Citrus Sinensis ID: 046067

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
MQFSRMHKMSDGTQKFYDQPVQKLASKNWPPHQNIDHQPSSDDSNERARLSVDTFEQYCTLESSSGTGSHGAPNSPSTASFSPEKTQVSWPNQQSYSSELYQSPDRTCGSPVSGSCITQNENDLRHKLRELETVMLGPDLDTPAMYNVTSPKEDQISSESERWKCLVEIISRGDLKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKNQAIIVSSAWR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEEccEEEEEEcccEEEEEEEcc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHccccEEEcHHHccHccccHHHcccccccEEEEEHHHHHHcccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEccccEEEEcccccEEEEEEccc
mqfsrmhkmsdgtqkfydqpvqklasknwpphqnidhqpssddsnerarlSVDTFEQYctlesssgtgshgapnspstasfspektqvswpnqqsysselyqspdrtcgspvsgscitqnENDLRHKLRELEtvmlgpdldtpamynvtspkedqissESERWKCLVEIISRGDLKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALasrpggpphiritgiddstaayargggleIVGQRLSKLadlykvpfefnaaaisgsevqlenlevrpgealAVNFSMMlhhmpdesvsiQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNhygaifdsidvalprdskdriNVEQHCLAREIVNLIACEGaerverhepfgkwrsrfimagftpyplspfvNATIKTLLENyndnytleerdgalflgwkNQAIIVSSAWR
mqfsrmhkmsdgtqkfYDQPVQKLASKnwpphqnidhqpssddsnERARLSVDTFEQYCTLESssgtgshgapnSPSTASFSPEKTQVSWPNQQSYSSELYQSPDRTCGSPVSGSCITQNENDLRHKLRELETVMLGPDLDTPAMYNVTspkedqisseseRWKCLVEIISRGDLKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEErdgalflgwkNQAIIVSSAWR
MQFSRMHKMSDGTQKFYDQPVQKLASKNWPPHQNIDHQPSSDDSNERARLSVDTFEQYCTLESSSGTGSHGAPNSPSTASFSPEKTQVSWPNQQSYSSELYQSPDRTCGSPVSGSCITQNENDLRHKLRELETVMLGPDLDTPAMYNVTSPKEDQISSESERWKCLVEIISRGDLKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKNQAIIVSSAWR
*****************************************************************************************************************************************************************RWKCLVEIISRGDLKELLCACAKAIENNDMYAAESLM******VSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKNQAIIVS****
*********************************************************YCTLESSSG**************************************************************************************************************ELLCACAKAIENNDMYAAESLMAESRQMVSV*GDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKNQAIIVSSAWR
***********GTQKFYDQPVQKLASKNWPPHQ**************ARLSVDTFEQYCTL***************************************************SGSCITQNENDLRHKLRELETVMLGPDLDTPAMYNVT***********ERWKCLVEIISRGDLKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKNQAIIVSSAWR
**************KFYDQPVQKLASKNWPPHQNI*************RLSVDTFEQ*CTLE**********************************************************ENDLRHKLRELETVMLGPD***********************WKCLVEIISRGDLKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKNQAIIVSSAWR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQFSRMHKMSDGTQKFYDQPVQKLASKNWPPHQNIDHQPSSDDSNERARLSVDTFEQYCTLESSSGTGSHGAPNSPSTASFSPEKTQVSWPNQQSYSSELYQSPDRTCGSPVSGSCITQNENDLRHKLRELETVMLGPDLDTPAMYNVTSPKEDQISSESERWKCLVEIISRGDLKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKNQAIIVSSAWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query521 2.2.26 [Sep-21-2011]
Q8H125597 Scarecrow-like protein 5 yes no 0.953 0.832 0.563 1e-167
Q9LDL7490 Scarecrow-like transcript no no 0.815 0.867 0.624 1e-161
Q8GVE1544 Chitin-inducible gibberel yes no 0.861 0.825 0.587 1e-160
Q9S7H5413 Scarecrow-like protein 21 no no 0.694 0.876 0.585 1e-133
Q9M0M5529 Scarecrow-like protein 13 no no 0.959 0.945 0.461 1e-128
Q69VG1571 Chitin-inducible gibberel no no 0.765 0.698 0.489 1e-127
Q9SDQ3593 Scarecrow-like protein 1 no no 0.769 0.676 0.440 1e-104
Q9XE58769 Scarecrow-like protein 14 no no 0.667 0.452 0.352 1e-61
Q9LTI5610 Scarecrow-like protein 11 no no 0.667 0.570 0.327 8e-57
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.689 0.608 0.354 3e-55
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 310/550 (56%), Positives = 385/550 (70%), Gaps = 53/550 (9%)

Query: 1   MQFSRMHKMSDGTQKFYDQPVQKLASKNWPPHQNIDHQPSSDDSNERARLSVDTFEQYCT 60
           M+ ++ H + +G+  FY                   HQPSS    ++  LSV TF+ YCT
Sbjct: 72  MEATQKHMIQEGSSMFY-------------------HQPSSV---KQMDLSVQTFDSYCT 109

Query: 61  LESSSGTGSHGAPNSPSTASFSPEKTQVSWPNQQSYSSELY----QSPDRTCGSPVSGSC 116
           LESSSGT SH   N+ + +S +   +    P  Q+ ++ L      SP+    SP+SGS 
Sbjct: 110 LESSSGTKSHPCLNNKNNSSSTTSFSSNESPISQANNNNLSRFNNHSPEENNNSPLSGSS 169

Query: 117 ITQ-NENDLRHKLRELETVMLGPDLDTPAMYNVTSPKEDQISSESERWKCLVEIISRGDL 175
            T  NE +L   L++LET M+ PD+D    YN       Q    S      +E+ISRGDL
Sbjct: 170 ATNTNETELSLMLKDLETAMMEPDVDNS--YNNQGGFGQQHGVVSSAMYRSMEMISRGDL 227

Query: 176 KELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIY 235
           K +L  CAKA+EN D+   + L+++ +QMVSVSG+P+QRLGAYMLEGL+ARLASSGSSIY
Sbjct: 228 KGVLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIY 287

Query: 236 KALRCKE------------------------TATNGAIAEAMKDENKIHIIDFLIAQGSQ 271
           KALRCK+                         + NGAIAEA+K+E+ +HIIDF I+QG Q
Sbjct: 288 KALRCKDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQ 347

Query: 272 WIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAA 331
           W+ LI AL +RPGGPP++RITGIDD  +++AR GGLE+VGQRL KLA++  VPFEF+ AA
Sbjct: 348 WVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAA 407

Query: 332 ISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVE 391
           +  +EV++E L VR GEALAVNF ++LHHMPDESV+++NHRDRLLRLVK LSP VVTLVE
Sbjct: 408 LCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVE 467

Query: 392 QEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGA 451
           QEANTNTAPF  RF+ETMNHY A+F+SIDV L RD K+RINVEQHCLARE+VNLIACEG 
Sbjct: 468 QEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGV 527

Query: 452 ERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKN 511
           ER ERHEP GKWRSRF MAGF PYPLS +VNATIK LLE+Y++ YTLEERDGAL+LGWKN
Sbjct: 528 EREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEERDGALYLGWKN 587

Query: 512 QAIIVSSAWR 521
           Q +I S AWR
Sbjct: 588 QPLITSCAWR 597
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7H5|SCL21_ARATH Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0M5|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2 Back     alignment and function description
>sp|Q9LTI5|SCL11_ARATH Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
224061151533 GRAS family transcription factor [Populu 0.975 0.953 0.646 0.0
255576316538 Chitin-inducible gibberellin-responsive 0.980 0.949 0.642 0.0
225460767545 PREDICTED: scarecrow-like transcription 0.996 0.952 0.642 0.0
224131790547 GRAS family transcription factor [Populu 1.0 0.952 0.627 0.0
225447596545 PREDICTED: scarecrow-like transcription 0.996 0.952 0.632 0.0
297737537526 unnamed protein product [Vitis vinifera] 0.959 0.950 0.629 0.0
357495355544 Chitin-inducible gibberellin-responsive 0.992 0.950 0.620 0.0
356551832545 PREDICTED: scarecrow-like transcription 0.992 0.948 0.615 0.0
302399051551 SCL domain class transcription factor [M 0.998 0.943 0.608 0.0
383866669552 GRAS family protein, partial [Dimocarpus 1.0 0.943 0.608 0.0
>gi|224061151|ref|XP_002300358.1| GRAS family transcription factor [Populus trichocarpa] gi|222847616|gb|EEE85163.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/546 (64%), Positives = 419/546 (76%), Gaps = 38/546 (6%)

Query: 1   MQFSRMHKMSDGTQKFYDQPVQKLASKNWPPHQNIDHQPSSDDSNERARLSVDTFEQYCT 60
           MQ S+   +SDG++++ DQP+Q   S  WPP QNID        ++   LS  T +QYCT
Sbjct: 1   MQTSQKKTISDGSRRYGDQPMQYQESYCWPPIQNIDA------GSQGTHLSAMTSDQYCT 54

Query: 61  LESSSGTGSHGAPNSPSTASFSPEKTQVSWPNQQSYSSELYQSPDRTCGSPVSGSCITQN 120
           LESSS T ++   NSPSTASFSP ++ VS PN QSY S+L  S +  CGSP S S +T  
Sbjct: 55  LESSSETSAYPVHNSPSTASFSPNESVVSQPNSQSYPSDLQDSSENACGSPTSESYVT-- 112

Query: 121 ENDLRHKLRELETVMLGPDLDTPAMYNVTS-PKEDQISSESERWKCLVEIISRGDLKELL 179
                HKLRELET MLGPD D   M+++T+ P  +QI SE+E+WK LVE++SRGDLKE L
Sbjct: 113 -----HKLRELETAMLGPDSDNLDMHSMTAMPGPNQIVSEAEKWKFLVEMMSRGDLKEAL 167

Query: 180 CACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKALR 239
           C CA AI N DM+  E LM+E RQMVSV+G+PIQRLGAYMLEGL+ARLASSGSSIY ALR
Sbjct: 168 CTCALAIANGDMFTVEWLMSELRQMVSVTGEPIQRLGAYMLEGLVARLASSGSSIYNALR 227

Query: 240 CKETA------------------------TNGAIAEAMKDENKIHIIDFLIAQGSQWIIL 275
           CKE A                         NGAIA+AMKDE  +HIIDF IAQGSQW+ L
Sbjct: 228 CKEPAGADLLSYMLLLYEACPYFKFGYMSANGAIADAMKDEISVHIIDFQIAQGSQWVTL 287

Query: 276 IMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGS 335
           I ALA+RPGGPP IRITGIDDST+AYARGGGL+IVG+RL KLA+ YKVPFEF+ A +S S
Sbjct: 288 IQALAARPGGPPRIRITGIDDSTSAYARGGGLDIVGKRLLKLAESYKVPFEFHTAGVSAS 347

Query: 336 EVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEAN 395
           E+Q+ENL ++PGEA+AVNF++ LHH+PDESV  QNHRDRLLRLVK LSPKVVTLVE E+N
Sbjct: 348 EIQIENLGIQPGEAVAVNFALTLHHLPDESVGTQNHRDRLLRLVKSLSPKVVTLVEHESN 407

Query: 396 TNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVE 455
           TNT PFF RF+ET+N+Y AIF+SIDV LPR++K RI+VEQHCLARE+VN++ACEGAERVE
Sbjct: 408 TNTVPFFARFVETLNYYLAIFESIDVTLPRENKKRISVEQHCLAREVVNIVACEGAERVE 467

Query: 456 RHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDNYTLEERDGALFLGWKNQAII 515
           RHEP GKWRSRF MAGFTPYPLS FVN+TIK LLENY++ YTLEERDGALFLGW N+ ++
Sbjct: 468 RHEPLGKWRSRFEMAGFTPYPLSSFVNSTIKILLENYSEKYTLEERDGALFLGWMNRPLV 527

Query: 516 VSSAWR 521
            S AWR
Sbjct: 528 ASCAWR 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576316|ref|XP_002529051.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] gi|223531531|gb|EEF33362.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225460767|ref|XP_002274103.1| PREDICTED: scarecrow-like transcription factor PAT1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131790|ref|XP_002321179.1| GRAS family transcription factor [Populus trichocarpa] gi|222861952|gb|EEE99494.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447596|ref|XP_002272334.1| PREDICTED: scarecrow-like transcription factor PAT1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737537|emb|CBI26738.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357495355|ref|XP_003617966.1| Chitin-inducible gibberellin-responsive protein [Medicago truncatula] gi|355519301|gb|AET00925.1| Chitin-inducible gibberellin-responsive protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356551832|ref|XP_003544277.1| PREDICTED: scarecrow-like transcription factor PAT1-like [Glycine max] Back     alignment and taxonomy information
>gi|302399051|gb|ADL36820.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|383866669|gb|AFH54536.1| GRAS family protein, partial [Dimocarpus longan] gi|448278878|gb|AGE44291.1| GRAS54 protein [Dimocarpus longan] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query521
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.520 0.656 0.643 8.4e-121
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.658 0.7 0.628 1.9e-113
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.969 0.845 0.457 1.6e-109
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.533 0.468 0.516 8.9e-103
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.525 0.356 0.388 1.8e-61
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.683 0.696 0.354 2.3e-54
TAIR|locus:2148293610 AT5G59450 [Arabidopsis thalian 0.533 0.455 0.345 3.7e-54
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.531 0.506 0.402 1.6e-53
TAIR|locus:2184625640 SCL8 "AT5G52510" [Arabidopsis 0.500 0.407 0.406 2e-53
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.527 0.525 0.378 1.6e-51
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 956 (341.6 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
 Identities = 179/278 (64%), Positives = 223/278 (80%)

Query:   244 ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYAR 303
             + NGAIAEAMKDE +IHIIDF I QGSQWI LI A A+RPGG P+IRITG+ D       
Sbjct:   143 SANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGD------- 195

Query:   304 GGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPD 363
             G  L  V +RL KLA  + VPF FNA +    EV++ENL+VR GEAL VNF+ MLHH+PD
Sbjct:   196 GSVLVTVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPD 255

Query:   364 ESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVAL 423
             ESVS++NHRDRLLR+VK LSPKVVTLVEQE NTNT+PF  RFLET+++Y A+F+SIDV L
Sbjct:   256 ESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVML 315

Query:   424 PRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNA 483
             PR+ K+RIN+EQHC+AR++VN+IACEGAER+ERHE  GKW+SRF MAGF PYPLS  ++A
Sbjct:   316 PRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISA 375

Query:   484 TIKTLLENYNDNYTLEERDGALFLGWKNQAIIVSSAWR 521
             TI+ LL +Y++ Y +EERDGAL+LGW ++ ++ S AW+
Sbjct:   376 TIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK 413
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0006487 "protein N-linked glycosylation" evidence=RCA
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148293 AT5G59450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184625 SCL8 "AT5G52510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GVE1CIGR2_ORYSJNo assigned EC number0.58760.86180.8253yesno
Q8H125SCL5_ARATHNo assigned EC number0.56360.95390.8324yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027205001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (526 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-163
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  467 bits (1205), Expect = e-163
 Identities = 189/376 (50%), Positives = 238/376 (63%), Gaps = 33/376 (8%)

Query: 175 LKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSI 234
           L  LL ACA+A+ + D+  A++++A   Q+ S +GDP+QRL AY  E L ARLA SGSSI
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 235 YKALRCKET---------------------------ATNGAIAEAMKDENKIHIIDFLIA 267
           Y AL    +                             N AI EA + E ++HIIDF I 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 268 QGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEF 327
           QG QW  LI ALASRPGGPPH+RITGI      ++    LE  G RL++ AD   VPFEF
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQ--FSSAEELEETGDRLAQFADSLGVPFEF 178

Query: 328 NA-AAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKV 386
           N   A    ++ LE L+VRPGEALAVN    LH + DESVS+++     LRLVK L+PKV
Sbjct: 179 NPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPT--FLRLVKSLNPKV 236

Query: 387 VTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLI 446
           VTLVEQEAN N+APF  RF+E +++Y A+FDS++  LPRDS++R  VE+  L REIVN++
Sbjct: 237 VTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVV 296

Query: 447 ACEGAERVERHEPFGKWRSRFIMAGFTPYPLSPFVNATIKTLLENYNDN-YTLEERDGAL 505
           ACEGAERVERHE FGKWR R   AGF P PLS F     K LL  Y  + Y +EE +G+L
Sbjct: 297 ACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSL 356

Query: 506 FLGWKNQAIIVSSAWR 521
            LGWK + ++ +SAWR
Sbjct: 357 VLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 521
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.58
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.3
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.44
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.32
PLN02233261 ubiquinone biosynthesis methyltransferase 93.9
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 92.81
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 92.54
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 92.15
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 92.12
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 92.08
PLN02336475 phosphoethanolamine N-methyltransferase 91.95
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 91.41
PRK08317241 hypothetical protein; Provisional 91.41
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 90.24
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 89.52
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 89.22
PRK06202232 hypothetical protein; Provisional 88.62
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 88.21
PLN02585315 magnesium protoporphyrin IX methyltransferase 87.53
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 87.12
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 87.0
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 86.43
PRK12335287 tellurite resistance protein TehB; Provisional 85.51
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 84.3
PRK05785226 hypothetical protein; Provisional 84.1
PF13679141 Methyltransf_32: Methyltransferase domain 83.94
TIGR02081194 metW methionine biosynthesis protein MetW. This pr 83.55
PRK05134233 bifunctional 3-demethylubiquinone-9 3-methyltransf 83.2
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 82.48
PRK11207197 tellurite resistance protein TehB; Provisional 81.76
PLN02336 475 phosphoethanolamine N-methyltransferase 81.68
PLN02244340 tocopherol O-methyltransferase 81.58
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 81.41
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 81.15
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-108  Score=855.81  Aligned_cols=345  Identities=49%  Similarity=0.827  Sum_probs=329.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCChhhhHHHHHHHHHHHHHhcCCcchhhhh----------------
Q 046067          175 LKELLCACAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSIYKAL----------------  238 (521)
Q Consensus       175 L~~LLl~CA~AV~~gd~~~A~~lL~~L~~~~S~~Gdp~QRlAaYF~eAL~aRl~~sg~~~ykaL----------------  238 (521)
                      |++||++||+||+.||...|+.+|++|++++||.|||+||||+||++||.+||.++++.+|+++                
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999776665544                


Q ss_pred             ----ccCCc-------hhhHHHHhhhhccCceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchH
Q 046067          239 ----RCKET-------ATNGAIAEAMKDENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGL  307 (521)
Q Consensus       239 ----~~~~P-------tANqAIlEA~~ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L  307 (521)
                          ....|       ||||||+||++|+++||||||||++|.|||+|||+||.|++|||+||||||+.|.+.  ....+
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l  158 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL  158 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence                23334       999999999999999999999999999999999999999999999999999997765  45689


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEe-ccccccccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHHHhcCCcE
Q 046067          308 EIVGQRLSKLADLYKVPFEFNAA-AISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLVKGLSPKV  386 (521)
Q Consensus       308 ~~~G~rL~~fA~~lgvpFeF~~V-~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~vksL~Pkv  386 (521)
                      ++||+||.+||+++||||||++| ..+++++++++|++++||+|||||+|+||||+++++...+||+.||+.||+|+|||
T Consensus       159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            99999999999999999999996 55667899999999999999999999999999999888899999999999999999


Q ss_pred             EEEEecCCCCCCCchhHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccccCCChhhHHHH
Q 046067          387 VTLVEQEANTNTAPFFHRFLETMNHYGAIFDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGKWRSR  466 (521)
Q Consensus       387 vtlvEqEan~N~~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~R  466 (521)
                      ||++|+|+|||+++|++||.|||+||+|+|||||+++|+++.+|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCccccCCHHHHHHHHHHHhccC-CCcEEEEeCCEEEEEECCceeEEEeecC
Q 046067          467 FIMAGFTPYPLSPFVNATIKTLLENYN-DNYTLEERDGALFLGWKNQAIIVSSAWR  521 (521)
Q Consensus       467 m~~AGF~~~plS~~~~~qak~LL~~y~-~gy~l~e~~g~L~LgWk~rpL~s~SAWr  521 (521)
                      |.+|||+++|+|+.+..|||.||+.|. +||+|++++|||+||||++||+++||||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999999999999999999999999986 8999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>PF13679 Methyltransf_32: Methyltransferase domain Back     alignment and domain information
>TIGR02081 metW methionine biosynthesis protein MetW Back     alignment and domain information
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query521
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 90/599 (15%), Positives = 163/599 (27%), Gaps = 199/599 (33%)

Query: 8   KMSDGTQKFYDQPVQKLASKNW--PPHQNIDHQPSSDD---SNERARL--SVDTFEQY-- 58
           K  +  QKF ++ ++   +  +   P +    QPS        +R RL      F +Y  
Sbjct: 74  KQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 59  -------------CTLESSSGTGSHGAPNSPST-------ASFSPEKT---QVSWPNQQS 95
                          L  +      G   S  T        S+  +     ++ W N ++
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 96  YSSE---------LYQSPDRTCGSPVSGSC-ITQNENDLRHKLRELETVMLGPD----LD 141
            +S          L    D    S    S  I    + ++ +LR L       +    L 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 142 TPAMYNVTSPKE--------------------DQISSESERWKCLVEIISRGDLKELLCA 181
                NV + K                     D +S+ +     L          E+   
Sbjct: 252 -----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 182 CAKAIENNDMYAAESLMAESRQMVSVSGDPIQRLGAYMLEGLIARLASSGSSI---YKAL 238
             K ++       + L    R++++ +  P           +IA     G +    +K +
Sbjct: 307 LLKYLDCR----PQDL---PREVLTTN--P-------RRLSIIAESIRDGLATWDNWKHV 350

Query: 239 RCKETATNGAIAEAMK----DENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGI 294
            C +  T   I  ++      E +       +   S  I            P  +     
Sbjct: 351 NCDKLTT--IIESSLNVLEPAEYRKMFDRLSVFPPSAHI------------PTIL----- 391

Query: 295 DDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNF 354
                       L ++   +                        +  L           +
Sbjct: 392 ------------LSLIWFDVI-----KSDVMVV-----------VNKL---------HKY 414

Query: 355 SMMLHHMPDESVSIQNHRDRLLRLVKGLSPKVVTLVEQEANTNTAPFFHRFLETMNHYGA 414
           S++     + ++SI       L L K        L             HR +  ++HY  
Sbjct: 415 SLVEKQPKESTISI--P-SIYLEL-KVKLENEYAL-------------HRSI--VDHYNI 455

Query: 415 I--FDSIDVALPRDSKDRINVEQHCLAREIVNLIACEGAERVERHEPFGK------WRSR 466
              FDS D+  P   +       H +   + N       E  ER   F        +  +
Sbjct: 456 PKTFDSDDLIPPYLDQ---YFYSH-IGHHLKN------IEHPERMTLFRMVFLDFRFLEQ 505

Query: 467 FIMAGFTPYPLSPFVNATIKTLLENY------NDNYTLEERDGAL--FLGWKNQAIIVS 517
            I    T +  S  +  T++  L+ Y      ND    E    A+  FL    + +I S
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDP-KYERLVNAILDFLPKIEENLICS 562
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.19
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 96.47
1vl5_A260 Unknown conserved protein BH2331; putative methylt 96.14
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 96.06
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.0
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.94
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.83
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.75
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 95.34
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 95.13
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 95.06
2r3s_A335 Uncharacterized protein; methyltransferase domain, 95.04
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.92
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 94.87
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 94.58
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 94.51
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 94.46
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.41
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 94.16
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 94.08
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 93.9
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 93.74
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 93.48
3hnr_A220 Probable methyltransferase BT9727_4108; structural 93.47
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.43
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 93.43
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 93.27
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 93.1
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 93.02
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.6
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.57
3gu3_A284 Methyltransferase; alpha-beta protein, structural 91.84
3f4k_A257 Putative methyltransferase; structural genomics, P 91.45
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 91.25
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 90.88
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 90.87
3m70_A286 Tellurite resistance protein TEHB homolog; structu 90.73
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 90.68
3ege_A261 Putative methyltransferase from antibiotic biosyn 90.41
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 90.09
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 89.59
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 89.5
3ocj_A305 Putative exported protein; structural genomics, PS 88.55
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 88.29
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 88.09
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 88.02
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 87.98
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 87.96
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 87.66
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 87.22
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 86.99
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 86.92
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 86.89
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 86.37
2p7i_A250 Hypothetical protein; putative methyltransferase, 85.59
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 84.78
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 84.65
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 84.26
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 84.08
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 83.9
2y1w_A348 Histone-arginine methyltransferase CARM1; histone 83.8
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 83.62
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 83.59
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 83.4
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 83.22
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 83.11
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 82.99
3i9f_A170 Putative type 11 methyltransferase; structural gen 82.16
1wzn_A252 SAM-dependent methyltransferase; structural genomi 82.14
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 82.04
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 81.5
2zfu_A215 Nucleomethylin, cerebral protein 1; nucleolar prot 81.45
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 81.43
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 80.46
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.19  E-value=0.0013  Score=64.62  Aligned_cols=108  Identities=18%  Similarity=0.284  Sum_probs=63.4

Q ss_pred             CceEEEecccCCccchHHHHHHHhcCCCCCCeEEEeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEecccccc
Q 046067          257 NKIHIIDFLIAQGSQWIILIMALASRPGGPPHIRITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSE  336 (521)
Q Consensus       257 ~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~e  336 (521)
                      +.-+|+|+|.|.|.    +...|+.+- ++|..+|||||.+..      -++.+.+++.++.  ...+++|..  .+..+
T Consensus        70 ~~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~------ml~~A~~~~~~~~--~~~~v~~~~--~D~~~  134 (261)
T 4gek_A           70 PGTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPA------MIERCRRHIDAYK--APTPVDVIE--GDIRD  134 (261)
T ss_dssp             TTCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHH------HHHHHHHHHHTSC--CSSCEEEEE--SCTTT
T ss_pred             CCCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHH------HHHHHHHHHHhhc--cCceEEEee--ccccc
Confidence            34589999999985    445555553 346789999997642      3555555544322  223455543  22222


Q ss_pred             ccccccccCCCcEEEEEecCcccCCCCCcccccchHHHHHHHH-HhcCCcEE-EEEec
Q 046067          337 VQLENLEVRPGEALAVNFSMMLHHMPDESVSIQNHRDRLLRLV-KGLSPKVV-TLVEQ  392 (521)
Q Consensus       337 v~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n~rd~~L~~v-ksL~Pkvv-tlvEq  392 (521)
                           +...+-.+++.|  +.|||++++      .|..+|+.| +.|+|.-+ ++.|.
T Consensus       135 -----~~~~~~d~v~~~--~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          135 -----IAIENASMVVLN--FTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             -----CCCCSEEEEEEE--SCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----ccccccccceee--eeeeecCch------hHhHHHHHHHHHcCCCcEEEEEec
Confidence                 222233444444  588999642      356677666 67999854 55554
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query521
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.31
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.17
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 97.13
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 96.25
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 95.64
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.3
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.21
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 94.98
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 94.75
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 94.45
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 94.32
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 94.19
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 92.86
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 92.48
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 92.4
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 91.91
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 90.33
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 90.05
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 89.72
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 89.07
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 88.21
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=0.0088  Score=54.08  Aligned_cols=138  Identities=20%  Similarity=0.278  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHHHHHHhcCCcchhhhhccCCchhhHHHHhhhh--ccCceEEEecccCCccchHHHHHHHhcCCCCCCeEE
Q 046067          213 QRLGAYMLEGLIARLASSGSSIYKALRCKETATNGAIAEAMK--DENKIHIIDFLIAQGSQWIILIMALASRPGGPPHIR  290 (521)
Q Consensus       213 QRlAaYF~eAL~aRl~~sg~~~ykaL~~~~PtANqAIlEA~~--ge~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LR  290 (521)
                      +++|..|-+-+.+-+.     .|+       .-++.|.+-++  -.+.-||+|+|.|.|.-=    ..|+... ..|..+
T Consensus         5 ~~~a~~fdd~i~~~iP-----~Y~-------~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~----~~l~~~~-~~~~~~   67 (225)
T d1im8a_           5 ENVAEVFPDMIQRSVP-----GYS-------NIITAIGMLAERFVTADSNVYDLGCSRGAAT----LSARRNI-NQPNVK   67 (225)
T ss_dssp             HHHHHHHHHHHHHHST-----THH-------HHHHHHHHHHHHHCCTTCEEEEESCTTCHHH----HHHHHTC-CCSSCE
T ss_pred             chHHHHHHHHHHhcCC-----CHH-------HHHHHHHHHHHHhcCCCCEEEEeccchhhHH----HHHHHhh-cCCCCc
Confidence            6778888766443332     254       23444544443  235569999999998533    3344332 246889


Q ss_pred             EeeecCCCccccCCchHHHHHHHHHHHHHHcCCceEEEEeccccccccccccccCCCcEEEEEecCcccCCCCCcccccc
Q 046067          291 ITGIDDSTAAYARGGGLEIVGQRLSKLADLYKVPFEFNAAAISGSEVQLENLEVRPGEALAVNFSMMLHHMPDESVSIQN  370 (521)
Q Consensus       291 ITgI~~~~s~~~~~~~L~~~G~rL~~fA~~lgvpFeF~~V~~~~~ev~~~~L~~~~gEaLaVN~~~~LHhl~desvs~~n  370 (521)
                      |||||.+..      -++.+.+++.    ..+....++.+..+..++       ..+..-+|.|.+.|||++.+     +
T Consensus        68 v~giD~S~~------ml~~A~~~~~----~~~~~~~~~~~~~d~~~~-------~~~~~d~i~~~~~l~~~~~~-----d  125 (225)
T d1im8a_          68 IIGIDNSQP------MVERCRQHIA----AYHSEIPVEILCNDIRHV-------EIKNASMVILNFTLQFLPPE-----D  125 (225)
T ss_dssp             EEEECSCHH------HHHHHHHHHH----TSCCSSCEEEECSCTTTC-------CCCSEEEEEEESCGGGSCGG-----G
T ss_pred             eEEeCCCHH------HHHHHHHHhH----hhcccchhhhccchhhcc-------ccccceeeEEeeeccccChh-----h
Confidence            999998642      3555555454    334444444443332222       22344556677889998643     2


Q ss_pred             hHHHHHHHH-HhcCCcEEEEE
Q 046067          371 HRDRLLRLV-KGLSPKVVTLV  390 (521)
Q Consensus       371 ~rd~~L~~v-ksL~Pkvvtlv  390 (521)
                       +..+|+.| +.|+|.-..+.
T Consensus       126 -~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         126 -RIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             -HHHHHHHHHHHEEEEEEEEE
T ss_pred             -HHHHHHHHHHhCCCCceeec
Confidence             34677666 78999965443
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure