          102 SDGEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV  178 (360)
T ss_dssp             ETTEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred             ECCEEEEEEECCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCC
Confidence            356789999999999999999753   247777777766555                   9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++......         .....||+.|+| |.  ...++.++|||||||+++||+||+.||...
T Consensus       179 ~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          179 SGQLIDSM---------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             CHHHHHHC-------------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             Cccccccc---------ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            97654321         234679999977 87  667899999999999999999999999753

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.79  E-value=1.8e-19  Score=193.53  Aligned_cols=116  Identities=22%  Similarity=0.313  Sum_probs=96.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      ..++..++|||||++|+|.+++.... ....+++.....++.++                  |+|||++.++.+||+|||
T Consensus       255 ~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFG  334 (543)
T 3c4z_A          255 ETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLG  334 (543)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             eeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecc
Confidence            44667899999999999999997543 23468888888777776                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +++.+.....       .....+||+.|+| |.  ...++.++||||+||++|||+||+.||...
T Consensus       335 la~~~~~~~~-------~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~  392 (543)
T 3c4z_A          335 LAVELKAGQT-------KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR  392 (543)
T ss_dssp             TCEECCTTCC-------CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred             eeeeccCCCc-------ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence            9987654321       2334689999977 87  667899999999999999999999999753

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.79  E-value=1.5e-19  Score=179.59  Aligned_cols=170  Identities=17%  Similarity=0.202  Sum_probs=118.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC----Ceeec
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM----TAYVG  448 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~----~~kl~  448 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++    .+||+
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~  154 (283)
T 3bhy_A           78 ENKTDVVLILELVSGGELFDFLAEK---ESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLI  154 (283)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEEC
T ss_pred             cCCCeEEEEEeecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEE
Confidence            3456789999999999999999743   358898888888877                  9999999877    89999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++......        ......||+.|+| |.  ...++.++||||||++++||++|+.||......         
T Consensus       155 dfg~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---------  217 (283)
T 3bhy_A          155 DFGIAHKIEAGN--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ---------  217 (283)
T ss_dssp             CCTTCEECC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---------
T ss_pred             ecccceeccCCC--------cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH---------
Confidence            999998765432        1234679999977 87  567899999999999999999999999753211         


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHhHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM--EMNVIKE  595 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i~~  595 (614)
                              +.............    ..   ........+.++...|++.+|++|||+.|+++  .++.++.
T Consensus       218 --------~~~~~~~~~~~~~~----~~---~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          218 --------ETLTNISAVNYDFD----EE---YFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             --------HHHHHHHTTCCCCC----HH---HHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred             --------HHHHHhHhcccCCc----ch---hcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence                    11111111100000    00   00111223456778999999999999999996  4555543

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.79  E-value=9.8e-20  Score=185.61  Aligned_cols=176  Identities=20%  Similarity=0.183  Sum_probs=109.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeCCCCCeeecccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld~~~~~kl~DfG  451 (614)
                      .....++||||++ |+|.+++........++|..+..++.++                    |+|||++.++.+||+|||
T Consensus       105 ~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg  183 (337)
T 3ll6_A          105 GQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFG  183 (337)
T ss_dssp             SSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCT
T ss_pred             CCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCc
Confidence            3456799999997 7999998653233468999888887766                    899999999999999999


Q ss_pred             cccccCCCCCCCCCC-----CcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchH
Q 046036          452 LARFLPTNVTNPMKG-----QSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL  520 (614)
Q Consensus       452 la~~~~~~~~~~~~~-----~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l  520 (614)
                      +++............     ........||+.|+| |.     ...++.++|||||||++|||+||+.||......    
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~----  259 (337)
T 3ll6_A          184 SATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL----  259 (337)
T ss_dssp             TCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----------
T ss_pred             cceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH----
Confidence            998776432210000     001124569999976 75     345788999999999999999999999642111    


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhh
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLL  598 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~  598 (614)
                                   +......    ...+...         ....+.+++..|++.+|++|||+.|+++.|+.+.....
T Consensus       260 -------------~~~~~~~----~~~~~~~---------~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~  311 (337)
T 3ll6_A          260 -------------RIVNGKY----SIPPHDT---------QYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN  311 (337)
T ss_dssp             -------------------C----CCCTTCC---------SSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             -------------HhhcCcc----cCCcccc---------cchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence                         0010100    0000000         00113356779999999999999999999999887543

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.79  E-value=1.6e-19  Score=179.02  Aligned_cols=159  Identities=19%  Similarity=0.218  Sum_probs=113.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        79 ~~~~~~~lv~e~~~~~~l~~~l~~~---~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~  155 (279)
T 3fdn_A           79 HDATRVYLILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW  155 (279)
T ss_dssp             ECSSEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCE
T ss_pred             ecCCEEEEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccc
Confidence            3456789999999999999999743   358888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......         .....||+.|+| |.  ...++.++||||+|++++||++|+.||.....              
T Consensus       156 ~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--------------  212 (279)
T 3fdn_A          156 SVHAPSSR---------RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY--------------  212 (279)
T ss_dssp             ESCC-----------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH--------------
T ss_pred             cccCCccc---------ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH--------------
Confidence            86544321         234679999977 87  66778999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                         .+.......... ..+..   .       ...+.++...|++.+|++|||+.|+++.
T Consensus       213 ---~~~~~~~~~~~~-~~~~~---~-------~~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          213 ---QETYKRISRVEF-TFPDF---V-------TEGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             ---HHHHHHHHHTCC-CCCTT---S-------CHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             ---HHHHHHHHhCCC-CCCCc---C-------CHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence               111111111111 00100   0       1123356779999999999999999974

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.79  E-value=1.4e-20  Score=195.10  Aligned_cols=158  Identities=12%  Similarity=0.130  Sum_probs=111.9

Q ss_pred             eeEEecccCCCchhhhccCCC----CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          396 KALAFEFMPNGSLESWLHPNE----ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~----~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++||||+ +|+|.+++...+    ....++|..+.+|+.++                  |+|||++.++.+||+|||++
T Consensus       175 ~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a  253 (377)
T 3byv_A          175 RFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL  253 (377)
T ss_dssp             EEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGC
T ss_pred             EEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEechhh
Confidence            68999999 689999997432    12345678888787777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cC-----------CCCccCceeehhHHHHHHHhCCCCCCcccccCch
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-----------RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLS  519 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-----------~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~  519 (614)
                      +....          .....+| +.|+| |.  ..           .++.++|||||||++|||+||+.||.........
T Consensus       254 ~~~~~----------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~  322 (377)
T 3byv_A          254 VRDGA----------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGS  322 (377)
T ss_dssp             EETTC----------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCS
T ss_pred             eecCC----------cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccch
Confidence            85432          1334677 99977 87  44           7999999999999999999999999753221100


Q ss_pred             HHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHhHHHh
Q 046036          520 LHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM--EMNVIKEVL  597 (614)
Q Consensus       520 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i~~~~  597 (614)
                        .                .+.....              .....+.+++..|++.+|++|||+.|+++  .++++++..
T Consensus       323 --~----------------~~~~~~~--------------~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~  370 (377)
T 3byv_A          323 --E----------------WIFRSCK--------------NIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTEL  370 (377)
T ss_dssp             --G----------------GGGSSCC--------------CCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHHHH
T ss_pred             --h----------------hhhhhcc--------------CCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHHHHH
Confidence              0                0000000              00112345677999999999999999996  566665543

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.79  E-value=1.1e-19  Score=186.99  Aligned_cols=164  Identities=17%  Similarity=0.208  Sum_probs=106.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC--eeecccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT--AYVGDFG  451 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~--~kl~DfG  451 (614)
                      .++..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++.++.  +||+|||
T Consensus        87 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg  163 (361)
T 3uc3_A           87 TPTHLAIIMEYASGGELYERICNA---GRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFG  163 (361)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCC
T ss_pred             eCCEEEEEEEeCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecC
Confidence            466789999999999999999743   358888888887777                  99999987765  9999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCcc-CceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHK-GKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k-~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +++......        ......||++|+| |.  ...++.+ +||||+||++|||++|+.||.......          
T Consensus       164 ~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~----------  225 (361)
T 3uc3_A          164 YSKSSVLHS--------QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR----------  225 (361)
T ss_dssp             CC-----------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC----------
T ss_pred             ccccccccC--------CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH----------
Confidence            997543321        2334679999977 87  4555444 899999999999999999997532211          


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .....+...+..........  ..       ...+.++...|++.+|++|||+.|+++
T Consensus       226 ---~~~~~~~~~~~~~~~~~~~~--~~-------s~~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          226 ---DYRKTIQRILSVKYSIPDDI--RI-------SPECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             ---CHHHHHHHHHTTCCCCCTTS--CC-------CHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             ---HHHHHHHHHhcCCCCCCCcC--CC-------CHHHHHHHHHHccCChhHCcCHHHHHh
Confidence               11222222222211111100  01       122345777999999999999999986

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.79  E-value=9.7e-20  Score=184.11  Aligned_cols=115  Identities=26%  Similarity=0.379  Sum_probs=91.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC---CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE---ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~---~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~D  449 (614)
                      ..++..++||||++ |+|.+++....   ....+++..+..++.++                  |+|||++.++.+||+|
T Consensus        73 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~D  151 (317)
T 2pmi_A           73 HTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGD  151 (317)
T ss_dssp             CCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECC
T ss_pred             EECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECc
Confidence            34567899999999 59999986421   22358888887777666                  9999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ||+++.......       ......||+.|+| |.  . ..++.++|||||||+++||+||+.||...
T Consensus       152 fg~~~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  212 (317)
T 2pmi_A          152 FGLARAFGIPVN-------TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT  212 (317)
T ss_dssp             CSSCEETTSCCC-------CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CccceecCCCcc-------cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999987654321       1334678999977 87  2 46899999999999999999999999754

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.79  E-value=2e-19  Score=186.85  Aligned_cols=109  Identities=25%  Similarity=0.239  Sum_probs=89.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeC--CCCCeeeccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLD--YDMTAYVGDF  450 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld--~~~~~kl~Df  450 (614)
                      ++..++||||++ |+|.+++.... ...+++..+..++.++                    |+|||++  .++.+||+||
T Consensus       128 ~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DF  205 (382)
T 2vx3_A          128 RNHLCLVFEMLS-YNLYDLLRNTN-FRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDF  205 (382)
T ss_dssp             TTEEEEEEECCC-CBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCC
T ss_pred             CCceEEEEecCC-CCHHHHHhhcC-cCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEec
Confidence            567899999997 59999997642 2358888888877766                    9999994  5788999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |+++.....          .....||+.|+| |.  ...++.++|||||||+++||+||+.||...
T Consensus       206 G~a~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          206 GSSCQLGQR----------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             TTCEETTCC----------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCceecccc----------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999876532          234679999977 87  567899999999999999999999999864

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.79  E-value=1.7e-19  Score=193.77  Aligned_cols=168  Identities=16%  Similarity=0.193  Sum_probs=120.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC---CCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD---MTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~---~~~kl~D  449 (614)
                      ..++..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++..   +.+||+|
T Consensus       106 ~~~~~~~lv~e~~~~g~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  182 (494)
T 3lij_A          106 EDKRNYYLVMECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVD  182 (494)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred             EeCCEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEE
Confidence            4566789999999999999998743   358888888887777                  999999764   5599999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ||+++......        .....+||+.|+| |. ...++.++||||+||++|||++|+.||.....            
T Consensus       183 fG~a~~~~~~~--------~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~------------  242 (494)
T 3lij_A          183 FGLSAVFENQK--------KMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTD------------  242 (494)
T ss_dssp             CTTCEECBTTB--------CBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH------------
T ss_pred             CCCCeECCCCc--------cccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCH------------
Confidence            99998765432        2344679999977 87 77899999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHh
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM--EMNVI  593 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i  593 (614)
                           .+.+...................       ..+.++...|++.+|++|||+.|+++  .+++.
T Consensus       243 -----~~~~~~i~~~~~~~~~~~~~~~s-------~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~  298 (494)
T 3lij_A          243 -----QEILRKVEKGKYTFDSPEWKNVS-------EGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM  298 (494)
T ss_dssp             -----HHHHHHHHHTCCCCCSGGGTTSC-------HHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred             -----HHHHHHHHhCCCCCCchhcccCC-------HHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence                 12222222222211111111111       22345667999999999999999985  35443

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.79  E-value=5.7e-20  Score=183.71  Aligned_cols=165  Identities=19%  Similarity=0.229  Sum_probs=113.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC-CCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY-DMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~-~~~~kl~DfGl  452 (614)
                      ..+..++||||+++|+|.+++........+++..+..++.++                  |+||+++. ++.+||+|||+
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~  169 (295)
T 2clq_A           90 ENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGT  169 (295)
T ss_dssp             ETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTT
T ss_pred             eCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeeccc
Confidence            356789999999999999999865434456777777766665                  99999997 89999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--c--CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ++.......       ......||+.|+| |.  .  ..++.++|||||||++|||+||+.||........         
T Consensus       170 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---------  233 (295)
T 2clq_A          170 SKRLAGINP-------CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQA---------  233 (295)
T ss_dssp             CEESCC------------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHH---------
T ss_pred             ccccCCCCC-------cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhH---------
Confidence            987654321       1234679999977 87  2  2478999999999999999999999964211100         


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                            ..............+   ...       ...+.++...|++.+|++||++.|++.
T Consensus       234 ------~~~~~~~~~~~~~~~---~~~-------~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          234 ------AMFKVGMFKVHPEIP---ESM-------SAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             ------HHHHHHHHCCCCCCC---TTS-------CHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             ------HHHhhcccccccccc---ccC-------CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                  000011111100001   011       123345677999999999999999874

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.79  E-value=1.4e-19  Score=179.37  Aligned_cols=160  Identities=19%  Similarity=0.287  Sum_probs=100.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        82 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~  159 (278)
T 3cok_A           82 DSNYVYLVLEMCHNGEMNRYLKNR--VKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLA  159 (278)
T ss_dssp             CSSEEEEEEECCTTEEHHHHHHTC--SSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTC
T ss_pred             cCCeEEEEEecCCCCcHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecce
Confidence            456789999999999999999854  2458888888888877                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.......       ......||+.|+| |.  ...++.++|||||||+++||+||+.||........            
T Consensus       160 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------------  220 (278)
T 3cok_A          160 TQLKMPHE-------KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT------------  220 (278)
T ss_dssp             EECC-----------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC--------------
T ss_pred             eeccCCCC-------cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH------------
Confidence            87653321       1234679999976 87  56788999999999999999999999975321110            


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .......... .+   ...       ...+.++...|++.+|++|||+.|+++
T Consensus       221 -----~~~~~~~~~~-~~---~~~-------~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          221 -----LNKVVLADYE-MP---SFL-------SIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             --------CCSSCCC-CC---TTS-------CHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             -----HHHHhhcccC-Cc---ccc-------CHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence                 0000000000 00   001       112345777999999999999999885

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.79  E-value=1.6e-19  Score=193.77  Aligned_cols=163  Identities=19%  Similarity=0.239  Sum_probs=119.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee---CCCCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL---DYDMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl---d~~~~~kl~D  449 (614)
                      ...+..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||+   +.++.+||+|
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  172 (484)
T 3nyv_A           96 EDKGYFYLVGEVYTGGELFDEIISR---KRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIID  172 (484)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHTC---SCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECC
T ss_pred             EeCCEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEe
Confidence            3466789999999999999999754   358888888888877                  999999   5678999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ||+++......        .....+||++|+| |. .+.++.++||||+||++|||++|+.||.....            
T Consensus       173 fg~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~------------  232 (484)
T 3nyv_A          173 FGLSTHFEASK--------KMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANE------------  232 (484)
T ss_dssp             TTHHHHBCCCC--------SHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH------------
T ss_pred             eeeeEEccccc--------ccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCH------------
Confidence            99998765432        2345789999977 87 66799999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+............+......       ..+.++...|++.+|++|||+.|+++
T Consensus       233 -----~~~~~~i~~~~~~~~~~~~~~~s-------~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          233 -----YDILKKVEKGKYTFELPQWKKVS-------ESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             -----HHHHHHHHHCCCCCCSGGGGGSC-------HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -----HHHHHHHHcCCCCCCCcccccCC-------HHHHHHHHHHCCCChhHCcCHHHHhh
Confidence                 11222222222111111111111       22345667999999999999999985

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.78  E-value=3e-19  Score=191.60  Aligned_cols=163  Identities=18%  Similarity=0.219  Sum_probs=117.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC---CCCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD---YDMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld---~~~~~kl~D  449 (614)
                      ...+..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++   .++.+||+|
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~D  167 (486)
T 3mwu_A           91 EDSSSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIID  167 (486)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECS
T ss_pred             EcCCEEEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEE
Confidence            4467789999999999999998753   358888888888777                  9999995   456799999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ||+++......        .....+||+.|+| |. .+.++.++||||+||++|||++|+.||.....            
T Consensus       168 fg~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~------------  227 (486)
T 3mwu_A          168 FGLSTCFQQNT--------KMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE------------  227 (486)
T ss_dssp             CSCTTTBCCC------------CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH------------
T ss_pred             CCcCeECCCCC--------ccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH------------
Confidence            99998765432        2334679999977 87 66799999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+............+......       ..+.++...|++.+|++|||+.|+++
T Consensus       228 -----~~~~~~i~~~~~~~~~~~~~~~s-------~~~~~li~~~L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          228 -----YDILKRVETGKYAFDLPQWRTIS-------DDAKDLIRKMLTFHPSLRITATQCLE  276 (486)
T ss_dssp             -----HHHHHHHHHTCCCSCSGGGGGSC-------HHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -----HHHHHHHHhCCCCCCCcccCCCC-------HHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                 11222222222211111111111       22345677999999999999999986

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.78  E-value=2.1e-19  Score=182.98  Aligned_cols=155  Identities=21%  Similarity=0.240  Sum_probs=116.2

Q ss_pred             CCCCCceeEEecccCCC-chhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccc
Q 046036          390 SGGNDFKALAFEFMPNG-SLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~G-sL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~Df  450 (614)
                      +..++..++||||+..| +|.+++...   ..+++..+..|+.++                  |+|||++.++.+||+||
T Consensus        98 ~~~~~~~~lv~e~~~~g~~l~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Df  174 (335)
T 3dls_A           98 FENQGFFQLVMEKHGSGLDLFAFIDRH---PRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDF  174 (335)
T ss_dssp             EECSSEEEEEEECCTTSCBHHHHHHTC---CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCC
T ss_pred             EeeCCEEEEEEEeCCCCccHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeec
Confidence            34567789999999888 999999754   358999888888877                  99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCC-CccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARY-QHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~-~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      |+++......        ......||+.|+| |.  ...+ +.++|||||||++|||++|+.||.......         
T Consensus       175 g~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---------  237 (335)
T 3dls_A          175 GSAAYLERGK--------LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETV---------  237 (335)
T ss_dssp             TTCEECCTTC--------CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGT---------
T ss_pred             ccceECCCCC--------ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHH---------
Confidence            9998775442        2344679999977 87  3444 789999999999999999999997522100         


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                                    .... ..+..   .       ...+.++...|++.+|++|||+.|+++.
T Consensus       238 --------------~~~~-~~~~~---~-------~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          238 --------------EAAI-HPPYL---V-------SKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             --------------TTCC-CCSSC---C-------CHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             --------------hhcc-CCCcc---c-------CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                          0000 00000   0       1123456678999999999999999873

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.78  E-value=4.5e-20  Score=182.89  Aligned_cols=164  Identities=25%  Similarity=0.263  Sum_probs=115.8

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC-----------------------CCceeeCCCCCeeec
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI-----------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i-----------------------~~NILld~~~~~kl~  448 (614)
                      ++..++||||+++|+|.+++.... ....+++..+.+++.++                       |+||+++.++.+||+
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~  158 (279)
T 2w5a_A           79 NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLG  158 (279)
T ss_dssp             GTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEEC
T ss_pred             CceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEe
Confidence            456899999999999999997532 23348888887776654                       899999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+++......       .......||+.|+| |.  ...++.++||||||++++||+||+.||.....          
T Consensus       159 dfg~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----------  221 (279)
T 2w5a_A          159 DFGLARILNHDT-------SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ----------  221 (279)
T ss_dssp             CCCHHHHC---C-------HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH----------
T ss_pred             cCchheeecccc-------ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH----------
Confidence            999998765432       11234679999977 87  66789999999999999999999999975321          


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEM  590 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L  590 (614)
                             .+.............+..          ....+.++...|++.+|++|||+.||++.+
T Consensus       222 -------~~~~~~i~~~~~~~~~~~----------~~~~l~~li~~~l~~~p~~Rps~~~ll~~~  269 (279)
T 2w5a_A          222 -------KELAGKIREGKFRRIPYR----------YSDELNEIITRMLNLKDYHRPSVEEILENP  269 (279)
T ss_dssp             -------HHHHHHHHHTCCCCCCTT----------SCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred             -------HHHHHHHhhcccccCCcc----------cCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence                   111111111111111110          112344567799999999999999999765

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.78  E-value=1.7e-19  Score=181.03  Aligned_cols=160  Identities=22%  Similarity=0.258  Sum_probs=117.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++..    ..+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        91 ~~~~~~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~  166 (303)
T 3a7i_A           91 KDTKLWIIMEYLGGGSALDLLEP----GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA  166 (303)
T ss_dssp             ETTEEEEEEECCTTEEHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             cCCeEEEEEEeCCCCcHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccc
Confidence            35668999999999999999974    258898888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +.......       ......||+.|+| |.  ...++.++|||||||+++||++|+.||......  ..          
T Consensus       167 ~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~----------  227 (303)
T 3a7i_A          167 GQLTDTQI-------KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KV----------  227 (303)
T ss_dssp             EECBTTBC-------CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HH----------
T ss_pred             eecCcccc-------ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HH----------
Confidence            87654321       2334679999977 87  667889999999999999999999999753211  00          


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                           ............+   ...       ...+.++...|++.+|++|||+.|+++.
T Consensus       228 -----~~~~~~~~~~~~~---~~~-------~~~l~~li~~~l~~dp~~Rps~~~ll~~  271 (303)
T 3a7i_A          228 -----LFLIPKNNPPTLE---GNY-------SKPLKEFVEACLNKEPSFRPTAKELLKH  271 (303)
T ss_dssp             -----HHHHHHSCCCCCC---SSC-------CHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred             -----HHHhhcCCCCCCc---ccc-------CHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence                 0000111100000   001       1224467779999999999999999874

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.78  E-value=5.3e-20  Score=187.28  Aligned_cols=187  Identities=17%  Similarity=0.118  Sum_probs=116.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        94 ~~~~~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~  170 (331)
T 4aaa_A           94 KKKKRWYLVFEFVDHTILDDLELFP---NGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGF  170 (331)
T ss_dssp             EETTEEEEEEECCSEEHHHHHHHST---TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             ecCCEEEEEEecCCcchHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCC
Confidence            3456789999999999999987643   358888888888777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......       ......||++|+| |.  . ..++.++||||+||+++||+||+.||....... .+........
T Consensus       171 ~~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~  242 (331)
T 4aaa_A          171 ARTLAAPGE-------VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMCLG  242 (331)
T ss_dssp             C-------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHC
T ss_pred             ceeecCCcc-------ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhC
Confidence            987654321       2334679999977 87  2 368899999999999999999999997643211 1111111111


Q ss_pred             C--CChHHHHHHH--HhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 P--ESVMELVYSR--LLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~--~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .  ....+.+...  ..+...+....+.............+.+++..|++.+|++|||++|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          243 NLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             SCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             CCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            1  0111111110  1111101111111111111122344567788999999999999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=3.4e-19  Score=166.85  Aligned_cols=152  Identities=18%  Similarity=0.251  Sum_probs=75.6

Q ss_pred             CCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCC
Q 046036            9 NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN   88 (614)
Q Consensus         9 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~   88 (614)
                      ++++|+.|++++|.++ .+| .+..+++|++|++++|.++. + ..   +..++ +|++|++++|.+++..|..+..+++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~-~~---l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~  113 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-Y-NP---ISGLS-NLERLRIMGKDVTSDKIPNLSGLTS  113 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-C-GG---GTTCT-TCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-c-hh---hhcCC-CCCEEEeECCccCcccChhhcCCCC
Confidence            3445555555555555 333 35555555555555554431 1 12   44444 5555555555555444555555555


Q ss_pred             CCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCc-cccccchhhhccCCCCeeecccccCCCCCCCCC
Q 046036           89 LIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENN-LTGNIPESLENLTSLQILNLSCNHLGGSIPKPS  167 (614)
Q Consensus        89 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  167 (614)
                      |++|+|++|++++..|..++.+++|++|+            |++|. ++ .+| .+..+++|++|++++|++++ ++ .+
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~------------L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l  177 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSID------------LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GI  177 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEE------------CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TG
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEE------------ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hh
Confidence            55555555555544455555555555444            55554 33 233 35555555555555555553 22 44


Q ss_pred             CCCCCCCEEEcCCCCCc
Q 046036          168 GLFSTLSSIDFAHNNFN  184 (614)
Q Consensus       168 ~~l~~L~~L~Ls~N~l~  184 (614)
                      ..+++|+.|++++|+|.
T Consensus       178 ~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          178 EDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGCSSCCEEEECBC---
T ss_pred             ccCCCCCEEEeeCcccC
Confidence            45555555555555543

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.78  E-value=1.7e-19  Score=194.39  Aligned_cols=164  Identities=20%  Similarity=0.260  Sum_probs=119.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC---Ceeec
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM---TAYVG  448 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~---~~kl~  448 (614)
                      +..++..++|||||++|+|.+++...   ..+++..+..++.++                  |+|||++.++   .+||+
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~  191 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINR---HKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIV  191 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEEC
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEE
Confidence            34567789999999999999999753   358899888888877                  9999999775   69999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      |||+++......        .....+||+.|+| |. ...++.++||||+||++|||++|+.||.....           
T Consensus       192 Dfg~a~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----------  252 (504)
T 3q5i_A          192 DFGLSSFFSKDY--------KLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQND-----------  252 (504)
T ss_dssp             CCTTCEECCTTS--------CBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----------
T ss_pred             ECCCCEEcCCCC--------ccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCH-----------
Confidence            999998775432        2344679999977 87 67799999999999999999999999975321           


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                            .+.+.............   .    .......+.++...|++.+|.+|||++|+++
T Consensus       253 ------~~~~~~i~~~~~~~~~~---~----~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          253 ------QDIIKKVEKGKYYFDFN---D----WKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             ------HHHHHHHHHCCCCCCHH---H----HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ------HHHHHHHHcCCCCCCcc---c----cCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                  11111111111110000   0    0011123445677999999999999999985

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.78  E-value=2e-19  Score=184.53  Aligned_cols=189  Identities=15%  Similarity=0.138  Sum_probs=119.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++||||+++ +|.+.+...  ...+++..+..++.++                  |+|||++.++.+||+|||+++
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~  172 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNV--LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR  172 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CceEEEEEeccCC-CHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcc
Confidence            4568999999996 888877653  2358899888888877                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH--hhC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE--MAL  528 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~--~~~  528 (614)
                      ........   .........||++|+| |.   ...++.++|||||||+++||+||+.||........ +.....  ...
T Consensus       173 ~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~~~~~  248 (351)
T 3mi9_A          173 AFSLAKNS---QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQ-LALISQLCGSI  248 (351)
T ss_dssp             ECCCCSSS---SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCC
T ss_pred             cccccccc---cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCC
Confidence            76533221   1122345689999977 86   34579999999999999999999999976432111 111111  111


Q ss_pred             CCC-hHHHHHHHHhcCcCCCCCCchhhHHHHHH--HHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PES-VMELVYSRLLQGVDKDAEDEPCMKAKIRE--CLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      +.. ....-........................  .-..+.++...|++.||++|||++|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          249 TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             CTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence            111 11000000001110001111111111111  0123567888999999999999999986

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.78  E-value=8.7e-20  Score=186.02  Aligned_cols=165  Identities=19%  Similarity=0.228  Sum_probs=100.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC---CCCeeecccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY---DMTAYVGDFG  451 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~---~~~~kl~DfG  451 (614)
                      +...++|||||++|+|.+++.... ...+++..+..++.++                  |+||+++.   ++.+||+|||
T Consensus        98 ~~~~~lv~e~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg  176 (336)
T 3fhr_A           98 KRCLLIIMECMEGGELFSRIQERG-DQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFG  176 (336)
T ss_dssp             EEEEEEEEECCTTEEHHHHHHTC--CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCT
T ss_pred             CceEEEEEeccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccc
Confidence            455799999999999999998653 3468999998888887                  99999986   4559999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++......         .....||+.|+| |.  ...++.++|||||||+++||+||+.||.........         
T Consensus       177 ~~~~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~---------  238 (336)
T 3fhr_A          177 FAKETTQNA---------LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAIS---------  238 (336)
T ss_dssp             TCEEC-------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------
T ss_pred             cceeccccc---------cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhh---------
Confidence            998665332         234678999977 87  667889999999999999999999999753221110         


Q ss_pred             CCChHHHHHHHHh-cCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLL-QGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           ......+. ...........       .....+.++...|++.+|++|||+.|+++
T Consensus       239 -----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          239 -----PGMKRRIRLGQYGFPNPEWS-------EVSEDAKQLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             -----------------CCCTTTST-------TCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             -----hhHHHhhhccccccCchhhc-------cCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                 00000000 00000000000       11123445777999999999999999996

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=4.2e-20  Score=206.76  Aligned_cols=219  Identities=20%  Similarity=0.161  Sum_probs=127.5

Q ss_pred             CCCCeeeecCCcccccCCcCCCCCCCCcE-----EecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcC
Q 046036           11 FRLQNLNFGNSTVQGEIPSHLSPTSKLTY-----LSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK   85 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~-----L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~   85 (614)
                      +.++.|+|.+|.+.. .+..+.....|..     ++++.|++. ..|..   +..++ +|+.|+|++|.+. .+|..+..
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~---~~~l~-~L~~L~Ls~n~l~-~l~~~~~~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDS---KYDDQ-LWHALDLSNLQIF-NISANIFK  245 (727)
T ss_dssp             ------------------------------------------------------CCC-CCCEEECTTSCCS-CCCGGGGG
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhh---hccCC-CCcEEECCCCCCC-CCChhhcC
Confidence            568899999999985 3444332222322     333344444 44555   67777 9999999999998 78888889


Q ss_pred             CCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCC
Q 046036           86 YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK  165 (614)
Q Consensus        86 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  165 (614)
                      +++|++|+|++|.|+ .+|..|++|++|++|+            |++|.|+ .+|..|..|++|++|+|++|.|+ .+|.
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~------------Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~  310 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLD------------LSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW  310 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEE------------CTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEe------------CcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh
Confidence            999999999999999 8899999999999888            9999999 77999999999999999999998 7888


Q ss_pred             CCCCCCCCCEEEcCCCCCccCCcccccCCCC-CceeccCCccCCCCccccccCcccchHHhccCc--------cccccCC
Q 046036          166 PSGLFSTLSSIDFAHNNFNGSLPLEVGSLSN-TQELDFSEHMLSDEIPITLGNRSKFEHLLLGGN--------MFQGRIP  236 (614)
Q Consensus       166 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~p  236 (614)
                      .++.+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|..      |+.|++++|        .+.+..+
T Consensus       311 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~  384 (727)
T 4b8c_D          311 EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTE  384 (727)
T ss_dssp             STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------------------
T ss_pred             hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCcccccc
Confidence            8999999999999999999999988866532 235889999999988865      455667766        4444445


Q ss_pred             ccccCCCccceEEccCCcCcc
Q 046036          237 PFFGSFKGTIDLNLSHNNLSG  257 (614)
Q Consensus       237 ~~~~~l~~L~~L~Ls~N~l~~  257 (614)
                      ..+..+..+....+++|-+.+
T Consensus       385 ~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          385 HLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             -----------------CCCG
T ss_pred             chhhcccccceeeeecccccc
Confidence            555667777778888888763

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.78  E-value=3.8e-19  Score=176.76  Aligned_cols=157  Identities=20%  Similarity=0.287  Sum_probs=115.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.+||+|||++
T Consensus        85 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~  161 (284)
T 2vgo_A           85 DRKRIYLMLEFAPRGELYKELQKH---GRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWS  161 (284)
T ss_dssp             CSSEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             cCCEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEeccccc
Confidence            456789999999999999999753   358888888887777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .......         .....||+.|+| |.  ...++.++||||||++++||++|+.||......              
T Consensus       162 ~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------------  218 (284)
T 2vgo_A          162 VHAPSLR---------RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT--------------  218 (284)
T ss_dssp             EECSSSC---------BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--------------
T ss_pred             ccCcccc---------cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh--------------
Confidence            7654321         234679999977 87  567889999999999999999999999753211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         +........... .+   +...       ..+.++...|++.+|++||++.|+++
T Consensus       219 ---~~~~~~~~~~~~-~~---~~~~-------~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          219 ---ETHRRIVNVDLK-FP---PFLS-------DGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             ---HHHHHHHTTCCC-CC---TTSC-------HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ---HHHHHHhccccC-CC---CcCC-------HHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence               111111111111 01   0111       12345677999999999999999986

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.78  E-value=1.7e-19  Score=190.06  Aligned_cols=109  Identities=26%  Similarity=0.262  Sum_probs=91.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC--eeeccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT--AYVGDFGL  452 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~--~kl~DfGl  452 (614)
                      ++..++||||++ |+|.+++.... ...++|..+.+|+.++                  |+|||++.++.  +||+|||+
T Consensus       171 ~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~  248 (429)
T 3kvw_A          171 RNHICMTFELLS-MNLYELIKKNK-FQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGS  248 (429)
T ss_dssp             TTEEEEEECCCC-CBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             CCeEEEEEeccC-CCHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeeccc
Confidence            567899999997 69999997643 3458999988888887                  99999999987  99999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      ++.....          ....+||+.|+| |+  ...++.++|||||||+++||+||+.||...
T Consensus       249 a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          249 SCYEHQR----------VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             CEETTCC----------CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ceecCCc----------ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            9765432          234689999977 87  677999999999999999999999999764

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.78  E-value=1.1e-19  Score=181.08  Aligned_cols=163  Identities=21%  Similarity=0.216  Sum_probs=105.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfG  451 (614)
                      .++..++||||++ |+|.+++.... ....+++..+..++.++                   |+||+++.++.+||+|||
T Consensus        77 ~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T 3fme_A           77 REGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFG  155 (290)
T ss_dssp             CSSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC-
T ss_pred             ccCCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecC
Confidence            4567899999998 59888875311 23468898888877666                   899999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      +++......        ......||+.|+| |.      ...++.++|||||||+++||+||+.||......        
T Consensus       156 ~~~~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--------  219 (290)
T 3fme_A          156 ISGYLVDDV--------AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTP--------  219 (290)
T ss_dssp             ----------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCH--------
T ss_pred             Ccccccccc--------cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCch--------
Confidence            998765432        1233579999977 76      346788999999999999999999999742211        


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              ...+...+.......+..         .....+.+++..|++.+|++|||+.|+++
T Consensus       220 --------~~~~~~~~~~~~~~~~~~---------~~~~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          220 --------FQQLKQVVEEPSPQLPAD---------KFSAEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             --------HHHHHHHHHSCCCCCCTT---------TSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             --------HHHHHHHhccCCCCcccc---------cCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence                    111112222211111111         01123446777999999999999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=1.3e-19  Score=177.67  Aligned_cols=167  Identities=20%  Similarity=0.245  Sum_probs=92.3

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      ++..+++++|.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|+.|+            |++|+|++..+  +
T Consensus        20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~------------L~~N~i~~~~~--l   81 (263)
T 1xeu_A           20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELH------------LSHNQISDLSP--L   81 (263)
T ss_dssp             HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEE------------CCSSCCCCCGG--G
T ss_pred             HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEE------------CCCCccCCChh--h
Confidence            44555666666653 22 3555666666666666665 333 455555555555            66666664433  6


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchH
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEH  223 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  223 (614)
                      ..+++|++|+|++|++++ +|....  ++|+.|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|+.
T Consensus        82 ~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~  154 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEV  154 (263)
T ss_dssp             TTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCE
T ss_pred             ccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCE
Confidence            666666666666666663 333222  6666666666666642 2 356666666666666666543 1 3444555555


Q ss_pred             HhccCccccccCCccccCCCccceEEccCCcCcc
Q 046036          224 LLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSG  257 (614)
Q Consensus       224 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  257 (614)
                      |+|++|.+++.  ..+..+++|+.|++++|++++
T Consensus       155 L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          155 LDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             EECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             EECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            55555555433  344455555555555555553

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.78  E-value=2.5e-19  Score=179.09  Aligned_cols=161  Identities=19%  Similarity=0.244  Sum_probs=117.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~  161 (294)
T 2rku_A           85 EDNDFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGL  161 (294)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ccCCEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccC
Confidence            3456789999999999999998643   358888888888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......||+.|+| |.  ...++.++||||||++++||+||+.||......             
T Consensus       162 ~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-------------  221 (294)
T 2rku_A          162 ATKVEYDGE-------RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK-------------  221 (294)
T ss_dssp             CEECCSTTC-------CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-------------
T ss_pred             ceecccCcc-------ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-------------
Confidence            987653321       1334679999977 87  567889999999999999999999999753211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                          +.......... ..+..   .    .   ..+.++...|++.+|++|||+.|+++.
T Consensus       222 ----~~~~~~~~~~~-~~~~~---~----~---~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          222 ----ETYLRIKKNEY-SIPKH---I----N---PVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             ----HHHHHHHTTCC-CCCTT---S----C---HHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             ----HHHHHHhhccC-CCccc---c----C---HHHHHHHHHHcccChhhCcCHHHHhhC
Confidence                11111111111 11110   1    1   123456779999999999999999863

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.78  E-value=4.8e-19  Score=184.33  Aligned_cols=116  Identities=24%  Similarity=0.288  Sum_probs=88.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++|||||+ |+|.+++...    .+++..+..++.++                  |+|||++.++.+||+|||+|+
T Consensus        83 ~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~  157 (388)
T 3oz6_A           83 DRDVYLVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSR  157 (388)
T ss_dssp             SSCEEEEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CCEEEEEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence            346899999999 5999999753    47888777777666                  999999999999999999998


Q ss_pred             ccCCCCCCC--------------CCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          455 FLPTNVTNP--------------MKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       455 ~~~~~~~~~--------------~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .........              .......+..+||++|+| |.   ...++.++||||+||+++||++|+.||...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          158 SFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             ESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence            764321100              000112345689999977 87   357899999999999999999999999763

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.78  E-value=4.2e-20  Score=186.80  Aligned_cols=177  Identities=19%  Similarity=0.216  Sum_probs=120.2

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ....++||||+++|+|.+++.... ....+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus       102 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~  181 (317)
T 2buj_A          102 KHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSM  181 (317)
T ss_dssp             EEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred             CceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence            456789999999999999987521 23468999988888877                  99999999999999999998


Q ss_pred             cccCCCCCCCC--CCCcCcccccccccccc-cc-c-C---CCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          454 RFLPTNVTNPM--KGQSNSAAVWGSIGYNM-EW-V-A---RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       454 ~~~~~~~~~~~--~~~~~~~~~~gt~~y~a-E~-~-~---~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      +..........  ..........||+.|+| |. . .   .++.++|||||||++|||++|+.||...........    
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~----  257 (317)
T 2buj_A          182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVA----  257 (317)
T ss_dssp             EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHH----
T ss_pred             hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhh----
Confidence            76542211000  00000123567999966 87 2 1   368899999999999999999999964322111111    


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                              ...    ...... + ..+..       ...+.++...|++.+|++|||+.|+++.|+.++
T Consensus       258 --------~~~----~~~~~~-~-~~~~~-------~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~  305 (317)
T 2buj_A          258 --------LAV----QNQLSI-P-QSPRH-------SSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ  305 (317)
T ss_dssp             --------HHH----HCC--C-C-CCTTS-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred             --------HHh----hccCCC-C-ccccC-------CHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence                    111    110000 0 00011       123446777999999999999999999998775

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.78  E-value=3.5e-19  Score=178.88  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=115.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee---CCCCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL---DYDMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl---d~~~~~kl~D  449 (614)
                      ...+..++||||+++|+|.+++...   ..+++.....++.++                  |+||++   ++++.+||+|
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~D  152 (304)
T 2jam_A           76 ESTTHYYLVMQLVSGGELFDRILER---GVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITD  152 (304)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCS
T ss_pred             ccCCEEEEEEEcCCCccHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEcc
Confidence            3456789999999999999998743   247888888777766                  999999   7889999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||+++.....         ......||+.|+| |.  ...++.++||||+||+++||++|+.||.....           
T Consensus       153 fg~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----------  212 (304)
T 2jam_A          153 FGLSKMEQNG---------IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE-----------  212 (304)
T ss_dssp             CSTTCCCCCB---------TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH-----------
T ss_pred             CCcceecCCC---------ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----------
Confidence            9999764322         1334679999976 87  56789999999999999999999999975321           


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                            .+....................       ...+.++...|++.+|++|||+.|+++
T Consensus       213 ------~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          213 ------SKLFEKIKEGYYEFESPFWDDI-------SESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             ------HHHHHHHHHCCCCCCTTTTTTS-------CHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             ------HHHHHHHHcCCCCCCccccccC-------CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                  1111111111111111100111       123445677999999999999999986

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.78  E-value=6.1e-20  Score=182.93  Aligned_cols=112  Identities=20%  Similarity=0.296  Sum_probs=87.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++ +|.+++...  ...+++.....++.++                  |+||+++.++.+||+|||++
T Consensus        71 ~~~~~~lv~e~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  147 (288)
T 1ob3_A           71 TKKRLVLVFEHLDQ-DLKKLLDVC--EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLA  147 (288)
T ss_dssp             CSSCEEEEEECCSE-EHHHHHHTS--TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHH
T ss_pred             cCCeEEEEEEecCC-CHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccc
Confidence            45678999999996 999998753  2358888888887777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +......       .......||+.|+| |.   ...++.++||||+||+++||+||+.||...
T Consensus       148 ~~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  204 (288)
T 1ob3_A          148 RAFGIPV-------RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (288)
T ss_dssp             HHHCC----------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccCccc-------cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            8765332       12334678999977 86   345899999999999999999999999753

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.78  E-value=1.5e-19  Score=181.46  Aligned_cols=176  Identities=22%  Similarity=0.248  Sum_probs=113.8

Q ss_pred             CCCceeEEecccCCCchhhhccCC-----CCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeec
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPN-----EATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~-----~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~  448 (614)
                      .++..++||||+++|+|.+++...     .....+++..+..++.++                  |+||+++.++.+||+
T Consensus        84 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~  163 (303)
T 2vwi_A           84 VKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIA  163 (303)
T ss_dssp             SSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEEC
T ss_pred             ecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEE
Confidence            356689999999999999998631     123458899888888877                  999999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      |||+++.........  .........||+.|+| |.   ...++.++|||||||+++||+||+.||........ ... .
T Consensus       164 dfg~~~~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~-~  239 (303)
T 2vwi_A          164 DFGVSAFLATGGDIT--RNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV-LML-T  239 (303)
T ss_dssp             CCHHHHHCC-----------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH-HHH-H
T ss_pred             eccchheeccCCCcc--chhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH-HHH-H
Confidence            999998765432110  0011234679999977 87   25689999999999999999999999975322111 110 1


Q ss_pred             HhhCCCChH-HHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVM-ELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....+.... ...+..+..                 .....+.++...|++.+|++|||+.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          240 LQNDPPSLETGVQDKEMLK-----------------KYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             HTSSCCCTTC-----CCCC-----------------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hccCCCccccccccchhhh-----------------hhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            001111100 000000000                 01123446777999999999999999986

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.77  E-value=2.7e-19  Score=182.38  Aligned_cols=160  Identities=19%  Similarity=0.237  Sum_probs=117.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus       111 ~~~~~~~lv~e~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~  187 (335)
T 2owb_A          111 EDNDFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGL  187 (335)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             ecCCeEEEEEecCCCCCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccC
Confidence            3466789999999999999998743   358898888888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++.......       ......||+.|+| |.  ...++.++|||||||++|||++|+.||......             
T Consensus       188 ~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-------------  247 (335)
T 2owb_A          188 ATKVEYDGE-------RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK-------------  247 (335)
T ss_dssp             CEECCSTTC-------CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH-------------
T ss_pred             ceecccCcc-------cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH-------------
Confidence            987653321       2334679999977 87  667889999999999999999999999753211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          +........... .+.   ..    .   ..+.++...|++.+|++|||+.|+++
T Consensus       248 ----~~~~~~~~~~~~-~~~---~~----~---~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          248 ----ETYLRIKKNEYS-IPK---HI----N---PVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             ----HHHHHHHHTCCC-CCT---TS----C---HHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             ----HHHHHHhcCCCC-CCc---cC----C---HHHHHHHHHHccCChhHCcCHHHHhc
Confidence                111111111110 010   00    1   12335667999999999999999986

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=3.2e-19  Score=166.15  Aligned_cols=157  Identities=22%  Similarity=0.264  Sum_probs=118.5

Q ss_pred             CeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcc-cccCCCCCceeccCCccCCCCccccccCcccchHHhccC
Q 046036          150 QILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPL-EVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG  228 (614)
Q Consensus       150 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~  228 (614)
                      +.+++++|.++ .+|..+..  +|++|++++|.|++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56777777775 56665433  788888888888765553 377888888888888888888788888888888888888


Q ss_pred             ccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCcccCCC
Q 046036          229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGVP  308 (614)
Q Consensus       229 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~~  308 (614)
                      |+|++..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+-.+....+....+.++...|+.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            88888888888889999999999999998888889999999999999999988765332222122223455666776554


Q ss_pred             C
Q 046036          309 E  309 (614)
Q Consensus       309 ~  309 (614)
                      .
T Consensus       168 ~  168 (192)
T 1w8a_A          168 K  168 (192)
T ss_dssp             T
T ss_pred             H
Confidence            3

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.77  E-value=5.8e-19  Score=176.65  Aligned_cols=163  Identities=23%  Similarity=0.291  Sum_probs=117.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~  170 (298)
T 1phk_A           94 ETNTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGF  170 (298)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             ccCCeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccc
Confidence            3456789999999999999999753   358888888888777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      ++......        ......||+.|+| |.        ...++.++||||||++++||++|+.||.....        
T Consensus       171 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--------  234 (298)
T 1phk_A          171 SCQLDPGE--------KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ--------  234 (298)
T ss_dssp             CEECCTTC--------CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------
T ss_pred             hhhcCCCc--------ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH--------
Confidence            98765432        1334679999977 76        23578899999999999999999999964221        


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                               .+...................       ....+.++...|++.+|++|||+.|+++
T Consensus       235 ---------~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          235 ---------MLMLRMIMSGNYQFGSPEWDD-------YSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             ---------HHHHHHHHHTCCCCCTTTGGG-------SCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ---------HHHHHHHhcCCcccCcccccc-------cCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence                     111111112211111111111       1223446777999999999999999875

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.77  E-value=2.9e-19  Score=181.68  Aligned_cols=181  Identities=18%  Similarity=0.125  Sum_probs=115.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfGla  453 (614)
                      ....++||||+++|+|.+++..      +++..+..++.++                  |+|||++.++ .+||+|||++
T Consensus       105 ~~~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a  178 (330)
T 3nsz_A          105 SRTPALVFEHVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLA  178 (330)
T ss_dssp             TCCEEEEEECCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             CCceEEEEeccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCc
Confidence            4567999999999999999852      6777777777666                  9999999776 8999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......        .....||+.|+| |.   ...++.++||||+||+++||++|+.||.........+.......-+
T Consensus       179 ~~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~  250 (330)
T 3nsz_A          179 EFYHPGQE--------YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT  250 (330)
T ss_dssp             EECCTTCC--------CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCH
T ss_pred             eEcCCCCc--------cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCC
Confidence            87654322        334678999977 76   3578999999999999999999999996432222222222211111


Q ss_pred             CChHHHHH-----------HHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVY-----------SRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ....+.++           ..+...... ...+..........-..+.++...|++.+|++|||++|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          251 EDLYDYIDKYNIELDPRFNDILGRHSRK-RWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             HHHHHHHHHTTCCCCTHHHHHHCCCCCC-CGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             chhhhHHHHhccccccchhhhhhhcccc-chhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            11111111           111100000 00000000000001234456778999999999999999986

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.77  E-value=3.5e-20  Score=191.78  Aligned_cols=172  Identities=12%  Similarity=0.044  Sum_probs=112.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHH------HHHHhhC------------------CCceeeCCCCCeeecc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEG------LKIAVDI------------------PSNVLLDYDMTAYVGD  449 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~------~~ia~~i------------------~~NILld~~~~~kl~D  449 (614)
                      ...++|||||+ |+|.+++....  ..+.+..+      ..++.++                  |+|||++.++.+||+|
T Consensus       161 ~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~D  237 (371)
T 3q60_A          161 ANYLLLMPAAS-VDLELLFSTLD--FVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGD  237 (371)
T ss_dssp             EEEEEEECCCS-EEHHHHHHHHH--HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEECTTSCEEECC
T ss_pred             eeEEEEecCCC-CCHHHHHHHhc--cccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCcCCHHHEEECCCCCEEEEe
Confidence            44799999999 89999997532  12344444      4444444                  9999999999999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--c--CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V--ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~--~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      ||+++.....          .....||+.|+| |.  .  ..++.++|||||||++|||+||+.||..........  |.
T Consensus       238 FG~a~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~--~~  305 (371)
T 3q60_A          238 VSALWKVGTR----------GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGS--WK  305 (371)
T ss_dssp             GGGEEETTCE----------EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTC--CC
T ss_pred             cceeeecCCC----------ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccc--hh
Confidence            9999866432          224567799977 87  3  578999999999999999999999998643221100  00


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHhHHHh
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM--EMNVIKEVL  597 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i~~~~  597 (614)
                      .......          ..........+..       ...+.++...|++.+|++|||+.|+++  .++++....
T Consensus       306 ~~~~~~~----------~~~~~~~~~~~~~-------~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~  363 (371)
T 3q60_A          306 RPSLRVP----------GTDSLAFGSCTPL-------PDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEI  363 (371)
T ss_dssp             BCCTTSC----------CCCSCCCTTSSCC-------CHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHHH
T ss_pred             hhhhhhc----------cccccchhhccCC-------CHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHHH
Confidence            0000000          0000000000011       123345677999999999999999985  555555443

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.77  E-value=4.3e-19  Score=188.58  Aligned_cols=181  Identities=18%  Similarity=0.111  Sum_probs=111.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++|||||++ +|.+.+..     .+++..+..++.++                  |+|||++.++.+||+|||+++
T Consensus       139 ~~~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~  212 (464)
T 3ttj_A          139 FQDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  212 (464)
T ss_dssp             CCEEEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred             CCeEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeee
Confidence            3567999999987 56666653     37888877777776                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC-C-
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL-P-  529 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~-~-  529 (614)
                      ......        ..+..+||++|+| |.  ...++.++||||+||+++||++|+.||.+..... .+....+..- | 
T Consensus       213 ~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~-~~~~i~~~lg~p~  283 (464)
T 3ttj_A          213 TAGTSF--------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID-QWNKVIEQLGTPC  283 (464)
T ss_dssp             ----CC--------CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCSCC
T ss_pred             ecCCCc--------ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCC
Confidence            765432        2445789999977 87  6688999999999999999999999997532211 1111111111 1 


Q ss_pred             ----CChHHHHHHHHhcCcCCCCCCch---------hhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ----ESVMELVYSRLLQGVDKDAEDEP---------CMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ----~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          ......+...+...........+         ...+.....-..+.++...|++.||++|||++|+++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  355 (464)
T 3ttj_A          284 PEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  355 (464)
T ss_dssp             HHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                01111121222111000000000         000111122345667888999999999999999986

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.77  E-value=1.1e-19  Score=189.39  Aligned_cols=186  Identities=17%  Similarity=0.138  Sum_probs=115.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC-CCCCeeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD-YDMTAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld-~~~~~kl~DfGla  453 (614)
                      ..+.++|||||+++.+....+.......+++.....++.++                  |+|||++ .++.+||+|||++
T Consensus       110 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a  189 (394)
T 4e7w_A          110 EVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSA  189 (394)
T ss_dssp             CEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             ceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCc
Confidence            34478999999985544433211123458888877777766                  9999999 7899999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......        .....||+.|+| |.   ...++.++||||+||+++||++|+.||...... ..+....+..-.
T Consensus       190 ~~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~  260 (394)
T 4e7w_A          190 KILIAGEP--------NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-DQLVEIIKVLGT  260 (394)
T ss_dssp             EECCTTCC--------CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCC
T ss_pred             ccccCCCC--------CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCC
Confidence            87754432        234678999977 86   346899999999999999999999999764321 112222222111


Q ss_pred             CChHHH--HHHHHhcCcCCCCCCchhhHHHH-HHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMEL--VYSRLLQGVDKDAEDEPCMKAKI-RECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .....+  ..+......-+... ...+...+ ......+.++...|++.+|++|||+.|+++
T Consensus       261 p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          261 PSREQIKTMNPNYMEHKFPQIR-PHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             CCHHHHHHHCGGGSSSCCCCCC-CCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHhhChhhhhhcccccc-CCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence            111111  11111110000000 00010000 011224556778999999999999999986

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.77  E-value=8.7e-20  Score=186.88  Aligned_cols=185  Identities=18%  Similarity=0.130  Sum_probs=116.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++ +|.+++....  ..+++..+..++.++                  |+||+++.++.+||+|||+
T Consensus        82 ~~~~~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  158 (346)
T 1ua2_A           82 GHKSNISLVFDFMET-DLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGL  158 (346)
T ss_dssp             CCTTCCEEEEECCSE-EHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGG
T ss_pred             eeCCceEEEEEcCCC-CHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEeccc
Confidence            446678999999996 8999987542  346777777766666                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh-h
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM-A  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~-~  527 (614)
                      ++......       .......||+.|+| |.   ...++.++|||||||+++||++|+.||....... .+...... .
T Consensus       159 a~~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~-~~~~i~~~~~  230 (346)
T 1ua2_A          159 AKSFGSPN-------RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD-QLTRIFETLG  230 (346)
T ss_dssp             GSTTTSCC-------CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHC
T ss_pred             ceeccCCc-------ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHcC
Confidence            98765432       12345679999977 87   2357899999999999999999999987532211 11111111 1


Q ss_pred             CCC--ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPE--SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .+.  ...+..  .+........................+.++...|++.+|++|||+.|+++
T Consensus       231 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  291 (346)
T 1ua2_A          231 TPTEEQWPDMC--SLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  291 (346)
T ss_dssp             CCCTTTSSSTT--SSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CCChhhhhhhc--cCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence            110  000000  00000000000000000001111234556778999999999999999986

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.77  E-value=7.3e-19  Score=179.24  Aligned_cols=110  Identities=21%  Similarity=0.254  Sum_probs=91.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC------------
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY------------  441 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~------------  441 (614)
                      .++..++||||+ +|+|.+++.... ...+++..+..++.++                  |+||+++.            
T Consensus        88 ~~~~~~lv~e~~-~~~l~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~  165 (339)
T 1z57_A           88 HHGHICIVFELL-GLSTYDFIKENG-FLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIK  165 (339)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----
T ss_pred             cCCcEEEEEcCC-CCCHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccc
Confidence            356789999999 889999997643 3458888888888777                  99999998            


Q ss_pred             -------CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCC
Q 046036          442 -------DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTD  511 (614)
Q Consensus       442 -------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~  511 (614)
                             ++.+||+|||+++.....          .....||+.|+| |.  ...++.++|||||||+++||+||+.||.
T Consensus       166 ~~~~~~~~~~~kl~Dfg~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~  235 (339)
T 1z57_A          166 RDERTLINPDIKVVDFGSATYDDEH----------HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFP  235 (339)
T ss_dssp             CEEEEESCCCEEECCCSSCEETTSC----------CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             cccccccCCCceEeeCcccccCccc----------cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence                   668999999999865432          223679999977 87  6678999999999999999999999997


Q ss_pred             cc
Q 046036          512 EM  513 (614)
Q Consensus       512 ~~  513 (614)
                      ..
T Consensus       236 ~~  237 (339)
T 1z57_A          236 TH  237 (339)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.77  E-value=6.1e-19  Score=174.44  Aligned_cols=158  Identities=23%  Similarity=0.334  Sum_probs=106.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.++.+|++|||++
T Consensus        82 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~  158 (276)
T 2h6d_A           82 TPTDFFMVMEYVSGGELFDYICKH---GRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS  158 (276)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGG
T ss_pred             cCCeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccc
Confidence            456789999999999999999743   247888888887777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +......        ......||+.|+| |.  ... .+.++||||||++++||++|+.||.....              
T Consensus       159 ~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--------------  216 (276)
T 2h6d_A          159 NMMSDGE--------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV--------------  216 (276)
T ss_dssp             GCCCC---------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             cccCCCc--------ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH--------------
Confidence            8765432        1234578999966 87  223 36899999999999999999999975211              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+.... +.......+..   .       -..+.++...|++.+|++|||+.|+++
T Consensus       217 ---~~~~~~-~~~~~~~~~~~---~-------~~~l~~li~~~l~~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          217 ---PTLFKK-IRGGVFYIPEY---L-------NRSVATLLMHMLQVDPLKRATIKDIRE  261 (276)
T ss_dssp             ---HHHHHH-HHHCCCCCCTT---S-------CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---HHHHHH-hhcCcccCchh---c-------CHHHHHHHHHHccCChhhCCCHHHHHh
Confidence               111111 11111111110   0       112345677999999999999999986

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.77  E-value=5.8e-19  Score=178.13  Aligned_cols=162  Identities=19%  Similarity=0.251  Sum_probs=116.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus        96 ~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  173 (314)
T 3com_A           96 NTDLWIVMEYCGAGSVSDIIRLR--NKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAG  173 (314)
T ss_dssp             TTEEEEEEECCTTEEHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCEEEEEeecCCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccch
Confidence            45679999999999999998632  2358888888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ......       .......||+.|+| |.  ...++.++|||||||+++||++|+.||......               
T Consensus       174 ~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---------------  231 (314)
T 3com_A          174 QLTDTM-------AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM---------------  231 (314)
T ss_dssp             ECBTTB-------SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH---------------
T ss_pred             hhhhhc-------cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH---------------
Confidence            765432       12334679999977 87  567899999999999999999999999753211               


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                        +.... +.............+       ...+.++...|++.+|++|||+.|+++
T Consensus       232 --~~~~~-~~~~~~~~~~~~~~~-------~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          232 --RAIFM-IPTNPPPTFRKPELW-------SDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             --HHHHH-HHHSCCCCCSSGGGS-------CHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             --HHHHH-HhcCCCcccCCcccC-------CHHHHHHHHHHccCChhhCcCHHHHHh
Confidence              00000 011100000011111       123445677999999999999999986

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.77  E-value=3.8e-19  Score=180.46  Aligned_cols=162  Identities=20%  Similarity=0.213  Sum_probs=108.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++||||+++|+|.+++.... ...+++.....++.++                  |+||+++.++.+||+|||+++
T Consensus        99 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~  177 (326)
T 2x7f_A           99 DDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  177 (326)
T ss_dssp             CCEEEEEEECCTTEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC
T ss_pred             cceEEEEEEcCCCCcHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCce
Confidence            467899999999999999997542 3458888777777766                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      .......       ......||+.|+| |.       ...++.++|||||||++|||+||+.||......          
T Consensus       178 ~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----------  240 (326)
T 2x7f_A          178 QLDRTVG-------RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM----------  240 (326)
T ss_dssp             --------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH----------
T ss_pred             ecCcCcc-------ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH----------
Confidence            7653321       1334679999977 76       246789999999999999999999999653211          


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             +........... .. ......       ..+.++...|++.+|++||++.|+++
T Consensus       241 -------~~~~~~~~~~~~-~~-~~~~~~-------~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          241 -------RALFLIPRNPAP-RL-KSKKWS-------KKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             -------HHHHHHHHSCCC-CC-SCSCSC-------HHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             -------HHHHHhhcCccc-cC-CccccC-------HHHHHHHHHHhccChhhCCCHHHHhh
Confidence                   000011111100 00 000111       12345667999999999999999986

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.77  E-value=1.3e-19  Score=180.91  Aligned_cols=111  Identities=23%  Similarity=0.298  Sum_probs=87.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++ ++.+.+...  ...+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        72 ~~~~~~lv~e~~~~-~l~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~  148 (292)
T 3o0g_A           72 SDKKLTLVFEFCDQ-DLKKYFDSC--NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLA  148 (292)
T ss_dssp             ETTEEEEEEECCSE-EHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             eCCEEEEEEecCCC-CHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccc
Confidence            35678999999996 565555432  2358888888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cC-CCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-RYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      +.......       ......||+.|+| |.  .. .++.++|||||||+++||+||+.|+..
T Consensus       149 ~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~  204 (292)
T 3o0g_A          149 RAFGIPVR-------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  204 (292)
T ss_dssp             EECCSCCS-------CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred             eecCCccc-------cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcC
Confidence            87654321       2345678999977 86  33 479999999999999999999988643

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.77  E-value=4e-19  Score=180.04  Aligned_cols=161  Identities=22%  Similarity=0.242  Sum_probs=114.3

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC---eeeccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT---AYVGDFGL  452 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~---~kl~DfGl  452 (614)
                      +..++||||+++|+|.+++...   ..+++.....++.++                  |+||+++.++.   +||+|||+
T Consensus        87 ~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~  163 (322)
T 2ycf_A           87 EDYYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGH  163 (322)
T ss_dssp             SSEEEEEECCTTEETHHHHSTT---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTT
T ss_pred             CceEEEEecCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCcc
Confidence            3479999999999999999753   358888888777776                  99999987654   99999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ++.....        .......||+.|+| |.     ...++.++|||||||+++||++|+.||........ +......
T Consensus       164 ~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~  234 (322)
T 2ycf_A          164 SKILGET--------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-LKDQITS  234 (322)
T ss_dssp             CEECCCC--------HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC-HHHHHHH
T ss_pred             ceecccc--------cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH-HHHHHHh
Confidence            9876532        12334679999977 86     35678999999999999999999999975322211 1111111


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .......+.                      ..+....+.++...|++.+|++||++.|+++
T Consensus       235 ~~~~~~~~~----------------------~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          235 GKYNFIPEV----------------------WAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             TCCCCCHHH----------------------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CccccCchh----------------------hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            100000000                      0111223456778999999999999999985

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.76  E-value=8.4e-19  Score=181.29  Aligned_cols=106  Identities=23%  Similarity=0.222  Sum_probs=78.6

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++|||||++ +|.+++..     .+++.....++.++                  |+|||++.++.+||+|||+++.
T Consensus       103 ~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  176 (371)
T 2xrw_A          103 QDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  176 (371)
T ss_dssp             CEEEEEEECCSE-EHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred             cceEEEEEcCCC-CHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence            467999999985 88888853     37888877777776                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .....        ......||+.|+| |.  ...++.++||||+||+++||+||+.||...
T Consensus       177 ~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  229 (371)
T 2xrw_A          177 AGTSF--------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  229 (371)
T ss_dssp             ---------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccc--------ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            64321        2334689999977 87  667899999999999999999999999753

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.76  E-value=3.6e-19  Score=183.33  Aligned_cols=183  Identities=20%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             ceeEEecccCCCchhhhccC-CCCCcccCHHHHHHHHhhC--------------------CCceeeCC-CCCeeeccccc
Q 046036          395 FKALAFEFMPNGSLESWLHP-NEATRRLDLAEGLKIAVDI--------------------PSNVLLDY-DMTAYVGDFGL  452 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~-~~~~~~l~~~~~~~ia~~i--------------------~~NILld~-~~~~kl~DfGl  452 (614)
                      ..++||||+++ +|.+.+.. ......+++.....++.++                    |+|||++. ++.+||+|||+
T Consensus       100 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~  178 (360)
T 3e3p_A          100 YLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGS  178 (360)
T ss_dssp             EEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCTT
T ss_pred             eEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCC
Confidence            47899999997 44443321 1123356666666555544                    99999997 89999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ++.......        .....||++|+| |.   ...++.++|||||||++|||+||+.||...... ..+....+...
T Consensus       179 a~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~-~~~~~~~~~~~  249 (360)
T 3e3p_A          179 AKKLSPSEP--------NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA-GQLHEIVRVLG  249 (360)
T ss_dssp             CBCCCTTSC--------CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHC
T ss_pred             ceecCCCCC--------cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH-HHHHHHHHHcC
Confidence            987764422        234678999977 86   345899999999999999999999999763221 11222222111


Q ss_pred             CCChHHHHHHHHhcCcCCC--CCCchhhHHHH----HHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKD--AEDEPCMKAKI----RECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~----~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .. ..+.+...-.......  ......+....    .+....+.++...|++.+|++|||+.|+++
T Consensus       250 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          250 CP-SREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             CC-CHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CC-CHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence            11 1111111100000000  00000011000    012345667888999999999999999985

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.76  E-value=1.5e-19  Score=183.41  Aligned_cols=112  Identities=20%  Similarity=0.247  Sum_probs=92.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .....++||||++ |+|.+++.... ...+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        90 ~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~  167 (326)
T 1blx_A           90 RETKLTLVFEHVD-QDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  167 (326)
T ss_dssp             SEEEEEEEEECCS-CBHHHHHHHSC-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             CCceEEEEEecCC-CCHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCccc
Confidence            3566899999999 69999997542 3358898888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +.....        .......||+.|+| |.  ...++.++|||||||+++||+||+.||...
T Consensus       168 ~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  222 (326)
T 1blx_A          168 RIYSFQ--------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  222 (326)
T ss_dssp             CCCCGG--------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccCC--------CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence            866432        12334678999977 87  667899999999999999999999999753

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.76  E-value=2.3e-19  Score=186.45  Aligned_cols=192  Identities=17%  Similarity=0.145  Sum_probs=121.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeC-CCCCeeecccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLD-YDMTAYVGDFG  451 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld-~~~~~kl~DfG  451 (614)
                      .+...++|||||+ |+|.+.+.... ....+++..+..++.++                  |+|||++ .++.+||+|||
T Consensus       109 ~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg  187 (383)
T 3eb0_A          109 QNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFG  187 (383)
T ss_dssp             -CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEETTTTEEEECCCT
T ss_pred             CceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcCCCCcEEEEECC
Confidence            3456789999999 58888776311 23468888888887777                  9999998 68899999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +++.+.....        .....||+.|+| |.   ...++.++||||+||+++||++|+.||...... ..+...+...
T Consensus       188 ~a~~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~i~~~~  258 (383)
T 3eb0_A          188 SAKKLIPSEP--------SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSI-DQLVRIIQIM  258 (383)
T ss_dssp             TCEECCTTSC--------CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHH
T ss_pred             CCcccCCCCC--------CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHh
Confidence            9987654422        234678999977 86   345899999999999999999999999764221 1122222221


Q ss_pred             CCCChHHHHHHHHhcCcC---CCCCCchhhHHHH-HHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHhHH
Q 046036          528 LPESVMELVYSRLLQGVD---KDAEDEPCMKAKI-RECLTSLGRIGIASLTETPNERMGVREMVM--EMNVIKE  595 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~-~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i~~  595 (614)
                      -......+. . +.....   ........+...+ ......+.++...|++.+|++|||+.|+++  .++.++.
T Consensus       259 g~p~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          259 GTPTKEQMI-R-MNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRN  330 (383)
T ss_dssp             CCCCHHHHH-H-HCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred             CCCCHHHHH-H-hCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHHh
Confidence            111111111 1 100000   0000000011000 001223556778999999999999999995  4555544

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.76  E-value=7.6e-19  Score=180.39  Aligned_cols=109  Identities=21%  Similarity=0.298  Sum_probs=89.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee---------------
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL---------------  439 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl---------------  439 (614)
                      .+..++||||+ +|++.+++.... ...+++..+..++.++                  |+|||+               
T Consensus        94 ~~~~~lv~e~~-~~~l~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~  171 (355)
T 2eu9_A           94 HGHMCIAFELL-GKNTFEFLKENN-FQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSC  171 (355)
T ss_dssp             TTEEEEEEECC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred             CCeEEEEEecc-CCChHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccc
Confidence            56789999999 567777776542 3468999888888887                  999999               


Q ss_pred             ----CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          440 ----DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       440 ----d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                          +.++.+||+|||+++.....          .....||+.|+| |.  ...++.++|||||||+++||+||+.||..
T Consensus       172 ~~~~~~~~~~kl~Dfg~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  241 (355)
T 2eu9_A          172 EEKSVKNTSIRVADFGSATFDHEH----------HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT  241 (355)
T ss_dssp             CEEEESCCCEEECCCTTCEETTSC----------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             cccccCCCcEEEeecCcccccccc----------ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence                66789999999999865432          234679999977 87  66789999999999999999999999975


Q ss_pred             c
Q 046036          513 M  513 (614)
Q Consensus       513 ~  513 (614)
                      .
T Consensus       242 ~  242 (355)
T 2eu9_A          242 H  242 (355)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.76  E-value=2.2e-19  Score=182.47  Aligned_cols=112  Identities=20%  Similarity=0.231  Sum_probs=83.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceee-----CCCCCeee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL-----DYDMTAYV  447 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILl-----d~~~~~kl  447 (614)
                      ..++..++||||++ |+|.+++....   .+++..+..|+.++                  |+|||+     ++++.+||
T Consensus       103 ~~~~~~~lv~e~~~-~~L~~~~~~~~---~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl  178 (329)
T 3gbz_A          103 HHNHRLHLIFEYAE-NDLKKYMDKNP---DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKI  178 (329)
T ss_dssp             EETTEEEEEEECCS-EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEE
T ss_pred             ecCCEEEEEEecCC-CCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEE
Confidence            34567899999999 49999997542   48888888887777                  999999     45566999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +|||+++.......       ......||+.|+| |.  . ..++.++|||||||+++||++|+.||...
T Consensus       179 ~Dfg~a~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  241 (329)
T 3gbz_A          179 GDFGLARAFGIPIR-------QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD  241 (329)
T ss_dssp             CCTTHHHHHC------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CcCCCccccCCccc-------ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC
Confidence            99999987654321       2344678999977 87  2 45899999999999999999999999753

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.76  E-value=1.1e-18  Score=182.06  Aligned_cols=111  Identities=20%  Similarity=0.281  Sum_probs=88.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCC---------
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDM---------  443 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~---------  443 (614)
                      .....++||||+ +|+|.+++.... ...+++..+..|+.++                   |+|||++.++         
T Consensus       116 ~~~~~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~  193 (397)
T 1wak_A          116 NGTHICMVFEVL-GHHLLKWIIKSN-YQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAE  193 (397)
T ss_dssp             TEEEEEEEECCC-CCBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHH
T ss_pred             CCceEEEEEecc-CccHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhh
Confidence            345789999999 556666665432 3458888888887766                   9999999775         


Q ss_pred             ----------------------------------------CeeecccccccccCCCCCCCCCCCcCcccccccccccc-c
Q 046036          444 ----------------------------------------TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-E  482 (614)
Q Consensus       444 ----------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E  482 (614)
                                                              .+||+|||+++.....          .....||+.|+| |
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----------~~~~~gt~~y~aPE  263 (397)
T 1wak_A          194 ATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----------FTEDIQTRQYRSLE  263 (397)
T ss_dssp             HC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----------SCSCCSCGGGCCHH
T ss_pred             hHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----------CccCCCCCcccCCh
Confidence                                                    8999999999876543          233579999977 8


Q ss_pred             c--cCCCCccCceeehhHHHHHHHhCCCCCCccc
Q 046036          483 W--VARYQHKGKGYSCGILLLEIMTGKRPTDEMF  514 (614)
Q Consensus       483 ~--~~~~~~k~DVySfGvvllElltG~~p~~~~~  514 (614)
                      .  ...++.++|||||||++|||+||+.||....
T Consensus       264 ~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  297 (397)
T 1wak_A          264 VLIGSGYNTPADIWSTACMAFELATGDYLFEPHS  297 (397)
T ss_dssp             HHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCC
T ss_pred             hhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCc
Confidence            7  6678999999999999999999999997643

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.76  E-value=1.5e-18  Score=172.78  Aligned_cols=162  Identities=18%  Similarity=0.209  Sum_probs=116.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC---CCeeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD---MTAYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~---~~~kl~Df  450 (614)
                      ..+..++||||+++|+|.+++...   ..+++..+..++.++                  |+||+++.+   +.+||+||
T Consensus        92 ~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Df  168 (287)
T 2wei_A           92 DSSSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDF  168 (287)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECST
T ss_pred             CCCeEEEEEEccCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEecc
Confidence            456789999999999999998743   358888888888877                  999999764   47999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      |+++......        ......||+.|+| |. .+.++.++||||||++++||++|+.||.....             
T Consensus       169 g~~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-------------  227 (287)
T 2wei_A          169 GLSTCFQQNT--------KMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE-------------  227 (287)
T ss_dssp             TGGGTBCCCS--------SCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------------
T ss_pred             CcceeecCCC--------ccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCH-------------
Confidence            9998765432        1234578999977 87 66789999999999999999999999975321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          .+....................       ...+.++...|++.+|++|||+.|+++
T Consensus       228 ----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          228 ----YDILKRVETGKYAFDLPQWRTI-------SDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             ----HHHHHHHHHCCCCCCSGGGTTS-------CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ----HHHHHHHHcCCCCCCchhhhhc-------CHHHHHHHHHHcccChhhCcCHHHHhc
Confidence                1111111111111111100011       123446777999999999999999986

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.76  E-value=9.1e-19  Score=180.60  Aligned_cols=181  Identities=19%  Similarity=0.138  Sum_probs=118.7

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||++ |+|.+++...    .+++..+..++.++                  |+|||++.++.+||+|||+++.
T Consensus       103 ~~~~iv~e~~~-~~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~  177 (364)
T 3qyz_A          103 KDVYIVQDLME-TDLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARV  177 (364)
T ss_dssp             CCEEEEEECCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             ceEEEEEcccC-cCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEe
Confidence            45799999999 5999999643    48888888888777                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......    .......+||++|+| |.   ...++.++||||+||+++||+||+.||....... .+...........
T Consensus       178 ~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~  252 (364)
T 3qyz_A          178 ADPDHDH----TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGILGSPS  252 (364)
T ss_dssp             CCGGGCB----CCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHHCSCC
T ss_pred             cCCCCCc----cccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHhCCCC
Confidence            6543221    111344689999977 86   4458999999999999999999999997643221 1111111111111


Q ss_pred             hHHH--------HHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMEL--------VYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       .+.        ............   ...+.......-..+.++...|++.+|++|||+.|+++
T Consensus       253 -~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          253 -QEDLNCIINLKARNYLLSLPHKN---KVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             -HHHHHTCCCHHHHHHHHTSCCCC---CCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -HHHHHHhhhhhHHHHHHhcCCcc---CCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence             010        011111110000   00111111111234557778999999999999999985

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.75  E-value=1.4e-18  Score=179.29  Aligned_cols=176  Identities=16%  Similarity=0.147  Sum_probs=115.2

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||| +++|.+++...    .+++.....++.++                  |+|||++.++.+||+|||+++.
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  177 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  177 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             ceEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence            3469999999 78999999742    47888877777776                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC-CC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL-PE  530 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~-~~  530 (614)
                      ....          .+...||++|+| |.  . ..++.++||||+||+++||++|+.||....... .+........ +.
T Consensus       178 ~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~~g~~~  246 (367)
T 1cm8_A          178 ADSE----------MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD-QLKEIMKVTGTPP  246 (367)
T ss_dssp             CCSS----------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCC
T ss_pred             cccc----------cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCC
Confidence            5432          234678999976 87  3 678999999999999999999999997532211 1111111111 10


Q ss_pred             -Ch-----HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 -SV-----MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 -~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                       ..     .+.....+... ...+...  +.......-..+.++...|++.||++|||+.|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          247 AEFVQRLQSDEAKNYMKGL-PELEKKD--FASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             HHHHHTCSCHHHHHHHHHS-CCCCCCC--GGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHhC-CCCCCCC--HHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence             00     01111111111 0000000  00000111223446777999999999999999986

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.75  E-value=1e-18  Score=173.76  Aligned_cols=156  Identities=13%  Similarity=0.135  Sum_probs=110.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC------------------CCceeeCC-----------
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI------------------PSNVLLDY-----------  441 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i------------------~~NILld~-----------  441 (614)
                      .++..++||||+++|+|.+++.... ....+++..+..++.++                  |+||+++.           
T Consensus        82 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~  161 (289)
T 1x8b_A           82 EDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEG  161 (289)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC------------
T ss_pred             cCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCccccccc
Confidence            3567899999999999999997532 12458899888888887                  99999984           


Q ss_pred             --------CCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCC
Q 046036          442 --------DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRP  509 (614)
Q Consensus       442 --------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p  509 (614)
                              ...+|++|||.++......           ...||+.|+| |.   ...++.++|||||||+++||++|+.|
T Consensus       162 ~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~  230 (289)
T 1x8b_A          162 DEDDWASNKVMFKIGDLGHVTRISSPQ-----------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPL  230 (289)
T ss_dssp             --------CCCEEECCCTTCEETTCSC-----------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             ccccccCCceEEEEcccccccccCCcc-----------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCC
Confidence                    4479999999998765432           2458999977 77   23566899999999999999999887


Q ss_pred             CCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          510 TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       510 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      +...    ....                ..........+..   .       ...+.++...|++.+|++|||+.|+++
T Consensus       231 ~~~~----~~~~----------------~~~~~~~~~~~~~---~-------~~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          231 PRNG----DQWH----------------EIRQGRLPRIPQV---L-------SQEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             CSSS----HHHH----------------HHHTTCCCCCSSC---C-------CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             Ccch----hHHH----------------HHHcCCCCCCCcc---c-------CHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence            6431    0010                1111111111110   1       112345667999999999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=175.33  Aligned_cols=184  Identities=16%  Similarity=0.187  Sum_probs=115.9

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC-CCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD-YDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld-~~~~~kl~DfG  451 (614)
                      ...+..++||||++ |+|.+++...    .+++..+..++.++                  |+||+++ +++.+||+|||
T Consensus        92 ~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg  166 (320)
T 2i6l_A           92 TELNSVYIVQEYME-TDLANVLEQG----PLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFG  166 (320)
T ss_dssp             CSCSEEEEEEECCS-EEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCT
T ss_pred             cccCceeEEeeccC-CCHHHHhhcC----CccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCc
Confidence            34567899999998 6999999642    47888887777776                  9999997 56799999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +++........    ........||+.|+| |.   ...++.++|||||||+++||+||+.||......  .........
T Consensus       167 ~~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~~~~~~  240 (320)
T 2i6l_A          167 LARIMDPHYSH----KGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL--EQMQLILES  240 (320)
T ss_dssp             TCBCC------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHH
T ss_pred             cccccCCCccc----ccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHh
Confidence            99876533211    112334678999977 76   367899999999999999999999999754221  111111111


Q ss_pred             CCCChHHHHHHHH-------hcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRL-------LQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .+....+......       ..... .+...  ...........+.++...|++.+|++|||+.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          241 IPVVHEEDRQELLSVIPVYIRNDMT-EPHKP--LTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             SCCCCHHHHHHHHTTSCHHHHHHTT-SCCCC--HHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cCCCchhhhhhhhhcCccccccccc-CCCCC--hhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence            1111111111100       00000 00000  00000112234556788999999999999999985

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.75  E-value=2.3e-18  Score=172.87  Aligned_cols=163  Identities=19%  Similarity=0.228  Sum_probs=112.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++| |.+++.... ...+++..+..++.++                  |+||+++.++.+|++|||++
T Consensus        79 ~~~~~~lv~e~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~  156 (305)
T 2wtk_C           79 EKQKMYMVMEYCVCG-MQEMLDSVP-EKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVA  156 (305)
T ss_dssp             ---CEEEEEECCSEE-HHHHHHHST-TCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CCCeEEEEehhccCC-HHHHHHhCc-ccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccc
Confidence            345689999999987 777765432 3468898888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-c---CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V---ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~---~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +........     .......||+.|+| |. .   ...+.++|||||||+++||++|+.||.....             
T Consensus       157 ~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-------------  218 (305)
T 2wtk_C          157 EALHPFAAD-----DTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI-------------  218 (305)
T ss_dssp             EECCTTCSS-----CEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH-------------
T ss_pred             cccCccccc-----cccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH-------------
Confidence            876543211     12234679999977 87 2   2347899999999999999999999975211             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                          .+........... .+..          ....+.++...|++.+|++|||++|+++.
T Consensus       219 ----~~~~~~i~~~~~~-~~~~----------~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          219 ----YKLFENIGKGSYA-IPGD----------CGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             ----HHHHHHHHHCCCC-CCSS----------SCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             ----HHHHHHHhcCCCC-CCCc----------cCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence                1111111111111 1111          11123456779999999999999999863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.1e-19  Score=182.63  Aligned_cols=102  Identities=9%  Similarity=-0.012  Sum_probs=66.8

Q ss_pred             CCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccch-HHhccCccccccCCccccCCCccceE
Q 046036          170 FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFE-HLLLGGNMFQGRIPPFFGSFKGTIDL  248 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L  248 (614)
                      +++|+.|+|++|+++...+..|.++.+|+.|+|++| ++.+.+.+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            456666666666666555556666666666666666 5555566666666666 666666 5554555666667777777


Q ss_pred             EccCCcCcccCCcccCCCCCCCEEE
Q 046036          249 NLSHNNLSGTIPKELETLPFLENLN  273 (614)
Q Consensus       249 ~Ls~N~l~~~~p~~~~~l~~L~~L~  273 (614)
                      ++++|+++...+..|.++++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            7766766666666666676666665

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.75  E-value=3.3e-19  Score=178.84  Aligned_cols=163  Identities=16%  Similarity=0.193  Sum_probs=111.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||++
T Consensus        87 ~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  164 (302)
T 2j7t_A           87 HDGKLWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVS  164 (302)
T ss_dssp             CC-CEEEEEECCTTEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred             eCCeEEEEEEeCCCCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCC
Confidence            356789999999999999998642  2358888888888777                  99999999999999999998


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      .......       .......||+.|+| |.       ...++.++|||||||+++||+||+.||......         
T Consensus       165 ~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---------  228 (302)
T 2j7t_A          165 AKNLKTL-------QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM---------  228 (302)
T ss_dssp             HHHHHHH-------HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH---------
T ss_pred             ccccccc-------cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHH---------
Confidence            6432211       11223578999977 75       346788999999999999999999999753211         


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              +.......... +.......+       ...+.++...|++.+|++|||+.|+++
T Consensus       229 --------~~~~~~~~~~~-~~~~~~~~~-------~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          229 --------RVLLKIAKSDP-PTLLTPSKW-------SVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             --------HHHHHHHHSCC-CCCSSGGGS-------CHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             --------HHHHHHhccCC-cccCCcccc-------CHHHHHHHHHHcccChhhCCCHHHHhc
Confidence                    11111111111 000011111       123445677999999999999999975

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.74  E-value=4.7e-19  Score=178.74  Aligned_cols=162  Identities=20%  Similarity=0.285  Sum_probs=107.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||| +.+|+|.+++...   ..+++..+..++.++                  |+||++++ +.+||+|||++
T Consensus        99 ~~~~~~lv~e-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~  173 (313)
T 3cek_A           99 TDQYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVD-GMLKLIDFGIA  173 (313)
T ss_dssp             CSSEEEEEEC-CCSEEHHHHHHHC---SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEET-TEEEECCCSSS
T ss_pred             cCCEEEEEEe-cCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEEC-CeEEEeecccc
Confidence            4567899999 6778999999854   358888888887777                  99999975 89999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-c------------CCCCccCceeehhHHHHHHHhCCCCCCcccccCch
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-V------------ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLS  519 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~------------~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~  519 (614)
                      +........     .......||+.|+| |. .            ..++.++|||||||+++||+||+.||.......  
T Consensus       174 ~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~--  246 (313)
T 3cek_A          174 NQMQPDTTS-----VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI--  246 (313)
T ss_dssp             CC-------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH--
T ss_pred             ccccCcccc-----ccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHH--
Confidence            876543221     12234679999977 87 2            368889999999999999999999997532211  


Q ss_pred             HHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          520 LHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       520 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                    ..+...+...........         ....+.++...|++.+|++||++.|+++
T Consensus       247 --------------~~~~~~~~~~~~~~~~~~---------~~~~l~~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          247 --------------SKLHAIIDPNHEIEFPDI---------PEKDLQDVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             --------------HHHHHHHCTTSCCCCCCC---------SCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             --------------HHHHHHHhcccccCCccc---------chHHHHHHHHHHccCCcccCcCHHHHhc
Confidence                          111111111111000000         0113445677999999999999999986

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.74  E-value=1.4e-18  Score=179.01  Aligned_cols=182  Identities=16%  Similarity=0.112  Sum_probs=112.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||++ |+|.+++...  ...+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus       106 ~~~~~lv~e~~~-~~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  182 (362)
T 3pg1_A          106 MHKLYLVTELMR-TDLAQVIHDQ--RIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAR  182 (362)
T ss_dssp             CCEEEEEEECCS-EEHHHHHHCT--TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCTTC--
T ss_pred             cceEEEEEccCC-CCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEEEecCccc
Confidence            346799999999 6999988753  3468898888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ......        ......||+.|+| |.  . ..++.++||||+||+++||+||+.||...... ..+..........
T Consensus       183 ~~~~~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~~  253 (362)
T 3pg1_A          183 EDTADA--------NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFY-NQLNKIVEVVGTP  253 (362)
T ss_dssp             ---------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCC
T ss_pred             cccccc--------ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHcCCC
Confidence            554332        2344679999977 86  2 67899999999999999999999999763221 1111222211111


Q ss_pred             ChHH-------HHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 SVME-------LVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ...+       .....+.......+...  +.......-..+.++...|++.+|++|||+.|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          254 KIEDVVMFSSPSARDYLRNSLSNVPARA--WTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             CHHHHHHTSCHHHHHHTTTCCCCCCCCC--HHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ChHHhhhccchhhhHHHHhhcccCChhh--HHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence            1111       11111111111111111  11111112234557788999999999999999985

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.74  E-value=2.4e-18  Score=176.32  Aligned_cols=176  Identities=19%  Similarity=0.197  Sum_probs=115.5

Q ss_pred             CCCceeEEecccCCCchhhh------ccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCee
Q 046036          392 GNDFKALAFEFMPNGSLESW------LHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAY  446 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~------L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~k  446 (614)
                      ..+..++||||+++|+|.++      +... ....+++..+..++.++                   |+||+++.++.+|
T Consensus       114 ~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~~~k  192 (348)
T 2pml_X          114 NYDEVYIIYEYMENDSILKFDEYFFVLDKN-YTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVK  192 (348)
T ss_dssp             SSSEEEEEEECCTTCBSSEESSSEESSCSS-SCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTSCEE
T ss_pred             eCCeEEEEEeccCCCcHHHHHHHhhhhhhc-cccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCCCcEE
Confidence            45678999999999999999      5542 24568898888877666                   8999999999999


Q ss_pred             ecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cC-CCCc-cCceeehhHHHHHHHhCCCCCCcccccCchHH
Q 046036          447 VGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VA-RYQH-KGKGYSCGILLLEIMTGKRPTDEMFADCLSLH  521 (614)
Q Consensus       447 l~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~-~~~~-k~DVySfGvvllElltG~~p~~~~~~~~~~l~  521 (614)
                      |+|||+++.....         ......||+.|+| |.  .. .++. ++|||||||+++||+||+.||...... ....
T Consensus       193 l~dfg~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~  262 (348)
T 2pml_X          193 LSDFGESEYMVDK---------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL-VELF  262 (348)
T ss_dssp             ECCCTTCEECBTT---------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-HHHH
T ss_pred             Eeccccccccccc---------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-HHHH
Confidence            9999999876433         1334679999976 87  22 4555 999999999999999999999753221 1111


Q ss_pred             HHHHhh---CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          522 NFCEMA---LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       522 ~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..+...   ++.......     ...     ............-..+.++...|++.+|++|||+.|+++
T Consensus       263 ~~i~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          263 NNIRTKNIEYPLDRNHFL-----YPL-----TNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             HHHTSCCCCCCCSSSSST-----TTT-----CC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHhccCcCCccchhhhh-----ccc-----cccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            111100   000000000     000     000000000111223456777999999999999999986

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.74  E-value=5.6e-19  Score=178.73  Aligned_cols=152  Identities=20%  Similarity=0.194  Sum_probs=112.4

Q ss_pred             CCCCceeEEecccCC-CchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC-CCCCeeeccc
Q 046036          391 GGNDFKALAFEFMPN-GSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD-YDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~-GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld-~~~~~kl~Df  450 (614)
                      ..++..++||||+.. |+|.+++...   ..+++..+..++.++                  |+||+++ +++.+||+||
T Consensus       118 ~~~~~~~lv~e~~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Df  194 (320)
T 3a99_A          118 ERPDSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF  194 (320)
T ss_dssp             ECSSEEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred             ecCCcEEEEEEcCCCCccHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeC
Confidence            345678999999986 8999999753   358888888877776                  9999999 7899999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      |+++......         .....||+.|+| |+  ... .+.++|||||||++|||+||+.||.....       .   
T Consensus       195 g~~~~~~~~~---------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-------~---  255 (320)
T 3a99_A          195 GSGALLKDTV---------YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE-------I---  255 (320)
T ss_dssp             TTCEECCSSC---------BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-------H---
T ss_pred             cccccccccc---------ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh-------h---
Confidence            9998765432         234679999977 87  333 47889999999999999999999964210       0   


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                   ....... +.   ..       ...+.+++..|++.+|++|||+.|+++
T Consensus       256 -------------~~~~~~~-~~---~~-------~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          256 -------------IRGQVFF-RQ---RV-------SSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             -------------HHCCCCC-SS---CC-------CHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -------------hcccccc-cc---cC-------CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                         0000000 00   00       112345677999999999999999986

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.74  E-value=5.1e-19  Score=185.91  Aligned_cols=183  Identities=17%  Similarity=0.136  Sum_probs=114.8

Q ss_pred             CceeEEecccCCCchhhhccCC-CCCcccCHHHHHHHHhhC------------------CCceeeCCC-CCeeecccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPN-EATRRLDLAEGLKIAVDI------------------PSNVLLDYD-MTAYVGDFGLA  453 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~-~~~~~l~~~~~~~ia~~i------------------~~NILld~~-~~~kl~DfGla  453 (614)
                      .+.++||||+++ ++.+.+... .....+++..+..++.++                  |+|||++.+ +.+||+|||++
T Consensus       126 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a  204 (420)
T 1j1b_A          126 VYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA  204 (420)
T ss_dssp             EEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             eeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhh
Confidence            346799999997 666665421 123468888888777776                  999999965 56899999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.+.....        .....||++|+| |+  . ..++.++|||||||++|||++|+.||...... ..+.......-.
T Consensus       205 ~~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~-~~l~~i~~~lg~  275 (420)
T 1j1b_A          205 KQLVRGEP--------NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIKVLGT  275 (420)
T ss_dssp             EECCTTCC--------CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCS
T ss_pred             hhcccCCC--------ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCC
Confidence            87654321        234678999977 87  3 36899999999999999999999999763221 122222222111


Q ss_pred             CChHHHHHHHHhcCcCC--CCC-CchhhHHHH-HHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDK--DAE-DEPCMKAKI-RECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~--~~~-~~~~~~~~~-~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .. .+.+.. +......  .+. ....+...+ ...-..+.++..+|++.+|++|||+.|+++
T Consensus       276 p~-~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          276 PT-REQIRE-MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             CC-HHHHHH-HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CC-HHHHHh-hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence            11 111111 1111000  000 000010000 011134556778999999999999999985

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=1.2e-17  Score=155.57  Aligned_cols=129  Identities=25%  Similarity=0.331  Sum_probs=70.1

Q ss_pred             cEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCc-cccCCCCCCcccccccccccceEecCCCccccccchhhh
Q 046036           66 RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPF-SIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE  144 (614)
Q Consensus        66 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~  144 (614)
                      +.|++++|.++ .+|..+..  +|++|+|++|++++..+. .|+.+++|++|+            |++|+|++..|..|.
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~------------Ls~N~l~~~~~~~~~   75 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLE------------LKRNQLTGIEPNAFE   75 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEE------------CCSSCCCCBCTTTTT
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEE------------CCCCCCCCcCHhHcC
Confidence            44555555553 44443332  555555555555544332 245555555444            555555555555555


Q ss_pred             ccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCC
Q 046036          145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD  209 (614)
Q Consensus       145 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  209 (614)
                      .+++|++|+|++|+|++..+..+..+++|++|+|++|+|++..|..|..+++|++|+|++|.+++
T Consensus        76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            55555555555555555555555555556666666666655555555556666666666666554

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.74  E-value=1.8e-18  Score=178.82  Aligned_cols=173  Identities=16%  Similarity=0.170  Sum_probs=110.8

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccC
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      .++||||++ |+|.+++..     .+++..+..++.++                  |+||+++.++.+||+|||+++...
T Consensus       122 ~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          122 FYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             CEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             EEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence            489999999 699998853     38888888887777                  999999999999999999998654


Q ss_pred             CCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh-CCCC-
Q 046036          458 TNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA-LPES-  531 (614)
Q Consensus       458 ~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~-~~~~-  531 (614)
                      ..          .....||++|+| |.  . ..++.++||||+||+++||+||+.||....... .+....... .+.. 
T Consensus       196 ~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~  264 (371)
T 4exu_A          196 AE----------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTE  264 (371)
T ss_dssp             --------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCHH
T ss_pred             cC----------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCcHH
Confidence            32          234678999977 86  3 678999999999999999999999997532211 111111111 1100 


Q ss_pred             ----h-HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 ----V-MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ----~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          + .......+.. ....+..  .+.......-..+.++...|++.+|++|||++|+++
T Consensus       265 ~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          265 FVQKLNDKAAKSYIQS-LPQTPRK--DFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             HHTTCSCHHHHHHHHH-SCCCCCC--CHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHhhhhhhhhhhhc-cCCCcch--hHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence                0 0111111111 1111111  111111112234556778999999999999999985

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.74  E-value=3.3e-18  Score=182.13  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=83.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..|+||||+. |+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+++
T Consensus       129 ~~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  204 (458)
T 3rp9_A          129 FDELYVVLEIAD-SDFKKLFRTP---VYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLAR  204 (458)
T ss_dssp             CCCEEEEECCCS-EEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred             CceEEEEEeccc-cchhhhcccC---CCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccch
Confidence            356899999986 6999999753   358888888887777                  999999999999999999999


Q ss_pred             ccCCCCCCCCC--------------------CCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCC
Q 046036          455 FLPTNVTNPMK--------------------GQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKR  508 (614)
Q Consensus       455 ~~~~~~~~~~~--------------------~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~  508 (614)
                      ...........                    .....+..+||++|+| |+   ...++.++|||||||++|||+||..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~  282 (458)
T 3rp9_A          205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIK  282 (458)
T ss_dssp             CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTST
T ss_pred             hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcc
Confidence            76533211000                    0012345689999977 85   4568999999999999999999433

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.74  E-value=1.9e-18  Score=178.01  Aligned_cols=176  Identities=16%  Similarity=0.130  Sum_probs=103.5

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+ +|+|.+++..    ..+++..+..++.++                  |+|||++.++.+||+|||+++.
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~  181 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH  181 (367)
T ss_dssp             CCCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC------
T ss_pred             CeEEEEeccc-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeecccccc
Confidence            4579999999 6799999874    358888888887777                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC-CC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL-PE  530 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~-~~  530 (614)
                      ....          .+...||++|+| |.  . ..++.++||||+||+++||+||+.||.+.... ..+....+... |.
T Consensus       182 ~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~  250 (367)
T 2fst_X          182 TADE----------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPG  250 (367)
T ss_dssp             -------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCC
T ss_pred             cccc----------CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCC
Confidence            5432          234679999977 87  3 57899999999999999999999999753221 11111111111 10


Q ss_pred             -----C-hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 -----S-VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 -----~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           . ..+.....+.. ....+..  .+.......-..+.++...|++.+|++|||+.|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          251 AELLKKISSESARNYIQS-LTQMPKM--NFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             HHHHTTCCCHHHHHHHHT-SCCCCCC--CHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHhhhHHHHHHHhc-cCCCCCC--CHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence                 0 01111111111 1111111  111111111233456778999999999999999985

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.73  E-value=5.5e-19  Score=192.25  Aligned_cols=113  Identities=27%  Similarity=0.352  Sum_probs=93.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCC---eeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT---AYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~---~kl~Df  450 (614)
                      .++..++|||||++|+|.+++........+++..+..++.++                  |+||+++.++.   +||+||
T Consensus        89 ~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DF  168 (676)
T 3qa8_A           89 PNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDL  168 (676)
T ss_dssp             TTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred             CCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEccc
Confidence            356789999999999999999865444457877777777766                  99999997665   899999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      |+++.......        .....||++|+| |.  ...++.++|||||||++|||+||+.||..
T Consensus       169 G~a~~~~~~~~--------~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~  225 (676)
T 3qa8_A          169 GYAKELDQGEL--------CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP  225 (676)
T ss_dssp             CCCCBTTSCCC--------CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccccccccc--------cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCc
Confidence            99987754421        334689999976 87  67889999999999999999999999965

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.73  E-value=2e-18  Score=178.59  Aligned_cols=108  Identities=20%  Similarity=0.264  Sum_probs=86.1

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeC------CCCCeeec
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLD------YDMTAYVG  448 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld------~~~~~kl~  448 (614)
                      ...++||||+ +|+|.+++.... ...+++..+.+++.++                   |+|||++      ..+.+||+
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~  180 (373)
T 1q8y_A          103 VHVVMVFEVL-GENLLALIKKYE-HRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIA  180 (373)
T ss_dssp             EEEEEEECCC-CEEHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEEecC-CCCHHHHHHHhh-ccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEc
Confidence            3679999999 889999997542 3358888887777665                   9999994      44589999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |||+++.....          .....||+.|+| |.  ...++.++|||||||+++||+||+.||...
T Consensus       181 Dfg~a~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  238 (373)
T 1q8y_A          181 DLGNACWYDEH----------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD  238 (373)
T ss_dssp             CCTTCEETTBC----------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             ccccccccCCC----------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999876543          223578999977 87  667899999999999999999999999754

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.73  E-value=1.4e-18  Score=183.31  Aligned_cols=170  Identities=18%  Similarity=0.264  Sum_probs=102.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCC-ccc---CHHHHHHHHhhC------------------CCceeeCCC-------
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEAT-RRL---DLAEGLKIAVDI------------------PSNVLLDYD-------  442 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~-~~l---~~~~~~~ia~~i------------------~~NILld~~-------  442 (614)
                      .++..++|||||+ |+|.+++...... ...   .+..+.+++.++                  |+|||++.+       
T Consensus        80 ~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~  158 (434)
T 2rio_A           80 TDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQ  158 (434)
T ss_dssp             CSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCC
T ss_pred             cCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCccccccc
Confidence            4567899999996 6999999764311 111   222223344444                  999999754       


Q ss_pred             ------CCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--c-------CCCCccCceeehhHHHHHHHh-
Q 046036          443 ------MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-------ARYQHKGKGYSCGILLLEIMT-  505 (614)
Q Consensus       443 ------~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-------~~~~~k~DVySfGvvllEllt-  505 (614)
                            +.+||+|||+++........   .........||++|+| |.  .       ..++.++|||||||+++||+| 
T Consensus       159 ~~~~~~~~~kL~DFG~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~  235 (434)
T 2rio_A          159 QTGAENLRILISDFGLCKKLDSGQSS---FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSK  235 (434)
T ss_dssp             TTCCCSCEEEECCCTTCEECCC-----------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCceEEEEcccccceecCCCCcc---ceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhC
Confidence                  58999999999987654321   0011234689999977 86  2       568899999999999999999 


Q ss_pred             CCCCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHH
Q 046036          506 GKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVRE  585 (614)
Q Consensus       506 G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~e  585 (614)
                      |+.||.......   ....                ............. .   ......+.+++..|++.+|++|||+.|
T Consensus       236 g~~Pf~~~~~~~---~~i~----------------~~~~~~~~~~~~~-~---~~~~~~~~~li~~~L~~dP~~Rps~~e  292 (434)
T 2rio_A          236 GKHPFGDKYSRE---SNII----------------RGIFSLDEMKCLH-D---RSLIAEATDLISQMIDHDPLKRPTAMK  292 (434)
T ss_dssp             SCCTTCSTTTHH---HHHH----------------HTCCCCCCCTTCC-C---HHHHHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCCCchhhH---HHHh----------------cCCCCcccccccc-c---ccchHHHHHHHHHHhhCChhhCCCHHH
Confidence            999997532211   1111                1111100000000 0   122234556788999999999999999


Q ss_pred             HHH
Q 046036          586 MVM  588 (614)
Q Consensus       586 v~~  588 (614)
                      |++
T Consensus       293 il~  295 (434)
T 2rio_A          293 VLR  295 (434)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            985

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.73  E-value=3.4e-18  Score=175.48  Aligned_cols=187  Identities=17%  Similarity=0.131  Sum_probs=116.5

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++||||++ |+|.+++...    .+++..+..++.++                  |+||+++.++.+||+|||+++
T Consensus        86 ~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  160 (353)
T 2b9h_A           86 FNEVYIIQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLAR  160 (353)
T ss_dssp             CCCEEEEECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             cceEEEEEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence            456899999998 5999998743    48888888888777                  999999999999999999998


Q ss_pred             ccCCCCCCCC---CCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh-
Q 046036          455 FLPTNVTNPM---KGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM-  526 (614)
Q Consensus       455 ~~~~~~~~~~---~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~-  526 (614)
                      ..........   ..........||+.|+| |.   ...++.++|||||||+++||++|+.||........ +...... 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~  239 (353)
T 2b9h_A          161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQ-LLLIFGII  239 (353)
T ss_dssp             ECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHH
T ss_pred             ccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHHHh
Confidence            7654321100   00011234579999977 86   46789999999999999999999999975422111 1111110 


Q ss_pred             hCCC--C-----hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPE--S-----VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ..+.  .     ........+... ...+..  ............+.++...|++.+|++|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          240 GTPHSDNDLRCIESPRAREYIKSL-PMYPAA--PLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             CCCCSTTTTTTCCCHHHHHHHHTS-CCCCCC--CHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCchhccccccccchhhHHhhcc-cCCCCc--chhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            0110  0     001111111111 000000  000000112234456778999999999999999986

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.73  E-value=1.4e-18  Score=181.85  Aligned_cols=117  Identities=16%  Similarity=0.203  Sum_probs=83.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCC------CCcccCHHHHHHHHhhC------------------CCceee----CCCC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNE------ATRRLDLAEGLKIAVDI------------------PSNVLL----DYDM  443 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~------~~~~l~~~~~~~ia~~i------------------~~NILl----d~~~  443 (614)
                      .....++||||+++ +|.+++....      ....+++..+..|+.++                  |+|||+    +.++
T Consensus        91 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~  169 (405)
T 3rgf_A           91 ADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERG  169 (405)
T ss_dssp             TTTEEEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTT
T ss_pred             CCCeEEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCC
Confidence            45678999999985 8888875321      12348888888888777                  999999    7789


Q ss_pred             CeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          444 TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       444 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .+||+|||+++........    .......+||++|+| |.  . ..++.++|||||||++|||+||+.||...
T Consensus       170 ~~kl~Dfg~a~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          170 RVKIADMGFARLFNSPLKP----LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             CEEECCTTCCC--------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             cEEEEECCCceecCCCCcc----cccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999876543211    112345789999977 87  3 45899999999999999999999999753

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.73  E-value=2.6e-18  Score=181.30  Aligned_cols=115  Identities=20%  Similarity=0.228  Sum_probs=85.7

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..|+|||||+ |+|.+++...   ..+++..+..++.++                  |+|||++.++.+||+|||+++.
T Consensus       103 ~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~  178 (432)
T 3n9x_A          103 DELYIVLEIAD-SDLKKLFKTP---IFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLART  178 (432)
T ss_dssp             CCEEEEEECCS-EEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             CeEEEEEecCC-cCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence            56899999998 5999999753   358998888888877                  9999999999999999999997


Q ss_pred             cCCCCCCCC---------------CCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          456 LPTNVTNPM---------------KGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       456 ~~~~~~~~~---------------~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .........               ......+..+||++|+| |.   ...++.++||||+||+++||++|..|+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~  254 (432)
T 3n9x_A          179 INSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHIN  254 (432)
T ss_dssp             C-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCS
T ss_pred             ccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccc
Confidence            754321100               00012356789999977 85   55689999999999999999997666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=2.3e-20  Score=205.74  Aligned_cols=290  Identities=14%  Similarity=0.110  Sum_probs=168.7

Q ss_pred             CCCCCCeeeecCC-ccccc-CCcCCCCCCCCcEEecccccCcccCCcChhhhc-cccccccEEEccCCc--ccc-cCCCC
Q 046036            9 NLFRLQNLNFGNS-TVQGE-IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFT-NLSTKLRILDAGGNQ--FAG-DIPAG   82 (614)
Q Consensus         9 ~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~l~~~L~~L~L~~N~--l~~-~~p~~   82 (614)
                      .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+..+. .++ +|++|+|++|.  ++. .++..
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT-SLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC-CCCEEECTTCCSCCCHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC-cCcEEEecccCCcCCHHHHHHH
Confidence            4667777777766 44432 333334566777777777766654444433222 343 66666666665  211 01111


Q ss_pred             CcCCCCCCEEeccCC-cCcccCCcc------------------------------ccCCCCCCcc-cc-------ccc--
Q 046036           83 IPKYFNLIQLGLDRN-CLAGSIPFS------------------------------IGKLQNLQKL-NP-------LAT--  121 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N-~l~~~~p~~------------------------------~~~l~~L~~L-~l-------~~~--  121 (614)
                      +..+++|++|+|++| .++ .+|..                              +.++++|+.| .+       ++.  
T Consensus       207 ~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~  285 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY  285 (594)
T ss_dssp             HHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH
T ss_pred             HHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH
Confidence            223466666666665 222 23333                              3444444444 11       111  


Q ss_pred             --ccccceEecCCCccccccc-hhhhccCCCCeeecccccCCCC-CCCCCCCCCCCCEEEc---------CCCCCccCCc
Q 046036          122 --SLYSFQLNLAENNLTGNIP-ESLENLTSLQILNLSCNHLGGS-IPKPSGLFSTLSSIDF---------AHNNFNGSLP  188 (614)
Q Consensus       122 --~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L---------s~N~l~~~~~  188 (614)
                        .-+++.|+|++|.+++... ..+..+++|+.|++++| +... ++.....+++|++|++         +.+.+++...
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence              1278899999999875433 33568899999999988 4311 1222224678888888         3345554333


Q ss_pred             cccc-CCCCCceeccCCccCCCCcccccc-CcccchHHhcc--C----cccccc-----CCccccCCCccceEEccCCcC
Q 046036          189 LEVG-SLSNTQELDFSEHMLSDEIPITLG-NRSKFEHLLLG--G----NMFQGR-----IPPFFGSFKGTIDLNLSHNNL  255 (614)
Q Consensus       189 ~~~~-~l~~L~~L~ls~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l  255 (614)
                      ..+. .+++|+.|+++.|.+++.....+. .+++|+.|+++  +    |.++..     ++..+..+++|+.|+|++ .+
T Consensus       365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l  443 (594)
T 2p1m_B          365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL  443 (594)
T ss_dssp             HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred             HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence            3333 478888888888888765555554 47788888888  3    455421     112255677888888876 66


Q ss_pred             cccCCcccCC-CCCCCEEECcCCcCcccCC-Cc-cccCCCceEEEecCCC
Q 046036          256 SGTIPKELET-LPFLENLNLSFNNFEGQLP-SM-SVFTNTSVISIVGNGK  302 (614)
Q Consensus       256 ~~~~p~~~~~-l~~L~~L~ls~N~l~~~~p-~~-~~~~~l~~~~~~~N~~  302 (614)
                      ++..+..+.. +++|+.|++++|.+++... .. ..+++++.+++.+|+.
T Consensus       444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            6544444444 7778888888888764322 11 3367788888888764

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.73  E-value=1.6e-18  Score=174.79  Aligned_cols=152  Identities=20%  Similarity=0.265  Sum_probs=110.3

Q ss_pred             CCCCceeEEecc-cCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC-CCCCeeeccc
Q 046036          391 GGNDFKALAFEF-MPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD-YDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey-~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld-~~~~~kl~Df  450 (614)
                      ...+..++|||| +++|+|.+++...   ..+++..+..++.++                  |+||+++ .++.+||+||
T Consensus       108 ~~~~~~~~v~e~~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~df  184 (312)
T 2iwi_A          108 ETQEGFMLVLERPLPAQDLFDYITEK---GPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDF  184 (312)
T ss_dssp             -----CEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCC
T ss_pred             ecCCeEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEc
Confidence            445678999999 8999999999753   358899888888877                  9999999 8899999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCC-CccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARY-QHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~-~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      |+++......         .....||+.|+| |+  ...+ +.++|||||||+++||++|+.||....            
T Consensus       185 g~~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------------  243 (312)
T 2iwi_A          185 GSGALLHDEP---------YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------------  243 (312)
T ss_dssp             SSCEECCSSC---------BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------------
T ss_pred             chhhhcccCc---------ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH------------
Confidence            9998765432         234679999977 87  3333 568999999999999999999996421            


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             +...    ..... +.          ..-..+.+++..|++.+|++|||+.|+++
T Consensus       244 -------~~~~----~~~~~-~~----------~~~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          244 -------EILE----AELHF-PA----------HVSPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             -------HHHH----TCCCC-CT----------TSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -------HHhh----hccCC-cc----------cCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                   0000    00000 00          00112345677999999999999999986

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.73  E-value=6.5e-18  Score=169.27  Aligned_cols=169  Identities=21%  Similarity=0.319  Sum_probs=106.1

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      ..+..++||||+++|+|.+++...  ...+++....+++.++                  |+||+++.++.+||+|||++
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  163 (303)
T 1zy4_A           86 KKSTLFIQMEYCENGTLYDLIHSE--NLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLA  163 (303)
T ss_dssp             CEEEEEEEEECCCSCBHHHHHHHS--CGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCC
T ss_pred             cCCceEEEEecCCCCCHHHhhhcc--ccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcch
Confidence            356789999999999999999753  2357777777777666                  99999999999999999999


Q ss_pred             cccCCCCCCCC-------CCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          454 RFLPTNVTNPM-------KGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       454 ~~~~~~~~~~~-------~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      +..........       ..........||+.|+| |.   ...++.++|||||||++|||++   |+......      
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~------  234 (303)
T 1zy4_A          164 KNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMER------  234 (303)
T ss_dssp             SCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHH------
T ss_pred             hhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhH------
Confidence            87643211000       00112334679999977 87   3468999999999999999998   55421110      


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                .+.. ..+.......+..   ..   ......+.++...|++.+|++|||+.|+++
T Consensus       235 ----------~~~~-~~~~~~~~~~~~~---~~---~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          235 ----------VNIL-KKLRSVSIEFPPD---FD---DNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             ----------HHHH-HHHHSTTCCCCTT---CC---TTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ----------HHHH-HhccccccccCcc---cc---ccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence                      0011 1111111000100   00   011223446777999999999999999986

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.72  E-value=5.8e-18  Score=178.14  Aligned_cols=166  Identities=16%  Similarity=0.220  Sum_probs=101.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccC----HHHHHHHHhhC--------------CCceeeC-----CCCCeee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLD----LAEGLKIAVDI--------------PSNVLLD-----YDMTAYV  447 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~----~~~~~~ia~~i--------------~~NILld-----~~~~~kl  447 (614)
                      ..++..++|||||+ |+|.+++.....  .+.    +....+|+.++              |+|||++     ....+||
T Consensus        88 ~~~~~~~lv~E~~~-g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL  164 (432)
T 3p23_A           88 KDRQFQYIAIELCA-ATLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMI  164 (432)
T ss_dssp             EETTEEEEEEECCS-EEHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEE
T ss_pred             ecCCEEEEEEECCC-CCHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEE
Confidence            34567899999997 599999976431  122    22223333333              9999994     3346889


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSL  520 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l  520 (614)
                      +|||+++........    ........||++|+| |.     ...++.++|||||||+++||+| |+.||......    
T Consensus       165 ~DFG~a~~~~~~~~~----~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~----  236 (432)
T 3p23_A          165 SDFGLCKKLAVGRHS----FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR----  236 (432)
T ss_dssp             CCTTEEECC----------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH----
T ss_pred             ecccceeeccCCCcc----eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH----
Confidence            999999877543211    122345789999977 87     2456779999999999999999 89998642111    


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                    .....+... ........      ...-..+.+++..|++.+|++|||+.||++
T Consensus       237 --------------~~~~~~~~~-~~~~~~~~------~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          237 --------------QANILLGAC-SLDCLHPE------KHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             --------------HHHHHTTCC-CCTTSCTT------CHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             --------------HHHHHhccC-CccccCcc------ccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence                          000011110 00000000      011122346777999999999999999994

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.72  E-value=1.3e-20  Score=207.58  Aligned_cols=288  Identities=14%  Similarity=0.100  Sum_probs=186.0

Q ss_pred             CCCCCCeeeecCCcccccCCcCCC-CCCCCcEEecccc-cCcccCCcChhhhccccccccEEEccCCcccccCCCCC---
Q 046036            9 NLFRLQNLNFGNSTVQGEIPSHLS-PTSKLTYLSLFSN-NLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGI---   83 (614)
Q Consensus         9 ~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~---   83 (614)
                      ++++|++|+|++|.+++..+..+. .+++|++|+|++| .++......+  +.+++ +|++|+|++|.+++..+..+   
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~--~~~~~-~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI--AATCR-NLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH--HHHCT-TCCEEECTTCEEECCCGGGGGGS
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH--HHhCC-CCCEEeCcCCccCCcchHHHHHH
Confidence            467788888888877766666664 5778888888877 4543211121  33566 78888888888765443333   


Q ss_pred             -cCCCCCCEEeccCCc--Ccc-cCCccccCCCCCCcccccccc------------cccceEecCCCc-------------
Q 046036           84 -PKYFNLIQLGLDRNC--LAG-SIPFSIGKLQNLQKLNPLATS------------LYSFQLNLAENN-------------  134 (614)
Q Consensus        84 -~~l~~L~~L~L~~N~--l~~-~~p~~~~~l~~L~~L~l~~~~------------~~l~~L~L~~N~-------------  134 (614)
                       ..+++|++|+|++|.  ++. .++..+..+++|+.|++....            -+++.|+++.+.             
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence             356688888888776  221 112223446778877763320            156666654431             


Q ss_pred             -------------cc----cccchhhhccCCCCeeecccccCCCCC-CCCCCCCCCCCEEEcCCCCCccC-CcccccCCC
Q 046036          135 -------------LT----GNIPESLENLTSLQILNLSCNHLGGSI-PKPSGLFSTLSSIDFAHNNFNGS-LPLEVGSLS  195 (614)
Q Consensus       135 -------------l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~  195 (614)
                                   +.    ..++..+..+++|++|+|++|.+++.. ...+..+++|++|++++| ++.. ++.....++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence                         11    123444457899999999999976432 222457899999999998 5422 222234589


Q ss_pred             CCceecc---------CCccCCCCcccccc-CcccchHHhccCccccccCCcccc-CCCccceEEcc--C----CcCccc
Q 046036          196 NTQELDF---------SEHMLSDEIPITLG-NRSKFEHLLLGGNMFQGRIPPFFG-SFKGTIDLNLS--H----NNLSGT  258 (614)
Q Consensus       196 ~L~~L~l---------s~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~  258 (614)
                      +|++|++         +.+.+++.....+. .+++|+.|.++.|.+++.....+. .+++|+.|+++  +    |.++..
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            9999998         34566544333333 478999999999998866655555 58999999999  4    566632


Q ss_pred             -----CCcccCCCCCCCEEECcCCcCcccC-CCccc-cCCCceEEEecCC
Q 046036          259 -----IPKELETLPFLENLNLSFNNFEGQL-PSMSV-FTNTSVISIVGNG  301 (614)
Q Consensus       259 -----~p~~~~~l~~L~~L~ls~N~l~~~~-p~~~~-~~~l~~~~~~~N~  301 (614)
                           ++..+..+++|+.|++++ .+++.. +.... +++++.+++.+|.
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence                 122366789999999987 555432 22222 6789999999886

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.72  E-value=4.1e-18  Score=172.11  Aligned_cols=162  Identities=22%  Similarity=0.213  Sum_probs=101.9

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfGl  452 (614)
                      .++..++||||+ ++.+.......  ...+++..+..++.++                   |+||+++.++.+||+|||+
T Consensus        95 ~~~~~~lv~e~~-~~~~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  171 (318)
T 2dyl_A           95 TNTDVFIAMELM-GTCAEKLKKRM--QGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGI  171 (318)
T ss_dssp             CSSEEEEEECCC-SEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             cCCcEEEEEecc-CCcHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCC
Confidence            456789999999 44555544321  2357887777776655                   9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      ++......        ......||+.|+| |.       ...++.++|||||||+++||+||+.||......        
T Consensus       172 ~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------  235 (318)
T 2dyl_A          172 SGRLVDDK--------AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD--------  235 (318)
T ss_dssp             C----------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH--------
T ss_pred             chhccCCc--------cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc--------
Confidence            97665432        1234679999977 76       235788999999999999999999999752211        


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              .+.+...+.......+.. ...       ...+.++...|++.+|.+||++.|+++
T Consensus       236 --------~~~~~~~~~~~~~~~~~~-~~~-------~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          236 --------FEVLTKVLQEEPPLLPGH-MGF-------SGDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             --------HHHHHHHHHSCCCCCCSS-SCC-------CHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             --------HHHHHHHhccCCCCCCcc-CCC-------CHHHHHHHHHHccCChhHCcCHHHHhh
Confidence                    111222222211111110 001       122345677999999999999999986

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.72  E-value=3.7e-18  Score=175.28  Aligned_cols=174  Identities=16%  Similarity=0.174  Sum_probs=110.1

Q ss_pred             ceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccccc
Q 046036          395 FKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFL  456 (614)
Q Consensus       395 ~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~  456 (614)
                      ..++||||++ |+|.+++..     .+++..+..++.++                  |+||+++.++.+||+|||+++..
T Consensus       103 ~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  176 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHA  176 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-
T ss_pred             eEEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCC
Confidence            3589999998 699998853     38888888887777                  99999999999999999999865


Q ss_pred             CCCCCCCCCCCcCcccccccccccc-cc--c-CCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh-CCC-
Q 046036          457 PTNVTNPMKGQSNSAAVWGSIGYNM-EW--V-ARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA-LPE-  530 (614)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~-~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~-~~~-  530 (614)
                      ...          .....||+.|+| |.  . ..++.++|||||||+++||+||+.||....... .+....... .+. 
T Consensus       177 ~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~  245 (353)
T 3coi_A          177 DAE----------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGT  245 (353)
T ss_dssp             -----------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHHHHCBCCH
T ss_pred             CCC----------ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCH
Confidence            432          234678999977 86  3 578999999999999999999999997532211 111111111 010 


Q ss_pred             ----Ch-HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 ----SV-MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ----~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          .+ .......+. .....+...  +..........+.++...|++.+|++|||++|+++
T Consensus       246 ~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          246 EFVQKLNDKAAKSYIQ-SLPQTPRKD--FTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             HHHTTCSCHHHHHHHH-TSCBCSSCC--TTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHHHhhHHHHHHHH-hCcCCCCcc--HHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                00 011111111 111111100  00000111223456777999999999999999985

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.71  E-value=5.4e-18  Score=169.79  Aligned_cols=149  Identities=19%  Similarity=0.269  Sum_probs=102.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC---CCCeeecccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY---DMTAYVGDFG  451 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~---~~~~kl~DfG  451 (614)
                      +...++||||+++|+|.+++.... ...+++..+..++.++                  |+||+++.   ++.+||+|||
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg  165 (299)
T 3m2w_A           87 RKCLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFG  165 (299)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred             CceEEEEEeecCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccc
Confidence            566899999999999999998642 3468899888888877                  99999998   7899999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccccccCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~aE~~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      +++....                          ..++.++||||+||+++||+||+.||.........      ......
T Consensus       166 ~a~~~~~--------------------------~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~------~~~~~~  213 (299)
T 3m2w_A          166 FAKETTG--------------------------EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS------PGMKTR  213 (299)
T ss_dssp             TCEECTT--------------------------CGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------CCSCCS
T ss_pred             ccccccc--------------------------ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh------HHHHHH
Confidence            9975432                          23567899999999999999999999753221100      000000


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              +...   ......   .........+.++...|++.+|++|||+.|+++
T Consensus       214 --------~~~~---~~~~~~---~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          214 --------IRMG---QYEFPN---PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             --------SCTT---CCSSCH---HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             --------Hhhc---cccCCc---hhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence                    0000   000000   000011223446777999999999999999986

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=1.9e-17  Score=150.60  Aligned_cols=132  Identities=23%  Similarity=0.231  Sum_probs=64.4

Q ss_pred             CCCcEEecccccCc-ccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCC
Q 046036           35 SKLTYLSLFSNNLH-GIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNL  113 (614)
Q Consensus        35 ~~L~~L~L~~N~l~-~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  113 (614)
                      ++|++|+|++|.++ +.+|..   +..++ +|++|+|++|.+++.  ..+..+++|++|+|++|++++.+|..+..+++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~---~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL---TAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC---CGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             ccCCEEECCCCCCChhhHHHH---HHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            34555555555554 344444   33343 455555555555432  444555555555555555554444444445555


Q ss_pred             CcccccccccccceEecCCCccccccc-hhhhccCCCCeeecccccCCCCCC---CCCCCCCCCCEEEcCCCCCc
Q 046036          114 QKLNPLATSLYSFQLNLAENNLTGNIP-ESLENLTSLQILNLSCNHLGGSIP---KPSGLFSTLSSIDFAHNNFN  184 (614)
Q Consensus       114 ~~L~l~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~  184 (614)
                      ++|+            |++|++++... ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        98 ~~L~------------Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           98 THLN------------LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CEEE------------CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CEEe------------ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5444            55555553221 445555555555555555553222   24445555555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=154.68  Aligned_cols=131  Identities=20%  Similarity=0.247  Sum_probs=112.1

Q ss_pred             CeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCc
Q 046036          150 QILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGN  229 (614)
Q Consensus       150 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N  229 (614)
                      +.+++++|.++ .+|..+.  ++|++|+|++|.|+ .+|..|..+++|+.|+|++|.|++..+..|..+++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            56788888887 5666543  57889999999888 67788888999999999999998888888999999999999999


Q ss_pred             cccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCC
Q 046036          230 MFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       230 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      +|++..|..|..+++|+.|+|++|+|+...+..|..+++|+.|++++|++.+...
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            9998888889999999999999999997777789999999999999999986543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=3.4e-17  Score=166.28  Aligned_cols=104  Identities=12%  Similarity=0.011  Sum_probs=94.8

Q ss_pred             ccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCc-eeccCCccCCCCccccccCcccchH
Q 046036          145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQ-ELDFSEHMLSDEIPITLGNRSKFEH  223 (614)
Q Consensus       145 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~ls~N~l~~~~~~~~~~l~~L~~  223 (614)
                      .+++|+.|+|++|+++...+..|..+++|+.|+|++| ++...+..|.++.+|+ .+++++ .++.+.+.+|.++++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            4899999999999999777778999999999999998 8877778899999999 999998 788788899999999999


Q ss_pred             HhccCccccccCCccccCCCccceEEc
Q 046036          224 LLLGGNMFQGRIPPFFGSFKGTIDLNL  250 (614)
Q Consensus       224 L~L~~N~l~~~~p~~~~~l~~L~~L~L  250 (614)
                      |++++|.++...+.+|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999888889999999999874

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.70  E-value=5.2e-18  Score=172.21  Aligned_cols=165  Identities=21%  Similarity=0.201  Sum_probs=97.4

Q ss_pred             CCCceeEEecccCCCchhhhccCC--CCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPN--EATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~--~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~Df  450 (614)
                      .++..++||||+++ +|.+++...  .....+++..+.+++.++                   |+||+++.++.+||+||
T Consensus        92 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Df  170 (327)
T 3aln_A           92 REGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDF  170 (327)
T ss_dssp             CSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCC
T ss_pred             eCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccC
Confidence            35678999999996 888777521  013357888777776655                   99999999999999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHH
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNF  523 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~  523 (614)
                      |+++......        ......||+.|+| |.      ...++.++|||||||+++||+||+.||.........+   
T Consensus       171 g~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~---  239 (327)
T 3aln_A          171 GISGQLVDSI--------AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQL---  239 (327)
T ss_dssp             SSSCC--------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC----------
T ss_pred             CCceeccccc--------ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHH---
Confidence            9998765432        1233579999977 76      2357899999999999999999999997532110000   


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCC-CchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAE-DEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                   ...+.......+. ...       .....+.+++..|++.+|++|||+.|+++
T Consensus       240 -------------~~~~~~~~~~~~~~~~~-------~~~~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          240 -------------TQVVKGDPPQLSNSEER-------EFSPSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             -------------CCCCCSCCCCCCCCSSC-------CCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -------------HHHhcCCCCCCCCcccc-------cCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence                         0000000000000 000       01123456777999999999999999986

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=6.3e-17  Score=147.16  Aligned_cols=132  Identities=26%  Similarity=0.233  Sum_probs=109.8

Q ss_pred             cccEEEccCCccc-ccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchh
Q 046036           64 KLRILDAGGNQFA-GDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPES  142 (614)
Q Consensus        64 ~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~  142 (614)
                      +|++|+|++|.++ +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|+            |++|++++.+|..
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~------------Ls~N~l~~~~~~~   90 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLE------------LSENRIFGGLDML   90 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEE------------EESCCCCSCCCHH
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEE------------CcCCcCchHHHHH
Confidence            7899999999997 67888888999999999999999865  6788888888777            9999999878888


Q ss_pred             hhccCCCCeeecccccCCCCC-CCCCCCCCCCCEEEcCCCCCccCCc---ccccCCCCCceeccCCccCCC
Q 046036          143 LENLTSLQILNLSCNHLGGSI-PKPSGLFSTLSSIDFAHNNFNGSLP---LEVGSLSNTQELDFSEHMLSD  209 (614)
Q Consensus       143 ~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~ls~N~l~~  209 (614)
                      +..+++|++|+|++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+..
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            888999999999999998532 2667888888888888888885554   467888888888888887763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=3.5e-17  Score=145.69  Aligned_cols=128  Identities=24%  Similarity=0.296  Sum_probs=91.6

Q ss_pred             CCCCCeeeecCCccc-ccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCC
Q 046036           10 LFRLQNLNFGNSTVQ-GEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN   88 (614)
Q Consensus        10 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~   88 (614)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..   +.+++ +|++|+|++|.+++.+|..+..+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~---~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN---LPKLN-KLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT---CCCCT-TCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh---hhcCC-CCCEEECCCCcccchHHHHhhhCCC
Confidence            467788888888877 67777777778888888888877754  33   56666 7777888888777656666666777


Q ss_pred             CCEEeccCCcCccc-CCccccCCCCCCcccccccccccceEecCCCccccccc---hhhhccCCCCeeecc
Q 046036           89 LIQLGLDRNCLAGS-IPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP---ESLENLTSLQILNLS  155 (614)
Q Consensus        89 L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~  155 (614)
                      |++|++++|.+++. .+..++.+++|++|+            +++|.+++..+   ..+..+++|++|+++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~------------l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLD------------LFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEE------------CTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEe------------CcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777777777753 336677777777666            77777776555   467777777777765

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.68  E-value=5.5e-18  Score=177.59  Aligned_cols=157  Identities=12%  Similarity=0.119  Sum_probs=109.2

Q ss_pred             eeEEecccCCCchhhhccC----CCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          396 KALAFEFMPNGSLESWLHP----NEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~----~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .+++|+++ .|+|.+++..    ......++|..+..|+.++                  |+|||++.++.+||+|||++
T Consensus       180 ~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~~~~~kL~DFG~a  258 (413)
T 3dzo_A          180 RFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL  258 (413)
T ss_dssp             EEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGC
T ss_pred             eEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEecCCeEEEEeccce
Confidence            56777765 5799998841    1124468888888887777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-ccc----------C--CCCccCceeehhHHHHHHHhCCCCCCcccccCchH
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWV----------A--RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSL  520 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~~----------~--~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l  520 (614)
                      +.....          ....+| ++|+| |+.          .  .++.++|||||||++|||+||+.||......... 
T Consensus       259 ~~~~~~----------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~-  326 (413)
T 3dzo_A          259 VRDGAS----------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGS-  326 (413)
T ss_dssp             EETTEE----------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCS-
T ss_pred             eecCCc----------cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhH-
Confidence            865432          334677 99977 862          1  3677999999999999999999999754321110 


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH--HHHhHHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME--MNVIKEV  596 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~--L~~i~~~  596 (614)
                          .            ..+... .       ..       ...+.+++..|++.+|++||++.|+++.  ++++++.
T Consensus       327 ----~------------~~~~~~-~-------~~-------~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~~~~  373 (413)
T 3dzo_A          327 ----E------------WIFRSC-K-------NI-------PQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTE  373 (413)
T ss_dssp             ----G------------GGGSSC-C-------CC-------CHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHHHH
T ss_pred             ----H------------HHHhhc-c-------cC-------CHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHHHHH
Confidence                0            001110 0       00       1234456679999999999999988753  4444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.68  E-value=3.2e-17  Score=182.95  Aligned_cols=149  Identities=20%  Similarity=0.330  Sum_probs=108.6

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccC
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      .|+|||||++|+|.+++..     .++|..+..|+.++                  |+|||++.+ .+||+|||+++...
T Consensus       159 ~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~  232 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRIN  232 (681)
T ss_dssp             EEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETT
T ss_pred             eEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhcc
Confidence            6999999999999998753     58999999998888                  999999986 89999999998764


Q ss_pred             CCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCChHHH
Q 046036          458 TNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMEL  535 (614)
Q Consensus       458 ~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~~~~  535 (614)
                      ..           ....||++|+| |+ ....+.++|||||||+++||++|..|+........          +...   
T Consensus       233 ~~-----------~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~----------~~~~---  288 (681)
T 2pzi_A          233 SF-----------GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDGL----------PEDD---  288 (681)
T ss_dssp             CC-----------SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEECSSC----------CTTC---
T ss_pred             cC-----------CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCcccccccc----------cccc---
Confidence            32           23679999977 87 44558999999999999999999988764321110          0000   


Q ss_pred             HHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCC-HHHHHHHHHHhHH
Q 046036          536 VYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMG-VREMVMEMNVIKE  595 (614)
Q Consensus       536 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPs-m~ev~~~L~~i~~  595 (614)
                                      +     .......+.++...|++.+|++||+ +.++...+..+..
T Consensus       289 ----------------~-----~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~  328 (681)
T 2pzi_A          289 ----------------P-----VLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR  328 (681)
T ss_dssp             ----------------H-----HHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred             ----------------c-----ccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence                            0     0011123456778999999999995 5666667766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=1.3e-15  Score=158.07  Aligned_cols=246  Identities=10%  Similarity=0.053  Sum_probs=189.3

Q ss_pred             CCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCC
Q 046036           10 LFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL   89 (614)
Q Consensus        10 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L   89 (614)
                      +..++.+.+.+ .++.+...+|.++ +|+.+.|.+| ++.+...+   |.+.  +|+.+.|.. .++...+.+|.++.+|
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a---F~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMA---FFNS--TVQEIVFPS-TLEQLKEDIFYYCYNL  182 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTT---TTTC--CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHh---cCCC--CceEEEeCC-CccEehHHHhhCcccC
Confidence            46777887764 5666777888885 7999998876 77666666   5553  788999975 6766667789999999


Q ss_pred             CEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCC
Q 046036           90 IQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGL  169 (614)
Q Consensus        90 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  169 (614)
                      +.++|++|.++.+....|. ..+|+.+.            |.. .++.+....|.++++|+.+++..| ++......|..
T Consensus       183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~------------lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~  247 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFV-YAGIEEVL------------LPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE  247 (401)
T ss_dssp             CEEECTTSCCSEECTTTTT-TCCCSEEE------------CCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT
T ss_pred             CeeecCCCcceEechhhEe-ecccCEEE------------eCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc
Confidence            9999999999866666666 57777776            764 477677778899999999999875 55455556666


Q ss_pred             CCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCC-----CCccccccCcccchHHhccCccccccCCccccCCCc
Q 046036          170 FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS-----DEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKG  244 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  244 (614)
                       .+|+.+.+ .+.++......|.++++|+.+++.+|.+.     .+.+.+|.++++|+.+.|.+ .++.+...+|.++++
T Consensus       248 -~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~  324 (401)
T 4fdw_A          248 -SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK  324 (401)
T ss_dssp             -CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS
T ss_pred             -CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC
Confidence             78999998 45566566778888999999999887765     45667888999999999984 477677778889999


Q ss_pred             cceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCC
Q 046036          245 TIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       245 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      |+.++|..| ++.....+|.++ +|+.+++++|.+....+
T Consensus       325 L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          325 VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred             ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence            999999655 776777888888 99999999987765433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=7.8e-17  Score=143.40  Aligned_cols=126  Identities=21%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             cccEEEccCCccc-ccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchh
Q 046036           64 KLRILDAGGNQFA-GDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPES  142 (614)
Q Consensus        64 ~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~  142 (614)
                      +|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..++.+++|++|+            |++|.+++.+|..
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~------------Ls~n~i~~~~~~~   83 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLE------------LSDNRVSGGLEVL   83 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEE------------CCSSCCCSCTHHH
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEE------------CCCCcccchHHHH
Confidence            6778888888887 67777777888888888888888755  5677777777666            8888888767777


Q ss_pred             hhccCCCCeeecccccCCCC-CCCCCCCCCCCCEEEcCCCCCccCCc---ccccCCCCCceeccC
Q 046036          143 LENLTSLQILNLSCNHLGGS-IPKPSGLFSTLSSIDFAHNNFNGSLP---LEVGSLSNTQELDFS  203 (614)
Q Consensus       143 ~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~ls  203 (614)
                      +..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77788888888888888753 23667778888888888888876555   467778888888775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3.8e-16  Score=145.28  Aligned_cols=127  Identities=22%  Similarity=0.311  Sum_probs=65.3

Q ss_pred             cEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhc
Q 046036           66 RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN  145 (614)
Q Consensus        66 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~  145 (614)
                      +.+++++|.++ .+|..+.  ++|++|+|++|+++ .+|..|.++++|+.|+            |++|.|++..+..|.+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~------------Ls~N~i~~i~~~~f~~   76 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLID------------LSNNRISTLSNQSFSN   76 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEE------------CCSSCCCCCCTTTTTT
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEE------------CCCCcCCEeCHhHccC
Confidence            34555555554 3444332  24555555555554 4444555555555444            5555555444455555


Q ss_pred             cCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCC
Q 046036          146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS  208 (614)
Q Consensus       146 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  208 (614)
                      +++|++|+|++|+|++..|..+..+++|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus        77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            555555555555555444445555555555555555555444444555555555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=2.5e-16  Score=144.57  Aligned_cols=134  Identities=17%  Similarity=0.190  Sum_probs=98.6

Q ss_pred             CCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccC
Q 046036          149 LQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG  228 (614)
Q Consensus       149 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~  228 (614)
                      .+.+++++|+++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            355666666666 344332  25677777777777755555567777777777777777766666677777788888888


Q ss_pred             ccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC
Q 046036          229 NMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS  285 (614)
Q Consensus       229 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~  285 (614)
                      |.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            888766666778888899999999999877666778889999999999998877653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=8.2e-16  Score=141.07  Aligned_cols=129  Identities=21%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             cEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhc
Q 046036           66 RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN  145 (614)
Q Consensus        66 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~  145 (614)
                      +.+++++|+++ .+|..+.  ++|++|++++|++++..+..|+.+++|++|+            |++|++++..+..|..
T Consensus        10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------l~~n~l~~~~~~~~~~   74 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLS------------LSQNQIQSLPDGVFDK   74 (177)
T ss_dssp             TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEE------------CCSSCCCCCCTTTTTT
T ss_pred             CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEE------------CCCCcceEeChhHccC
Confidence            34455555544 3333222  3455555555555444444444444444444            5555555444444555


Q ss_pred             cCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCC
Q 046036          146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD  209 (614)
Q Consensus       146 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  209 (614)
                      +++|++|+|++|++++..+..+..+++|++|++++|.|++..+..+..+++|++|++++|.+++
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            5555555555555554444444555555555555555554433344555555555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=1.7e-14  Score=149.71  Aligned_cols=241  Identities=12%  Similarity=0.103  Sum_probs=128.2

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCE
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ   91 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~   91 (614)
                      +|+.+.|..+ ++.+...+|.++ +|+.+.|.. .++.+.+.+   |.++. +|+.++|++|+++......|. ..+|+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a---F~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~  207 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI---FYYCY-NLKKADLSKTKITKLPASTFV-YAGIEE  207 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST---TTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSE
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH---hhCcc-cCCeeecCCCcceEechhhEe-ecccCE
Confidence            4666665544 554555555553 466666654 444344444   45554 566666666666533333343 456666


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCC
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS  171 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  171 (614)
                      +.|..+ ++.+....|.++++|+.++            +..| ++.+...+|.+ .+|+.+.+ .|.++...+..|..++
T Consensus       208 l~lp~~-l~~I~~~aF~~~~~L~~l~------------l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~  271 (401)
T 4fdw_A          208 VLLPVT-LKEIGSQAFLKTSQLKTIE------------IPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCP  271 (401)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCEE------------CCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCT
T ss_pred             EEeCCc-hheehhhHhhCCCCCCEEe------------cCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCC
Confidence            666533 5545555566666666555            4442 34344445555 55666666 3334434455555666


Q ss_pred             CCCEEEcCCCCCc-----cCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccc
Q 046036          172 TLSSIDFAHNNFN-----GSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI  246 (614)
Q Consensus       172 ~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  246 (614)
                      +|+.+++.+|.+.     ...+..|.++++|+.++|. +.++.+...+|.++.+|+.+.|..| ++.+-..+|.++ +|+
T Consensus       272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~  348 (401)
T 4fdw_A          272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK  348 (401)
T ss_dssp             TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred             CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence            6666666555543     2334455566666666665 3355455555666666666666443 443445556665 666


Q ss_pred             eEEccCCcCcccCCcccCCCC-CCCEEECcCCcC
Q 046036          247 DLNLSHNNLSGTIPKELETLP-FLENLNLSFNNF  279 (614)
Q Consensus       247 ~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ls~N~l  279 (614)
                      .+++++|.+....+..|..++ +++.|++..+.+
T Consensus       349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            666666655554455555553 455555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=1e-15  Score=140.22  Aligned_cols=133  Identities=18%  Similarity=0.163  Sum_probs=74.5

Q ss_pred             CCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCC
Q 046036           31 LSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKL  110 (614)
Q Consensus        31 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  110 (614)
                      +.++++|++|++++|+++. +|.    +..+.++|++|+|++|.+++.  ..+..+++|++|+|++|.+++..+..|..+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             cCCcCCceEEEeeCCCCch-hHH----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence            4455566666666666652 232    222222566666666666543  455566666666666666664433444556


Q ss_pred             CCCCcccccccccccceEecCCCccccccch--hhhccCCCCeeecccccCCCCCCCC----CCCCCCCCEEEcCCCCCc
Q 046036          111 QNLQKLNPLATSLYSFQLNLAENNLTGNIPE--SLENLTSLQILNLSCNHLGGSIPKP----SGLFSTLSSIDFAHNNFN  184 (614)
Q Consensus       111 ~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~  184 (614)
                      ++|++|+            |++|+|+ .+|.  .+..+++|++|++++|.++ .+|..    +..+++|+.|++++|.+.
T Consensus        88 ~~L~~L~------------L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELI------------LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEE------------CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEE------------CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6666555            6666664 3333  5666666666666666665 34442    556666666666666554

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.59  E-value=4.4e-16  Score=154.57  Aligned_cols=148  Identities=11%  Similarity=0.031  Sum_probs=98.3

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.+++...     ....+..+|+.++                  |+|||++.++.+||+++|..
T Consensus       102 ~~~~~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~~  176 (286)
T 3uqc_A          102 TRAGGLVVAEWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATM  176 (286)
T ss_dssp             ETTEEEEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCCC
T ss_pred             ECCcEEEEEEecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecccc
Confidence            356789999999999999999642     2333456666665                  99999999999999855432


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccccccCCCCccCceeehhHHHHHHHhCCCCCCcccccCch--HHHHHHhhCCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLS--LHNFCEMALPES  531 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aE~~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~--l~~~~~~~~~~~  531 (614)
                                                     ..++.++|||||||++|||+||+.||.........  .........+  
T Consensus       177 -------------------------------~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~--  223 (286)
T 3uqc_A          177 -------------------------------PDANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPI--  223 (286)
T ss_dssp             -------------------------------TTCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBC--
T ss_pred             -------------------------------CCCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCC--
Confidence                                           13578899999999999999999999864332110  0000000000  


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                      ...    .+..                 +....+.++..+|++.||++| |+.|+++.|+++......
T Consensus       224 ~~~----~~~~-----------------~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~~  269 (286)
T 3uqc_A          224 EPA----DIDR-----------------DIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVADR  269 (286)
T ss_dssp             CHH----HHCT-----------------TSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC----
T ss_pred             Chh----hccc-----------------CCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCCc
Confidence            000    0000                 111234467779999999999 999999999988765443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=1.7e-15  Score=138.86  Aligned_cols=132  Identities=19%  Similarity=0.189  Sum_probs=105.1

Q ss_pred             hccccccccEEEccCCcccccCCCCCcCCC-CCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccc
Q 046036           58 FTNLSTKLRILDAGGNQFAGDIPAGIPKYF-NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLT  136 (614)
Q Consensus        58 ~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~  136 (614)
                      +.+.. +|++|++++|+++ .+|. +..+. +|++|+|++|.+++.  ..|+.+++|++|+            |++|+|+
T Consensus        15 ~~~~~-~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~------------Ls~N~l~   77 (176)
T 1a9n_A           15 YTNAV-RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL------------VNNNRIC   77 (176)
T ss_dssp             EECTT-SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEE------------CCSSCCC
T ss_pred             cCCcC-CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEE------------CCCCccc
Confidence            45555 8999999999998 4554 55554 999999999999865  5788888888777            9999999


Q ss_pred             cccchhhhccCCCCeeecccccCCCCCCC--CCCCCCCCCEEEcCCCCCccCCccc----ccCCCCCceeccCCccCC
Q 046036          137 GNIPESLENLTSLQILNLSCNHLGGSIPK--PSGLFSTLSSIDFAHNNFNGSLPLE----VGSLSNTQELDFSEHMLS  208 (614)
Q Consensus       137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~ls~N~l~  208 (614)
                      +..+..|..+++|++|+|++|+++ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.||++.|.+.
T Consensus        78 ~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           78 RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            766666789999999999999986 5555  6778888999999999887 45553    778888888888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=7.1e-18  Score=157.93  Aligned_cols=152  Identities=22%  Similarity=0.284  Sum_probs=81.9

Q ss_pred             CCCcEEecccccCcccCCc------ChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCcccc
Q 046036           35 SKLTYLSLFSNNLHGIIPP------SLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIG  108 (614)
Q Consensus        35 ~~L~~L~L~~N~l~~~~p~------~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  108 (614)
                      ..++.++++.|.+++.+|.      .   +..++ +|++|+|++|.+++ +| .+..+++|++|+|++|.++ .+|..+.
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~---~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDAT---LSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHH---HHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHH---HhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            3444444444444444433      3   33444 55555555555543 34 4555555555555555554 3444444


Q ss_pred             CCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCC-CCCCCCCCCCEEEcCCCCCccCC
Q 046036          109 KLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIP-KPSGLFSTLSSIDFAHNNFNGSL  187 (614)
Q Consensus       109 ~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~  187 (614)
                      .+++|++|+            |++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|++++|.+++.+
T Consensus        91 ~~~~L~~L~------------L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           91 VADTLEELW------------ISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHHHCSEEE------------EEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             cCCcCCEEE------------CcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            445555444            55555553 23 46666666666666666653221 24556666667777777666554


Q ss_pred             cc----------cccCCCCCceeccCCccCCC
Q 046036          188 PL----------EVGSLSNTQELDFSEHMLSD  209 (614)
Q Consensus       188 ~~----------~~~~l~~L~~L~ls~N~l~~  209 (614)
                      |.          .+..+++|+.||  +|.++.
T Consensus       157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          157 KENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            43          267778888776  666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.57  E-value=1.3e-17  Score=156.06  Aligned_cols=139  Identities=19%  Similarity=0.226  Sum_probs=80.9

Q ss_pred             cCCCccccccch------hhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccC
Q 046036          130 LAENNLTGNIPE------SLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFS  203 (614)
Q Consensus       130 L~~N~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  203 (614)
                      ++.|.+++..|.      .|..+++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECc
Confidence            444444444443      66667777777777777664 45 5566666666666666666 455555555666666666


Q ss_pred             CccCCCCccccccCcccchHHhccCccccccCC-ccccCCCccceEEccCCcCcccCCcc----------cCCCCCCCEE
Q 046036          204 EHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIP-PFFGSFKGTIDLNLSHNNLSGTIPKE----------LETLPFLENL  272 (614)
Q Consensus       204 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L  272 (614)
                      +|.+++. | .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|..          +..+++|+.|
T Consensus       102 ~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  179 (198)
T 1ds9_A          102 YNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             EEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred             CCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence            6666642 2 45555666666666666653221 34555666666666666665444331          4455556655


Q ss_pred             E
Q 046036          273 N  273 (614)
Q Consensus       273 ~  273 (614)
                      |
T Consensus       180 d  180 (198)
T 1ds9_A          180 D  180 (198)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=6.7e-14  Score=127.20  Aligned_cols=106  Identities=26%  Similarity=0.314  Sum_probs=67.4

Q ss_pred             ccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhh
Q 046036           65 LRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE  144 (614)
Q Consensus        65 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~  144 (614)
                      .+.|++++|.++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|+            |++|+|++..+..|.
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~------------Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLD------------LDNNQLTVLPAGVFD   75 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEE------------CCSSCCCCCCTTTTT
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEE------------CCCCCcCccChhhcc
Confidence            456677777766 4555443  5666677777766666666666666666555            666666655555566


Q ss_pred             ccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCcc
Q 046036          145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG  185 (614)
Q Consensus       145 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  185 (614)
                      .+++|++|+|++|+|++..+..+..+++|++|+|++|.++.
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            66666666676666665555556666666666666666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=4e-14  Score=128.66  Aligned_cols=90  Identities=18%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             CCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEEC
Q 046036          195 SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNL  274 (614)
Q Consensus       195 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  274 (614)
                      ++|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            44445555555555444555555555555555555555555555667777777777777777666666777788888888


Q ss_pred             cCCcCcccCC
Q 046036          275 SFNNFEGQLP  284 (614)
Q Consensus       275 s~N~l~~~~p  284 (614)
                      ++|++++..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            8887776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.5e-13  Score=125.38  Aligned_cols=104  Identities=28%  Similarity=0.367  Sum_probs=59.6

Q ss_pred             cEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhc
Q 046036           66 RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLEN  145 (614)
Q Consensus        66 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~  145 (614)
                      +.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|+            |++|+|++..+..|..
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~------------Ls~N~l~~i~~~~~~~   79 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLY------------FNSNKLTAIPTGVFDK   79 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEE------------CCSSCCCCCCTTTTTT
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEE------------CCCCCCCccChhHhCC
Confidence            45666666664 4555443  4666666666666655555555555555555            6666665544444556


Q ss_pred             cCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 046036          146 LTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFN  184 (614)
Q Consensus       146 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  184 (614)
                      +++|++|+|++|+|++..+..+..+++|+.|+|++|.+.
T Consensus        80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            666666666666666444444555666666666666555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=9.1e-14  Score=126.75  Aligned_cols=90  Identities=16%  Similarity=0.239  Sum_probs=53.9

Q ss_pred             CCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEEC
Q 046036          195 SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNL  274 (614)
Q Consensus       195 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  274 (614)
                      ++|+.|+|++|.|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            34444444444444444444445555555555555555444445566777777777777777655556777777777777


Q ss_pred             cCCcCcccCC
Q 046036          275 SFNNFEGQLP  284 (614)
Q Consensus       275 s~N~l~~~~p  284 (614)
                      ++|++.+..+
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            7777776544

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.46  E-value=3e-14  Score=144.91  Aligned_cols=104  Identities=16%  Similarity=0.004  Sum_probs=84.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCC---------
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDM---------  443 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~---------  443 (614)
                      .++..++|||||++|++.+.+..    ..+++.....|+.++                   |+|||++.++         
T Consensus       133 ~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~  208 (336)
T 2vuw_A          133 KDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLN  208 (336)
T ss_dssp             CTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEET
T ss_pred             ccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeecc
Confidence            35678999999999987777753    247787777776666                   9999999887         


Q ss_pred             -----------CeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHH-HHHHHhCCCC
Q 046036          444 -----------TAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGIL-LLEIMTGKRP  509 (614)
Q Consensus       444 -----------~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvv-llElltG~~p  509 (614)
                                 .+||+|||+|+.....            ..+||+.|+| |. .+..+.++||||+|++ ..++++|..|
T Consensus       209 ~~~~~~~~~~~~vkL~DFG~a~~~~~~------------~~~gt~~y~aPE~~~g~~~~~~Diwsl~~~~~~~~~~g~~p  276 (336)
T 2vuw_A          209 GKSSTIPSCGLQVSIIDYTLSRLERDG------------IVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHP  276 (336)
T ss_dssp             TEEEEEECTTEEEEECCCTTCBEEETT------------EEECCCCTTCSGGGCCCSSHHHHHHHHHHHHHTTCTTSCCT
T ss_pred             CccccccCCCceEEEeeccccEecCCC------------cEEEeecccChhhhcCCCccceehhhhhCCCCcccccccCC
Confidence                       8999999999876532            3589999977 87 4555899999998777 7778899999


Q ss_pred             CC
Q 046036          510 TD  511 (614)
Q Consensus       510 ~~  511 (614)
                      |.
T Consensus       277 ~~  278 (336)
T 2vuw_A          277 YS  278 (336)
T ss_dssp             HH
T ss_pred             Cc
Confidence            85

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.43  E-value=1.5e-14  Score=157.06  Aligned_cols=107  Identities=21%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..||||||++||+|.++|...+   +++..+   |+.+|                  |+|||+++++.+||+|||
T Consensus       311 ~ed~~~~yLVMEyv~G~~L~d~i~~~~---~l~~~~---I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFG  384 (569)
T 4azs_A          311 GENAQSGWLVMEKLPGRLLSDMLAAGE---EIDREK---ILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFG  384 (569)
T ss_dssp             EECSSEEEEEEECCCSEEHHHHHHTTC---CCCHHH---HHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCT
T ss_pred             EEECCEEEEEEecCCCCcHHHHHHhCC---CCCHHH---HHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecc
Confidence            345678999999999999999998643   455542   44454                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRP  509 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p  509 (614)
                      +|+......       ......+||++||| |. .+.+..++|+||.|++++++.++..|
T Consensus       385 lAr~~~~~~-------~~~~t~vGTp~YmAPE~l~g~~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          385 SIVTTPQDC-------SWPTNLVQSFFVFVNELFAENKSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             TEESCC----------CCSHHHHHHHHHHHHHHC-----------------CCCCTTHHH
T ss_pred             cCeeCCCCC-------ccccCceechhhccHHHhCCCCCCcccccccccchhhhccccch
Confidence            999776543       23456889999977 87 67788899999999998888776554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.40  E-value=3.1e-15  Score=153.74  Aligned_cols=169  Identities=20%  Similarity=0.180  Sum_probs=80.5

Q ss_pred             CCCcEEecccccCcccCCcChhhh-ccccccccEEEccCCcccccCCCCC-cCCCCCCEEeccCCcCcccCCcccc----
Q 046036           35 SKLTYLSLFSNNLHGIIPPSLDSF-TNLSTKLRILDAGGNQFAGDIPAGI-PKYFNLIQLGLDRNCLAGSIPFSIG----  108 (614)
Q Consensus        35 ~~L~~L~L~~N~l~~~~p~~~~~~-~~l~~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~----  108 (614)
                      ++|++|+|++|.++......+... .....+|++|+|++|.++......+ ..+.+|++|+|++|.++......+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            345555555555553322221111 1010155555555555543222222 1234555666666655433322221    


Q ss_pred             -CCCCCCcccccccccccceEecCCCccccc----cchhhhccCCCCeeecccccCCCC----CCCCCCCCCCCCEEEcC
Q 046036          109 -KLQNLQKLNPLATSLYSFQLNLAENNLTGN----IPESLENLTSLQILNLSCNHLGGS----IPKPSGLFSTLSSIDFA  179 (614)
Q Consensus       109 -~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls  179 (614)
                       ..++|++|+            |++|.|+..    ++..+..+++|++|+|++|.|++.    ++..+...++|++|+|+
T Consensus       152 ~~~~~L~~L~------------Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          152 HDQCQITTLR------------LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA  219 (372)
T ss_dssp             STTCCCCEEE------------CCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred             hcCCccceee------------CCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence             233444444            666665432    233345566666666666666521    12334445566666666


Q ss_pred             CCCCccC----CcccccCCCCCceeccCCccCCCCccccc
Q 046036          180 HNNFNGS----LPLEVGSLSNTQELDFSEHMLSDEIPITL  215 (614)
Q Consensus       180 ~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~~~~~  215 (614)
                      +|.|+..    ++..+...++|++|+|++|.|+......+
T Consensus       220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            6666532    22333445667777777777665433333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.35  E-value=2e-11  Score=126.85  Aligned_cols=277  Identities=10%  Similarity=0.006  Sum_probs=161.7

Q ss_pred             cccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCC------------
Q 046036            6 EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGN------------   73 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N------------   73 (614)
                      +|.++.+|+.+.|.. .++.+...+|.++++|+.++|.++ ++.+....   |.++. +|+.+.+..+            
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a---F~~c~-~L~~i~~p~~l~~i~~~aF~~~  139 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCT---FSGCY-ALKSILLPLMLKSIGVEAFKGC  139 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTT---TTTCT-TCCCCCCCTTCCEECTTTTTTC
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchh---hcccc-cchhhcccCceeeecceeeecc
Confidence            467788999999974 477777888999999999999765 55444444   44443 4444443322            


Q ss_pred             ---------cccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc------------ccceEecCC
Q 046036           74 ---------QFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL------------YSFQLNLAE  132 (614)
Q Consensus        74 ---------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~------------~l~~L~L~~  132 (614)
                               .+......+|.++.+|+.+.+.++. .......|.++.+|+.+++ |..+            .++.+.+..
T Consensus       140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l-~~~~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKL-PRNLKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCC-CTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred             cccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEc-CCCceEeCchhhccccccceeecCC
Confidence                     1111233567788888888887654 4366677888888888873 1111            222333332


Q ss_pred             CccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCcc
Q 046036          133 NNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIP  212 (614)
Q Consensus       133 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~  212 (614)
                      +...  +...+....+|+.+.+..+ ++......+.....|+.+.+..+... .....|..+..++.+.+..+.+.   .
T Consensus       218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~  290 (394)
T 4fs7_A          218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---E  290 (394)
T ss_dssp             TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred             CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---c
Confidence            2211  1222223344555544322 22233445666777787777766543 44556666777776666555432   3


Q ss_pred             ccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCC-CccccCC
Q 046036          213 ITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP-SMSVFTN  291 (614)
Q Consensus       213 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~~~  291 (614)
                      ..|..+.+|+.+.+..+ ++.+-..+|.++.+|+.++|.++ ++.....+|.++.+|+.+++..| ++..-. .+....+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            45666667777766554 44445556777777777777543 55455666777777777777655 332211 2333455


Q ss_pred             CceEEEecC
Q 046036          292 TSVISIVGN  300 (614)
Q Consensus       292 l~~~~~~~N  300 (614)
                      ++.+.+..+
T Consensus       368 L~~i~lp~~  376 (394)
T 4fs7_A          368 LKKVELPKR  376 (394)
T ss_dssp             CCEEEEEGG
T ss_pred             CCEEEECCC
Confidence            666666544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=8.3e-15  Score=150.54  Aligned_cols=79  Identities=18%  Similarity=0.157  Sum_probs=36.5

Q ss_pred             cCCCccccccchhh-hccCCCCeeecccccCCCCCCCCC-----CCCCCCCEEEcCCCCCccC----CcccccCCCCCce
Q 046036          130 LAENNLTGNIPESL-ENLTSLQILNLSCNHLGGSIPKPS-----GLFSTLSSIDFAHNNFNGS----LPLEVGSLSNTQE  199 (614)
Q Consensus       130 L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~  199 (614)
                      |++|.|+......+ ..+++|++|+|++|.|+......+     ...++|++|+|++|.|+..    ++..+..+++|++
T Consensus       108 Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~  187 (372)
T 3un9_A          108 LASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH  187 (372)
T ss_dssp             CTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCE
T ss_pred             ecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCE
Confidence            55555543222222 234455555555555542211111     1234566666666665431    2223345556666


Q ss_pred             eccCCccCC
Q 046036          200 LDFSEHMLS  208 (614)
Q Consensus       200 L~ls~N~l~  208 (614)
                      |+|++|.++
T Consensus       188 L~Ls~N~l~  196 (372)
T 3un9_A          188 LSLLHTGLG  196 (372)
T ss_dssp             EECTTSSCH
T ss_pred             EeCCCCCCC
Confidence            666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=3.8e-12  Score=129.97  Aligned_cols=104  Identities=21%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             EEEccCC-cccccCCCCCcCCCCCCEEeccC-CcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhh
Q 046036           67 ILDAGGN-QFAGDIPAGIPKYFNLIQLGLDR-NCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE  144 (614)
Q Consensus        67 ~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~  144 (614)
                      .++++++ +|+ .+|. +..+++|++|+|++ |.|++..+..|++|++|+.|+            |++|+|++..|..|.
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~------------l~~N~l~~~~~~~~~   77 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT------------IVKSGLRFVAPDAFH   77 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEE------------CCSSCCCEECTTGGG
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEE------------CCCCccceeCHHHhc
Confidence            4688887 787 5777 88888888899986 888877778888888888877            888888888888888


Q ss_pred             ccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCcc
Q 046036          145 NLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG  185 (614)
Q Consensus       145 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  185 (614)
                      +|++|++|+|++|+|++..+..+..++ |+.|+|.+|.|..
T Consensus        78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            888999999999988865555555555 8888888888874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=5e-12  Score=129.08  Aligned_cols=106  Identities=22%  Similarity=0.184  Sum_probs=87.4

Q ss_pred             CeeeecCC-cccccCCcCCCCCCCCcEEeccc-ccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCE
Q 046036           14 QNLNFGNS-TVQGEIPSHLSPTSKLTYLSLFS-NNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ   91 (614)
Q Consensus        14 ~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~   91 (614)
                      ..++++++ +|+ .+|. |..+++|++|+|++ |+|++..|..   |.+++ +|++|+|++|+|++..|..|.++++|++
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRD---LRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGG---SCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhH---hcccc-CCCEEECCCCccceeCHHHhcCCcCCCE
Confidence            45788887 888 5777 99999999999996 9999777777   77787 8999999999999888888999999999


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccc
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGN  138 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~  138 (614)
                      |+|++|+|++..+..|..+. |+.|+            |.+|.+...
T Consensus        85 L~l~~N~l~~~~~~~~~~~~-L~~l~------------l~~N~~~c~  118 (347)
T 2ifg_A           85 LNLSFNALESLSWKTVQGLS-LQELV------------LSGNPLHCS  118 (347)
T ss_dssp             EECCSSCCSCCCSTTTCSCC-CCEEE------------CCSSCCCCC
T ss_pred             EeCCCCccceeCHHHcccCC-ceEEE------------eeCCCccCC
Confidence            99999999876666666655 77666            888888743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.22  E-value=3.6e-10  Score=117.37  Aligned_cols=260  Identities=9%  Similarity=0.043  Sum_probs=141.8

Q ss_pred             cccCCC-CCCeeeecCCcccccCCcCCCCCCCCcEEeccccc---CcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            6 EIGNLF-RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNN---LHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         6 ~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      .|.+.. .|+.+.|..+ ++.+-..+|.++++|+.+.+..|.   ++.+...+   |.++. +|+.+.+..+ ++.....
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a---F~~c~-~L~~i~~~~~-~~~I~~~  131 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA---FMFCS-ELTDIPILDS-VTEIDSE  131 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT---TTTCT-TCCBCGGGTT-CSEECTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh---chhcc-cceeeccCCc-cceehhh
Confidence            355554 5899999754 777888899999999999998774   55444555   66665 7777777654 5545566


Q ss_pred             CCcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc-----------ccceEecCCCccccccchhhhccCCCC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL-----------YSFQLNLAENNLTGNIPESLENLTSLQ  150 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~-----------~l~~L~L~~N~l~~~~~~~~~~l~~L~  150 (614)
                      .|..+.+|+.+.+..+ +.......|..+.+|+.+.+ +..+           .++.+.+..+-.. .....|..+.+|+
T Consensus       132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~-~~~~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l~  208 (394)
T 4gt6_A          132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTL-PDSVTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFALS  208 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEC-CTTCCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred             hhhhhcccccccccce-eeeecccceecccccccccc-cceeeEeccccccccceeEEEECCcccc-cccchhhhccccc
Confidence            7888888888888654 44466667777888877763 1111           3334444333221 3334455555555


Q ss_pred             eeecccccCC------------------------------------CCCCCCCCCCCCCCEEEcCCCCCccCCcccccCC
Q 046036          151 ILNLSCNHLG------------------------------------GSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSL  194 (614)
Q Consensus       151 ~L~L~~N~l~------------------------------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  194 (614)
                      ......+...                                    ..-...|..+..|+.+.+..+..+ .....|.++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c  287 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNC  287 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTC
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccc
Confidence            5544332221                                    011123344444555555443322 333344455


Q ss_pred             CCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEEC
Q 046036          195 SNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNL  274 (614)
Q Consensus       195 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  274 (614)
                      .+|+.+.+. +.++.+...+|.++.+|+.+.|..+ ++.+-..+|.++.+|+.+.+..+ ++.....+|.++++|+.+++
T Consensus       288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            555555553 2333333445555555555555433 33333444555555555555432 43333445555555555555


Q ss_pred             cCCc
Q 046036          275 SFNN  278 (614)
Q Consensus       275 s~N~  278 (614)
                      .+|.
T Consensus       365 ~~~~  368 (394)
T 4gt6_A          365 SGSR  368 (394)
T ss_dssp             SSCH
T ss_pred             CCce
Confidence            5443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.16  E-value=3.1e-10  Score=117.82  Aligned_cols=226  Identities=11%  Similarity=-0.003  Sum_probs=149.1

Q ss_pred             cccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccC
Q 046036           24 QGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSI  103 (614)
Q Consensus        24 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  103 (614)
                      ......+|.++++|+.+.+.++. ..+....   |.++. +|+.+++..| ++......|.++..|+.+.+..+...  +
T Consensus       151 ~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~---F~~c~-~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i  222 (394)
T 4fs7_A          151 TVIGDEAFATCESLEYVSLPDSM-ETLHNGL---FSGCG-KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--L  222 (394)
T ss_dssp             CEECTTTTTTCTTCCEEECCTTC-CEECTTT---TTTCT-TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--E
T ss_pred             cccchhhhcccCCCcEEecCCcc-ceecccc---ccCCC-CceEEEcCCC-ceEeCchhhccccccceeecCCCceE--e
Confidence            33456678888889999887654 3244445   66666 7888888776 55455667888888888888766543  2


Q ss_pred             CccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCC
Q 046036          104 PFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNF  183 (614)
Q Consensus       104 p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  183 (614)
                      ...+....+|+.+.            +..+ ++......|..+.+|+.+.+..+... .....+.....++.+.+..+.+
T Consensus       223 ~~~~~~~~~l~~i~------------ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i  288 (394)
T 4fs7_A          223 GDFALSKTGVKNII------------IPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV  288 (394)
T ss_dssp             CTTTTTTCCCCEEE------------ECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred             ehhhcccCCCceEE------------ECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence            23333445666554            4322 23344456777777777777766543 4556667777777777766543


Q ss_pred             ccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCccc
Q 046036          184 NGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKEL  263 (614)
Q Consensus       184 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  263 (614)
                      .   ...|..+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.+-..+|.++.+|+.+++..| ++.....+|
T Consensus       289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF  362 (394)
T 4fs7_A          289 P---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF  362 (394)
T ss_dssp             C---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred             c---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence            2   235667777777777654 55555667777778887777644 55455667777888888888766 665666778


Q ss_pred             CCCCCCCEEECcCC
Q 046036          264 ETLPFLENLNLSFN  277 (614)
Q Consensus       264 ~~l~~L~~L~ls~N  277 (614)
                      .++++|+.+++..+
T Consensus       363 ~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          363 QGCINLKKVELPKR  376 (394)
T ss_dssp             TTCTTCCEEEEEGG
T ss_pred             hCCCCCCEEEECCC
Confidence            88888888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.14  E-value=1e-09  Score=113.88  Aligned_cols=257  Identities=10%  Similarity=0.099  Sum_probs=173.6

Q ss_pred             cccCCCCCCeeeecCCc---ccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCC
Q 046036            6 EIGNLFRLQNLNFGNST---VQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAG   82 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~   82 (614)
                      +|.++++|+.+.+..|.   ++.+-..+|..+.+|+.+.+..+ ++.+....   |.++. +|+.+.+..+ +.......
T Consensus        82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a---F~~c~-~L~~i~lp~~-~~~I~~~~  155 (394)
T 4gt6_A           82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA---FHHCE-ELDTVTIPEG-VTSVADGM  155 (394)
T ss_dssp             TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT---TTTCT-TCCEEECCTT-CCEECTTT
T ss_pred             HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh---hhhhc-ccccccccce-eeeecccc
Confidence            57788999999998764   77677788999999998888765 55344445   56665 7888888654 33355566


Q ss_pred             CcCCCCCCEEeccCCcCcccCCccccCCCCCCccccccccc------------cc-------------------------
Q 046036           83 IPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL------------YS-------------------------  125 (614)
Q Consensus        83 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~------------~l-------------------------  125 (614)
                      |..+.+|+.+.+..+ ++.+....|.. .+|+.+.+ |..+            .+                         
T Consensus       156 F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~i-p~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~  232 (394)
T 4gt6_A          156 FSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHI-PAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGD  232 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEE-CTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSC
T ss_pred             eecccccccccccce-eeEeccccccc-cceeEEEE-CCcccccccchhhhccccceecccccccccccceeeccccccc
Confidence            777777887777654 33333344432 33444432 1000            01                         


Q ss_pred             ------------ceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccC
Q 046036          126 ------------FQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGS  193 (614)
Q Consensus       126 ------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  193 (614)
                                  ..+.+. +.++......|.++.+|+.+.+..+... .....+.++++|+.+.+. +.++......|.+
T Consensus       233 ~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~  309 (394)
T 4gt6_A          233 YALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAG  309 (394)
T ss_dssp             EEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTT
T ss_pred             ccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecC
Confidence                        111111 2233334567889999999999876544 566778899999999997 4566566678999


Q ss_pred             CCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEE
Q 046036          194 LSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLN  273 (614)
Q Consensus       194 l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  273 (614)
                      +.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+-..+|.++++|+.+++.++....   ..+.....|+.+.
T Consensus       310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~  384 (394)
T 4gt6_A          310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP  384 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred             CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence            999999999865 66677789999999999999765 665667789999999999999986542   4567788899888


Q ss_pred             CcCCcC
Q 046036          274 LSFNNF  279 (614)
Q Consensus       274 ls~N~l  279 (614)
                      +..|.+
T Consensus       385 i~~~~~  390 (394)
T 4gt6_A          385 VAPGSI  390 (394)
T ss_dssp             ------
T ss_pred             eCCCCE
Confidence            877654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=6.6e-11  Score=120.42  Aligned_cols=185  Identities=17%  Similarity=0.169  Sum_probs=104.4

Q ss_pred             cCCCCCCCCcEEecccccCcc-----cCCcChhh-hccccccccEEEccCCc-ccccCCCCCcCCCCCCEEeccCCcCcc
Q 046036           29 SHLSPTSKLTYLSLFSNNLHG-----IIPPSLDS-FTNLSTKLRILDAGGNQ-FAGDIPAGIPKYFNLIQLGLDRNCLAG  101 (614)
Q Consensus        29 ~~~~~l~~L~~L~L~~N~l~~-----~~p~~~~~-~~~l~~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~  101 (614)
                      .+...+++|+.|.+..+....     .-...+.. +..++ +|+.|+|++|. +  .++. +. +++|++|+|..|.++.
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g~~~l--~l~~-~~-~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNNL--SIGK-KP-RPNLKSLEIISGGLPD  207 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEECCBTC--BCCS-CB-CTTCSEEEEECSBCCH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeCCCCc--eecc-cc-CCCCcEEEEecCCCCh
Confidence            345556677777775543210     00011111 34455 78888887773 2  2333 33 6788888888777764


Q ss_pred             cCCcccc--CCCCCCcccccccccccceEecCCCccccc-----cchhh--hccCCCCeeecccccCCCCCCCCC---CC
Q 046036          102 SIPFSIG--KLQNLQKLNPLATSLYSFQLNLAENNLTGN-----IPESL--ENLTSLQILNLSCNHLGGSIPKPS---GL  169 (614)
Q Consensus       102 ~~p~~~~--~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~-----~~~~~--~~l~~L~~L~L~~N~l~~~~p~~~---~~  169 (614)
                      .....+.  .+++|+.|+          |.+..|...+.     +...+  ..+++|++|+|++|.+.+..+..+   ..
T Consensus       208 ~~l~~l~~~~lp~L~~L~----------L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~  277 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLV----------LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI  277 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEE----------EECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred             HHHHHHHHccCCCCcEEE----------EeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence            4333343  577777776          11112221111     11122  246888888888888763222111   24


Q ss_pred             CCCCCEEEcCCCCCccC----CcccccCCCCCceeccCCccCCCCccccccC-cccchHHhccCcc
Q 046036          170 FSTLSSIDFAHNNFNGS----LPLEVGSLSNTQELDFSEHMLSDEIPITLGN-RSKFEHLLLGGNM  230 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~  230 (614)
                      +++|++|+|+.|.|++.    ++..+..+++|+.|+|++|.++...-..+.. +  ...++++.++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            67899999999888753    2333456788999999998887543333322 1  2346777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=2e-10  Score=116.93  Aligned_cols=159  Identities=17%  Similarity=0.139  Sum_probs=86.9

Q ss_pred             CCCcEEecccccCcc-cCCcC----hhhhccccccccEEEccCCccc---------ccCCCCCcCCCCCCEEeccCCcCc
Q 046036           35 SKLTYLSLFSNNLHG-IIPPS----LDSFTNLSTKLRILDAGGNQFA---------GDIPAGIPKYFNLIQLGLDRNCLA  100 (614)
Q Consensus        35 ~~L~~L~L~~N~l~~-~~p~~----~~~~~~l~~~L~~L~L~~N~l~---------~~~p~~~~~l~~L~~L~L~~N~l~  100 (614)
                      ..++.|.+......+ .....    ..+...++ +|+.|.+.++...         +.++..+..+++|+.|+|++|.-.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~-~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFA-HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHT-TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcc-hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            346677776554432 11001    11144566 8889988765431         112333466789999999887311


Q ss_pred             ccCCccccCCCCCCcccccccccccceEecCCCccccccchhhh--ccCCCCeeeccc--ccCCCCC-----CCCC--CC
Q 046036          101 GSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLE--NLTSLQILNLSC--NHLGGSI-----PKPS--GL  169 (614)
Q Consensus       101 ~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~--N~l~~~~-----p~~~--~~  169 (614)
                       .++. +. +++|+.|+            |..|.++......+.  .+++|++|+|+.  |...+..     ...+  ..
T Consensus       186 -~l~~-~~-~~~L~~L~------------L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~  250 (362)
T 2ra8_A          186 -SIGK-KP-RPNLKSLE------------IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR  250 (362)
T ss_dssp             -BCCS-CB-CTTCSEEE------------EECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred             -eecc-cc-CCCCcEEE------------EecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence             2222 32 66677666            888877654444554  688898888863  2221110     0111  24


Q ss_pred             CCCCCEEEcCCCCCccCCccccc---CCCCCceeccCCccCCC
Q 046036          170 FSTLSSIDFAHNNFNGSLPLEVG---SLSNTQELDFSEHMLSD  209 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~ls~N~l~~  209 (614)
                      +++|+.|+|.+|.++...+..+.   .+++|++|+|+.|.+++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            66777777777776543322222   34556666666665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.92  E-value=5.8e-08  Score=100.02  Aligned_cols=82  Identities=11%  Similarity=0.051  Sum_probs=50.2

Q ss_pred             ccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCC
Q 046036            7 IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY   86 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l   86 (614)
                      +....+|+.+.+. ..++.+...+|.++++|+.++|..+ ++.+...+   |.+.  +|+.+.+..+ ++.....+|.. 
T Consensus        42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a---F~~c--~l~~i~~~~~-l~~I~~~aF~~-  112 (379)
T 4h09_A           42 YKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGA---FADT--KLQSYTGMER-VKKFGDYVFQG-  112 (379)
T ss_dssp             GGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTT---TTTC--CCCEEEECTT-CCEECTTTTTT-
T ss_pred             cccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhh---hcCC--CCceEECCce-eeEeccceecc-
Confidence            3445678888775 3466667778888888888888654 66455555   4443  4666666543 44333344443 


Q ss_pred             CCCCEEeccCC
Q 046036           87 FNLIQLGLDRN   97 (614)
Q Consensus        87 ~~L~~L~L~~N   97 (614)
                      .+|+.+.+..+
T Consensus       113 ~~L~~i~lp~~  123 (379)
T 4h09_A          113 TDLDDFEFPGA  123 (379)
T ss_dssp             CCCSEEECCTT
T ss_pred             CCcccccCCCc
Confidence            36777777544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.72  E-value=5.1e-10  Score=120.63  Aligned_cols=111  Identities=17%  Similarity=0.209  Sum_probs=79.6

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeecccccccccC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      .++..++|||||++|+|.+++..     .+.|  ..+++.++              |+|||++.  .+||+|||+++...
T Consensus       410 ~~~~~~lVmE~~~ggsL~~~l~~-----~~~i--~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~  480 (540)
T 3en9_A          410 DLDNKRIMMSYINGKLAKDVIED-----NLDI--AYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISN  480 (540)
T ss_dssp             ETTTTEEEEECCCSEEHHHHSTT-----CTHH--HHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECC
T ss_pred             eCCccEEEEECCCCCCHHHHHHH-----HHHH--HHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECC
Confidence            45567999999999999999975     1222  22222222              99999999  99999999999875


Q ss_pred             CCCCCCCCCCcCcccccccccccc-cc----cCCCCccCceeehhHHHHHHHhCCCCCC
Q 046036          458 TNVTNPMKGQSNSAAVWGSIGYNM-EW----VARYQHKGKGYSCGILLLEIMTGKRPTD  511 (614)
Q Consensus       458 ~~~~~~~~~~~~~~~~~gt~~y~a-E~----~~~~~~k~DVySfGvvllElltG~~p~~  511 (614)
                      ................+||+.|+| |+    ...|+.++|+||..+-.+|-+.++.+|.
T Consensus       481 ~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          481 LDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             CccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            432100000001235789999977 87    2567888999999999999999888774

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.70  E-value=6.2e-07  Score=92.23  Aligned_cols=254  Identities=9%  Similarity=0.060  Sum_probs=132.8

Q ss_pred             cccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcC
Q 046036            6 EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK   85 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~   85 (614)
                      +|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+....   |...  +|+.+.+..+- +......|.+
T Consensus        64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a---F~~~--~L~~i~lp~~~-~~i~~~~F~~  134 (379)
T 4h09_A           64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYV---FQGT--DLDDFEFPGAT-TEIGNYIFYN  134 (379)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTT---TTTC--CCSEEECCTTC-CEECTTTTTT
T ss_pred             HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccce---eccC--CcccccCCCcc-cccccccccc
Confidence            5777888999988654 776777788887 5888877654 55444444   4442  78888887653 3234444544


Q ss_pred             CCCCCEEeccCCcCcccCCccccCCCCCCccccccccc------------------------ccceEecCCCccccccch
Q 046036           86 YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL------------------------YSFQLNLAENNLTGNIPE  141 (614)
Q Consensus        86 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~------------------------~l~~L~L~~N~l~~~~~~  141 (614)
                       .+|+.+.+..+ ++......|..+.+++.+.+.....                        .+..+.+..+ .......
T Consensus       135 -~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~  211 (379)
T 4h09_A          135 -SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAY  211 (379)
T ss_dssp             -CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTT
T ss_pred             -ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccc-eeEEeec
Confidence             36777776543 4546666777777777665311111                        0111111111 1112223


Q ss_pred             hhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccc
Q 046036          142 SLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKF  221 (614)
Q Consensus       142 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L  221 (614)
                      .+....+|+.+.+..+ +.......+.....|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.++.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3444455555554433 22233344445555555555543 33333444555555555555432 333334455555555


Q ss_pred             hHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECc
Q 046036          222 EHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLS  275 (614)
Q Consensus       222 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls  275 (614)
                      +.+.+.++.++.+-..+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            55555555555444445555555555555433 443444455555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.51  E-value=6.9e-09  Score=100.08  Aligned_cols=107  Identities=23%  Similarity=0.275  Sum_probs=66.3

Q ss_pred             CCCCCCCcE--EecccccCcccCCcChhh-hccccccccEEEccCCcccc--cCCCCCcCCCCCCEEeccCCcCcccCCc
Q 046036           31 LSPTSKLTY--LSLFSNNLHGIIPPSLDS-FTNLSTKLRILDAGGNQFAG--DIPAGIPKYFNLIQLGLDRNCLAGSIPF  105 (614)
Q Consensus        31 ~~~l~~L~~--L~L~~N~l~~~~p~~~~~-~~~l~~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~  105 (614)
                      |...+.|+.  ++++.|... .++..+.. ..+++ +|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  .
T Consensus       137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~  212 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R  212 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G
T ss_pred             cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h
Confidence            444445555  666777443 22222211 13455 78888888888876  3455566788888888888888754  2


Q ss_pred             cccCCC--CCCcccccccccccceEecCCCccccccc-------hhhhccCCCCeee
Q 046036          106 SIGKLQ--NLQKLNPLATSLYSFQLNLAENNLTGNIP-------ESLENLTSLQILN  153 (614)
Q Consensus       106 ~~~~l~--~L~~L~l~~~~~~l~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~  153 (614)
                      .+..+.  +|++|            +|++|.+.+..|       ..+..+++|+.||
T Consensus       213 ~l~~l~~l~L~~L------------~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          213 ELDKIKGLKLEEL------------WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGGGTTSCCSEE------------ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhhhcccCCcceE------------EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            344444  44444            488888876554       2467888888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=1.9e-08  Score=92.21  Aligned_cols=18  Identities=17%  Similarity=0.145  Sum_probs=9.3

Q ss_pred             CCCCCCCcEEecccc-cCc
Q 046036           31 LSPTSKLTYLSLFSN-NLH   48 (614)
Q Consensus        31 ~~~l~~L~~L~L~~N-~l~   48 (614)
                      +...++|++|+|++| .+.
T Consensus        32 l~~~~~L~~L~L~~n~~i~   50 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIP   50 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCC
T ss_pred             HhcCCCCCEEEecCCCCCC
Confidence            344455555555555 554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=1.8e-08  Score=92.33  Aligned_cols=96  Identities=16%  Similarity=0.210  Sum_probs=67.6

Q ss_pred             cccCCCCCCeeeecCC-ccccc----CCcCCCCCCCCcEEecccccCcccCCcChhh-hccccccccEEEccCCccccc-
Q 046036            6 EIGNLFRLQNLNFGNS-TVQGE----IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDS-FTNLSTKLRILDAGGNQFAGD-   78 (614)
Q Consensus         6 ~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~l~~~L~~L~L~~N~l~~~-   78 (614)
                      .+...++|++|+|++| .|...    +.+.+...++|++|+|++|.|....-..+.. +...+ +|++|+|++|.|+.. 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHH
Confidence            4556889999999999 88743    3455677889999999999997433222211 33444 788888888888743 


Q ss_pred             ---CCCCCcCCCCCCEEec--cCCcCccc
Q 046036           79 ---IPAGIPKYFNLIQLGL--DRNCLAGS  102 (614)
Q Consensus        79 ---~p~~~~~l~~L~~L~L--~~N~l~~~  102 (614)
                         +...+...++|++|+|  ++|.++..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence               3445666677888888  77777643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=2.8e-08  Score=95.81  Aligned_cols=63  Identities=24%  Similarity=0.297  Sum_probs=28.2

Q ss_pred             ccCCCCeeecccccCCC--CCCCCCCCCCCCCEEEcCCCCCccCCcccccCCC--CCceeccCCccCCC
Q 046036          145 NLTSLQILNLSCNHLGG--SIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLS--NTQELDFSEHMLSD  209 (614)
Q Consensus       145 ~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~ls~N~l~~  209 (614)
                      ++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|++|+|++|.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            34455555555555543  1223333445555555555555432  1222222  45555555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=9.2e-07  Score=79.02  Aligned_cols=83  Identities=12%  Similarity=0.108  Sum_probs=40.4

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEeccccc-CcccCCcChhhhccc---cccccEEEccCCc-ccccCCCCCcCC
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNN-LHGIIPPSLDSFTNL---STKLRILDAGGNQ-FAGDIPAGIPKY   86 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~l---~~~L~~L~L~~N~-l~~~~p~~~~~l   86 (614)
                      +|+.|||++|.|+..--..+.++++|++|+|++|. |+..   .+..+..+   ..+|++|+|++|. ++..--..+..+
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~---gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG---CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH---HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH---HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            45666666666555444455556666666666653 4422   11122221   1145556665553 443222234455


Q ss_pred             CCCCEEeccCC
Q 046036           87 FNLIQLGLDRN   97 (614)
Q Consensus        87 ~~L~~L~L~~N   97 (614)
                      ++|++|+|+++
T Consensus       139 ~~L~~L~L~~c  149 (176)
T 3e4g_A          139 RNLKYLFLSDL  149 (176)
T ss_dssp             TTCCEEEEESC
T ss_pred             CCCCEEECCCC
Confidence            55555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.67  E-value=7.9e-06  Score=72.93  Aligned_cols=30  Identities=13%  Similarity=0.210  Sum_probs=13.3

Q ss_pred             CCCEEeccCCcCcccCCccccCCCCCCccc
Q 046036           88 NLIQLGLDRNCLAGSIPFSIGKLQNLQKLN  117 (614)
Q Consensus        88 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  117 (614)
                      +|++|||+++.++...-..+.++++|+.|+
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~   91 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIR   91 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEE
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEE
Confidence            455555555554433333334444444433

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=97.57  E-value=3.9e-05  Score=75.14  Aligned_cols=57  Identities=16%  Similarity=0.116  Sum_probs=41.0

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeecccccccccC
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      +..++|||||++|+|.+ +....   .  .....+++.++              |+|||++ ++.+||+|||+|+...
T Consensus       173 ~~~~lvmE~~~g~~L~~-l~~~~---~--~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~~~  243 (282)
T 1zar_A          173 EGNAVLMELIDAKELYR-VRVEN---P--DEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEVG  243 (282)
T ss_dssp             ETTEEEEECCCCEEGGG-CCCSC---H--HHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCEETT
T ss_pred             cceEEEEEecCCCcHHH-cchhh---H--HHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCeECC
Confidence            45699999999999999 54211   1  12223333333              9999999 9999999999997543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.22  E-value=5.6e-05  Score=68.79  Aligned_cols=19  Identities=21%  Similarity=0.251  Sum_probs=11.1

Q ss_pred             hhhhccCCCCeeecccccC
Q 046036          141 ESLENLTSLQILNLSCNHL  159 (614)
Q Consensus       141 ~~~~~l~~L~~L~L~~N~l  159 (614)
                      ..+..-+.|+.|+++.|.+
T Consensus       151 ~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          151 MAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCCcCeEeccCCCc
Confidence            4455556666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.02  E-value=0.00019  Score=65.22  Aligned_cols=66  Identities=12%  Similarity=0.192  Sum_probs=35.0

Q ss_pred             hhhccCCCCeeecccccCCCC----CCCCCCCCCCCCEEEcCCC---CCcc----CCcccccCCCCCceeccCCccC
Q 046036          142 SLENLTSLQILNLSCNHLGGS----IPKPSGLFSTLSSIDFAHN---NFNG----SLPLEVGSLSNTQELDFSEHML  207 (614)
Q Consensus       142 ~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N---~l~~----~~~~~~~~l~~L~~L~ls~N~l  207 (614)
                      .+..-+.|++|+|++|.|...    +-..+..-+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+
T Consensus        93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            344445666666666666522    1123344455777777654   2221    1223345556777777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.69  E-value=0.0022  Score=54.35  Aligned_cols=36  Identities=19%  Similarity=0.062  Sum_probs=19.7

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcC
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCL   99 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l   99 (614)
                      +|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455555555555544444455555555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.41  E-value=0.0045  Score=52.35  Aligned_cols=50  Identities=22%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             cEEEccCCccc-ccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccc
Q 046036           66 RILDAGGNQFA-GDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN  117 (614)
Q Consensus        66 ~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  117 (614)
                      ..++.+++.++ ..+|..+.  .+|++|+|++|+|+.+.+..|..+++|+.|+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   61 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAH   61 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEE
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEE
Confidence            35777777775 24555443  2677777777777755555566666666555

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=96.21  E-value=0.002  Score=61.92  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             CCceeeCCCCCeeecccccccccC
Q 046036          434 PSNVLLDYDMTAYVGDFGLARFLP  457 (614)
Q Consensus       434 ~~NILld~~~~~kl~DfGla~~~~  457 (614)
                      |+|||+++  .++|+|||+|....
T Consensus       199 p~NILl~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          199 EYNIMYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             TTSEEESS--SEEECCCTTCEETT
T ss_pred             HHHEEEcC--cEEEEECcccccCC
Confidence            99999998  99999999997653

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=89.00  E-value=0.19  Score=50.75  Aligned_cols=54  Identities=9%  Similarity=0.102  Sum_probs=35.8

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCC----------eeecccc
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMT----------AYVGDFG  451 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~----------~kl~DfG  451 (614)
                      .+|||||+++++|.++..... ...+ +   .+++.++              |.|||+++++.          +.|.||+
T Consensus       186 ~~LVME~i~G~~L~~l~~~~~-~~~l-~---~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~  260 (397)
T 4gyi_A          186 HTIVMSLVDALPMRQVSSVPD-PASL-Y---ADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFP  260 (397)
T ss_dssp             TEEEEECCSCEEGGGCCCCSC-HHHH-H---HHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCT
T ss_pred             ceEEEEecCCccHhhhcccHH-HHHH-H---HHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeC
Confidence            379999999999988764321 1111 1   1222222              99999988763          7899999


Q ss_pred             ccc
Q 046036          452 LAR  454 (614)
Q Consensus       452 la~  454 (614)
                      -+-
T Consensus       261 Q~V  263 (397)
T 4gyi_A          261 QMV  263 (397)
T ss_dssp             TCE
T ss_pred             Ccc
Confidence            764

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=81.82  E-value=0.27  Score=48.00  Aligned_cols=78  Identities=14%  Similarity=0.118  Sum_probs=41.8

Q ss_pred             CCceeeCC--CCCeeecccccccccCCCCCC-CCCCC---cC---ccccccccccc--ccccCCCCccCceeehhHHHHH
Q 046036          434 PSNVLLDY--DMTAYVGDFGLARFLPTNVTN-PMKGQ---SN---SAAVWGSIGYN--MEWVARYQHKGKGYSCGILLLE  502 (614)
Q Consensus       434 ~~NILld~--~~~~kl~DfGla~~~~~~~~~-~~~~~---~~---~~~~~gt~~y~--aE~~~~~~~k~DVySfGvvllE  502 (614)
                      |.||++++  ...+.|.||+.+..-....+- .....   ..   .......+++.  +++..+.....+.|++|+++++
T Consensus       200 ~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~  279 (304)
T 3sg8_A          200 SDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYG  279 (304)
T ss_dssp             GGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999998  456789999998754321100 00000   00   00000001110  1111122233578999999999


Q ss_pred             HHhCCCCCC
Q 046036          503 IMTGKRPTD  511 (614)
Q Consensus       503 lltG~~p~~  511 (614)
                      +.+|+.++.
T Consensus       280 ~~~g~~~~~  288 (304)
T 3sg8_A          280 KEYGYMDWY  288 (304)
T ss_dssp             HHTTCHHHH
T ss_pred             HHcCCHHHH
Confidence            999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	614
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-14
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-14
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-14
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-14
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-14
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	5e-14
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	9e-14
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-13
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-13
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-13
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	7e-13
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-13
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-12
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-12
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	5e-12
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-12
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-11
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-11
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-11
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-11
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-11
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-11
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-11
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-11
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-11
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-10
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-10
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-10
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-10
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	4e-10
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	4e-10
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-10
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	6e-09
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-09
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-08
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-08
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-07
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	4e-07
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-07
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	7e-07
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-07
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	8e-07
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-04
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-06
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	8e-06
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	9e-06
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-05
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-05
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-05
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 3e-20
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 39/206 (18%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------P 434
               A+  ++    SL   LH  E   + ++ + + IA                      
Sbjct: 75  APQLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKS 132

Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG- 493
           +N+ L  D+T  +GDFGLA            G      + GSI +    V R Q K    
Sbjct: 133 NNIFLHEDLTVKIGDFGLATVKS-----RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 187

Query: 494 -----YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE-------MALPESVMELVYSRLL 541
                Y+ GI+L E+MTG+ P   +      +              +  +  + +   + 
Sbjct: 188 FQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMA 247

Query: 542 QGVDKDAEDEPCMKAKIRECLTSLGR 567
           + + K  ++ P    +I   +  L R
Sbjct: 248 ECLKKKRDERPLFP-QILASIELLAR 272

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.0 bits (219), Expect = 5e-20
 Identities = 70/275 (25%), Positives = 108/275 (39%), Gaps = 14/275 (5%)

Query: 32  SPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ 91
           + T ++  L L   NL    P    S  NL     +   G N   G IP  I K   L  
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 92  LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQI 151
           L +    ++G+IP  + +++ L  L+               N L+G +P S+ +L +L  
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFS------------YNALSGTLPPSISSLPNLVG 153

Query: 152 LNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEI 211
           +    N + G+IP   G FS L +      N          +  N   +D S +ML  + 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 212 PITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLEN 271
            +      K    +              G  K    L+L +N + GT+P+ L  L FL +
Sbjct: 214 SVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 272 LNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGG 306
           LN+SFNN  G++P         V +   N  LCG 
Sbjct: 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 5e-12
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 129 NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLP 188
           +L  N + G +P+ L  L  L  LN+S N+L G IP   G         +A+N      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

Query: 189 L 189
           L
Sbjct: 309 L 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 94  LDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILN 153
           L  N + G++P  + +L+ L  LN            ++ NNL G IP+   NL    +  
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLN------------VSFNNLCGEIPQ-GGNLQRFDVSA 297

Query: 154 LSCNHLGGSIPKPS 167
            + N      P P+
Sbjct: 298 YANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 1   GNVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNN-LHGIIPPS 54
           G +PQ +  L  L +LN   + + GEIP       +    +  +N  L G   P+
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 8e-17
 Identities = 49/293 (16%), Positives = 92/293 (31%), Gaps = 29/293 (9%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLS 62
           VP+++        L+  N+ +             L  L L +N +  I P +        
Sbjct: 25  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK-- 80

Query: 63  TKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATS 122
             L  L    NQ   ++P  +PK     +L +  N +          L  +  +      
Sbjct: 81  --LERLYLSKNQL-KELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVE----- 130

Query: 123 LYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNN 182
                L       +G    + + +  L  + ++  ++      P GL  +L+ +    N 
Sbjct: 131 -----LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNK 182

Query: 183 FNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSF 242
                   +  L+N  +L  S + +S     +L N      L L  N    ++P      
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 241

Query: 243 KGTIDLNLSHNNLSG------TIPKELETLPFLENLNLSFNNFEGQLPSMSVF 289
           K    + L +NN+S         P           ++L  N  +      S F
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 10/194 (5%)

Query: 166 PSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLL 225
           P  L    + +D  +N        +  +L N   L    + +S   P       K E L 
Sbjct: 26  PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85

Query: 226 LGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS 285
           L  N  +        + +           +  ++   L  +  +E       +   +  +
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 286 MSVFTNTSVISIVGNG------KLCGGVPELRL----LSCAIESSKKQIHHLGTKIYSYN 335
                  S I I           L   + EL L    ++    +S K +++L     S+N
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 336 SLWGCLFDILIMLS 349
           S+       L    
Sbjct: 206 SISAVDNGSLANTP 219

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 2e-16
 Identities = 43/270 (15%), Positives = 77/270 (28%), Gaps = 25/270 (9%)

Query: 26  EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPK 85
            +P  +        + L  N +  +   S  +  NL+      +        D  A    
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSN---VLARIDAAAFTGL 79

Query: 86  YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN-------PLATSLYSFQLNL-----AEN 133
                    D   L    P +   L  L  L+        L   L+     L      +N
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 134 NLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGS 193
            L     ++  +L +L  L L  N +     +      +L  +    N      P     
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 194 LSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG--RIPPFFGSFKGTIDLNLS 251
           L     L    + LS      L      ++L L  N +    R  P +   +       S
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ---KFRGS 256

Query: 252 HNNLSGTIPKELETLPFLENLNLSFNNFEG 281
            + +  ++P+ L          L+ N+ +G
Sbjct: 257 SSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 2e-10
 Identities = 50/275 (18%), Positives = 76/275 (27%), Gaps = 29/275 (10%)

Query: 79  IPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSF------------ 126
           +P GIP      ++ L  N ++     S    +NL  L   +  L               
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 127 -QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNG 185
                    L    P +   L  L  L+L    L    P      + L  +    N    
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 186 SLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT 245
                   L N   L    + +S             + LLL  N      P  F      
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCG 305
           + L L  NNLS    + L  L  L+ L L+ N +     +  ++          +   C 
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263

Query: 306 GVPELRLLSCAIESSKKQIHHLGTKIYSYNSLWGC 340
               L           + +  L     + N L GC
Sbjct: 264 LPQRLA---------GRDLKRL-----AANDLQGC 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 45/205 (21%), Positives = 68/205 (33%), Gaps = 20/205 (9%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
           P     L RL  L+     +Q   P      + L YL L  N L  +   +     N   
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN--- 154

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
            L  L   GN+ +           +L +L L +N +A   P +   L             
Sbjct: 155 -LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG------------ 201

Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNF 183
               L L  NNL+    E+L  L +LQ L L+ N           L++ L     + +  
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 260

Query: 184 NGSLPLEVGSLSNTQELDFSEHMLS 208
             SLP     L+       + + L 
Sbjct: 261 PCSLP---QRLAGRDLKRLAANDLQ 282

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (176), Expect = 1e-14
 Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 47/195 (24%)

Query: 392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------ 433
           G     L  E M +G+L+++L      + + +         I                  
Sbjct: 83  GKKCIVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRD 139

Query: 434 --PSNVLL-DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA----- 485
               N+ +     +  +GD GLA     +    + G               E++A     
Sbjct: 140 LKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIG-------------TPEFMAPEMYE 186

Query: 486 -RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRL---- 540
            +Y      Y+ G+ +LE+ T + P  E                P S  ++    +    
Sbjct: 187 EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEII 246

Query: 541 LQGVDKDAEDEPCMK 555
              + ++ ++   +K
Sbjct: 247 EGCIRQNKDERYSIK 261

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-14
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           L  E    G L  +L        + ++   ++   +                    NVLL
Sbjct: 85  LVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLL 142

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---YSC 496
                A + DFGL++ L  + +      +  +A    + +       ++        +S 
Sbjct: 143 VNRHYAKISDFGLSKALGADDSY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSY 198

Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPC 553
           G+ + E ++ G++P  +M    +   +     M  P      +Y+ +        ED P 
Sbjct: 199 GVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPD 258

Query: 554 MK---AKIRECLTSL 565
                 ++R C  SL
Sbjct: 259 FLTVEQRMRACYYSL 273

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 3e-14
 Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 32/189 (16%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           +  E+M NGSL  +L       +L + + L +A  I                   +N+L+
Sbjct: 84  IITEYMENGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILV 142

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---YSC 496
              ++  + DFGLAR +  N     +G          I +       Y         +S 
Sbjct: 143 SDTLSCKIADFGLARLIEDNEYTAREG------AKFPIKWTAPEAINYGTFTIKSDVWSF 196

Query: 497 GILLLEIMTGKRPTDEMFADCLSLHNFCE---MALPESVMELVYSRLLQGVDKDAEDEPC 553
           GILL EI+T  R       +   + N      M  P++  E +Y  +     +  ED P 
Sbjct: 197 GILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

Query: 554 MKAKIRECL 562
               +R  L
Sbjct: 257 FD-YLRSVL 264

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 4e-14
 Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 28/198 (14%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRL--------DLAEGLKIAV-------DI-PSN 436
           +    +  EFM NGSL+S+L  N+    +         +A G+K          D+   N
Sbjct: 99  STPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARN 158

Query: 437 VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHKGKG 493
           +L++ ++   V DFGL+RFL  + ++P    +++      I +      +   +      
Sbjct: 159 ILVNSNLVCKVSDFGLSRFLEDDTSDPT--YTSALGGKIPIRWTAPEAIQYRKFTSASDV 216

Query: 494 YSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAED 550
           +S GI++ E+M+ G+RP  +M    +  ++     +  P      ++  +L    KD   
Sbjct: 217 WSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNH 276

Query: 551 EPCMKAKIRECLTSLGRI 568
            P       + + +L ++
Sbjct: 277 RPKF----GQIVNTLDKM 290

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.0 bits (173), Expect = 4e-14
 Identities = 38/218 (17%), Positives = 64/218 (29%), Gaps = 51/218 (23%)

Query: 393 NDFKALAFEFMPNGSLESWLH---------------------PNEATRRLDLAEGLKIAV 431
                L FE+M  G L  +L                       +     L  AE L IA 
Sbjct: 88  GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIAR 147

Query: 432 DI------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAV 473
            +                    N L+  +M   + DFGL+R + +       G       
Sbjct: 148 QVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGN-----D 202

Query: 474 WGSIGYNMEWVAR---YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE---MA 527
              I +          Y  +   ++ G++L EI +         A    ++   +   +A
Sbjct: 203 AIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILA 262

Query: 528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSL 565
            PE+    +Y+ +     K   D P     I   L  +
Sbjct: 263 CPENCPLELYNLMRLCWSKLPADRPSFC-SIHRILQRM 299

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 5e-14
 Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 36/187 (19%)

Query: 398 LAFEFMPNGSLESWLHPNEATR-RLDLAEGLKIAVDI----------------------- 433
           +  E+   G L S +      R  LD    L++   +                       
Sbjct: 82  IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK 141

Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EWVARYQHKGK 492
           P+NV LD      +GDFGLAR L  +        S + A  G+  Y   E + R  +  K
Sbjct: 142 PANVFLDGKQNVKLGDFGLARILNHD-------TSFAKAFVGTPYYMSPEQMNRMSYNEK 194

Query: 493 G--YSCGILLLEIMTGKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDA 548
              +S G LL E+     P        L   +       +P    + +   + + ++   
Sbjct: 195 SDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKD 254

Query: 549 EDEPCMK 555
              P ++
Sbjct: 255 YHRPSVE 261

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 9e-14
 Identities = 30/230 (13%), Positives = 63/230 (27%), Gaps = 42/230 (18%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------------ 433
           L  ++  +GSL  +L+       + +   +K+A+                          
Sbjct: 78  LVSDYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRD 133

Query: 434 --PSNVLLDYDMTAYVGDFGLARFLPTN------VTNPMKGQSNSAAVWGSIGYNMEWVA 485
               N+L+  + T  + D GLA    +         N   G     A             
Sbjct: 134 LKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHF 193

Query: 486 RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVD 545
               +   Y+ G++  EI              L  ++        SV E+      Q + 
Sbjct: 194 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP--SVEEMRKVVCEQKLR 251

Query: 546 KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE 595
            +  +         E L  + +I           R+    +   ++ + +
Sbjct: 252 PNIPNRWQSC----EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 34/180 (18%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           L  E+ P G++   L       + D         ++                  P N+LL
Sbjct: 83  LILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLL 139

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHKGKGYSC 496
                  + DFG +   P++    +          G++ Y    +     +  K   +S 
Sbjct: 140 GSAGELKIADFGWSVHAPSSRRTTLC---------GTLDYLPPEMIEGRMHDEKVDLWSL 190

Query: 497 GILLLEIMTGKRP-TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMK 555
           G+L  E + GK P     + +     +  E   P+ V E     + + +  +    P ++
Sbjct: 191 GVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLR 250

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 42/160 (26%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------- 433
           +   ++  E M  GSL+  L       R+      K+++ +                   
Sbjct: 76  DGEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK 132

Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG 493
           PSN+L++      + DFG++  L  ++ N   G                +++  + +G  
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG-------------TRSYMSPERLQGTH 179

Query: 494 Y-------SCGILLLEIMTGKRPTDEMFADCLSLHNFCEM 526
           Y       S G+ L+E+  G+ P     A  L L   C++
Sbjct: 180 YSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQV 219

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 38/205 (18%)

Query: 385 GSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI----------- 433
           G  ++  G  +  +  E+M  GSL  +L  +     L     LK ++D+           
Sbjct: 67  GVIVEEKGGLY--IVTEYMAKGSLVDYLR-SRGRSVLGGDCLLKFSLDVCEAMEYLEGNN 123

Query: 434 -------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR 486
                    NVL+  D  A V DFGL +   +                  + +      R
Sbjct: 124 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT----------GKLPVKWTAPEALR 173

Query: 487 ---YQHKGKGYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRL 540
              +  K   +S GILL EI + G+ P   +    +   +    +M  P+     VY  +
Sbjct: 174 EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVM 233

Query: 541 LQGVDKDAEDEPCMKAKIRECLTSL 565
                 DA   P    ++RE L  +
Sbjct: 234 KNCWHLDAAMRPSFL-QLREQLEHI 257

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 7e-13
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 53/226 (23%)

Query: 393 NDFKALAFEFMPNGSLESWLH---------------PNEATRRLDLAEGLKIAVDI---- 433
                +  E+   G L ++L                  +    LDL + L  +  +    
Sbjct: 99  GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGM 158

Query: 434 --------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY 479
                           N+LL +     + DFGLAR +  +    +KG          + +
Sbjct: 159 AFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGN-----ARLPVKW 213

Query: 480 NMEWVARYQHKGKG---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE----MALPESV 532
                            +S GI L E+ +               +   +    M  PE  
Sbjct: 214 MAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHA 273

Query: 533 MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPN 578
              +Y  +    D D    P  K    + +  + +     ++E+ N
Sbjct: 274 PAEMYDIMKTCWDADPLKRPTFK----QIVQLIEKQ----ISESTN 311

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 8e-13
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 32/193 (16%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           +  E  P GSL   L  ++      L    + AV +                    N+LL
Sbjct: 87  MVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLL 144

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGK---GYSC 496
                  +GDFGL R LP N  +                +      + +        +  
Sbjct: 145 ATRDLVKIGDFGLMRALPQNDDH----YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMF 200

Query: 497 GILLLEIMT-GKRPTDEMFADCLS---LHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
           G+ L E+ T G+ P   +    +          +  PE   + +Y+ ++Q      ED P
Sbjct: 201 GVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRP 260

Query: 553 CMKAKIRECLTSL 565
                +R+ L   
Sbjct: 261 TF-VALRDFLLEA 272

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (162), Expect = 1e-12
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 35/142 (24%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           +  EF   G++++ +   E  R L  ++   +                        N+L 
Sbjct: 86  ILIEFCAGGAVDAVML--ELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILF 143

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYN-MEWVARYQHKGKGY---- 494
             D    + DFG++           +      +  G+  +   E V     K + Y    
Sbjct: 144 TLDGDIKLADFGVSAKNT-------RTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKA 196

Query: 495 ---SCGILLLEIMTGKRPTDEM 513
              S GI L+E+   + P  E+
Sbjct: 197 DVWSLGITLIEMAEIEPPHHEL 218

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 32/198 (16%)

Query: 393 NDFKALAFEFMPNGSLES------WLHPNEATRRL--DLAEGLKIAVDI--------PSN 436
                L FEFM +G L         L   E    +  D+ EG+    +           N
Sbjct: 72  QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARN 131

Query: 437 VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVA---RYQHKGKG 493
            L+  +    V DFG+ RF+  +      G          + +    V    RY  K   
Sbjct: 132 CLVGENQVIKVSDFGMTRFVLDDQYTSSTG------TKFPVKWASPEVFSFSRYSSKSDV 185

Query: 494 YSCGILLLEIMTGKRPTDEMFADCLSLHNFC---EMALPESVMELVYSRLLQGVDKDAED 550
           +S G+L+ E+ +  +   E  ++   + +      +  P      VY  +     +  ED
Sbjct: 186 WSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPED 245

Query: 551 EPCMKAKIRECLTSLGRI 568
            P         L  L  I
Sbjct: 246 RPAFS----RLLRQLAEI 259

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 41/182 (22%), Positives = 65/182 (35%), Gaps = 31/182 (17%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           +  E+M  GSL  +L   E  + L L + + +A  I                   +N+L+
Sbjct: 88  IVTEYMSKGSLLDFLK-GETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILV 146

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---YSC 496
             ++   V DFGLAR +  N     +G          I +     A Y         +S 
Sbjct: 147 GENLVCKVADFGLARLIEDNEYTARQG------AKFPIKWTAPEAALYGRFTIKSDVWSF 200

Query: 497 GILLLEIMTGKRPTDEMFADCLSLHNFCE---MALPESVMELVYSRLLQGVDKDAEDEPC 553
           GILL E+ T  R       +   L        M  P    E ++  + Q   K+ E+ P 
Sbjct: 201 GILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPT 260

Query: 554 MK 555
            +
Sbjct: 261 FE 262

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 13/189 (6%)

Query: 112 NLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFS 171
            +  + PL       +L+L  N L      +L +LT+L  L+L+ N +    P      +
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 263

Query: 172 TLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMF 231
            L+ +    N  +   PL       T   +   +    E    + N     +L L  N  
Sbjct: 264 KLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 232 QGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
               P    S      L  ++N +S      L  L  +  L+   N     L  ++  T 
Sbjct: 320 SDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD-LTPLANLTR 374

Query: 292 TSVISIVGN 300
            + + +   
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 28/178 (15%)

Query: 4   PQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLST 63
              + +L  L +L+  N+ +    P  LS  +KLT L L +N +  I P        L+ 
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-----LAGLTA 286

Query: 64  KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL 123
              +     N+   +  + I    NL  L L  N ++   P     L  LQ+L       
Sbjct: 287 LTNLEL---NENQLEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLF------ 335

Query: 124 YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
                  A N ++     SL NLT++  L+   N +      P    + ++ +     
Sbjct: 336 ------FANNKVSD--VSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 61/340 (17%), Positives = 108/340 (31%), Gaps = 65/340 (19%)

Query: 6   EIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKL 65
           ++  +  LQ    G  ++ G     +   + LT ++  +N L  I P       NL TKL
Sbjct: 42  DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP-----LKNL-TKL 90

Query: 66  RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYS 125
             +    NQ A   P         + L  ++      +       +     N ++     
Sbjct: 91  VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL 150

Query: 126 FQLNLAENNLTGNIPESLENLTSLQI-------------------------LNLSCNHLG 160
             L   +    GN    L+ L +L                           L  + N + 
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210

Query: 161 GSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSK 220
              P    + + L  +    N         + SL+N  +LD + + +S+  P  L   +K
Sbjct: 211 DITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTK 264

Query: 221 FEHLLLGGNMFQGRIPPFFGSFKGTID--------------------LNLSHNNLSGTIP 260
              L LG N      P    +    ++                    L L  NN+S   P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 261 KELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN 300
             + +L  L+ L  + N     + S++  TN + +S   N
Sbjct: 325 --VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHN 361

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 5e-12
 Identities = 39/213 (18%), Positives = 65/213 (30%), Gaps = 49/213 (23%)

Query: 393 NDFKALAFEFMPNGSLESWLH-------------PNEATRRLDLAEGLKIAVDI------ 433
             +  LA E+ P+G+L  +L               N     L   + L  A D+      
Sbjct: 83  RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDY 142

Query: 434 ------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM 481
                         N+L+  +  A + DFGL+R     V   M            + +  
Sbjct: 143 LSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM--------GRLPVRWMA 194

Query: 482 EWVARYQHKGKG---YSCGILLLEIMTGKRP---TDEMFADCLSLHNFCEMALPESVMEL 535
                Y         +S G+LL EI++                 L     +  P +  + 
Sbjct: 195 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDE 254

Query: 536 VYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRI 568
           VY  + Q   +   + P       + L SL R+
Sbjct: 255 VYDLMRQCWREKPYERPSFA----QILVSLNRM 283

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 7e-12
 Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 28/206 (13%)

Query: 398 LAFEFMPNGSLESWLH-----PNEATRR---LDLAEGLKIAV-------DI-PSNVLLDY 441
           L  + MP G L  ++                + +A+G+           D+   NVL+  
Sbjct: 87  LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKT 146

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYN-MEWVA--RYQHKGKGYSCGI 498
                + DFGLA+ L          + ++      I +  +E +    Y H+   +S G+
Sbjct: 147 PQHVKITDFGLAKLLGAEEK-----EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGV 201

Query: 499 LLLEIMT-GKRPTDEMFADCLS--LHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMK 555
            + E+MT G +P D + A  +S  L     +  P      VY  +++    DA+  P  +
Sbjct: 202 TVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFR 261

Query: 556 AKIRECLTSLGRIGIASLTETPNERM 581
            ++    + + R     L    +ERM
Sbjct: 262 -ELIIEFSKMARDPQRYLVIQGDERM 286

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 39/219 (17%), Positives = 64/219 (29%), Gaps = 54/219 (24%)

Query: 393 NDFKALAFEFMPNGSLESWLH--------------------PNEATRRLDLAEGLKIAVD 432
           +    L FE+   G L ++L                       E    L   + L  A  
Sbjct: 113 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQ 172

Query: 433 I------------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVW 474
           +                    NVL+ +     + DFGLAR + ++    ++G        
Sbjct: 173 VAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGN-----AR 227

Query: 475 GSIGYNMEWVARYQHKGKG---YSCGILLLEIMT-GKRPTDEMFADCL---SLHNFCEMA 527
             + +                 +S GILL EI + G  P   +  D      + N  +M 
Sbjct: 228 LPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMD 287

Query: 528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLG 566
            P    E +Y  +      D+   P          + LG
Sbjct: 288 QPFYATEEIYIIMQSCWAFDSRKRPSFP----NLTSFLG 322

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 37/190 (19%), Positives = 62/190 (32%), Gaps = 28/190 (14%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           +  EFM  G+L  +L      + +     L +A  I                    N L+
Sbjct: 90  IITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLV 148

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGIL 499
             +    V DFGL+R +  +      G       W +         ++  K   ++ G+L
Sbjct: 149 GENHLVKVADFGLSRLMTGDTYTAHAGAKFPIK-WTAPESLAYN--KFSIKSDVWAFGVL 205

Query: 500 LLEIMTGKRPTDEMFADCLSLHNFCE----MALPESVMELVYSRLLQGVDKDAEDEPCMK 555
           L EI T          D   ++   E    M  PE   E VY  +      +  D P   
Sbjct: 206 LWEIATYGMSPYPGI-DLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFA 264

Query: 556 AKIRECLTSL 565
            +I +   ++
Sbjct: 265 -EIHQAFETM 273

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 22/131 (16%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           L F+ M  G L  +L        L   E  KI   +                  P N+LL
Sbjct: 87  LVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILL 143

Query: 440 DYDMTAYVGDFGLARFL-PTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCGI 498
           D DM   + DFG +  L P      + G  +  A         +    Y  +   +S G+
Sbjct: 144 DDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGV 203

Query: 499 LLLEIMTGKRP 509
           ++  ++ G  P
Sbjct: 204 IMYTLLAGSPP 214

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 36/200 (18%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------P 434
                +  E+M NG L ++L       R    + L++  D+                   
Sbjct: 71  QRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAA 128

Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHKG 491
            N L++      V DFGL+R++  +        ++S      + ++   V     +  K 
Sbjct: 129 RNCLVNDQGVVKVSDFGLSRYVLDD------EYTSSVGSKFPVRWSPPEVLMYSKFSSKS 182

Query: 492 KGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE---MALPESVMELVYSRLLQGVDKDA 548
             ++ G+L+ EI +  +   E F +  +  +  +   +  P    E VY+ +     + A
Sbjct: 183 DIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKA 242

Query: 549 EDEPCMKAKIRECLTSLGRI 568
           ++ P  K      L+++  +
Sbjct: 243 DERPTFK----ILLSNILDV 258

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 40/194 (20%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------P 434
            +      E++  G L   +       + DL+     A +I                   
Sbjct: 75  KENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKL 131

Query: 435 SNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG- 493
            N+LLD D    + DFG+ +                    G+  Y    +   Q      
Sbjct: 132 DNILLDKDGHIKIADFGMCKENMLGDAKTNT-------FCGTPDYIAPEILLGQKYNHSV 184

Query: 494 --YSCGILLLEIMTGKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDK 546
             +S G+LL E++ G+ P      +E+F      + F    L +   +L+  +L     +
Sbjct: 185 DWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLL-VKLFV---R 240

Query: 547 DAEDEPCMKAKIRE 560
           + E    ++  IR+
Sbjct: 241 EPEKRLGVRGDIRQ 254

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 36/199 (18%), Positives = 63/199 (31%), Gaps = 32/199 (16%)

Query: 388 MDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------- 433
           +     +   L  E    G L  +L  N   R +     +++   +              
Sbjct: 74  IGICEAESWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEESNFVH 130

Query: 434 ----PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEWVARYQ 488
                 NVLL     A + DFGL++ L  +                 + +   E +  Y+
Sbjct: 131 RDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTH----GKWPVKWYAPECINYYK 186

Query: 489 HKGKG--YSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQG 543
              K   +S G+L+ E  + G++P   M    +   L     M  P      +Y  +   
Sbjct: 187 FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLC 246

Query: 544 VDKDAEDEPCMKAKIRECL 562
              D E+ P   A +   L
Sbjct: 247 WTYDVENRPGFAA-VELRL 264

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 33/186 (17%), Positives = 50/186 (26%), Gaps = 43/186 (23%)

Query: 398 LAFEFMPNGSLESWLHPN----EATRR---LDLAEGLK-------IAVDI-PSNVLLDYD 442
           L  E+    + +          E           +GL        I  D+   N+LL   
Sbjct: 92  LVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEP 151

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY------NMEWVARYQHKGKGYSC 496
               +GDFG A  +    +             G+  +            +Y  K   +S 
Sbjct: 152 GLVKLGDFGSASIMAPANS-----------FVGTPYWMAPEVILAMDEGQYDGKVDVWSL 200

Query: 497 GILLLEIMTGKRPTDEMFADCL-------SLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
           GI  +E+   K P   M A                     E     V    LQ   K  +
Sbjct: 201 GITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFV-DSCLQ---KIPQ 256

Query: 550 DEPCMK 555
           D P  +
Sbjct: 257 DRPTSE 262

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 3e-11
 Identities = 22/141 (15%), Positives = 55/141 (39%), Gaps = 14/141 (9%)

Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEWVARYQHKGK 492
             N+L++ ++   V DFGL+R L  +     +    ++     I +   E ++  +    
Sbjct: 138 ARNILVNSNLVCKVSDFGLSRVLEDD----PEATYTTSGGKIPIRWTAPEAISYRKFTSA 193

Query: 493 G--YSCGILLLEIMTGKRPTDEMFADCLSLHNFCE---MALPESVMELVYSRLLQGVDKD 547
              +S GI++ E+MT         ++   +    +   +  P      +Y  ++Q   ++
Sbjct: 194 SDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQE 253

Query: 548 AEDEPCMKAKIRECLTSLGRI 568
               P       + ++ L ++
Sbjct: 254 RARRPKFA----DIVSILDKL 270

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 3e-11
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 25/203 (12%)

Query: 385 GSSMDSGGNDFKALAFEFMPNGSLESWLHPN----EATRRLDLAEGLKIAV--------- 431
           G  + S G+    +   +M +G L +++            +     +   +         
Sbjct: 95  GICLRSEGSPL--VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFV 152

Query: 432 --DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQ 488
             D+   N +LD   T  V DFGLAR +     + +  ++ +      +        ++ 
Sbjct: 153 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFT 212

Query: 489 HKGKGYSCGILLLEIMTGKRP---TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVD 545
            K   +S G+LL E+MT   P       F   + L     +  PE   + +Y  +L+   
Sbjct: 213 TKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWH 272

Query: 546 KDAEDEPCMKAKIRECLTSLGRI 568
             AE  P       E ++ +  I
Sbjct: 273 PKAEMRPSFS----ELVSRISAI 291

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 36/190 (18%)

Query: 393 NDFKALAFEFMPNGSLESWLHPN----EATRR---LDLAEGLK-------IAVDI-PSNV 437
            + + L  E+   G L   + P+    E   +     L  G+           DI P N+
Sbjct: 75  GNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENL 134

Query: 438 LLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYN-MEWVARYQHKGKG--- 493
           LLD      + DFGLA     N    +  +     + G++ Y   E + R +   +    
Sbjct: 135 LLDERDNLKISDFGLATVFRYNNRERLLNK-----MCGTLPYVAPELLKRREFHAEPVDV 189

Query: 494 YSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM--------ALPESVMELVYSRLLQGVD 545
           +SCGI+L  ++ G+ P D+    C    ++ E          +  + + L+  ++L    
Sbjct: 190 WSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALL-HKILV--- 245

Query: 546 KDAEDEPCMK 555
           ++      + 
Sbjct: 246 ENPSARITIP 255

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 33/192 (17%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           +  E    G L S          LDLA  +  A  +                    NVL+
Sbjct: 84  IIMELCTLGELRS--FLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLV 141

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYN-MEWV--ARYQHKGKGYSC 496
             +    +GDFGL+R++  +          ++     I +   E +   R+      +  
Sbjct: 142 SSNDCVKLGDFGLSRYMEDS------TYYKASKGKLPIKWMAPESINFRRFTSASDVWMF 195

Query: 497 GILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPC 553
           G+ + EI+  G +P   +  + +   + N   + +P +    +YS + +    D    P 
Sbjct: 196 GVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPR 255

Query: 554 MKAKIRECLTSL 565
              +++  L+++
Sbjct: 256 FT-ELKAQLSTI 266

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 24/177 (13%)

Query: 398 LAFEFMPNGSLESWLHP----NEATRRLDLAEGLK----------IAVDI-PSNVLLDYD 442
               +  NG L  ++      +E   R   AE +           I  D+ P N+LL+ D
Sbjct: 85  FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED 144

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHKGKGYSCGIL 499
           M   + DFG A+ L                  G+  Y    +            ++ G +
Sbjct: 145 MHIQITDFGTAKVLSPESKQARANS-----FVGTAQYVSPELLTEKSACKSSDLWALGCI 199

Query: 500 LLEIMTGKRP-TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMK 555
           + +++ G  P                E   PE         + + +  DA      +
Sbjct: 200 IYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCE 256

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 28/184 (15%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRR------LDLAEGLK-------IAVDI-PSNVL 438
            D   +  E++  GSL   +               +  + L+       I  DI   N+L
Sbjct: 89  GDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL 148

Query: 439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEWVAR--YQHKGKGYS 495
           L  D +  + DFG    +          QS  + + G+  +   E V R  Y  K   +S
Sbjct: 149 LGMDGSVKLTDFGFCAQITPE-------QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWS 201

Query: 496 CGILLLEIMTGKRP----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDE 551
            GI+ +E++ G+ P            ++ +   E+  PE +  +    L + +D D E  
Sbjct: 202 LGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKR 261

Query: 552 PCMK 555
              K
Sbjct: 262 GSAK 265

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 4e-10
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 30/191 (15%)

Query: 393 NDFKALAFEFMPNGSLESWLHP-------NEATRRLDLAEGLKIAVDI------------ 433
                +  E M  G L+S+L         N       L++ +++A +I            
Sbjct: 95  GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKF 154

Query: 434 ------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARY 487
                   N ++  D T  +GDFG+ R +         G+      W S     +    +
Sbjct: 155 VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG--VF 212

Query: 488 QHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE---MALPESVMELVYSRLLQGV 544
                 +S G++L EI T      +  ++   L    E   +  P++  ++++  +    
Sbjct: 213 TTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCW 272

Query: 545 DKDAEDEPCMK 555
             + +  P   
Sbjct: 273 QYNPKMRPSFL 283

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (143), Expect = 4e-10
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 33/194 (17%)

Query: 393 NDFKALAFEFMPNGSLESWLHPN----EATRR---LDLAEGLK-------IAVDI-PSNV 437
            D  +   + M  G L   L  +    EA  R    ++  GL+       +  D+ P+N+
Sbjct: 79  PDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANI 138

Query: 438 LLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGYSCG 497
           LLD      + D GLA        +   G       + +     + VA Y      +S G
Sbjct: 139 LLDEHGHVRISDLGLACDFSKKKPHASVGT----HGYMAPEVLQKGVA-YDSSADWFSLG 193

Query: 498 ILLLEIMTGKRPTD--------EMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAE 549
            +L +++ G  P          E+    L++      +    +  L+   LLQ   +D  
Sbjct: 194 CMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLL-EGLLQ---RDVN 249

Query: 550 DEP-CMKAKIRECL 562
               C+    +E  
Sbjct: 250 RRLGCLGRGAQEVK 263

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 4e-10
 Identities = 36/211 (17%), Positives = 61/211 (28%), Gaps = 41/211 (19%)

Query: 393 NDFKALAFEFMPNGSLESWLH-------------PNEATRRLDLAEGLKIAVDI------ 433
                +  EF   G+L ++L               +     L L   +  +  +      
Sbjct: 90  GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEF 149

Query: 434 ------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM 481
                         N+LL       + DFGLAR +  +     KG +     W +     
Sbjct: 150 LASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF 209

Query: 482 EWVARYQHKGKGYSCGILLLEIMTGKRPTDEMFAD----CLSLHNFCEMALPESVMELVY 537
           +    Y  +   +S G+LL EI +               C  L     M  P+     +Y
Sbjct: 210 DR--VYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMY 267

Query: 538 SRLLQGVDKDAEDEPCMKAKIRECLTSLGRI 568
             +L     +    P       E +  LG +
Sbjct: 268 QTMLDCWHGEPSQRPTFS----ELVEHLGNL 294

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 3e-09
 Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 26/211 (12%)

Query: 398 LAFEFMPNGSLESWLH-----PNEATRRL--DLAEGLKIAVDI--------PSNVLLDYD 442
           L F+F  +       +          +R+   L  GL               +NVL+  D
Sbjct: 94  LVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRD 153

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR----YQHKGKGYSCGI 498
               + DFGLAR       +     +N      ++ Y    +      Y      +  G 
Sbjct: 154 GVLKLADFGLARAFSLAKNSQPNRYTN---RVVTLWYRPPELLLGERDYGPPIDLWGAGC 210

Query: 499 LLLEIMTGKRP--TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKA 556
           ++ E+ T       +        +   C    PE    +    L + ++     +  +K 
Sbjct: 211 IMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKD 270

Query: 557 KIRECLTSLGRIGIAS--LTETPNERMGVRE 585
           +++  +     + +    L   P +R+   +
Sbjct: 271 RLKAYVRDPYALDLIDKLLVLDPAQRIDSDD 301

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 45/213 (21%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSL 187
           L+L+EN L      +L   T L  LNL                  +       +N   SL
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 188 PLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTID 247
           PL   +L     LD S + L+      L    + + L L GN  +   P           
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 248 LNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGV 307
           L+L++NNL+      L  L  L+ L L  N+                  + GN  LC   
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC--- 209

Query: 308 PELRLLSCAIESSKKQIHHLGTKIYSYNSLWGC 340
                 +C I   ++ +      +Y +      
Sbjct: 210 ------NCEILYFRRWLQDNAENVYVWKQGVDV 236

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 8/187 (4%)

Query: 3   VPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNN-LHGIIPPSLDSFTNL 61
           +P ++        L+   + +     + L P ++LT L+L         +  +L     L
Sbjct: 25  LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
                 L +            +          L    L G        L+  +       
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 122 SLYSFQL----NLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSID 177
            L         +LA NNLT      L  L +L  L L  N    +IPK       L    
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAF 201

Query: 178 FAHNNFN 184
              N + 
Sbjct: 202 LHGNPWL 208

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 6e-09
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 33/140 (23%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------P 434
            +   + FEF+    +   ++ +     L+  E +     +                  P
Sbjct: 73  MEELVMIFEFISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRP 130

Query: 435 SNVLLDYDMTAYV--GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGK 492
            N++     ++ +   +FG AR L            N   ++ +  Y    V ++     
Sbjct: 131 ENIIYQTRRSSTIKIIEFGQARQLKPG--------DNFRLLFTAPEYYAPEVHQHDVVST 182

Query: 493 G---YSCGILLLEIMTGKRP 509
               +S G L+  +++G  P
Sbjct: 183 ATDMWSLGTLVYVLLSGINP 202

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 6e-09
 Identities = 37/213 (17%), Positives = 62/213 (29%), Gaps = 46/213 (21%)

Query: 393 NDFKALAFEFMPNGSLESWLHPN-------------EATRRLDLAEGLKIAVDI------ 433
           +    +  E+   G+L  +L                    +L   + +  A  +      
Sbjct: 91  DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEY 150

Query: 434 ------------PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM 481
                         NVL+  D    + DFGLAR +             +      + +  
Sbjct: 151 LASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDY-----YKKTTNGRLPVKWMA 205

Query: 482 EWVAR---YQHKGKGYSCGILLLEIMT-GKRPTDEMFADCL--SLHNFCEMALPESVMEL 535
                   Y H+   +S G+LL EI T G  P   +  + L   L     M  P +    
Sbjct: 206 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNE 265

Query: 536 VYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRI 568
           +Y  +           P  K    + +  L RI
Sbjct: 266 LYMMMRDCWHAVPSQRPTFK----QLVEDLDRI 294

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 29/189 (15%), Positives = 58/189 (30%), Gaps = 34/189 (17%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           L  EF+  G L   +   +   ++  AE +                        P N++ 
Sbjct: 103 LILEFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMC 160

Query: 440 DYDMTAYV--GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---Y 494
           +    + V   DFGLA  L  +    +           +  +    +   +  G     +
Sbjct: 161 ETKKASSVKIIDFGLATKLNPDEIVKV--------TTATAEFAAPEIVDREPVGFYTDMW 212

Query: 495 SCGILLLEIMTGKRP-TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPC 553
           + G+L   +++G  P   E   + L     C+    E     V       +    + EP 
Sbjct: 213 AIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPR 272

Query: 554 MKAKIRECL 562
            +  + + L
Sbjct: 273 KRLTVHDAL 281

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 52.4 bits (125), Expect = 4e-08
 Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 60/217 (27%)

Query: 389 DSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------- 433
           ++       +  E++   +L   +H       +     +++  D                
Sbjct: 79  ETPAGPLPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQNGIIHR 135

Query: 434 ---PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
              P+N+++       V DFG+AR +     +     + +AAV G+  Y    ++  Q +
Sbjct: 136 DVKPANIMISATNAVKVMDFGIARAIA----DSGNSVTQTAAVIGTAQY----LSPEQAR 187

Query: 491 GKGY-------SCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQG 543
           G          S G +L E++TG+ P    F               +S + + Y  + + 
Sbjct: 188 GDSVDARSDVYSLGCVLYEVLTGEPP----FTG-------------DSPVSVAYQHVRED 230

Query: 544 VDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNER 580
               +     + A +   +          L + P  R
Sbjct: 231 PIPPSARHEGLSADLDAVVLKA-------LAKNPENR 260

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 37/185 (20%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------P 434
            D   L  E                   L           +                   
Sbjct: 81  PDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKD 138

Query: 435 SNVLLDYD-MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG 493
            N+L+D +     + DFG    L   V     G    +          EW+  +++ G+ 
Sbjct: 139 ENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPP--------EWIRYHRYHGRS 190

Query: 494 ---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAED 550
              +S GILL +++ G  P +    + +    F    +      L+    L        D
Sbjct: 191 AAVWSLGILLYDMVCGDIPFEHD-EEIIRGQVFFRQRVSSECQHLI-RWCLA---LRPSD 245

Query: 551 EPCMK 555
            P  +
Sbjct: 246 RPTFE 250

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 27/190 (14%)

Query: 393 NDFKALAFEFMPNGSLESWLHPN----EATRR---LDLAEGLK-------IAVDI-PSNV 437
           +D      E+   G L   L       E   R    ++   L+       +  DI   N+
Sbjct: 77  HDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENL 136

Query: 438 LLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHKGKGY 494
           +LD D    + DFGL +         +   +      G+  Y    V     Y      +
Sbjct: 137 MLDKDGHIKITDFGLCKEG-------ISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWW 189

Query: 495 SCGILLLEIMTGKRP-TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP- 552
             G+++ E+M G+ P  ++       L    E+  P ++     S L   + KD +    
Sbjct: 190 GLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLG 249

Query: 553 CMKAKIRECL 562
              +  +E +
Sbjct: 250 GGPSDAKEVM 259

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 49.3 bits (117), Expect = 6e-07
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 33/135 (24%)

Query: 398 LAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLL 439
           + +EFM  G L   +   +   ++   E ++    +                  P N++ 
Sbjct: 100 MIYEFMSGGELFEKVA--DEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMF 157

Query: 440 DYDMTAYV--GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---Y 494
               +  +   DFGL   L    +  +          G+  +    VA  +  G     +
Sbjct: 158 TTKRSNELKLIDFGLTAHLDPKQSVKV--------TTGTAEFAAPEVAEGKPVGYYTDMW 209

Query: 495 SCGILLLEIMTGKRP 509
           S G+L   +++G  P
Sbjct: 210 SVGVLSYILLSGLSP 224

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY-NMEWVA--RY 487
           D+ P N+LLD +    + DFG A+++P               + G+  Y   E V+   Y
Sbjct: 129 DLKPENILLDKNGHIKITDFGFAKYVPDVTYT----------LCGTPDYIAPEVVSTKPY 178

Query: 488 QHKGKGYSCGILLLEIMTGKRP-TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDK 546
                 +S GIL+ E++ G  P  D             E+  P    E V   L + + +
Sbjct: 179 NKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITR 238

Query: 547 DAEDEP-CMKAKIRECL 562
           D       ++    +  
Sbjct: 239 DLSQRLGNLQNGTEDVK 255

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 8e-07
 Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 53/209 (25%)

Query: 398 LAFEFMPNGSLESWLH-----PNEATRRL--DLAEGLKIAVDIP-----------SNVLL 439
           L  + +  G L   +            RL   + + +K   D+                L
Sbjct: 84  LIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSL 143

Query: 440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGY---NMEWVARYQHKGKGYSC 496
           D D    + DFGL++             S  +   G+ GY    +     Y      +S 
Sbjct: 144 DEDSKIMISDFGLSKMEDPG--------SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSI 195

Query: 497 GILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKA 556
           G++   ++ G  P  +                 E+  +L    L    + D+     +  
Sbjct: 196 GVIAYILLCGYPPFYD-----------------ENDAKLFEQILKAEYEFDSPYWDDISD 238

Query: 557 KIRECLTSLGRIGIASLTETPNERMGVRE 585
             ++ +  L       + + P +R    +
Sbjct: 239 SAKDFIRHL-------MEKDPEKRFTCEQ 260

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 32/196 (16%)

Query: 393 NDFKALAFEFMPNGSLESWLHPN----EATRRLDLAEGLK----------IAVDI-PSNV 437
                L  +++  G L + L       E   ++ + E +           I  DI   N+
Sbjct: 101 ETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENI 160

Query: 438 LLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---- 493
           LLD +    + DFGL++    + T             G+I Y    + R    G      
Sbjct: 161 LLDSNGHVVLTDFGLSKEFVADETERAYDF------CGTIEYMAPDIVRGGDSGHDKAVD 214

Query: 494 -YSCGILLLEIMTGKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKD 547
            +S G+L+ E++TG  P          A+        E   P+ +  L    + + + KD
Sbjct: 215 WWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKD 274

Query: 548 AEDEP-CMKAKIRECL 562
            +    C      E  
Sbjct: 275 PKKRLGCGPRDADEIK 290

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (115), Expect = 9e-07
 Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 26/153 (16%)

Query: 434 PSNVLLD-----YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQ 488
           P N L+           YV DFG+ +F    VT           + G+  Y    ++   
Sbjct: 129 PDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARY----MSINT 184

Query: 489 HKGKGY-------SCGILLLEIMTGKRPTDEMFADCLS--LHNFCEMALPESVMEL---- 535
           H G+         + G + +  + G  P   + A           E      + EL    
Sbjct: 185 HLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGF 244

Query: 536 ---VYSRLLQGVDKDAEDEPCMKAKIRECLTSL 565
               Y  +    +   +  P     ++   + +
Sbjct: 245 PEEFYKYMHYARNLAFDATPDYD-YLQGLFSKV 276

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 66  RILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN-------- 117
           R+L          +   + +   +  L L  N L    P ++  L+ L+ L         
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 118 --PLATSLYSFQLNLAENNLTG-NIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLS 174
              +A      +L L  N L      + L +   L +LNL  N L         L   L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 175 SI 176
           S+
Sbjct: 118 SV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSL 187
           L+LA  +LT  +   LE L  +  L+LS N L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP----------------------- 37

Query: 188 PLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQG-RIPPFFGSFKGTI 246
              + +L   + L  S++ L +   +   N  + + LLL  N  Q         S    +
Sbjct: 38  --ALAALRCLEVLQASDNALENVDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 93

Query: 247 DLNLSHNNLS---GTIPKELETLPFLENL 272
            LNL  N+L    G   +  E LP + ++
Sbjct: 94  LLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 176 IDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI 235
           +  AH +   ++   +  L     LD S + L    P      +     +L  +      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP---ALAALRCLEVLQASDNALEN 57

Query: 236 PPFFGSFKGTIDLNLSHNNLSGT-IPKELETLPFLENLNLSFNNFEG 281
                +     +L L +N L  +   + L + P L  LNL  N+   
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 9e-04
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 248 LNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTN 291
           L+L+H +L  T+   LE L  + +L+LS N      P+++    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC 44

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 39/207 (18%)

Query: 393 NDFKALAFEFMPNGSLESWLHPNE-------ATRRLDLAEGLK-------IAVDI-PSNV 437
            D+  +  E +     + +   +              +   ++       I  D+ P N 
Sbjct: 75  GDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNF 134

Query: 438 L---LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKGY 494
           L          Y+ DFGLA+      T+       +  + G+  Y     +   H G   
Sbjct: 135 LMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARY----ASINTHLGIEQ 190

Query: 495 -------SCGILLLEIMTGKRPTDEMFADCLSLH---------NFCEMALPESVMELVYS 538
                  S G +L+    G  P   + A               +     L +       +
Sbjct: 191 SRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFAT 250

Query: 539 RLLQGVDKDAEDEPCMKAKIRECLTSL 565
            L        +D+P   + +R+   +L
Sbjct: 251 YLNFCRSLRFDDKPDY-SYLRQLFRNL 276

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 55/220 (25%)

Query: 392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------ 433
           G     +  E +  G L S +  +   +     E  +I   I                  
Sbjct: 80  GRKCLLIVMECLDGGELFSRIQ-DRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK 138

Query: 434 PSNVLLD---YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---Y 487
           P N+L      +    + DFG A+   ++ +              +  Y    V     Y
Sbjct: 139 PENLLYTSKRPNAILKLTDFGFAKETTSHNSLTT--------PCYTPYYVAPEVLGPEKY 190

Query: 488 QHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQG-VDK 546
                 +S G+++  ++ G  P                     ++   + +R+  G  + 
Sbjct: 191 DKSCDMWSLGVIMYILLCGYPPFYSNH--------------GLAISPGMKTRIRMGQYEF 236

Query: 547 DAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREM 586
              +   +  +++  + +L       L   P +RM + E 
Sbjct: 237 PNPEWSEVSEEVKMLIRNL-------LKTEPTQRMTITEF 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 15/261 (5%)

Query: 4   PQEIGNLFR--LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNL 61
           P   G L    +       S +   +  H SP  ++ ++ L ++    I   +L    + 
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSV---IEVSTLHGILSQ 69

Query: 62  STKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLAT 121
            +KL+ L   G + +  I   + K  NL++L    N    S          L   + L  
Sbjct: 70  CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL----NLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 122 SLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN 181
              S+  +  E ++   +    E +T L +     N     +         L  +D + +
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185

Query: 182 -NFNGSLPLEVGSLSNTQELDFSE-HMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF 239
                    E   L+  Q L  S  + +  E  + LG     + L + G +  G +    
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 245

Query: 240 GSFKGTIDLNLSHNNLSGTIP 260
            +      L ++ ++ +    
Sbjct: 246 EALP---HLQINCSHFTTIAR 263

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 8e-06
 Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 38/233 (16%)

Query: 380 LRATDGSSMDSGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------ 433
           LR    SS +     +  L  +++P        H + A + L +         +      
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 137

Query: 434 ------------PSNVLLDYD-MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYN 480
                       P N+LLD D     + DFG A+ L       ++G+ N + +       
Sbjct: 138 IHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL-------VRGEPNVSYICSRYYRA 190

Query: 481 MEWVARYQHKGKG---YSCGILLLEIMTGKRP-----TDEMFADCLSLHNFCEMALPESV 532
            E +            +S G +L E++ G+         +   + + +           +
Sbjct: 191 PELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREM 250

Query: 533 MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVRE 585
                      +      +        E +    R+    L  TP  R+   E
Sbjct: 251 NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRL----LEYTPTARLTPLE 299

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 9e-06
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 12/170 (7%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
           D+ P N+L++ +    + DFGLAR     V            V        E +   ++ 
Sbjct: 127 DLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTH------EVVTLWYRAPEILLGCKYY 180

Query: 491 GKG---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKD 547
                 +S G +  E++T +               F  +  P+ V+    + +       
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 240

Query: 548 AEDEPCMKAKIRECLTSLGRIGIAS-LTETPNERMGVREMVMEMNVIKEV 596
            +      +K+   L   GR  ++  L   PN+R+  +   +     ++V
Sbjct: 241 PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKA-ALAHPFFQDV 289

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 35/185 (18%)

Query: 398 LAFEFMPNGSLESWLHPNEATRR-------LDLAEGLK-------IAVDI-PSNVLLDYD 442
           L  E +  G L  +L   E+            +  G+           D+ P N++L   
Sbjct: 90  LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDR 149

Query: 443 MTA----YVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---YS 495
                   + DFGLA  +                ++G+  +    +  Y+  G     +S
Sbjct: 150 NVPKPRIKIIDFGLAHKIDFGNEFKN--------IFGTPEFVAPEIVNYEPLGLEADMWS 201

Query: 496 CGILLLEIMTGKRP-----TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAED 550
            G++   +++G  P       E  A+  +++   E     +   L    + + + KD + 
Sbjct: 202 IGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKK 261

Query: 551 EPCMK 555
              ++
Sbjct: 262 RMTIQ 266

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 11/166 (6%)

Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG 493
           P N+L++ +    + DFGLAR     V            +        + +   +     
Sbjct: 128 PQNLLINREGELKIADFGLARAFGIPVRKYTH------EIVTLWYRAPDVLMGSKKYSTT 181

Query: 494 ---YSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAED 550
              +S G +  E++ G      +      +  F  +  P S      + L +        
Sbjct: 182 IDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVY 241

Query: 551 EPCMKAKIRECLTSLGRIGIAS-LTETPNERMGVREMVMEMNVIKE 595
           EP       + L   G   ++  L   PN+R+  ++  +E    KE
Sbjct: 242 EPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQ-ALEHAYFKE 286

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 128 LNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSL 187
           LN++ N L   +P     L  L     S NHL   +P+   L   L  +   +N      
Sbjct: 289 LNVSNNKLI-ELPALPPRLERL---IASFNHL-AEVPE---LPQNLKQLHVEYNPLR-EF 339

Query: 188 PLEVGSLSN 196
           P    S+ +
Sbjct: 340 PDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 13/85 (15%)

Query: 30  HLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNL 89
                  L  L++ +N L  + P           +L  L A  N    ++P       NL
Sbjct: 279 LCDLPPSLEELNVSNNKLIEL-PALP-------PRLERLIASFNHL-AEVPELPQ---NL 326

Query: 90  IQLGLDRNCLAGSIPFSIGKLQNLQ 114
            QL ++ N L    P     +++L+
Sbjct: 327 KQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 11/88 (12%)

Query: 73  NQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQ-------NLQKLNPLATSLYS 125
           N  + +I +      +L +L +  N L   +P    +L+       +L ++  L  +L  
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQ 328

Query: 126 FQLNLAENNLTGNIPESLENLTSLQILN 153
             L++  N L    P+  E++  L++ +
Sbjct: 329 --LHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 133 NNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVG 192
           N  +  I    +   SL+ LN+S N L   +P    L   L  +  + N+    +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL-IELP---ALPPRLERLIASFNHLA-EVPELPQ 324

Query: 193 SLSNTQELDFSEHMLSD--EIPITLGN 217
           +L   ++L    + L +  +IP ++ +
Sbjct: 325 NL---KQLHVEYNPLREFPDIPESVED 348

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 24/141 (17%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
           D+ P N+L+D      V DFG A+ +                   ++    E +A     
Sbjct: 166 DLKPENLLIDQQGYIQVTDFGFAKRVKGR--------------TWTLCGTPEALAPEIIL 211

Query: 491 GKGY-------SCGILLLEIMTGKRP-TDEMFADCLSLHNFCEMALPESVMELVYSRLLQ 542
            KGY       + G+L+ E+  G  P   +            ++  P      +   L  
Sbjct: 212 SKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRN 271

Query: 543 GVDKDAED-EPCMKAKIRECL 562
            +  D       +K  + +  
Sbjct: 272 LLQVDLTKRFGNLKNGVNDIK 292

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 26/167 (15%)

Query: 432 DI-PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHK 490
           D+ P N+L++ +    + +FGLAR            +  SA V        + +   +  
Sbjct: 126 DLKPQNLLINRNGELKLANFGLARAFGIP------VRCYSAEVVTLWYRPPDVLFGAKLY 179

Query: 491 GK---GYSCGILLLEIMTGKRP-------TDEMFADCLSLHNFCEMALPESVMELVYSR- 539
                 +S G +  E+    RP        D++      L    E   P       Y   
Sbjct: 180 STSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPY 239

Query: 540 -LLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVRE 585
            +           P + A  R+ L +L       L   P +R+   E
Sbjct: 240 PMYPATTSLVNVVPKLNATGRDLLQNL-------LKCNPVQRISAEE 279

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 35/214 (16%), Positives = 62/214 (28%), Gaps = 38/214 (17%)

Query: 398 LAFEFMPNGSLESW------LHPNEATRR-LDLAEGLKIA-------VDI-PSNVLLDYD 442
           L F+FM              L P+      L   +GL+          D+ P+N+LLD +
Sbjct: 77  LVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDEN 136

Query: 443 MTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG---YSCGIL 499
               + DFGLA+   +              V        E +   +  G G   ++ G +
Sbjct: 137 GVLKLADFGLAKSFGSPNRAYTHQ------VVTRWYRAPELLFGARMYGVGVDMWAVGCI 190

Query: 500 LLEIMTGKRP------TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDE-P 552
           L E++            D++     +L    E   P+      Y                
Sbjct: 191 LAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFS 250

Query: 553 CMKAKIRECLTSLGRIGIASLTETPNERMGVREM 586
                + + +  L           P  R+   + 
Sbjct: 251 AAGDDLLDLIQGL-------FLFNPCARITATQA 277

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 128 LNLAENNLTGN----IPESLENLTSLQILNLSCNHLGGSIPKP-----SGLFSTLSSIDF 178
           L LA+ +++ +    +  +L    SL+ L+LS N LG +               L  +  
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 179 AHNNFNGSLPLEVGSL 194
               ++  +   + +L
Sbjct: 434 YDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 88  NLIQLGLDRNCLAGS-IPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTG----NIPES 142
           ++  L +    L+ +     +  LQ  Q +             L +  LT     +I  +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVR------------LDDCGLTEARCKDISSA 50

Query: 143 LENLTSLQILNLSCNHLGGSIPK--PSGLFSTLSSI 176
           L    +L  LNL  N LG         GL +    I
Sbjct: 51  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 28  PSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF 87
                P S L  L L   ++      SL +    +  LR LD   N         + +  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 88  -----NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP 118
                 L QL L     +  +      LQ L+K  P
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR---LQALEKDKP 454

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 10/95 (10%)

Query: 148 SLQILNLSCNHLGGS-IPKPSGLFSTLSSIDFAHNNFNG----SLPLEVGSLSNTQELDF 202
            +Q L++ C  L  +   +   L      +              +   +       EL+ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 203 SEHMLSDEIPITLG-----NRSKFEHLLLGGNMFQ 232
             + L D     +         K + L L      
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 41/224 (18%)

Query: 398 LAFEFMPNGSLESWLH------PNEATRRL--DLAEGLK-------IAVDI-PSNVLLDY 441
           L FE +                P E  + +   L  GL        +  D+ P N+L+  
Sbjct: 92  LVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTS 151

Query: 442 DMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVAR---YQHKGKGYSCGI 498
                + DFGLAR     +            V  ++ Y    V     Y      +S G 
Sbjct: 152 SGQIKLADFGLARIYSFQMALTS--------VVVTLWYRAPEVLLQSSYATPVDLWSVGC 203

Query: 499 LLLEIMTGKRP------TDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEP 552
           +  E+   K         D++      +    E   P  V     +   +      +   
Sbjct: 204 IFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVT 263

Query: 553 CMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV 596
            +    ++ L          LT  P +R+      +     +++
Sbjct: 264 DIDELGKDLLLKC-------LTFNPAKRISAYS-ALSHPYFQDL 299

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 110 LQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGG--SIPKPS 167
           L+ L+    L        LN   +++   +    EN+  L  LNLS N L     +    
Sbjct: 29  LKGLRSDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV 87

Query: 168 GLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLL 225
                L  ++ + N       L+       +EL    + LSD         S      
Sbjct: 88  QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 16/147 (10%)

Query: 138 NIPESLENLTSLQILNLSCNHLGGSIP--KPSGLFSTLSSIDFAHNNFNGSLPLEVGSLS 195
            +   +          L    L  S P      +   L+      ++   +L +   ++ 
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR-SDPDLVAQNIDVVLNRR----SSMAATLRIIEENIP 65

Query: 196 NTQELDFSEHMLSD--EIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHN 253
               L+ S + L    ++   +      + L L GN  +              +L L  N
Sbjct: 66  ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125

Query: 254 NLSGTIPKE-------LETLPFLENLN 273
           +LS T   +        E  P L  L+
Sbjct: 126 SLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 26/147 (17%), Positives = 39/147 (26%), Gaps = 1/147 (0%)

Query: 166 PSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLL 225
           P  +    + +    N         +            +      I       +     L
Sbjct: 24  PRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83

Query: 226 LGGNMFQGRIPP-FFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLP 284
             G      I    F        LNL  N +S  +P   E L  L +LNL+ N F     
Sbjct: 84  QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

Query: 285 SMSVFTNTSVISIVGNGKLCGGVPELR 311
                      S+ G    CG   ++R
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSKVR 170

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 3/155 (1%)

Query: 434 PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNMEWVARYQHKGKG 493
           PSN+LL+      + DFGLAR    +  +        A  W      M     Y      
Sbjct: 137 PSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDI 196

Query: 494 YSCGILLLEIMTGKRP-TDEMFADCLSLH-NFCEMALPESVMELVYSRLLQGVDKDAEDE 551
           +S G +L E+++ +     + + D L+           E +  ++  +    +       
Sbjct: 197 WSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKN 256

Query: 552 PCMKAKIRECLTSLGRIGIAS-LTETPNERMGVRE 585
                ++     S     +   LT  P++R+ V +
Sbjct: 257 KVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQ 291

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 39/238 (16%)

Query: 80  PAGIPKYF------NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAEN 133
           P  I   F      N I++   ++ +  ++  +   L  +  L+                
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLS------------AFGT 51

Query: 134 NLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGS 193
            +T    E ++ L +L  L L  N +    P  +    T   +         ++      
Sbjct: 52  GVTT--IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSI 109

Query: 194 LSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRI--------------PPFF 239
            +          +        L       + +   +   G                    
Sbjct: 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL 169

Query: 240 GSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISI 297
            +      L    N +S   P  L +LP L  ++L  N     +  ++  +N  ++++
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 202 FSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK 261
            S           L N SK   L    N      P    S    I+++L +N +S   P 
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP- 212

Query: 262 ELETLPFLENLNLS 275
            L     L  + L+
Sbjct: 213 -LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 39/220 (17%), Positives = 62/220 (28%), Gaps = 14/220 (6%)

Query: 9   NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRIL 68
            L     +  G S V   +    +    +T LS F   +      +++    L   L  L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-----TIEGVQYL-NNLIGL 68

Query: 69  DAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP--LATSLYSF 126
           +   NQ     P         ++L  +      +I                   T L   
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 127 QLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGS 186
                       I           +  LS  +   S   P    S L+++    N  +  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 187 LPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLL 226
            PL   SL N  E+    + +SD  P  L N S    + L
Sbjct: 189 SPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 27/204 (13%)

Query: 88  NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLT 147
             ++  L +  +  ++  +   L  +  L                  +  +I + +E L 
Sbjct: 19  EKMKTVLGKTNVTDTVSQT--DLDQVTTLQ------------ADRLGIK-SI-DGVEYLN 62

Query: 148 SLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHML 207
           +L  +N S N L           + L ++    +    +  +   +            + 
Sbjct: 63  NLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 114

Query: 208 SDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLP 267
           +++I      ++      L  +                  LN S N ++   P  L  L 
Sbjct: 115 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLT 172

Query: 268 FLENLNLSFNNFEGQLPSMSVFTN 291
            LE L++S N     +  ++  TN
Sbjct: 173 TLERLDISSNKVSD-ISVLAKLTN 195

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 79  IPAGIPKYF------NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAE 132
           +P  I + F        I+  L +  +  ++  +  +L ++ ++                
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQII------------ANN 55

Query: 133 NNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVG 192
           +++       ++ L ++  L L+ N L    P      + L ++ +   + N    L   
Sbjct: 56  SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSL 108

Query: 193 SLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSH 252
                 +    EH    +I   L +  + E L LG N           +   T+      
Sbjct: 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS----L 163

Query: 253 NNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISI 297
            +   +    L  L  L+NL LS N+    L +++   N  V+ +
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLEL 207

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 94  LDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL-----ENLTS 148
           L+   L+     ++    +  +   L T      L L  N +  +   +L     E +  
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQT------LRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 149 LQILNLSCNHLGGSIPKPSGLFSTLSS 175
           L  L L+ N           +    S+
Sbjct: 304 LLFLELNGNRFSEEDDVVDEIREVFST 330

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	614
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.94
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.94
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.94
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.94
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.93
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.93
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.93
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.93
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.93
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.93
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.92
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.92
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.92
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.92
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.92
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.91
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.91
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.91
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.91
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.91
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.91
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.9
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.9
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.9
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.9
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.9
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.89
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.89
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.89
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.89
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.89
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.88
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.87
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.87
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.87
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.86
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.85
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.83
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.83
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.83
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.83
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.83
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.82
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.73
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.73
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.63
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.7e-34  Score=287.43  Aligned_cols=256  Identities=31%  Similarity=0.506  Sum_probs=231.2

Q ss_pred             CCCCcEEecccccCcc--cCCcChhhhccccccccEEEccC-CcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCC
Q 046036           34 TSKLTYLSLFSNNLHG--IIPPSLDSFTNLSTKLRILDAGG-NQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKL  110 (614)
Q Consensus        34 l~~L~~L~L~~N~l~~--~~p~~~~~~~~l~~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  110 (614)
                      ..+++.|+|++|.++|  .+|..   +.+++ +|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~---l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSS---LANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGG---GGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             cEEEEEEECCCCCCCCCCCCChH---HhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccch
Confidence            3468999999999987  47777   77787 899999986 88998999999999999999999999999888889888


Q ss_pred             CCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCC-CEEEcCCCCCccCCcc
Q 046036          111 QNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTL-SSIDFAHNNFNGSLPL  189 (614)
Q Consensus       111 ~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~~~  189 (614)
                      .+|+.++            +++|.+.+.+|..|.++++|+.+++++|.+.+.+|..+..+..+ +.+++++|++++..|.
T Consensus       125 ~~L~~l~------------l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~  192 (313)
T d1ogqa_         125 KTLVTLD------------FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             TTCCEEE------------CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred             hhhcccc------------cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccc
Confidence            8888887            99999999999999999999999999999998999888888776 8899999999999998


Q ss_pred             cccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCC
Q 046036          190 EVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFL  269 (614)
Q Consensus       190 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  269 (614)
                      .+..+..+ .+++++|.+.+.+|..+..+++|+.+++++|.+.+.+| .++.+++|+.|+|++|+++|.+|..+..+++|
T Consensus       193 ~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L  270 (313)
T d1ogqa_         193 TFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             GGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCC
Confidence            88887655 69999999999999999999999999999999987655 68889999999999999999999999999999


Q ss_pred             CEEECcCCcCcccCCCccccCCCceEEEecCCCcccCC
Q 046036          270 ENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLCGGV  307 (614)
Q Consensus       270 ~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~  307 (614)
                      +.|+|++|+|+|.+|....+.+++.+++.||+.+||.+
T Consensus       271 ~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             CEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCC
Confidence            99999999999999998888999999999999999964

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.9e-33  Score=279.18  Aligned_cols=253  Identities=29%  Similarity=0.456  Sum_probs=233.4

Q ss_pred             CCCCeeeecCCcccc--cCCcCCCCCCCCcEEeccc-ccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCC
Q 046036           11 FRLQNLNFGNSTVQG--EIPSHLSPTSKLTYLSLFS-NNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYF   87 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~   87 (614)
                      .+++.|+|++|.+++  .+|..++++++|++|+|++ |+++|.+|..   +.+++ +|++|+|++|++.+..+..+..+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~---i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLT-QLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCT-TCSEEEEEEECCEEECCGGGGGCT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc---ccccc-ccchhhhccccccccccccccchh
Confidence            368999999999997  5899999999999999997 8999999998   77887 999999999999999999999999


Q ss_pred             CCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCC-CeeecccccCCCCCCCC
Q 046036           88 NLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSL-QILNLSCNHLGGSIPKP  166 (614)
Q Consensus        88 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~p~~  166 (614)
                      +|+++++++|.+.+.+|..++++++|+.++            +++|.+++.+|..+..+.++ +.+++++|++++..|..
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~------------l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGIT------------FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEE------------CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             hhcccccccccccccCchhhccCcccceee------------cccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999887            99999999999999999887 89999999999999988


Q ss_pred             CCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccc
Q 046036          167 SGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTI  246 (614)
Q Consensus       167 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  246 (614)
                      +..+.. ..+++++|.+.+.+|..+..+++++.+++++|.+++.++ .++.+++|+.|+|++|+++|.+|++|+++++|+
T Consensus       194 ~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~  271 (313)
T d1ogqa_         194 FANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             GGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCC
Confidence            877754 479999999999999999999999999999999987655 688899999999999999999999999999999


Q ss_pred             eEEccCCcCcccCCcccCCCCCCCEEECcCCc-Cccc
Q 046036          247 DLNLSHNNLSGTIPKELETLPFLENLNLSFNN-FEGQ  282 (614)
Q Consensus       247 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~  282 (614)
                      +|+|++|+|+|.+|. +..+++|+.+++++|+ ++|.
T Consensus       272 ~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         272 SLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             EEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            999999999999985 6789999999999998 4554

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.8e-30  Score=249.81  Aligned_cols=174  Identities=22%  Similarity=0.332  Sum_probs=123.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++|||||++|+|.++++..  ...++|..+.+|+.|+                  |+|||+|.++.+||+|||+|+
T Consensus        75 ~~~~~lv~Ey~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~  152 (276)
T d1uwha_          75 APQLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT  152 (276)
T ss_dssp             SSSCEEEEECCCEEEHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSC
T ss_pred             ccEEEEEEecCCCCCHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEcccccee
Confidence            45679999999999999999754  2359999999998888                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      ........     .......||+.|+| |.     ...++.++|||||||++|||+||+.||.+.....           
T Consensus       153 ~~~~~~~~-----~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~-----------  216 (276)
T d1uwha_         153 VKSRWSGS-----HQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-----------  216 (276)
T ss_dssp             C-----------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-----------
T ss_pred             eccccCCc-----ccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHH-----------
Confidence            77643321     23445789999987 86     2357899999999999999999999997532211           


Q ss_pred             CCChHHHHHHHHhcCc-CCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGV-DKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                            .+...+.... .+....   ..   .++...+.+++.+||+.+|++||||+||+++|+.+++.
T Consensus       217 ------~~~~~~~~~~~~p~~~~---~~---~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         217 ------QIIFMVGRGYLSPDLSK---VR---SNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS  273 (276)
T ss_dssp             ------HHHHHHHHTSCCCCGGG---SC---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHhcCCCCCcchh---cc---ccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence                  1111111111 000000   00   11223445677899999999999999999999988764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=6e-27  Score=233.53  Aligned_cols=271  Identities=20%  Similarity=0.245  Sum_probs=182.7

Q ss_pred             CCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCE
Q 046036           12 RLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQ   91 (614)
Q Consensus        12 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~   91 (614)
                      .++.+|=++++++ .+|..+.  ++|++|+|++|+|+...+.+   |.+++ +|++|++++|.+....|..|.++++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~---f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGD---FKNLK-NLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTT---TTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhH---hhccc-cccccccccccccccchhhhhCCCccCE
Confidence            4566676777777 5565553  46777777777777544445   56665 7777777777777666677777777777


Q ss_pred             EeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCC--CCCCCCCCC
Q 046036           92 LGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLG--GSIPKPSGL  169 (614)
Q Consensus        92 L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~  169 (614)
                      |++++|+++ .+|..+  ...+..|+            +++|.+.+..+..+.....+..++...|...  ...+..+..
T Consensus        84 L~l~~n~l~-~l~~~~--~~~l~~L~------------~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~  148 (305)
T d1xkua_          84 LYLSKNQLK-ELPEKM--PKTLQELR------------VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  148 (305)
T ss_dssp             EECCSSCCS-BCCSSC--CTTCCEEE------------CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             ecccCCccC-cCccch--hhhhhhhh------------ccccchhhhhhhhhhccccccccccccccccccCCCcccccc
Confidence            777777777 344332  23444444            7777777666666666777777777766543  223445566


Q ss_pred             CCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEE
Q 046036          170 FSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLN  249 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  249 (614)
                      +++|+.+++++|.++ .+|..+  +++|+.|++++|.+++..+..|..++.++.|++++|.+++..+.++.++++|++|+
T Consensus       149 l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            677777777777776 344332  56777777777777777777777777777777777777777677777777777777


Q ss_pred             ccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCC-------ccccCCCceEEEecCCCcccCCC
Q 046036          250 LSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPS-------MSVFTNTSVISIVGNGKLCGGVP  308 (614)
Q Consensus       250 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-------~~~~~~l~~~~~~~N~~~c~~~~  308 (614)
                      |++|+|+ .+|..|..+++|+.|++++|+|+.....       .....++..+++.|||+.+..++
T Consensus       226 L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         226 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             ccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCC
Confidence            7777777 4566777777777777777777754221       22345677788888887776554

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-28  Score=237.87  Aligned_cols=173  Identities=21%  Similarity=0.265  Sum_probs=117.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.++++..  ...++|..+.+|+.|+                  |+|||+|+++.+||+|||
T Consensus        69 ~~~~~~~~lv~E~~~~g~L~~~l~~~--~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFG  146 (263)
T d1sm2a_          69 CLEQAPICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFG  146 (263)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC
T ss_pred             eccCCceEEEEEecCCCcHHHHhhcc--ccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccc
Confidence            44567789999999999999998764  3468999999988888                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +++.......      .......||+.|+| |.  ...++.|+|||||||++|||+|+..|+.....             
T Consensus       147 la~~~~~~~~------~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~-------------  207 (263)
T d1sm2a_         147 MTRFVLDDQY------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS-------------  207 (263)
T ss_dssp             ------------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC-------------
T ss_pred             hheeccCCCc------eeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC-------------
Confidence            9987765432      22344679999977 87  67899999999999999999996555432111             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                         ..+++...........|.          .+...+.+++..||+.+|++||||+||+++|+++++.
T Consensus       208 ---~~~~~~~i~~~~~~~~p~----------~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         208 ---NSEVVEDISTGFRLYKPR----------LASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             ---HHHHHHHHHHTCCCCCCT----------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhcCCCCCcc----------ccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence               111111111111111111          1122455788899999999999999999999998764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.4e-26  Score=229.04  Aligned_cols=254  Identities=20%  Similarity=0.258  Sum_probs=219.2

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      +||+.+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....|..   |.+++ +|++|++++|+++ .+|.
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~---f~~l~-~L~~L~l~~n~l~-~l~~   96 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA---FAPLV-KLERLYLSKNQLK-ELPE   96 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCT-TCCEEECCSSCCS-BCCS
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh---hhCCC-ccCEecccCCccC-cCcc
Confidence            4787773  78999999999999777778999999999999999999887888   77887 9999999999998 5665


Q ss_pred             CCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccc--cccchhhhccCCCCeeecccccC
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLT--GNIPESLENLTSLQILNLSCNHL  159 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l  159 (614)
                      .+  ...|..|++++|.+.+..+..+.....+..++            ...|...  ...+..|..+++|+++++++|.+
T Consensus        97 ~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~------------~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          97 KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVE------------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE------------CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ch--hhhhhhhhccccchhhhhhhhhhccccccccc------------cccccccccCCCccccccccccCccccccCCc
Confidence            54  35899999999999977776777777776665            7666543  44566789999999999999999


Q ss_pred             CCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccc
Q 046036          160 GGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFF  239 (614)
Q Consensus       160 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~  239 (614)
                      . .+|..  .+++|+.|++++|.+++..+..|..++.++.|++++|.+++..+..+..+++|++|+|++|.|+ .+|.+|
T Consensus       163 ~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l  238 (305)
T d1xkua_         163 T-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  238 (305)
T ss_dssp             C-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             c-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccc
Confidence            8 55554  3689999999999999999999999999999999999999998999999999999999999998 678899


Q ss_pred             cCCCccceEEccCCcCcccCCccc------CCCCCCCEEECcCCcCc
Q 046036          240 GSFKGTIDLNLSHNNLSGTIPKEL------ETLPFLENLNLSFNNFE  280 (614)
Q Consensus       240 ~~l~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~ls~N~l~  280 (614)
                      ..+++|+.|+|++|+|+......|      ..+++|+.|++++|+++
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999999999999996544443      45788999999999986

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.5e-28  Score=240.59  Aligned_cols=175  Identities=22%  Similarity=0.385  Sum_probs=117.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.+++...  ...++|.++.+|+.|+                  |+|||+|.++.+||+|||
T Consensus        96 ~~~~~~~~iv~Ey~~~g~L~~~~~~~--~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG  173 (299)
T d1jpaa_          96 VTKSTPVMIITEFMENGSLDSFLRQN--DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFG  173 (299)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHTT--TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             EeeCCEEEEEEEecCCCcceeeeccc--cCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcc
Confidence            34567789999999999999998754  3369999999998888                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +|+.+.......  .........||+.|+| |.  ...++.++|||||||++|||+| |+.||.+...            
T Consensus       174 la~~~~~~~~~~--~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~------------  239 (299)
T d1jpaa_         174 LSRFLEDDTSDP--TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN------------  239 (299)
T ss_dssp             ------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH------------
T ss_pred             cceEccCCCCcc--eeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCH------------
Confidence            999876543210  0112233568999977 77  7789999999999999999998 8999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                           .+++.. +.......+..         ++...+.+++..||+.+|++||||+||++.|+++.+
T Consensus       240 -----~~~~~~-i~~~~~~~~~~---------~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         240 -----QDVINA-IEQDYRLPPPM---------DCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             -----HHHHHH-HHTTCCCCCCT---------TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             -----HHHHHH-HHcCCCCCCCc---------cchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence                 111111 11111111110         122344567889999999999999999999987754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-27  Score=233.23  Aligned_cols=251  Identities=20%  Similarity=0.145  Sum_probs=196.5

Q ss_pred             cEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCccc
Q 046036           38 TYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLN  117 (614)
Q Consensus        38 ~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  117 (614)
                      ..++.++++++ .+|..+      ++++++|+|++|+|+...+..|.++++|++|++++|++....+..+..+..+..+.
T Consensus        14 ~~v~c~~~~L~-~iP~~i------p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~   86 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGI------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (284)
T ss_dssp             CEEECCSSCCS-SCCTTC------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCCCCCC-ccCCCC------CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccc
Confidence            34566677777 556542      23678888888888766666788888888888888888877777777777777664


Q ss_pred             ccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCC
Q 046036          118 PLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNT  197 (614)
Q Consensus       118 l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  197 (614)
                                 ....|.++...+..|.++++|++|++++|.+....+..+....+|+.+++++|.|++..+..|..+++|
T Consensus        87 -----------~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L  155 (284)
T d1ozna_          87 -----------LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL  155 (284)
T ss_dssp             -----------CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             -----------cccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch
Confidence                       135666776777888888899999999988886667777788889999999999987777778888899


Q ss_pred             ceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCC
Q 046036          198 QELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFN  277 (614)
Q Consensus       198 ~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N  277 (614)
                      +.|++++|.+++..+..|.++++|+.+++++|++++..|..|..+++|++|++++|++.+..+..|..+++|+.|++++|
T Consensus       156 ~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            99999999998888888889999999999999999888999999999999999999999888889999999999999999


Q ss_pred             cCcccCCCccccCCCceEEEecCCCcccC
Q 046036          278 NFEGQLPSMSVFTNTSVISIVGNGKLCGG  306 (614)
Q Consensus       278 ~l~~~~p~~~~~~~l~~~~~~~N~~~c~~  306 (614)
                      ++.+..+..+....+.......+...|..
T Consensus       236 ~l~C~C~~~~l~~~l~~~~~~~~~~~C~~  264 (284)
T d1ozna_         236 PWVCDCRARPLWAWLQKFRGSSSEVPCSL  264 (284)
T ss_dssp             CEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred             CCCCCccchHHHHHHHhCcCCCCceEeCC
Confidence            99877654322222333333445555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-27  Score=233.30  Aligned_cols=251  Identities=18%  Similarity=0.161  Sum_probs=181.3

Q ss_pred             CeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEe
Q 046036           14 QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLG   93 (614)
Q Consensus        14 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~   93 (614)
                      ..++.++++++ .+|..+.  +++++|+|++|+|+...+..   |.+++ +|++|++++|++....+..+..+..++.+.
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~---f~~l~-~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~   86 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAAS---FRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTT---TTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHH---hhccc-cccccccccccccccccccccccccccccc
Confidence            34566777777 5666554  46788888888887655555   66666 788888888888777777777777888776


Q ss_pred             cc-CCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036           94 LD-RNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus        94 L~-~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                      .. .|.++...+..|.++++|++|+            +++|.+....+..+..+++|+.+++++|++++..+..+..+++
T Consensus        87 ~~~~~~~~~l~~~~~~~l~~L~~L~------------l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~  154 (284)
T d1ozna_          87 LSDNAQLRSVDPATFHGLGRLHTLH------------LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (284)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEE------------CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cccccccccccchhhcccccCCEEe------------cCCcccccccccccchhcccchhhhccccccccChhHhccccc
Confidence            54 5566666677777788877776            8888887666777777888888888888887666667777788


Q ss_pred             CCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccC
Q 046036          173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSH  252 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  252 (614)
                      |+.|++++|+|++..+..|.++++|+.+++++|++++..|..|..+++|++|++++|.+.+..+..|+.+++|++|+|++
T Consensus       155 L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            88888888888877777778888888888888888877788888888888888888888877777788888888888888


Q ss_pred             CcCcccCCcccCCCCCCCEEECcCCcCcccCC
Q 046036          253 NNLSGTIPKELETLPFLENLNLSFNNFEGQLP  284 (614)
Q Consensus       253 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p  284 (614)
                      |++...-+.. .-...++.+....+++.+..|
T Consensus       235 N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p  265 (284)
T d1ozna_         235 NPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP  265 (284)
T ss_dssp             SCEECSGGGH-HHHHHHHHCCSEECCCBEEES
T ss_pred             CCCCCCccch-HHHHHHHhCcCCCCceEeCCc
Confidence            8877432210 011223444455556655444

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.3e-28  Score=235.15  Aligned_cols=168  Identities=24%  Similarity=0.327  Sum_probs=124.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++|||||++|+|.++++... ...++|..+++|+.++                  |+|||+|+++.+||+|||+|+
T Consensus        79 ~~~~~iv~Ey~~~g~L~~~~~~~~-~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~  157 (272)
T d1qpca_          79 QEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (272)
T ss_dssp             SSSCEEEEECCTTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cCCeEEEEEeCCCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceE
Confidence            455789999999999999887542 3459999999999888                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .+.....      .......||+.|+| |.  ...++.++|||||||++|||+||..|+......               
T Consensus       158 ~~~~~~~------~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~---------------  216 (272)
T d1qpca_         158 LIEDNEY------TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN---------------  216 (272)
T ss_dssp             ECSSSCE------ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH---------------
T ss_pred             EccCCcc------ccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCH---------------
Confidence            8765432      23345679999977 87  678999999999999999999976665432111               


Q ss_pred             hHHHHHHHHhcCcC-CCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          532 VMELVYSRLLQGVD-KDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       532 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                       .+.... +..... ..|.          .....+.+++..||+.+|++||||+||+++|+.+-
T Consensus       217 -~~~~~~-i~~~~~~~~p~----------~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~f  268 (272)
T d1qpca_         217 -PEVIQN-LERGYRMVRPD----------NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF  268 (272)
T ss_dssp             -HHHHHH-HHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -HHHHHH-HHhcCCCCCcc----------cChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhh
Confidence             111111 111111 1111          11123456778999999999999999999998764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-27  Score=233.97  Aligned_cols=174  Identities=19%  Similarity=0.266  Sum_probs=128.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++|||||++|+|.+++...  ...++|..+.+|+.|+                  |+|||++.++.+||+|||+|+
T Consensus        80 ~~~~~lvmE~~~~g~L~~~l~~~--~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~  157 (285)
T d1u59a_          80 AEALMLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSK  157 (285)
T ss_dssp             SSSEEEEEECCTTEEHHHHHTTC--TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             cCeEEEEEEeCCCCcHHHHhhcc--ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhh
Confidence            34579999999999999998653  2469999999998888                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .+......    ........||+.|+| |.  ...++.++|||||||++|||+| |+.||.+....              
T Consensus       158 ~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~--------------  219 (285)
T d1u59a_         158 ALGADDSY----YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--------------  219 (285)
T ss_dssp             ECTTCSCE----ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--------------
T ss_pred             cccccccc----cccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHH--------------
Confidence            87654321    122334678999977 87  6789999999999999999998 89999753211              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                         ++.. .+........+  +       .+...+.+++..||+.+|++||||.+|++.|+.+...+..
T Consensus       220 ---~~~~-~i~~~~~~~~p--~-------~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~~~  275 (285)
T d1u59a_         220 ---EVMA-FIEQGKRMECP--P-------ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS  275 (285)
T ss_dssp             ---HHHH-HHHTTCCCCCC--T-------TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred             ---HHHH-HHHcCCCCCCC--C-------cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhhh
Confidence               1111 11111111110  1       1112345678899999999999999999999877655433

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-27  Score=237.16  Aligned_cols=189  Identities=16%  Similarity=0.128  Sum_probs=131.0

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------------CCceeeCCCCCeee
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------------PSNVLLDYDMTAYV  447 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------------~~NILld~~~~~kl  447 (614)
                      ...++|||||++|+|.++|+..    .++|..+.+++.++                          |+|||+|+++.+||
T Consensus        74 ~~~~lv~Ey~~~g~L~~~l~~~----~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl  149 (303)
T d1vjya_          74 TQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  149 (303)
T ss_dssp             EEEEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEE
T ss_pred             eEEEEEEecccCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEE
Confidence            3578999999999999999853    48999988887776                          99999999999999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc-cC-------CCCccCceeehhHHHHHHHhCCCCCCcccccCc
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VA-------RYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL  518 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~-------~~~~k~DVySfGvvllElltG~~p~~~~~~~~~  518 (614)
                      +|||+++........   .........||++|+| |+ ..       .++.|+|||||||++|||+||..|+........
T Consensus       150 ~DFGl~~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~  226 (303)
T d1vjya_         150 ADLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL  226 (303)
T ss_dssp             CCCTTCEEEETTTTE---ECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCC
T ss_pred             EecCccccccCCCcc---eeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCccccccc
Confidence            999999987554321   0122345789999977 87 22       367899999999999999999988754322211


Q ss_pred             hHHHHHHhhC-CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          519 SLHNFCEMAL-PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       519 ~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                      ...   .... .....+..+....+...+....+..    ..+....+.+++.+||+.+|++||||.||+++|+++.++
T Consensus       227 ~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         227 PYY---DLVPSDPSVEEMRKVVCEQKLRPNIPNRWQ----SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             TTT---TTSCSSCCHHHHHHHHTTSCCCCCCCGGGG----GCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             chh---hcccccchHHHHHHHHhccccCCCCCcccC----ChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            100   0000 1112223333333333322222211    124556677899999999999999999999999998865

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-27  Score=236.25  Aligned_cols=174  Identities=21%  Similarity=0.245  Sum_probs=121.4

Q ss_pred             CCCceeEEecccCCCchhhhccCCCC-------------CcccCHHHHHHHHhhC------------------CCceeeC
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEA-------------TRRLDLAEGLKIAVDI------------------PSNVLLD  440 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~-------------~~~l~~~~~~~ia~~i------------------~~NILld  440 (614)
                      .++..++|||||++|+|.++|+....             ...++|..+..++.|+                  |+|||+|
T Consensus        89 ~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~  168 (299)
T d1ywna1          89 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS  168 (299)
T ss_dssp             TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC
T ss_pred             CCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeEC
Confidence            34568999999999999999975421             2358999999988887                  9999999


Q ss_pred             CCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCC-CCCCccccc
Q 046036          441 YDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGK-RPTDEMFAD  516 (614)
Q Consensus       441 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~-~p~~~~~~~  516 (614)
                      +++.+||+|||+|+........     ...+...||+.|+| |.  ...++.++|||||||++|||+||. .||......
T Consensus       169 ~~~~~Kl~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~  243 (299)
T d1ywna1         169 EKNVVKICDFGLARDIYKDPDY-----VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID  243 (299)
T ss_dssp             GGGCEEECC------CCSCTTS-----CCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS
T ss_pred             CCCcEEEccCcchhhccccccc-----cccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHH
Confidence            9999999999999976554332     23445789999977 87  778999999999999999999975 466542211


Q ss_pred             CchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          517 CLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       517 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                                       +.+...+.....+...+         .....+.+++.+||+.+|++||||+||+++|+.+.+.
T Consensus       244 -----------------~~~~~~~~~~~~~~~~~---------~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq~  297 (299)
T d1ywna1         244 -----------------EEFCRRLKEGTRMRAPD---------YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  297 (299)
T ss_dssp             -----------------HHHHHHHHHTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHhcCCCCCCCc---------cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence                             11112222211111111         1112345677899999999999999999999988653

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-27  Score=239.15  Aligned_cols=171  Identities=21%  Similarity=0.224  Sum_probs=126.2

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCC--------------------CcccCHHHHHHHHhhC----------------
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEA--------------------TRRLDLAEGLKIAVDI----------------  433 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~--------------------~~~l~~~~~~~ia~~i----------------  433 (614)
                      +...+..++|||||++|+|.++|+....                    ...++|..+..|+.++                
T Consensus       110 ~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRD  189 (325)
T d1rjba_         110 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRD  189 (325)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred             EeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeecc
Confidence            3456778999999999999999975431                    2358999999988888                


Q ss_pred             --CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CC
Q 046036          434 --PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GK  507 (614)
Q Consensus       434 --~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~  507 (614)
                        |+|||+|.++.+||+|||+|+........     .......||+.|+| |.  ...++.++|||||||++|||+| |+
T Consensus       190 lKp~Nill~~~~~~Kl~DFGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~  264 (325)
T d1rjba_         190 LAARNVLVTHGKVVKICDFGLARDIMSDSNY-----VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGV  264 (325)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCGGGCTTS-----EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred             CchhccccccCCeEEEeeccccccccCCCce-----eeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCC
Confidence              99999999999999999999877654321     22345778999977 86  7789999999999999999998 89


Q ss_pred             CCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHH
Q 046036          508 RPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMV  587 (614)
Q Consensus       508 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~  587 (614)
                      .||.+....                 +.+...+........+.         .+...+.+++..||+.+|++||||+||+
T Consensus       265 ~Pf~~~~~~-----------------~~~~~~~~~~~~~~~p~---------~~~~~l~~li~~cl~~dP~~RPt~~ei~  318 (325)
T d1rjba_         265 NPYPGIPVD-----------------ANFYKLIQNGFKMDQPF---------YATEEIYIIMQSCWAFDSRKRPSFPNLT  318 (325)
T ss_dssp             CSSTTCCCS-----------------HHHHHHHHTTCCCCCCT---------TCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCCCCCHH-----------------HHHHHHHhcCCCCCCCC---------cCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence            999753221                 11112222222111111         1112345677899999999999999999


Q ss_pred             HHHH
Q 046036          588 MEMN  591 (614)
Q Consensus       588 ~~L~  591 (614)
                      ++|.
T Consensus       319 ~~L~  322 (325)
T d1rjba_         319 SFLG  322 (325)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9985

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1e-25  Score=231.95  Aligned_cols=267  Identities=25%  Similarity=0.290  Sum_probs=161.4

Q ss_pred             CCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCC
Q 046036            9 NLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN   88 (614)
Q Consensus         9 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~   88 (614)
                      .+.+|++|++++|.|+..  +.+..+++|++|+|++|+|++. | .   +.+++ +|++|++++|++++..  .++.+++
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~---l~~L~-~L~~L~L~~n~i~~i~--~l~~l~~  111 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-P---LKNLT-KLVDILMNNNQIADIT--PLANLTN  111 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-G---GTTCT-TCCEEECCSSCCCCCG--GGTTCTT
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-c---ccCCc-cccccccccccccccc--ccccccc
Confidence            467899999999999853  4688899999999999999953 3 2   77887 9999999999998543  3889999


Q ss_pred             CCEEeccCCcCcccCCccccCCCCCCcccc--------------------------------------------------
Q 046036           89 LIQLGLDRNCLAGSIPFSIGKLQNLQKLNP--------------------------------------------------  118 (614)
Q Consensus        89 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l--------------------------------------------------  118 (614)
                      |+.|++++|.+++..+...  ...+..+..                                                  
T Consensus       112 L~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (384)
T d2omza2         112 LTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD  189 (384)
T ss_dssp             CCEEECCSSCCCCCGGGTT--CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            9999999998875433211  111111100                                                  


Q ss_pred             ---cccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCC
Q 046036          119 ---LATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLS  195 (614)
Q Consensus       119 ---~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  195 (614)
                         ...-.++..+++++|.+++..|  +..+++|+.|++++|+++. + ..+..+++|+.|++++|.+++..  .+..++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~  263 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLT  263 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccc
Confidence               0000034566777777775543  4556677777777777763 2 24566677777777777776433  256667


Q ss_pred             CCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECc
Q 046036          196 NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLS  275 (614)
Q Consensus       196 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls  275 (614)
                      +|+.|++++|.+++..+  +..++.++.++++.|.+++  ...+..+++++.|++++|++++..  .+..+++|+.|+++
T Consensus       264 ~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~  337 (384)
T d2omza2         264 KLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred             cCCEeeccCcccCCCCc--ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence            77777777777664322  3444444444444444442  122344444444555544444322  13444444555555


Q ss_pred             CCcCcccCCCccccCCCceEEEecC
Q 046036          276 FNNFEGQLPSMSVFTNTSVISIVGN  300 (614)
Q Consensus       276 ~N~l~~~~p~~~~~~~l~~~~~~~N  300 (614)
                      +|++++ ++.+..+++++.+++.+|
T Consensus       338 ~n~l~~-l~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         338 NNKVSD-VSSLANLTNINWLSAGHN  361 (384)
T ss_dssp             SSCCCC-CGGGGGCTTCCEEECCSS
T ss_pred             CCCCCC-ChhHcCCCCCCEEECCCC
Confidence            444443 223344444444444444

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.3e-27  Score=231.29  Aligned_cols=172  Identities=20%  Similarity=0.243  Sum_probs=127.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|+|.+++... ....++|..+..|+.|+                  |+|||+|+++.+||+|||
T Consensus        82 ~~~~~~~~iv~E~~~~g~l~~~l~~~-~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG  160 (287)
T d1opja_          82 CTREPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFG  160 (287)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHS-CTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred             EeeCCeeEEEeecccCcchHHHhhhc-cccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEcccc
Confidence            45567889999999999999999754 24569999998888877                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +|+.......      ...+...||+.|+| |+  ...++.|+|||||||++|||+||..|+.....             
T Consensus       161 ~a~~~~~~~~------~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~-------------  221 (287)
T d1opja_         161 LSRLMTGDTY------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID-------------  221 (287)
T ss_dssp             CTTTCCSSSS------EEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC-------------
T ss_pred             ceeecCCCCc------eeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch-------------
Confidence            9998765432      23344678999977 86  77899999999999999999998777643211             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                          ...+...+.........  .       .....+.+++..||+.+|++||||+||++.|+.+.
T Consensus       222 ----~~~~~~~i~~~~~~~~~--~-------~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~  274 (287)
T d1opja_         222 ----LSQVYELLEKDYRMERP--E-------GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF  274 (287)
T ss_dssp             ----HHHHHHHHHTTCCCCCC--T-------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             ----HHHHHHHHhcCCCCCCC--c-------cchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence                11111222222111111  1       11223456788999999999999999999998764

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.5e-27  Score=229.87  Aligned_cols=175  Identities=17%  Similarity=0.275  Sum_probs=120.8

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|++.+++...  ...++|..+.+++.++                  |+|||+|.++.+||+|||
T Consensus        78 ~~~~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFG  155 (283)
T d1mqba_          78 ISKYKPMMIITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFG  155 (283)
T ss_dssp             ECSSSSEEEEEECCTTEEHHHHHHHT--TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCC
T ss_pred             EecCCceEEEEEecccCcchhhhhcc--cccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccc
Confidence            34567789999999999999988753  3469999999998888                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +|+.+......    ........||+.|+| |+  ...++.++|||||||++|||+||..|+......            
T Consensus       156 la~~~~~~~~~----~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~------------  219 (283)
T d1mqba_         156 LSRVLEDDPEA----TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN------------  219 (283)
T ss_dssp             C---------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH------------
T ss_pred             hhhcccCCCcc----ceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCH------------
Confidence            99987654321    122344678999977 87  778999999999999999999977765432111            


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                          .+++ ..+..........         ++...+.+++.+||+.+|++||||.||+++|+++.+.
T Consensus       220 ----~~~~-~~i~~~~~~~~~~---------~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         220 ----HEVM-KAINDGFRLPTPM---------DCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             ----HHHH-HHHHTTCCCCCCT---------TCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             ----HHHH-HHHhccCCCCCch---------hhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence                1111 1122211111111         1223455788899999999999999999999887653

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.7e-27  Score=230.51  Aligned_cols=167  Identities=20%  Similarity=0.282  Sum_probs=122.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++|||||++|+|.++++..   ..++|..+.+|+.|+                  |+|||++.++.+|++|||+|+.
T Consensus        80 ~~~~lvmE~~~~g~L~~~l~~~---~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~  156 (277)
T d1xbba_          80 ESWMLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKA  156 (277)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             CCEEEEEEcCCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhh
Confidence            4568999999999999999853   359999999998888                  9999999999999999999997


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      +......    ........||+.|+| |.  ...++.++|||||||++|||+| |+.||.+....               
T Consensus       157 ~~~~~~~----~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~---------------  217 (277)
T d1xbba_         157 LRADENY----YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS---------------  217 (277)
T ss_dssp             CCTTCSE----EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---------------
T ss_pred             ccccccc----cccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH---------------
Confidence            7554321    122344679999977 86  6788999999999999999998 89999753211               


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                        ++. ..+........  +.       .+...+.+++.+||+.+|++||||+||+++|+..-
T Consensus       218 --~~~-~~i~~~~~~~~--p~-------~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         218 --EVT-AMLEKGERMGC--PA-------GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             --HHH-HHHHTTCCCCC--CT-------TCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             --HHH-HHHHcCCCCCC--Cc-------ccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence              111 11111111110  00       11123446778999999999999999999988754

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=6.8e-27  Score=231.98  Aligned_cols=173  Identities=22%  Similarity=0.260  Sum_probs=126.2

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC---------------------CCcccCHHHHHHHHhhC---------------
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE---------------------ATRRLDLAEGLKIAVDI---------------  433 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~---------------------~~~~l~~~~~~~ia~~i---------------  433 (614)
                      +..++..++|||||++|+|.++++...                     ....++|..++.|+.++               
T Consensus        85 ~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHr  164 (301)
T d1lufa_          85 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHR  164 (301)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             eccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEee
Confidence            445677899999999999999986421                     12358999999998888               


Q ss_pred             ---CCceeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCC
Q 046036          434 ---PSNVLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGK  507 (614)
Q Consensus       434 ---~~NILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~  507 (614)
                         |+|||+|.++.+||+|||+|+.+......     ...+...||+.|+| |.  ...++.++||||||||+|||+||.
T Consensus       165 DlKp~NILld~~~~~Kl~DFGls~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~  239 (301)
T d1lufa_         165 DLATRNCLVGENMVVKIADFGLSRNIYSADYY-----KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYG  239 (301)
T ss_dssp             CCSGGGEEECGGGCEEECCCSCHHHHTGGGCB-----C----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred             EEcccceEECCCCcEEEccchhheeccCCccc-----cccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccC
Confidence               99999999999999999999877544321     23445789999988 76  678999999999999999999996


Q ss_pred             -CCCCcccccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHH
Q 046036          508 -RPTDEMFADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREM  586 (614)
Q Consensus       508 -~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev  586 (614)
                       .||.....                 .++......+...+.|.          .....+.+++..||+.+|++||||.||
T Consensus       240 ~~p~~~~~~-----------------~e~~~~v~~~~~~~~p~----------~~~~~~~~li~~cl~~~P~~RPt~~ev  292 (301)
T d1lufa_         240 LQPYYGMAH-----------------EEVIYYVRDGNILACPE----------NCPLELYNLMRLCWSKLPADRPSFCSI  292 (301)
T ss_dssp             CCTTTTSCH-----------------HHHHHHHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCCCCCH-----------------HHHHHHHHcCCCCCCCc----------cchHHHHHHHHHHcCCChhHCcCHHHH
Confidence             46654211                 12222222211111111          112345578889999999999999999


Q ss_pred             HHHHHHhH
Q 046036          587 VMEMNVIK  594 (614)
Q Consensus       587 ~~~L~~i~  594 (614)
                      +++|+++.
T Consensus       293 ~~~L~~i~  300 (301)
T d1lufa_         293 HRILQRMC  300 (301)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            99999875

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-26  Score=222.34  Aligned_cols=168  Identities=20%  Similarity=0.297  Sum_probs=126.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++||||+++|+|.+++...  ...++|..+.+++.|+                  |+|||+|+++.+||+|||
T Consensus        68 ~~~~~~~~iv~Ey~~~g~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG  145 (258)
T d1k2pa_          68 CTKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFG  145 (258)
T ss_dssp             ECCSSSEEEEEECCTTEEHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCS
T ss_pred             EeeCCceEEEEEccCCCcHHHhhhcc--ccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcch
Confidence            44567789999999999999998753  3468899999988888                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhh
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +++.......      .......||+.|+| |.  ...++.|+|||||||++|||+| |+.||......           
T Consensus       146 ~a~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~-----------  208 (258)
T d1k2pa_         146 LSRYVLDDEY------TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS-----------  208 (258)
T ss_dssp             SCCBCSSSSC------CCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHH-----------
T ss_pred             hheeccCCCc------eeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHH-----------
Confidence            9987665432      23345679999987 87  6789999999999999999998 79999754221           


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNV  592 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~  592 (614)
                            ++. ..+........+.         .....+.+++..||+.+|++||||+|+++.|..
T Consensus       209 ------~~~-~~i~~~~~~~~p~---------~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         209 ------ETA-EHIAQGLRLYRPH---------LASEKVYTIMYSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             ------HHH-HHHHTTCCCCCCT---------TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             ------HHH-HHHHhCCCCCCcc---------cccHHHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence                  111 1222221111111         111234567789999999999999999999864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-26  Score=228.63  Aligned_cols=176  Identities=20%  Similarity=0.296  Sum_probs=128.0

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      +...++|||||++|+|.++++..  ...++|..+++++.|+                  |+|||+|+++.+||+|||+++
T Consensus       101 ~~~~~lv~E~~~~g~l~~~~~~~--~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~  178 (311)
T d1r0pa_         101 EGSPLVVLPYMKHGDLRNFIRNE--THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLAR  178 (311)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGC
T ss_pred             CCceEEEEEEeecCchhhhhccc--cccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchh
Confidence            45689999999999999999864  3457888888888888                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .........   ........||+.|+| |+  ...++.++|||||||++|||+||+.|+...... ..            
T Consensus       179 ~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~-~~------------  242 (311)
T d1r0pa_         179 DMYDKEFDS---VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-FD------------  242 (311)
T ss_dssp             CTTTTTCCC---TTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------------------
T ss_pred             hcccccccc---ceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCH-HH------------
Confidence            876543321   122334678999977 76  778999999999999999999988887642211 11            


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHhhc
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVLLG  599 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~~~  599 (614)
                         +......+.....|.          .+...+.+++..||+.+|++||+|.||+++|+++...+.+
T Consensus       243 ---~~~~i~~g~~~~~p~----------~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~~~  297 (311)
T d1r0pa_         243 ---ITVYLLQGRRLLQPE----------YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG  297 (311)
T ss_dssp             ---CHHHHHTTCCCCCCT----------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred             ---HHHHHHcCCCCCCcc----------cCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhhhh
Confidence               111111111111111          1112345678899999999999999999999999765443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=5.1e-25  Score=226.68  Aligned_cols=261  Identities=23%  Similarity=0.303  Sum_probs=206.9

Q ss_pred             ccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC---
Q 046036            5 QEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA---   81 (614)
Q Consensus         5 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~---   81 (614)
                      +.+..+++|++|+|++|+|++..  .|+++++|++|++++|.+++..|     +.+++ +|+.|++++|.+++..+.   
T Consensus        60 ~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~-----l~~l~-~L~~L~~~~~~~~~~~~~~~~  131 (384)
T d2omza2          60 DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP-----LANLT-NLTGLTLFNNQITDIDPLKNL  131 (384)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-----GTTCT-TCCEEECCSSCCCCCGGGTTC
T ss_pred             cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc-----ccccc-ccccccccccccccccccccc
Confidence            36788999999999999999654  39999999999999999985322     67787 999999999888642211   


Q ss_pred             ------------------------------------------------------------CCcCCCCCCEEeccCCcCcc
Q 046036           82 ------------------------------------------------------------GIPKYFNLIQLGLDRNCLAG  101 (614)
Q Consensus        82 ------------------------------------------------------------~~~~l~~L~~L~L~~N~l~~  101 (614)
                                                                                  .+..+++++.+++++|.+++
T Consensus       132 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~  211 (384)
T d2omza2         132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD  211 (384)
T ss_dssp             TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCC
Confidence                                                                        12233445555555555543


Q ss_pred             cCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCC
Q 046036          102 SIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHN  181 (614)
Q Consensus       102 ~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  181 (614)
                      ..|  +...++|+            .|++++|.++..  +.+..+++|+.|++++|.+++..+  +..+++|++|++++|
T Consensus       212 ~~~--~~~~~~L~------------~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~  273 (384)
T d2omza2         212 ITP--LGILTNLD------------ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  273 (384)
T ss_dssp             CGG--GGGCTTCC------------EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CCc--ccccCCCC------------EEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCc
Confidence            332  23334444            555999999843  468899999999999999986443  778899999999999


Q ss_pred             CCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCc
Q 046036          182 NFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK  261 (614)
Q Consensus       182 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  261 (614)
                      .+++..  .+..+..++.++++.|.+++.  ..+..+++++.|++++|++++..  .+..+++|+.|++++|+|++ ++ 
T Consensus       274 ~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-  345 (384)
T d2omza2         274 QISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-  345 (384)
T ss_dssp             CCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-
T ss_pred             ccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-
Confidence            998543  378899999999999999863  45788899999999999998653  38889999999999999985 44 


Q ss_pred             ccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecC
Q 046036          262 ELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGN  300 (614)
Q Consensus       262 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N  300 (614)
                      .+..+++|+.|++++|++++.+| ...+++++.+++++|
T Consensus       346 ~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            58899999999999999998765 677889999999887

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-26  Score=227.41  Aligned_cols=169  Identities=24%  Similarity=0.279  Sum_probs=118.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++|||||++|+|.++++... ...++|.++++|+.++                  |+|||+|.++.+||+|||+|+
T Consensus        83 ~~~~~lv~Ey~~~g~l~~~~~~~~-~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~  161 (285)
T d1fmka3          83 EEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLAR  161 (285)
T ss_dssp             SSSCEEEECCCTTCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             cCCeEEEEEecCCCchhhhhhhcc-cccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhh
Confidence            345789999999999999987542 3459999999999998                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......      .......||+.|+| |+  .+.++.++|||||||++|||+||..|+.....                
T Consensus       162 ~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~----------------  219 (285)
T d1fmka3         162 LIEDNEY------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV----------------  219 (285)
T ss_dssp             --------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC----------------
T ss_pred             hccCCCc------eeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCC----------------
Confidence            7754432      23445779999977 87  77899999999999999999998777643211                


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                      ..+.++....+...+.+   .       ++...+.+++.+||+.+|++||||.+|+++|+.+-
T Consensus       220 ~~~~~~~i~~~~~~~~~---~-------~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~  272 (285)
T d1fmka3         220 NREVLDQVERGYRMPCP---P-------ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  272 (285)
T ss_dssp             HHHHHHHHHTTCCCCCC---T-------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCCCCCC---c-------ccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhh
Confidence            11222222221111111   1       11223456788999999999999999999887644

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-26  Score=225.01  Aligned_cols=165  Identities=20%  Similarity=0.316  Sum_probs=118.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.|+                  |+|||+++++.+||+|||+
T Consensus        73 ~~~~~~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~  149 (271)
T d1nvra_          73 REGNIQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGL  149 (271)
T ss_dssp             EETTEEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             ccCceeEEEEeccCCCcHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchh
Confidence            3466789999999999999999753   368999888888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      |+........     ...+..+||+.|+| |.  ... ++.++||||+||++|||+||+.||............+..   
T Consensus       150 a~~~~~~~~~-----~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~---  221 (271)
T d1nvra_         150 ATVFRYNNRE-----RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE---  221 (271)
T ss_dssp             CEECEETTEE-----CCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHT---
T ss_pred             heeeccCCcc-----ccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhc---
Confidence            9987543221     22345789999977 87  444 467899999999999999999999753322211111111   


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                   ......+  ....+    +   .+.++..+|++.+|++|||++|+++
T Consensus       222 -------------~~~~~~~--~~~~s----~---~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         222 -------------KKTYLNP--WKKID----S---APLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             -------------TCTTSTT--GGGSC----H---HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             -------------CCCCCCc--cccCC----H---HHHHHHHHHcCCChhHCcCHHHHhc
Confidence                         0000000  01111    1   2335667999999999999999864

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-26  Score=222.54  Aligned_cols=167  Identities=21%  Similarity=0.235  Sum_probs=117.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++||||+++|+|.++|+.. ....++|..+++|+.|+                  |+|||++.++.+|++|||++
T Consensus        72 ~~~~~~lv~ey~~~g~L~~~l~~~-~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s  150 (262)
T d1byga_          72 EKGGLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT  150 (262)
T ss_dssp             C--CCEEEECCCTTEEHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-
T ss_pred             cCCcEEEEEeccCCCCHHHHHHhc-CCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccc
Confidence            345679999999999999999753 23458999999999998                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.....          .....+|+.|+| |+  ...++.++|||||||++|||+| |+.|+......  .+..++     
T Consensus       151 ~~~~~~----------~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~--~~~~~i-----  213 (262)
T d1byga_         151 KEASST----------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRV-----  213 (262)
T ss_dssp             ---------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHH-----
T ss_pred             eecCCC----------CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHH--HHHHHH-----
Confidence            876543          223568889966 87  6789999999999999999999 67777643211  111111     


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                                 .....  ++.....       ..++.++..+||+.+|++||||.|++++|++++..
T Consensus       214 -----------~~~~~--~~~~~~~-------~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~~  260 (262)
T d1byga_         214 -----------EKGYK--MDAPDGC-------PPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  260 (262)
T ss_dssp             -----------TTTCC--CCCCTTC-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -----------HcCCC--CCCCccC-------CHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHhC
Confidence                       11111  1110111       12334677799999999999999999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.2e-25  Score=212.73  Aligned_cols=203  Identities=23%  Similarity=0.232  Sum_probs=147.1

Q ss_pred             ccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccc
Q 046036           59 TNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGN  138 (614)
Q Consensus        59 ~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~  138 (614)
                      .+.. .+.+++.+++.|+ .+|..+.  ++|++|+|++|+|++..+..|.++++|++|+            |++|+|+. 
T Consensus         7 ~~~~-~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~------------L~~N~l~~-   69 (266)
T d1p9ag_           7 SKVA-SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN------------LDRAELTK-   69 (266)
T ss_dssp             ECST-TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE------------CTTSCCCE-
T ss_pred             cccC-CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccc------------cccccccc-
Confidence            3444 6667788888888 5777664  4788888888888876667788888888777            88888874 


Q ss_pred             cchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCc
Q 046036          139 IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNR  218 (614)
Q Consensus       139 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l  218 (614)
                      ++ .++.+++|++|+|++|+++ ..+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.++...+..+..+
T Consensus        70 l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l  147 (266)
T d1p9ag_          70 LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT  147 (266)
T ss_dssp             EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             cc-ccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceecccccccc
Confidence            33 3567888888888888887 456667777888888888888776666677777777777777777776666666667


Q ss_pred             ccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcc
Q 046036          219 SKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEG  281 (614)
Q Consensus       219 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  281 (614)
                      ++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.+
T Consensus       148 ~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            77777777777777666666666777777777777776 556656666666666666665554

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9e-26  Score=218.51  Aligned_cols=158  Identities=20%  Similarity=0.239  Sum_probs=118.8

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        76 ~~~~~~~ivmEy~~~g~L~~~l~~~---~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~  152 (263)
T d2j4za1          76 HDATRVYLILEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW  152 (263)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCS
T ss_pred             EECCEEEEEEeecCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccce
Confidence            4567789999999999999999753   358999888888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+......         ....+||+.|+| |.  ...++.++|||||||++|||+||+.||.....              
T Consensus       153 a~~~~~~~---------~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--------------  209 (263)
T d2j4za1         153 SVHAPSSR---------RTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY--------------  209 (263)
T ss_dssp             CSCCCCCC---------CEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH--------------
T ss_pred             eeecCCCc---------ccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH--------------
Confidence            98665432         345789999977 87  66789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+.......... ..|.   ..    .+   .+.++...|++.+|++|||++|+++
T Consensus       210 ---~~~~~~i~~~~~-~~p~---~~----s~---~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         210 ---QETYKRISRVEF-TFPD---FV----TE---GARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             ---HHHHHHHHTTCC-CCCT---TS----CH---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ---HHHHHHHHcCCC-CCCc---cC----CH---HHHHHHHHHccCCHhHCcCHHHHHc
Confidence               111111111111 1111   01    12   2335667999999999999999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-24  Score=211.97  Aligned_cols=201  Identities=25%  Similarity=0.264  Sum_probs=109.2

Q ss_pred             CCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCC
Q 046036           86 YFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK  165 (614)
Q Consensus        86 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~  165 (614)
                      ...+.+.+.+++.++ .+|..+.  ++|++|+            |++|+|++..+..|.++++|++|+|++|+|+ .+| 
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~------------Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-   71 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILH------------LSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-   71 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEE------------CTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEE------------CcCCcCCCcCHHHhhcccccccccccccccc-ccc-
Confidence            344455555555555 3444332  2344444            5555555444455555555666666655555 232 


Q ss_pred             CCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCcc
Q 046036          166 PSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGT  245 (614)
Q Consensus       166 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  245 (614)
                      .++.+++|++|+|++|+++ ..+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..++.|
T Consensus        72 ~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccc
Confidence            2345555556666665555 334445555555566665555555555555555555555565555555545555555555


Q ss_pred             ceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCccccCCCceEEEecCCCcc
Q 046036          246 IDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMSVFTNTSVISIVGNGKLC  304 (614)
Q Consensus       246 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~N~~~c  304 (614)
                      +.|++++|++++..+..|..+++|+.|+|++|+|+..++....+.+++.+++.||||.|
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             hhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence            55666666555555555555555666666666555433344445555555556665555

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-26  Score=224.86  Aligned_cols=162  Identities=26%  Similarity=0.284  Sum_probs=112.2

Q ss_pred             CCceeEEecccCCCchhhhccCCC-CCcccCHHHHHHHHhhC-----------------------CCceeeCCCCCeeec
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNE-ATRRLDLAEGLKIAVDI-----------------------PSNVLLDYDMTAYVG  448 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~-~~~~l~~~~~~~ia~~i-----------------------~~NILld~~~~~kl~  448 (614)
                      .+..++|||||++|+|.+++.... ....+++..+..++.|+                       |+|||++.++.+||+
T Consensus        77 ~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~  156 (269)
T d2java1          77 NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLG  156 (269)
T ss_dssp             --CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEEC
T ss_pred             CCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEe
Confidence            345789999999999999986422 23468888877776665                       999999999999999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      |||+|+.+....       ......+||++|+| |.  ...++.++|||||||++|||+||+.||.....          
T Consensus       157 DFG~a~~~~~~~-------~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~----------  219 (269)
T d2java1         157 DFGLARILNHDT-------SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ----------  219 (269)
T ss_dssp             CHHHHHHC------------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH----------
T ss_pred             eccceeecccCC-------CccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH----------
Confidence            999999876543       22345789999987 87  66789999999999999999999999975321          


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             .+.............|..   .+    +   .+.++..+|++.+|++|||+.|+++
T Consensus       220 -------~~~~~~i~~~~~~~~~~~---~s----~---~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         220 -------KELAGKIREGKFRRIPYR---YS----D---ELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             -------HHHHHHHHHTCCCCCCTT---SC----H---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -------HHHHHHHHcCCCCCCCcc---cC----H---HHHHHHHHHcCCChhHCcCHHHHHh
Confidence                   111111122211111111   11    1   2345667999999999999999874

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.7e-26  Score=220.81  Aligned_cols=159  Identities=20%  Similarity=0.349  Sum_probs=115.7

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------------CCceeeC-CCCCeeecccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------------PSNVLLD-YDMTAYVGDFG  451 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------------~~NILld-~~~~~kl~DfG  451 (614)
                      +...++|||||++|+|.+++...   ..+++..+..++.++                    |+|||++ +++.+||+|||
T Consensus        84 ~~~~~ivmE~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFG  160 (270)
T d1t4ha_          84 KKCIVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLG  160 (270)
T ss_dssp             CEEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTT
T ss_pred             CCEEEEEEeCCCCCcHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecC
Confidence            45679999999999999999753   358888887777766                    9999996 57899999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc-cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +|+.....         .....+||+.|+| |. ...++.++|||||||++|||+||+.||.+....             
T Consensus       161 la~~~~~~---------~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~-------------  218 (270)
T d1t4ha_         161 LATLKRAS---------FAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNA-------------  218 (270)
T ss_dssp             GGGGCCTT---------SBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH-------------
T ss_pred             cceeccCC---------ccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccH-------------
Confidence            99865432         2345789999977 88 677999999999999999999999999743211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                          +.+...+.....+  ..   +..   .....+.++...|++.+|++|||++|+++
T Consensus       219 ----~~~~~~i~~~~~~--~~---~~~---~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         219 ----AQIYRRVTSGVKP--AS---FDK---VAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             ----HHHHHHHTTTCCC--GG---GGG---CCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ----HHHHHHHHcCCCC--cc---cCc---cCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence                1111122211110  00   000   01112446778999999999999999875

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=222.02  Aligned_cols=174  Identities=22%  Similarity=0.304  Sum_probs=130.0

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCcee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVL  438 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NIL  438 (614)
                      +..++..++|||||++|+|.++|..+.             ....++|.++++++.|+                  |+|||
T Consensus        88 ~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiL  167 (299)
T d1fgka_          88 CTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  167 (299)
T ss_dssp             ECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             cccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeeccccee
Confidence            445677899999999999999997543             12468999999998888                  99999


Q ss_pred             eCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCccc
Q 046036          439 LDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMF  514 (614)
Q Consensus       439 ld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~  514 (614)
                      ++.++.+||+|||+++........     .......||+.|+| |.  ...++.|+||||||||+|||+| |+.||....
T Consensus       168 l~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~  242 (299)
T d1fgka_         168 VTEDNVMKIADFGLARDIHHIDYY-----KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP  242 (299)
T ss_dssp             ECTTCCEEECSTTCCCCGGGCCTT-----CCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ecCCCCeEeccchhhccccccccc-----cccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC
Confidence            999999999999999987654332     23445679999977 76  7889999999999999999998 677876422


Q ss_pred             ccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhH
Q 046036          515 ADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIK  594 (614)
Q Consensus       515 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~  594 (614)
                      .                 .++. ..+.....+....         .....+.+++.+||+.+|++||||.||+++|+++.
T Consensus       243 ~-----------------~~~~-~~i~~~~~~~~p~---------~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~  295 (299)
T d1fgka_         243 V-----------------EELF-KLLKEGHRMDKPS---------NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV  295 (299)
T ss_dssp             H-----------------HHHH-HHHHTTCCCCCCS---------SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             H-----------------HHHH-HHHHcCCCCCCCc---------cchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHh
Confidence            1                 1111 1222211111111         11123557888999999999999999999999885


Q ss_pred             H
Q 046036          595 E  595 (614)
Q Consensus       595 ~  595 (614)
                      .
T Consensus       296 a  296 (299)
T d1fgka_         296 A  296 (299)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5e-26  Score=222.47  Aligned_cols=170  Identities=20%  Similarity=0.247  Sum_probs=115.6

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++|||||++|+|.+++...  ...++|..+..++.|+                  |+||+++.++.+||+|||+|+
T Consensus        79 ~~~~~iv~E~~~~g~l~~~~~~~--~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~  156 (273)
T d1mp8a_          79 ENPVWIIMELCTLGELRSFLQVR--KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR  156 (273)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHT--TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred             cCeEEEEEEeccCCcHHhhhhcc--CCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhhe
Confidence            45689999999999999987653  3358999999888887                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      .+.....      ...+...||+.|+| |.  ...++.++|||||||++|||+| |+.||......              
T Consensus       157 ~~~~~~~------~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~--------------  216 (273)
T d1mp8a_         157 YMEDSTY------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--------------  216 (273)
T ss_dssp             --------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--------------
T ss_pred             eccCCcc------eeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHH--------------
Confidence            7754432      23445678999987 77  6789999999999999999998 88898753221              


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                         ++......+...+.+   +..       ...+.+++..||+.+|++||||.||++.|+.+.+..
T Consensus       217 ---~~~~~i~~~~~~~~~---~~~-------~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~  270 (273)
T d1mp8a_         217 ---DVIGRIENGERLPMP---PNC-------PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE  270 (273)
T ss_dssp             ---GHHHHHHTTCCCCCC---TTC-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHcCCCCCCC---CCC-------CHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence               111111111111111   111       123446778999999999999999999999887653

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.2e-26  Score=224.88  Aligned_cols=172  Identities=24%  Similarity=0.319  Sum_probs=125.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCC-------------CCcccCHHHHHHHHhhC------------------CCceee
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNE-------------ATRRLDLAEGLKIAVDI------------------PSNVLL  439 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~-------------~~~~l~~~~~~~ia~~i------------------~~NILl  439 (614)
                      ..++..++|||||++|+|.++|+...             ....++|..+.+++.|+                  |+|||+
T Consensus        81 ~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~  160 (309)
T d1fvra_          81 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILV  160 (309)
T ss_dssp             EETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             ecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEE
Confidence            34677899999999999999997542             24579999999999888                  999999


Q ss_pred             CCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCC-CCCcccc
Q 046036          440 DYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKR-PTDEMFA  515 (614)
Q Consensus       440 d~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~-p~~~~~~  515 (614)
                      +.++.+||+|||+|+......        ......||+.|+| |.  ...++.++|||||||++|||++|.. ||.... 
T Consensus       161 ~~~~~~kl~DfG~a~~~~~~~--------~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~-  231 (309)
T d1fvra_         161 GENYVAKIADFGLSRGQEVYV--------KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT-  231 (309)
T ss_dssp             CGGGCEEECCTTCEESSCEEC--------CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC-
T ss_pred             cCCCceEEccccccccccccc--------cccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC-
Confidence            999999999999998665432        1234678999976 77  7789999999999999999999765 565321 


Q ss_pred             cCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          516 DCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       516 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                                      ..++.+. +.....+...  ..       ....+.+++.+||+.+|++||||.||++.|+++.+
T Consensus       232 ----------------~~~~~~~-i~~~~~~~~~--~~-------~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~  285 (309)
T d1fvra_         232 ----------------CAELYEK-LPQGYRLEKP--LN-------CDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE  285 (309)
T ss_dssp             ----------------HHHHHHH-GGGTCCCCCC--TT-------BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHH-HHhcCCCCCC--cc-------CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence                            1122222 2222111111  11       11234467779999999999999999999999876


Q ss_pred             Hh
Q 046036          596 VL  597 (614)
Q Consensus       596 ~~  597 (614)
                      ..
T Consensus       286 ~~  287 (309)
T d1fvra_         286 ER  287 (309)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-25  Score=219.69  Aligned_cols=169  Identities=19%  Similarity=0.206  Sum_probs=122.9

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      .+..++|||||++|++.+++...  ...++|..+.+++.++                  |+||+++.++.+||+|||+++
T Consensus        82 ~~~~~lv~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~  159 (273)
T d1u46a_          82 TPPMKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMR  159 (273)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             ecchheeeeeecCcchhhhhhcc--cCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhh
Confidence            34568999999999999988753  3459999999998888                  999999999999999999999


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      ........    ........|++.|+| |.  ...++.++|||||||++|||+| |+.||.+...               
T Consensus       160 ~~~~~~~~----~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~---------------  220 (273)
T d1u46a_         160 ALPQNDDH----YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG---------------  220 (273)
T ss_dssp             ECCC-CCE----EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH---------------
T ss_pred             hcccCCCc----ceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCH---------------
Confidence            87654331    122334678889977 76  6788999999999999999998 8999975321               


Q ss_pred             ChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          531 SVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       531 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                        .+.+.........+.  .....       ...+.+++..||+.+|++||||.||++.|++.
T Consensus       221 --~~~~~~i~~~~~~~~--~~~~~-------~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         221 --SQILHKIDKEGERLP--RPEDC-------PQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             --HHHHHHHHTSCCCCC--CCTTC-------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             --HHHHHHHHhCCCCCC--Ccccc-------cHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence              222222222222111  11111       12345678899999999999999999999875

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-25  Score=217.93  Aligned_cols=162  Identities=17%  Similarity=0.239  Sum_probs=119.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...    .+++.....++.|+                  |+|||++.++.+||+|||+
T Consensus        87 ~~~~~~~ivmEy~~gg~L~~~~~~~----~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~  162 (293)
T d1yhwa1          87 LVGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF  162 (293)
T ss_dssp             EETTEEEEEEECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred             EECCEEEEEEEecCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchh
Confidence            3456789999999999999988643    48888888888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+.+.....       .....+||+.|+| |.  ...++.++||||+||++|||+||+.||.+...              
T Consensus       163 a~~~~~~~~-------~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~--------------  221 (293)
T d1yhwa1         163 CAQITPEQS-------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--------------  221 (293)
T ss_dssp             CEECCSTTC-------CBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--------------
T ss_pred             heeeccccc-------cccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCH--------------
Confidence            997754432       2445789999977 87  66789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                         .+.+........ +.........       ..+.++...|++.+|++|||+.|+++
T Consensus       222 ---~~~~~~~~~~~~-~~~~~~~~~s-------~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         222 ---LRALYLIATNGT-PELQNPEKLS-------AIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             ---HHHHHHHHHHCS-CCCSSGGGSC-------HHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ---HHHHHHHHhCCC-CCCCCcccCC-------HHHHHHHHHHccCChhHCcCHHHHhc
Confidence               111111111111 1111111111       12335667999999999999999874

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-25  Score=222.86  Aligned_cols=174  Identities=18%  Similarity=0.235  Sum_probs=127.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC-------CCcccCHHHHHHHHhhC------------------CCceeeCCCCC
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE-------ATRRLDLAEGLKIAVDI------------------PSNVLLDYDMT  444 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~-------~~~~l~~~~~~~ia~~i------------------~~NILld~~~~  444 (614)
                      +..++..++|||||++|+|.++++..+       ....++|..+.+|+.++                  |+|||+|+++.
T Consensus        92 ~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~  171 (308)
T d1p4oa_          92 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFT  171 (308)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCC
T ss_pred             EecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCce
Confidence            345677899999999999999987432       22357899999998887                  99999999999


Q ss_pred             eeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCC-CCCCcccccCchH
Q 046036          445 AYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGK-RPTDEMFADCLSL  520 (614)
Q Consensus       445 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~-~p~~~~~~~~~~l  520 (614)
                      +||+|||+|+.+......     .......||+.|+| |.  ...++.++|||||||++|||+||+ .||....      
T Consensus       172 ~Kl~DFGla~~~~~~~~~-----~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~------  240 (308)
T d1p4oa_         172 VKIGDFGMTRDIYETDYY-----RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS------  240 (308)
T ss_dssp             EEECCTTCCCGGGGGGCE-----EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC------
T ss_pred             EEEeecccceeccCCcce-----eeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCC------
Confidence            999999999977554321     22344679999977 76  778899999999999999999985 5665321      


Q ss_pred             HHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          521 HNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                                 ..+.......+...+.|..          +...+.+++.+||+.+|++||||.||+++|++..+
T Consensus       241 -----------~~~~~~~i~~~~~~~~p~~----------~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         241 -----------NEQVLRFVMEGGLLDKPDN----------CPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             -----------HHHHHHHHHTTCCCCCCTT----------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             -----------HHHHHHHHHhCCCCCCccc----------chHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence                       1222222222221111111          12245577889999999999999999999976643

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.2e-25  Score=218.16  Aligned_cols=163  Identities=16%  Similarity=0.211  Sum_probs=109.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC---CCCCeeecc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD---YDMTAYVGD  449 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld---~~~~~kl~D  449 (614)
                      ..++..++|||||++|||.+++...   ..+++.....++.++                  |+|||++   +++.+||+|
T Consensus        77 ~~~~~~~lvmE~~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~D  153 (307)
T d1a06a_          77 ESGGHLYLIMQLVSGGELFDRIVEK---GFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISD  153 (307)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHTC---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECC
T ss_pred             EECCEEEEEEeccCCCcHHHhhhcc---cCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEec
Confidence            4567789999999999999999753   358999888888877                  9999994   578999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM  526 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~  526 (614)
                      ||+|+......        .....+||+.|+| |.  ...++.++||||+||++|||+||+.||.+...           
T Consensus       154 FG~a~~~~~~~--------~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----------  214 (307)
T d1a06a_         154 FGLSKMEDPGS--------VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND-----------  214 (307)
T ss_dssp             C--------------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----------
T ss_pred             cceeEEccCCC--------eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCH-----------
Confidence            99998765432        2345789999977 87  66789999999999999999999999975321           


Q ss_pred             hCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          527 ALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                            .+.....+...........+..+       ..+.++...|++.+|++|||++|+++
T Consensus       215 ------~~~~~~i~~~~~~~~~~~~~~~s-------~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         215 ------AKLFEQILKAEYEFDSPYWDDIS-------DSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             ------HHHHHHHHTTCCCCCTTTTTTSC-------HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ------HHHHHHHhccCCCCCCccccCCC-------HHHHHHHHHHccCCHhHCcCHHHHhc
Confidence                  12222222222221111111111       22345677999999999999999987

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-25  Score=221.74  Aligned_cols=176  Identities=17%  Similarity=0.185  Sum_probs=127.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCC---------------CCcccCHHHHHHHHhhC------------------CCc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNE---------------ATRRLDLAEGLKIAVDI------------------PSN  436 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~---------------~~~~l~~~~~~~ia~~i------------------~~N  436 (614)
                      +..++..++|||||++|+|.++++...               ....++|..+.+++.|+                  |+|
T Consensus        96 ~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~N  175 (311)
T d1t46a_          96 CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARN  175 (311)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccc
Confidence            455677899999999999999997542               12358999999998888                  999


Q ss_pred             eeeCCCCCeeecccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          437 VLLDYDMTAYVGDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       437 ILld~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |++|.++.+|++|||+++........     ......+||+.|+| |.  ...++.++|||||||++|||+|++.|+...
T Consensus       176 Il~~~~~~~ki~DfG~~~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~  250 (311)
T d1t46a_         176 ILLTHGRITKICDFGLARDIKNDSNY-----VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG  250 (311)
T ss_dssp             EEEETTTEEEECCCGGGSCTTSCTTS-----EECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             ccccccCcccccccchheeccCCCcc-----eEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCC
Confidence            99999999999999999987654322     33445789999977 76  678999999999999999999955554322


Q ss_pred             cccCchHHHHHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHh
Q 046036          514 FADCLSLHNFCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVI  593 (614)
Q Consensus       514 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i  593 (614)
                      ....                +.+...+..........         .....+.+++.+||+.+|++||||.||+++|+++
T Consensus       251 ~~~~----------------~~~~~~i~~~~~~~~~~---------~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~  305 (311)
T d1t46a_         251 MPVD----------------SKFYKMIKEGFRMLSPE---------HAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ  305 (311)
T ss_dssp             CCSS----------------HHHHHHHHHTCCCCCCT---------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCHH----------------HHHHHHHhcCCCCCCcc---------cccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            1111                11112222211111110         1122355678899999999999999999999876


Q ss_pred             HH
Q 046036          594 KE  595 (614)
Q Consensus       594 ~~  595 (614)
                      -.
T Consensus       306 i~  307 (311)
T d1t46a_         306 IS  307 (311)
T ss_dssp             HH
T ss_pred             hc
Confidence            44

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-25  Score=222.53  Aligned_cols=111  Identities=23%  Similarity=0.341  Sum_probs=93.1

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCCeeecccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~~kl~DfG  451 (614)
                      ..++..++|||||++|+|.++++..   ..+++..+..++.|+                   |+|||+++++.+||+|||
T Consensus        74 ~~~~~~~iVmEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFG  150 (322)
T d1s9ja_          74 YSDGEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFG  150 (322)
T ss_dssp             ECSSEEEEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCC
T ss_pred             EECCEEEEEEEcCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCC
Confidence            4567789999999999999999753   358888888777766                   999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +|+......         ....+||++|+| |+  ...++.++||||+||+++||+||+.||...
T Consensus       151 la~~~~~~~---------~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~  206 (322)
T d1s9ja_         151 VSGQLIDSM---------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  206 (322)
T ss_dssp             CCHHHHHHT---------C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred             CccccCCCc---------cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            998765322         334789999977 87  778999999999999999999999999753

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4e-25  Score=220.70  Aligned_cols=169  Identities=21%  Similarity=0.288  Sum_probs=122.9

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      +..++||||+.+|+|.+++...  ...++|..+.+++.++                  |+|||+|.++.+||+|||+|+.
T Consensus        83 ~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~  160 (317)
T d1xkka_          83 STVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  160 (317)
T ss_dssp             SSEEEEEECCTTCBHHHHHHHT--SSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHH
T ss_pred             CCeeEEEEeccCCccccccccc--ccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeecccccee
Confidence            4568999999999999988764  3468999999888887                  9999999999999999999998


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHh-CCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMT-GKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllEllt-G~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      .......     .......||+.|+| |.  .+.++.++|||||||++|||+| |+.||+......  +.          
T Consensus       161 ~~~~~~~-----~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~--~~----------  223 (317)
T d1xkka_         161 LGAEEKE-----YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--IS----------  223 (317)
T ss_dssp             TTTTCC-------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGG--HH----------
T ss_pred             ccccccc-----ccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHH--HH----------
Confidence            7654332     22344679999977 87  7789999999999999999999 788887532211  11          


Q ss_pred             hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHH
Q 046036          532 VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEV  596 (614)
Q Consensus       532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~  596 (614)
                        ..+.   .+...+.|.          .+...+.+++.+||+.+|++||||.||+..|+.+...
T Consensus       224 --~~i~---~~~~~~~p~----------~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         224 --SILE---KGERLPQPP----------ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             --HHHH---HTCCCCCCT----------TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             --HHHH---cCCCCCCCc----------ccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHhC
Confidence              1111   111111111          1122345677899999999999999999999887643

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.6e-25  Score=216.29  Aligned_cols=163  Identities=18%  Similarity=0.224  Sum_probs=117.5

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||+++++.+||+|||+
T Consensus        78 ~~~~~~~ivmEy~~gg~L~~~~~~~---~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~  154 (288)
T d1uu3a_          78 QDDEKLYFGLSYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGT  154 (288)
T ss_dssp             ECSSEEEEEECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             EECCEEEEEEEccCCCCHHHhhhcc---CCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEeccccc
Confidence            4567789999999999999998753   358888888887777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+.+......     ......+||+.|+| |.  ...++.++||||+||++|||+||+.||.....              
T Consensus       155 a~~~~~~~~~-----~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~--------------  215 (288)
T d1uu3a_         155 AKVLSPESKQ-----ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE--------------  215 (288)
T ss_dssp             CEECC---------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             ceecccCCcc-----cccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH--------------
Confidence            9987643321     22345789999977 87  67889999999999999999999999975311              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                         .+.....+..... .|.   ...    +   .+.++...|++.+|++|||++|+...
T Consensus       216 ---~~~~~~i~~~~~~-~p~---~~s----~---~~~~li~~~L~~dP~~R~t~~e~~~~  261 (288)
T d1uu3a_         216 ---YLIFQKIIKLEYD-FPE---KFF----P---KARDLVEKLLVLDATKRLGCEEMEGY  261 (288)
T ss_dssp             ---HHHHHHHHTTCCC-CCT---TCC----H---HHHHHHHTTSCSSGGGSTTSGGGTCH
T ss_pred             ---HHHHHHHHcCCCC-CCc---cCC----H---HHHHHHHHHccCCHhHCcCHHHHcCC
Confidence               1122222222111 111   111    1   23456779999999999999997653

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-25  Score=218.53  Aligned_cols=164  Identities=15%  Similarity=0.166  Sum_probs=118.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|.+++...  ...+++..+..++.|+                  |+|||++.++.+||+|||+
T Consensus        79 ~~~~~~~lvmEy~~~g~L~~~~~~~--~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~  156 (288)
T d2jfla1          79 YYENNLWILIEFCAGGAVDAVMLEL--ERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGV  156 (288)
T ss_dssp             EETTEEEEEEECCTTEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             eeCCeEEEEEecCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechh
Confidence            3467789999999999999998643  2358998888888887                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc-------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      |+......       .......||+.|+| |+       ...++.++|||||||++|||+||+.||.+....        
T Consensus       157 a~~~~~~~-------~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~--------  221 (288)
T d2jfla1         157 SAKNTRTI-------QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPM--------  221 (288)
T ss_dssp             CEECHHHH-------HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGG--------
T ss_pred             hhccCCCc-------ccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHH--------
Confidence            97654321       12334789999977 86       245789999999999999999999999753221        


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                               +.+........ +........+       ..+.++...|++.+|++|||++|+++
T Consensus       222 ---------~~~~~i~~~~~-~~~~~~~~~s-------~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         222 ---------RVLLKIAKSEP-PTLAQPSRWS-------SNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             ---------GHHHHHHHSCC-CCCSSGGGSC-------HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ---------HHHHHHHcCCC-CCCCccccCC-------HHHHHHHHHHccCChhHCcCHHHHhc
Confidence                     11111121111 1111111111       12335667999999999999999875

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.90  E-value=1.7e-24  Score=211.12  Aligned_cols=164  Identities=23%  Similarity=0.290  Sum_probs=121.9

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..|+|||||++|||.++|...   ..+++.....++.|+                  |+|||++.++.+||+|||
T Consensus        79 ~~~~~~~~ivmE~~~~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG  155 (277)
T d1phka_          79 YETNTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFG  155 (277)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             cccCcceEEEEEcCCCchHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccch
Confidence            34577889999999999999999753   358999999998888                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--------cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHH
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--------VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHN  522 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--------~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~  522 (614)
                      +++......        ..+...||+.|+| |+        ...++.++||||+||+++||+||+.||.+...       
T Consensus       156 ~a~~~~~~~--------~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~-------  220 (277)
T d1phka_         156 FSCQLDPGE--------KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ-------  220 (277)
T ss_dssp             TCEECCTTC--------CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------
T ss_pred             heeEccCCC--------ceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCH-------
Confidence            999876532        2345789999977 76        23468899999999999999999999975321       


Q ss_pred             HHHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          523 FCEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       523 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                .+.....+.+.........+..++       .+.++..+|++.+|++|||+.||++
T Consensus       221 ----------~~~~~~i~~~~~~~~~~~~~~~s~-------~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         221 ----------MLMLRMIMSGNYQFGSPEWDDYSD-------TVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             ----------HHHHHHHHHTCCCCCTTTGGGSCH-------HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ----------HHHHHHHHhCCCCCCCcccccCCH-------HHHHHHHHHccCChhHCcCHHHHHc
Confidence                      122222222222211112122222       3345667999999999999999864

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.90  E-value=4.4e-24  Score=215.12  Aligned_cols=164  Identities=16%  Similarity=0.193  Sum_probs=121.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC--CCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY--DMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~--~~~~kl~Df  450 (614)
                      ..++..++|||||++|+|.+++...  ...+++.....|+.++                  |+|||++.  ++.+||+||
T Consensus        93 ~~~~~~~ivmE~~~gg~L~~~l~~~--~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DF  170 (350)
T d1koaa2          93 EDDNEMVMIYEFMSGGELFEKVADE--HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDF  170 (350)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHTCT--TSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCC
T ss_pred             EECCEEEEEEEcCCCCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeec
Confidence            3467789999999999999999653  2358999999888888                  99999964  578999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+|+.+....        ......||+.|+| |.  ...++.++||||+||++|||+||+.||.....            
T Consensus       171 G~a~~~~~~~--------~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~------------  230 (350)
T d1koaa2         171 GLTAHLDPKQ--------SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND------------  230 (350)
T ss_dssp             TTCEECCTTS--------CEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH------------
T ss_pred             chheeccccc--------ccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCH------------
Confidence            9998776542        2445789999988 87  67789999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+...........+...+...       ..+.++...|++.||++|||++|+++
T Consensus       231 -----~~~~~~i~~~~~~~~~~~~~~~s-------~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         231 -----DETLRNVKSCDWNMDDSAFSGIS-------EDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             -----HHHHHHHHHTCCCSCCGGGGGCC-------HHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             -----HHHHHHHHhCCCCCCcccccCCC-------HHHHHHHHHHccCChhHCcCHHHHhc
Confidence                 12222222222221111111111       12335667999999999999999986

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.2e-24  Score=215.45  Aligned_cols=157  Identities=19%  Similarity=0.198  Sum_probs=116.2

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .++..++|||||++|+|..++..+   ..++|..+..++.++                  |+|||++.++.+||+|||+|
T Consensus        86 ~~~~~~iv~E~~~~g~l~~~~~~~---~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a  162 (309)
T d1u5ra_          86 REHTAWLVMEYCLGSASDLLEVHK---KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSA  162 (309)
T ss_dssp             ETTEEEEEEECCSEEHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTC
T ss_pred             ECCEEEEEEEecCCCchHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccc
Confidence            456789999999999998776543   358999999988888                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc-----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW-----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~-----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      +.....           ...+||+.|+| |.     ...++.++|||||||++|||++|+.||.+...            
T Consensus       163 ~~~~~~-----------~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~------------  219 (309)
T d1u5ra_         163 SIMAPA-----------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA------------  219 (309)
T ss_dssp             BSSSSB-----------CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH------------
T ss_pred             cccCCC-----------CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCH------------
Confidence            865432           23679999987 86     24589999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+.......... +.. ..++    +   .+.++...|++.+|++|||++|+++
T Consensus       220 -----~~~~~~i~~~~~~~-~~~-~~~s----~---~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         220 -----MSALYHIAQNESPA-LQS-GHWS----E---YFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             -----HHHHHHHHHSCCCC-CSC-TTSC----H---HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -----HHHHHHHHhCCCCC-CCC-CCCC----H---HHHHHHHHHCcCChhHCcCHHHHHh
Confidence                 12222222222111 110 1111    1   2345667999999999999999975

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.89  E-value=7.5e-24  Score=213.62  Aligned_cols=164  Identities=16%  Similarity=0.177  Sum_probs=121.3

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC--CCCCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD--YDMTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld--~~~~~kl~Df  450 (614)
                      ..++..++|||||++|+|.+++...  ...+++.....|+.++                  |+|||++  .++.+||+||
T Consensus        96 ~~~~~~~ivmE~~~gg~L~~~~~~~--~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DF  173 (352)
T d1koba_          96 EDKYEMVLILEFLSGGELFDRIAAE--DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDF  173 (352)
T ss_dssp             ECSSEEEEEEECCCCCBHHHHTTCT--TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCC
T ss_pred             EECCEEEEEEEcCCCChHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeec
Confidence            4567789999999999999988653  3358998888888877                  9999998  5689999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+|+.+....        ......||+.|+| |+  ...++.++||||+||++|||+||+.||.+...            
T Consensus       174 Gla~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~------------  233 (352)
T d1koba_         174 GLATKLNPDE--------IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD------------  233 (352)
T ss_dssp             TTCEECCTTS--------CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH------------
T ss_pred             ccceecCCCC--------ceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH------------
Confidence            9999876542        2445789999977 77  66799999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+...............+.+.       ..+.++...|++.+|++|||+.|+++
T Consensus       234 -----~~~~~~i~~~~~~~~~~~~~~~s-------~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         234 -----LETLQNVKRCDWEFDEDAFSSVS-------PEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             -----HHHHHHHHHCCCCCCSSTTTTSC-------HHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             -----HHHHHHHHhCCCCCCcccccCCC-------HHHHHHHHHHccCChhHCcCHHHHhc
Confidence                 12222222222211111111111       12345677999999999999999976

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-24  Score=215.47  Aligned_cols=167  Identities=17%  Similarity=0.212  Sum_probs=118.4

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC---CCCeeecccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY---DMTAYVGDFG  451 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~---~~~~kl~DfG  451 (614)
                      +...|+|||||++|||.++|..++ ...+++.....|+.++                  |+|||+++   ++.+|++|||
T Consensus        81 ~~~~~ivmEy~~gg~L~~~i~~~~-~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG  159 (335)
T d2ozaa1          81 RKCLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFG  159 (335)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHSCS-CCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCT
T ss_pred             CCEEEEEEECCCCCcHHHHHHhcC-CCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccc
Confidence            466899999999999999997642 3569999888888888                  99999986   4579999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +|+.......        ....+||+.|+| |.  ...++.++||||+||++|||+||+.||.+......  .       
T Consensus       160 ~a~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~--~-------  222 (335)
T d2ozaa1         160 FAKETTSHNS--------LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI--S-------  222 (335)
T ss_dssp             TCEECCCCCC--------CCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC------------
T ss_pred             eeeeccCCCc--------cccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHH--H-------
Confidence            9987765432        345789999977 87  56799999999999999999999999975322110  0       


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           +.+...+.......|..  ..    .+....+.++...|++.+|++|||+.|+++
T Consensus       223 -----~~~~~~i~~~~~~~~~~--~~----~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         223 -----PGMKTRIRMGQYEFPNP--EW----SEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             ----------CCCSCSSSCCTT--HH----HHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             -----HHHHHHHhcCCCCCCCc--cc----ccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence                 00001111110000100  00    111223446677999999999999999976

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=5e-24  Score=208.65  Aligned_cols=170  Identities=19%  Similarity=0.342  Sum_probs=116.8

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...|+|||||++|+|.+++...   ..++|.+...|+.++                  |+|||++.++..+++|||.++.
T Consensus        84 ~~~~lvmE~~~g~~L~~~~~~~---~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~  160 (277)
T d1o6ya_          84 PLPYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA  160 (277)
T ss_dssp             EEEEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEE
T ss_pred             ceEEEEEECCCCCEehhhhccc---CCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhh
Confidence            3578999999999999998753   358999999988888                  9999999999999999999986


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCCh
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPESV  532 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~~  532 (614)
                      .......    .......+||+.|+| |.  ...++.++||||+||++|||+||+.||.....                 
T Consensus       161 ~~~~~~~----~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-----------------  219 (277)
T d1o6ya_         161 IADSGNS----VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP-----------------  219 (277)
T ss_dssp             CC--------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----------------
T ss_pred             hcccccc----ccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCH-----------------
Confidence            6543221    123445789999977 87  66789999999999999999999999975321                 


Q ss_pred             HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-CHHHHHHHHHHhH
Q 046036          533 MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-GVREMVMEMNVIK  594 (614)
Q Consensus       533 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-sm~ev~~~L~~i~  594 (614)
                      .+.+...+.....+.....+..+       ..+.++..+|++.+|++|| |++++.+.|.+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~s-------~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         220 VSVAYQHVREDPIPPSARHEGLS-------ADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             HHHHHHHHHCCCCCGGGTSSSCC-------HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCchhccCCC-------HHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence            12222222222111001111111       2334566799999999999 8999999998775

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.6e-24  Score=208.96  Aligned_cols=164  Identities=17%  Similarity=0.188  Sum_probs=119.2

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC----Ceee
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM----TAYV  447 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~----~~kl  447 (614)
                      +..++..++|||||++|+|.+++...   ..+++.....++.++                  |+|||++.++    .+|+
T Consensus        82 ~~~~~~~~iv~E~~~gg~L~~~i~~~---~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl  158 (293)
T d1jksa_          82 YENKTDVILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKI  158 (293)
T ss_dssp             EECSSEEEEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEE
T ss_pred             EEECCEEEEEEEcCCCccccchhccc---cccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEe
Confidence            34567889999999999999999753   358999888888877                  9999999876    4999


Q ss_pred             cccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHH
Q 046036          448 GDFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFC  524 (614)
Q Consensus       448 ~DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~  524 (614)
                      +|||+|+......        ......||+.|+| |.  ...++.++|||||||++|||+||+.||.+...         
T Consensus       159 ~DfG~a~~~~~~~--------~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~---------  221 (293)
T d1jksa_         159 IDFGLAHKIDFGN--------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---------  221 (293)
T ss_dssp             CCCTTCEECTTSC--------BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---------
T ss_pred             cchhhhhhcCCCc--------cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCH---------
Confidence            9999998775432        2344689999977 87  56789999999999999999999999975321         


Q ss_pred             HhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          525 EMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                              .+.+...........+...       ......+.++...|++.+|++|||++|+++
T Consensus       222 --------~~~~~~i~~~~~~~~~~~~-------~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         222 --------QETLANVSAVNYEFEDEYF-------SNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             --------HHHHHHHHTTCCCCCHHHH-------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             --------HHHHHHHHhcCCCCCchhc-------CCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                    1111111111111000000       011123345677999999999999999975

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=2.5e-24  Score=218.28  Aligned_cols=111  Identities=25%  Similarity=0.362  Sum_probs=93.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..|+|||||++|+|.++|...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus        77 ~~~~~~~ivmE~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGl  153 (364)
T d1omwa3          77 HTPDKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL  153 (364)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTT
T ss_pred             EECCEEEEEEEecCCCcHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeece
Confidence            3466789999999999999999753   357777777777776                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |+.+....         ....+||+.|+| |+   ...++.++||||+||++|||+||+.||...
T Consensus       154 a~~~~~~~---------~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  209 (364)
T d1omwa3         154 ACDFSKKK---------PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  209 (364)
T ss_dssp             CEECSSSC---------CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             eeecCCCc---------ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCC
Confidence            98765432         334689999977 86   346899999999999999999999999763

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.8e-23  Score=205.61  Aligned_cols=161  Identities=19%  Similarity=0.254  Sum_probs=116.5

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..|+|||||++|+|.+++...   ..++......++.++                  |+|||+|+++.+||+|||
T Consensus        74 ~~~~~~~~iv~ey~~gg~L~~~~~~~---~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG  150 (337)
T d1o6la_          74 FQTHDRLCFVMEYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFG  150 (337)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             eccccccccceeccCCCchhhhhhcc---cCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecc
Confidence            34567889999999999999999853   246776666666666                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhC
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMAL  528 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~  528 (614)
                      +|+......       ......+||+.|+| |+  ...++.++||||+||++|||+||+.||.....             
T Consensus       151 ~a~~~~~~~-------~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~-------------  210 (337)
T d1o6la_         151 LCKEGISDG-------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-------------  210 (337)
T ss_dssp             TCBCSCCTT-------CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-------------
T ss_pred             cccccccCC-------cccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCH-------------
Confidence            998765432       22445789999977 87  67899999999999999999999999975321             


Q ss_pred             CCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCC-----HHHHHH
Q 046036          529 PESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMG-----VREMVM  588 (614)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPs-----m~ev~~  588 (614)
                          .+.......... ..|..   .+    .   .+.++...|++.+|++||+     +.|+++
T Consensus       211 ----~~~~~~i~~~~~-~~p~~---~s----~---~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         211 ----ERLFELILMEEI-RFPRT---LS----P---EAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             ----HHHHHHHHHCCC-CCCTT---SC----H---HHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             ----HHHHHHHhcCCC-CCCcc---CC----H---HHHHHHHhhccCCchhhcccccccHHHHHc
Confidence                111111222211 11111   11    1   2234666899999999995     777765

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-23  Score=209.75  Aligned_cols=159  Identities=22%  Similarity=0.354  Sum_probs=116.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..|+|||||++|+|.++++..   ..++......++.++                  |+|||+++++.+|++|||+
T Consensus        73 ~~~~~~yivmEy~~~g~L~~~i~~~---~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~  149 (320)
T d1xjda_          73 QTKENLFFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGM  149 (320)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             ccCCceeEEEeecCCCcHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccch
Confidence            4567789999999999999999753   357777777777777                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      ++......       ...+...||+.|+| |+  ...++.++||||+||++|||+||+.||.+....             
T Consensus       150 a~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~-------------  209 (320)
T d1xjda_         150 CKENMLGD-------AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE-------------  209 (320)
T ss_dssp             CBCCCCTT-------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-------------
T ss_pred             hhhccccc-------ccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHH-------------
Confidence            98765432       22445789999977 77  678999999999999999999999999753211             


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHH-HHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVR-EMV  587 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~-ev~  587 (614)
                          +.......+. ...|.   ..+    .   .+.++..+|++.+|++||++. |++
T Consensus       210 ----~~~~~i~~~~-~~~p~---~~s----~---~~~dli~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         210 ----ELFHSIRMDN-PFYPR---WLE----K---EAKDLLVKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             ----HHHHHHHHCC-CCCCT---TSC----H---HHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             ----HHHHHHHcCC-CCCCc---cCC----H---HHHHHHHHhcccCCCCCcCHHHHHH
Confidence                1111111111 11111   111    1   233566699999999999985 665

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=9.5e-23  Score=202.58  Aligned_cols=157  Identities=21%  Similarity=0.326  Sum_probs=115.6

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||++|+|..++....   .+++.....++.++                  |+|||+|.++.+||+|||+
T Consensus        74 ~~~~~~~ivmE~~~gg~l~~~~~~~~---~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~  150 (316)
T d1fota_          74 QDAQQIFMIMDYIEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGF  150 (316)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSS
T ss_pred             eeCCeeeeEeeecCCccccccccccc---cccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCcc
Confidence            34678899999999999999997543   46676666666665                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+.....          ....+||+.|+| |.  ...++.++||||+||++|||+||+.||.....              
T Consensus       151 a~~~~~~----------~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~--------------  206 (316)
T d1fota_         151 AKYVPDV----------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT--------------  206 (316)
T ss_dssp             CEECSSC----------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH--------------
T ss_pred             ceEeccc----------cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH--------------
Confidence            9887543          234789999987 87  56789999999999999999999999975321              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCC-----CHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERM-----GVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RP-----sm~ev~~  588 (614)
                         .+.....+...... |.   ...    +   .+.++..+|++.+|.+||     |++|+++
T Consensus       207 ---~~~~~~i~~~~~~~-p~---~~s----~---~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         207 ---MKTYEKILNAELRF-PP---FFN----E---DVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             ---HHHHHHHHHCCCCC-CT---TSC----H---HHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             ---HHHHHHHHcCCCCC-CC---CCC----H---HHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence               12222222222211 11   111    1   233456688999999995     8888875

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-23  Score=207.28  Aligned_cols=114  Identities=19%  Similarity=0.143  Sum_probs=91.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +..++..++|||||++|++..+....   ..+++.....++.|+                  |+|||++.++.+||+|||
T Consensus        69 ~~~~~~~~ivmE~~~~~~~~~~~~~~---~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG  145 (299)
T d1ua2a_          69 FGHKSNISLVFDFMETDLEVIIKDNS---LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFG  145 (299)
T ss_dssp             ECCTTCCEEEEECCSEEHHHHHTTCC---SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCG
T ss_pred             eccCCceeehhhhhcchHHhhhhhcc---cCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCc
Confidence            34567789999999999888777643   346666666666666                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +|+.......       .....+||+.|+| |.   ...++.++|||||||++|||+||+.||...
T Consensus       146 ~a~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~  204 (299)
T d1ua2a_         146 LAKSFGSPNR-------AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD  204 (299)
T ss_dssp             GGSTTTSCCC-------CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccCCCcc-------cccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCC
Confidence            9987655432       2334689999977 86   346799999999999999999999999753

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-22  Score=201.81  Aligned_cols=164  Identities=17%  Similarity=0.157  Sum_probs=118.7

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC--CCeeeccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD--MTAYVGDF  450 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~--~~~kl~Df  450 (614)
                      ..++..|+|||||++|+|.+++...  ...+++.+...|+.++                  |+|||++.+  ..+|++||
T Consensus        71 ~~~~~~~lvmE~~~gg~L~~~i~~~--~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DF  148 (321)
T d1tkia_          71 ESMEELVMIFEFISGLDIFERINTS--AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEF  148 (321)
T ss_dssp             EETTEEEEEECCCCCCBHHHHHTSS--SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCC
T ss_pred             EECCEEEEEEecCCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEccc
Confidence            3466789999999999999999754  2358888888888777                  999999854  57999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      |+++......        ......||+.|+| |.  ...++.++||||+||++|||++|+.||.....            
T Consensus       149 G~~~~~~~~~--------~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~------------  208 (321)
T d1tkia_         149 GQARQLKPGD--------NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN------------  208 (321)
T ss_dssp             TTCEECCTTC--------EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH------------
T ss_pred             chhhccccCC--------cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH------------
Confidence            9998765432        2345689999977 66  67789999999999999999999999975321            


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                           .+.+...+...........+       +.-..+.++...|++.||++|||+.|+++
T Consensus       209 -----~~~~~~i~~~~~~~~~~~~~-------~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         209 -----QQIIENIMNAEYTFDEEAFK-------EISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             -----HHHHHHHHHTCCCCCHHHHT-------TSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -----HHHHHHHHhCCCCCChhhcc-------CCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                 12222222222111000000       11122345677999999999999999986

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.5e-22  Score=200.47  Aligned_cols=157  Identities=20%  Similarity=0.218  Sum_probs=117.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++||||+++|+|.+++...   ..+++.....++.++                  |+|||++.++.+||+|||+
T Consensus       111 ~~~~~~~~v~e~~~~g~l~~~l~~~---~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~  187 (350)
T d1rdqe_         111 KDNSNLYMVMEYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF  187 (350)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             ccccccccccccccccchhhhHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeecee
Confidence            3456789999999999999999753   358888888888877                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      |+.+...          ....+||+.|+| |.  ...++.++||||+||++|||+||+.||.....              
T Consensus       188 a~~~~~~----------~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~--------------  243 (350)
T d1rdqe_         188 AKRVKGR----------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP--------------  243 (350)
T ss_dssp             CEECSSC----------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--------------
T ss_pred             eeecccc----------cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCH--------------
Confidence            9977543          234789999987 87  66789999999999999999999999975311              


Q ss_pred             CChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCC-----CCHHHHHH
Q 046036          530 ESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNER-----MGVREMVM  588 (614)
Q Consensus       530 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~R-----Psm~ev~~  588 (614)
                         .+........... .|.   ...    .   .+.++...|++.||.+|     ||++|+++
T Consensus       244 ---~~~~~~i~~~~~~-~p~---~~s----~---~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         244 ---IQIYEKIVSGKVR-FPS---HFS----S---DLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             ---HHHHHHHHHCCCC-CCT---TCC----H---HHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             ---HHHHHHHhcCCCC-CCc---cCC----H---HHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence               1112222222211 111   111    1   23356668999999999     48888875

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.1e-22  Score=192.92  Aligned_cols=153  Identities=19%  Similarity=0.174  Sum_probs=111.9

Q ss_pred             CCCCCceeEEecccCC-CchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCC-CCeeecc
Q 046036          390 SGGNDFKALAFEFMPN-GSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYD-MTAYVGD  449 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~-GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~-~~~kl~D  449 (614)
                      +..++..++||||+.+ |++.+++...   ..+++.....++.++                  |+|||++.+ +.+|++|
T Consensus        78 ~~~~~~~~lv~e~~~~~~~l~~~~~~~---~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~D  154 (273)
T d1xwsa_          78 FERPDSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLID  154 (273)
T ss_dssp             EECSSEEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECC
T ss_pred             EeeCCeEEEEEEeccCcchHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECc
Confidence            3456778999999986 6888888643   358888888888877                  999999854 7999999


Q ss_pred             cccccccCCCCCCCCCCCcCcccccccccccc-cc--cCC-CCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHH
Q 046036          450 FGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VAR-YQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCE  525 (614)
Q Consensus       450 fGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~-~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~  525 (614)
                      ||+|+.....         ..+...||+.|+| |+  ... ++.++||||+||++|||+||+.||.....          
T Consensus       155 FG~a~~~~~~---------~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~----------  215 (273)
T d1xwsa_         155 FGSGALLKDT---------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE----------  215 (273)
T ss_dssp             CTTCEECCSS---------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH----------
T ss_pred             cccceecccc---------cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchH----------
Confidence            9999876443         2345789999987 87  333 46789999999999999999999974210          


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                                   .+.......+    ..+    +   .+.++..+|++.+|++|||++|+++
T Consensus       216 -------------i~~~~~~~~~----~~s----~---~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         216 -------------IIRGQVFFRQ----RVS----S---ECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             -------------HHHCCCCCSS----CCC----H---HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -------------HhhcccCCCC----CCC----H---HHHHHHHHHccCCHhHCcCHHHHhc
Confidence                         0111110000    011    1   2335667999999999999999875

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.8e-21  Score=192.58  Aligned_cols=179  Identities=16%  Similarity=0.181  Sum_probs=121.0

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeC---CCCCeeeccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLD---YDMTAYVGDF  450 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld---~~~~~kl~Df  450 (614)
                      .++..++||||+.+ ++.+.+...  ...+++..+..++.++                  |+|||++   .+..+|++||
T Consensus        74 ~~~~~~ivme~~~~-~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DF  150 (299)
T d1ckia_          74 EGDYNVMVMELLGP-SLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDF  150 (299)
T ss_dssp             ETTEEEEEEECCCC-BHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred             cCCEEEEEEEEcCC-chhhhhhhc--cCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeecc
Confidence            45678899999965 666655432  3468999999988888                  9999875   4567999999


Q ss_pred             ccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCch--HHHHHH
Q 046036          451 GLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLS--LHNFCE  525 (614)
Q Consensus       451 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~--l~~~~~  525 (614)
                      |+|+.+..................||+.|+| |.  ...++.++|||||||+++||+||+.||.........  ...+..
T Consensus       151 G~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~  230 (299)
T d1ckia_         151 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISE  230 (299)
T ss_dssp             SSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHH
T ss_pred             CcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhc
Confidence            9999876554332222223445789999987 77  667899999999999999999999999764332111  111111


Q ss_pred             hhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHH
Q 046036          526 MALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKE  595 (614)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~  595 (614)
                      ...+...     +.+..                 .....+.++...|++.+|++||+++++.+.|+.+..
T Consensus       231 ~~~~~~~-----~~~~~-----------------~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         231 KKMSTPI-----EVLCK-----------------GYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             HHHHSCH-----HHHTT-----------------TSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHH
T ss_pred             ccCCCCh-----hHhcc-----------------CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHH
Confidence            0000000     00111                 111234567779999999999999999988887643

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.5e-22  Score=197.69  Aligned_cols=111  Identities=18%  Similarity=0.188  Sum_probs=91.3

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ....++|||||++|++.......  ...+++.....++.++                  |+|||+++++.+||+|||+++
T Consensus        87 ~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~  164 (305)
T d1blxa_          87 ETKLTLVFEHVDQDLTTYLDKVP--EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR  164 (305)
T ss_dssp             EEEEEEEEECCSCBHHHHHHHSC--TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCC
T ss_pred             CceEEEEEEeccCCchhhhhhcc--CCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhh
Confidence            45679999999998876555432  3458888887887777                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      .....        .......||+.|+| |.  ...++.++||||+||++|||+||+.||...
T Consensus       165 ~~~~~--------~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~  218 (305)
T d1blxa_         165 IYSFQ--------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  218 (305)
T ss_dssp             CCCGG--------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hhccc--------ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC
Confidence            65433        22445789999977 87  778999999999999999999999999764

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.83  E-value=2.1e-21  Score=191.09  Aligned_cols=181  Identities=15%  Similarity=0.143  Sum_probs=124.5

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCC-----CCCeeec
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDY-----DMTAYVG  448 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~-----~~~~kl~  448 (614)
                      .+...++||||+ +|+|.+++...  ...+++.++..++.++                  |+|||++.     ++.+|++
T Consensus        72 ~~~~~~~vme~~-~~~l~~~~~~~--~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~  148 (293)
T d1csna_          72 EGLHNVLVIDLL-GPSLEDLLDLC--GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVV  148 (293)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             cCCccEEEEEec-CCCHHHHHHhh--ccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEc
Confidence            356679999999 57999998753  3458899888888877                  99999975     5679999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCch--HHHH
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLS--LHNF  523 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~--l~~~  523 (614)
                      |||+|+...................+||+.||| |.  ...++.++|||||||+++||+||+.||.........  ....
T Consensus       149 DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i  228 (293)
T d1csna_         149 DFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERI  228 (293)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHH
T ss_pred             ccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHH
Confidence            999999876543322122223445789999988 87  667999999999999999999999999754322111  0000


Q ss_pred             HHhhCCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHHHHHhHHHh
Q 046036          524 CEMALPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVMEMNVIKEVL  597 (614)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~i~~~~  597 (614)
                      .........     +.+..                 .....+.++...|++.+|++||+.+.+.+.++++.+..
T Consensus       229 ~~~~~~~~~-----~~l~~-----------------~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~~  280 (293)
T d1csna_         229 GEKKQSTPL-----RELCA-----------------GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL  280 (293)
T ss_dssp             HHHHHHSCH-----HHHTT-----------------TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HhccCCCCh-----HHhcC-----------------CCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHc
Confidence            000000000     00100                 11123445666899999999999999998888775543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.3e-22  Score=195.14  Aligned_cols=187  Identities=17%  Similarity=0.124  Sum_probs=117.0

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++|||||.+|.+......  ....+++.....++.++                  |+|||++.++.+|++|||+
T Consensus        71 ~~~~~~~iv~e~~~~~~~~~~~~~--~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~  148 (298)
T d1gz8a_          71 HTENKLYLVFEFLHQDLKKFMDAS--ALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGL  148 (298)
T ss_dssp             EETTEEEEEEECCSEEHHHHHHHT--TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTH
T ss_pred             ccccceeEEEeecCCchhhhhhhh--cccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCc
Confidence            345678999999987544433332  23469999999998888                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh-h
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM-A  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~-~  527 (614)
                      |+......       .......||+.|+| |.   ...++.++||||+||++|||++|+.||........ +...... .
T Consensus       149 a~~~~~~~-------~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~-~~~i~~~~~  220 (298)
T d1gz8a_         149 ARAFGVPV-------RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ-LFRIFRTLG  220 (298)
T ss_dssp             HHHHCCCS-------BCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHC
T ss_pred             ceeccCCc-------ccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHH-HHHHHHhcC
Confidence            98775432       22445689999977 75   44568899999999999999999999975422111 1111111 1


Q ss_pred             CCCC-hHHHHHHHHhcCcCCCCC-CchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          528 LPES-VMELVYSRLLQGVDKDAE-DEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       528 ~~~~-~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      .+.. ....+. .........+. .+..........-..+.++...|++.+|++|||+.|+++
T Consensus       221 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         221 TPDEVVWPGVT-SMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             CCCTTTSTTGG-GSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCchhhccccc-cccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            1111 000000 00000000000 000011111111123445677999999999999999975

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-21  Score=196.52  Aligned_cols=192  Identities=18%  Similarity=0.133  Sum_probs=117.1

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeecccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFGLA  453 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfGla  453 (614)
                      ..+.++|||||++|.+....+.......+++..+..++.++                  |+|||++.++ .+||+|||++
T Consensus        91 ~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a  170 (350)
T d1q5ka_          91 EVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA  170 (350)
T ss_dssp             CCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTC
T ss_pred             ceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccch
Confidence            44578999999987554444322234468998888888877                  9999999775 8999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALP  529 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~  529 (614)
                      +.......        ....+||+.|+| |.   ...++.++||||+||+++||++|+.||...... ..+....+....
T Consensus       171 ~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~-~~l~~i~~~~g~  241 (350)
T d1q5ka_         171 KQLVRGEP--------NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIKVLGT  241 (350)
T ss_dssp             EECCTTSC--------CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHHCC
T ss_pred             hhccCCcc--------cccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHH-HHHHHHHHHhCC
Confidence            87755432        234678999966 65   457899999999999999999999999753221 112222221111


Q ss_pred             CChHHHHHHHHhc---CcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH--HHHHhH
Q 046036          530 ESVMELVYSRLLQ---GVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM--EMNVIK  594 (614)
Q Consensus       530 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~--~L~~i~  594 (614)
                      . ..+.+......   ..-+.....+.........-..+.++..+|+..||++|||++|+++  .+++++
T Consensus       242 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         242 P-TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             C-CHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             C-hHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence            1 11111111100   0000000000000000001112345667899999999999999985  344443

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.82  E-value=1.3e-21  Score=192.40  Aligned_cols=113  Identities=18%  Similarity=0.231  Sum_probs=89.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ..++..++||||+.+|.+..+....   ..++......|+.++                  |+|||++.++.+|++|||+
T Consensus        70 ~~~~~~~i~~e~~~~~~~~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~  146 (286)
T d1ob3a_          70 HTKKRLVLVFEHLDQDLKKLLDVCE---GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGL  146 (286)
T ss_dssp             ECSSCEEEEEECCSEEHHHHHHTST---TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTH
T ss_pred             ccCCceeEEEEeehhhhHHHHHhhc---CCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEeccccc
Confidence            4567789999999998888777643   458999988888888                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      +........       ......|++.|+| |.   ...++.++||||+||+++||++|+.||.+.
T Consensus       147 a~~~~~~~~-------~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~  204 (286)
T d1ob3a_         147 ARAFGIPVR-------KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (286)
T ss_dssp             HHHHCC----------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ceecccCcc-------ccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCC
Confidence            987654321       2334578999976 76   456789999999999999999999999764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.2e-20  Score=178.81  Aligned_cols=207  Identities=23%  Similarity=0.313  Sum_probs=134.8

Q ss_pred             CCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCc
Q 046036           36 KLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQK  115 (614)
Q Consensus        36 ~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  115 (614)
                      ++..++++.+++++..+     +..+. +|+.|++.+|.++ .++ .+..+++|++|++++|++++..|  +..+++|+.
T Consensus        20 ~~~~~~l~~~~~~d~~~-----~~~l~-~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~   89 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTVT-----QADLD-GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITE   89 (227)
T ss_dssp             HHHHHHTTCSSTTSEEC-----HHHHH-TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCE
T ss_pred             HHHHHHhCCCCcCCcCC-----HHHcC-CcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeecccc--ccccccccc
Confidence            33445556666654332     34454 6666777777666 333 46667777777777777664332  566666665


Q ss_pred             ccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCC
Q 046036          116 LNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLS  195 (614)
Q Consensus       116 L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  195 (614)
                      ++            +++|.++. + ..+..+++|+.+++++|...+.  ..+...+.+..+.++.+.+....  .+..++
T Consensus        90 l~------------~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~  151 (227)
T d1h6ua2          90 LE------------LSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLT  151 (227)
T ss_dssp             EE------------CCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCT
T ss_pred             cc------------cccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhcccc
Confidence            55            66666652 2 2466777777777777766532  22455667777777777776332  356677


Q ss_pred             CCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECc
Q 046036          196 NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLS  275 (614)
Q Consensus       196 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls  275 (614)
                      +|+.|++++|.+++..  .+.++++|+.|+|++|++++ ++ .++.+++|++|+|++|++++..  .+..+++|+.|+++
T Consensus       152 ~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            7888888877776432  36777888888888888774 33 3778888888888888888543  27788888888886


Q ss_pred             C
Q 046036          276 F  276 (614)
Q Consensus       276 ~  276 (614)
                      +
T Consensus       226 n  226 (227)
T d1h6ua2         226 N  226 (227)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-20  Score=188.55  Aligned_cols=186  Identities=16%  Similarity=0.115  Sum_probs=113.8

Q ss_pred             CCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccccc
Q 046036          393 NDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLAR  454 (614)
Q Consensus       393 ~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~  454 (614)
                      ++..++|||||++|.+..+...   ...++......|+.|+                  |+|||++.++.+|++|||+++
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~---~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNV---LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCT---TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CceEEEEEeccCCCccchhhhc---ccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceee
Confidence            4567999999999888776653   2356777777777766                  999999999999999999998


Q ss_pred             ccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCc-hHHHHHHhhCC
Q 046036          455 FLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCL-SLHNFCEMALP  529 (614)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~-~l~~~~~~~~~  529 (614)
                      ........   ........+||++|+| |.   ...++.++||||+||+++||++|+.||........ ..........+
T Consensus       166 ~~~~~~~~---~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~  242 (318)
T d3blha1         166 AFSLAKNS---QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  242 (318)
T ss_dssp             ECCC--------CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             eccccccc---ccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            76543221   0112234679999977 76   34688999999999999999999999975322111 01111111111


Q ss_pred             CCh-----HHHHHHHHhcCcCCCCCCchhhHHHHH--HHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          530 ESV-----MELVYSRLLQGVDKDAEDEPCMKAKIR--ECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       530 ~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                      ...     .......+......    +......+.  ..-..+.++..+|++.||++|||++|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         243 PEVWPNVDNYELYEKLELVKGQ----KRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             TTTSTTCCCC-------CCSSC----CBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hhhccccchhhhhhhhcccccc----cccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence            110     00111111111111    111111111  11123446778999999999999999884

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.4e-19  Score=171.26  Aligned_cols=208  Identities=20%  Similarity=0.282  Sum_probs=138.2

Q ss_pred             CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCC
Q 046036           11 FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLI   90 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~   90 (614)
                      .++..++++.+++++.+  .+..+.+|++|++++|+|+. ++ .   +.+++ +|++|++++|++++..|  +..+++|+
T Consensus        19 ~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~---l~~l~-~L~~L~ls~n~i~~~~~--l~~l~~l~   88 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-G---VQYLN-NLIGLELKDNQITDLAP--LKNLTKIT   88 (227)
T ss_dssp             HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-T---GGGCT-TCCEEECCSSCCCCCGG--GTTCCSCC
T ss_pred             HHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-h---HhcCC-CCcEeecCCceeecccc--cccccccc
Confidence            33445566666666543  34566777788888777773 22 2   56666 77778888877764333  67777788


Q ss_pred             EEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCC
Q 046036           91 QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLF  170 (614)
Q Consensus        91 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  170 (614)
                      +|++++|.++. ++ .+.++++|+.++            +++|...+.  ..+...+.++.+.++++.+...  ..+..+
T Consensus        89 ~l~~~~n~~~~-i~-~l~~l~~L~~l~------------l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~  150 (227)
T d1h6ua2          89 ELELSGNPLKN-VS-AIAGLQSIKTLD------------LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGL  150 (227)
T ss_dssp             EEECCSCCCSC-CG-GGTTCTTCCEEE------------CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             ccccccccccc-cc-cccccccccccc------------ccccccccc--chhccccchhhhhchhhhhchh--hhhccc
Confidence            88887777763 32 456666666665            777776633  2356677777777777777632  235566


Q ss_pred             CCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEc
Q 046036          171 STLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNL  250 (614)
Q Consensus       171 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  250 (614)
                      ++|+.|++++|.++...  .+.++++|+.|+|++|++++..  .+..+++|++|+|++|++++. + .++++++|+.|++
T Consensus       151 ~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~l  224 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTL  224 (227)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEE
T ss_pred             cccccccccccccccch--hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEe
Confidence            77778888777776332  3677777888888887776532  367777788888888877743 3 2677777777777


Q ss_pred             cC
Q 046036          251 SH  252 (614)
Q Consensus       251 s~  252 (614)
                      ++
T Consensus       225 sn  226 (227)
T d1h6ua2         225 TN  226 (227)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.6e-21  Score=189.34  Aligned_cols=165  Identities=21%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             CCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeeccccc
Q 046036          391 GGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGL  452 (614)
Q Consensus       391 ~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGl  452 (614)
                      ...+..++|||||.+|+|.+++...+   .+.......++.++                  |+|||+|.++.+||+|||+
T Consensus        99 ~~~~~~~~v~e~~~~~~L~~~i~~~~---~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~  175 (322)
T d1vzoa_          99 QTETKLHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGL  175 (322)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             ccCCceeeeeecccccHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccc
Confidence            34567899999999999999997543   34444445455444                  9999999999999999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc----cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhh
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW----VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMA  527 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~----~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~  527 (614)
                      ++.+.....      .......|++.|++ |.    ...++.++||||+||++|||+||+.||.........        
T Consensus       176 a~~~~~~~~------~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~--------  241 (322)
T d1vzoa_         176 SKEFVADET------ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQ--------  241 (322)
T ss_dssp             EEECCGGGG------GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCH--------
T ss_pred             hhhhccccc------ccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHH--------
Confidence            987654322      22345689999976 65    235788999999999999999999999764322111        


Q ss_pred             CCCChHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCC-----HHHHHH
Q 046036          528 LPESVMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMG-----VREMVM  588 (614)
Q Consensus       528 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPs-----m~ev~~  588 (614)
                           ..+........ ...|.          +.-..+.++...|++.+|++|||     ++|+++
T Consensus       242 -----~~i~~~~~~~~-~~~~~----------~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         242 -----AEISRRILKSE-PPYPQ----------EMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             -----HHHHHHHHHCC-CCCCT----------TSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             -----HHHHHhcccCC-CCCcc----------cCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence                 11111111111 11111          11122334566999999999995     778764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.3e-19  Score=171.58  Aligned_cols=218  Identities=14%  Similarity=0.046  Sum_probs=131.1

Q ss_pred             CeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccC-CCCCcCCCCCCEE
Q 046036           14 QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDI-PAGIPKYFNLIQL   92 (614)
Q Consensus        14 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L   92 (614)
                      +.++.+++.++ .+|+.+.  +++++|+|++|+|+...+..   |.+++ +|++|+|++|.+...+ +..|..++++++|
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~---f~~l~-~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGA---FSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTT---TTTCT-TCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhH---hhccc-hhhhhhhccccccceeeccccccccccccc
Confidence            46666666666 5555443  35677777777776444444   55665 6777777777665433 3356667777777


Q ss_pred             ecc-CCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccc-hhhhccCCCCeeecccccCCCCCCCCCCCC
Q 046036           93 GLD-RNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP-ESLENLTSLQILNLSCNHLGGSIPKPSGLF  170 (614)
Q Consensus        93 ~L~-~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  170 (614)
                      .+. .|.+....+..|.++++|+.|+            +++|++....+ ..+..+..+..+..+++.+....+..+..+
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~------------l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~  151 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLL------------ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL  151 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEE------------EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred             cccccccccccccccccccccccccc------------cchhhhcccccccccccccccccccccccccccccccccccc
Confidence            664 3566656666667777777666            77776653322 223345555555556666664444555544


Q ss_pred             C-CCCEEEcCCCCCccCCcccccCCCCCce-eccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceE
Q 046036          171 S-TLSSIDFAHNNFNGSLPLEVGSLSNTQE-LDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDL  248 (614)
Q Consensus       171 ~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  248 (614)
                      + .++.|++++|+++...+..+ ...+++. +++++|+++...+..|.++++|++|+|++|+|+...+..|.+++.|+.+
T Consensus       152 ~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         152 SFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             BSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             cccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            3 56677777777764333333 3344433 3566667765555567777777777777777775445556666666665


Q ss_pred             Ecc
Q 046036          249 NLS  251 (614)
Q Consensus       249 ~Ls  251 (614)
                      ++.
T Consensus       231 ~~~  233 (242)
T d1xwdc1         231 STY  233 (242)
T ss_dssp             SEE
T ss_pred             cCC
Confidence            553

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-20  Score=190.17  Aligned_cols=181  Identities=17%  Similarity=0.139  Sum_probs=115.6

Q ss_pred             eEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccccCC
Q 046036          397 ALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARFLPT  458 (614)
Q Consensus       397 ~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~~~~  458 (614)
                      +.++||+.+|||.+++...    .+++.....++.++                  |+|||++.++.+||+|||+|+....
T Consensus        86 ~~l~~~~~~g~L~~~l~~~----~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~  161 (345)
T d1pmea_          86 VYLVTHLMGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADP  161 (345)
T ss_dssp             EEEEEECCCEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCG
T ss_pred             EEEEEeecCCchhhhhhcC----CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccC
Confidence            4555677799999999643    48999888888888                  9999999999999999999987654


Q ss_pred             CCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHh-hCCCC--
Q 046036          459 NVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEM-ALPES--  531 (614)
Q Consensus       459 ~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~-~~~~~--  531 (614)
                      ....    .......+||+.|+| |.   ...++.++||||+||+++||++|+.||......... ...... ..+..  
T Consensus       162 ~~~~----~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~-~~~~~~~~~~~~~~  236 (345)
T d1pmea_         162 DHDH----TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQL-NHILGILGSPSQED  236 (345)
T ss_dssp             GGCB----CCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHHHHCSCCHHH
T ss_pred             CCcc----ceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHH-HHHhhhccCCChhh
Confidence            3221    122345789999977 76   456788999999999999999999999764321111 111111 11110  


Q ss_pred             ----hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          532 ----VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       532 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                          ...............   ....+.......-..+.++...|++.||++|||+.|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         237 LNCIINLKARNYLLSLPHK---NKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHTCCCHHHHHHHHTSCCC---CCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhhhhhcccccCCcc---CCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                000011111111100   0111111111111234567789999999999999999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=171.50  Aligned_cols=220  Identities=16%  Similarity=0.080  Sum_probs=162.1

Q ss_pred             CcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccC-CccccCCCCCCc
Q 046036           37 LTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSI-PFSIGKLQNLQK  115 (614)
Q Consensus        37 L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~  115 (614)
                      .+.++.++++++ .+|+.+      ++++++|+|++|+|+...+..|.++++|++|+|++|.+...+ +..|.+++++++
T Consensus        10 ~~~i~c~~~~l~-~iP~~l------~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~   82 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   82 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCS------CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred             CCEEEEeCCCCC-CcCCCC------CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccc
Confidence            367888888888 677663      237888999999998655667888999999999999887654 456788888887


Q ss_pred             ccccccccccceEec-CCCccccccchhhhccCCCCeeecccccCCCCCCC-CCCCCCCCCEEEcCCCCCccCCcccccC
Q 046036          116 LNPLATSLYSFQLNL-AENNLTGNIPESLENLTSLQILNLSCNHLGGSIPK-PSGLFSTLSSIDFAHNNFNGSLPLEVGS  193 (614)
Q Consensus       116 L~l~~~~~~l~~L~L-~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  193 (614)
                      +.            + ..|++....+..|.++++|++|++++|.+....+. .+..+..+..+..+++.+....+..|..
T Consensus        83 l~------------~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~  150 (242)
T d1xwdc1          83 IR------------IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG  150 (242)
T ss_dssp             EE------------EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred             cc------------ccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccc
Confidence            76            4 35677777778889999999999999988743222 2334556666677777887666666666


Q ss_pred             CC-CCceeccCCccCCCCccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEE
Q 046036          194 LS-NTQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENL  272 (614)
Q Consensus       194 l~-~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  272 (614)
                      ++ .++.|++++|+++...+..|.....++.+++++|.++...+..|.++++|+.|+|++|+|+...+..|..+++|+.+
T Consensus       151 ~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             SBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            54 78889999999986655555444334455678888885555668889999999999999986666667777777766


Q ss_pred             ECc
Q 046036          273 NLS  275 (614)
Q Consensus       273 ~ls  275 (614)
                      ++.
T Consensus       231 ~~~  233 (242)
T d1xwdc1         231 STY  233 (242)
T ss_dssp             SEE
T ss_pred             cCC
Confidence            554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=7.9e-20  Score=168.04  Aligned_cols=172  Identities=21%  Similarity=0.224  Sum_probs=96.9

Q ss_pred             cEEecccccCcccCCcChhhhccccccccEEEccCCcccccC-CCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcc
Q 046036           38 TYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDI-PAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKL  116 (614)
Q Consensus        38 ~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  116 (614)
                      ++++.++|+++ .+|..+      ++++++|+|++|+|++.+ +..|.++++|++|+|++|.+....+..|..+++|++|
T Consensus        11 ~~v~Cs~~~L~-~iP~~l------p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CEEEEeCCCcC-ccCCCC------CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccccee
Confidence            34555555555 444431      125555566666554322 3344555566666666666655555555555555555


Q ss_pred             cccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCC
Q 046036          117 NPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSN  196 (614)
Q Consensus       117 ~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  196 (614)
                      +            |++|+|+...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+........ -...
T Consensus        84 ~------------Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~  150 (192)
T d1w8aa_          84 Q------------LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEW  150 (192)
T ss_dssp             E------------CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHH
T ss_pred             e------------eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-Hhhh
Confidence            5            66666665555556666666666666666665555566666666666666666654322111 1123


Q ss_pred             CceeccCCccCCCCccccccCcccchHHhccCcccc
Q 046036          197 TQELDFSEHMLSDEIPITLGNRSKFEHLLLGGNMFQ  232 (614)
Q Consensus       197 L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  232 (614)
                      ++.+.+..|.++...|..+   ..++.++|+.|.+.
T Consensus       151 l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         151 LRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             HHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             hhhhcccCCCeEeCCChhh---cCCEeeecCHhhCc
Confidence            5556666676665555443   44566777777775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=3.8e-19  Score=163.40  Aligned_cols=173  Identities=21%  Similarity=0.273  Sum_probs=134.5

Q ss_pred             ccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCccc-CCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           65 LRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGS-IPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        65 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      .++++.++|+++ .+|..+.  +++++|+|++|+|++. .+..|.++++|+.|+            |++|+++...+..|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~------------L~~N~i~~~~~~~~   74 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE------------LKRNQLTGIEPNAF   74 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEE------------CCSSCCCCBCTTTT
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeee------------cccccccccccccc
Confidence            467999999998 7787664  5899999999999864 456778899998887            99999998888899


Q ss_pred             hccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchH
Q 046036          144 ENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEH  223 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  223 (614)
                      ..+++|++|+|++|+|+...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.......+ -...++.
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~  153 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRK  153 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHH
T ss_pred             ccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-Hhhhhhh
Confidence            999999999999999997778888999999999999999998888888999999999999998865332211 1234566


Q ss_pred             HhccCccccccCCccccCCCccceEEccCCcCc
Q 046036          224 LLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLS  256 (614)
Q Consensus       224 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  256 (614)
                      +.+..|.++...|..   +..++.++|+.|.+.
T Consensus       154 ~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         154 KSLNGGAARCGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             HCCSGGGCBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred             hcccCCCeEeCCChh---hcCCEeeecCHhhCc
Confidence            666666666555543   334445566666554

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-19  Score=182.13  Aligned_cols=177  Identities=16%  Similarity=0.139  Sum_probs=115.0

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      .+.++||||| +++|..+.+..    .+++.....++.++                  |+|||++.++.+|++|||+|+.
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~  170 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  170 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             ceEEEEEecc-cccHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceec
Confidence            4579999999 45888877542    48999888888887                  9999999999999999999987


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC-
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE-  530 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~-  530 (614)
                      ....          .+...||+.|+| |.   ...++.++||||+||+++||++|+.||...... ..+.......... 
T Consensus       171 ~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~-~~~~~~~~~~~~~~  239 (346)
T d1cm8a_         171 ADSE----------MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL-DQLKEIMKVTGTPP  239 (346)
T ss_dssp             CCSS----------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCC
T ss_pred             cCCc----------cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChH-HHHHHHHhccCCCc
Confidence            6543          334689999977 76   356789999999999999999999999764221 1111211111111 


Q ss_pred             -Ch-----HHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHHH
Q 046036          531 -SV-----MELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVME  589 (614)
Q Consensus       531 -~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~  589 (614)
                       ..     ......................   ....-..+.++...|+..||++|||+.|+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         240 AEFVQRLQSDEAKNYMKGLPELEKKDFASI---LTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HHHHHTCSCHHHHHHHHHSCCCCCCCGGGT---CTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHhhhcchhhhhhhccCCcccccchHHh---ccCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence             00     0111111111000000000000   00111123456779999999999999999863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1.1e-17  Score=168.87  Aligned_cols=257  Identities=21%  Similarity=0.210  Sum_probs=158.5

Q ss_pred             CCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCC
Q 046036           11 FRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLI   90 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~   90 (614)
                      .++++|||++|.++ .+|+.   .++|++|+|++|+|+ .+|..   +   . +|+.|++++|+++ .++. +  .+.|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~---~-~L~~L~l~~n~l~-~l~~-l--p~~L~  101 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---P---Q-SLKSLLVDNNNLK-ALSD-L--PPLLE  101 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---C---T-TCCEEECCSSCCS-CCCS-C--CTTCC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---h---h-hhhhhhhhhcccc-hhhh-h--ccccc
Confidence            36889999999988 57753   467889999999998 66765   2   2 7788888888886 4443 2  13688


Q ss_pred             EEeccCCcCcccCCccccCCCCCCccccccccc--------ccceEecCCCccccccchhhhccCCCCeeecccccCCCC
Q 046036           91 QLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSL--------YSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGS  162 (614)
Q Consensus        91 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~--------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  162 (614)
                      +|++++|.++ .+|. ++.+++|+.|++....+        .+..+.+.++...  ....+..++.++.|++++|.+...
T Consensus       102 ~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccccccc-cccc-hhhhccceeeccccccccccccccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            8888888887 4553 57788888887622222        3344555544443  233456667777777777665421


Q ss_pred             C------------------CCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcc-----
Q 046036          163 I------------------PKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRS-----  219 (614)
Q Consensus       163 ~------------------p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~-----  219 (614)
                      .                  ...+..++.|+.+++++|... .++.   ...++..+.+..|.+... +.....+.     
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~  252 (353)
T d1jl5a_         178 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTDL-PELPQSLTFLDVS  252 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSCC-CCCCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccc---cccccccccccccccccc-ccccccccccccc
Confidence            1                  112455678888888888776 3332   244566666666666432 11111111     


Q ss_pred             --------c----chHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccCCCcc
Q 046036          220 --------K----FEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQLPSMS  287 (614)
Q Consensus       220 --------~----L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~  287 (614)
                              .    ....++..|.+.    .....+++|++|+|++|+|+ .+|.   .+++|+.|++++|+|+. +|.  
T Consensus       253 ~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~--  321 (353)
T d1jl5a_         253 ENIFSGLSELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPE--  321 (353)
T ss_dssp             SSCCSEESCCCTTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC--
T ss_pred             cccccccccccchhcccccccCccc----cccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCc-ccc--
Confidence                    0    111122222222    22234577888888888887 4554   35778888888888874 443  


Q ss_pred             ccCCCceEEEecCCCc
Q 046036          288 VFTNTSVISIVGNGKL  303 (614)
Q Consensus       288 ~~~~l~~~~~~~N~~~  303 (614)
                      .+.+++.+++.+|+..
T Consensus       322 ~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         322 LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCTTCCEEECCSSCCS
T ss_pred             ccCCCCEEECcCCcCC
Confidence            2457788888888743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=4.5e-17  Score=164.22  Aligned_cols=259  Identities=22%  Similarity=0.274  Sum_probs=170.1

Q ss_pred             CCCccccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCC
Q 046036            2 NVPQEIGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPA   81 (614)
Q Consensus         2 ~ip~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~   81 (614)
                      +||+.   .++|++|+|++|+|+ .+|+.+   .+|+.|++++|+++ .++       .++..|++|++++|.++ .+|.
T Consensus        52 ~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~-------~lp~~L~~L~L~~n~l~-~lp~  115 (353)
T d1jl5a_          52 SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALS-------DLPPLLEYLGVSNNQLE-KLPE  115 (353)
T ss_dssp             CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCC-------SCCTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhh-------hhccccccccccccccc-cccc
Confidence            56753   578999999999999 678654   57899999999998 333       23447999999999998 5664


Q ss_pred             CCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccc---cc----cccceEecCCCccccc----------------
Q 046036           82 GIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLA---TS----LYSFQLNLAENNLTGN----------------  138 (614)
Q Consensus        82 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~---~~----~~l~~L~L~~N~l~~~----------------  138 (614)
                       ++.+++|++|++++|.+.. .+.....+..+...+...   ..    ..++.+.+++|.+...                
T Consensus       116 -~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~  193 (353)
T d1jl5a_         116 -LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI  193 (353)
T ss_dssp             -CTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC
T ss_pred             -hhhhccceeeccccccccc-cccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccc
Confidence             6889999999999999873 333333332222111100   00    0333444544443311                


Q ss_pred             --cchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCC-------
Q 046036          139 --IPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD-------  209 (614)
Q Consensus       139 --~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~-------  209 (614)
                        ....+..++.|+.+++++|... .++.   ...++..+.+.+|.+... +..   ...+...++..|.+.+       
T Consensus       194 ~~~~~~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~~-~~~---~~~l~~~~~~~~~~~~l~~l~~~  265 (353)
T d1jl5a_         194 LEELPELQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSELPPN  265 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESCCCTT
T ss_pred             cccccccccccccccccccccccc-cccc---cccccccccccccccccc-ccc---cccccccccccccccccccccch
Confidence              1223567899999999999877 3443   345788888888888632 222   2223333333222211       


Q ss_pred             ---------CccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCc
Q 046036          210 ---------EIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFE  280 (614)
Q Consensus       210 ---------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~  280 (614)
                               .++.....+++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|++++|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             hcccccccCccccccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence                     11122334678999999999998 56753   678999999999999 56653   568999999999998


Q ss_pred             ccCCCccccCCCceEEE
Q 046036          281 GQLPSMSVFTNTSVISI  297 (614)
Q Consensus       281 ~~~p~~~~~~~l~~~~~  297 (614)
                      . +|..  ...++.+.+
T Consensus       338 ~-lp~~--~~~L~~L~~  351 (353)
T d1jl5a_         338 E-FPDI--PESVEDLRM  351 (353)
T ss_dssp             S-CCCC--CTTCCEEEC
T ss_pred             C-CCcc--ccccCeeEC
Confidence            5 4432  234555443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.4e-20  Score=179.90  Aligned_cols=113  Identities=21%  Similarity=0.237  Sum_probs=90.3

Q ss_pred             CCCCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccc
Q 046036          390 SGGNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFG  451 (614)
Q Consensus       390 ~~~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfG  451 (614)
                      +...+..++||||+.+|++..++...   ..+++..+..++.++                  |+|||++.++.+|++|||
T Consensus        70 ~~~~~~~~iv~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG  146 (292)
T d1unla_          70 LHSDKKLTLVFEFCDQDLKKYFDSCN---GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFG  146 (292)
T ss_dssp             EECSSEEEEEEECCSEEHHHHHHHTT---TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCT
T ss_pred             cccccceeEEeeeccccccccccccc---cccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecc
Confidence            34567789999999999999988743   357787777777777                  999999999999999999


Q ss_pred             cccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCc
Q 046036          452 LARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDE  512 (614)
Q Consensus       452 la~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~  512 (614)
                      .++.......       ......+++.|+| |.   ...++.++||||+||+++||++|+.||..
T Consensus       147 ~a~~~~~~~~-------~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~  204 (292)
T d1unla_         147 LARAFGIPVR-------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  204 (292)
T ss_dssp             TCEECCSCCS-------CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred             hhhcccCCCc-------cceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCC
Confidence            9998765432       2333456777877 65   33468999999999999999999999754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2e-18  Score=160.81  Aligned_cols=184  Identities=20%  Similarity=0.277  Sum_probs=134.3

Q ss_pred             CCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEE
Q 046036           13 LQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQL   92 (614)
Q Consensus        13 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L   92 (614)
                      +...++..+.+++.++.  ..+.+|++|++++|.++.. + .   +..++ +|++|+|++|++++ ++ .++.+++|++|
T Consensus        26 ~i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~---l~~l~-~L~~L~L~~n~i~~-l~-~~~~l~~L~~L   95 (210)
T d1h6ta2          26 TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-G---IQYLP-NVTKLFLNGNKLTD-IK-PLANLKNLGWL   95 (210)
T ss_dssp             HHHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-T---GGGCT-TCCEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             HHHHHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-h---HhhCC-CCCEEeCCCccccC-cc-ccccCcccccc
Confidence            33445666777655543  3466788888888888743 2 2   56676 88888888888874 33 36778888888


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFST  172 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  172 (614)
                      ++++|++++ +| .+..+++|+.|+            +++|.+..  ...+..+++|+.+++++|.+++  +..+..+++
T Consensus        96 ~l~~n~i~~-l~-~l~~l~~L~~L~------------l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~  157 (210)
T d1h6ta2          96 FLDENKVKD-LS-SLKDLKKLKSLS------------LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTK  157 (210)
T ss_dssp             ECCSSCCCC-GG-GGTTCTTCCEEE------------CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTT
T ss_pred             ccccccccc-cc-cccccccccccc------------cccccccc--cccccccccccccccccccccc--ccccccccc
Confidence            888888874 44 477777777776            88888763  2357888888888888888873  334667888


Q ss_pred             CCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccCcccchHHhccC
Q 046036          173 LSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGNRSKFEHLLLGG  228 (614)
Q Consensus       173 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~  228 (614)
                      |+.+++++|++++ ++ .+.++++|++|+|++|+++.. + .+..+++|++|+|++
T Consensus       158 L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         158 LDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccc-cc-cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            8888888888875 33 378888888888888888753 3 578888888888764

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.75  E-value=4e-19  Score=177.97  Aligned_cols=108  Identities=22%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCC-Ceeeccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDM-TAYVGDFGL  452 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~-~~kl~DfGl  452 (614)
                      .....++|||||++|+|.++.+      .++......++.++                  |+|||++.++ .+|++|||+
T Consensus       103 ~~~~~~~v~e~~~~~~L~~~~~------~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~  176 (328)
T d3bqca1         103 VSRTPALVFEHVNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGL  176 (328)
T ss_dssp             TTCSEEEEEECCCSCBGGGTTT------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGG
T ss_pred             CCCceeEEEeecCCCcHHHHhc------CCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeeccccc
Confidence            3456899999999999988753      37888888888877                  9999998655 589999999


Q ss_pred             ccccCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          453 ARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       453 a~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |+.......        ....+||+.|+| |.   ...++.++||||+||+++|+++|+.||...
T Consensus       177 a~~~~~~~~--------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~  233 (328)
T d3bqca1         177 AEFYHPGQE--------YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  233 (328)
T ss_dssp             CEECCTTCC--------CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ceeccCCCc--------ccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCC
Confidence            987765422        344678999966 76   345789999999999999999999998753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.3e-18  Score=160.45  Aligned_cols=135  Identities=25%  Similarity=0.301  Sum_probs=72.3

Q ss_pred             cCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCC
Q 046036          130 LAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD  209 (614)
Q Consensus       130 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  209 (614)
                      |++|+|++..  .++.+++|++|++++|++++ +| .+..+++|+.|++++|.+.. + ..+..+++++.+++++|.+++
T Consensus        75 L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~  148 (210)
T d1h6ta2          75 LNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD  148 (210)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc
Confidence            4444444322  23445555555555555542 22 24445555555555555442 2 234555555555555555543


Q ss_pred             CccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEEECcC
Q 046036          210 EIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENLNLSF  276 (614)
Q Consensus       210 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~  276 (614)
                      .  ..+..+++|+.+++++|++++ ++ .+.++++|+.|+|++|+++. +| .+..+++|+.|+|++
T Consensus       149 ~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 I--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             c--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            2  234455566666666666653 22 25666777777777777763 33 466777777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.6e-18  Score=160.18  Aligned_cols=164  Identities=24%  Similarity=0.379  Sum_probs=78.6

Q ss_pred             eeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEec
Q 046036           15 NLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLGL   94 (614)
Q Consensus        15 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L   94 (614)
                      .+.++.+.+++.++  ...+.+|++|++++|.++. ++    ++..++ +|++|+|++|++++..|  +.++++|++|++
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~----~l~~l~-nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l   91 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID----GVEYLN-NLTQINFSNNQLTDITP--LKNLTKLVDILM   91 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-CT----TGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-cc----ccccCC-CcCcCccccccccCccc--ccCCcccccccc
Confidence            34445555554332  2344555566666665552 11    144444 55556666665553222  555555666666


Q ss_pred             cCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCC
Q 046036           95 DRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLS  174 (614)
Q Consensus        95 ~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  174 (614)
                      ++|.+.. ++ .+.++++|+.|+            +++|.+...  ..+..+++|+.|++++|++. .++ .+..+++|+
T Consensus        92 ~~n~~~~-~~-~l~~l~~L~~L~------------l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~  153 (199)
T d2omxa2          92 NNNQIAD-IT-PLANLTNLTGLT------------LFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQ  153 (199)
T ss_dssp             CSSCCCC-CG-GGTTCTTCSEEE------------CCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCS
T ss_pred             ccccccc-cc-cccccccccccc------------ccccccccc--cccchhhhhHHhhhhhhhhc-ccc-ccccccccc
Confidence            5555542 22 244444444444            555554422  23445555555555555554 222 244455555


Q ss_pred             EEEcCCCCCccCCcccccCCCCCceeccCCccCC
Q 046036          175 SIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLS  208 (614)
Q Consensus       175 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  208 (614)
                      .|++++|++++. + .++++++|++|++++|+++
T Consensus       154 ~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         154 QLNFSSNQVTDL-K-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccCC-c-cccCCCCCCEEECCCCCCC
Confidence            555555555432 1 2444555555555555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=5.5e-18  Score=156.45  Aligned_cols=131  Identities=25%  Similarity=0.363  Sum_probs=67.7

Q ss_pred             cCCCccccccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCC
Q 046036          130 LAENNLTGNIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSD  209 (614)
Q Consensus       130 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  209 (614)
                      +++|++++..+  +.++++|++|++++|.+. .++ .+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+..
T Consensus        69 Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~  142 (199)
T d2omxa2          69 FSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD  142 (199)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC
T ss_pred             cccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc
Confidence            44444443221  445555555555555544 222 244455555555555554422  224455555555555555543


Q ss_pred             CccccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCcccCCCCCCCEE
Q 046036          210 EIPITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPKELETLPFLENL  272 (614)
Q Consensus       210 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  272 (614)
                      .  ..+..+++|+.|++++|++++. + .++++++|+.|++++|+++. ++ .+..+++|+.|
T Consensus       143 ~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         143 I--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             c--ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            2  2355555556666666665532 2 25666777777777777664 22 35666666654

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.3e-19  Score=178.65  Aligned_cols=177  Identities=15%  Similarity=0.108  Sum_probs=111.5

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccccc
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLARF  455 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla~~  455 (614)
                      ...++||||+.+|+|.++++.+    .+++.....++.++                  |+|||++.++.+|++|||++..
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~~----~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~  170 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH  170 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----C
T ss_pred             CceEEEEEeecCCchhhhcccc----cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcc
Confidence            3456778888999999999643    48888888888888                  9999999999999999999976


Q ss_pred             cCCCCCCCCCCCcCcccccccccccc-cc---cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCCC
Q 046036          456 LPTNVTNPMKGQSNSAAVWGSIGYNM-EW---VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPES  531 (614)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~gt~~y~a-E~---~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~~  531 (614)
                      ....          .....||+.|+| |.   ...++.++||||+||+++||++|+.||....... ......+......
T Consensus       171 ~~~~----------~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~-~~~~i~~~~~~~~  239 (348)
T d2gfsa1         171 TDDE----------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID-QLKLILRLVGTPG  239 (348)
T ss_dssp             CTGG----------GSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCC
T ss_pred             cCcc----------cccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCC
Confidence            5432          334679999977 75   3457899999999999999999999997532211 1111111111100


Q ss_pred             -------hHHHHHHHHhcCcCCCCCCchhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          532 -------VMELVYSRLLQGVDKDAEDEPCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       532 -------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                             ......... ......+...  +.......-..+.++..+|++.||++|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         240 AELLKKISSESARNYI-QSLTQMPKMN--FANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             HHHHTTCCCHHHHHHH-TTSCCCCCCC--HHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hHHhhhccchhhhhhh-hhcccCCCcc--hhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence                   011111111 1111111110  11000111123446777999999999999999986

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5e-18  Score=171.56  Aligned_cols=182  Identities=17%  Similarity=0.081  Sum_probs=107.8

Q ss_pred             CCCceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC------------------CCceeeCCCCCeeecccccc
Q 046036          392 GNDFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI------------------PSNVLLDYDMTAYVGDFGLA  453 (614)
Q Consensus       392 ~~~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i------------------~~NILld~~~~~kl~DfGla  453 (614)
                      .....|+|||||.+|.+ +.++.     .+++.....++.++                  |+|||++.++..|++|||++
T Consensus        93 ~~~~~~iv~Ey~~~~l~-~~~~~-----~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~  166 (355)
T d2b1pa1          93 EFQDVYLVMELMDANLC-QVIQM-----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA  166 (355)
T ss_dssp             TCCEEEEEEECCSEEHH-HHHTS-----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-
T ss_pred             cCceeEEEEeccchHHH-Hhhhc-----CCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhh
Confidence            34678999999987555 44442     37888888888777                  99999999999999999999


Q ss_pred             cccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcccccCchHHHHHHhhCCC
Q 046036          454 RFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEMFADCLSLHNFCEMALPE  530 (614)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~~~~~~~l~~~~~~~~~~  530 (614)
                      +......        ..+..+||+.|+| |.  ...++.++||||+||+++||++|+.||...... .......+.....
T Consensus       167 ~~~~~~~--------~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~-~~~~~i~~~~~~~  237 (355)
T d2b1pa1         167 RTAGTSF--------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI-DQWNKVIEQLGTP  237 (355)
T ss_dssp             ----------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCC
T ss_pred             hcccccc--------ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHH-HHHHHHHHhccCC
Confidence            8765432        2445789999977 87  677899999999999999999999999753211 1111111111100


Q ss_pred             ------ChHHHHHHHHhcCcCCCCCCc---------hhhHHHHHHHHHHHHHHhhccCCCCccCCCCHHHHHH
Q 046036          531 ------SVMELVYSRLLQGVDKDAEDE---------PCMKAKIRECLTSLGRIGIASLTETPNERMGVREMVM  588 (614)
Q Consensus       531 ------~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~  588 (614)
                            .....................         +............+.++..+|++.||++|||++||++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~  310 (355)
T d2b1pa1         238 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  310 (355)
T ss_dssp             CHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                  011111111111110000000         0000111223334556788999999999999999985

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.8e-18  Score=178.67  Aligned_cols=297  Identities=15%  Similarity=0.073  Sum_probs=192.6

Q ss_pred             ccCCCCCCeeeecCCcccc----cCCcCCCCCCCCcEEecccccCcccCCcChh-hhccccccccEEEccCCccccc---
Q 046036            7 IGNLFRLQNLNFGNSTVQG----EIPSHLSPTSKLTYLSLFSNNLHGIIPPSLD-SFTNLSTKLRILDAGGNQFAGD---   78 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~~~l~~~L~~L~L~~N~l~~~---   78 (614)
                      +..++++++|+|++|.|+.    .++..+..+++|++|||++|.|+...-..+. .+.....+|++|+|++|+++..   
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            4457889999999999883    3355677899999999999998632111111 1222123799999999999743   


Q ss_pred             -CCCCCcCCCCCCEEeccCCcCcccCCccc---------------------------------cCCCCCCcccccc----
Q 046036           79 -IPAGIPKYFNLIQLGLDRNCLAGSIPFSI---------------------------------GKLQNLQKLNPLA----  120 (614)
Q Consensus        79 -~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---------------------------------~~l~~L~~L~l~~----  120 (614)
                       ++..+..+++|++|+|++|.++......+                                 .....++.+++..    
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~  182 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  182 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccc
Confidence             45567788999999999998753211111                                 0111222222100    


Q ss_pred             -----------------------------------------cccccceEecCCCcccc-----ccchhhhccCCCCeeec
Q 046036          121 -----------------------------------------TSLYSFQLNLAENNLTG-----NIPESLENLTSLQILNL  154 (614)
Q Consensus       121 -----------------------------------------~~~~l~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L  154 (614)
                                                               ....++.+++++|.+..     .....+.....|+.|++
T Consensus       183 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l  262 (460)
T d1z7xw1         183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  262 (460)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             cccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccc
Confidence                                                     00034456666666532     12223345678999999


Q ss_pred             ccccCCCCC----CCCCCCCCCCCEEEcCCCCCccCCcccc-----cCCCCCceeccCCccCCCCccccc----cCcccc
Q 046036          155 SCNHLGGSI----PKPSGLFSTLSSIDFAHNNFNGSLPLEV-----GSLSNTQELDFSEHMLSDEIPITL----GNRSKF  221 (614)
Q Consensus       155 ~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~ls~N~l~~~~~~~~----~~l~~L  221 (614)
                      ++|.+....    ...+...+.++.+++++|.++......+     .....|+.+++++|.++......+    ...++|
T Consensus       263 ~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L  342 (460)
T d1z7xw1         263 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  342 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccch
Confidence            999886321    1223457889999999999874333222     234689999999999876543333    445689


Q ss_pred             hHHhccCcccccc----CCcccc-CCCccceEEccCCcCccc----CCcccCCCCCCCEEECcCCcCcccCC-----Ccc
Q 046036          222 EHLLLGGNMFQGR----IPPFFG-SFKGTIDLNLSHNNLSGT----IPKELETLPFLENLNLSFNNFEGQLP-----SMS  287 (614)
Q Consensus       222 ~~L~L~~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p-----~~~  287 (614)
                      ++|+|++|.++..    ++..+. ..+.|+.|+|++|+|+..    ++..+..+++|++|++++|+++..-.     .+.
T Consensus       343 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  422 (460)
T d1z7xw1         343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR  422 (460)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred             hhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHH
Confidence            9999999998642    233333 457799999999999853    34556678999999999999974211     011


Q ss_pred             -ccCCCceEEEecCCCc
Q 046036          288 -VFTNTSVISIVGNGKL  303 (614)
Q Consensus       288 -~~~~l~~~~~~~N~~~  303 (614)
                       ....++.+.+.+|.+.
T Consensus       423 ~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         423 QPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             STTCCCCEEECTTCCCC
T ss_pred             hCCCccCEEECCCCCCC
Confidence             2236788888887653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.1e-16  Score=136.91  Aligned_cols=87  Identities=17%  Similarity=0.168  Sum_probs=43.7

Q ss_pred             ccCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCC
Q 046036            7 IGNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY   86 (614)
Q Consensus         7 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l   86 (614)
                      |.+..+|++|+|++|+|+. ++..+..+++|++|+|++|+|+.. + .   |..++ +|++|++++|+++...+..+..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~---~~~l~-~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-G---FPLLR-RLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-C---CCCCS-SCCEEECCSSCCCEECSCHHHHC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc-C-C---cccCc-chhhhhcccccccCCCccccccc
Confidence            4445555555555555552 344444555555555555555522 1 1   44444 55555555555553333333445


Q ss_pred             CCCCEEeccCCcCc
Q 046036           87 FNLIQLGLDRNCLA  100 (614)
Q Consensus        87 ~~L~~L~L~~N~l~  100 (614)
                      ++|++|++++|+++
T Consensus        87 ~~L~~L~L~~N~i~  100 (162)
T d1a9na_          87 PDLTELILTNNSLV  100 (162)
T ss_dssp             TTCCEEECCSCCCC
T ss_pred             cccccceecccccc
Confidence            55555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.57  E-value=7.6e-17  Score=162.37  Aligned_cols=255  Identities=18%  Similarity=0.201  Sum_probs=131.6

Q ss_pred             CccccCCCCCCeeeecCCccccc----CCcCCCCCCCCcEEecccccCccc---CCcChh----hhccccccccEEEccC
Q 046036            4 PQEIGNLFRLQNLNFGNSTVQGE----IPSHLSPTSKLTYLSLFSNNLHGI---IPPSLD----SFTNLSTKLRILDAGG   72 (614)
Q Consensus         4 p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---~p~~~~----~~~~l~~~L~~L~L~~   72 (614)
                      ...+.+...|+.|+|++|.|...    +.+.+...++|+.|+++++.....   .|..+.    .+...+ +|+.|+|++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCS
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCC-Ccccccccc
Confidence            34555667777888887777532    334556677777888777654321   121111    133344 677777777


Q ss_pred             Cccccc----CCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccc---cccccccceEecCCCccccc----cch
Q 046036           73 NQFAGD----IPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNP---LATSLYSFQLNLAENNLTGN----IPE  141 (614)
Q Consensus        73 N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l---~~~~~~l~~L~L~~N~l~~~----~~~  141 (614)
                      |.++..    +...+...++|++|++++|.++......+..  .|..+..   ......++.+++++|.++..    +..
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccc--cccccccccccccCcccceeecccccccccccccccc
Confidence            776532    2223345667777777777764221111110  0000000   00001223344666666522    223


Q ss_pred             hhhccCCCCeeecccccCCCC-----CCCCCCCCCCCCEEEcCCCCCccC----CcccccCCCCCceeccCCccCCCCcc
Q 046036          142 SLENLTSLQILNLSCNHLGGS-----IPKPSGLFSTLSSIDFAHNNFNGS----LPLEVGSLSNTQELDFSEHMLSDEIP  212 (614)
Q Consensus       142 ~~~~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~~  212 (614)
                      .+...+.|+.|+|++|++...     +...+...++|+.|+|++|.|+..    +...+..+++|++|+|++|.|++...
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence            345566666677666666521     223344556666666666665422    22334455666666666665543211


Q ss_pred             ccccCcccchHHhccCccccccCCcccc--CCCccceEEccCCcCcccC----CcccC-CCCCCCEEECcCCcCcc
Q 046036          213 ITLGNRSKFEHLLLGGNMFQGRIPPFFG--SFKGTIDLNLSHNNLSGTI----PKELE-TLPFLENLNLSFNNFEG  281 (614)
Q Consensus       213 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~----p~~~~-~l~~L~~L~ls~N~l~~  281 (614)
                      ..+                    -..+.  ..+.|+.|++++|+++...    ...+. +.++|+.|++++|++..
T Consensus       261 ~~l--------------------~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         261 AAV--------------------VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHH--------------------HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHH--------------------HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            111                    11111  1356778888888776422    22222 46778888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.2e-15  Score=133.30  Aligned_cols=123  Identities=17%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccchhh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPESL  143 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~~  143 (614)
                      +|++|+|++|+|+ .++..+..+++|+.|+|++|+|+. ++ .|..+++|++|+            +++|+++...+..+
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~------------ls~N~i~~l~~~~~   83 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLL------------VNNNRICRIGEGLD   83 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEE------------CCSSCCCEECSCHH
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhh------------cccccccCCCcccc
Confidence            4455555555554 334333444555555555555542 21 244444444444            55555554434444


Q ss_pred             hccCCCCeeecccccCCCCCC-CCCCCCCCCCEEEcCCCCCccCC---cccccCCCCCceec
Q 046036          144 ENLTSLQILNLSCNHLGGSIP-KPSGLFSTLSSIDFAHNNFNGSL---PLEVGSLSNTQELD  201 (614)
Q Consensus       144 ~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~  201 (614)
                      ..+++|++|+|++|+|+.... ..+..+++|++|++++|.++...   +..+..+++|+.||
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            555555555555555552211 23445556666666666554221   12355566666665

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=7.8e-16  Score=155.96  Aligned_cols=110  Identities=19%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             CceeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC-------------------CCceeeCCCCC------eeec
Q 046036          394 DFKALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI-------------------PSNVLLDYDMT------AYVG  448 (614)
Q Consensus       394 ~~~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i-------------------~~NILld~~~~------~kl~  448 (614)
                      ...++||+++..+..............+++.....++.++                   |+|||++.++.      +|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~  174 (362)
T d1q8ya_          95 NGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIA  174 (362)
T ss_dssp             TEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEEC
T ss_pred             cceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEe
Confidence            4456777777665543333222234456776666666655                   99999986653      8999


Q ss_pred             ccccccccCCCCCCCCCCCcCcccccccccccc-cc--cCCCCccCceeehhHHHHHHHhCCCCCCcc
Q 046036          449 DFGLARFLPTNVTNPMKGQSNSAAVWGSIGYNM-EW--VARYQHKGKGYSCGILLLEIMTGKRPTDEM  513 (614)
Q Consensus       449 DfGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a-E~--~~~~~~k~DVySfGvvllElltG~~p~~~~  513 (614)
                      |||.++.....          ....+||+.|+| |.  ...++.++||||+||+++||++|+.||...
T Consensus       175 dfg~s~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~  232 (362)
T d1q8ya_         175 DLGNACWYDEH----------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD  232 (362)
T ss_dssp             CCTTCEETTBC----------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             ecccccccccc----------cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCC
Confidence            99999865433          234679999977 87  677899999999999999999999999753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.1e-14  Score=122.42  Aligned_cols=95  Identities=26%  Similarity=0.345  Sum_probs=51.3

Q ss_pred             CeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCCCCEEe
Q 046036           14 QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFNLIQLG   93 (614)
Q Consensus        14 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~   93 (614)
                      |.|+|++|+|+ .++ .+..+++|++|++++|+|+ .+|+.   +..++ +|++|++++|.|+ .+| .+..+++|++|+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~---~~~l~-~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPA---LAALR-CLEVLQASDNALE-NVD-GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGG---GGGCT-TCCEEECCSSCCC-CCG-GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhh---hhhhh-ccccccccccccc-ccC-ccccccccCeEE
Confidence            45666666666 333 3566666666666666665 34544   44454 5666666666665 233 355666666666


Q ss_pred             ccCCcCcccCC-ccccCCCCCCccc
Q 046036           94 LDRNCLAGSIP-FSIGKLQNLQKLN  117 (614)
Q Consensus        94 L~~N~l~~~~p-~~~~~l~~L~~L~  117 (614)
                      +++|+++.... ..+..+++|+.|+
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEE
Confidence            66666653221 2344444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=8.1e-15  Score=123.19  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=15.5

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCCcCc
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRNCLA  100 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  100 (614)
                      +|++|++++|+|+ .+|..+..+++|+.|++++|.|+
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCccC-cchhhhhhhhccccccccccccc
Confidence            4444444444443 23333444444444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.3e-16  Score=152.84  Aligned_cols=60  Identities=22%  Similarity=0.169  Sum_probs=28.9

Q ss_pred             cccchHHhccCc-cccccCCccccCCCccceEEccCC-cCcccCCcccCCCCCCCEEECcCC
Q 046036          218 RSKFEHLLLGGN-MFQGRIPPFFGSFKGTIDLNLSHN-NLSGTIPKELETLPFLENLNLSFN  277 (614)
Q Consensus       218 l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ls~N  277 (614)
                      +++|++|++++| .+++.....+..+++|++|+|++| .++......+..+++|+.|+++++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            444444444443 233333344445555555555552 344444444555555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.1e-16  Score=150.00  Aligned_cols=249  Identities=18%  Similarity=0.197  Sum_probs=161.6

Q ss_pred             CeeeecCCcccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCccccc-CCCCCcCCCCCCEE
Q 046036           14 QNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGD-IPAGIPKYFNLIQL   92 (614)
Q Consensus        14 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L   92 (614)
                      +.|||+++.+.......+.. ..+..+.++...+.......    .... +|++|||+++.++.. ++..+..+++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~----~~~~-~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEH----FSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSC----CCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhh----ccCC-CCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            47888888775332222211 13456666666655333322    2233 788899998887643 34456778899999


Q ss_pred             eccCCcCcccCCccccCCCCCCcccccccccccceEecCCC-ccccc-cchhhhccCCCCeeecccc-cCCCC-CCCCCC
Q 046036           93 GLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAEN-NLTGN-IPESLENLTSLQILNLSCN-HLGGS-IPKPSG  168 (614)
Q Consensus        93 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~  168 (614)
                      +|++|.++...+..++.+++|++|+            |++| .++.. +...+..+++|++|+++++ .++.. +...+.
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~------------Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~  144 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLN------------LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  144 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEE------------CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             cccccCCCcHHHHHHhcCCCCcCcc------------ccccccccccccchhhHHHHhccccccccccccccccchhhhc
Confidence            9999888877777888888888777            8885 45532 2223457889999999885 34311 111122


Q ss_pred             -CCCCCCEEEcCCC--CCccC-CcccccCCCCCceeccCCc-cCCCCccccccCcccchHHhccCc-cccccCCccccCC
Q 046036          169 -LFSTLSSIDFAHN--NFNGS-LPLEVGSLSNTQELDFSEH-MLSDEIPITLGNRSKFEHLLLGGN-MFQGRIPPFFGSF  242 (614)
Q Consensus       169 -~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l  242 (614)
                       ..++|+.|+++++  .++.. +...+.++++|++|++++| .+++.....+..+++|++|+|+++ .++......++.+
T Consensus       145 ~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence             2467899999875  34322 2223456789999999886 477777778888899999999984 5766556677888


Q ss_pred             CccceEEccCCcCcccCCcccCCCCCCCEEECcCCcCcccC
Q 046036          243 KGTIDLNLSHNNLSGTIPKELETLPFLENLNLSFNNFEGQL  283 (614)
Q Consensus       243 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  283 (614)
                      ++|+.|+++++--.+.++.....+|+|+   +..++++...
T Consensus       225 ~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~  262 (284)
T d2astb2         225 PTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIA  262 (284)
T ss_dssp             TTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTT
T ss_pred             CCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCC
Confidence            9999999988722222222233456554   5677777553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.3e-16  Score=160.69  Aligned_cols=133  Identities=18%  Similarity=0.161  Sum_probs=88.6

Q ss_pred             CCCCCEEEcCCCCCccCC----cccccCCCCCceeccCCccCCCC-----ccccccCcccchHHhccCcccccc----CC
Q 046036          170 FSTLSSIDFAHNNFNGSL----PLEVGSLSNTQELDFSEHMLSDE-----IPITLGNRSKFEHLLLGGNMFQGR----IP  236 (614)
Q Consensus       170 l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~----~p  236 (614)
                      .+.|+.|++++|.++...    ...+...+.|+.|+|++|.++..     +...+..+++|+.|+|++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            456777777777665322    22344567777777777777532     233456677788888888877532    33


Q ss_pred             ccccCCCccceEEccCCcCcccCCcc----cC--CCCCCCEEECcCCcCccc----CC-Cc-cccCCCceEEEecCCC
Q 046036          237 PFFGSFKGTIDLNLSHNNLSGTIPKE----LE--TLPFLENLNLSFNNFEGQ----LP-SM-SVFTNTSVISIVGNGK  302 (614)
Q Consensus       237 ~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~--~l~~L~~L~ls~N~l~~~----~p-~~-~~~~~l~~~~~~~N~~  302 (614)
                      ..+...++|+.|+|++|.|++.....    +.  ..+.|+.|++++|+++..    +. .. ...++++.++++||..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            45677899999999999998543222    22  346799999999998742    11 11 1356789999999975

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=1.9e-15  Score=138.48  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=70.6

Q ss_pred             ccchhhhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCccCCcccccCCCCCceeccCCccCCCCccccccC
Q 046036          138 NIPESLENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFNGSLPLEVGSLSNTQELDFSEHMLSDEIPITLGN  217 (614)
Q Consensus       138 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~  217 (614)
                      .++.++..+++|++|+|++|+|+ .++ .+..+++|+.|+|++|.|+ .+|..+..+++|+.|++++|.++..  ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccc
Confidence            34456777777777777777776 343 3666677777777777766 4444444455677777777766642  23555


Q ss_pred             cccchHHhccCccccccCC-ccccCCCccceEEccCCcCccc
Q 046036          218 RSKFEHLLLGGNMFQGRIP-PFFGSFKGTIDLNLSHNNLSGT  258 (614)
Q Consensus       218 l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~  258 (614)
                      +++|+.|++++|+++.... ..+..+++|+.|+|++|++...
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            6666666666666653211 3456666666666666666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.39  E-value=1.9e-15  Score=138.48  Aligned_cols=145  Identities=25%  Similarity=0.272  Sum_probs=106.9

Q ss_pred             CCCCeeeecCC--cccccCCcCCCCCCCCcEEecccccCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCCCC
Q 046036           11 FRLQNLNFGNS--TVQGEIPSHLSPTSKLTYLSLFSNNLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKYFN   88 (614)
Q Consensus        11 ~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~   88 (614)
                      ..++.+++.++  .+. .++..|+.+++|++|+|++|+|+. ++ .   +.+++ +|++|+|++|.|+ .+|..+..+++
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~---l~~l~-~L~~L~Ls~N~i~-~i~~~~~~~~~   94 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-S---LSGME-NLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-C---HHHHT-TCCEEECCEEEEC-SCSSHHHHHHH
T ss_pred             cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-c---ccCCc-cccChhhcccccc-ccccccccccc
Confidence            34556666554  233 455678889999999999999984 44 3   66776 8999999999987 56655555678


Q ss_pred             CCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccccccc-hhhhccCCCCeeecccccCCCCCCCC-
Q 046036           89 LIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIP-ESLENLTSLQILNLSCNHLGGSIPKP-  166 (614)
Q Consensus        89 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~-  166 (614)
                      |++|++++|+++..  ..+..+++|+.|+            |++|+|+.... ..|..+++|++|+|++|.+....+.. 
T Consensus        95 L~~L~l~~N~i~~l--~~~~~l~~L~~L~------------L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  160 (198)
T d1m9la_          95 LEELWISYNQIASL--SGIEKLVNLRVLY------------MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN  160 (198)
T ss_dssp             CCEEECSEEECCCH--HHHHHHHHSSEEE------------ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTT
T ss_pred             cccccccccccccc--ccccccccccccc------------cccchhccccccccccCCCccceeecCCCccccCccccc
Confidence            99999999998843  3467777777776            99999885432 46888999999999999887544432 


Q ss_pred             ---------CCCCCCCCEEE
Q 046036          167 ---------SGLFSTLSSID  177 (614)
Q Consensus       167 ---------~~~l~~L~~L~  177 (614)
                               +..+++|+.||
T Consensus       161 ~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         161 ATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             THHHHHHHHHHHCSSCCEES
T ss_pred             chhhHHHHHHHHCCCcCEeC
Confidence                     34578899886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.9e-16  Score=159.92  Aligned_cols=113  Identities=19%  Similarity=0.275  Sum_probs=82.6

Q ss_pred             CCCCeeeecCCcccccC-CcCCCCCCCCcEEecccccCcccCCcChh-hhccccccccEEEccCCccccc----CCCCCc
Q 046036           11 FRLQNLNFGNSTVQGEI-PSHLSPTSKLTYLSLFSNNLHGIIPPSLD-SFTNLSTKLRILDAGGNQFAGD----IPAGIP   84 (614)
Q Consensus        11 ~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~~~l~~~L~~L~L~~N~l~~~----~p~~~~   84 (614)
                      .+|+.||+++|++++.. .+.+..+++|++|+|++|+++...-..+. .+...+ +|++|||++|.|+..    +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHHHh
Confidence            36899999999998532 34456789999999999998732211211 156676 899999999998632    223333


Q ss_pred             -CCCCCCEEeccCCcCccc----CCccccCCCCCCcccccccccccceEecCCCccc
Q 046036           85 -KYFNLIQLGLDRNCLAGS----IPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLT  136 (614)
Q Consensus        85 -~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~  136 (614)
                       ...+|++|+|++|.++..    ++..+..+++|++|+            |++|.++
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~------------L~~N~i~  125 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH------------LSDNLLG  125 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEE------------CCSSBCH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccc------------cccccch
Confidence             335899999999999754    455677788888777            9998875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-12  Score=113.82  Aligned_cols=107  Identities=21%  Similarity=0.162  Sum_probs=81.6

Q ss_pred             cccEEEccCCcccccCCCCCcCCCCCCEEeccCC-cCcccCCccccCCCCCCcccccccccccceEecCCCccccccchh
Q 046036           64 KLRILDAGGNQFAGDIPAGIPKYFNLIQLGLDRN-CLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLTGNIPES  142 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~~~~~~~  142 (614)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|+            |++|+|+.+.+..
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~------------Ls~N~l~~i~~~~   75 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT------------IVKSGLRFVAPDA   75 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEE------------CCSSCCCEECTTG
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcce------------eeccccCCccccc
Confidence            3456788888876 56777888888888888765 47766667788888888777            8888888777888


Q ss_pred             hhccCCCCeeecccccCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 046036          143 LENLTSLQILNLSCNHLGGSIPKPSGLFSTLSSIDFAHNNFN  184 (614)
Q Consensus       143 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  184 (614)
                      |..+++|++|+|++|+|+ .+|.......+|+.|+|++|.+.
T Consensus        76 f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            888888888888888888 44444444446888888888775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.7e-12  Score=112.18  Aligned_cols=111  Identities=22%  Similarity=0.144  Sum_probs=81.7

Q ss_pred             cCCCCCCeeeecCCcccccCCcCCCCCCCCcEEecccc-cCcccCCcChhhhccccccccEEEccCCcccccCCCCCcCC
Q 046036            8 GNLFRLQNLNFGNSTVQGEIPSHLSPTSKLTYLSLFSN-NLHGIIPPSLDSFTNLSTKLRILDAGGNQFAGDIPAGIPKY   86 (614)
Q Consensus         8 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l   86 (614)
                      ......+.++.+++.+. ..|..+..+++|++|++++| .|+.+.+..   |.+++ +|+.|+|++|+|+...|.+|..+
T Consensus         5 C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~---f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l   79 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRD---LRGLG-ELRNLTIVKSGLRFVAPDAFHFT   79 (156)
T ss_dssp             SCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGG---SCSCC-CCSEEECCSSCCCEECTTGGGSC
T ss_pred             CCcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchh---hcccc-ccCcceeeccccCCccccccccc
Confidence            34455677888888887 56777888888888888765 477555555   67777 88888888888887777778888


Q ss_pred             CCCCEEeccCCcCcccCCccccCCCCCCcccccccccccceEecCCCccc
Q 046036           87 FNLIQLGLDRNCLAGSIPFSIGKLQNLQKLNPLATSLYSFQLNLAENNLT  136 (614)
Q Consensus        87 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~~~~~l~~L~L~~N~l~  136 (614)
                      ++|++|+|++|+|+...+..|..+ +|+.|+            |++|.+.
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~------------L~~Np~~  116 (156)
T d2ifga3          80 PRLSRLNLSFNALESLSWKTVQGL-SLQELV------------LSGNPLH  116 (156)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSC-CCCEEE------------CCSSCCC
T ss_pred             ccccceeccCCCCcccChhhhccc-cccccc------------cCCCccc
Confidence            888888888888884444444433 566555            8888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.9e-09  Score=94.43  Aligned_cols=85  Identities=20%  Similarity=0.112  Sum_probs=49.5

Q ss_pred             ccccCCCCCceeccCCccCCCCc--cccccCcccchHHhccCccccccCCccccCCCccceEEccCCcCcccCCc-----
Q 046036          189 LEVGSLSNTQELDFSEHMLSDEI--PITLGNRSKFEHLLLGGNMFQGRIPPFFGSFKGTIDLNLSHNNLSGTIPK-----  261 (614)
Q Consensus       189 ~~~~~l~~L~~L~ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-----  261 (614)
                      ..+..+++|++|+|++|+|+...  +..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|+++.....     
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            33445666777777777666532  23445566667777777766643332333445567777777777654332     


Q ss_pred             --ccCCCCCCCEEE
Q 046036          262 --ELETLPFLENLN  273 (614)
Q Consensus       262 --~~~~l~~L~~L~  273 (614)
                        .+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              245667777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.6e-09  Score=92.57  Aligned_cols=18  Identities=44%  Similarity=0.606  Sum_probs=7.8

Q ss_pred             hhccCCCCeeecccccCC
Q 046036          143 LENLTSLQILNLSCNHLG  160 (614)
Q Consensus       143 ~~~l~~L~~L~L~~N~l~  160 (614)
                      +..+++|+.|+|++|.|+
T Consensus        87 ~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          87 VQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCC
T ss_pred             HhhCCcccccccccCccc
Confidence            334444444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=3.3e-06  Score=73.52  Aligned_cols=90  Identities=14%  Similarity=0.163  Sum_probs=48.0

Q ss_pred             CCCCCeeeecCC-ccccc----CCcCCCCCCCCcEEecccccCcccCCcChh-hhccccccccEEEccCCccccc----C
Q 046036           10 LFRLQNLNFGNS-TVQGE----IPSHLSPTSKLTYLSLFSNNLHGIIPPSLD-SFTNLSTKLRILDAGGNQFAGD----I   79 (614)
Q Consensus        10 l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~~~~l~~~L~~L~L~~N~l~~~----~   79 (614)
                      .++|++|+|+++ .++..    +-..+...++|++|+|++|.+.......+. .+...+ .|++|+|++|.++..    +
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~-~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcc-cccceeeehhhcchHHHHHH
Confidence            466777777653 35422    223455566677777777766533222222 133333 666777777766532    1


Q ss_pred             CCCCcCCCCCCEEeccCCcCc
Q 046036           80 PAGIPKYFNLIQLGLDRNCLA  100 (614)
Q Consensus        80 p~~~~~l~~L~~L~L~~N~l~  100 (614)
                      -..+...+.|++|+|++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            223445556666666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=1.1e-05  Score=69.99  Aligned_cols=64  Identities=13%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             hhccCCCCeeecccccCCCC----CCCCCCCCCCCCEEEcCCCCCccC-------CcccccCCCCCceeccCCcc
Q 046036          143 LENLTSLQILNLSCNHLGGS----IPKPSGLFSTLSSIDFAHNNFNGS-------LPLEVGSLSNTQELDFSEHM  206 (614)
Q Consensus       143 ~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~ls~N~  206 (614)
                      +...+.|++|+|++|.++..    +-..+...++|++|++++|.+...       +...+...+.|+.|+++.+.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            33445555555555555421    112234445666666666654421       22334445667777766553

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.39  E-value=6.9e-06  Score=73.19  Aligned_cols=91  Identities=14%  Similarity=0.042  Sum_probs=51.0

Q ss_pred             eeEEecccCCCchhhhccCCCCCcccCHHHHHHHHhhC--------------CCceeeCCCCCeeecccccccccCCCCC
Q 046036          396 KALAFEFMPNGSLESWLHPNEATRRLDLAEGLKIAVDI--------------PSNVLLDYDMTAYVGDFGLARFLPTNVT  461 (614)
Q Consensus       396 ~~LV~Ey~~~GsL~~~L~~~~~~~~l~~~~~~~ia~~i--------------~~NILld~~~~~kl~DfGla~~~~~~~~  461 (614)
                      .++||||++++.+.+.-...      ......+++.++              |+|||++++ .+++.|||.|+.......
T Consensus        85 ~~lvme~~~~~~~~~l~~~~------~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~~~~~  157 (191)
T d1zara2          85 NAVLMELIDAKELYRVRVEN------PDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVGEEGW  157 (191)
T ss_dssp             TEEEEECCCCEEGGGCCCSC------HHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEETTSTTH
T ss_pred             CEEEEEeeccccccchhhHH------HHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccCCCCCc
Confidence            47999999997765532111      111112222222              999999965 589999999976543211


Q ss_pred             CCCCCCcCcccccccccccccc-cCCCCccCceeehhHHHH
Q 046036          462 NPMKGQSNSAAVWGSIGYNMEW-VARYQHKGKGYSCGILLL  501 (614)
Q Consensus       462 ~~~~~~~~~~~~~gt~~y~aE~-~~~~~~k~DVySfGvvll  501 (614)
                              ..-.......+.++ ..++..++||||..--++
T Consensus       158 --------~~~l~rd~~~~~~~f~r~y~~~~d~~s~~~~~~  190 (191)
T d1zara2         158 --------REILERDVRNIITYFSRTYRTEKDINSAIDRIL  190 (191)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence                    00000000111123 456788899999754433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.27  E-value=2.8e-05  Score=67.34  Aligned_cols=37  Identities=11%  Similarity=0.159  Sum_probs=17.3

Q ss_pred             cccEEEccCCccccc----CCCCCcCCCCCCEEeccCCcCc
Q 046036           64 KLRILDAGGNQFAGD----IPAGIPKYFNLIQLGLDRNCLA  100 (614)
Q Consensus        64 ~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  100 (614)
                      +|++|+|++|.++..    +...+...++++.|++++|.++
T Consensus        47 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          47 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            455555555554321    1112233445555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=3.8e-05  Score=66.44  Aligned_cols=92  Identities=16%  Similarity=0.232  Sum_probs=63.1

Q ss_pred             cCCCCCCeeeecC-Cccccc----CCcCCCCCCCCcEEecccccCcccCCcChhh-hccccccccEEEccCCccccc---
Q 046036            8 GNLFRLQNLNFGN-STVQGE----IPSHLSPTSKLTYLSLFSNNLHGIIPPSLDS-FTNLSTKLRILDAGGNQFAGD---   78 (614)
Q Consensus         8 ~~l~~L~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~l~~~L~~L~L~~N~l~~~---   78 (614)
                      .+.++|++|+|++ +.++..    +-.++...++|++|+|++|.++...-..+.. +...+ +++.|++++|.++..   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcc-cchhhhhccccccchhHH
Confidence            4578999999998 567632    3345568899999999999987543333322 44455 899999999998643   


Q ss_pred             -CCCCCcCCCCCCEEec--cCCcCc
Q 046036           79 -IPAGIPKYFNLIQLGL--DRNCLA  100 (614)
Q Consensus        79 -~p~~~~~l~~L~~L~L--~~N~l~  100 (614)
                       +...+...++|+.++|  ++|.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence             2244566677776555  455554