Citrus Sinensis ID: 046107

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK
Secondary Structure (PSIPRED)
ccEEEccEEccccccEEEcccccEEEEccccccccHHHHHHHHccccccEEEEEEccccEEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEEcccccccEEEEEccccccccEEEcccccEEEEEEEccccccccccccHHHHHHHHHcHHHHHHHHHcccccEEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEccccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEcccEccccEEEcccccEEEEEEccHHHEEEEEEcccccccEHHHHcccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHcHHHHHHHHHccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEccccEEEEEEcc
Coil and Loop (DISEMBL)
MIKIHLCHLIRFANdvieasdgslyitvsstkfapkayyldlvegephgqllrydpsskqVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIenlpggpdninlapdgsFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSangsiirefndpnakniSFVTSALEFQGNLYlasinsnfigklplk
Flexible Loop (DISEMBL)
MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEnlpggpdninLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSiirefndpnaKNISFVTSALEFQGNLylasinsnfigklplk
Low Complexity Region (SEG)
MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMstgkgaaakvvkvsangsIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK
Disordered region (IsUnstruct)
**KIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMN********************************GAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIG*****
Disordered Region (DISOPRED)
*I**HLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK
Disordered Region (DISEMBL)
MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSS**********RKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK
Disordered Region (DISPRO)
MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.933	0.503	0.334	3e-26
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.941	0.512	0.318	1e-25
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.924	0.550	0.331	3e-25
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.924	0.498	0.323	2e-24
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.924	0.497	0.309	4e-23
Q803F5	415	Adipocyte plasma membrane	yes	no	0.933	0.503	0.288	9e-21
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.941	0.507	0.286	9e-21
P94111	335	Strictosidine synthase 1	no	no	0.794	0.531	0.258	2e-14
P92976	329	Strictosidine synthase 3	no	no	0.790	0.537	0.254	1e-12
P18417	352	Strictosidine synthase OS	N/A	no	0.361	0.230	0.397	2e-10

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 15/224 (6%)

Query: 10  IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
           + F ND+    DG  +Y T SS+K+  + +   ++EG   G+LL YD  +K+V +++ GL
Sbjct: 196 LSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGL 255

Query: 69  YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
            F NGV LS   DFV+V E+   R  ++++    K   ++F+EN+PG PDNI L+  G +
Sbjct: 256 RFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGY 315

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHP---ELINQLMSTGK-----GAAAKVVKVSAN 180
           W+++       V   +   +    L E P    +I +L+S           + VV++S  
Sbjct: 316 WVAM------PVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLPKRSLVVELSET 369

Query: 181 GSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
           GS  R F+DP    + +V+ A E  G LYL S  S FI +L L+
Sbjct: 370 GSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNLQ 413

Gallus gallus (taxid: 9031)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 123/220 (55%), Gaps = 9/220 (4%)

Query: 10  IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
           + F ND+    DG  +Y T SS+K+  + Y L L+EG   G+LL YD  +K+V ++L+ L
Sbjct: 196 MSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHL 255

Query: 69  YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
            F NGV LS   DFV+V E    R  + ++    K   ++F+ENLPG PDNI  +  G +
Sbjct: 256 RFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGY 315

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGK-----GAAAKVVKVSANGSI 183
           W+S+  + ++   ++    + +  L+   ++I +L S           + V+++S +G+ 
Sbjct: 316 WVSMAAIRANPGFSMLDFLSERPFLK---KVIFKLFSQETVMKFVPRYSLVLELSDSGTF 372

Query: 184 IREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223
           +R  +DP  + +++V+ A E  G+LYL S  + ++ +L L
Sbjct: 373 LRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 19/226 (8%)

Query: 10  IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
           + F ND+    DG  +Y T SS+K+  + Y L ++EG   G+LL YD  +K+V ++L+ L
Sbjct: 157 MSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQL 216

Query: 69  YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
            F NGV LS   DFV+V E+   R  + ++    K   ++F+EN+PG PDNI  +  G +
Sbjct: 217 QFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGY 276

Query: 129 WISLIKMNSSAVETVHSSKNRKQL--LEEHP---ELINQLMSTGK-----GAAAKVVKVS 178
           W+        A  T+ ++     L  L + P    +I +L S           + V++VS
Sbjct: 277 WV--------AAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVS 328

Query: 179 ANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
            +G+  R  +DP+ + +++V+ A E  G LYL S  S FI +L L+
Sbjct: 329 DSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQ 374

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 19/226 (8%)

Query: 10  IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
           + F ND+    DG  +Y T SS+K+  + Y L ++E    G+LL YD  +K+V ++L+ L
Sbjct: 196 MSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQL 255

Query: 69  YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
            F NGV LS   DFV+V E+   R  + ++    K   ++F+EN+PG PDNI  +  G +
Sbjct: 256 QFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGY 315

Query: 129 WISLIKMNSSAVETVHSSKNRKQL--LEEHP---ELINQLMSTGK-----GAAAKVVKVS 178
           W+        A  T+ ++     L  L + P    +I ++ S           + V++VS
Sbjct: 316 WV--------AAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVS 367

Query: 179 ANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
            +G+  R  +DP+ + +++V+ A E  G LYL S  S FI +L L+
Sbjct: 368 DSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQ 413

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 19/226 (8%)

Query: 10  IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
           + F ND+    DG  +Y T SS+K+  + Y L ++EG   G+LL YD  +++V ++L+ L
Sbjct: 197 MSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQL 256

Query: 69  YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
            F NGV LS   DFV+V E+   R  + ++    K   ++F+EN+PG PDNI  +  G +
Sbjct: 257 RFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGY 316

Query: 129 WISLIKMNSSAVETVHSSKNRKQL--LEEHP---ELINQLMSTGK-----GAAAKVVKVS 178
           W+ +         T+  +     L  L E P    +I +L S           + V+++S
Sbjct: 317 WVGM--------STIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYSLVLELS 368

Query: 179 ANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
            +G+  R  +DP+    ++++   E  G+LYL S  S F+ +L L+
Sbjct: 369 DSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSLQ 414

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  100 bits (248), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 118/218 (54%), Gaps = 9/218 (4%)

Query: 12  FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
           F ND+    DG  +Y T SS+++  + +   ++E    G++L YD  +K+V++++E L F
Sbjct: 198 FVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRF 257

Query: 71  ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI 130
            NG+ L    + V+V E+   R  +  +   +K   + FIENLPG PDNI  +  G +W+
Sbjct: 258 PNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWV 317

Query: 131 SLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGK-----GAAAKVVKVSANGSIIR 185
           ++  +  +   ++    +++  L+   +LI +L S           + VV++ ++G+ +R
Sbjct: 318 AMSAVRPNPGFSMLDFLSQRPWLK---KLIFKLFSQDTLLKFVPRYSLVVELQSDGTCVR 374

Query: 186 EFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223
            F+DP     ++ + A E+ G+LYL S  S ++ KL L
Sbjct: 375 SFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDL 412

Danio rerio (taxid: 7955)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  100 bits (248), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 120/220 (54%), Gaps = 9/220 (4%)

Query: 10  IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
           + F ND+    DG  +Y T SS+++  + Y   ++E    G++L YD  +K+V++++E L
Sbjct: 197 LSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENL 256

Query: 69  YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
            FANG+ L    + V+V E+   R  +  +   +K   + F++NLPG PDNI  +  G +
Sbjct: 257 RFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGY 316

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG-----KGAAAKVVKVSANGSI 183
           W+++  +  +   ++    ++K  ++   +LI +L S           + V+++  +G+ 
Sbjct: 317 WVAMSAVRPNPGFSMLDFLSQKPWIK---KLIFKLFSQDVLMKFVPRYSLVIELQESGAC 373

Query: 184 IREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223
           +R F+DP+    ++V+ A E  G+LYL S  S ++ KL L
Sbjct: 374 MRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDL 413

Salmo salar (taxid: 8030)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 31/209 (14%)

Query: 17  IEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVAL 76
           ++ + G +Y T  S++F+P    + L   +  G+L +YDPS+K V++++EGL  + G A+
Sbjct: 150 VDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAV 209

Query: 77  SKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNI-NLAPDGSFWISLIKM 135
           S  G FV+V +  K    ++W+K       E F  ++   PDNI  +   G+FW++ +  
Sbjct: 210 SSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSV-SNPDNIKRIGSTGNFWVASVV- 267

Query: 136 NSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNI 195
                         K ++  +P                 VKV++NG +++     +    
Sbjct: 268 -------------NKIIVPTNPS---------------AVKVNSNGEVLQTIPLKDKFGD 299

Query: 196 SFVTSALEFQGNLYLASINSNFIGKLPLK 224
           + ++   EF+GNLY+ ++   F G L L+
Sbjct: 300 TLLSEVNEFEGNLYIGTLTGPFAGILKLE 328

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 31/208 (14%)

Query: 17  IEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVAL 76
           ++ + G +Y T  S+ F P+     +   +  G+  +YDPS K V++++EGL  + G A+
Sbjct: 152 VDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAV 211

Query: 77  SKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNI-NLAPDGSFWISLIKM 135
           S  G FV+V +  K    ++W+K       E F  ++   PDNI  +   G+FW++ + +
Sbjct: 212 SSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVS-NPDNIKRIGSTGNFWVASV-V 269

Query: 136 NSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNI 195
           NS+   T  S+                            VKVS+ G +++     +    
Sbjct: 270 NSATGPTNPSA----------------------------VKVSSAGKVLQTIPLKDKFGD 301

Query: 196 SFVTSALEFQGNLYLASINSNFIGKLPL 223
           + V+   E++G LY+ ++   F G L L
Sbjct: 302 TLVSEVNEYKGQLYIGALFGPFAGILKL 329

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 49  GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREI 108
           G+L++YDPS+K+ +++L+ L+   G  +S  G FVVV E    R +K+WL+ G K+    
Sbjct: 193 GRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLE-GPKKGSAE 251

Query: 109 FIENLPGGPDNINLAPDGSFWIS 131
           F+  +P  P NI    DG FW+S
Sbjct: 252 FLVTIP-NPGNIKRNSDGHFWVS 273

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Catharanthus roseus (taxid: 4058)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.946	0.576	0.611	7e-70
297738547	461	unnamed protein product [Vitis vinifera]	0.941	0.457	0.581	3e-68
297738546	382	unnamed protein product [Vitis vinifera]	0.937	0.549	0.606	3e-68
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.941	0.324	0.581	3e-68
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.937	0.575	0.606	3e-68
357450077	352	Adipocyte plasma membrane-associated pro	0.941	0.599	0.586	7e-68
118489288	275	unknown [Populus trichocarpa x Populus d	0.946	0.770	0.579	8e-68
388492006	352	unknown [Medicago truncatula]	0.941	0.599	0.586	9e-68
255550417	356	Adipocyte plasma membrane-associated pro	0.950	0.598	0.572	5e-67
388507342	352	unknown [Medicago truncatula]	0.941	0.599	0.582	1e-66

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 132/216 (61%), Positives = 167/216 (77%), Gaps = 4/216 (1%)

Query: 10  IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY 69
           IRFA+DVIEASDGSLY +V+S+KF    +YLDL+E +PHGQLL+YDP   + SI+L+ L 
Sbjct: 154 IRFADDVIEASDGSLYFSVASSKFGLHHWYLDLLEAKPHGQLLKYDPLLNETSIILDNLA 213

Query: 70  FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDR-EIFIENLPGGPDNINLAPDGSF 128
           F NGVALS+  DF+VVCE+WKFRC+K+WLK G+++ R E FI+NLP GPDNINLAPDGSF
Sbjct: 214 FPNGVALSQDEDFLVVCETWKFRCLKYWLK-GERKGRTETFIDNLPNGPDNINLAPDGSF 272

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN 188
           WI+LIK+ S   E VH+SK  K  L   P+L    +  G    A VVKV+A+G I+ +F+
Sbjct: 273 WIALIKLASDGFEFVHASKALKHFLATFPKLFQ--LVNGSNEKATVVKVAADGKIVDKFD 330

Query: 189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
           DPN K +SFVTSALEF+ +LYL S+N+NFIGKLPLK
Sbjct: 331 DPNGKVMSFVTSALEFEDHLYLGSLNTNFIGKLPLK 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/215 (58%), Positives = 169/215 (78%), Gaps = 4/215 (1%)

Query: 10  IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY 69
           IRFA+DVIEASDGSLY +V+S+KF    +YLD++E +PHGQLL+YDP   + SI+L+ L 
Sbjct: 247 IRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLA 306

Query: 70  FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDR-EIFIENLPGGPDNINLAPDGSF 128
           FANGVALS+  DF+VVCE+WKFRC+K+WLK G+++ R E+F++NLPGGPDNINLAPDGSF
Sbjct: 307 FANGVALSQDEDFLVVCETWKFRCLKYWLK-GERKGRTEVFVDNLPGGPDNINLAPDGSF 365

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN 188
           WI+L++++   +  VH+SK  K L+   P+L+   +  G    A VVKV A+G +++ FN
Sbjct: 366 WIALLELSREGMGFVHTSKASKHLVATFPKLLG--LVQGMQKKAMVVKVGADGKMMKRFN 423

Query: 189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223
           DPN   +SFVT+ALEF+ +LYL S+N+NFIGKLPL
Sbjct: 424 DPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPL 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 168/216 (77%), Gaps = 6/216 (2%)

Query: 10  IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY 69
           I+FANDVIEA+DGS+Y +V+ST+F    +YLD++E +PHGQLL+YDP   + SI+L+ L 
Sbjct: 170 IKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPLLNETSILLDNLA 227

Query: 70  FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDR-EIFIENLPGGPDNINLAPDGSF 128
           FANGVALS+  DF+VVCE+WKFRC+K+WL+ G+++ R E FI+NLPGGPDN+NLAPDGSF
Sbjct: 228 FANGVALSQDEDFLVVCETWKFRCLKYWLE-GERKGRTETFIDNLPGGPDNVNLAPDGSF 286

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN 188
           WI+LIK+ S   E VH+SK  K LL   P+L    +  G    A VVKV+A+G II +F+
Sbjct: 287 WIALIKVTSDGFEFVHTSKALKHLLATFPKLFQ--LVKGSHKKASVVKVAADGKIIDKFD 344

Query: 189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
           DPN K ISFVTSALEF+  LYL S+N+NFIG LPLK
Sbjct: 345 DPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPLK 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/215 (58%), Positives = 169/215 (78%), Gaps = 4/215 (1%)

Query: 10  IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY 69
           IRFA+DVIEASDGSLY +V+S+KF    +YLD++E +PHGQLL+YDP   + SI+L+ L 
Sbjct: 436 IRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLA 495

Query: 70  FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDR-EIFIENLPGGPDNINLAPDGSF 128
           FANGVALS+  DF+VVCE+WKFRC+K+WLK G+++ R E+F++NLPGGPDNINLAPDGSF
Sbjct: 496 FANGVALSQDEDFLVVCETWKFRCLKYWLK-GERKGRTEVFVDNLPGGPDNINLAPDGSF 554

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN 188
           WI+L++++   +  VH+SK  K L+   P+L+   +  G    A VVKV A+G +++ FN
Sbjct: 555 WIALLELSREGMGFVHTSKASKHLVATFPKLLG--LVQGMQKKAMVVKVGADGKMMKRFN 612

Query: 189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223
           DPN   +SFVT+ALEF+ +LYL S+N+NFIGKLPL
Sbjct: 613 DPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPL 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 168/216 (77%), Gaps = 6/216 (2%)

Query: 10  IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY 69
           I+FANDVIEA+DGS+Y +V+ST+F    +YLD++E +PHGQLL+YDP   + SI+L+ L 
Sbjct: 153 IKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPLLNETSILLDNLA 210

Query: 70  FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDR-EIFIENLPGGPDNINLAPDGSF 128
           FANGVALS+  DF+VVCE+WKFRC+K+WL+ G+++ R E FI+NLPGGPDN+NLAPDGSF
Sbjct: 211 FANGVALSQDEDFLVVCETWKFRCLKYWLE-GERKGRTETFIDNLPGGPDNVNLAPDGSF 269

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN 188
           WI+LIK+ S   E VH+SK  K LL   P+L    +  G    A VVKV+A+G II +F+
Sbjct: 270 WIALIKVTSDGFEFVHTSKALKHLLATFPKLFQ--LVKGSHKKASVVKVAADGKIIDKFD 327

Query: 189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
           DPN K ISFVTSALEF+  LYL S+N+NFIG LPLK
Sbjct: 328 DPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPLK 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 163/213 (76%), Gaps = 2/213 (0%)

Query: 12  FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA 71
           FA+D+IEASDG++Y +V STKF    +YLD++E  PHGQLLRY+P S +  IVL+ L FA
Sbjct: 140 FADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFA 199

Query: 72  NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
           NGVALSK  D++VVCE+WKFRC+KHWLK  +K   EIFIENLP GPDNINLAPDGSFWI+
Sbjct: 200 NGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPDNINLAPDGSFWIA 259

Query: 132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPN 191
           LI++ S  +  VH+SK  K L+   P L+N + S  K  +A VVKV+  G+II++F D +
Sbjct: 260 LIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSVTK--SAMVVKVTTEGNIIKKFGDND 317

Query: 192 AKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
            K I+FVTSA+EF+ NLYL S+N++F+GK PL+
Sbjct: 318 GKKITFVTSAVEFEDNLYLGSLNTDFVGKFPLQ 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489288|gb|ABK96449.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 124/214 (57%), Positives = 166/214 (77%), Gaps = 2/214 (0%)

Query: 10  IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY 69
           IRFA++VIE+SDGSLY +V+STKF    +YLD++E +PHGQLL+YDPS  + SI+L+GL 
Sbjct: 59  IRFADEVIESSDGSLYFSVASTKFGFHDWYLDVLEAKPHGQLLKYDPSLYETSILLDGLC 118

Query: 70  FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFW 129
           F NGVALS+  D++V CE+WK+RC K+WLK  DK   EIFI+NLPGGPDNI LAPDGSFW
Sbjct: 119 FPNGVALSREEDYLVFCETWKYRCQKYWLKGTDKGKTEIFIDNLPGGPDNIYLAPDGSFW 178

Query: 130 ISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFND 189
           I+++++ S  +E VH SK  K L+   P+L+N ++  G    A VV V+A+G I R+F+D
Sbjct: 179 IAVLQVASKGLEFVHRSKPSKHLVASFPKLVNLVI--GVKRKATVVNVAADGKITRKFDD 236

Query: 190 PNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223
           P+ K +SFVT+A EF+ +LYL S+N+NFIGKLPL
Sbjct: 237 PDGKVMSFVTTAFEFEDHLYLGSLNTNFIGKLPL 270

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula]

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 163/213 (76%), Gaps = 2/213 (0%)

Query: 12  FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA 71
           FA+D+IEASDG++Y +V STKF    +YLD++E  PHGQLLRY+P S +  IVL+ L FA
Sbjct: 140 FADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFA 199

Query: 72  NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
           NGVALSK  D++VVCE+WKFRC+KHWLK  +K   EIFIENLP GPDNINLAPDGSFWI+
Sbjct: 200 NGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPDNINLAPDGSFWIA 259

Query: 132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPN 191
           LI++ S  +  VH+SK  K L+   P L+N + S  K  +A VVKV+  G+II++F D +
Sbjct: 260 LIQVTSERMGFVHTSKVSKYLVALFPRLVNMINSVTK--SAMVVKVTTEGNIIKKFGDND 317

Query: 192 AKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
            K I+FVTSA+EF+ NLYL S+N++F+GK PL+
Sbjct: 318 GKKITFVTSAVEFEDNLYLGSLNTDFVGKFPLQ 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis]

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/215 (57%), Positives = 160/215 (74%), Gaps = 2/215 (0%)

Query: 10  IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY 69
           I+FA+D IE+SDG++Y +V STKF    +YLD++E  PHGQLL+YDP+S Q S++L+GL 
Sbjct: 142 IKFADDAIESSDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLKYDPTSNQTSVLLDGLC 201

Query: 70  FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFW 129
           F NGVALS   D++V CESWKFRC KHWLK  DK   E  I+NLPG PDNINLAPDGSFW
Sbjct: 202 FPNGVALSWEEDYLVFCESWKFRCQKHWLKGEDKGKTETLIDNLPGAPDNINLAPDGSFW 261

Query: 130 ISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFND 189
           I L+++ +  +E VH+SK  K L+   P+LI   +  G    A VV V+A+G I R+F+D
Sbjct: 262 ICLLQVAADGLEFVHTSKASKHLVASFPKLIE--LVNGVEKNAMVVNVAADGKITRKFDD 319

Query: 190 PNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
           P+ K +SFVTSA+EF G+LYL S+ +NF+GKLPLK
Sbjct: 320 PDGKVVSFVTSAVEFDGHLYLGSLKNNFVGKLPLK 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507342|gb|AFK41737.1| unknown [Medicago truncatula]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/213 (58%), Positives = 161/213 (75%), Gaps = 2/213 (0%)

Query: 12  FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA 71
           FA+D+IEASDG++Y +V STKF    +YLD++E  PHGQLLRY+P S +  IVL+ L FA
Sbjct: 140 FADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFA 199

Query: 72  NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
           NGVALSK  D++VVCE+WKFRC+KHWLK  +K   EIFIENLP GPDNINLAPDGSFWI+
Sbjct: 200 NGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPDNINLAPDGSFWIA 259

Query: 132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPN 191
           LI++ S  +  VH+ K  K L+   P L+N + S  K   A VVKV+  G+II++F D +
Sbjct: 260 LIQVTSERMGFVHTFKVSKHLVALFPRLVNMINSVTK--FAMVVKVTTEGNIIKKFGDND 317

Query: 192 AKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
            K I+FVTSA+EF+ NLYL S+N++F+GK PL+
Sbjct: 318 GKKITFVTSAVEFEDNLYLGSLNTDFVGKFPLQ 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.540	0.327	0.388	3e-24
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.946	0.514	0.306	8.2e-24
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.950	0.513	0.305	2.7e-23
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.941	0.508	0.306	3.5e-23
RGD|1308874	376	Apmap "adipocyte plasma membra	0.950	0.566	0.305	1e-22
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.950	0.551	0.305	1e-22
UNIPROTKB|H0Y512	409	APMAP "Adipocyte plasma membra	0.540	0.295	0.377	1e-22
UNIPROTKB|G1K318	414	C3H20orf3 "Uncharacterized pro	0.937	0.507	0.306	4.9e-22
MGI|MGI:1919131	415	Apmap "adipocyte plasma membra	0.950	0.513	0.296	8.5e-22
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.593	0.330	0.388	1.6e-21

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
 Identities = 49/126 (38%), Positives = 81/126 (64%)

Query:    10 IRFA-NDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG 67
             +RF   D +  +D G LY T +S+K+    +  D +EG+PHG+++ +DP+++   ++L+ 
Sbjct:   155 VRFKLTDAVTVADNGVLYFTDASSKYDFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKD 214

Query:    68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS 127
             LYFANG+++S      V CE+   RC K+++   ++R  E+FI+ LPG PDNI    DG 
Sbjct:   215 LYFANGISMSPDQTHFVFCETIMRRCSKYYIS--EERV-EVFIQGLPGYPDNIRYDGDGH 271

Query:   128 FWISLI 133
             +WI+LI
Sbjct:   272 YWIALI 277

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 274 (101.5 bits), Expect = 8.2e-24, P = 8.2e-24
 Identities = 66/215 (30%), Positives = 113/215 (52%)

Query:    12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
             F ND+    DG  +Y T SS+K+  + Y L L+EG   G+LL YD  +K+V ++L+ L F
Sbjct:   198 FLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRF 257

Query:    71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI 130
              NGV LS   DFV+V E    R  + ++    K   ++F+ENLPG PDNI  +  G +W+
Sbjct:   258 PNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWV 317

Query:   131 SLIKMNSSAVETVHSSKNRKQLLEEHP-ELINQ-LMXXXXXXXXXXXXXXXXXXIIREFN 188
             S+  + ++   ++    + +  L++   +L +Q  +                   +R  +
Sbjct:   318 SMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLH 377

Query:   189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL 223
             DP  + +++V+ A E  G+LYL S  + ++ +L L
Sbjct:   378 DPEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 270 (100.1 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 66/216 (30%), Positives = 108/216 (50%)

Query:    12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
             F ND+    DG  +Y T SS+K+  + Y L ++EG   G+LL YD  +K+V ++L+ L F
Sbjct:   198 FVNDLTITQDGKKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRF 257

Query:    71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI 130
              NGV LS   DFV+V E+   R  + ++    K   ++F+ENLPG PDNI  +  G +W+
Sbjct:   258 PNGVQLSPEEDFVLVAETTMARIRRFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWV 317

Query:   131 SLIKMNSS-AVETVHSSKNRKQLLEEHPELINQ-LMXXXXXXXXXXXXXXXXXXIIREFN 188
              +  + S+     +     R  +     +L +Q  +                    R  +
Sbjct:   318 GMATIRSNPGFSMLDFLSERPYIKRMIFKLFSQETVMKFVPRYSLVLELSNSGAFRRSLH 377

Query:   189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
             DP  +  S+V+   E+ G+LYL S  + F+ +L L+
Sbjct:   378 DPTGQVASYVSEVHEYNGHLYLGSFRAPFLCRLSLQ 413

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 269 (99.8 bits), Expect = 3.5e-23, P = 3.5e-23
 Identities = 68/222 (30%), Positives = 116/222 (52%)

Query:    10 IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
             + F ND+    DG  +Y T SS+K+  + +   ++EG   G+LL YD  +K+V +++ GL
Sbjct:   196 LSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGL 255

Query:    69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
              F NGV LS   DFV+V E+   R  ++++    K   ++F+EN+PG PDNI L+  G +
Sbjct:   256 RFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGY 315

Query:   129 WISL--IKMNS--SAVETVHSSKNRKQLLEE--HPELINQLMXXXXXXXXXXXXXXXXXX 182
             W+++  ++ N   S ++ +      K+++ +    E + +L+                  
Sbjct:   316 WVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLPKRSLVVELSETGSYR-- 373

Query:   183 IIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
               R F+DP    + +V+ A E  G LYL S  S FI +L L+
Sbjct:   374 --RSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNLQ 413

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 66/216 (30%), Positives = 112/216 (51%)

Query:    12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
             F ND+    DG  +Y T SS+K+  + Y L ++EG   G+LL YD  +K+V ++L+ L F
Sbjct:   159 FVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQF 218

Query:    71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI 130
              NGV LS   DFV+V E+   R  + ++    K   ++F+EN+PG PDNI  +  G +W+
Sbjct:   219 PNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV 278

Query:   131 SLIKMNSSAVETVHSSKNRKQLLEEHP-ELINQ-LMXXXXXXXXXXXXXXXXXXIIREFN 188
             +   + ++   ++    + K  ++    +L +Q  +                    R  +
Sbjct:   279 AAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLH 338

Query:   189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
             DP+ + +++V+ A E  G LYL S  S FI +L L+
Sbjct:   339 DPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQ 374

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 66/216 (30%), Positives = 112/216 (51%)

Query:    12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
             F ND+    DG  +Y T SS+K+  + Y L ++EG   G+LL YD  +K+V ++L+ L F
Sbjct:   169 FVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQF 228

Query:    71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI 130
              NGV LS   DFV+V E+   R  + ++    K   ++F+EN+PG PDNI  +  G +W+
Sbjct:   229 PNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV 288

Query:   131 SLIKMNSSAVETVHSSKNRKQLLEEHP-ELINQ-LMXXXXXXXXXXXXXXXXXXIIREFN 188
             +   + ++   ++    + K  ++    +L +Q  +                    R  +
Sbjct:   289 AAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLH 348

Query:   189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
             DP+ + +++V+ A E  G LYL S  S FI +L L+
Sbjct:   349 DPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQ 384

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|H0Y512 APMAP "Adipocyte plasma membrane-associated protein" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
 Identities = 46/122 (37%), Positives = 73/122 (59%)

Query:    12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
             F ND+    DG  +Y T SS+K+  + Y L ++EG   G+LL YD  +++V ++L+ L F
Sbjct:   184 FVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRF 243

Query:    71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI 130
              NGV LS   DFV+V E+   R  + ++    K   ++F+EN+PG PDNI  +  G +W+
Sbjct:   244 PNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWV 303

Query:   131 SL 132
              +
Sbjct:   304 GM 305

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|G1K318 C3H20orf3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 4.9e-22, P = 4.9e-22
 Identities = 68/222 (30%), Positives = 115/222 (51%)

Query:    10 IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
             + F ND+    DG  +Y T SS+K+  + +   ++EG   G LL YD  +K+V +++ GL
Sbjct:   196 LSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDG-LLEYDTVTKEVKVLMVGL 254

Query:    69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
              F NGV LS   DFV+V E+   R  ++++    K   ++F+EN+PG PDNI L+  G +
Sbjct:   255 RFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGY 314

Query:   129 WISL--IKMNS--SAVETVHSSKNRKQLLEE--HPELINQLMXXXXXXXXXXXXXXXXXX 182
             W+++  ++ N   S ++ +      K+++ +    E + +L+                  
Sbjct:   315 WVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLPKRSLVVELSETGSYR-- 372

Query:   183 IIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
               R F+DP    + +V+ A E  G LYL S  S FI +L L+
Sbjct:   373 --RSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNLQ 412

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1919131 Apmap "adipocyte plasma membrane associated protein" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 8.5e-22, P = 8.5e-22
 Identities = 64/216 (29%), Positives = 111/216 (51%)

Query:    12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
             F ND+    DG  +Y T SS+K+  + Y L ++E    G+LL YD  +K+V ++L+ L F
Sbjct:   198 FVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQF 257

Query:    71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI 130
              NGV LS   DFV+V E+   R  + ++    K   ++F+EN+PG PDNI  +  G +W+
Sbjct:   258 PNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV 317

Query:   131 SLIKMNSSAVETVHSSKNRKQLLEEHP-ELINQ-LMXXXXXXXXXXXXXXXXXXIIREFN 188
             +   + ++   ++    + K  ++    ++ +Q  +                    R  +
Sbjct:   318 AAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLH 377

Query:   189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
             DP+ + +++V+ A E  G LYL S  S FI +L L+
Sbjct:   378 DPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQ 413

GO:0004064 "arylesterase activity" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 52/134 (38%), Positives = 81/134 (60%)

Query:    10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY 69
             I FAND+    +GS++ T +S ++    ++  L+EGE  G+LLRYDP +K   IVLEGL 
Sbjct:   195 ILFANDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYDPPTKTTHIVLEGLA 254

Query:    70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFW 129
             F NG+ LSK   F++  E+   R +K+WL+ G K      + +LPG PDN+ +  +G FW
Sbjct:   255 FPNGIQLSKDQSFLLFTETTNCRLVKYWLE-GPKMGEVEVVADLPGFPDNVRINEEGQFW 313

Query:   130 ISLIKMNSSAVETV 143
             +++    + A E +
Sbjct:   314 VAIDCCRTPAQEVL 327

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016422001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (368 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	2e-25
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	3e-17
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	8e-08
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	1e-04

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 94.8 bits (236), Expect = 2e-25
 Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGV 74
          DV     G LY T SS+++  +     ++EG+  G+L++YDPS+K   ++L+ LYF NG+
Sbjct: 4  DVDP-ETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGI 62

Query: 75 ALSKHGDFVVVCESWKFRCIKHWLK 99
          ALS  G FV+ CE+   R  K+W+K
Sbjct: 63 ALSPDGSFVLFCETPMKRISKYWIK 87

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 9   LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
           L R  ND +   DG ++            + L   E  P G L R DP    V ++ + L
Sbjct: 110 LNRP-NDGVVDPDGRIWFG------DMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162

Query: 69  YFANGVALSKHGDFVVVCESWKFRCIKHWLKLG----DKRDREIFIENLPGGPDNINLAP 124
              NG+A S  G  + V ++   R  ++ L         R   +  +  PG PD + +  
Sbjct: 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222

Query: 125 DGSFWISLI 133
           DG+ W++ +
Sbjct: 223 DGNLWVAAV 231

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 21/129 (16%)

Query: 9   LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
           L RF ND     DG  +               D+  G   G L R DP  K V  VL+G+
Sbjct: 84  LNRF-NDGKVDPDGRFWFGTMG---------FDIAPGGEPGALYRLDPDGK-VERVLDGI 132

Query: 69  YFANGVALSKHGDFVVVCES-----WKFRCIKHWLKLGDKRDREIFI--ENLPGGPDNIN 121
             +NG+A S  G  +   +S     W F        + ++R   +F   ++  G PD + 
Sbjct: 133 TISNGLAWSPDGKTLYFADSPTRRIWAFDYDADGGLISNRR---VFADFKDGDGEPDGMA 189

Query: 122 LAPDGSFWI 130
           +  +G+ W+
Sbjct: 190 VDAEGNVWV 198

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 47  PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRD- 105
             G++ R DP + +  +      F++G  +   G  ++ CE        H ++L D    
Sbjct: 45  LGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGG-RLIACE--------HGVRLLDPDTG 95

Query: 106 --REIFIENLPGGPDN----INLAPDGSFWIS 131
               +  E   G P N      + PDG  W  
Sbjct: 96  GKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG 127

Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.94
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.86
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.7
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.65
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.54
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.48
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.44
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	99.25
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.23
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
PRK11028	330	6-phosphogluconolactonase; Provisional	99.15
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.14
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.11
COG3391	381	Uncharacterized conserved protein [Function unknow	99.09
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.04
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.01
COG3391	381	Uncharacterized conserved protein [Function unknow	98.99
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.96
PRK11028	330	6-phosphogluconolactonase; Provisional	98.94
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.89
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.75
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.73
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.66
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.65
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.56
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.43
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.38
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.36
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.3
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.18
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.17
PRK04792	448	tolB translocation protein TolB; Provisional	98.17
PRK05137	435	tolB translocation protein TolB; Provisional	98.16
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.12
PRK03629	429	tolB translocation protein TolB; Provisional	98.09
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.07
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.06
PRK02889	427	tolB translocation protein TolB; Provisional	98.04
PRK05137	435	tolB translocation protein TolB; Provisional	98.02
PRK00178	430	tolB translocation protein TolB; Provisional	97.99
PRK04792	448	tolB translocation protein TolB; Provisional	97.96
PRK04922	433	tolB translocation protein TolB; Provisional	97.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.94
PRK04043	419	tolB translocation protein TolB; Provisional	97.93
PRK03629	429	tolB translocation protein TolB; Provisional	97.92
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.92
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.92
PRK01742	429	tolB translocation protein TolB; Provisional	97.88
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.87
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.86
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.84
PRK02888	635	nitrous-oxide reductase; Validated	97.83
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.8
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.73
PRK04922	433	tolB translocation protein TolB; Provisional	97.72
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.69
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.68
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.67
PRK02889	427	tolB translocation protein TolB; Provisional	97.66
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.65
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.65
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.65
PRK01029	428	tolB translocation protein TolB; Provisional	97.62
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.6
PRK00178	430	tolB translocation protein TolB; Provisional	97.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.58
PRK02888	635	nitrous-oxide reductase; Validated	97.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.58
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.57
PRK04043	419	tolB translocation protein TolB; Provisional	97.55
PRK01742	429	tolB translocation protein TolB; Provisional	97.51
COG3211	616	PhoX Predicted phosphatase [General function predi	97.5
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.5
KOG0266	456	consensus WD40 repeat-containing protein [General	97.49
PRK01029	428	tolB translocation protein TolB; Provisional	97.49
KOG0266	456	consensus WD40 repeat-containing protein [General	97.46
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.46
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.46
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.44
COG3211	616	PhoX Predicted phosphatase [General function predi	97.41
PTZ00421	493	coronin; Provisional	97.4
KOG0289	506	consensus mRNA splicing factor [General function p	97.36
PTZ00420	568	coronin; Provisional	97.36
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.31
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.29
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.29
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.23
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.23
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.2
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.17
COG4946	668	Uncharacterized protein related to the periplasmic	97.05
PRK13616	591	lipoprotein LpqB; Provisional	96.99
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.97
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.95
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.93
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	96.92
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.91
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	96.88
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.87
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.86
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.82
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.81
PTZ00420	568	coronin; Provisional	96.79
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.73
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	96.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.64
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.6
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.58
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.5
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.47
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.43
KOG0315	311	consensus G-protein beta subunit-like protein (con	96.4
KOG0318	603	consensus WD40 repeat stress protein/actin interac	96.38
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	96.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.3
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.24
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	96.22
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.18
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.15
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.11
KOG2139	445	consensus WD40 repeat protein [General function pr	96.04
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.04
KOG2055	514	consensus WD40 repeat protein [General function pr	96.0
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.97
PTZ00421	493	coronin; Provisional	95.89
KOG0286	343	consensus G-protein beta subunit [General function	95.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.65
KOG2055	514	consensus WD40 repeat protein [General function pr	95.62
KOG0640	430	consensus mRNA cleavage stimulating factor complex	95.56
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.44
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.37
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.35
KOG0772	641	consensus Uncharacterized conserved protein, conta	95.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.3
PLN00181	793	protein SPA1-RELATED; Provisional	95.12
PRK13616	591	lipoprotein LpqB; Provisional	95.12
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.12
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.01
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	94.94
KOG1274	933	consensus WD40 repeat protein [General function pr	94.92
KOG1215	877	consensus Low-density lipoprotein receptors contai	94.83
PRK13684	334	Ycf48-like protein; Provisional	94.79
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	94.77
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.64
KOG3881	412	consensus Uncharacterized conserved protein [Funct	94.59
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.59
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	94.55
PHA02713	557	hypothetical protein; Provisional	94.53
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.46
KOG1273	405	consensus WD40 repeat protein [General function pr	94.27
KOG0263	707	consensus Transcription initiation factor TFIID, s	94.24
KOG0293	519	consensus WD40 repeat-containing protein [Function	94.23
PLN00181	793	protein SPA1-RELATED; Provisional	94.23
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.21
KOG2139	445	consensus WD40 repeat protein [General function pr	94.15
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	94.12
KOG0278	334	consensus Serine/threonine kinase receptor-associa	94.09
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	93.95
KOG2110	391	consensus Uncharacterized conserved protein, conta	93.89
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.85
KOG2048	691	consensus WD40 repeat protein [General function pr	93.83
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	93.78
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	93.73
KOG2315	566	consensus Predicted translation initiation factor	93.69
PRK10115	686	protease 2; Provisional	93.66
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	93.64
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.59
KOG0289	506	consensus mRNA splicing factor [General function p	93.54
KOG1539	910	consensus WD repeat protein [General function pred	93.4
KOG1274	933	consensus WD40 repeat protein [General function pr	93.35
KOG0303	472	consensus Actin-binding protein Coronin, contains	93.35
COG3292	671	Predicted periplasmic ligand-binding sensor domain	93.3
KOG0278	334	consensus Serine/threonine kinase receptor-associa	93.23
COG4946	668	Uncharacterized protein related to the periplasmic	93.13
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.08
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.95
PRK13684	334	Ycf48-like protein; Provisional	92.9
KOG1273	405	consensus WD40 repeat protein [General function pr	92.9
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.65
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.54
KOG0315	311	consensus G-protein beta subunit-like protein (con	92.35
KOG0283	712	consensus WD40 repeat-containing protein [Function	92.32
KOG1407	313	consensus WD40 repeat protein [Function unknown]	92.27
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.01
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	91.95
KOG0286	343	consensus G-protein beta subunit [General function	91.75
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.67
KOG0640	430	consensus mRNA cleavage stimulating factor complex	91.66
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	91.6
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	91.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.21
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.16
PHA02713	557	hypothetical protein; Provisional	91.11
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.09
KOG0772	641	consensus Uncharacterized conserved protein, conta	91.03
KOG0316	307	consensus Conserved WD40 repeat-containing protein	90.84
KOG0296	399	consensus Angio-associated migratory cell protein	90.67
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	90.64
KOG0294	362	consensus WD40 repeat-containing protein [Function	90.63
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.54
KOG0302	440	consensus Ribosome Assembly protein [General funct	90.24
KOG0973	942	consensus Histone transcription regulator HIRA, WD	90.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.96
KOG2096	420	consensus WD40 repeat protein [General function pr	89.56
PHA03098	534	kelch-like protein; Provisional	89.31
KOG0973	942	consensus Histone transcription regulator HIRA, WD	89.23
PF07494	24	Reg_prop: Two component regulator propeller; Inter	89.16
KOG0275	508	consensus Conserved WD40 repeat-containing protein	88.63
KOG0284	464	consensus Polyadenylation factor I complex, subuni	88.3
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.3
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	87.88
PHA02790	480	Kelch-like protein; Provisional	87.54
KOG0646	476	consensus WD40 repeat protein [General function pr	87.53
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	87.48
KOG0296	399	consensus Angio-associated migratory cell protein	87.3
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	87.1
TIGR02608	55	delta_60_rpt delta-60 repeat domain. This domain o	86.42
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	86.4
KOG3881	412	consensus Uncharacterized conserved protein [Funct	86.38
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	86.22
KOG0279	315	consensus G protein beta subunit-like protein [Sig	86.08
KOG0639	705	consensus Transducin-like enhancer of split protei	86.03
KOG0288	459	consensus WD40 repeat protein TipD [General functi	85.97
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	85.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	85.59
KOG1215	877	consensus Low-density lipoprotein receptors contai	85.58
PF15416	442	DUF4623: Domain of unknown function (DUF4623)	85.36
KOG2106	626	consensus Uncharacterized conserved protein, conta	85.25
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	84.83
KOG0301	745	consensus Phospholipase A2-activating protein (con	84.78
KOG0646	476	consensus WD40 repeat protein [General function pr	84.64
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	84.41
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	84.14
PHA03098	534	kelch-like protein; Provisional	83.73
KOG2106	626	consensus Uncharacterized conserved protein, conta	83.54
KOG4328	498	consensus WD40 protein [Function unknown]	83.53
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	83.14
KOG0284	464	consensus Polyadenylation factor I complex, subuni	83.08
KOG2111	346	consensus Uncharacterized conserved protein, conta	82.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	82.41
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	82.21
KOG0283	712	consensus WD40 repeat-containing protein [Function	82.16
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	81.81
KOG1407	313	consensus WD40 repeat protein [Function unknown]	81.46
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.13
COG5276	370	Uncharacterized conserved protein [Function unknow	81.03
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	80.79

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=2.1e-36  Score=250.65  Aligned_cols=222  Identities=32%  Similarity=0.575  Sum_probs=201.4

Q ss_pred             eeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCE
Q 046107            3 KIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDF   82 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~   82 (224)
                      ...+|.++.+.|++.++++|.|||||++.+|.++++...+++..++|++++||+.+...+++.+++.+|||+++|||+++
T Consensus       153 ~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sf  232 (376)
T KOG1520|consen  153 DEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSF  232 (376)
T ss_pred             ccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCE
Confidence            35689999999999999999999999999999999999999999999999999997777888999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      +.++++...+|.||++.|.+.++.++|++++||+||||..+++|++||+-...++...+++..+|++|++++.++...+.
T Consensus       233 vl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~  312 (376)
T KOG1520|consen  233 VLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMEL  312 (376)
T ss_pred             EEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhh
Confidence            99999999999999999988889999998899999999999999999999999999999999999999999998765443


Q ss_pred             hhh--cCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeCC
Q 046107          163 LMS--TGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       163 ~~~--~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~~  224 (224)
                      ++.  ....+|..|.+.|.+|++++++++.+|..+..++.+.+++|.||++|..+++|+|++|+
T Consensus       313 ~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl~  376 (376)
T KOG1520|consen  313 LYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKLP  376 (376)
T ss_pred             hhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence            222  22233478888989999999999999988888888778899999999999999999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.94  E-value=3.1e-25  Score=180.36  Aligned_cols=155  Identities=31%  Similarity=0.502  Sum_probs=123.8

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ++..|||++++++|+||||++......         ....|.||+++++ ++++.+.+++..||||+++||++.|||+++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence            899999999999999999997622110         0111899999998 888888889999999999999999999999


Q ss_pred             CCCeEEEEEccC--CCcccceEeeccC--CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           89 WKFRCIKHWLKL--GDKRDREIFIENL--PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        89 ~~~~I~~~~~~~--~~~~~~~~~~~~~--~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                      ..++|++|+++.  ..+...+++++..  .+.||||++|++|+||+|....                             
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----------------------------  204 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----------------------------  204 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----------------------------
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----------------------------
Confidence            999999999973  3355666775432  2369999999999999999977                             


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE---CCEEEEEeC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF---QGNLYLASI  213 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~---~g~lyv~~~  213 (224)
                             ++|.+++|+|+++..+..|..    .+|.+++.   .++|||++.
T Consensus       205 -------~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  205 -------GRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -------TEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred             -------CEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence                   799999999999999988832    47777763   488999985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.94  E-value=7.6e-25  Score=182.15  Aligned_cols=170  Identities=25%  Similarity=0.372  Sum_probs=130.1

Q ss_pred             eeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCE
Q 046107            3 KIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDF   82 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~   82 (224)
                      +..++.+.+.|||+.++++|++||++++. +.     ....+..+.|+|||+++.++..+.+.+.+..||||||||||+.
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCE
Confidence            34567889999999999999999999872 10     1222446788999999974444444445999999999999999


Q ss_pred             EEEEeCCCCeEEEEEccC--CCcccce--EeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           83 VVVCESWKFRCIKHWLKL--GDKRDRE--IFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~--~~~~~~~--~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                      ||++|+..++|++|+.+.  .......  ++.+..++.|||+++|++|++|++.....                      
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g----------------------  234 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG----------------------  234 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC----------------------
Confidence            999999999999999862  2233333  33334578999999999999997555441                      


Q ss_pred             hHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE---CCEEEEEeCCCCe
Q 046107          159 LINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF---QGNLYLASINSNF  217 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~---~g~lyv~~~~~~~  217 (224)
                                   +.|.+++|+|+++..+..|..    .+|++++.   .++||+++...+.
T Consensus       235 -------------~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         235 -------------GRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             -------------ceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCC
Confidence                         589999999999999999863    34454544   4999999988744

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.86  E-value=3.5e-21  Score=130.77  Aligned_cols=87  Identities=47%  Similarity=0.892  Sum_probs=73.5

Q ss_pred             cceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107           14 NDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        14 n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      ||++++++ |.|||||++.+|...++..++++..++|+|+++||++++.+.+++++.+||||++++|+++|+|+++...+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            68999998 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccC
Q 046107           93 CIKHWLKL  100 (224)
Q Consensus        93 I~~~~~~~  100 (224)
                      |.||+++|
T Consensus        81 i~rywl~G   88 (89)
T PF03088_consen   81 ILRYWLKG   88 (89)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEEeC
Confidence            99999976

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=1.1e-15  Score=119.51  Aligned_cols=155  Identities=20%  Similarity=0.281  Sum_probs=122.5

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      +..||--++|+|+.|...|+. ++.      .+ ..-.|.|+++-+. ++++.+.+....+|||+|+-|-+..|+.|+.+
T Consensus       109 nR~NDgkvdP~Gryy~GtMad-~~~------~l-e~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMAD-FGD------DL-EPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             cccccCccCCCCceeeeeecc-ccc------cc-cccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCc
Confidence            456788999999999998862 221      11 1235677777775 78999999999999999999999999999999


Q ss_pred             CeE--EEEEccCCCcccceEeecc------CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           91 FRC--IKHWLKLGDKRDREIFIEN------LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        91 ~~I--~~~~~~~~~~~~~~~~~~~------~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      ..|  +.|+..++.+.+.+++++-      .+-.||||++|.+|+|||+.+.+                           
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng---------------------------  232 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG---------------------------  232 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC---------------------------
Confidence            999  4455666667777776642      12379999999999999999998                           


Q ss_pred             hhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEEC---CEEEEEeCC
Q 046107          163 LMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQ---GNLYLASIN  214 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~---g~lyv~~~~  214 (224)
                               ++|+++||. ||++..+..|..    .+|++++.+   +-+|++...
T Consensus       233 ---------~~V~~~dp~tGK~L~eiklPt~----qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  233 ---------GTVQKVDPTTGKILLEIKLPTP----QITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             ---------cEEEEECCCCCcEEEEEEcCCC----ceEEEEecCCCccEEEEEehh
Confidence                     899999986 999999988854    478888665   568888743

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.67  E-value=1.4e-15  Score=121.49  Aligned_cols=154  Identities=16%  Similarity=0.195  Sum_probs=120.5

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      =..|.+|+.++||.+||+..                 ..|.+-|+||.+|+++... .....|.||.+.|||. +|++|+
T Consensus        61 G~ap~dvapapdG~VWft~q-----------------g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~  122 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQ-----------------GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDT  122 (353)
T ss_pred             CCCccccccCCCCceEEecC-----------------ccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecC
Confidence            34678999999999999974                 3678889999999998774 5578899999999998 999998


Q ss_pred             CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCC
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGK  168 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  168 (224)
                      .. .|.|++.+.....+..+-.+.....-+-..+|++|++|++...+                                 
T Consensus       123 ~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G---------------------------------  168 (353)
T COG4257         123 GL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIG---------------------------------  168 (353)
T ss_pred             cc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccc---------------------------------
Confidence            76 99999986533222222122223455778899999999987654                                 


Q ss_pred             CceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-ECCEEEEEeCCCCeEEEee
Q 046107          169 GAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-FQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       169 ~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-~~g~lyv~~~~~~~i~~~~  222 (224)
                          .--|+||.-..++++..|.|.   .+..+|. -+|.+|++++.+|+|++++
T Consensus       169 ----~yGrLdPa~~~i~vfpaPqG~---gpyGi~atpdGsvwyaslagnaiarid  216 (353)
T COG4257         169 ----AYGRLDPARNVISVFPAPQGG---GPYGICATPDGSVWYASLAGNAIARID  216 (353)
T ss_pred             ----cceecCcccCceeeeccCCCC---CCcceEECCCCcEEEEeccccceEEcc
Confidence                223999999999999999875   4555554 4899999999999999986

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.65  E-value=3e-14  Score=136.17  Aligned_cols=159  Identities=18%  Similarity=0.228  Sum_probs=116.7

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe---------------cCccccc
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL---------------EGLYFAN   72 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~---------------~~~~~pn   72 (224)
                      .++.|.+|++++ +|.+|+++..                 .++|++++..++.+..+.               ..+..|+
T Consensus       681 ~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~  743 (1057)
T PLN02919        681 VLNSPWDVCFEPVNEKVYIAMAG-----------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS  743 (1057)
T ss_pred             hcCCCeEEEEecCCCeEEEEECC-----------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCcc
Confidence            378899999998 6899999854                 456777776655444321               1356799


Q ss_pred             eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee--------------c--c-----CCCCCCceEECCCCCEEEE
Q 046107           73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI--------------E--N-----LPGGPDNINLAPDGSFWIS  131 (224)
Q Consensus        73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~--------------~--~-----~~~~p~~i~~d~dG~l~va  131 (224)
                      ||+++|||++|||+++.+++|.+++++++..   ..+.              +  +     ....|.+++++++|++||+
T Consensus       744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~---~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA  820 (1057)
T PLN02919        744 GISLSPDLKELYIADSESSSIRALDLKTGGS---RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA  820 (1057)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEECCCCcE---EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence            9999999999999999999999999864211   1110              0  0     1126999999999999999


Q ss_pred             EecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCC------CC----CcccceeEE
Q 046107          132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDP------NA----KNISFVTSA  201 (224)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~------~g----~~~~~~t~~  201 (224)
                      +...                                    ++|.++|+++..+..+...      +|    ..+..++.+
T Consensus       821 Ds~N------------------------------------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI  864 (1057)
T PLN02919        821 DSYN------------------------------------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL  864 (1057)
T ss_pred             ECCC------------------------------------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence            9887                                    6899999876554444321      11    124456666


Q ss_pred             EEE-CCEEEEEeCCCCeEEEeeC
Q 046107          202 LEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       202 ~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      +.+ +|+|||++..+++|.++++
T Consensus       865 avd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        865 ALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             EEeCCCCEEEEECCCCEEEEEEC
Confidence            654 7899999999999999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.59  E-value=3.4e-13  Score=109.61  Aligned_cols=154  Identities=18%  Similarity=0.267  Sum_probs=108.1

Q ss_pred             cccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEe-cCCCEEEEEeCC
Q 046107           12 FANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALS-KHGDFVVVCESW   89 (224)
Q Consensus        12 ~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~-~dg~~Lyv~~~~   89 (224)
                      ++++++.++ +|+||++|..                 .+.|+++++++++.+.+....  |+|++++ ++| .|||++..
T Consensus         1 l~Egp~~d~~~g~l~~~D~~-----------------~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~   60 (246)
T PF08450_consen    1 LGEGPVWDPRDGRLYWVDIP-----------------GGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSG   60 (246)
T ss_dssp             CEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETT
T ss_pred             CCcceEEECCCCEEEEEEcC-----------------CCEEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcC
Confidence            468899997 8999999953                 689999999877665443222  9999999 665 59999864


Q ss_pred             CCeEEEEEccCCCcccceEeecc-----CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           90 KFRCIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                      +  +..+++..+   +.+.+.+.     ....|+++++|++|++|+++......                          
T Consensus        61 ~--~~~~d~~~g---~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~--------------------------  109 (246)
T PF08450_consen   61 G--IAVVDPDTG---KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA--------------------------  109 (246)
T ss_dssp             C--EEEEETTTT---EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT--------------------------
T ss_pred             c--eEEEecCCC---cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcc--------------------------
Confidence            4  444576542   34444432     22479999999999999999876311                          


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        .....++|++++++|+.......     +..+..++.+  +..||+++...++|.++++
T Consensus       110 --~~~~~g~v~~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen  110 --SGIDPGSVYRIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             --TCGGSEEEEEEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             --ccccccceEEECCCCeEEEEecC-----cccccceEECCcchheeecccccceeEEEec
Confidence              00001789999999776555432     3345566544  5679999999999999986

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.54  E-value=2.3e-13  Score=108.92  Aligned_cols=153  Identities=17%  Similarity=0.190  Sum_probs=118.6

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...|..++|++|+||||-.                  .|.--|+||..+.++++ ......|+|||..|||. +|+++..
T Consensus       148 ~nlet~vfD~~G~lWFt~q------------------~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyasla  208 (353)
T COG4257         148 ANLETAVFDPWGNLWFTGQ------------------IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLA  208 (353)
T ss_pred             CcccceeeCCCccEEEeec------------------cccceecCcccCceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence            4457788999999999963                  24444899987777766 34678899999999997 9999999


Q ss_pred             CCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                      .+.|.++++..   +..+++...  +...-..+-.|+.|++|++++..                                
T Consensus       209 gnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg~--------------------------------  253 (353)
T COG4257         209 GNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT--------------------------------  253 (353)
T ss_pred             ccceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccCC--------------------------------
Confidence            99999999854   233444211  12245778889999999999888                                


Q ss_pred             CCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107          168 KGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       168 ~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~  222 (224)
                          +++.+|||.-+.-..+..|+-. ...-+.-++..|++|+.++.++.|.|++
T Consensus       254 ----g~l~rfdPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~agai~rfd  303 (353)
T COG4257         254 ----GSLHRFDPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEADAGAIGRFD  303 (353)
T ss_pred             ----ceeeEeCcccccceeeeCCCCC-CCcceeeeccCCcEEeeccccCceeecC
Confidence                7999999998877888887543 3344444666799999999999999986

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.48  E-value=6.9e-12  Score=120.19  Aligned_cols=160  Identities=14%  Similarity=0.209  Sum_probs=112.2

Q ss_pred             cccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--------------Cccccc
Q 046107            8 HLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--------------GLYFAN   72 (224)
Q Consensus         8 ~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--------------~~~~pn   72 (224)
                      .++.+|.++++++ +|+|||+|..                 .++|.++|.++.....+..              .+..|.
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~-----------------n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~  627 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSN-----------------HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ  627 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECC-----------------CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc
Confidence            5689999999997 5789999954                 5788899987433322222              145699


Q ss_pred             eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec---------c-------CCCCCCceEECC-CCCEEEEEecC
Q 046107           73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE---------N-------LPGGPDNINLAP-DGSFWISLIKM  135 (224)
Q Consensus        73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~---------~-------~~~~p~~i~~d~-dG~l~va~~~~  135 (224)
                      ||+++++++.|||+++.+++|.++++.++.   .+.+..         +       ....|.++++++ +|.+|+++...
T Consensus       628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        628 GLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             EEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            999999988899999999999999986432   222211         0       013689999999 68899999877


Q ss_pred             CchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCC------C-----CCcccceeEEEEE
Q 046107          136 NSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDP------N-----AKNISFVTSALEF  204 (224)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~------~-----g~~~~~~t~~~~~  204 (224)
                                                          ..|.++++....+..+...      .     ...+..++.++.+
T Consensus       705 ------------------------------------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavs  748 (1057)
T PLN02919        705 ------------------------------------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLS  748 (1057)
T ss_pred             ------------------------------------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEe
Confidence                                                5677777654433333211      0     0123345555543


Q ss_pred             --CCEEEEEeCCCCeEEEeeC
Q 046107          205 --QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 --~g~lyv~~~~~~~i~~~~~  223 (224)
                        +++||+++..+++|.++++
T Consensus       749 pdG~~LYVADs~n~~Irv~D~  769 (1057)
T PLN02919        749 PDLKELYIADSESSSIRALDL  769 (1057)
T ss_pred             CCCCEEEEEECCCCeEEEEEC
Confidence              4679999999999999985

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.44  E-value=2.1e-11  Score=104.92  Aligned_cols=189  Identities=14%  Similarity=0.237  Sum_probs=119.7

Q ss_pred             ceeeecc-ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCc-eEEEEeCCC--C---eEEEEecCcccccee
Q 046107            2 IKIHLCH-LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHG-QLLRYDPSS--K---QVSIVLEGLYFANGV   74 (224)
Q Consensus         2 ~~~~~~~-~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~--g---~~~~~~~~~~~pngi   74 (224)
                      |+.+... .+..|..|+++++|+|||+++. .|...     .......+ +|++++...  |   +.+.+.+++..|+||
T Consensus         4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~-~y~~~-----~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi   77 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGI-TYSRP-----AGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGL   77 (367)
T ss_pred             EEEEECCCccCCCceeeECCCCCEEEEeCC-cCCCC-----CCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccce
Confidence            4455543 5899999999999999999874 22211     00112234 888887531  2   356778899999999


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEE-ccCC--CcccceEeeccCC-------CCCCceEECCCCCEEEEEecCCchhhhhhc
Q 046107           75 ALSKHGDFVVVCESWKFRCIKHW-LKLG--DKRDREIFIENLP-------GGPDNINLAPDGSFWISLIKMNSSAVETVH  144 (224)
Q Consensus        75 a~~~dg~~Lyv~~~~~~~I~~~~-~~~~--~~~~~~~~~~~~~-------~~p~~i~~d~dG~l~va~~~~~~~~~~~~~  144 (224)
                      ++.++|  |||++.  .+|+++. .++.  ..++.+++++..+       ..+.++++++||+||++..........   
T Consensus        78 ~~~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~---  150 (367)
T TIGR02604        78 AVAVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT---  150 (367)
T ss_pred             eEecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec---
Confidence            999987  999974  4799885 3332  2224556654322       238899999999999998864221100   


Q ss_pred             cChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-ECCEEEEEeCCCCeEEEe
Q 046107          145 SSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-FQGNLYLASINSNFIGKL  221 (224)
Q Consensus       145 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-~~g~lyv~~~~~~~i~~~  221 (224)
                       .|.       .+.    .  ......+.|+|++|+|...+.+..  |  +.++-.++. ..|++|+++.......++
T Consensus       151 -~~~-------~~~----~--~~~~~~g~i~r~~pdg~~~e~~a~--G--~rnp~Gl~~d~~G~l~~tdn~~~~~~~i  210 (367)
T TIGR02604       151 -RPG-------TSD----E--SRQGLGGGLFRYNPDGGKLRVVAH--G--FQNPYGHSVDSWGDVFFCDNDDPPLCRV  210 (367)
T ss_pred             -cCC-------Ccc----C--cccccCceEEEEecCCCeEEEEec--C--cCCCccceECCCCCEEEEccCCCceeEE
Confidence             000       000    0  001112789999999987777753  3  244555554 479999998765544443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=99.25  E-value=9.4e-11  Score=79.22  Aligned_cols=82  Identities=27%  Similarity=0.475  Sum_probs=67.0

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhh--hhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYY--LDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~--~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      |||++.....+|+|+++  +-...|+  .+.....+.|.|..+|++  +++.+.+++.+||||+++||++.|||++...+
T Consensus         1 NDIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~   76 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAH   76 (86)
T ss_pred             CCEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence            68888877799999987  3333443  234445678999999974  67888999999999999999999999999999


Q ss_pred             eEEEEEcc
Q 046107           92 RCIKHWLK   99 (224)
Q Consensus        92 ~I~~~~~~   99 (224)
                      .|..|..+
T Consensus        77 ~I~vy~~~   84 (86)
T PF01731_consen   77 SIHVYKRH   84 (86)
T ss_pred             eEEEEEec
Confidence            99999763

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=7.3e-10  Score=92.63  Aligned_cols=166  Identities=17%  Similarity=0.260  Sum_probs=112.0

Q ss_pred             cccccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEE
Q 046107            8 HLIRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ......++.+.+++. .||++|-                 ..++++++++.+++.+.+......++++.++.+|. |+++
T Consensus        22 ~~~~~gEgP~w~~~~~~L~w~DI-----------------~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~-Lv~~   83 (307)
T COG3386          22 KGATLGEGPVWDPDRGALLWVDI-----------------LGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIAC   83 (307)
T ss_pred             cccccccCccCcCCCCEEEEEeC-----------------CCCeEEEecCCcCceEEEECCCCcccceeecCCCe-EEEE
Confidence            334556676666654 5888883                 47899999998788888877777899999998874 7777


Q ss_pred             eCCCCeEEEEEccCCCcccceEeecc----CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIEN----LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      +.   .+++++++.+.  ..+.+.+.    ..-.|++..++++|++|+++... .. .+.                    
T Consensus        84 ~~---g~~~~~~~~~~--~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-~~~--------------------  136 (307)
T COG3386          84 EH---GVRLLDPDTGG--KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-LGK--------------------  136 (307)
T ss_pred             cc---ccEEEeccCCc--eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-cCc--------------------
Confidence            64   34445543211  11333322    22479999999999999999883 00 000                    


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                         ...+..+.|+|+||+|..++.+...  -.+++--...+++.+||+++...++|.++++
T Consensus       137 ---~~~~~~G~lyr~~p~g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~  192 (307)
T COG3386         137 ---SEERPTGSLYRVDPDGGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDL  192 (307)
T ss_pred             ---cccCCcceEEEEcCCCCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence               1223347999999999888776431  1122222334566799999999999999976

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=1.1e-09  Score=93.49  Aligned_cols=161  Identities=19%  Similarity=0.247  Sum_probs=106.3

Q ss_pred             ccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeC--CCCeEEE----EecCccccceeEEecCCC
Q 046107            9 LIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDP--SSKQVSI----VLEGLYFANGVALSKHGD   81 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~~g~~~~----~~~~~~~pngia~~~dg~   81 (224)
                      .-..|+.+.++|||+ +|++|..                 ..+|+.++.  .+++++.    ......+|..++++|||+
T Consensus       142 ~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~  204 (345)
T PF10282_consen  142 EGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK  204 (345)
T ss_dssp             SSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS
T ss_pred             ccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC
Confidence            356788999999985 8888843                 345555554  4333433    235678899999999999


Q ss_pred             EEEEEeCCCCeEEEEEcc--CCCcccceEeecc---CCC--CCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHH
Q 046107           82 FVVVCESWKFRCIKHWLK--LGDKRDREIFIEN---LPG--GPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLL  153 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~~---~~~--~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~  153 (224)
                      ++||++..++.|..|+.+  .+.+...+.+...   ..+  .|.+|++++||+ ||+++...++                
T Consensus       205 ~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s----------------  268 (345)
T PF10282_consen  205 YAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS----------------  268 (345)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE----------------
T ss_pred             EEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE----------------
Confidence            999999999999999987  2222222222111   111  578899999997 8888877632                


Q ss_pred             hhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCC-CCcccceeEEE--EECCEEEEEeCCCCeEEEeeC
Q 046107          154 EEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPN-AKNISFVTSAL--EFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~-g~~~~~~t~~~--~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                        -.++.+|++ |++...-..+. |.   .+..+.  +++..||+++..++.|.+|++
T Consensus       269 ------------------I~vf~~d~~~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  269 ------------------ISVFDLDPATGTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             ------------------EEEEEECTTTTTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             ------------------EEEEEEecCCCceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence                              467888654 76644322232 32   244444  467899999999999999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.15  E-value=4.6e-09  Score=88.82  Aligned_cols=161  Identities=12%  Similarity=0.072  Sum_probs=99.6

Q ss_pred             ccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-CeEEE------EecCccccceeEEecCCCE
Q 046107           11 RFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-KQVSI------VLEGLYFANGVALSKHGDF   82 (224)
Q Consensus        11 ~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g~~~~------~~~~~~~pngia~~~dg~~   82 (224)
                      ..|+.++++++| .+|+++..                 .+.|..+|.++ +.+..      .......|++++++|||++
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~  188 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY  188 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence            457888999988 47777632                 45666666542 33321      1223567999999999999


Q ss_pred             EEEEeCCCCeEEEEEccC--CCcccceEeeccC-----CCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHh
Q 046107           83 VVVCESWKFRCIKHWLKL--GDKRDREIFIENL-----PGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLE  154 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~--~~~~~~~~~~~~~-----~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~  154 (224)
                      |||++...+.|..|+++.  +.+...+.+....     +..|.+++++++|+ +|+++...+.                 
T Consensus       189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-----------------  251 (330)
T PRK11028        189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-----------------  251 (330)
T ss_pred             EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-----------------
Confidence            999999899999999863  1221111111000     11344689999997 7887554421                 


Q ss_pred             hchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          155 EHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                       -.|+.++.++...+.+. .+.+. .+..-.+..++..||+++..++.|.++++
T Consensus       252 -----------------I~v~~i~~~~~~~~~~~~~~~~~-~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        252 -----------------ISVFSVSEDGSVLSFEGHQPTET-QPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             -----------------EEEEEEeCCCCeEEEeEEEeccc-cCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence                             45677777764333322 12232 11111223457899999998999998865

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.14  E-value=8.3e-09  Score=88.06  Aligned_cols=163  Identities=18%  Similarity=0.185  Sum_probs=101.7

Q ss_pred             ccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--------------cCccccceeE
Q 046107           11 RFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--------------EGLYFANGVA   75 (224)
Q Consensus        11 ~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--------------~~~~~pngia   75 (224)
                      ..|-.++++++|+ ||+++-.               .+.-.++.++.+ |.+....              .....|+.+.
T Consensus        87 ~~p~~i~~~~~g~~l~vany~---------------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~  150 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYG---------------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV  150 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETT---------------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEEcc---------------CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEE
Confidence            4566789999884 7777632               122234555554 5444321              1345577999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCCC--cccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHH
Q 046107           76 LSKHGDFVVVCESWKFRCIKHWLKLGD--KRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQL  152 (224)
Q Consensus        76 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~--~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~  152 (224)
                      ++|||++|||++....+|+.|+.+...  +.....+.-.....|..|++.++|+ +|+.....+.               
T Consensus       151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~---------------  215 (345)
T PF10282_consen  151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT---------------  215 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE---------------
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc---------------
Confidence            999999999999999999999997532  3222222111234899999999987 8888766521               


Q ss_pred             HhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEE--EEeC-CCCC-cccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          153 LEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIR--EFND-PNAK-NISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~--~~~~-~~g~-~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                         -.++.++ ++|++..  .+.. |.+. ....++.+..+  +..||+++..++.|.+|++
T Consensus       216 -------------------v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  216 -------------------VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             -------------------EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             -------------------EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence                               3566676 4565432  2321 2211 11234555444  6789999999999999987

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.11  E-value=1.4e-08  Score=88.73  Aligned_cols=110  Identities=16%  Similarity=0.278  Sum_probs=78.2

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-------ec-CccccceeEEecCC
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-------LE-GLYFANGVALSKHG   80 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-------~~-~~~~pngia~~~dg   80 (224)
                      .+..|.+|++.+||++|||..                 ..|+|+++++.++..+.+       .. +..++.|||++||-
T Consensus        28 GL~~Pw~maflPDG~llVtER-----------------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTER-----------------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEe-----------------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            488999999999999999972                 258999998764433222       11 45677899999873


Q ss_pred             ------CEEEEEeCC---------CCeEEEEEccC--CCcccceEeeccCCC----CCCceEECCCCCEEEEEecC
Q 046107           81 ------DFVVVCESW---------KFRCIKHWLKL--GDKRDREIFIENLPG----GPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        81 ------~~Lyv~~~~---------~~~I~~~~~~~--~~~~~~~~~~~~~~~----~p~~i~~d~dG~l~va~~~~  135 (224)
                            ++|||+.+.         ..+|.|+..+.  ..+...++++...+.    .-..|++++||.||++.+..
T Consensus        91 ~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606        91 MQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             cccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                  479998632         46899998752  233444455443332    34689999999999999886

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=1.8e-08  Score=87.12  Aligned_cols=162  Identities=14%  Similarity=0.144  Sum_probs=114.3

Q ss_pred             cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      .|.+++++++| .+|+++..               ...+.+..+|..++++.........|.+++++|+|+.+||++...
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~---------------~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAG---------------NGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             CCceEEECCCCCEEEEEecc---------------cCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCC
Confidence            78999999987 89999964               136789999988776655544455789999999999999999999


Q ss_pred             CeEEEEEccCCCcccce--EeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           91 FRCIKHWLKLGDKRDRE--IFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~--~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                      +.|..++.++.......  ... .....|.+++++++|+ +|++.....                               
T Consensus       182 ~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~-------------------------------  229 (381)
T COG3391         182 NTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSG-------------------------------  229 (381)
T ss_pred             CeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCC-------------------------------
Confidence            99999998753221100  001 2335899999999998 898887761                               


Q ss_pred             CCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          168 KGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       168 ~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                         ...+.++|.....+.....+.+...+..-...+++..+|++....+.+.+++.
T Consensus       230 ---~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~  282 (381)
T COG3391         230 ---SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG  282 (381)
T ss_pred             ---CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence               05788888764443333233332111222334667888888888888888764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.04  E-value=7.8e-09  Score=87.76  Aligned_cols=161  Identities=17%  Similarity=0.281  Sum_probs=101.5

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeE-EEEe-------cCccccceeEEecC--
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV-SIVL-------EGLYFANGVALSKH--   79 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~-~~~~-------~~~~~pngia~~~d--   79 (224)
                      |+.|..|++.|||++||++                  ..|+|++++.+ +.. ..+.       .+.....||+++|+  
T Consensus         1 L~~P~~~a~~pdG~l~v~e------------------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~   61 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAE------------------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFA   61 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEE------------------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCC
T ss_pred             CCCceEEEEeCCCcEEEEe------------------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccC
Confidence            4678899999999999997                  26899999965 444 2221       24466779999994  


Q ss_pred             -CCEEEEEeCCC--------CeEEEEEccCC--CcccceEeeccCC------CCCCceEECCCCCEEEEEecCCchhhhh
Q 046107           80 -GDFVVVCESWK--------FRCIKHWLKLG--DKRDREIFIENLP------GGPDNINLAPDGSFWISLIKMNSSAVET  142 (224)
Q Consensus        80 -g~~Lyv~~~~~--------~~I~~~~~~~~--~~~~~~~~~~~~~------~~p~~i~~d~dG~l~va~~~~~~~~~~~  142 (224)
                       ..+|||+.+..        .+|.|+..+..  .+...++++...+      .....|++++||.||++.+.....  + 
T Consensus        62 ~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~-  138 (331)
T PF07995_consen   62 SNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--D-  138 (331)
T ss_dssp             CC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--G-
T ss_pred             CCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--c-
Confidence             34799998743        58999988643  3444455543322      134669999999999999887430  0 


Q ss_pred             hccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEE-------------EEEeCCCCCcccceeEEEEE-C-CE
Q 046107          143 VHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSII-------------REFNDPNAKNISFVTSALEF-Q-GN  207 (224)
Q Consensus       143 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~-------------~~~~~~~g~~~~~~t~~~~~-~-g~  207 (224)
                      ..+                    ......++|+|++++|++.             +.+..  |  +.++-.++++ . |+
T Consensus       139 ~~~--------------------~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--G--lRN~~~~~~d~~tg~  194 (331)
T PF07995_consen  139 NAQ--------------------DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--G--LRNPFGLAFDPNTGR  194 (331)
T ss_dssp             GGC--------------------STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTE
T ss_pred             ccc--------------------ccccccceEEEecccCcCCCCCccccCCCceEEEEEe--C--CCccccEEEECCCCc
Confidence            000                    0111238999999999731             22221  2  3455566655 4 89


Q ss_pred             EEEEeCCCC
Q 046107          208 LYLASINSN  216 (224)
Q Consensus       208 lyv~~~~~~  216 (224)
                      ||+++.+.+
T Consensus       195 l~~~d~G~~  203 (331)
T PF07995_consen  195 LWAADNGPD  203 (331)
T ss_dssp             EEEEEE-SS
T ss_pred             EEEEccCCC
Confidence            999997654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.01  E-value=2e-08  Score=86.48  Aligned_cols=102  Identities=13%  Similarity=0.110  Sum_probs=73.6

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEE-eCCC-----CeEEEEecC--------cccccee
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRY-DPSS-----KQVSIVLEG--------LYFANGV   74 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~-----g~~~~~~~~--------~~~pngi   74 (224)
                      .+..|++|++.++| |||++.                   ..|+++ +.++     ++.+.+.++        ...++++
T Consensus        70 ~l~~p~Gi~~~~~G-lyV~~~-------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l  129 (367)
T TIGR02604        70 ELSMVTGLAVAVGG-VYVATP-------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSL  129 (367)
T ss_pred             CCCCccceeEecCC-EEEeCC-------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCc
Confidence            36789999999998 999962                   357777 3321     144444432        2448899


Q ss_pred             EEecCCCEEEEEeCC-------------------CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           75 ALSKHGDFVVVCESW-------------------KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        75 a~~~dg~~Lyv~~~~-------------------~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +++|||+ |||+...                   .+.|+++++++.   +.+++..+ ...|.|+++|++|++|+++...
T Consensus       130 ~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       130 AWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             eECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence            9999996 9998762                   157999999863   34565533 3479999999999999998754

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=6e-08  Score=83.90  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=108.4

Q ss_pred             cccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107           10 IRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        10 ~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ...|+++++.++|+ +|+++..                 ...+..+|..+.+......-...|.+++++++++.+||++.
T Consensus        73 ~~~p~~i~v~~~~~~vyv~~~~-----------------~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~  135 (381)
T COG3391          73 GVYPAGVAVNPAGNKVYVTTGD-----------------SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANA  135 (381)
T ss_pred             CccccceeeCCCCCeEEEecCC-----------------CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEec
Confidence            36789999998885 9999732                 56788888554444333333449999999999999999998


Q ss_pred             --CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           89 --WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        89 --~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                        .++.|.+++......... +..   ...|.+++++++|+ +|+++...                              
T Consensus       136 ~~~~~~vsvid~~t~~~~~~-~~v---G~~P~~~a~~p~g~~vyv~~~~~------------------------------  181 (381)
T COG3391         136 GNGNNTVSVIDAATNKVTAT-IPV---GNTPTGVAVDPDGNKVYVTNSDD------------------------------  181 (381)
T ss_pred             ccCCceEEEEeCCCCeEEEE-Eec---CCCcceEEECCCCCeEEEEecCC------------------------------
Confidence              579999999875332221 221   12689999999998 99999655                              


Q ss_pred             cCCCceEEEEEECCCCcEEEEEeCCCC--CcccceeEE--EEECCEEEEEeCCC--CeEEEeeC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFNDPNA--KNISFVTSA--LEFQGNLYLASINS--NFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g--~~~~~~t~~--~~~~g~lyv~~~~~--~~i~~~~~  223 (224)
                            +.|..+|.++..+.. ..+..  .....+..+  ..++.++|++...+  +.+.++++
T Consensus       182 ------~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~  238 (381)
T COG3391         182 ------NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT  238 (381)
T ss_pred             ------CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence                  688889988765553 22110  011122233  34577799999988  68888775

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.96  E-value=9.3e-08  Score=81.24  Aligned_cols=145  Identities=14%  Similarity=0.081  Sum_probs=98.6

Q ss_pred             CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCe
Q 046107           22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES---------WKFR   92 (224)
Q Consensus        22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~---------~~~~   92 (224)
                      .++|++|...             ....++|+.+|.+++++.-..+....|+|+ ++|||++|||+++         ..+.
T Consensus        13 ~~v~V~d~~~-------------~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~   78 (352)
T TIGR02658        13 RRVYVLDPGH-------------FAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDY   78 (352)
T ss_pred             CEEEEECCcc-------------cccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCE
Confidence            4799998651             112489999999877776666778899997 9999999999999         8899


Q ss_pred             EEEEEccCCCcccceEeecc-----CCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           93 CIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      |..||+...+.. .++-...     ....|..+++.+||+ +||++....                              
T Consensus        79 V~v~D~~t~~~~-~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~------------------------------  127 (352)
T TIGR02658        79 VEVIDPQTHLPI-ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS------------------------------  127 (352)
T ss_pred             EEEEECccCcEE-eEEccCCCchhhccCccceEEECCCCCEEEEecCCCC------------------------------
Confidence            999998753210 1111100     012566999999997 999987742                              


Q ss_pred             CCCceEEEEEECC-CCcEEEEEeCCCCCcccce------eEEEEECCEEEEEeCCCCe
Q 046107          167 GKGAAAKVVKVSA-NGSIIREFNDPNAKNISFV------TSALEFQGNLYLASINSNF  217 (224)
Q Consensus       167 ~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~------t~~~~~~g~lyv~~~~~~~  217 (224)
                           +.|.++|. .++.+..+.-|++..+ .+      ...|.++..+.++.-..+.
T Consensus       128 -----~~V~VvD~~~~kvv~ei~vp~~~~v-y~t~e~~~~~~~~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       128 -----PAVGVVDLEGKAFVRMMDVPDCYHI-FPTANDTFFMHCRDGSLAKVGYGTKGN  179 (352)
T ss_pred             -----CEEEEEECCCCcEEEEEeCCCCcEE-EEecCCccEEEeecCceEEEEecCCCc
Confidence                 57888885 4788887776654311 11      1235566666665544443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.94  E-value=9.8e-08  Score=80.73  Aligned_cols=137  Identities=15%  Similarity=0.163  Sum_probs=84.8

Q ss_pred             ceEEEEeCC-CCeEEEE--ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC-CCcccceEeeccCCCCCCceEECC
Q 046107           49 GQLLRYDPS-SKQVSIV--LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL-GDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        49 g~l~~~~~~-~g~~~~~--~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      +.|..++.+ +++++.+  ......|+.++++||+++||++....+.|..|++++ +.+......  ..++.|.++++++
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~   89 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDH   89 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECC
Confidence            445444432 2554433  233467899999999999999988788998888752 122111111  1345799999999


Q ss_pred             CCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEE-
Q 046107          125 DGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSAL-  202 (224)
Q Consensus       125 dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~-  202 (224)
                      +|+ +|++....+ .                                 -.++.++.+|..........+.  ..+..++ 
T Consensus        90 ~g~~l~v~~~~~~-~---------------------------------v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~  133 (330)
T PRK11028         90 QGRFLFSASYNAN-C---------------------------------VSVSPLDKDGIPVAPIQIIEGL--EGCHSANI  133 (330)
T ss_pred             CCCEEEEEEcCCC-e---------------------------------EEEEEECCCCCCCCceeeccCC--CcccEeEe
Confidence            997 666655441 0                                 3556666667543332211121  1233333 


Q ss_pred             -EECCEEEEEeCCCCeEEEeeC
Q 046107          203 -EFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       203 -~~~g~lyv~~~~~~~i~~~~~  223 (224)
                       +++..+|+++...+.|.++++
T Consensus       134 ~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028        134 DPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCCCCEEEEeeCCCCEEEEEEE
Confidence             346789999999999999876

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.89  E-value=2.3e-07  Score=77.20  Aligned_cols=149  Identities=20%  Similarity=0.207  Sum_probs=93.6

Q ss_pred             ccccccceEEec-C-----CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe---------------cC
Q 046107            9 LIRFANDVIEAS-D-----GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL---------------EG   67 (224)
Q Consensus         9 ~~~~~n~v~~~~-~-----G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~---------------~~   67 (224)
                      +-.+.|+++++. +     +.+|+||...                 +.|..+|..+++...+.               .+
T Consensus        59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~-----------------~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g  121 (287)
T PF03022_consen   59 PDSFLNDLVVDVRDGNCDDGFAYITDSGG-----------------PGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGG  121 (287)
T ss_dssp             TCGGEEEEEEECTTTTS-SEEEEEEETTT-----------------CEEEEEETTTTEEEEEETCGCTTS-SSEEEEETT
T ss_pred             cccccceEEEEccCCCCcceEEEEeCCCc-----------------CcEEEEEccCCcEEEEecCCcceeccccceeccC
Confidence            356788999986 2     5799999762                 23444444433322111               11


Q ss_pred             -----ccccceeEEec---CCCEEEEEeCCCCeEEEEEcc---CCCccc-------ceEeeccCCCCCCceEECCCCCEE
Q 046107           68 -----LYFANGVALSK---HGDFVVVCESWKFRCIKHWLK---LGDKRD-------REIFIENLPGGPDNINLAPDGSFW  129 (224)
Q Consensus        68 -----~~~pngia~~~---dg~~Lyv~~~~~~~I~~~~~~---~~~~~~-------~~~~~~~~~~~p~~i~~d~dG~l~  129 (224)
                           ..+..||+++|   ||++||+....+..++++..+   .....+       .+.+. ..++..+|+++|++|++|
T Consensus       122 ~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly  200 (287)
T PF03022_consen  122 ESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLY  200 (287)
T ss_dssp             EEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEE
T ss_pred             ceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEE
Confidence                 12256788876   889999999999999999964   221111       12221 112356999999999999


Q ss_pred             EEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-----cEEEEEeCCCCCcccceeEEEEE
Q 046107          130 ISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-----SIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       130 va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-----~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      +++...                                    ++|.+.++++     +......++.  .+.++..+..+
T Consensus       201 ~~~~~~------------------------------------~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~  242 (287)
T PF03022_consen  201 FTDVEQ------------------------------------NAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKID  242 (287)
T ss_dssp             EEECCC------------------------------------TEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-
T ss_pred             EecCCC------------------------------------CeEEEEeCCCCcCccchheeEEcCc--eeeccceeeec
Confidence            999988                                    6899999998     4445556654  36778887765


Q ss_pred             C---CEEEEEeC
Q 046107          205 Q---GNLYLASI  213 (224)
Q Consensus       205 ~---g~lyv~~~  213 (224)
                      .   |.||+.+.
T Consensus       243 ~~~~g~L~v~sn  254 (287)
T PF03022_consen  243 PEGDGYLWVLSN  254 (287)
T ss_dssp             T--TS-EEEEE-
T ss_pred             cccCceEEEEEC
Confidence            5   99999883

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.87  E-value=2.7e-07  Score=76.66  Aligned_cols=111  Identities=17%  Similarity=0.212  Sum_probs=74.1

Q ss_pred             ccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe------cCccc---cceeEEec
Q 046107            9 LIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL------EGLYF---ANGVALSK   78 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~------~~~~~---pngia~~~   78 (224)
                      +=..|.-|++.|+|. .|+...-               ..+=.+|.+++..++.+.+.      .++..   ...|.+++
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEecc---------------CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            345677889999886 5555421               12334667777657766553      23333   34789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEcc--CCCcccceEeeccCCC-CCCceEECCCCCEEEEEecCC
Q 046107           79 HGDFVVVCESWKFRCIKHWLK--LGDKRDREIFIENLPG-GPDNINLAPDGSFWISLIKMN  136 (224)
Q Consensus        79 dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~~~~~-~p~~i~~d~dG~l~va~~~~~  136 (224)
                      ||++||+++...+.|+.|.++  ++.+......  ...+ .|+++.+++.|++.++....+
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~--~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT--PTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe--ccCCcCCccceeCCCCCEEEEEccCC
Confidence            999999999999999998886  3222111111  1234 499999999999888777663

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.86  E-value=1.3e-06  Score=70.84  Aligned_cols=163  Identities=13%  Similarity=0.107  Sum_probs=113.0

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE--ecCccccceeEEecC
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV--LEGLYFANGVALSKH   79 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~--~~~~~~pngia~~~d   79 (224)
                      +++|.|.+-.+..++.+..+|.+|-+.-.               -+...|.++|+++|++...  .+.-.+..||++-.|
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d  100 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD  100 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC
Confidence            57888999999999999889999999632               2355799999998876543  455678889999854


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107           80 GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL  159 (224)
Q Consensus        80 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (224)
                        .||.-....+..++|+.+.  +.....|  ..++...|++.| +..+|++++..                        
T Consensus       101 --~l~qLTWk~~~~f~yd~~t--l~~~~~~--~y~~EGWGLt~d-g~~Li~SDGS~------------------------  149 (264)
T PF05096_consen  101 --KLYQLTWKEGTGFVYDPNT--LKKIGTF--PYPGEGWGLTSD-GKRLIMSDGSS------------------------  149 (264)
T ss_dssp             --EEEEEESSSSEEEEEETTT--TEEEEEE--E-SSS--EEEEC-SSCEEEE-SSS------------------------
T ss_pred             --EEEEEEecCCeEEEEcccc--ceEEEEE--ecCCcceEEEcC-CCEEEEECCcc------------------------
Confidence              5999999999999999964  2233333  235678999976 35799998865                        


Q ss_pred             HHhhhhcCCCceEEEEEECCC-CcEEEEEeCC-CCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          160 INQLMSTGKGAAAKVVKVSAN-GSIIREFNDP-NAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       160 ~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~-~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                   ++..+||+ -+..+.+.-. +|..+....-+-..+|.||.--+..++|.+|+-
T Consensus       150 -------------~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp  202 (264)
T PF05096_consen  150 -------------RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP  202 (264)
T ss_dssp             -------------EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred             -------------ceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence                         78899985 5665554332 455566676766679999999999999999974

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.75  E-value=3.6e-06  Score=69.10  Aligned_cols=103  Identities=15%  Similarity=0.137  Sum_probs=71.5

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      .+.++++.++|. +|++..                 ..+.|+.+|.++++..........+..++++|+++.||++....
T Consensus        32 ~~~~l~~~~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~   94 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCAS-----------------DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDD   94 (300)
T ss_pred             CCCceEECCCCCEEEEEEC-----------------CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCC
Confidence            367888988886 667652                 25678888987665544333344567899999999899998777


Q ss_pred             CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           91 FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +.|..+++....  ....+  .....|.+++++++|.+++.....
T Consensus        95 ~~l~~~d~~~~~--~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~  135 (300)
T TIGR03866        95 NLVTVIDIETRK--VLAEI--PVGVEPEGMAVSPDGKIVVNTSET  135 (300)
T ss_pred             CeEEEEECCCCe--EEeEe--eCCCCcceEEECCCCCEEEEEecC
Confidence            899999986421  11111  112357899999999987765543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.73  E-value=1.5e-07  Score=79.21  Aligned_cols=140  Identities=16%  Similarity=0.253  Sum_probs=94.2

Q ss_pred             eeccccccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-----cCccccceeEEec
Q 046107            5 HLCHLIRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-----EGLYFANGVALSK   78 (224)
Q Consensus         5 ~~~~~~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-----~~~~~pngia~~~   78 (224)
                      .+|+|+    +++++..| ++|++|..                 - -|+.+++.+++.+.+.     ....+.|++.+++
T Consensus       113 ~CGRPL----Gl~f~~~ggdL~VaDAY-----------------l-GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~  170 (376)
T KOG1520|consen  113 LCGRPL----GIRFDKKGGDLYVADAY-----------------L-GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP  170 (376)
T ss_pred             ccCCcc----eEEeccCCCeEEEEecc-----------------e-eeEEECCCCCcceeccccccCeeeeecCceeEcC
Confidence            345555    99999876 99999965                 2 3889999866655443     2467889999999


Q ss_pred             CCCEEEEEeCCC-----------------CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhh
Q 046107           79 HGDFVVVCESWK-----------------FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVE  141 (224)
Q Consensus        79 dg~~Lyv~~~~~-----------------~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~  141 (224)
                      +|. +|++|+++                 +|+.+||+..   .+.+++.+++ ..|+|+++.+|+.+.+........+..
T Consensus       171 ~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t---K~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~~~ri~r  245 (376)
T KOG1520|consen  171 EGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST---KVTKVLLDGL-YFPNGLALSPDGSFVLVAETTTARIKR  245 (376)
T ss_pred             CCe-EEEeccccccchhheEEeeecCCCccceEEecCcc---cchhhhhhcc-cccccccCCCCCCEEEEEeeccceeee
Confidence            765 99999754                 6788888754   3455666544 479999999999866665555444444


Q ss_pred             hhccChhH--HHHHhh-chhhHHhhhhcCCCceEEEEEECCCCcE
Q 046107          142 TVHSSKNR--KQLLEE-HPELINQLMSTGKGAAAKVVKVSANGSI  183 (224)
Q Consensus       142 ~~~~~p~~--~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~G~~  183 (224)
                      +....|..  .++.+. +|.+       +.   +  +|.+.+|..
T Consensus       246 ywi~g~k~gt~EvFa~~LPG~-------PD---N--IR~~~~G~f  278 (376)
T KOG1520|consen  246 YWIKGPKAGTSEVFAEGLPGY-------PD---N--IRRDSTGHF  278 (376)
T ss_pred             eEecCCccCchhhHhhcCCCC-------Cc---c--eeECCCCCE
Confidence            44444543  233333 6652       22   2  567777754

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.72  E-value=3.6e-07  Score=82.99  Aligned_cols=161  Identities=11%  Similarity=0.114  Sum_probs=112.7

Q ss_pred             eeeeccccccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCC
Q 046107            3 KIHLCHLIRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGD   81 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~   81 (224)
                      |++=.+.+.+|++||+|--+ ++|+||+-.               -.-.+-.+|.+ -+...+.+++-.|.+|++++=++
T Consensus      1060 ~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rg 1123 (1289)
T KOG1214|consen 1060 ETIVNSGLISPEGIAVDHIRRNMYWTDSVL---------------DKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRG 1123 (1289)
T ss_pred             ceeecccCCCccceeeeeccceeeeecccc---------------chhheeecCCc-eeeEEEeecccCcceEEeecccC
Confidence            56677889999999999755 799999641               11124455643 22334568999999999999777


Q ss_pred             EEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC--EEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           82 FVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS--FWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        82 ~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~--l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                      .||++|+++  -+|-+.+++|   .+.++++...-+.|+|+.+|+.-+  -||-.+..                      
T Consensus      1124 nLYwtDWnRenPkIets~mDG---~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~---------------------- 1178 (1289)
T KOG1214|consen 1124 NLYWTDWNRENPKIETSSMDG---ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTK---------------------- 1178 (1289)
T ss_pred             ceeeccccccCCcceeeccCC---ccceEEeecccCCCCCceeCcccceeeEEecCCc----------------------
Confidence            799999764  4788899988   456788765567999999999876  45554443                      


Q ss_pred             hhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          158 ELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                     ++--+.|+|.-.+++..  +  +.-+-.+..+++.+|.++|..|+|.-+++
T Consensus      1179 ---------------rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1179 ---------------RLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred             ---------------ceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeec
Confidence                           44556666654443321  1  23344455567779999999998877654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.66  E-value=1.7e-06  Score=74.47  Aligned_cols=153  Identities=15%  Similarity=0.091  Sum_probs=92.1

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      +..+.+.+||+ +|+++                  .+|.|..+|..++++.........|.|+++++||++||+++...+
T Consensus        39 h~~~~~s~Dgr~~yv~~------------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~  100 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVAN------------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPG  100 (369)
T ss_dssp             EEEEE-TT-SSEEEEEE------------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETT
T ss_pred             eeEEEecCCCCEEEEEc------------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCC
Confidence            34566778885 77775                  257899999987765555556778999999999999999999999


Q ss_pred             eEEEEEccCCCcccceEeecc-CC-----CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           92 RCIKHWLKLGDKRDREIFIEN-LP-----GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        92 ~I~~~~~~~~~~~~~~~~~~~-~~-----~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      .+..+|..+.  ...+.+... .+     ..+.++...+....|+.+....                             
T Consensus       101 ~v~v~D~~tl--e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~-----------------------------  149 (369)
T PF02239_consen  101 TVSVIDAETL--EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT-----------------------------  149 (369)
T ss_dssp             EEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT-----------------------------
T ss_pred             ceeEeccccc--cceeecccccccccccCCCceeEEecCCCCEEEEEEccC-----------------------------
Confidence            9999997642  122222111 11     1233566666677677665542                             


Q ss_pred             cCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                            ++|..+|.+ .+.+..-....+.   .+..+..+  +..++++...+|.|+++++
T Consensus       150 ------~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~  201 (369)
T PF02239_consen  150 ------GEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDT  201 (369)
T ss_dssp             ------TEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred             ------CeEEEEEeccccccceeeecccc---cccccccCcccceeeecccccceeEEEee
Confidence                  578888743 3332221112233   23344433  4568888899999999876

...

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.65  E-value=1.7e-06  Score=81.78  Aligned_cols=156  Identities=17%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             ccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe----cCccccceeEEec-CCC
Q 046107            7 CHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL----EGLYFANGVALSK-HGD   81 (224)
Q Consensus         7 ~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~----~~~~~pngia~~~-dg~   81 (224)
                      +..+=.|-.+|..+||.+|+.|.                   ..|=|+.++ |.+..+.    .....-.-||++| || 
T Consensus       361 ~~~L~aPvala~a~DGSl~VGDf-------------------NyIRRI~~d-g~v~tIl~L~~t~~sh~Yy~AvsPvdg-  419 (1899)
T KOG4659|consen  361 SISLFAPVALAYAPDGSLIVGDF-------------------NYIRRISQD-GQVSTILTLGLTDTSHSYYIAVSPVDG-  419 (1899)
T ss_pred             cceeeceeeEEEcCCCcEEEccc-------------------hheeeecCC-CceEEEEEecCCCccceeEEEecCcCc-
Confidence            44456788899999999999983                   234566666 4444332    2334445799999 76 


Q ss_pred             EEEEEeCCCCeEEEEEc-cCC-CcccceEeecc----CC----------------CCCCceEECCCCCEEEEEecCCchh
Q 046107           82 FVVVCESWKFRCIKHWL-KLG-DKRDREIFIEN----LP----------------GGPDNINLAPDGSFWISLIKMNSSA  139 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~-~~~-~~~~~~~~~~~----~~----------------~~p~~i~~d~dG~l~va~~~~~~~~  139 (224)
                      .|||++..+++|+|+.- .+. ...+.++++..    +|                .+|.||++|++|++|++++.     
T Consensus       420 tlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-----  494 (1899)
T KOG4659|consen  420 TLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-----  494 (1899)
T ss_pred             eEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-----
Confidence            59999999999999873 211 11223333311    01                26999999999999999875     


Q ss_pred             hhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCC---------C------CCcccceeEEEEE
Q 046107          140 VETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDP---------N------AKNISFVTSALEF  204 (224)
Q Consensus       140 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~---------~------g~~~~~~t~~~~~  204 (224)
                                                       .|-++|.+|-+...+...         +      ...+-++|.++.+
T Consensus       495 ---------------------------------~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~  541 (1899)
T KOG4659|consen  495 ---------------------------------RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVD  541 (1899)
T ss_pred             ---------------------------------EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeec
Confidence                                             456677766554443211         0      0123456666544


Q ss_pred             --CCEEEEEeCCCCeEEEeeC
Q 046107          205 --QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 --~g~lyv~~~~~~~i~~~~~  223 (224)
                        ++.|||=+  +|-|.+++.
T Consensus       542 Pmdnsl~Vld--~nvvlrit~  560 (1899)
T KOG4659|consen  542 PMDNSLLVLD--TNVVLRITV  560 (1899)
T ss_pred             CCCCeEEEee--cceEEEEcc
Confidence              78888866  677777653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.63  E-value=1.2e-05  Score=66.06  Aligned_cols=152  Identities=13%  Similarity=0.027  Sum_probs=91.5

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      ++++++.++|.++++...                ....++.+|..+++..........|+.+++++||++||++....+.
T Consensus       117 ~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       117 PEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             cceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCE
Confidence            566777777765554321                1123445676555443322233567889999999988888777789


Q ss_pred             EEEEEccCCCcccceEee-c--c---CCCCCCceEECCCCCE-EEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           93 CIKHWLKLGDKRDREIFI-E--N---LPGGPDNINLAPDGSF-WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~-~--~---~~~~p~~i~~d~dG~l-~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      |..|++...+.  ...+. .  .   ....|.+++++++|+. |++....                              
T Consensus       181 v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~------------------------------  228 (300)
T TIGR03866       181 VSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA------------------------------  228 (300)
T ss_pred             EEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCC------------------------------
Confidence            99999874321  11110 0  0   1124678999999985 6665444                              


Q ss_pred             cCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEE--EECCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSAL--EFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~--~~~g~lyv~~~~~~~i~~~~~  223 (224)
                            ..+..+|.+ ++.+..+..  +.   .+..+.  +++..||+++..++.|.++++
T Consensus       229 ------~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       229 ------NRVAVVDAKTYEVLDYLLV--GQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             ------CeEEEEECCCCcEEEEEEe--CC---CcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence                  456677754 666554432  21   233444  345678888777788888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=1.4e-05  Score=66.61  Aligned_cols=119  Identities=15%  Similarity=0.161  Sum_probs=78.7

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhH
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNR  149 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~  149 (224)
                      ++...++||+++|++++....+|..|+.+.+.+.......-.....|+.|++-++|. .|+...-.+.            
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st------------  214 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST------------  214 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE------------
Confidence            557789999999999999999999999985444333222112235899999999998 5666554421            


Q ss_pred             HHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEE--EE-eCCC---CCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107          150 KQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIR--EF-NDPN---AKNISFVTSALEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~--~~-~~~~---g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~  222 (224)
                                            -.|+.+++. |++..  .+ ..|+   |....+.--+..++.-||+++.+.+.|+.+.
T Consensus       215 ----------------------V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~  272 (346)
T COG2706         215 ----------------------VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS  272 (346)
T ss_pred             ----------------------EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence                                  567888875 55422  22 1232   2211111122245677999999999999887


Q ss_pred             C
Q 046107          223 L  223 (224)
Q Consensus       223 ~  223 (224)
                      +
T Consensus       273 V  273 (346)
T COG2706         273 V  273 (346)
T ss_pred             E
Confidence            5

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.44  E-value=3.4e-06  Score=76.85  Aligned_cols=111  Identities=14%  Similarity=0.093  Sum_probs=80.2

Q ss_pred             eccccccccceEEe-cCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-EecCccccceeEEecCCCEE
Q 046107            6 LCHLIRFANDVIEA-SDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFV   83 (224)
Q Consensus         6 ~~~~~~~~n~v~~~-~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~L   83 (224)
                      -.-+-.-+-+|++| .+..||+||++.                 -+|-+-...+++.+. +..++..|.|||++.-++.+
T Consensus      1020 l~~p~~IiVGidfDC~e~mvyWtDv~g-----------------~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ 1082 (1289)
T KOG1214|consen 1020 LSLPGSIIVGIDFDCRERMVYWTDVAG-----------------RSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNM 1082 (1289)
T ss_pred             EecccceeeeeecccccceEEEeecCC-----------------CccccccccCCCCceeecccCCCccceeeeecccee
Confidence            33344445567776 356799999761                 123344444445444 46789999999999988899


Q ss_pred             EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCC
Q 046107           84 VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMN  136 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~  136 (224)
                      |++|+...+|-+..++|.   ..++++...--.|.+|++|+ .|+||-++|...
T Consensus      1083 ywtDS~lD~IevA~LdG~---~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe 1133 (1289)
T KOG1214|consen 1083 YWTDSVLDKIEVALLDGS---ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE 1133 (1289)
T ss_pred             eeeccccchhheeecCCc---eeeEEEeecccCcceEEeecccCceeecccccc
Confidence            999999999999999883   34555432234799999998 589999999873

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.43  E-value=1.9e-05  Score=68.13  Aligned_cols=136  Identities=15%  Similarity=0.182  Sum_probs=77.7

Q ss_pred             CCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ..|.|..+|.++.++.... .+...+.+++++|||+++||++. .+.|.++|+...+  ....+  .....|.++++++|
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~--~v~~i--~~G~~~~~i~~s~D   88 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGK--VVATI--KVGGNPRGIAVSPD   88 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSS--EEEEE--E-SSEEEEEEE--T
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCccc--EEEEE--ecCCCcceEEEcCC
Confidence            3689999998766544333 33333567899999999999985 5799999996422  11112  12347999999999


Q ss_pred             CC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCC---CCCcccceeE
Q 046107          126 GS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDP---NAKNISFVTS  200 (224)
Q Consensus       126 G~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~---~g~~~~~~t~  200 (224)
                      |+ +|+++...                                    +.|..+|. ..++++.+...   .+..-+.++.
T Consensus        89 G~~~~v~n~~~------------------------------------~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a  132 (369)
T PF02239_consen   89 GKYVYVANYEP------------------------------------GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA  132 (369)
T ss_dssp             TTEEEEEEEET------------------------------------TEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred             CCEEEEEecCC------------------------------------CceeEeccccccceeecccccccccccCCCcee
Confidence            98 66666655                                    57788885 46777766432   1111123333


Q ss_pred             EEE-ECCEEEEEeCC-CCeEEEeeC
Q 046107          201 ALE-FQGNLYLASIN-SNFIGKLPL  223 (224)
Q Consensus       201 ~~~-~~g~lyv~~~~-~~~i~~~~~  223 (224)
                      +.. +.+..|+.+.. .+.|..++.
T Consensus       133 Iv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen  133 IVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             EEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             EEecCCCCEEEEEEccCCeEEEEEe
Confidence            332 34444544433 577766653

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.38  E-value=7e-05  Score=60.88  Aligned_cols=159  Identities=13%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeC--CCCeE-----EEEecC-----ccccceeEEe
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDP--SSKQV-----SIVLEG-----LYFANGVALS   77 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~~g~~-----~~~~~~-----~~~pngia~~   77 (224)
                      +.-+++|+...+|.+.+++.+                 .+.|+.++.  ++...     +.+.-+     -.+-.|||++
T Consensus        64 ~~D~EgI~y~g~~~~vl~~Er-----------------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D  126 (248)
T PF06977_consen   64 FGDYEGITYLGNGRYVLSEER-----------------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD  126 (248)
T ss_dssp             -SSEEEEEE-STTEEEEEETT-----------------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred             CCCceeEEEECCCEEEEEEcC-----------------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence            556888998888887777633                 345554443  32221     112111     1234599999


Q ss_pred             cCCCEEEEEe-CCCCeEEEEEc--cCCCcc--cceEeec-c-CCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhH
Q 046107           78 KHGDFVVVCE-SWKFRCIKHWL--KLGDKR--DREIFIE-N-LPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNR  149 (224)
Q Consensus        78 ~dg~~Lyv~~-~~~~~I~~~~~--~~~~~~--~~~~~~~-~-~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~  149 (224)
                      +.++.||++. .....|+.++.  .+..+.  ....+.+ . ...-|.++++++. |++|+-....              
T Consensus       127 ~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es--------------  192 (248)
T PF06977_consen  127 PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES--------------  192 (248)
T ss_dssp             TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT--------------
T ss_pred             CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC--------------
Confidence            9888888876 44456777765  111110  0000110 0 1135889999986 7799876665              


Q ss_pred             HHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCC-----CcccceeEEEEE-CCEEEEEeCCCCeEEEee
Q 046107          150 KQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNA-----KNISFVTSALEF-QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g-----~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~  222 (224)
                                            .+++++|.+|+++..+....|     +.++-+=+++.+ +|+||+.+= -|..++|.
T Consensus       193 ----------------------~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~  248 (248)
T PF06977_consen  193 ----------------------RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE  248 (248)
T ss_dssp             ----------------------TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred             ----------------------CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence                                  589999999999998877654     233445566644 799999995 57777763

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.36  E-value=0.0001  Score=62.91  Aligned_cols=81  Identities=15%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             ccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--------CccccceeEEecCCC
Q 046107           11 RFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--------GLYFANGVALSKHGD   81 (224)
Q Consensus        11 ~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--------~~~~pngia~~~dg~   81 (224)
                      ..|+++ +.+|| .+|++.+.  |.+.      ..+.....|-.+|.++.+...-..        ....|+.++++|||+
T Consensus        47 ~~P~~~-~spDg~~lyva~~~--~~R~------~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk  117 (352)
T TIGR02658        47 FLPNPV-VASDGSFFAHASTV--YSRI------ARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK  117 (352)
T ss_pred             CCCcee-ECCCCCEEEEEecc--cccc------ccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC
Confidence            367776 88887 69999874  2111      123446789999988765543222        245677999999999


Q ss_pred             EEEEEeCC-CCeEEEEEccC
Q 046107           82 FVVVCESW-KFRCIKHWLKL  100 (224)
Q Consensus        82 ~Lyv~~~~-~~~I~~~~~~~  100 (224)
                      +|||++.. .+.|.++|+..
T Consensus       118 ~l~V~n~~p~~~V~VvD~~~  137 (352)
T TIGR02658       118 TLLFYQFSPSPAVGVVDLEG  137 (352)
T ss_pred             EEEEecCCCCCEEEEEECCC
Confidence            99999954 89999999864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.30  E-value=2.7e-05  Score=74.05  Aligned_cols=114  Identities=12%  Similarity=0.116  Sum_probs=70.5

Q ss_pred             eccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC----------eEEEEecCccccceeE
Q 046107            6 LCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK----------QVSIVLEGLYFANGVA   75 (224)
Q Consensus         6 ~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g----------~~~~~~~~~~~pngia   75 (224)
                      .+..+.+|.+|+++++|.+||+|...-.          .-..+|.|--+-..+.          ..+...-.+.+|..+|
T Consensus       470 ~dA~L~~PkGIa~dk~g~lYfaD~t~IR----------~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~La  539 (1899)
T KOG4659|consen  470 QDAQLIFPKGIAFDKMGNLYFADGTRIR----------VIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLA  539 (1899)
T ss_pred             ccceeccCCceeEccCCcEEEecccEEE----------EeccCceEEEeccCCCCccCccccccccchhheeeeccccee
Confidence            4567899999999999999999965110          0011222211111100          0011112468899999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-----C---------------CCCCCceEECCCCCEEEEEecC
Q 046107           76 LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-----L---------------PGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        76 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-----~---------------~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ++|-.+.|||-|.  +-|++++.+..    +.+....     .               --.+..|++..+|.+||+....
T Consensus       540 V~Pmdnsl~Vld~--nvvlrit~~~r----V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~  613 (1899)
T KOG4659|consen  540 VDPMDNSLLVLDT--NVVLRITVVHR----VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG  613 (1899)
T ss_pred             ecCCCCeEEEeec--ceEEEEccCcc----EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc
Confidence            9995566999985  57777776531    1111100     0               0157999999999999999887

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.18  E-value=3.2e-06  Score=44.73  Aligned_cols=28  Identities=25%  Similarity=0.473  Sum_probs=24.9

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEE
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKH   96 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~   96 (224)
                      +..|+||+++++|+ |||+|+..++|.+|
T Consensus         1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            35799999998885 99999999999876

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.17  E-value=9.5e-05  Score=62.85  Aligned_cols=85  Identities=19%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-------------eEEEEecCccccceeEE
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-------------QVSIVLEGLYFANGVAL   76 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-------------~~~~~~~~~~~pngia~   76 (224)
                      ...-..|++++||.||++.-...  ......+  .....|.|+|+++++.             ..+.++.++..|.+++|
T Consensus       113 ~H~g~~l~fgpDG~LYvs~G~~~--~~~~~~~--~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~  188 (331)
T PF07995_consen  113 NHNGGGLAFGPDGKLYVSVGDGG--NDDNAQD--PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAF  188 (331)
T ss_dssp             SS-EEEEEE-TTSEEEEEEB-TT--TGGGGCS--TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEE
T ss_pred             CCCCccccCCCCCcEEEEeCCCC--Ccccccc--cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEE
Confidence            44556799999999999964411  1001111  1245789999998732             24567889999999999


Q ss_pred             ecCCCEEEEEeCCC---CeEEEEEc
Q 046107           77 SKHGDFVVVCESWK---FRCIKHWL   98 (224)
Q Consensus        77 ~~dg~~Lyv~~~~~---~~I~~~~~   98 (224)
                      +|....||+++...   .+|.++..
T Consensus       189 d~~tg~l~~~d~G~~~~dein~i~~  213 (331)
T PF07995_consen  189 DPNTGRLWAADNGPDGWDEINRIEP  213 (331)
T ss_dssp             ETTTTEEEEEEE-SSSSEEEEEE-T
T ss_pred             ECCCCcEEEEccCCCCCcEEEEecc
Confidence            99833599999543   45666653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=0.00038  Score=61.63  Aligned_cols=78  Identities=10%  Similarity=-0.048  Sum_probs=49.4

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||.+|..+++.+.+..........+|+|||+.|+++...  ...|+.++++++.   .+.+.. ........++.+|
T Consensus       241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~-~~~~~~~p~wSpD  316 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITR-HRAIDTEPSWHPD  316 (448)
T ss_pred             CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEECcc-CCCCccceEECCC
Confidence            457999998777665554322233468999999988776433  3469999987532   222221 1234456788899


Q ss_pred             CCEE
Q 046107          126 GSFW  129 (224)
Q Consensus       126 G~l~  129 (224)
                      |+..
T Consensus       317 G~~I  320 (448)
T PRK04792        317 GKSL  320 (448)
T ss_pred             CCEE
Confidence            8743

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.00043  Score=60.96  Aligned_cols=76  Identities=20%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||.++..+++.+.+..........+|+|||+.|+++...  ...|+.++++++.   .+.+. ...+.....++.+|
T Consensus       225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt-~~~~~~~~~~~spD  300 (435)
T PRK05137        225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TTRLT-DSPAIDTSPSYSPD  300 (435)
T ss_pred             CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eEEcc-CCCCccCceeEcCC
Confidence            467999998877766554333333478999999988766543  3569999987532   22232 12233455788888


Q ss_pred             CC
Q 046107          126 GS  127 (224)
Q Consensus       126 G~  127 (224)
                      |+
T Consensus       301 G~  302 (435)
T PRK05137        301 GS  302 (435)
T ss_pred             CC
Confidence            87

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.12  E-value=0.00019  Score=58.49  Aligned_cols=138  Identities=9%  Similarity=0.098  Sum_probs=81.5

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCC-cccceEeeccC-CCCCCceEECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGD-KRDREIFIENL-PGGPDNINLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~-~~~p~~i~~d~  124 (224)
                      ..+..+.+|+++-+...-.+-....+||+  .||+.||++|. +.+|+.+++++-+ .+..+|-..+. -...+-+.+- 
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-  183 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-  183 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred             cCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence            46788899987433222222334566888  46777999995 6899999987521 12222221111 1233445553 


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeC--------CCCCc-
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFND--------PNAKN-  194 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~--------~~g~~-  194 (224)
                      +|.+|.-.+..                                    ..|++|||+ |+++..+..        ..... 
T Consensus       184 ~G~IyANVW~t------------------------------------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~  227 (264)
T PF05096_consen  184 NGKIYANVWQT------------------------------------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ  227 (264)
T ss_dssp             TTEEEEEETTS------------------------------------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred             cCEEEEEeCCC------------------------------------CeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence            79999998887                                    689999986 999887732        01110 


Q ss_pred             --ccceeEEEEE--CCEEEEEeCCCCeEEEeeCC
Q 046107          195 --ISFVTSALEF--QGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       195 --~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~~  224 (224)
                        ..-...++.+  .+++|||.-.-+++.+++|+
T Consensus       228 ~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  228 PDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             -TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             ccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence              1224455643  69999999999999998863

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.09  E-value=0.00092  Score=58.86  Aligned_cols=78  Identities=14%  Similarity=0.009  Sum_probs=49.5

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...|+.++.++|+.+.+.........++|+|||+.|+++...  ...|+.++++++.   .+.+.. ........++.+|
T Consensus       222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~-~~~~~~~~~wSPD  297 (429)
T PRK03629        222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTD-GRSNNTEPTWFPD  297 (429)
T ss_pred             CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccC-CCCCcCceEECCC
Confidence            446788887767666554332333468999999999876533  3469999987532   233322 2234467788999


Q ss_pred             CCEE
Q 046107          126 GSFW  129 (224)
Q Consensus       126 G~l~  129 (224)
                      |+..
T Consensus       298 G~~I  301 (429)
T PRK03629        298 SQNL  301 (429)
T ss_pred             CCEE
Confidence            9833

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.07  E-value=6.2e-05  Score=62.39  Aligned_cols=108  Identities=19%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      ..|++|+....--|||--++.=..++|    .+....|-+. +|..++  +.+.+++.+|.+..|.. |+ ||++|+.++
T Consensus       153 HLNGlA~~~g~p~yVTa~~~sD~~~gW----R~~~~~gG~v-idv~s~--evl~~GLsmPhSPRWhd-gr-LwvldsgtG  223 (335)
T TIGR03032       153 HLNGMALDDGEPRYVTALSQSDVADGW----REGRRDGGCV-IDIPSG--EVVASGLSMPHSPRWYQ-GK-LWLLNSGRG  223 (335)
T ss_pred             eecceeeeCCeEEEEEEeeccCCcccc----cccccCCeEE-EEeCCC--CEEEcCccCCcCCcEeC-Ce-EEEEECCCC
Confidence            468999864335788864421111222    2222334333 454444  55789999999999984 54 999999999


Q ss_pred             eEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107           92 RCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        92 ~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~  134 (224)
                      +|.+++++.   |..++.. ..++.|.|+++.  |++.+....
T Consensus       224 ev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       224 ELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             EEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEec
Confidence            999999873   2344444 478899999998  776554443

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.06  E-value=0.0014  Score=52.05  Aligned_cols=160  Identities=18%  Similarity=0.137  Sum_probs=91.9

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccc-cceeEEecCC
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF-ANGVALSKHG   80 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~-pngia~~~dg   80 (224)
                      ++++.+.. ...+.+.+.++|++.++-.                 .+|.+..++.++++.......... ...+.+.+++
T Consensus         2 ~~~~~~h~-~~i~~~~~~~~~~~l~~~~-----------------~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~   63 (289)
T cd00200           2 RRTLKGHT-GGVTCVAFSPDGKLLATGS-----------------GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG   63 (289)
T ss_pred             chHhcccC-CCEEEEEEcCCCCEEEEee-----------------cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC
Confidence            34444332 4567888988887666532                 256676666654433333333333 3589999998


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           81 DFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        81 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      +.|+++. ..+.|..+++....  ....+. ........+.+.++++++++....                         
T Consensus        64 ~~l~~~~-~~~~i~i~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-------------------------  114 (289)
T cd00200          64 TYLASGS-SDKTIRLWDLETGE--CVRTLT-GHTSYVSSVAFSPDGRILSSSSRD-------------------------  114 (289)
T ss_pred             CEEEEEc-CCCeEEEEEcCccc--ceEEEe-ccCCcEEEEEEcCCCCEEEEecCC-------------------------
Confidence            7555554 57899999986421  122222 122356788898888887776634                         


Q ss_pred             HhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEEC-CEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQ-GNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~-g~lyv~~~~~~~i~~~~~  223 (224)
                                 +.|..++.. ++....+....+    .++.+.... +.++++....+.|.++++
T Consensus       115 -----------~~i~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~~~i~i~d~  164 (289)
T cd00200         115 -----------KTIKVWDVETGKCLTTLRGHTD----WVNSVAFSPDGTFVASSSQDGTIKLWDL  164 (289)
T ss_pred             -----------CeEEEEECCCcEEEEEeccCCC----cEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence                       456666654 565555542221    344444433 444444444566666654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=0.0013  Score=57.78  Aligned_cols=76  Identities=14%  Similarity=0.021  Sum_probs=48.0

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||.+|.++++.+.+..........+|+|||+.|+++...  ...|+.++.+++.   .+.+.. ..+......+.+|
T Consensus       219 ~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~-~~~~~~~~~wSpD  294 (427)
T PRK02889        219 KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQ-SSGIDTEPFFSPD  294 (427)
T ss_pred             CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCC-CCCCCcCeEEcCC
Confidence            356899998777666554333334478999999988775433  3468888876532   222221 1223345778999


Q ss_pred             CC
Q 046107          126 GS  127 (224)
Q Consensus       126 G~  127 (224)
                      |+
T Consensus       295 G~  296 (427)
T PRK02889        295 GR  296 (427)
T ss_pred             CC
Confidence            97

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.0011  Score=58.40  Aligned_cols=79  Identities=10%  Similarity=0.006  Sum_probs=50.8

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||.+|.++++.+.+..........+++|||++|+++...  ...|++++++++.   .+.+.. ..+.-...++.+|
T Consensus       269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~-~~~~~~~~~~Spd  344 (435)
T PRK05137        269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRISF-GGGRYSTPVWSPR  344 (435)
T ss_pred             CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEeec-CCCcccCeEECCC
Confidence            456899998777776665444445578999999988666532  3579999987632   222221 1223345778899


Q ss_pred             CCEEE
Q 046107          126 GSFWI  130 (224)
Q Consensus       126 G~l~v  130 (224)
                      |+..+
T Consensus       345 G~~ia  349 (435)
T PRK05137        345 GDLIA  349 (435)
T ss_pred             CCEEE
Confidence            87443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.99  E-value=0.0017  Score=56.92  Aligned_cols=80  Identities=11%  Similarity=0.002  Sum_probs=50.0

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||.++.++++.+.+..........+|+|||+.|+++...  ...|+.++++++.   .+.+. ...+......+.+|
T Consensus       222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt-~~~~~~~~~~~spD  297 (430)
T PRK00178        222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVT-NHPAIDTEPFWGKD  297 (430)
T ss_pred             CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEcc-cCCCCcCCeEECCC
Confidence            457899998877766554322233468999999988766533  3479999987632   22222 12223445678888


Q ss_pred             CC-EEEE
Q 046107          126 GS-FWIS  131 (224)
Q Consensus       126 G~-l~va  131 (224)
                      |+ ++++
T Consensus       298 g~~i~f~  304 (430)
T PRK00178        298 GRTLYFT  304 (430)
T ss_pred             CCEEEEE
Confidence            87 4444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.0017  Score=57.51  Aligned_cols=79  Identities=13%  Similarity=0.073  Sum_probs=50.6

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||.+|.++++.+.+..........+|+|||++|+++..  ....|++++++++.   .+.+. .........++.+|
T Consensus       285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt-~~g~~~~~~~~SpD  360 (448)
T PRK04792        285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLT-FEGEQNLGGSITPD  360 (448)
T ss_pred             CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEe-cCCCCCcCeeECCC
Confidence            34699999887777766544445567899999998877653  34579988887532   22221 11122345688999


Q ss_pred             CCEEE
Q 046107          126 GSFWI  130 (224)
Q Consensus       126 G~l~v  130 (224)
                      |+..+
T Consensus       361 G~~l~  365 (448)
T PRK04792        361 GRSMI  365 (448)
T ss_pred             CCEEE
Confidence            97433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.0014  Score=57.64  Aligned_cols=79  Identities=15%  Similarity=0.016  Sum_probs=49.1

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...|++++.++++.+.+.........++|+|||+.|+++...  ...|+.++++++.   .+.+.. ..+.....++.+|
T Consensus       227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~~lt~-~~~~~~~~~~spD  302 (433)
T PRK04922        227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LTRLTN-HFGIDTEPTWAPD  302 (433)
T ss_pred             CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eEECcc-CCCCccceEECCC
Confidence            456888898767665554322223368999999988766433  3479999987532   222221 1223356788999


Q ss_pred             CCEEE
Q 046107          126 GSFWI  130 (224)
Q Consensus       126 G~l~v  130 (224)
                      |+..+
T Consensus       303 G~~l~  307 (433)
T PRK04922        303 GKSIY  307 (433)
T ss_pred             CCEEE
Confidence            97433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.94  E-value=0.0014  Score=52.12  Aligned_cols=130  Identities=18%  Similarity=0.149  Sum_probs=78.7

Q ss_pred             CceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .|.|..+|..+++....... ......++++++++.|+++.. .+.|..|+.....  ....+. ........+++++++
T Consensus       156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~  231 (289)
T cd00200         156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGK--CLGTLR-GHENGVNSVAFSPDG  231 (289)
T ss_pred             CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCc--eecchh-hcCCceEEEEEcCCC
Confidence            56777777654433322222 335679999999987777765 7889999986421  111111 122356889999998


Q ss_pred             CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE-
Q 046107          127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF-  204 (224)
Q Consensus       127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~-  204 (224)
                      .++++....                                    +.|..++.+ ++....+.....    .++.+..+ 
T Consensus       232 ~~~~~~~~~------------------------------------~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~  271 (289)
T cd00200         232 YLLASGSED------------------------------------GTIRVWDLRTGECVQTLSGHTN----SVTSLAWSP  271 (289)
T ss_pred             cEEEEEcCC------------------------------------CcEEEEEcCCceeEEEccccCC----cEEEEEECC
Confidence            888776634                                    456666654 666666653322    35555554 


Q ss_pred             CCEEEEEeCCCCeEEEe
Q 046107          205 QGNLYLASINSNFIGKL  221 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~  221 (224)
                      +++++++......|..+
T Consensus       272 ~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         272 DGKRLASGSADGTIRIW  288 (289)
T ss_pred             CCCEEEEecCCCeEEec
Confidence            34555555555666554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.93  E-value=0.0021  Score=56.44  Aligned_cols=81  Identities=12%  Similarity=0.019  Sum_probs=50.6

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||.+|..+|+.+.+...........|+|||+.|+++..  ....|+.++++++.   .+.+.. .++.-....+.+|
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~-~~~~d~~p~~SPD  287 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITN-YPGIDVNGNFVED  287 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEccc-CCCccCccEECCC
Confidence            45799999988887777642222234689999998877654  34689999987632   223321 1222223468888


Q ss_pred             CC-EEEEE
Q 046107          126 GS-FWISL  132 (224)
Q Consensus       126 G~-l~va~  132 (224)
                      |+ +++..
T Consensus       288 G~~I~F~S  295 (419)
T PRK04043        288 DKRIVFVS  295 (419)
T ss_pred             CCEEEEEE
Confidence            86 55543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.92  E-value=0.0026  Score=55.98  Aligned_cols=79  Identities=14%  Similarity=0.083  Sum_probs=51.3

Q ss_pred             ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-C-CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE-S-WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~-~-~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      ..||.+|.++++.+.+..........+|+|||+.|+++. . ...+|++++++++.   .+.+. .........++.+||
T Consensus       267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt-~~~~~~~~~~~SpDG  342 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRIT-WEGSQNQDADVSSDG  342 (429)
T ss_pred             cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEee-cCCCCccCEEECCCC
Confidence            369999988777776655544556889999999885544 3 23478988887632   22222 122234567888999


Q ss_pred             CEEEE
Q 046107          127 SFWIS  131 (224)
Q Consensus       127 ~l~va  131 (224)
                      +..+.
T Consensus       343 ~~Ia~  347 (429)
T PRK03629        343 KFMVM  347 (429)
T ss_pred             CEEEE
Confidence            75443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.92  E-value=0.00085  Score=55.90  Aligned_cols=84  Identities=17%  Similarity=0.065  Sum_probs=53.8

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE---e----cCccccceeEEecC-C---
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV---L----EGLYFANGVALSKH-G---   80 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~---~----~~~~~pngia~~~d-g---   80 (224)
                      +..++.+|++|+|||-|+... ...   ... ......+|+.+|..++++...   .    ....+.+.++++.. +   
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~-~~~---~~~-~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~   76 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRP-NGL---QPP-KQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCD   76 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCH-SSS---STT-GHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-
T ss_pred             cccEEEEcCCCCEEEEeCCCc-CCC---CCC-CCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCc
Confidence            346889999999999997621 000   000 013346899999987765322   1    23456678899872 2   


Q ss_pred             -CEEEEEeCCCCeEEEEEccC
Q 046107           81 -DFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        81 -~~Lyv~~~~~~~I~~~~~~~  100 (224)
                       .++|++|.....|.+|++..
T Consensus        77 ~~~aYItD~~~~glIV~dl~~   97 (287)
T PF03022_consen   77 DGFAYITDSGGPGLIVYDLAT   97 (287)
T ss_dssp             SEEEEEEETTTCEEEEEETTT
T ss_pred             ceEEEEeCCCcCcEEEEEccC
Confidence             58999999999999999874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.92  E-value=0.0019  Score=54.82  Aligned_cols=123  Identities=14%  Similarity=0.205  Sum_probs=72.5

Q ss_pred             ccceeEEecCCCEEEEEeCCC------CeEEEEEccCCCcccc---eEee------cc--CCCCCCceEECCCCC-EEEE
Q 046107           70 FANGVALSKHGDFVVVCESWK------FRCIKHWLKLGDKRDR---EIFI------EN--LPGGPDNINLAPDGS-FWIS  131 (224)
Q Consensus        70 ~pngia~~~dg~~Lyv~~~~~------~~I~~~~~~~~~~~~~---~~~~------~~--~~~~p~~i~~d~dG~-l~va  131 (224)
                      -+.||++.++|. +||++-..      .+|++|+.+|......   ..+.      ..  .-....+|++.+||+ +|++
T Consensus        86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            456999977876 99999888      9999999886432221   1110      00  113578999999999 8998


Q ss_pred             EecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC--CcEEEEEeCCCCC-----cccceeEEE-E
Q 046107          132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--GSIIREFNDPNAK-----NISFVTSAL-E  203 (224)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G~~~~~~~~~~g~-----~~~~~t~~~-~  203 (224)
                      ....-..  +     +              +..........+++++|+.  |+....+..+-..     .-..++.++ .
T Consensus       165 ~E~~l~~--d-----~--------------~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al  223 (326)
T PF13449_consen  165 MESPLKQ--D-----G--------------PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL  223 (326)
T ss_pred             ECccccC--C-----C--------------cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE
Confidence            8765100  0     0              0000001112688999976  5555544332111     123556554 5


Q ss_pred             ECCEEEEEeCC
Q 046107          204 FQGNLYLASIN  214 (224)
Q Consensus       204 ~~g~lyv~~~~  214 (224)
                      .+++++|=+..
T Consensus       224 ~d~~lLvLER~  234 (326)
T PF13449_consen  224 PDGRLLVLERD  234 (326)
T ss_pred             CCCcEEEEEcc
Confidence            67888887766

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0019  Score=56.82  Aligned_cols=76  Identities=18%  Similarity=0.090  Sum_probs=46.5

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC--eEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF--RCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...|+.+|..+++.+.+.........++|+|||+.|+++....+  .|+.++++++.   .+.+. ...+.....++.+|
T Consensus       227 ~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt-~~~~~~~~~~wSpD  302 (429)
T PRK01742        227 KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLT-SGAGNNTEPSWSPD  302 (429)
T ss_pred             CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeec-cCCCCcCCEEECCC
Confidence            34688888776665554332223346899999998887654333  57888876532   22222 12233456788888


Q ss_pred             CC
Q 046107          126 GS  127 (224)
Q Consensus       126 G~  127 (224)
                      |+
T Consensus       303 G~  304 (429)
T PRK01742        303 GQ  304 (429)
T ss_pred             CC
Confidence            87

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.87  E-value=0.00013  Score=49.60  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=52.9

Q ss_pred             CceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCccc
Q 046107          118 DNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNIS  196 (224)
Q Consensus       118 ~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~  196 (224)
                      ++++++++ |.+|+++...+....+      +...++..-|.             |+++++||..+.+.++.+  +  +.
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~------~~~~~le~~~~-------------GRll~ydp~t~~~~vl~~--~--L~   57 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRD------WVYDLLEGRPT-------------GRLLRYDPSTKETTVLLD--G--LY   57 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTG------HHHHHHHT----------------EEEEEEETTTTEEEEEEE--E--ES
T ss_pred             CceeEecCCCEEEEEeCccccCccc------eeeeeecCCCC-------------cCEEEEECCCCeEEEehh--C--CC
Confidence            57899998 9999999987432211      12233333332             999999999887777644  2  34


Q ss_pred             ceeEEEE--ECCEEEEEeCCCCeEEEeeC
Q 046107          197 FVTSALE--FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       197 ~~t~~~~--~~g~lyv~~~~~~~i~~~~~  223 (224)
                      .+..++.  ++.-|+|++....||.|+-|
T Consensus        58 fpNGVals~d~~~vlv~Et~~~Ri~rywl   86 (89)
T PF03088_consen   58 FPNGVALSPDESFVLVAETGRYRILRYWL   86 (89)
T ss_dssp             SEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred             ccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence            5666654  35679999999999999865

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.86  E-value=0.0036  Score=54.44  Aligned_cols=77  Identities=18%  Similarity=0.035  Sum_probs=47.4

Q ss_pred             ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      ..|+.++.++++.+.+.........++|+|||+.|+++...  ...|+.+++.++.   .+.+.. ..+.....++.+||
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~-~~~~~~~~~~s~dg  289 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTN-GPGIDTEPSWSPDG  289 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EEECCC-CCCCCCCEEECCCC
Confidence            56888888766655554333334568999999988876543  3469999887532   222221 11222355778888


Q ss_pred             CEE
Q 046107          127 SFW  129 (224)
Q Consensus       127 ~l~  129 (224)
                      +..
T Consensus       290 ~~l  292 (417)
T TIGR02800       290 KSI  292 (417)
T ss_pred             CEE
Confidence            743

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.84  E-value=0.0016  Score=54.91  Aligned_cols=100  Identities=18%  Similarity=0.183  Sum_probs=61.1

Q ss_pred             CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC---------CCe
Q 046107           22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW---------KFR   92 (224)
Q Consensus        22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~---------~~~   92 (224)
                      .++||.|..  |           ....++++.+|.+++++.=..+....++ ++++|||+++|++++.         +.-
T Consensus         3 ~rvyV~D~~--~-----------~~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv   68 (342)
T PF06433_consen    3 HRVYVQDPV--F-----------FHMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV   68 (342)
T ss_dssp             TEEEEEE-G--G-----------GGSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCc--c-----------ccccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence            478999864  1           1124799999998787654444455555 7789999999999853         124


Q ss_pred             EEEEEccCCCcccceEeecc-----CCCCCCceEECCCCC-EEEEEecCC
Q 046107           93 CIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGS-FWISLIKMN  136 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~-l~va~~~~~  136 (224)
                      |..||.++... ..++.+..     ...++..+++..||+ +||.+..+.
T Consensus        69 v~~~D~~TL~~-~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa  117 (342)
T PF06433_consen   69 VEIWDTQTLSP-TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA  117 (342)
T ss_dssp             EEEEETTTTEE-EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred             EEEEecCcCcc-cceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence            66677654211 11222211     112678889988887 888888763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.83  E-value=0.0011  Score=60.07  Aligned_cols=149  Identities=14%  Similarity=0.162  Sum_probs=80.1

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC------------------------------------
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK------------------------------------   90 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~------------------------------------   90 (224)
                      -.+.+-.+|.++.++.....-...|.++++++||+++|++..++                                    
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~  292 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT  292 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence            45677788877544432222334888999999999999996332                                    


Q ss_pred             ---CeEEEEEccCCCcccceEeec-cCCCCCCceEECCCCCEEEEEecCCc--hhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           91 ---FRCIKHWLKLGDKRDREIFIE-NLPGGPDNINLAPDGSFWISLIKMNS--SAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        91 ---~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                         ++|..+|.....-...++... ..+..|.|++++|||+..++...-++  +++++-.    +.+.++          
T Consensus       293 V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k----~k~~~~----------  358 (635)
T PRK02888        293 IGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK----LDDLFD----------  358 (635)
T ss_pred             ECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh----hhhhhh----------
Confidence               233333332100000111111 13458999999999985444443321  2222110    000000          


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                             +   +++++..+......  |.  .......+.+|+.|.+-+-.+.|.+.++
T Consensus       359 -------~---~~~~~~~vvaevev--Gl--GPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        359 -------G---KIKPRDAVVAEPEL--GL--GPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             -------c---cCCccceEEEeecc--CC--CcceEEECCCCCEEEeEeecceeEEEeh
Confidence                   1   13444444554433  32  2334444456789999999999988765

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.0033  Score=54.39  Aligned_cols=171  Identities=15%  Similarity=0.129  Sum_probs=97.6

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEe--------CCCCeEEEEecCccccceeEEecCCC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYD--------PSSKQVSIVLEGLYFANGVALSKHGD   81 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~--------~~~g~~~~~~~~~~~pngia~~~dg~   81 (224)
                      ..+-..|+++|||.||++.-+.. ......   -.....|.+++++        +.+...++...++..|.|++|+|..+
T Consensus       176 ~H~g~~l~f~pDG~Lyvs~G~~~-~~~~aq---~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg  251 (399)
T COG2133         176 HHFGGRLVFGPDGKLYVTTGSNG-DPALAQ---DNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTG  251 (399)
T ss_pred             CcCcccEEECCCCcEEEEeCCCC-Cccccc---CccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCC
Confidence            56677899999999999965420 000000   0112344455544        33334456677899999999999845


Q ss_pred             EEEEEeCCCCeE------EEEEccCCCcccceEe------------------ecc------CCCCCCceEECCC------
Q 046107           82 FVVVCESWKFRC------IKHWLKLGDKRDREIF------------------IEN------LPGGPDNINLAPD------  125 (224)
Q Consensus        82 ~Lyv~~~~~~~I------~~~~~~~~~~~~~~~~------------------~~~------~~~~p~~i~~d~d------  125 (224)
                      .||+++.....+      -++.. |+..+-+-..                  ...      ..-.|-||++-..      
T Consensus       252 ~Lw~~e~g~d~~~~~Deln~i~~-G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~  330 (399)
T COG2133         252 ALWTTEHGPDALRGPDELNSIRP-GKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAY  330 (399)
T ss_pred             cEEEEecCCCcccCccccccccc-CCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccc
Confidence            699999765332      11110 1111110000                  000      0013577777632      


Q ss_pred             -CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCc---EEEEEeCCCCCcccceeEE
Q 046107          126 -GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGS---IIREFNDPNAKNISFVTSA  201 (224)
Q Consensus       126 -G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~---~~~~~~~~~g~~~~~~t~~  201 (224)
                       |.++|+.+..                                    -.+.+.+++|+   ....+-..+..  ..+-.+
T Consensus       331 r~~lfV~~hgs------------------------------------w~~~~~~~~g~~~~~~~~fl~~d~~--gR~~dV  372 (399)
T COG2133         331 RGDLFVGAHGS------------------------------------WPVLRLRPDGNYKVVLTGFLSGDLG--GRPRDV  372 (399)
T ss_pred             cCcEEEEeecc------------------------------------eeEEEeccCCCcceEEEEEEecCCC--Ccccce
Confidence             5778877776                                    35778999987   33333221111  234443


Q ss_pred             -EEECCEEEEEeCCCC-eEEEeeC
Q 046107          202 -LEFQGNLYLASINSN-FIGKLPL  223 (224)
Q Consensus       202 -~~~~g~lyv~~~~~~-~i~~~~~  223 (224)
                       +..+|.||+++-.++ +|.|+..
T Consensus       373 ~v~~DGallv~~D~~~g~i~Rv~~  396 (399)
T COG2133         373 AVAPDGALLVLTDQGDGRILRVSY  396 (399)
T ss_pred             EECCCCeEEEeecCCCCeEEEecC
Confidence             456899999998844 9999863

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.73  E-value=0.0039  Score=56.98  Aligned_cols=152  Identities=14%  Similarity=0.126  Sum_probs=100.5

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ....+.++..|||.+.+|-                 .-+|.|-.||...|.+-...+ .-..-.++.|+..|+ ..++.+
T Consensus       350 ~~~i~~l~YSpDgq~iaTG-----------------~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssS  411 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATG-----------------AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSS  411 (893)
T ss_pred             ccceeeEEECCCCcEEEec-----------------cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEee
Confidence            4556677778888777773                 236777778876666654433 345567999999997 778888


Q ss_pred             CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCC
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGK  168 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  168 (224)
                      ..+.|..+|+.-  -...+.|....+.....+++|+.|.+.+|..-..                                
T Consensus       412 LDGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~--------------------------------  457 (893)
T KOG0291|consen  412 LDGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS--------------------------------  457 (893)
T ss_pred             cCCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeeccce--------------------------------
Confidence            999999999853  1234555433344567899999999888866552                                


Q ss_pred             CceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEE
Q 046107          169 GAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGK  220 (224)
Q Consensus       169 ~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~  220 (224)
                         -.|+..+-+ |+++..+....|.    ++.++.. .+.+.++....+.|-+
T Consensus       458 ---F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  458 ---FEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSWDKTVRI  504 (893)
T ss_pred             ---EEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEeccccceEEE
Confidence               567777754 8888888766653    4444432 3444444444444433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.0031  Score=55.53  Aligned_cols=105  Identities=14%  Similarity=0.186  Sum_probs=66.7

Q ss_pred             ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      ..||.++.++++.+.+.........++++|||++|+++...  ...|+.++++++   ..+.+...  .......+.+||
T Consensus       316 ~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~--~~~~~p~~spdG  390 (433)
T PRK04922        316 PQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPG--SLDESPSFAPNG  390 (433)
T ss_pred             ceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCC--CCCCCceECCCC
Confidence            46888887766666554333344578999999999887643  346889988653   23333221  123456899999


Q ss_pred             CE-EEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCC
Q 046107          127 SF-WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNA  192 (224)
Q Consensus       127 ~l-~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g  192 (224)
                      +. +++.....                                  ...++.++.+|.....+..+.|
T Consensus       391 ~~i~~~s~~~g----------------------------------~~~L~~~~~~g~~~~~l~~~~g  423 (433)
T PRK04922        391 SMVLYATREGG----------------------------------RGVLAAVSTDGRVRQRLVSADG  423 (433)
T ss_pred             CEEEEEEecCC----------------------------------ceEEEEEECCCCceEEcccCCC
Confidence            83 33332221                                  1678999999987777755444

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.69  E-value=0.0068  Score=49.37  Aligned_cols=158  Identities=15%  Similarity=0.179  Sum_probs=88.6

Q ss_pred             cccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-E-ecCccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-V-LEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~-~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      .+.+++.+++ +++|.....                 .+.|+.++.+ |++.. + ..+..-+.||++-.++. +.+++-
T Consensus        23 e~SGLTy~pd~~tLfaV~d~-----------------~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~E   83 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDE-----------------PGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEE   83 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETT-----------------TTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEET
T ss_pred             CccccEEcCCCCeEEEEECC-----------------CCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEc
Confidence            4789999986 567776532                 5789999987 55433 2 35677789999998774 666776


Q ss_pred             CCCeEEEEEccC--CCcccc--eEeeccCC----CCCCceEECCCC-CEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107           89 WKFRCIKHWLKL--GDKRDR--EIFIENLP----GGPDNINLAPDG-SFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL  159 (224)
Q Consensus        89 ~~~~I~~~~~~~--~~~~~~--~~~~~~~~----~~p~~i~~d~dG-~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (224)
                      ..++++.++++.  ......  +.+.-..+    ....|+++|+.+ ++|++-...                        
T Consensus        84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~------------------------  139 (248)
T PF06977_consen   84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK------------------------  139 (248)
T ss_dssp             TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS------------------------
T ss_pred             CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC------------------------
Confidence            678999998842  111111  11110111    236899999974 588775433                        


Q ss_pred             HHhhhhcCCCceEEEEEECC--CCcEEEEEeC---C-CCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          160 INQLMSTGKGAAAKVVKVSA--NGSIIREFND---P-NAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       160 ~~~~~~~~~~~~~~v~~~~~--~G~~~~~~~~---~-~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                               +  ..++.++-  .+..+.....   + ....+..++.+..+  .|.||+=|-.+.+|..++.
T Consensus       140 ---------P--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  140 ---------P--KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR  200 (248)
T ss_dssp             ---------S--EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred             ---------C--hhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence                     1  45666664  2222221111   1 12234456666655  5889999999999988874

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.68  E-value=0.0036  Score=52.17  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             ccceEEecCC-c-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--Cccccc-eeEEecCCCEEEEEe
Q 046107           13 ANDVIEASDG-S-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--GLYFAN-GVALSKHGDFVVVCE   87 (224)
Q Consensus        13 ~n~v~~~~~G-~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--~~~~pn-gia~~~dg~~Lyv~~   87 (224)
                      .+++++.+.. . +.|+.                 .|.-.++++|..+++......  ....-+ --+||+||++||.++
T Consensus         7 gH~~a~~p~~~~avafaR-----------------RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTE   69 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFAR-----------------RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTE   69 (305)
T ss_pred             ccceeeCCCCCeEEEEEe-----------------CCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEec
Confidence            3578888843 2 44443                 234457889988776654432  122223 357899999999997


Q ss_pred             C----CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC-CEEEEEecCCchhhhhhccChhH-HHHHhhchhhHH
Q 046107           88 S----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG-SFWISLIKMNSSAVETVHSSKNR-KQLLEEHPELIN  161 (224)
Q Consensus        88 ~----~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG-~l~va~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~  161 (224)
                      .    ..+.|.+|+.... ......|.. ..-.|-.+.+.+|| +|.||+++-        .+.|.. |..+ .++.   
T Consensus        70 nd~~~g~G~IgVyd~~~~-~~ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI--------~Thpd~GR~kL-Nl~t---  135 (305)
T PF07433_consen   70 NDYETGRGVIGVYDAARG-YRRIGEFPS-HGIGPHELLLMPDGETLVVANGGI--------ETHPDSGRAKL-NLDT---  135 (305)
T ss_pred             cccCCCcEEEEEEECcCC-cEEEeEecC-CCcChhhEEEcCCCCEEEEEcCCC--------ccCcccCceec-Chhh---
Confidence            4    4688999998731 222222321 11269999999999 688887764        233322 1111 1111   


Q ss_pred             hhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCC-cccceeEEEEECCEEEEEe
Q 046107          162 QLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAK-NISFVTSALEFQGNLYLAS  212 (224)
Q Consensus       162 ~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~-~~~~~t~~~~~~g~lyv~~  212 (224)
                              +...+..+| .+|+++.....|... .++--..++..+|.++++.
T Consensus       136 --------M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~  180 (305)
T PF07433_consen  136 --------MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM  180 (305)
T ss_pred             --------cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence                    113566674 579988886654322 2222233444568888775

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.67  E-value=0.00021  Score=41.20  Aligned_cols=37  Identities=19%  Similarity=-0.069  Sum_probs=33.4

Q ss_pred             EecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           64 VLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        64 ~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      +..+...|+||++++.++.||++|...+.|.+.+.+|
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            3457889999999999999999999999999999876

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.66  E-value=0.0051  Score=54.13  Aligned_cols=107  Identities=15%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      ..||.++.++++.+.+..........+++|||++|+++....  ..|+.++++++   ..+.+...  .......+.+||
T Consensus       308 ~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~~--~~~~~p~~spdg  382 (427)
T PRK02889        308 PQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTDT--TRDESPSFAPNG  382 (427)
T ss_pred             cEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccCC--CCccCceECCCC
Confidence            468888876565555432223334678999999887665433  47899988653   22333221  223567899999


Q ss_pred             CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCC
Q 046107          127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAK  193 (224)
Q Consensus       127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~  193 (224)
                      +..+.......                               .  ..++.++.+|+....+..+.|.
T Consensus       383 ~~l~~~~~~~g-------------------------------~--~~l~~~~~~g~~~~~l~~~~g~  416 (427)
T PRK02889        383 RYILYATQQGG-------------------------------R--SVLAAVSSDGRIKQRLSVQGGD  416 (427)
T ss_pred             CEEEEEEecCC-------------------------------C--EEEEEEECCCCceEEeecCCCC
Confidence            84333332210                               0  5688888899887777665553

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.65  E-value=0.0015  Score=57.61  Aligned_cols=74  Identities=19%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             eEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCccc----ceEeeccCCCCCCceEECCCC-------CE
Q 046107           60 QVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRD----REIFIENLPGGPDNINLAPDG-------SF  128 (224)
Q Consensus        60 ~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~----~~~~~~~~~~~p~~i~~d~dG-------~l  128 (224)
                      +++.+++++..|++|++.|||+ |||++...++|++++..+.....    ..+......+.+-||+++|+-       .|
T Consensus        21 ~~~~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        21 DKKVLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             EEEEEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence            4567789999999999999995 99999878999999875421111    111111113467899998764       58


Q ss_pred             EEEEec
Q 046107          129 WISLIK  134 (224)
Q Consensus       129 ~va~~~  134 (224)
                      |++-..
T Consensus       100 Yvsyt~  105 (454)
T TIGR03606       100 YISYTY  105 (454)
T ss_pred             EEEEec
Confidence            988644

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.65  E-value=0.0074  Score=50.29  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             eEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE---EEecCccccceeEEecCCCEEEEEeCCC-
Q 046107           16 VIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS---IVLEGLYFANGVALSKHGDFVVVCESWK-   90 (224)
Q Consensus        16 v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~---~~~~~~~~pngia~~~dg~~Lyv~~~~~-   90 (224)
                      .++.+||+ ||.|...  +           ....|.|-++|.. ....   .+.+..-.|+-|.+.|||+.|.|++..= 
T Consensus        56 g~fs~dG~~LytTEnd--~-----------~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~  121 (305)
T PF07433_consen   56 GVFSPDGRLLYTTEND--Y-----------ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE  121 (305)
T ss_pred             EEEcCCCCEEEEeccc--c-----------CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence            44577886 5555432  1           3467889999987 3333   3456777899999999998899998431 


Q ss_pred             ----------------CeEEEEEccCCCcccceEeeccCC-CCCCceEECCCCCEEEEEecC
Q 046107           91 ----------------FRCIKHWLKLGDKRDREIFIENLP-GGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        91 ----------------~~I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~dG~l~va~~~~  135 (224)
                                      -.+..++...+.+-+.-.+..... -+...++++++|.+|++..+.
T Consensus       122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q  183 (305)
T PF07433_consen  122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ  183 (305)
T ss_pred             cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence                            122223222111100000000000 157899999999999998775

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.0015  Score=56.45  Aligned_cols=118  Identities=11%  Similarity=0.116  Sum_probs=68.3

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhh-----ccCCCCc-eEEEEeCCCCeEE-----EEecCccccceeEEec
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDL-----VEGEPHG-QLLRYDPSSKQVS-----IVLEGLYFANGVALSK   78 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~-----~~~~~~g-~l~~~~~~~g~~~-----~~~~~~~~pngia~~~   78 (224)
                      +..|.+++..++|.+.++....     .++..+     ......+ .+.....+.|...     .++++...+.++++..
T Consensus        66 Le~p~~~~~lP~G~~~v~er~~-----G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~~  140 (399)
T COG2133          66 LEHPWGLARLPDGVLLVTERPT-----GRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEPG  140 (399)
T ss_pred             ccCchhheecCCceEEEEccCC-----ccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEeec
Confidence            7788999999999666665320     011111     0011111 1111111122211     2356677788888875


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC----CCCceEECCCCCEEEEEecCC
Q 046107           79 HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG----GPDNINLAPDGSFWISLIKMN  136 (224)
Q Consensus        79 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~----~p~~i~~d~dG~l~va~~~~~  136 (224)
                      ++  +|+++.  -.+.+++....++.+.++++...|+    .-..|++++||.||++.+..+
T Consensus       141 ~~--~~~~n~--~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~  198 (399)
T COG2133         141 GG--LYVANR--VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNG  198 (399)
T ss_pred             CC--ceEEEE--EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCC
Confidence            43  788864  3566676222355566666655553    347899999999999998873

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.62  E-value=0.012  Score=51.83  Aligned_cols=80  Identities=11%  Similarity=0.042  Sum_probs=46.1

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEE--EEccCCCcccceEeeccCCCCCCceEEC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIK--HWLKLGDKRDREIFIENLPGGPDNINLA  123 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~--~~~~~~~~~~~~~~~~~~~~~p~~i~~d  123 (224)
                      ...||.++.++|+.+.+..........+|+|||++|.++...  ...|+.  ++++.+..+..+.+.....+.....++.
T Consensus       210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS  289 (428)
T PRK01029        210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS  289 (428)
T ss_pred             CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence            457899998877766665433333468999999888766532  235555  4444321223333332212233456888


Q ss_pred             CCCC
Q 046107          124 PDGS  127 (224)
Q Consensus       124 ~dG~  127 (224)
                      +||+
T Consensus       290 PDG~  293 (428)
T PRK01029        290 PDGT  293 (428)
T ss_pred             CCCC
Confidence            9987

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.60  E-value=0.0012  Score=59.55  Aligned_cols=124  Identities=16%  Similarity=0.264  Sum_probs=74.2

Q ss_pred             cccccccceEEec-CCcEEEEeCCCC-CCc-chhhhhhccCCCCceEEEEeCCCC-------eEEEEec-----------
Q 046107            8 HLIRFANDVIEAS-DGSLYITVSSTK-FAP-KAYYLDLVEGEPHGQLLRYDPSSK-------QVSIVLE-----------   66 (224)
Q Consensus         8 ~~~~~~n~v~~~~-~G~ly~t~~~~~-~~~-~~~~~~~~~~~~~g~l~~~~~~~g-------~~~~~~~-----------   66 (224)
                      .+|.-|++|++++ +|.|||+-+... ... .............|.||+++++.+       +++.+..           
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            4689999999998 589999876522 000 000111223456899999998755       4544321           


Q ss_pred             -------CccccceeEEecCCCEEEEEeCC-CCe-----------EEEEEc--------cCCCcccceEeeccC-CCCCC
Q 046107           67 -------GLYFANGVALSKHGDFVVVCESW-KFR-----------CIKHWL--------KLGDKRDREIFIENL-PGGPD  118 (224)
Q Consensus        67 -------~~~~pngia~~~dg~~Lyv~~~~-~~~-----------I~~~~~--------~~~~~~~~~~~~~~~-~~~p~  118 (224)
                             .+..|.+|+++++|+ |||++-. ...           ++.+..        .+...+..+.|.... .....
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t  505 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT  505 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence                   256788999999998 8877733 222           222211        111223344444322 23689


Q ss_pred             ceEECCCCC-EEEEE
Q 046107          119 NINLAPDGS-FWISL  132 (224)
Q Consensus       119 ~i~~d~dG~-l~va~  132 (224)
                      |+++.+||+ ||+..
T Consensus       506 G~~fspDg~tlFvni  520 (524)
T PF05787_consen  506 GPCFSPDGRTLFVNI  520 (524)
T ss_pred             cceECCCCCEEEEEE
Confidence            999999997 66643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.58  E-value=0.0064  Score=53.35  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||+++.++++.+.+..........+++|||+.|+++....  ..|+.++++++   ..+.+...  ..-....+.+|
T Consensus       310 ~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~~--~~~~~p~~spd  384 (430)
T PRK00178        310 KPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTDT--SLDESPSVAPN  384 (430)
T ss_pred             CceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC---CEEEccCC--CCCCCceECCC
Confidence            4468888877677665543333334578999999998877433  36888888753   23333321  12234578999


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCC
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNA  192 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g  192 (224)
                      |+..+-.....                               ..  ..++.++.+|+....+..+.|
T Consensus       385 g~~i~~~~~~~-------------------------------g~--~~l~~~~~~g~~~~~l~~~~g  418 (430)
T PRK00178        385 GTMLIYATRQQ-------------------------------GR--GVLMLVSINGRVRLPLPTAQG  418 (430)
T ss_pred             CCEEEEEEecC-------------------------------Cc--eEEEEEECCCCceEECcCCCC
Confidence            98444333221                               01  578888888887766655444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.58  E-value=0.013  Score=51.03  Aligned_cols=82  Identities=13%  Similarity=0.072  Sum_probs=50.2

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...||.++.++++.+.+..........+++|||++|+++..  ....|+.+++++..   .+.+. .........++.++
T Consensus       257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~-~~~~~~~~~~~spd  332 (417)
T TIGR02800       257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLT-FRGGYNASPSWSPD  332 (417)
T ss_pred             CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEee-cCCCCccCeEECCC
Confidence            34688889876665555433333346789999998866543  33479999887532   22222 12234567789999


Q ss_pred             CCEEEEEe
Q 046107          126 GSFWISLI  133 (224)
Q Consensus       126 G~l~va~~  133 (224)
                      |+.++...
T Consensus       333 g~~i~~~~  340 (417)
T TIGR02800       333 GDLIAFVH  340 (417)
T ss_pred             CCEEEEEE
Confidence            98554433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.58  E-value=0.001  Score=60.27  Aligned_cols=88  Identities=14%  Similarity=0.124  Sum_probs=64.7

Q ss_pred             ceEEEEeCCC-----CeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCC------CcccceEee-cc-CCC
Q 046107           49 GQLLRYDPSS-----KQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLG------DKRDREIFI-EN-LPG  115 (224)
Q Consensus        49 g~l~~~~~~~-----g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~------~~~~~~~~~-~~-~~~  115 (224)
                      ++|-.+|..+     .++.....-.+.|+|++++|||+++|++...++.|..++.+..      ++....++. +. ..-
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            4688888765     2344556678999999999999999999999999999998631      111111222 11 223


Q ss_pred             CCCceEECCCCCEEEEEecCC
Q 046107          116 GPDNINLAPDGSFWISLIKMN  136 (224)
Q Consensus       116 ~p~~i~~d~dG~l~va~~~~~  136 (224)
                      .|-..++|.+|+.|++-+-.+
T Consensus       376 GPLHTaFDg~G~aytslf~ds  396 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLFLDS  396 (635)
T ss_pred             CcceEEECCCCCEEEeEeecc
Confidence            799999999999999987763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.58  E-value=0.019  Score=45.66  Aligned_cols=64  Identities=17%  Similarity=0.090  Sum_probs=38.9

Q ss_pred             EEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEE
Q 046107           17 IEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKH   96 (224)
Q Consensus        17 ~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~   96 (224)
                      ++..+|.+|+++                  ..+.|+.+|..+|+.....+............+ +.+||... .++|+.+
T Consensus        32 ~~~~~~~v~~~~------------------~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~v~v~~~-~~~l~~~   91 (238)
T PF13360_consen   32 AVPDGGRVYVAS------------------GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG-GRVYVGTS-DGSLYAL   91 (238)
T ss_dssp             EEEETTEEEEEE------------------TTSEEEEEETTTSEEEEEEECSSCGGSGEEEET-TEEEEEET-TSEEEEE
T ss_pred             EEEeCCEEEEEc------------------CCCEEEEEECCCCCEEEEeeccccccceeeecc-cccccccc-eeeeEec
Confidence            344577788874                  357899999877876543332121122222333 45888874 4599999


Q ss_pred             EccC
Q 046107           97 WLKL  100 (224)
Q Consensus        97 ~~~~  100 (224)
                      +...
T Consensus        92 d~~t   95 (238)
T PF13360_consen   92 DAKT   95 (238)
T ss_dssp             ETTT
T ss_pred             ccCC
Confidence            9653

...

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.57  E-value=0.016  Score=47.22  Aligned_cols=110  Identities=20%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             ccceeEEecCC-CEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChh
Q 046107           70 FANGVALSKHG-DFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKN  148 (224)
Q Consensus        70 ~pngia~~~dg-~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~  148 (224)
                      .-+-++|+|.. +.++++.+....|-.+++++-++  ...++ +..++.+-+++.+||.+....+..             
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSpDGslcasGgkd-------------  213 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSPDGSLCASGGKD-------------  213 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccc-cccccEEEEEECCCCCEEecCCCC-------------
Confidence            34456677764 33344445555555555544111  11222 123466778888888887775544             


Q ss_pred             HHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          149 RKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                             +.++..| .+|+-+..+..  .   ..+..+++..++.|+.-.-+..|-+.++
T Consensus       214 -----------------------g~~~LwdL~~~k~lysl~a--~---~~v~sl~fspnrywL~~at~~sIkIwdl  261 (315)
T KOG0279|consen  214 -----------------------GEAMLWDLNEGKNLYSLEA--F---DIVNSLCFSPNRYWLCAATATSIKIWDL  261 (315)
T ss_pred             -----------------------ceEEEEEccCCceeEeccC--C---CeEeeEEecCCceeEeeccCCceEEEec
Confidence                                   4555555 35666555532  1   2466677888999999888888777664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.55  E-value=0.0062  Score=53.51  Aligned_cols=122  Identities=13%  Similarity=-0.027  Sum_probs=76.4

Q ss_pred             eEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC----
Q 046107           16 VIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK----   90 (224)
Q Consensus        16 v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~----   90 (224)
                      ..+.||| .|||+...               .....||+++.++++.+.+...... + .+++|||+.|.++....    
T Consensus       282 p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        282 GNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             cEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEEEEEEcCCCccc
Confidence            3566777 47776532               1334799999987877665432211 2 58999999885555332    


Q ss_pred             ----CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           91 ----FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        91 ----~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                          ..|+.++++++   +.+.+...  +.-....+.|||+ ++++.....                             
T Consensus       345 ~~~~~~I~v~d~~~g---~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~-----------------------------  390 (419)
T PRK04043        345 GKNTFNLYLISTNSD---YIRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN-----------------------------  390 (419)
T ss_pred             CCCCcEEEEEECCCC---CeEECCCC--CCcCCeEECCCCCEEEEEEccCC-----------------------------
Confidence                58999998763   23333321  2223478899997 444433221                             


Q ss_pred             cCCCceEEEEEECCCCcEEEEEeCCCCC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFNDPNAK  193 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~  193 (224)
                           ...+..++.+|.....+....|.
T Consensus       391 -----~~~L~~~~l~g~~~~~l~~~~g~  413 (419)
T PRK04043        391 -----QSALGIIRLNYNKSFLFPLKVGK  413 (419)
T ss_pred             -----cEEEEEEecCCCeeEEeecCCCc
Confidence                 16789999999887777665554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.51  E-value=0.011  Score=51.93  Aligned_cols=78  Identities=21%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             ceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      ..|+.+|.++.....+.........++|+|||+.|+++..  ....|+.+++.++   ..+.+. ...+.-...++.|||
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---~~~~l~-~~~g~~~~~~wSPDG  259 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---ARKVVA-SFRGHNGAPAFSPDG  259 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---ceEEEe-cCCCccCceeECCCC
Confidence            5677777764333333333333467999999998866543  2357999998652   223332 223333467888998


Q ss_pred             CEEE
Q 046107          127 SFWI  130 (224)
Q Consensus       127 ~l~v  130 (224)
                      +..+
T Consensus       260 ~~La  263 (429)
T PRK01742        260 SRLA  263 (429)
T ss_pred             CEEE
Confidence            7433

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.50  E-value=0.0011  Score=58.83  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=50.0

Q ss_pred             ccccceeEEecCCCEEEEEeCCCC----------------eEEEEEccCC----CcccceEeecc-CC------------
Q 046107           68 LYFANGVALSKHGDFVVVCESWKF----------------RCIKHWLKLG----DKRDREIFIEN-LP------------  114 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~----------------~I~~~~~~~~----~~~~~~~~~~~-~~------------  114 (224)
                      ...|.+|++.|....+|++.++..                +|++|-+.+.    ...+.++|+.. .+            
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            455889999998878999987654                7899887631    22345666531 01            


Q ss_pred             ----CCCCceEECCCCCEEEEEecCC
Q 046107          115 ----GGPDNINLAPDGSFWISLIKMN  136 (224)
Q Consensus       115 ----~~p~~i~~d~dG~l~va~~~~~  136 (224)
                          ..||||++|+.|+||++.-...
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg~~  521 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDGSG  521 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecCCC
Confidence                1399999999999999986653

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.50  E-value=0.0013  Score=59.16  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             cCccccceeEEecCCCEEEEEeCCCC-------------------eEEEEEccCC----CcccceEeecc-C--------
Q 046107           66 EGLYFANGVALSKHGDFVVVCESWKF-------------------RCIKHWLKLG----DKRDREIFIEN-L--------  113 (224)
Q Consensus        66 ~~~~~pngia~~~dg~~Lyv~~~~~~-------------------~I~~~~~~~~----~~~~~~~~~~~-~--------  113 (224)
                      +.+..|.+|.++|....+|++.+...                   +|+++.+++.    ...+.++++.. .        
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            34667889999997778999986655                   8999998743    11123333321 1        


Q ss_pred             --------CCCCCceEECCCCCEEEEEecC
Q 046107          114 --------PGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus       114 --------~~~p~~i~~d~dG~l~va~~~~  135 (224)
                              ...||||++|++|+||++.-..
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~  456 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGNLWIQEDGG  456 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCCEEEEeCCC
Confidence                    1379999999999999997655

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.49  E-value=0.014  Score=51.83  Aligned_cols=114  Identities=18%  Similarity=0.121  Sum_probs=77.8

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccC
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSS  146 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~  146 (224)
                      .....+.++|+||++ ..++-+....|..+++... ....+++. +-......+++.++|++.++....           
T Consensus       202 h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~-~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D-----------  267 (456)
T KOG0266|consen  202 HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDD-GRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDD-----------  267 (456)
T ss_pred             cccceeeeEECCCCc-EEEEecCCceEEEeeccCC-CeEEEEec-CCCCceEEEEecCCCCEEEEecCC-----------
Confidence            345567999999997 7777788899999998321 11234443 223456899999999988888777           


Q ss_pred             hhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                                               +.|...|.. |+.++.+....+    .++.+... +++++++......|.+.++
T Consensus       268 -------------------------~tvriWd~~~~~~~~~l~~hs~----~is~~~f~~d~~~l~s~s~d~~i~vwd~  317 (456)
T KOG0266|consen  268 -------------------------GTVRIWDVRTGECVRKLKGHSD----GISGLAFSPDGNLLVSASYDGTIRVWDL  317 (456)
T ss_pred             -------------------------CcEEEEeccCCeEEEeeeccCC----ceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence                                     456666644 788888876654    35665543 5566655555777776654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.49  E-value=0.015  Score=51.23  Aligned_cols=96  Identities=13%  Similarity=0.110  Sum_probs=58.1

Q ss_pred             ceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC--CCeEEEEecCccccceeEEecCCCEEEEEeCC--
Q 046107           15 DVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS--SKQVSIVLEGLYFANGVALSKHGDFVVVCESW--   89 (224)
Q Consensus        15 ~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--   89 (224)
                      ..++.|||+ |+|+...               .+...||+++.+  ++..+.+..........+++|||++|+++...  
T Consensus       285 ~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g  349 (428)
T PRK01029        285 NPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG  349 (428)
T ss_pred             CeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC
Confidence            467788885 6665321               123368887653  23344443333344578999999988766533  


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEE
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFW  129 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~  129 (224)
                      ..+|+.++++++   +.+.+... .....+..+.+||+..
T Consensus       350 ~~~I~v~dl~~g---~~~~Lt~~-~~~~~~p~wSpDG~~L  385 (428)
T PRK01029        350 VRQICVYDLATG---RDYQLTTS-PENKESPSWAIDSLHL  385 (428)
T ss_pred             CcEEEEEECCCC---CeEEccCC-CCCccceEECCCCCEE
Confidence            357999998763   23333322 2345678899999733

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.017  Score=51.31  Aligned_cols=106  Identities=20%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeC-CCCe-EEEEecCccccceeEEecCCCEEEEE
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDP-SSKQ-VSIVLEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~g~-~~~~~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      .-...+++++.++|.+.++-.                 .+..|..+|. +.+. ++.+.....+.+.++|+|+|+ ++++
T Consensus       202 h~~~v~~~~fs~d~~~l~s~s-----------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~S  263 (456)
T KOG0266|consen  202 HTRGVSDVAFSPDGSYLLSGS-----------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVS  263 (456)
T ss_pred             cccceeeeEECCCCcEEEEec-----------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-EEEE
Confidence            345567888888888666532                 2444555554 3333 344444556668999999995 8888


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      -+..+.|..+++.+++  ..+.+. .....-.++++.++|++.++....
T Consensus       264 gs~D~tvriWd~~~~~--~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  264 GSDDGTVRIWDVRTGE--CVRKLK-GHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             ecCCCcEEEEeccCCe--EEEeee-ccCCceEEEEECCCCCEEEEcCCC
Confidence            8899999999987521  123332 222345788899999988887655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.46  E-value=0.016  Score=47.76  Aligned_cols=150  Identities=14%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE----E-ecC----ccccceeEEecCC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI----V-LEG----LYFANGVALSKHG   80 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~----~-~~~----~~~pngia~~~dg   80 (224)
                      +.-|+.|+...+|.+.+++..               ...-.++++++++.....    + .+.    =++-.|+|++|..
T Consensus       128 ~~DpE~Ieyig~n~fvi~dER---------------~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~  192 (316)
T COG3204         128 FSDPETIEYIGGNQFVIVDER---------------DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD  192 (316)
T ss_pred             cCChhHeEEecCCEEEEEehh---------------cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC
Confidence            666778888777777777743               123345667776332111    1 111    2334599999988


Q ss_pred             CEEEEEe-CCCCeEEEEEccCCCcc---------cceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhH
Q 046107           81 DFVVVCE-SWKFRCIKHWLKLGDKR---------DREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNR  149 (224)
Q Consensus        81 ~~Lyv~~-~~~~~I~~~~~~~~~~~---------~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~  149 (224)
                      +.|||+- ...-+|+.++.....+.         ..+.+.    .-..|+.+|+. |+++|-....              
T Consensus       193 ~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~----~DvSgl~~~~~~~~LLVLS~ES--------------  254 (316)
T COG3204         193 HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV----LDVSGLEFNAITNSLLVLSDES--------------  254 (316)
T ss_pred             ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe----eccccceecCCCCcEEEEecCC--------------
Confidence            8888886 55567777763211110         001111    12457777753 6677765555              


Q ss_pred             HHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCC-----cccceeEEE-EECCEEEEEeCC
Q 046107          150 KQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAK-----NISFVTSAL-EFQGNLYLASIN  214 (224)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~-----~~~~~t~~~-~~~g~lyv~~~~  214 (224)
                                            ..++++|-+|.++..+...+|.     .++..-+++ +++|+||+.|-.
T Consensus       255 ----------------------r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         255 ----------------------RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             ----------------------ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence                                  5899999999987776554442     223333444 567999999854

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.46  E-value=0.021  Score=49.64  Aligned_cols=127  Identities=13%  Similarity=0.136  Sum_probs=77.3

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CC-CCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LP-GGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~-~~p~~i~~d~d  125 (224)
                      .|.++.+|..+|+... ......+..+++.  ++.||+.+. .++|+.+++.+++    ..|... .. ......++ .+
T Consensus       265 ~g~l~ald~~tG~~~W-~~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v-~~  335 (394)
T PRK11138        265 NGNLVALDLRSGQIVW-KREYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGV----ELWSQSDLLHRLLTAPVL-YN  335 (394)
T ss_pred             CCeEEEEECCCCCEEE-eecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCc----EEEcccccCCCcccCCEE-EC
Confidence            5789999988776432 2223333444543  446999874 5789999986432    234221 11 11122333 36


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      |.+|+++..                                     +.++.+|+ +|+++..+....+.   ..+..+..
T Consensus       336 g~l~v~~~~-------------------------------------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~  375 (394)
T PRK11138        336 GYLVVGDSE-------------------------------------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVA  375 (394)
T ss_pred             CEEEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEE
Confidence            889988654                                     46788886 59988877653322   12233457


Q ss_pred             CCEEEEEeCCCCeEEEeeCC
Q 046107          205 QGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~~~  224 (224)
                      +++||+++.. ..|..+++|
T Consensus       376 ~~~l~v~t~~-G~l~~~~~~  394 (394)
T PRK11138        376 DDKLLIQARD-GTVYAITRP  394 (394)
T ss_pred             CCEEEEEeCC-ceEEEEeCC
Confidence            8899999764 577777765

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.44  E-value=0.00034  Score=36.86  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=18.7

Q ss_pred             cccccceEEecCCcEEEEeCC
Q 046107           10 IRFANDVIEASDGSLYITVSS   30 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~   30 (224)
                      +..|++|+++++|+||++|..
T Consensus         1 f~~P~gvav~~~g~i~VaD~~   21 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSG   21 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECC
T ss_pred             CcCCcEEEEeCCCCEEEEECC
Confidence            568999999999999999954

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.41  E-value=0.0021  Score=57.21  Aligned_cols=128  Identities=11%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             eccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-------eEEEEe-----cCcc---
Q 046107            6 LCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-------QVSIVL-----EGLY---   69 (224)
Q Consensus         6 ~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-------~~~~~~-----~~~~---   69 (224)
                      ...+|.-|++|++.+ .|.+|++.+...- +..-..........|.|+||-+.++       +++.+.     +...   
T Consensus       412 GAT~mdRpE~i~~~p~~g~Vy~~lTNn~~-r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~  490 (616)
T COG3211         412 GATPMDRPEWIAVNPGTGEVYFTLTNNGK-RSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA  490 (616)
T ss_pred             CCccccCccceeecCCcceEEEEeCCCCc-cccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc
Confidence            345788999999998 4789998765210 1111122334566889999998765       566553     1233   


Q ss_pred             ----------ccceeEEecCCCEEEEEeCCCC--------eEEEEEccCCCcccceEeeccCC-CCCCceEECCCCC-EE
Q 046107           70 ----------FANGVALSKHGDFVVVCESWKF--------RCIKHWLKLGDKRDREIFIENLP-GGPDNINLAPDGS-FW  129 (224)
Q Consensus        70 ----------~pngia~~~dg~~Lyv~~~~~~--------~I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~dG~-l~  129 (224)
                                .|.+|+++|.|+ |||+.-...        .+......++..++.+.|..... ....|.++.+||+ +|
T Consensus       491 ~~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF  569 (616)
T COG3211         491 SANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF  569 (616)
T ss_pred             ccCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence                      389999999997 887763322        12222222344566666654332 3678999999985 88


Q ss_pred             EEEecC
Q 046107          130 ISLIKM  135 (224)
Q Consensus       130 va~~~~  135 (224)
                      |+....
T Consensus       570 V~vQHP  575 (616)
T COG3211         570 VNVQHP  575 (616)
T ss_pred             EEecCC
Confidence            887554

>PTZ00421 coronin; Provisional

Probab=97.40  E-value=0.036  Score=49.75  Aligned_cols=64  Identities=13%  Similarity=0.021  Sum_probs=43.0

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .....++|+|++..++++.+..+.|..|++....  ....+ .........+++.++|++.++....
T Consensus       126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l-~~h~~~V~sla~spdG~lLatgs~D  189 (493)
T PTZ00421        126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVI-KCHSDQITSLEWNLDGSLLCTTSKD  189 (493)
T ss_pred             CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEE-cCCCCceEEEEEECCCCEEEEecCC
Confidence            4456899999864477777778899999986421  11122 1122345788999999988776655

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.36  E-value=0.014  Score=50.32  Aligned_cols=148  Identities=16%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCe
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~   92 (224)
                      ...++.|||.|+.|-                 .++|.|-.||.+......-..+...| ..|+|+.+| +..++....++
T Consensus       351 ts~~fHpDgLifgtg-----------------t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~  412 (506)
T KOG0289|consen  351 TSAAFHPDGLIFGTG-----------------TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGS  412 (506)
T ss_pred             EEeeEcCCceEEecc-----------------CCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCe
Confidence            356677777777663                 34666666665433221112334444 589999988 55666677788


Q ss_pred             EEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceE
Q 046107           93 CIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAA  172 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  172 (224)
                      |..||+.-  +...+.+.-........+.+|.-|.+.+..+..                                    -
T Consensus       413 V~lwDLRK--l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------------------------------------l  454 (506)
T KOG0289|consen  413 VKLWDLRK--LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------------------------------------L  454 (506)
T ss_pred             EEEEEehh--hcccceeeccccccceeEEEcCCCCeEEeecce------------------------------------e
Confidence            99999863  223333321111235789999999988876444                                    5


Q ss_pred             EEEEECCC---CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEe
Q 046107          173 KVVKVSAN---GSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKL  221 (224)
Q Consensus       173 ~v~~~~~~---G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~  221 (224)
                      .|+.+...   ...+..+++..|.    .+++.+...-.|+++-+.+++.++
T Consensus       455 ~Vy~~~k~~k~W~~~~~~~~~sg~----st~v~Fg~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  455 QVYICKKKTKSWTEIKELADHSGL----STGVRFGEHAQYLASTSMDAILRL  502 (506)
T ss_pred             EEEEEecccccceeeehhhhcccc----cceeeecccceEEeeccchhheEE
Confidence            77777743   4445555554442    445445566677777777777654

>PTZ00420 coronin; Provisional

Probab=97.36  E-value=0.057  Score=49.22  Aligned_cols=63  Identities=5%  Similarity=-0.034  Sum_probs=44.6

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+.++|+|++..++++.+..+.|..|++....  ....+  ........++++++|+++++....
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i--~~~~~V~SlswspdG~lLat~s~D  188 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQI--NMPKKLSSLKWNIKGNLLSGTCVG  188 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEE--ecCCcEEEEEECCCCCEEEEEecC
Confidence            4457899999988777777778899999986422  11111  123356789999999998876655

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.31  E-value=0.0027  Score=50.71  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             cccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107           10 IRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        10 ~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      +--+|+++.+.+- .+|++|+. +|....|-++.-.+....+=..+|..+.    .......|.|++++.+|+ |||+..
T Consensus       157 v~IsNgl~Wd~d~K~fY~iDsl-n~~V~a~dyd~~tG~~snr~~i~dlrk~----~~~e~~~PDGm~ID~eG~-L~Va~~  230 (310)
T KOG4499|consen  157 VGISNGLAWDSDAKKFYYIDSL-NYEVDAYDYDCPTGDLSNRKVIFDLRKS----QPFESLEPDGMTIDTEGN-LYVATF  230 (310)
T ss_pred             ccCCccccccccCcEEEEEccC-ceEEeeeecCCCcccccCcceeEEeccC----CCcCCCCCCcceEccCCc-EEEEEe
Confidence            3457899998764 79999865 2433323222211111110001111100    112567899999999986 999999


Q ss_pred             CCCeEEEEEccCCCcccceEeecc-CC-CCCCceEECCC--CCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIEN-LP-GGPDNINLAPD--GSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~-~~-~~p~~i~~d~d--G~l~va~~~~  135 (224)
                      ++++|+++++..++     .+.+. +| ......++...  .-+|++....
T Consensus       231 ng~~V~~~dp~tGK-----~L~eiklPt~qitsccFgGkn~d~~yvT~aa~  276 (310)
T KOG4499|consen  231 NGGTVQKVDPTTGK-----ILLEIKLPTPQITSCCFGGKNLDILYVTTAAK  276 (310)
T ss_pred             cCcEEEEECCCCCc-----EEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence            99999999997533     22211 22 24456666655  3477776544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.29  E-value=0.035  Score=51.01  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=78.0

Q ss_pred             eeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCE
Q 046107            4 IHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDF   82 (224)
Q Consensus         4 ~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~   82 (224)
                      +|..+.-....-|++|+.|.|.++-..                -.=.|+.++.++|+..-+..+..+| .+++++|+|+ 
T Consensus       429 Tft~P~p~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-  491 (893)
T KOG0291|consen  429 TFTSPEPIQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-  491 (893)
T ss_pred             eecCCCceeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-
Confidence            445555455567889999988887432                1225788888888877777888888 4899999998 


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      +.++-++...|..+++-+. -++.+.+  ......-++++-|||. +-|+...+
T Consensus       492 ~LaS~SWDkTVRiW~if~s-~~~vEtl--~i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWDIFSS-SGTVETL--EIRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             eEEeccccceEEEEEeecc-CceeeeE--eeccceeEEEEcCCCCeEEEEEecc
Confidence            7788888899999987431 1223333  1233456788888886 77776665

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.29  E-value=0.051  Score=43.19  Aligned_cols=132  Identities=16%  Similarity=0.159  Sum_probs=71.3

Q ss_pred             CceEEEEeCCCCeEEEEecCc-ccccee--EEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGL-YFANGV--ALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~-~~pngi--a~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      .|.|..+|+++|+...-..-. .....+  ++. +++.+|+++ ..+.|+.+++..++    ..|....++.......-.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVAS-GDGNLYALDAKTGK----VLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEE-TTSEEEEEETTTSE----EEEEEECSSCGGSGEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEc-CCCEEEEEECCCCC----EEEEeeccccccceeeec
Confidence            366777787656533222111 122333  333 455799995 67899999985422    123212222212222334


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEE-eCCC-CCcccceeEE
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREF-NDPN-AKNISFVTSA  201 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~-~~~~-g~~~~~~t~~  201 (224)
                      ++.+|++...                                     +.+..+| .+|+.+... .... ..........
T Consensus        76 ~~~v~v~~~~-------------------------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~  118 (238)
T PF13360_consen   76 GGRVYVGTSD-------------------------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP  118 (238)
T ss_dssp             TTEEEEEETT-------------------------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred             ccccccccce-------------------------------------eeeEecccCCcceeeeeccccccccccccccCc
Confidence            6788888733                                     4789999 779998773 3321 1112223334


Q ss_pred             EEECCEEEEEeCCCCeEEEeeC
Q 046107          202 LEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       202 ~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      ...++.+|++.. +..|..+++
T Consensus       119 ~~~~~~~~~~~~-~g~l~~~d~  139 (238)
T PF13360_consen  119 AVDGDRLYVGTS-SGKLVALDP  139 (238)
T ss_dssp             EEETTEEEEEET-CSEEEEEET
T ss_pred             eEecCEEEEEec-cCcEEEEec
Confidence            445778888776 456665553

...

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.017  Score=45.50  Aligned_cols=162  Identities=12%  Similarity=0.047  Sum_probs=97.1

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE---ecCccccceeEEec
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV---LEGLYFANGVALSK   78 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~---~~~~~~pngia~~~   78 (224)
                      |++|.+..-.+..++..+ +|.++.+.-.               .+...|.+++..+|+...-   ..+-.+..||.-. 
T Consensus        37 i~~yphDs~sfTQGL~~~-~g~i~esTG~---------------yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-   99 (262)
T COG3823          37 IRTYPHDSTSFTQGLEYL-DGHILESTGL---------------YGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-   99 (262)
T ss_pred             EEeccCchhhhhcceeee-CCEEEEeccc---------------cccceeEEEeccCceEEEEeecCCccccccceeec-
Confidence            455666666666666654 4466666422               2345688888876654321   1133455688776 


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           79 HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        79 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                       |+.+|+-....+.-++|+++.  +.+...+  ...|.-.|++.|. -++|.+++..                       
T Consensus       100 -gd~~y~LTw~egvaf~~d~~t--~~~lg~~--~y~GeGWgLt~d~-~~LimsdGsa-----------------------  150 (262)
T COG3823         100 -GDYFYQLTWKEGVAFKYDADT--LEELGRF--SYEGEGWGLTSDD-KNLIMSDGSA-----------------------  150 (262)
T ss_pred             -cceEEEEEeccceeEEEChHH--hhhhccc--ccCCcceeeecCC-cceEeeCCce-----------------------
Confidence             456999988888888898864  1122222  2345567777774 4588887765                       


Q ss_pred             hHHhhhhcCCCceEEEEEECCC-CcEEEEE-eCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          159 LINQLMSTGKGAAAKVVKVSAN-GSIIREF-NDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~-~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                    .+...||+ -+....+ ..-+|.++....-+-..+|.||.--+..++|.|++-
T Consensus       151 --------------tL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p  203 (262)
T COG3823         151 --------------TLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDP  203 (262)
T ss_pred             --------------EEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcC
Confidence                          34444554 1211111 111354445555555678899999999999999863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.088  Score=43.55  Aligned_cols=154  Identities=15%  Similarity=0.092  Sum_probs=88.1

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      .|.+.+.|-+..+++-                 ..+..|.-||.+..+..-+. ....+.-+|++|.|- +|.+...+..
T Consensus       103 V~sL~~sP~~d~FlS~-----------------S~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GL-ifA~~~~~~~  163 (311)
T KOG1446|consen  103 VNSLSVSPKDDTFLSS-----------------SLDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGL-IFALANGSEL  163 (311)
T ss_pred             EEEEEecCCCCeEEec-----------------ccCCeEEeeEecCCCCceEE-ecCCCcceeECCCCc-EEEEecCCCe
Confidence            3455666555555553                 23455555564422222222 345566789999983 5555566669


Q ss_pred             EEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCc
Q 046107           93 CIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGA  170 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  170 (224)
                      |..||+.--..+..+.|.-.  ......+|.+.+||...+-....                                   
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-----------------------------------  208 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-----------------------------------  208 (311)
T ss_pred             EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-----------------------------------
Confidence            99999862112333344211  12367899999999844443333                                   


Q ss_pred             eEEEEEECC-CCcEEEEEeCCCC-CcccceeEEEE-ECCEEEEEeCCCCeEEEeeC
Q 046107          171 AAKVVKVSA-NGSIIREFNDPNA-KNISFVTSALE-FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       171 ~~~v~~~~~-~G~~~~~~~~~~g-~~~~~~t~~~~-~~g~lyv~~~~~~~i~~~~~  223 (224)
                       +.++.+|+ +|.++..+..... ..++  -.++. -+++..+++....+|.+.++
T Consensus       209 -s~~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  209 -SFIYLLDAFDGTVKSTFSGYPNAGNLP--LSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             -CcEEEEEccCCcEeeeEeeccCCCCcc--eeEEECCCCcEEEEecCCCcEEEEEc
Confidence             45777774 7888777654322 2222  23333 36677777777777776654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.20  E-value=0.048  Score=42.67  Aligned_cols=82  Identities=17%  Similarity=0.032  Sum_probs=52.7

Q ss_pred             CceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEe-CCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .-.|++++........+. ....-...++|+|+|+.+.|.. ....+|..|++++.      ..........+.+.++|+
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~------~i~~~~~~~~n~i~wsP~  111 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK------KIFSFGTQPRNTISWSPD  111 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc------EeEeecCCCceEEEECCC
Confidence            346888876544444442 2222368999999999887665 34558888988631      112122234578999999


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      |++.+..+-+
T Consensus       112 G~~l~~~g~~  121 (194)
T PF08662_consen  112 GRFLVLAGFG  121 (194)
T ss_pred             CCEEEEEEcc
Confidence            9977776544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.17  E-value=0.0095  Score=48.95  Aligned_cols=142  Identities=15%  Similarity=0.213  Sum_probs=78.0

Q ss_pred             eEEEEeCCCCeEEEE---ecC-ccccceeEEecCCCEEEEEeC----CCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107           50 QLLRYDPSSKQVSIV---LEG-LYFANGVALSKHGDFVVVCES----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN  121 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~---~~~-~~~pngia~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~  121 (224)
                      ..+.+|+++++.-+.   .++ ..+-+| ++||||++||.++.    +.+-|-.|+.+-+ ......|.. ..-.|-.+.
T Consensus        92 f~~vfD~~~~~~pv~~~s~~~RHfyGHG-vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t-~GiGpHev~  168 (366)
T COG3490          92 FAMVFDPNGAQEPVTLVSQEGRHFYGHG-VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFST-HGIGPHEVT  168 (366)
T ss_pred             eEEEECCCCCcCcEEEecccCceeeccc-ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceeccccc-CCcCcceeE
Confidence            356677764432222   122 223334 68999999999984    4567888887632 111112211 122689999


Q ss_pred             ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeE
Q 046107          122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTS  200 (224)
Q Consensus       122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~  200 (224)
                      +-+||+..+...++       |...|...+.-..+.+       ..    -++..+| .+|++++....|....+-.+--
T Consensus       169 lm~DGrtlvvanGG-------IethpdfgR~~lNlds-------Me----PSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         169 LMADGRTLVVANGG-------IETHPDFGRTELNLDS-------ME----PSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             EecCCcEEEEeCCc-------eecccccCccccchhh-------cC----ccEEEEeccccchhhhccCchhhhhcceee
Confidence            99999977776665       3333321111111111       11    1345566 7899888776663322222223


Q ss_pred             E-EEECCEEEEEe
Q 046107          201 A-LEFQGNLYLAS  212 (224)
Q Consensus       201 ~-~~~~g~lyv~~  212 (224)
                      + ...+|++|+++
T Consensus       231 ld~g~dgtvwfgc  243 (366)
T COG3490         231 LDIGRDGTVWFGC  243 (366)
T ss_pred             eeeCCCCcEEEEE
Confidence            3 34479999987

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.05  E-value=0.046  Score=47.88  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             Cc-eEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HG-QLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g-~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      +| .|-.++.++++++.+..++.....+.+++||+++.|++ .+.+|+.++++.+   +.+..-....+...++++.+++
T Consensus       380 dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididng---nv~~idkS~~~lItdf~~~~ns  455 (668)
T COG4946         380 DGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNS  455 (668)
T ss_pred             CCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCC---CeeEecccccceeEEEEEcCCc
Confidence            44 67788888888888888888889999999999787776 6789999999853   3443211234567788888888


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      ++..=..+.
T Consensus       456 r~iAYafP~  464 (668)
T COG4946         456 RWIAYAFPE  464 (668)
T ss_pred             eeEEEecCc
Confidence            766555443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.99  E-value=0.037  Score=50.76  Aligned_cols=128  Identities=14%  Similarity=0.073  Sum_probs=74.5

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEE---EEccCCC--cccceEeeccCCCCCCceE
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIK---HWLKLGD--KRDREIFIENLPGGPDNIN  121 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~---~~~~~~~--~~~~~~~~~~~~~~p~~i~  121 (224)
                      ..+.++.++.++++...  ........+.++|||++|.+..  .++|+.   ...+++.  ++....+.......+..+.
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence            34566655555444332  1223477899999999886654  357777   3333321  2222222222223457899


Q ss_pred             ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEE
Q 046107          122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSA  201 (224)
Q Consensus       122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~  201 (224)
                      +-.++.|.++.....                                   ..|++++-||.....+  +.+......+.+
T Consensus       504 W~~~~~L~V~~~~~~-----------------------------------~~v~~v~vDG~~~~~~--~~~n~~~~v~~v  546 (591)
T PRK13616        504 WRTGDSLVVGRSDPE-----------------------------------HPVWYVNLDGSNSDAL--PSRNLSAPVVAV  546 (591)
T ss_pred             EecCCEEEEEecCCC-----------------------------------CceEEEecCCcccccc--CCCCccCceEEE
Confidence            999999887754331                                   3578899998876553  333333344444


Q ss_pred             EEECCEEEEEeCCC
Q 046107          202 LEFQGNLYLASINS  215 (224)
Q Consensus       202 ~~~~g~lyv~~~~~  215 (224)
                      +-..+.||+++..+
T Consensus       547 aa~~~~iyv~~~~g  560 (591)
T PRK13616        547 AASPSTVYVTDARA  560 (591)
T ss_pred             ecCCceEEEEcCCc
Confidence            44457899887543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.97  E-value=0.02  Score=52.36  Aligned_cols=131  Identities=18%  Similarity=0.166  Sum_probs=84.9

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-CCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+.+||-.|-. .-.+.++..+.--.-+.|+|+..  |++. +..+.|..++...+  ..+++|.. -.+...-+++.++
T Consensus       515 ~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G--~~VRiF~G-H~~~V~al~~Sp~  588 (707)
T KOG0263|consen  515 QTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTG--NSVRIFTG-HKGPVTALAFSPC  588 (707)
T ss_pred             ceeeeeecccC-CchhhhcccccccceEEECCccc--ccccCCCCceEEEEEcCCC--cEEEEecC-CCCceEEEEEcCC
Confidence            45678877753 22334455566667799999875  4544 56677888887642  23566643 2334588999999


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEEEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      |+..++....                                    +.|...| +.|+++..+....+    .++++.+.
T Consensus       589 Gr~LaSg~ed------------------------------------~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS  628 (707)
T KOG0263|consen  589 GRYLASGDED------------------------------------GLIKIWDLANGSLVKQLKGHTG----TIYSLSFS  628 (707)
T ss_pred             CceEeecccC------------------------------------CcEEEEEcCCCcchhhhhcccC----ceeEEEEe
Confidence            9877776655                                    5566666 45677666644433    35555544


Q ss_pred             -CCEEEEEeCCCCeEEEeeC
Q 046107          205 -QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 -~g~lyv~~~~~~~i~~~~~  223 (224)
                       +|++++..-+.+.|...++
T Consensus       629 ~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  629 RDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             cCCCEEEecCCCCeEEEEEc
Confidence             6788888888888776654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0038  Score=49.00  Aligned_cols=66  Identities=23%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             eeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-------------Cccc
Q 046107            4 IHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-------------GLYF   70 (224)
Q Consensus         4 ~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-------------~~~~   70 (224)
                      +.+|.|+...|.+... ||.+|.-..                 .+.++.|++|++|++....+             ....
T Consensus       169 T~~g~pv~~LNELE~V-dG~lyANVw-----------------~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv  230 (262)
T COG3823         169 TDDGVPVSKLNELEWV-DGELYANVW-----------------QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV  230 (262)
T ss_pred             EECCeecccccceeee-ccEEEEeee-----------------eecceEEEcCCCCcEEEEEEccCCchhcCcccccccc
Confidence            4667777777777764 565555432                 24568899999888775532             2346


Q ss_pred             cceeEEecCCCEEEEEe
Q 046107           71 ANGVALSKHGDFVVVCE   87 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~   87 (224)
                      +||||..|+++++|++-
T Consensus       231 lNGIA~~~~~~r~~iTG  247 (262)
T COG3823         231 LNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccceeecCcCCeEEEec
Confidence            89999999998899985

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.93  E-value=0.019  Score=48.74  Aligned_cols=112  Identities=18%  Similarity=0.189  Sum_probs=67.3

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EE--ecCc-------------cccceeE
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IV--LEGL-------------YFANGVA   75 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~--~~~~-------------~~pngia   75 (224)
                      -+++|++.++|.+|+++....           .......|++++.+ |++. .+  ...+             .+..||+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la  153 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA  153 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence            677999988999999985410           01123678999987 5442 22  1111             2234899


Q ss_pred             EecCCCEEEEEeCCC---------------CeEEEEEccCCCcccceEeeccC-------CCCCCceEECCCCCEEEEEe
Q 046107           76 LSKHGDFVVVCESWK---------------FRCIKHWLKLGDKRDREIFIENL-------PGGPDNINLAPDGSFWISLI  133 (224)
Q Consensus        76 ~~~dg~~Lyv~~~~~---------------~~I~~~~~~~~~~~~~~~~~~~~-------~~~p~~i~~d~dG~l~va~~  133 (224)
                      ++|||+.||++.-..               -+|++|++........+..+...       ...+..++.-++|+++|-.-
T Consensus       154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence            999999888776322               36788887531100111122111       13566777888999888765


Q ss_pred             cC
Q 046107          134 KM  135 (224)
Q Consensus       134 ~~  135 (224)
                      ..
T Consensus       234 ~~  235 (326)
T PF13449_consen  234 DF  235 (326)
T ss_pred             cC
Confidence            53

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.93  E-value=0.076  Score=45.69  Aligned_cols=120  Identities=13%  Similarity=0.114  Sum_probs=70.7

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec-cCCC-CCCceEECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE-NLPG-GPDNINLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~-~p~~i~~d~  124 (224)
                      ..|.++.+|.++|+.....+ ......+++.  ++.||+++ ..+.|+.++.+.++    ..|.. ...+ .....++ .
T Consensus       249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG~----~~W~~~~~~~~~~ssp~i-~  319 (377)
T TIGR03300       249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSGS----ELWKNDELKYRQLTAPAV-V  319 (377)
T ss_pred             cCCEEEEEECCCCcEEEeec-cCCccCceEe--CCEEEEEC-CCCeEEEEECCCCc----EEEccccccCCccccCEE-E
Confidence            35788999987776443222 2223344443  45699986 56899999986432    12221 1111 1122233 3


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEE
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALE  203 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~  203 (224)
                      ++.+|+++..                                     +.|+.+|++ |+.+..+..+.+.   ..+..+.
T Consensus       320 g~~l~~~~~~-------------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~  359 (377)
T TIGR03300       320 GGYLVVGDFE-------------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVV  359 (377)
T ss_pred             CCEEEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEE
Confidence            5678887543                                     578888975 9998888654432   1233355


Q ss_pred             ECCEEEEEeCCC
Q 046107          204 FQGNLYLASINS  215 (224)
Q Consensus       204 ~~g~lyv~~~~~  215 (224)
                      .+++||+++..+
T Consensus       360 ~~~~l~v~~~dG  371 (377)
T TIGR03300       360 VGDGLLVQTRDG  371 (377)
T ss_pred             ECCEEEEEeCCc
Confidence            678999998754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=96.92  E-value=0.14  Score=45.33  Aligned_cols=67  Identities=16%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      -...+.++|++||++.+-|. ...++|+.|.+.|..+.+..+.. ...+.+..+++.+||.++++.-..
T Consensus       442 ~~y~~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~  508 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDAS  508 (603)
T ss_pred             cccccceEEEcCCCCEEEEe-cccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccC
Confidence            34557799999999855554 45678999999886543332332 345678999999999988876554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.91  E-value=0.066  Score=46.20  Aligned_cols=134  Identities=16%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             eEEEEeCCCCeEEEEe-------cCccccceeEEec---CCC-EEEEEeCCCCeEEEEEccCC---Ccc--cceEeeccC
Q 046107           50 QLLRYDPSSKQVSIVL-------EGLYFANGVALSK---HGD-FVVVCESWKFRCIKHWLKLG---DKR--DREIFIENL  113 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~-------~~~~~pngia~~~---dg~-~Lyv~~~~~~~I~~~~~~~~---~~~--~~~~~~~~~  113 (224)
                      ++|++|++++.++.+.       +....+.|+|+-.   +|+ ++||.. ..+.+..|.+...   .+.  ..+.|  ..
T Consensus       130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~  206 (381)
T PF02333_consen  130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREF--KV  206 (381)
T ss_dssp             EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEE--E-
T ss_pred             EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEe--cC
Confidence            6899998777776543       3445688999853   455 234444 4578888887521   111  12333  24


Q ss_pred             CCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC--C-cEEEEEeC
Q 046107          114 PGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--G-SIIREFND  189 (224)
Q Consensus       114 ~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G-~~~~~~~~  189 (224)
                      ++.+.|+++|.+ |.||++....                                     .|++++.+  + ..-..+..
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE~~-------------------------------------GIW~y~Aep~~~~~~~~v~~  249 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEEDV-------------------------------------GIWRYDAEPEGGNDRTLVAS  249 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEETTT-------------------------------------EEEEEESSCCC-S--EEEEE
T ss_pred             CCcceEEEEecccCCEEEecCcc-------------------------------------EEEEEecCCCCCCcceeeec
Confidence            568999999976 7899998876                                     47888754  2 22222221


Q ss_pred             CCCCcc-cceeEEEE-----ECCEEEEEeCCCCeEEEeeC
Q 046107          190 PNAKNI-SFVTSALE-----FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       190 ~~g~~~-~~~t~~~~-----~~g~lyv~~~~~~~i~~~~~  223 (224)
                      ..|..+ ..+-.+..     ..|.|.+++=+++...+|+.
T Consensus       250 ~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  250 ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             ccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            222211 22222322     13689999988888888875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=96.88  E-value=0.073  Score=44.65  Aligned_cols=125  Identities=13%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC------------ccccceeEEe-
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG------------LYFANGVALS-   77 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~------------~~~pngia~~-   77 (224)
                      -..|+|..+++|.+.++-.+                 ...|+++++++|++.....+            +.+-+...+- 
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~  206 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLN  206 (299)
T ss_pred             cEeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEec
Confidence            34688888889998877532                 45688888777766544322            2223344444 


Q ss_pred             ---cCCCEEEEEeC---------CCCeEEEEEccCCCcccceEeecc----CCCCCCceEECCCCCEEEEEecCCchhhh
Q 046107           78 ---KHGDFVVVCES---------WKFRCIKHWLKLGDKRDREIFIEN----LPGGPDNINLAPDGSFWISLIKMNSSAVE  141 (224)
Q Consensus        78 ---~dg~~Lyv~~~---------~~~~I~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~dG~l~va~~~~~~~~~~  141 (224)
                         .++..+.+-+.         .+++|+.+++..........+.+.    .....-++-.-++|+++++.+..      
T Consensus       207 ~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~------  280 (299)
T PF14269_consen  207 ESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNN------  280 (299)
T ss_pred             cCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCC------
Confidence               44432233331         456788888763221111112100    11133455556789999987776      


Q ss_pred             hhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe
Q 046107          142 TVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN  188 (224)
Q Consensus       142 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~  188 (224)
                                                    +++.+++++|+++-.+.
T Consensus       281 ------------------------------g~~~E~~~~G~vv~~~~  297 (299)
T PF14269_consen  281 ------------------------------GRISEFTPDGEVVWEAQ  297 (299)
T ss_pred             ------------------------------ceEEEECCCCCEEEEEE
Confidence                                          79999999999887654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.87  E-value=0.17  Score=42.23  Aligned_cols=126  Identities=15%  Similarity=0.217  Sum_probs=79.8

Q ss_pred             ceeEEec--CCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CC--CCCCceEECCCCCEEEEEecCCchhhhhhccC
Q 046107           72 NGVALSK--HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LP--GGPDNINLAPDGSFWISLIKMNSSAVETVHSS  146 (224)
Q Consensus        72 ngia~~~--dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~--~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~  146 (224)
                      .|+|+..  .+++||.++...++|-+|+-.=..+.....|.+. +|  ..|-+|.-- .|+|||+-......-.      
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~------  213 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRN------  213 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCccc------
Confidence            3788774  3679999999999999997541111111223332 22  367787654 5899998654321100      


Q ss_pred             hhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-------ECCEEEEEeCCCCeEE
Q 046107          147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-------FQGNLYLASINSNFIG  219 (224)
Q Consensus       147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-------~~g~lyv~~~~~~~i~  219 (224)
                         .           .   .....++.|-+||.+|++++.+.+. | .+..+=.++.       ..|.|.|++++..+|-
T Consensus       214 ---d-----------~---v~G~G~G~VdvFd~~G~l~~r~as~-g-~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~In  274 (336)
T TIGR03118       214 ---D-----------E---VAGAGLGYVNVFTLNGQLLRRVASS-G-RLNAPWGLAIAPESFGSLSGALLVGNFGDGTIN  274 (336)
T ss_pred             ---c-----------c---ccCCCcceEEEEcCCCcEEEEeccC-C-cccCCceeeeChhhhCCCCCCeEEeecCCceeE
Confidence               0           0   1223348999999999999998653 3 2444433332       2499999999999999


Q ss_pred             EeeC
Q 046107          220 KLPL  223 (224)
Q Consensus       220 ~~~~  223 (224)
                      .++-
T Consensus       275 aFD~  278 (336)
T TIGR03118       275 AYDP  278 (336)
T ss_pred             EecC
Confidence            8873

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.86  E-value=0.0045  Score=51.55  Aligned_cols=60  Identities=27%  Similarity=0.310  Sum_probs=49.1

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      +.+|++.... +|++||+|+.                 .|.|.++|+++|+.+.+..-..+|.|+++.  |+.++|+-+.
T Consensus       202 LsmPhSPRWh-dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk  261 (335)
T TIGR03032       202 LSMPHSPRWY-QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK  261 (335)
T ss_pred             ccCCcCCcEe-CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence            5666666664 7889999854                 789999999888999888888899999998  8878887653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.82  E-value=0.058  Score=44.89  Aligned_cols=67  Identities=16%  Similarity=0.043  Sum_probs=44.5

Q ss_pred             ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCC-Ccccc---eEeecc-----CCCCCCceEECCCCCEEEEE
Q 046107           65 LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLG-DKRDR---EIFIEN-----LPGGPDNINLAPDGSFWISL  132 (224)
Q Consensus        65 ~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~---~~~~~~-----~~~~p~~i~~d~dG~l~va~  132 (224)
                      ...+..|+||+++|.+ .+||++..++....|+.+.. ..+..   .+-+..     .++.|.|+++..-..+-|..
T Consensus        19 Dp~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~   94 (336)
T TIGR03118        19 DPGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG   94 (336)
T ss_pred             CccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence            3467899999999977 69999999999999998621 11111   111111     12479999998654444444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.81  E-value=0.047  Score=46.20  Aligned_cols=79  Identities=20%  Similarity=0.262  Sum_probs=48.2

Q ss_pred             cceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE--EEec------CccccceeEEecCCCEEE
Q 046107           14 NDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS--IVLE------GLYFANGVALSKHGDFVV   84 (224)
Q Consensus        14 n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~--~~~~------~~~~pngia~~~dg~~Ly   84 (224)
                      -.+++.+|| .+|+++..  |.+.      ..+..+--|-.+|.++-+.+  +.+.      ...+++-++++.||+++|
T Consensus        39 ~~~~~spdgk~~y~a~T~--~sR~------~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~  110 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETF--YSRG------TRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLY  110 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEE--EEET------TEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEE
T ss_pred             CceeECCCCCEEEEEEEE--Eecc------ccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEE
Confidence            346778887 47776543  2111      01122345777888754322  2322      235567899999999999


Q ss_pred             EEe-CCCCeEEEEEccC
Q 046107           85 VCE-SWKFRCIKHWLKL  100 (224)
Q Consensus        85 v~~-~~~~~I~~~~~~~  100 (224)
                      |.+ +....|..+|+..
T Consensus       111 V~N~TPa~SVtVVDl~~  127 (342)
T PF06433_consen  111 VQNFTPATSVTVVDLAA  127 (342)
T ss_dssp             EEEESSSEEEEEEETTT
T ss_pred             EEccCCCCeEEEEECCC
Confidence            999 7788999999975

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PTZ00420 coronin; Provisional

Probab=96.79  E-value=0.3  Score=44.67  Aligned_cols=53  Identities=4%  Similarity=-0.118  Sum_probs=36.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .++.|..+|..+++.............++|++||+ ++++....+.|..|++..
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK  198 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC
Confidence            35777778876554332222334467899999998 556666678899999864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.73  E-value=0.21  Score=42.32  Aligned_cols=132  Identities=15%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             ceEEEEeCCCCeEEEEec---Cccccce-eEEecCCC--EE-EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107           49 GQLLRYDPSSKQVSIVLE---GLYFANG-VALSKHGD--FV-VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN  121 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~---~~~~png-ia~~~dg~--~L-yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~  121 (224)
                      ..+|.+|.+.  .+.+.+   -...|.| +|+++...  +| |=.++..+.|+.|+...  +.....+ .--.+..--++
T Consensus       106 e~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I-~aH~~~lAala  180 (391)
T KOG2110|consen  106 ESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTI-NAHKGPLAALA  180 (391)
T ss_pred             ccEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEE-EecCCceeEEE
Confidence            4588888763  333322   2244555 35666443  44 33346678999999754  2222222 11124567899


Q ss_pred             ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC--CCCcEEEEEeCCCCCccccee
Q 046107          122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS--ANGSIIREFNDPNAKNISFVT  199 (224)
Q Consensus       122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~G~~~~~~~~~~g~~~~~~t  199 (224)
                      ++++|.+..+....                                    |.|+|+=  ++|+.+..+.  +|.....+.
T Consensus       181 fs~~G~llATASeK------------------------------------GTVIRVf~v~~G~kl~eFR--RG~~~~~Iy  222 (391)
T KOG2110|consen  181 FSPDGTLLATASEK------------------------------------GTVIRVFSVPEGQKLYEFR--RGTYPVSIY  222 (391)
T ss_pred             ECCCCCEEEEeccC------------------------------------ceEEEEEEcCCccEeeeee--CCceeeEEE
Confidence            99999999998887                                    5666654  7898877773  465445566


Q ss_pred             EEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          200 SALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       200 ~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      +++++ +..+..++.....|.+|+|
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEe
Confidence            77776 4555555666777877765

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=96.72  E-value=0.0062  Score=35.29  Aligned_cols=40  Identities=13%  Similarity=-0.007  Sum_probs=31.8

Q ss_pred             EEEEEeCCCC-eEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107           82 FVVVCESWKF-RCIKHWLKLGDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        82 ~Lyv~~~~~~-~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      .||++|...+ +|.+.+++|.   ..++++...-..|.||++|+
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGS---NRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTST---SEEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCC---CeEEEEECCCCCcCEEEECC
Confidence            5999999999 9999999983   34555544456899999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.64  E-value=0.075  Score=41.59  Aligned_cols=99  Identities=16%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--   89 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--   89 (224)
                      .++++..|+|+ +.+....                ....+.-+|.+...+..+  +....|.|.++|+|++|.++...  
T Consensus        62 I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~  123 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNL  123 (194)
T ss_pred             eEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCC
Confidence            56888888885 4444211                122455566542222222  23456889999999988887643  


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~  134 (224)
                      .+.|..++.+.     .+.+..........++++|+|+.+++...
T Consensus       124 ~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  124 NGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             CcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence            46788898863     22333222334689999999998887654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.60  E-value=0.16  Score=43.76  Aligned_cols=124  Identities=15%  Similarity=0.205  Sum_probs=70.1

Q ss_pred             CCceEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCCCCeEEEEEcc-CCCcccceEeeccCCC--CCCce
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG---LYFANGVALSKHGDFVVVCESWKFRCIKHWLK-LGDKRDREIFIENLPG--GPDNI  120 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~---~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~-~~~~~~~~~~~~~~~~--~p~~i  120 (224)
                      .+|.|+-+|+++++...-...   ....++-.+..||+ ||+++... .++.++.+ |.     .+|....++  .-.+-
T Consensus        76 ~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g-~~y~ld~~~G~-----~~W~~~~~~~~~~~~~  148 (370)
T COG1520          76 RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDG-KLYALDASTGT-----LVWSRNVGGSPYYASP  148 (370)
T ss_pred             CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccc-eEEEEECCCCc-----EEEEEecCCCeEEecC
Confidence            356888999887664321111   23444433444886 99998765 89999984 42     233222222  11233


Q ss_pred             EECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCccccee
Q 046107          121 NLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVT  199 (224)
Q Consensus       121 ~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t  199 (224)
                      ++-.+|.+|+.. ..                                    +.++.++++ |+....+..+.+.......
T Consensus       149 ~v~~~~~v~~~s-~~------------------------------------g~~~al~~~tG~~~W~~~~~~~~~~~~~~  191 (370)
T COG1520         149 PVVGDGTVYVGT-DD------------------------------------GHLYALNADTGTLKWTYETPAPLSLSIYG  191 (370)
T ss_pred             cEEcCcEEEEec-CC------------------------------------CeEEEEEccCCcEEEEEecCCcccccccc
Confidence            444678888876 22                                    578899987 8887665443210011111


Q ss_pred             EEEEECCEEEEEeCC
Q 046107          200 SALEFQGNLYLASIN  214 (224)
Q Consensus       200 ~~~~~~g~lyv~~~~  214 (224)
                      .....++.+|+++..
T Consensus       192 ~~~~~~~~vy~~~~~  206 (370)
T COG1520         192 SPAIASGTVYVGSDG  206 (370)
T ss_pred             CceeecceEEEecCC
Confidence            112567888888763

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.58  E-value=0.027  Score=50.39  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             ceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-Cc-cccceeEEecCCCEEEEEeCCCCe
Q 046107           15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-GL-YFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        15 ~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~~-~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      .+..|.+|++|+...                  +| ++++|+.+++.-.... .. +..|.+..+-.|+ |||...  ..
T Consensus       169 aLv~D~~g~lWvgT~------------------dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTd--qG  226 (671)
T COG3292         169 ALVFDANGRLWVGTP------------------DG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTD--QG  226 (671)
T ss_pred             eeeeeccCcEEEecC------------------Cc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEec--cc
Confidence            456677888888752                  33 8888987666554432 23 4456778888886 999964  46


Q ss_pred             EEEEEccCCCcccceEeeccCC-CCCCceEECCCCCEEEEEecC
Q 046107           93 CIKHWLKLGDKRDREIFIENLP-GGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~dG~l~va~~~~  135 (224)
                      |+.++..|-..   .-+....| +...-+.-|.+|++|++...+
T Consensus       227 v~~~e~~G~~~---sn~~~~lp~~~I~ll~qD~qG~lWiGTenG  267 (671)
T COG3292         227 VYLQEAEGWRA---SNWGPMLPSGNILLLVQDAQGELWIGTENG  267 (671)
T ss_pred             eEEEchhhccc---cccCCCCcchheeeeecccCCCEEEeeccc
Confidence            77777765211   11111111 233455668899999998765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.50  E-value=0.13  Score=44.43  Aligned_cols=125  Identities=11%  Similarity=0.040  Sum_probs=63.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCccc-cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCC-C-CceEEC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYF-ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGG-P-DNINLA  123 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~-pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~-p-~~i~~d  123 (224)
                      +...+|.+|.++++.+++.++... .-|..++++.+.||... ....|+++++++.   +.+++++..... . ....++
T Consensus        58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~---e~~~vy~~p~~~~g~gt~v~n  133 (386)
T PF14583_consen   58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL---EERVVYEVPDDWKGYGTWVAN  133 (386)
T ss_dssp             SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-
T ss_pred             CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC---cEEEEEECCcccccccceeeC
Confidence            456799999998999988765433 33788899888885443 3468999999762   233444322211 1 234457


Q ss_pred             CCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeC
Q 046107          124 PDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFND  189 (224)
Q Consensus       124 ~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~  189 (224)
                      +|+..+++....+. .......+...+++...           .+  +.+|+++|-+ |+...++.+
T Consensus       134 ~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~a-----------~p--~~~i~~idl~tG~~~~v~~~  186 (386)
T PF14583_consen  134 SDCTKLVGIEISRE-DWKPLTKWKGFREFYEA-----------RP--HCRIFTIDLKTGERKVVFED  186 (386)
T ss_dssp             TTSSEEEEEEEEGG-G-----SHHHHHHHHHC----------------EEEEEEETTT--EEEEEEE
T ss_pred             CCccEEEEEEEeeh-hccCccccHHHHHHHhh-----------CC--CceEEEEECCCCceeEEEec
Confidence            88998888754321 00111112223333222           22  2899999965 666555544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.47  E-value=0.016  Score=33.00  Aligned_cols=42  Identities=12%  Similarity=-0.031  Sum_probs=29.6

Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEEC
Q 046107           78 KHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLA  123 (224)
Q Consensus        78 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  123 (224)
                      ||+++|||++...+.|..+++....  ....+  .....|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~i--~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK--VIATI--PVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe--EEEEE--ECCCCCceEEeC
Confidence            6788999999999999999985421  11111  124579998874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.43  E-value=0.28  Score=42.13  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=31.2

Q ss_pred             CceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           48 HGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .|.|+.+|..+|+...-.. ......+++++  ++.+||.. ..+.++.++.+.
T Consensus        74 ~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--~~~v~v~~-~~g~l~ald~~t  124 (377)
T TIGR03300        74 DGTVVALDAETGKRLWRVDLDERLSGGVGAD--GGLVFVGT-EKGEVIALDAED  124 (377)
T ss_pred             CCeEEEEEccCCcEeeeecCCCCcccceEEc--CCEEEEEc-CCCEEEEEECCC
Confidence            5789999987776543211 11222345554  45689876 457999999853

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=96.40  E-value=0.4  Score=38.88  Aligned_cols=105  Identities=14%  Similarity=0.100  Sum_probs=66.7

Q ss_pred             cccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeE--EEEecCccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV--SIVLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~--~~~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..|.|...|+ +.|+++|.                  .|.|+.+|......  +.+.+....-..+++.|||+ ..++-.
T Consensus       126 pVn~vvlhpnQteLis~dq------------------sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~n  186 (311)
T KOG0315|consen  126 PVNTVVLHPNQTELISGDQ------------------SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAAN  186 (311)
T ss_pred             CcceEEecCCcceEEeecC------------------CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEec
Confidence            3467777774 56777763                  47788888753322  22345566667999999998 556666


Q ss_pred             CCCeEEEEEccCC-CcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLG-DKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~-~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +++..+.+++-++ .....+.....  -.++.--..+.||+.+.++....
T Consensus       187 nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  187 NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            7888888887542 11222221111  12456677788999888877665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=96.38  E-value=0.5  Score=42.03  Aligned_cols=72  Identities=21%  Similarity=0.123  Sum_probs=50.2

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec---C-ccccceeEEecCCCEEEEE
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE---G-LYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~---~-~~~pngia~~~dg~~Lyv~   86 (224)
                      ++.|+|...|||+.|.|..+                 +|.++.||..+|+..-..+   . .....+|+|+||++++ ++
T Consensus       191 kFV~~VRysPDG~~Fat~gs-----------------Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~-~T  252 (603)
T KOG0318|consen  191 KFVNCVRYSPDGSRFATAGS-----------------DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF-LT  252 (603)
T ss_pred             cceeeEEECCCCCeEEEecC-----------------CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE-EE
Confidence            46789999999999999743                 7899999987665432222   1 2334689999999854 55


Q ss_pred             eCCCCeEEEEEccC
Q 046107           87 ESWKFRCIKHWLKL  100 (224)
Q Consensus        87 ~~~~~~I~~~~~~~  100 (224)
                      .+....+..++...
T Consensus       253 ~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  253 VSADKTIKIWDVST  266 (603)
T ss_pred             ecCCceEEEEEeec
Confidence            55555666666643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.33  Score=40.26  Aligned_cols=64  Identities=13%  Similarity=-0.007  Sum_probs=42.1

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEc-cCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWL-KLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~-~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...-+.|.++|||+.|.++.. .+.++.++. +|..   ...|...  ....|-..++.|||.+.++..+.
T Consensus       187 ~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d  253 (311)
T KOG1446|consen  187 EAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTV---KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD  253 (311)
T ss_pred             ccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcE---eeeEeeccCCCCcceeEEECCCCcEEEEecCC
Confidence            444568999999998888875 456777775 3421   1222211  11246677888999988888776

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.30  E-value=0.36  Score=41.91  Aligned_cols=128  Identities=12%  Similarity=0.116  Sum_probs=65.2

Q ss_pred             CceEEEEeCCCCeEEEEecCcc------------ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLY------------FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG  115 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~------------~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~  115 (224)
                      .|.|+.+|.++|+...-.+-..            ...+++++  ++.+|+.. ..+.++.++.+.++.    .|....++
T Consensus        78 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~v~v~~-~~g~l~ald~~tG~~----~W~~~~~~  150 (394)
T PRK11138         78 AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GGKVYIGS-EKGQVYALNAEDGEV----AWQTKVAG  150 (394)
T ss_pred             CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CCEEEEEc-CCCEEEEEECCCCCC----cccccCCC
Confidence            4678888887676432211110            01234554  34699886 457899999864321    33211121


Q ss_pred             CC-CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCC
Q 046107          116 GP-DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAK  193 (224)
Q Consensus       116 ~p-~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~  193 (224)
                      .. ....+ .+|.+|+....                                     +.++.+|+ +|+.+..+......
T Consensus       151 ~~~ssP~v-~~~~v~v~~~~-------------------------------------g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        151 EALSRPVV-SDGLVLVHTSN-------------------------------------GMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             ceecCCEE-ECCEEEEECCC-------------------------------------CEEEEEEccCCCEeeeecCCCCc
Confidence            11 11123 25778876433                                     47888996 58887766432110


Q ss_pred             -cccceeEEEEECCEEEEEeCCCCeEEEe
Q 046107          194 -NISFVTSALEFQGNLYLASINSNFIGKL  221 (224)
Q Consensus       194 -~~~~~t~~~~~~g~lyv~~~~~~~i~~~  221 (224)
                       .....+..+..++.+|+++.. ..+..+
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~-g~v~a~  220 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDN-GRVSAV  220 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCC-CEEEEE
Confidence             000111223345677776643 344443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.28  E-value=0.065  Score=46.76  Aligned_cols=62  Identities=15%  Similarity=0.064  Sum_probs=46.3

Q ss_pred             eeEEecCCCEEEEEeCCCCeEEEEEccCCC-cccceEeecc-CCCCCCceEECCCCCEEEEEecC
Q 046107           73 GVALSKHGDFVVVCESWKFRCIKHWLKLGD-KRDREIFIEN-LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .|+++|+++ .+++.+..++|+.|...... ....+.|-.. .+|++-.+.+.+||.+.++....
T Consensus       390 ~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd  453 (503)
T KOG0282|consen  390 CLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD  453 (503)
T ss_pred             ceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence            588999998 88999999999999875432 2223333221 56899999999999988876665

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.24  E-value=0.16  Score=41.91  Aligned_cols=171  Identities=17%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             CCceEEEEeCCCCeEEEE---ecCccccceeEEecCCCEEEEEeCC--CC-eEEEEEccCCCcccceEeec---------
Q 046107           47 PHGQLLRYDPSSKQVSIV---LEGLYFANGVALSKHGDFVVVCESW--KF-RCIKHWLKLGDKRDREIFIE---------  111 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~---~~~~~~pngia~~~dg~~Lyv~~~~--~~-~I~~~~~~~~~~~~~~~~~~---------  111 (224)
                      ..|.|-.||...+ ...+   .+-.-+|+-+.+.+||+.|.|++..  ++ .--|..++=......-++.+         
T Consensus       138 ~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek  216 (366)
T COG3490         138 NRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK  216 (366)
T ss_pred             CCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh
Confidence            4667777776532 2222   3345678899999999988888641  11 00111111000000111111         


Q ss_pred             -cCC-----CCCCceEECCCCCEEEEEecCCc--hhhhhhccChhHHHHHhh--chh-----hHHhhhh-cCCCceEEEE
Q 046107          112 -NLP-----GGPDNINLAPDGSFWISLIKMNS--SAVETVHSSKNRKQLLEE--HPE-----LINQLMS-TGKGAAAKVV  175 (224)
Q Consensus       112 -~~~-----~~p~~i~~d~dG~l~va~~~~~~--~~~~~~~~~p~~~~~~~~--~~~-----~~~~~~~-~~~~~~~~v~  175 (224)
                       .+|     -+...+++++||++|++..+...  -...++...-..++ ++-  +|.     +.+.+.+ ..++..+.|.
T Consensus       217 h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~-l~~~~~pee~~~~~anYigsiA~n~~~glV~  295 (366)
T COG3490         217 HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP-LEFLDLPEEQTAAFANYIGSIAANRRDGLVA  295 (366)
T ss_pred             ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc-CcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence             012     14588999999999999876431  11111111000000 000  110     1111212 2233346777


Q ss_pred             EECCCCcEEEEEeCCCCCcccceeEE--E--EECCEEEEEeCCCCeEE
Q 046107          176 KVSANGSIIREFNDPNAKNISFVTSA--L--EFQGNLYLASINSNFIG  219 (224)
Q Consensus       176 ~~~~~G~~~~~~~~~~g~~~~~~t~~--~--~~~g~lyv~~~~~~~i~  219 (224)
                      .-+|.|.....+....|.++......  +  .....=|+.+....+|-
T Consensus       296 lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~  343 (366)
T COG3490         296 LTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRII  343 (366)
T ss_pred             EecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEE
Confidence            77888888888877777755433221  1  22344444444444443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=96.22  E-value=0.21  Score=43.13  Aligned_cols=103  Identities=18%  Similarity=0.205  Sum_probs=68.3

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~   88 (224)
                      -....++++.+||.+..|-..               -..|+||  |..+|...++..+ .+...+++|+|+| +...+.+
T Consensus       303 s~~v~~iaf~~DGSL~~tGGl---------------D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs  364 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGL---------------DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGS  364 (459)
T ss_pred             ccccceeEecCCCceeeccCc---------------cchhhee--ecccCcEEEEecccccceeeEeECCCc-eEEeecC
Confidence            345568999999999888421               1245665  4445666665544 5566799999998 5777877


Q ss_pred             CCCeEEEEEccCCCcccceEeeccC--CCCCCceEECC-CCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENL--PGGPDNINLAP-DGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~-dG~l~va~~~~  135 (224)
                      ..+.+-.+|+..-.     .+...+  ......+.+.+ .|.+.++..+.
T Consensus       365 ~Dnt~kVWDLR~r~-----~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRS-----ELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             CCCcEEEeeecccc-----cceecccccchhhheEecccCCeEEEEcccC
Confidence            78877778776421     122111  12457888887 57788887777

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.18  E-value=0.13  Score=45.34  Aligned_cols=82  Identities=18%  Similarity=0.090  Sum_probs=50.5

Q ss_pred             ceEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+++.++.++++...+.+ ..+.+ ..+|+|||++|.++....  ..|+.+++++..   ...+. ...+.-..-.+.||
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~Lt-~~~gi~~~Ps~spd  292 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPRLT-NGFGINTSPSWSPD  292 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---ceecc-cCCccccCccCCCC
Confidence            568888887776665554 33333 578999999997776443  468888887643   11222 23333345567788


Q ss_pred             CC--EEEEEecC
Q 046107          126 GS--FWISLIKM  135 (224)
Q Consensus       126 G~--l~va~~~~  135 (224)
                      |+  +|+++-.+
T Consensus       293 G~~ivf~Sdr~G  304 (425)
T COG0823         293 GSKIVFTSDRGG  304 (425)
T ss_pred             CCEEEEEeCCCC
Confidence            87  44444333

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.15  E-value=0.18  Score=42.31  Aligned_cols=116  Identities=11%  Similarity=-0.042  Sum_probs=72.8

Q ss_pred             cCccccceeEEecCCCEEEEEeCCCCeEEEEEcc--CCCcccceEeecc---CCCCCCceEECCCC-CEEEEEecCCchh
Q 046107           66 EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLK--LGDKRDREIFIEN---LPGGPDNINLAPDG-SFWISLIKMNSSA  139 (224)
Q Consensus        66 ~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~~---~~~~p~~i~~d~dG-~l~va~~~~~~~~  139 (224)
                      +.......++|+|||..||...  +++|.+|++.  |-.-....++..+   ..+....+++.|-. ..+....+.+   
T Consensus       156 de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---  230 (406)
T KOG2919|consen  156 DEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---  230 (406)
T ss_pred             HhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc---
Confidence            3456678999999999888774  6799999984  2111111112111   22344566666643 3555555541   


Q ss_pred             hhhhccChhHHHHHhhchhhHHhhhhcCCCceEEE-EEECCCCcEEEEEeCCCCCcccceeEEE--EECCEEEEEeCCCC
Q 046107          140 VETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKV-VKVSANGSIIREFNDPNAKNISFVTSAL--EFQGNLYLASINSN  216 (224)
Q Consensus       140 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~G~~~~~~~~~~g~~~~~~t~~~--~~~g~lyv~~~~~~  216 (224)
                                                       ++ ++-+-++.++..+....|    ++|.+.  +++++||.+....+
T Consensus       231 ---------------------------------~~giy~~~~~~pl~llggh~g----GvThL~~~edGn~lfsGaRk~d  273 (406)
T KOG2919|consen  231 ---------------------------------RVGIYNDDGRRPLQLLGGHGG----GVTHLQWCEDGNKLFSGARKDD  273 (406)
T ss_pred             ---------------------------------eeeeEecCCCCceeeecccCC----CeeeEEeccCcCeecccccCCC
Confidence                                             22 233445678888765544    477765  67899999999999


Q ss_pred             eEEEeeC
Q 046107          217 FIGKLPL  223 (224)
Q Consensus       217 ~i~~~~~  223 (224)
                      .|..-++
T Consensus       274 kIl~WDi  280 (406)
T KOG2919|consen  274 KILCWDI  280 (406)
T ss_pred             eEEEEee
Confidence            9987664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.11  E-value=0.22  Score=43.01  Aligned_cols=108  Identities=10%  Similarity=0.039  Sum_probs=61.6

Q ss_pred             ecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCcccc-ceeEEecCCCEEEEEeCCCCeEEE
Q 046107           19 ASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFA-NGVALSKHGDFVVVCESWKFRCIK   95 (224)
Q Consensus        19 ~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~   95 (224)
                      +....+||...+    -++..........+..+|.+.++ ++.+...  .+...| --|.||||.++| ++......+..
T Consensus       222 ~htdEVWfl~FS----~nGkyLAsaSkD~Taiiw~v~~d-~~~kl~~tlvgh~~~V~yi~wSPDdryL-laCg~~e~~~l  295 (519)
T KOG0293|consen  222 DHTDEVWFLQFS----HNGKYLASASKDSTAIIWIVVYD-VHFKLKKTLVGHSQPVSYIMWSPDDRYL-LACGFDEVLSL  295 (519)
T ss_pred             hCCCcEEEEEEc----CCCeeEeeccCCceEEEEEEecC-cceeeeeeeecccCceEEEEECCCCCeE-EecCchHheee
Confidence            344567777633    22222222223345668888887 4444433  234444 468999999855 55556667888


Q ss_pred             EEccCCCcccceEeec-cCCCCCCceEECCCCCEEEEEecC
Q 046107           96 HWLKLGDKRDREIFIE-NLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        96 ~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ++.+.+   +....+. +..-.+...++-|||.=+|+....
T Consensus       296 wDv~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d  333 (519)
T KOG0293|consen  296 WDVDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD  333 (519)
T ss_pred             ccCCcc---hhhhhcccCcCCCcceeEEccCCceeEecCCC
Confidence            887642   2222211 112356777788888777776665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.04  E-value=0.18  Score=42.84  Aligned_cols=98  Identities=20%  Similarity=0.273  Sum_probs=60.5

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      .....+...+||..++|-+.                .+..+..+|++++....+. .++.+-.-+.+||||+.||.+...
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d  259 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD  259 (445)
T ss_pred             ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence            34445555666777776432                4567888888877655554 455555678999999977766542


Q ss_pred             CCeEEEEE-ccCCCcccceEeeccCCCCCCceEECCCCCEE
Q 046107           90 KFRCIKHW-LKLGDKRDREIFIENLPGGPDNINLAPDGSFW  129 (224)
Q Consensus        90 ~~~I~~~~-~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~  129 (224)
                        .+.++. ...  ..+.+.+.- ..++..+-+++++|...
T Consensus       260 --avfrlw~e~q--~wt~erw~l-gsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  260 --AVFRLWQENQ--SWTKERWIL-GSGRVQTACWSPCGSFL  295 (445)
T ss_pred             --ceeeeehhcc--cceecceec-cCCceeeeeecCCCCEE
Confidence              445554 322  122333432 34578889999999833

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.04  E-value=0.08  Score=46.23  Aligned_cols=135  Identities=16%  Similarity=0.143  Sum_probs=91.6

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec--cCCCCCCceEECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE--NLPGGPDNINLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~  124 (224)
                      -+..|--+|..+|++..-...-..|+-+.+.||+..+|++-...++|..+|+..++     ++.+  ..-+....+.+=+
T Consensus       278 fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----vvqeYd~hLg~i~~i~F~~  352 (503)
T KOG0282|consen  278 FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----VVQEYDRHLGAILDITFVD  352 (503)
T ss_pred             cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----HHHHHHhhhhheeeeEEcc
Confidence            35666677888888887777788899999999996699999999999999997422     2211  1224567888888


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      +|.-+++.....+                                  -+|+.++ -+..++.+.++.-  .+.++.....
T Consensus       353 ~g~rFissSDdks----------------------------------~riWe~~-~~v~ik~i~~~~~--hsmP~~~~~P  395 (503)
T KOG0282|consen  353 EGRRFISSSDDKS----------------------------------VRIWENR-IPVPIKNIADPEM--HTMPCLTLHP  395 (503)
T ss_pred             CCceEeeeccCcc----------------------------------EEEEEcC-CCccchhhcchhh--ccCcceecCC
Confidence            8998888777621                                  2334333 2333344434321  2344444445


Q ss_pred             CCEEEEEeCCCCeEEEeeC
Q 046107          205 QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~~  223 (224)
                      .+..+.+....|+|+.+.+
T Consensus       396 ~~~~~~aQs~dN~i~ifs~  414 (503)
T KOG0282|consen  396 NGKWFAAQSMDNYIAIFST  414 (503)
T ss_pred             CCCeehhhccCceEEEEec
Confidence            7888888888899888764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.00  E-value=0.75  Score=40.28  Aligned_cols=86  Identities=8%  Similarity=-0.014  Sum_probs=48.6

Q ss_pred             CceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .-+||++|.+.+..-+-+.-..+| .-.++.|+|....++.+-+.-.+.||+...+..............-..+.+.+++
T Consensus       236 ~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~  315 (514)
T KOG2055|consen  236 TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS  315 (514)
T ss_pred             cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCC
Confidence            446888886533211112233455 3678899998566666666779999986533322222111111234678888998


Q ss_pred             CEEEEEe
Q 046107          127 SFWISLI  133 (224)
Q Consensus       127 ~l~va~~  133 (224)
                      ++.+-.+
T Consensus       316 ~fia~~G  322 (514)
T KOG2055|consen  316 NFIAIAG  322 (514)
T ss_pred             CeEEEcc
Confidence            8444433

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.97  E-value=0.042  Score=31.72  Aligned_cols=41  Identities=20%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-EecCccccceeEEec
Q 046107           22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-VLEGLYFANGVALSK   78 (224)
Q Consensus        22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~   78 (224)
                      |+||+||...                ...+.+.+.++...+. +.+++..|+|||+++
T Consensus         1 ~~iYWtD~~~----------------~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQ----------------DPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTT----------------TEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCC----------------CcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            5799999651                1378888877544444 467899999999975

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PTZ00421 coronin; Provisional

Probab=95.89  E-value=1.3  Score=39.99  Aligned_cols=84  Identities=10%  Similarity=-0.049  Sum_probs=49.1

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .++.|..+|..+++....... ....+.++|+|||+ ++++....+.|..|++..+..  ...+..........+.+.++
T Consensus       146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcCC
Confidence            367787888765554333333 34467999999998 666667788999999864221  11111111112234556666


Q ss_pred             CCEEEEEe
Q 046107          126 GSFWISLI  133 (224)
Q Consensus       126 G~l~va~~  133 (224)
                      +...++.+
T Consensus       223 ~~~ivt~G  230 (493)
T PTZ00421        223 KDLIITLG  230 (493)
T ss_pred             CCeEEEEe
Confidence            66555543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=95.79  E-value=0.91  Score=37.62  Aligned_cols=85  Identities=14%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             CceEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~d  125 (224)
                      +..-..+|...+...+ +.....-.|.++|.|+|. -|++-+..+....||+..+  .+..++... .-.....+++...
T Consensus       208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             ccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCC--cEEeeeccCcccCCceeEEEccc
Confidence            3444445544344333 344456679999999996 8999999999999998642  223343321 1124588999999


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      |++.++....
T Consensus       285 GRlLfagy~d  294 (343)
T KOG0286|consen  285 GRLLFAGYDD  294 (343)
T ss_pred             ccEEEeeecC
Confidence            9998887555

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.65  E-value=0.22  Score=45.58  Aligned_cols=77  Identities=21%  Similarity=0.109  Sum_probs=52.6

Q ss_pred             ceeeeccccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecC
Q 046107            2 IKIHLCHLIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKH   79 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~d   79 (224)
                      .++.........+++++.|||. +.++-                   ..+|+.+|++.|..-.. .....--+-+|++.|
T Consensus         4 ~~~~r~~~~hci~d~afkPDGsqL~lAA-------------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~d   64 (1081)
T KOG1538|consen    4 VLTWRDKAEHCINDIAFKPDGTQLILAA-------------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD   64 (1081)
T ss_pred             hhhhhcccccchheeEECCCCceEEEec-------------------CCEEEEEeCCCcccccccccccceEEEEEEccC
Confidence            4555555667899999999995 55552                   35799999875644333 333445678999999


Q ss_pred             CCEEEEEeCCCCeEEEEEc
Q 046107           80 GDFVVVCESWKFRCIKHWL   98 (224)
Q Consensus        80 g~~Lyv~~~~~~~I~~~~~   98 (224)
                      |+ .|.+-.....|..+..
T Consensus        65 Gk-rFASG~aDK~VI~W~~   82 (1081)
T KOG1538|consen   65 GK-RFASGSADKSVIIWTS   82 (1081)
T ss_pred             Cc-eeccCCCceeEEEecc
Confidence            97 7777666555555554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.62  E-value=0.17  Score=44.16  Aligned_cols=84  Identities=8%  Similarity=0.070  Sum_probs=49.4

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                      .|.|..+...++++-.-..--....+++|+.|++.||++.. .++||.+++...  .-...|.+...-+-..++...+|.
T Consensus       324 ~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~  400 (514)
T KOG2055|consen  324 NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS  400 (514)
T ss_pred             CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc
Confidence            45666666544432111112233458899999997877764 569999999642  223445543222446677778888


Q ss_pred             EEEEEecC
Q 046107          128 FWISLIKM  135 (224)
Q Consensus       128 l~va~~~~  135 (224)
                       |+|.+..
T Consensus       401 -ylA~GS~  407 (514)
T KOG2055|consen  401 -YLATGSD  407 (514)
T ss_pred             -eEEeccC
Confidence             5555444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=95.56  E-value=0.14  Score=42.76  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=64.6

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI---VLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~---~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..|++.+.|...|..+-                 ..++.|--+|.++..++.   +.++......|.++|.|.+|.|.. 
T Consensus       174 evn~l~FHPre~ILiS~-----------------srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-  235 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISG-----------------SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-  235 (430)
T ss_pred             cccceeecchhheEEec-----------------cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence            45677777776776664                 346667677765332222   123444456899999999887764 


Q ss_pred             CCCeEEEEEccCCCcccceEeecc-----CCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ....+..|++++     .+.|..-     -.+....+...+.|++|++....
T Consensus       236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD  282 (430)
T KOG0640|consen  236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD  282 (430)
T ss_pred             CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEeccC
Confidence            556677788764     2344321     12345677788999999998876

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.44  E-value=0.93  Score=40.70  Aligned_cols=122  Identities=13%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-----------------CCCCeEEEEEccCCCcccceE
Q 046107           46 EPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE-----------------SWKFRCIKHWLKLGDKRDREI  108 (224)
Q Consensus        46 ~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~-----------------~~~~~I~~~~~~~~~~~~~~~  108 (224)
                      ...|.|+.+|.++|+...-.+..  -.+++.+|  +.+|+..                 ...++|+.+++.+++    .+
T Consensus       308 ~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~----~~  379 (488)
T cd00216         308 PKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK----VV  379 (488)
T ss_pred             CCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc----Ee
Confidence            34788999999878644221111  23466666  4588853                 135688888886432    23


Q ss_pred             eeccCC--------CCC--Cc-eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEE
Q 046107          109 FIENLP--------GGP--DN-INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKV  177 (224)
Q Consensus       109 ~~~~~~--------~~p--~~-i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  177 (224)
                      |.....        +.|  .+ +++ .++.+|+++..                                     +.++.+
T Consensus       380 W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~d-------------------------------------G~l~al  421 (488)
T cd00216         380 WEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAAD-------------------------------------GYFRAF  421 (488)
T ss_pred             eEeeCCccccccccCCcccCcceEe-cCCeEEEECCC-------------------------------------CeEEEE
Confidence            332111        011  12 333 45678887643                                     578999


Q ss_pred             CC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCC
Q 046107          178 SA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASINS  215 (224)
Q Consensus       178 ~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~  215 (224)
                      |. +|+++..++.+.+. ...+ .+...+|++|++...+
T Consensus       422 d~~tG~~lW~~~~~~~~-~a~P-~~~~~~g~~yv~~~~g  458 (488)
T cd00216         422 DATTGKELWKFRTPSGI-QATP-MTYEVNGKQYVGVMVG  458 (488)
T ss_pred             ECCCCceeeEEECCCCc-eEcC-EEEEeCCEEEEEEEec
Confidence            96 49998888765432 1222 2224588999998665

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.37  E-value=1.2  Score=39.90  Aligned_cols=51  Identities=20%  Similarity=0.100  Sum_probs=29.6

Q ss_pred             CceEEEEeCCCCeEEEEecC-cc--------ccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           48 HGQLLRYDPSSKQVSIVLEG-LY--------FANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~-~~--------~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .+.|+.+|..+|+.....+. ..        ...++++..++ .+|+... .+.|+.++.+.
T Consensus        70 ~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~-~V~v~~~-~g~v~AlD~~T  129 (488)
T cd00216          70 HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR-KVFFGTF-DGRLVALDAET  129 (488)
T ss_pred             CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC-eEEEecC-CCeEEEEECCC
Confidence            47788888876754322111 10        11244443223 5888864 67899999864

The alignment model contains an 8-bladed beta-propeller.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.35  E-value=0.81  Score=39.27  Aligned_cols=31  Identities=19%  Similarity=-0.069  Sum_probs=25.5

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLK   99 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~   99 (224)
                      -..--.|+++|||+ ...+-...+.|..+++.
T Consensus       157 ~~WVlcvawsPDgk-~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  157 KNWVLCVAWSPDGK-KIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ccEEEEEEECCCcc-hhhccccCCeEEEecCC
Confidence            44556899999998 66777889999999986

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=95.30  E-value=0.44  Score=42.33  Aligned_cols=65  Identities=5%  Similarity=-0.179  Sum_probs=47.4

Q ss_pred             ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC----CCCCceEECCCCCEEEEEecC
Q 046107           70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP----GGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~----~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+.-+|+|+.+..|++.+..+.+..|+.+..+ ...+|+..-..    -.|.-.++++||.+..+....
T Consensus       270 ~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D  338 (641)
T KOG0772|consen  270 ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD  338 (641)
T ss_pred             eeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence            345567999998899999999999989887532 44556543211    257899999999997666555

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.30  E-value=1.4  Score=36.61  Aligned_cols=105  Identities=8%  Similarity=0.108  Sum_probs=65.3

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EE-ecCccccceeEEecCCCEEEEEeCCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IV-LEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~-~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ..+++.+|+.+-.|+...                ....|..++.+ |++- .+ .+++.-|.+|++-.+|+ ..+++-..
T Consensus        88 vS~LTynp~~rtLFav~n----------------~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~  149 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTN----------------KPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERD  149 (316)
T ss_pred             ccceeeCCCcceEEEecC----------------CCceEEEEecC-CceEEEecccccCChhHeEEecCCE-EEEEehhc
Confidence            567888887754444322                23467788876 4433 22 46788899999998876 55666667


Q ss_pred             CeEEEEEccCC-Ccccc---eEeeccCC---CCCCceEECCCC-CEEEEEecC
Q 046107           91 FRCIKHWLKLG-DKRDR---EIFIENLP---GGPDNINLAPDG-SFWISLIKM  135 (224)
Q Consensus        91 ~~I~~~~~~~~-~~~~~---~~~~~~~~---~~p~~i~~d~dG-~l~va~~~~  135 (224)
                      ++++.+..+.. .....   ++-.+...   ....|+|.|+.. ++|++-...
T Consensus       150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~  202 (316)
T COG3204         150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN  202 (316)
T ss_pred             ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC
Confidence            88888887621 11111   11111111   246899999975 588886654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.12  E-value=3.2  Score=39.62  Aligned_cols=103  Identities=10%  Similarity=-0.016  Sum_probs=56.7

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC----Ce----EEEEecCccccceeEEecCCCEEE
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS----KQ----VSIVLEGLYFANGVALSKHGDFVV   84 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~----g~----~~~~~~~~~~pngia~~~dg~~Ly   84 (224)
                      ...++++++|++++|-.                 .++.|..++...    +.    ............++++++..+..+
T Consensus       486 V~~i~fs~dg~~latgg-----------------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  548 (793)
T PLN00181        486 VCAIGFDRDGEFFATAG-----------------VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQV  548 (793)
T ss_pred             EEEEEECCCCCEEEEEe-----------------CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEE
Confidence            45677888888766632                 245555555321    00    001111223456889987533355


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecC
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKM  135 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~  135 (224)
                      ++....+.|..|++....  ....+. .-.+....+++.+ +|+++++....
T Consensus       549 as~~~Dg~v~lWd~~~~~--~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~D  597 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQ--LVTEMK-EHEKRVWSIDYSSADPTLLASGSDD  597 (793)
T ss_pred             EEEeCCCeEEEEECCCCe--EEEEec-CCCCCEEEEEEcCCCCCEEEEEcCC
Confidence            666677899999886421  111221 1123456788885 67777766655

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.12  E-value=2.3  Score=39.19  Aligned_cols=100  Identities=17%  Similarity=0.114  Sum_probs=55.2

Q ss_pred             cccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107           10 IRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        10 ~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      +..+.++++.+||. +.++....+          ........||..+.. +..+.+..+. .-....|+|||+.||+...
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~----------~~~d~~s~Lwv~~~g-g~~~~lt~g~-~~t~PsWspDG~~lw~v~d  416 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGR----------GAPDPASSLWVGPLG-GVAVQVLEGH-SLTRPSWSLDADAVWVVVD  416 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecC----------CCCCcceEEEEEeCC-CcceeeecCC-CCCCceECCCCCceEEEec
Confidence            45667788888884 444432100          001234578888864 4445444333 2556789999887876642


Q ss_pred             -----------CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           89 -----------WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        89 -----------~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                                 .+++|+..+++++.   .+.   ...+.+..+.+.+||.
T Consensus       417 g~~~~~v~~~~~~gql~~~~vd~ge---~~~---~~~g~Issl~wSpDG~  460 (591)
T PRK13616        417 GNTVVRVIRDPATGQLARTPVDASA---VAS---RVPGPISELQLSRDGV  460 (591)
T ss_pred             CcceEEEeccCCCceEEEEeccCch---hhh---ccCCCcCeEEECCCCC
Confidence                       22345544444321   111   1234578888888887

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.12  E-value=0.38  Score=42.58  Aligned_cols=64  Identities=8%  Similarity=0.102  Sum_probs=45.6

Q ss_pred             Cccccc-eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCC-CceEECCCCCEEEEEecC
Q 046107           67 GLYFAN-GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGP-DNINLAPDGSFWISLIKM  135 (224)
Q Consensus        67 ~~~~pn-gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~dG~l~va~~~~  135 (224)
                      ....|. ||+++|-...|+|+-....+|+.||..... ......+    ..| .-+++.++|.++++....
T Consensus       206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y----~~Plstvaf~~~G~~L~aG~s~  271 (673)
T KOG4378|consen  206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTY----SHPLSTVAFSECGTYLCAGNSK  271 (673)
T ss_pred             hccCCcCcceecCCccceEEEecccceEEEeeccccc-ccceeee----cCCcceeeecCCceEEEeecCC
Confidence            345564 999999776799999999999999986321 1122222    233 678999999888887666

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.08  E-value=0.13  Score=29.02  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEe
Q 046107           22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALS   77 (224)
Q Consensus        22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~   77 (224)
                      +.||+++.                 ..+.|..+|..+++......-...|.+|+++
T Consensus         4 ~~lyv~~~-----------------~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         4 TKLYVTNS-----------------GSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CEEEEEeC-----------------CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            36999984                 3578999998766655445556889998875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.01  E-value=1.1  Score=40.76  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=26.2

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCC
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASIN  214 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~  214 (224)
                      +.+..+|.+ |+.+-.+..+.+..-+.++.  ..+|++|+....
T Consensus       482 G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty--~~~G~qYv~~~~  523 (527)
T TIGR03075       482 GYFKAFDAKTGEELWKFKTGSGIVGPPVTY--EQDGKQYVAVLS  523 (527)
T ss_pred             CeEEEEECCCCCEeEEEeCCCCceecCEEE--EeCCEEEEEEEe
Confidence            678888865 99988887654321112221  358999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=94.94  E-value=1.4  Score=35.98  Aligned_cols=83  Identities=18%  Similarity=0.279  Sum_probs=54.0

Q ss_pred             eEEEEeCCCCeEEEEe-------cCccccceeEEecCC---C-EEEEEeCCCCeEEEEEcc-C--CCcccc--eEeeccC
Q 046107           50 QLLRYDPSSKQVSIVL-------EGLYFANGVALSKHG---D-FVVVCESWKFRCIKHWLK-L--GDKRDR--EIFIENL  113 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~-------~~~~~pngia~~~dg---~-~Lyv~~~~~~~I~~~~~~-~--~~~~~~--~~~~~~~  113 (224)
                      .+|.+||+.+.++.+.       +....+.|+|+..+-   . ++||+.. .+.|..|.+- +  ++.+..  +.|  ..
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~k~vR~f--k~  203 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGTKLVRQF--KI  203 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceEcceeeEee--ec
Confidence            4788888866666543       346678899987643   2 4566654 4889888874 2  122222  222  14


Q ss_pred             CCCCCceEECCC-CCEEEEEecC
Q 046107          114 PGGPDNINLAPD-GSFWISLIKM  135 (224)
Q Consensus       114 ~~~p~~i~~d~d-G~l~va~~~~  135 (224)
                      +..-.||..|.+ |.+|++....
T Consensus       204 ~tQTEG~VaDdEtG~LYIaeEdv  226 (364)
T COG4247         204 PTQTEGMVADDETGFLYIAEEDV  226 (364)
T ss_pred             CCcccceeeccccceEEEeeccc
Confidence            557789999876 8999998764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=94.92  E-value=2.7  Score=39.84  Aligned_cols=49  Identities=14%  Similarity=0.091  Sum_probs=32.6

Q ss_pred             EEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           51 LLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        51 l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      |-.++......+....+...|. ++.++|.+++|-|+. ..|.|..|+++.
T Consensus       120 vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~~~~  169 (933)
T KOG1274|consen  120 VKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWDLQD  169 (933)
T ss_pred             EEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceEEEEEccc
Confidence            3334433233344455777776 899999998665554 578999999875

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=94.83  E-value=1.3  Score=42.79  Aligned_cols=157  Identities=13%  Similarity=0.146  Sum_probs=100.6

Q ss_pred             ccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEE
Q 046107            7 CHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         7 ~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv   85 (224)
                      +...-.+.++++|- .+++|++|..               .....+..++... ....+...+..|..++++|-..++|+
T Consensus       476 ~~g~~~~~~lavD~~~~~~y~tDe~---------------~~~i~v~~~~g~~-~~vl~~~~l~~~r~~~v~p~~g~~~w  539 (877)
T KOG1215|consen  476 GDGLCIPEGLAVDWIGDNIYWTDEG---------------NCLIEVADLDGSS-RKVLVSKDLDLPRSIAVDPEKGLMFW  539 (877)
T ss_pred             ccCccccCcEEEEeccCCceecccC---------------CceeEEEEccCCc-eeEEEecCCCCccceeeccccCeeEE
Confidence            33455678899987 4689999954               1223344444331 23334455689999999998888999


Q ss_pred             EeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           86 CESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        86 ~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ++.. ..+|.|-.++|.   ...........-|+|+++|-. ..+|-++....                           
T Consensus       540 td~~~~~~i~ra~~dg~---~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~---------------------------  589 (877)
T KOG1215|consen  540 TDWGQPPRIERASLDGS---ERAVLVTNGILWPNGLTIDYETDRLYWADAKLD---------------------------  589 (877)
T ss_pred             ecCCCCchhhhhcCCCC---CceEEEeCCccCCCcceEEeecceeEEEcccCC---------------------------
Confidence            9976 346777777763   233333222357999999964 55777666541                           


Q ss_pred             hhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEE
Q 046107          164 MSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGK  220 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~  220 (224)
                              ..+.+++.+|+..+ ......  ++.+-.+....+++|-+.+....+.+
T Consensus       590 --------~~i~~~~~~g~~r~-~~~~~~--~~~p~~~~~~~~~iyw~d~~~~~~~~  635 (877)
T KOG1215|consen  590 --------YTIESANMDGQNRR-VVDSED--LPHPFGLSVFEDYIYWTDWSNRAISR  635 (877)
T ss_pred             --------cceeeeecCCCceE-Eecccc--CCCceEEEEecceeEEeeccccceEe
Confidence                    35778888887765 222221  34455666778888888887765544

>PRK13684 Ycf48-like protein; Provisional

Probab=94.79  E-value=2.3  Score=36.26  Aligned_cols=84  Identities=7%  Similarity=-0.065  Sum_probs=41.6

Q ss_pred             CceEEEEeCCCC-eEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-C--CCCCCceEE
Q 046107           48 HGQLLRYDPSSK-QVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-L--PGGPDNINL  122 (224)
Q Consensus        48 ~g~l~~~~~~~g-~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~--~~~p~~i~~  122 (224)
                      .|.+++-..+++ .++.... .....+++++.++++ +|+... .+.+..-..+++..  .+..... .  .....++++
T Consensus       192 ~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~-~G~~~~~s~d~G~s--W~~~~~~~~~~~~~l~~v~~  267 (334)
T PRK13684        192 RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR-GGQIRFNDPDDLES--WSKPIIPEITNGYGYLDLAY  267 (334)
T ss_pred             CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec-CCEEEEccCCCCCc--cccccCCccccccceeeEEE
Confidence            344555421222 3554432 234567899999887 666543 34443223443221  1111100 0  012456778


Q ss_pred             CCCCCEEEEEecC
Q 046107          123 APDGSFWISLIKM  135 (224)
Q Consensus       123 d~dG~l~va~~~~  135 (224)
                      .+++.+|++...+
T Consensus       268 ~~~~~~~~~G~~G  280 (334)
T PRK13684        268 RTPGEIWAGGGNG  280 (334)
T ss_pred             cCCCCEEEEcCCC
Confidence            8889999876543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=94.77  E-value=0.37  Score=41.63  Aligned_cols=65  Identities=11%  Similarity=0.009  Sum_probs=41.0

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCC
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMN  136 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~  136 (224)
                      .....+|+|.+||. |..+-....-=..+|+..   +....+.++-....-+++++|+|....+....+
T Consensus       303 s~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRt---gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn  367 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRT---GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN  367 (459)
T ss_pred             ccccceeEecCCCc-eeeccCccchhheeeccc---CcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence            34457999999997 766665543333445543   233344443223457899999998777766664

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.64  E-value=0.17  Score=44.34  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcc--cceEeecc--------------CCCCCCceEECCCCC-EEEEEe
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKR--DREIFIEN--------------LPGGPDNINLAPDGS-FWISLI  133 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~--~~~~~~~~--------------~~~~p~~i~~d~dG~-l~va~~  133 (224)
                      +.-|.+|.|.++|||++...+.|..||+.+..-.  .-++++.+              +.+.|.=+.+.-||+ +|+++.
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            4688899999999999999999999999753211  11333321              235688888999996 999875


Q ss_pred             c
Q 046107          134 K  134 (224)
Q Consensus       134 ~  134 (224)
                      -
T Consensus       394 L  394 (461)
T PF05694_consen  394 L  394 (461)
T ss_dssp             -
T ss_pred             c
Confidence            4

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.59  E-value=0.33  Score=41.47  Aligned_cols=86  Identities=19%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             CCCceEEEEeCCCCeEEEEe--cCccc-cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEE
Q 046107           46 EPHGQLLRYDPSSKQVSIVL--EGLYF-ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINL  122 (224)
Q Consensus        46 ~~~g~l~~~~~~~g~~~~~~--~~~~~-pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  122 (224)
                      ...+.|-.||++++. +.+.  +-... -..+.+.|+|++||++++ .+.+..||..+..+  ...++++..|.+..|.+
T Consensus       223 T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~  298 (412)
T KOG3881|consen  223 TRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKL--LGCGLKGITGSIRSIHC  298 (412)
T ss_pred             ecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCcee--eccccCCccCCcceEEE
Confidence            345667778876432 2222  11222 357889999999999996 47899999986433  22334456789999999


Q ss_pred             CCCCCEEEEEecC
Q 046107          123 APDGSFWISLIKM  135 (224)
Q Consensus       123 d~dG~l~va~~~~  135 (224)
                      .+.+.+....+-.
T Consensus       299 hp~~~~las~GLD  311 (412)
T KOG3881|consen  299 HPTHPVLASCGLD  311 (412)
T ss_pred             cCCCceEEeeccc
Confidence            9887777765544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.59  E-value=2.3  Score=36.55  Aligned_cols=68  Identities=19%  Similarity=0.093  Sum_probs=40.4

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcc---ccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY---FANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~---~pngia~~~dg~~Lyv~~~   88 (224)
                      ..+...+..+|+||+++.                  .|.++++|.++|+.........   .. +-++-.|+ .+|+.. 
T Consensus       102 ~~~~~~~~~~G~i~~g~~------------------~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~-~v~~~s-  160 (370)
T COG1520         102 QLSGPILGSDGKIYVGSW------------------DGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDG-TVYVGT-  160 (370)
T ss_pred             eccCceEEeCCeEEEecc------------------cceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCc-EEEEec-
Confidence            334445555788888863                  3589999996576554322222   12 22333455 477775 


Q ss_pred             CCCeEEEEEccC
Q 046107           89 WKFRCIKHWLKL  100 (224)
Q Consensus        89 ~~~~I~~~~~~~  100 (224)
                      ..+.++.++.+.
T Consensus       161 ~~g~~~al~~~t  172 (370)
T COG1520         161 DDGHLYALNADT  172 (370)
T ss_pred             CCCeEEEEEccC
Confidence            567888888873

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=94.55  E-value=1.1  Score=36.07  Aligned_cols=104  Identities=16%  Similarity=0.110  Sum_probs=52.9

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-C-------eEEEE-ecCccccceeEEecCCCE
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-K-------QVSIV-LEGLYFANGVALSKHGDF   82 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g-------~~~~~-~~~~~~pngia~~~dg~~   82 (224)
                      .-..|+++++|.||...                  ..|.|+|..+.. +       .-+.+ ..+-....-|-++++|- 
T Consensus        82 ~F~~i~~d~~G~LYaV~------------------~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-  142 (229)
T PF14517_consen   82 SFKFIFFDPTGVLYAVT------------------PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-  142 (229)
T ss_dssp             G-SEEEE-TTS-EEEEE------------------TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--
T ss_pred             ceeEEEecCCccEEEec------------------cccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-
Confidence            34478888899888775                  357788877532 1       11233 34555567888899996 


Q ss_pred             EEEEeCCCCeEEEE-EccCCC--cccceEeec-cCCCCCCceEECCCCCEEEEEecC
Q 046107           83 VVVCESWKFRCIKH-WLKLGD--KRDREIFIE-NLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        83 Lyv~~~~~~~I~~~-~~~~~~--~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ||.-+.. +++++. .+++..  -......+. ..-..+.-|...++|+||.....+
T Consensus       143 LY~i~~d-g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~~G  198 (229)
T PF14517_consen  143 LYAITPD-GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKSNG  198 (229)
T ss_dssp             EEEEETT-E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-ETT
T ss_pred             EEEEcCC-CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEecCC
Confidence            9988854 477777 454321  001111221 111246778888999999984443

>PHA02713 hypothetical protein; Provisional

Probab=94.53  E-value=2.5  Score=38.63  Aligned_cols=126  Identities=5%  Similarity=-0.007  Sum_probs=67.8

Q ss_pred             ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-----------------------CCeEEEEEccCCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW-----------------------KFRCIKHWLKLGD  102 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~-----------------------~~~I~~~~~~~~~  102 (224)
                      ..+.++|+.+++|+.+.. +..+   .+++. -+| .|||.-..                       ...+.+|++... 
T Consensus       367 ~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-  442 (557)
T PHA02713        367 RTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-  442 (557)
T ss_pred             ceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-
Confidence            468899998888876542 2222   13332 245 59987432                       246888888642 


Q ss_pred             cccceEeeccC-CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC
Q 046107          103 KRDREIFIENL-PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG  181 (224)
Q Consensus       103 ~~~~~~~~~~~-~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G  181 (224)
                        ......... +...-++++ -+|.||+..+.....                              .....|.++||+-
T Consensus       443 --~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~------------------------------~~~~~ve~Ydp~~  489 (557)
T PHA02713        443 --IWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEK------------------------------NVKTCIFRYNTNT  489 (557)
T ss_pred             --eEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCC------------------------------ccceeEEEecCCC
Confidence              122211111 112223443 468999986543100                              0004678999985


Q ss_pred             --cEEEEEeCCCCCcccceeEEEEECCEEEEEeCC
Q 046107          182 --SIIREFNDPNAKNISFVTSALEFQGNLYLASIN  214 (224)
Q Consensus       182 --~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~  214 (224)
                        ++...-..|...   ....++..+|+||+..-.
T Consensus       490 ~~~W~~~~~m~~~r---~~~~~~~~~~~iyv~Gg~  521 (557)
T PHA02713        490 YNGWELITTTESRL---SALHTILHDNTIMMLHCY  521 (557)
T ss_pred             CCCeeEccccCccc---ccceeEEECCEEEEEeee
Confidence              565443333321   223455678999997643

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.46  E-value=3.1  Score=36.40  Aligned_cols=132  Identities=6%  Similarity=-0.073  Sum_probs=72.1

Q ss_pred             CceEEEEeCCCCe-EEEEe-cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-C---CCCCCceE
Q 046107           48 HGQLLRYDPSSKQ-VSIVL-EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-L---PGGPDNIN  121 (224)
Q Consensus        48 ~g~l~~~~~~~g~-~~~~~-~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~---~~~p~~i~  121 (224)
                      .|.+++-+..+.. ++.+. .......++++.+||. ++++.. .+.|++-..++. ..+...|... .   ...+.++.
T Consensus       258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g~-~G~l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~  334 (398)
T PLN00033        258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLTR-GGGLYVSKGTGL-TEEDFDFEEADIKSRGFGILDVG  334 (398)
T ss_pred             CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEeC-CceEEEecCCCC-cccccceeecccCCCCcceEEEE
Confidence            4677775554332 34443 2344557888999987 666653 455665544441 1111122211 1   11356788


Q ss_pred             ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEE
Q 046107          122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSA  201 (224)
Q Consensus       122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~  201 (224)
                      +.+++++|++...+                                     .+++-..+|+.-......++-. .....+
T Consensus       335 ~~~d~~~~a~G~~G-------------------------------------~v~~s~D~G~tW~~~~~~~~~~-~~ly~v  376 (398)
T PLN00033        335 YRSKKEAWAAGGSG-------------------------------------ILLRSTDGGKSWKRDKGADNIA-ANLYSV  376 (398)
T ss_pred             EcCCCcEEEEECCC-------------------------------------cEEEeCCCCcceeEccccCCCC-cceeEE
Confidence            88899999987654                                     5667777787644443222211 122334


Q ss_pred             E-EECCEEEEEeCCCCeEEEe
Q 046107          202 L-EFQGNLYLASINSNFIGKL  221 (224)
Q Consensus       202 ~-~~~g~lyv~~~~~~~i~~~  221 (224)
                      . .++++.|+....+ .|.|+
T Consensus       377 ~f~~~~~g~~~G~~G-~il~~  396 (398)
T PLN00033        377 KFFDDKKGFVLGNDG-VLLRY  396 (398)
T ss_pred             EEcCCCceEEEeCCc-EEEEe
Confidence            4 3568888887654 35443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=94.27  E-value=2.9  Score=35.21  Aligned_cols=53  Identities=15%  Similarity=0.189  Sum_probs=41.0

Q ss_pred             CCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107           46 EPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLK   99 (224)
Q Consensus        46 ~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~   99 (224)
                      -.+|+|.-+|..+-.+..+.++.-.| ..++||+||+ ..++.+....|..+|+.
T Consensus        42 c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~   95 (405)
T KOG1273|consen   42 CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLL   95 (405)
T ss_pred             ccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEecc
Confidence            35789999998765555455565566 6899999997 77777888999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.24  E-value=0.54  Score=43.39  Aligned_cols=84  Identities=17%  Similarity=0.086  Sum_probs=56.1

Q ss_pred             eEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCE
Q 046107           50 QLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF  128 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l  128 (224)
                      +|=-||..+|...++..+...| ..++++|+|++| ++-...+.|..||+..+..  ...+.+. .+..+.+.+..||++
T Consensus       558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~--v~~l~~H-t~ti~SlsFS~dg~v  633 (707)
T KOG0263|consen  558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL--VKQLKGH-TGTIYSLSFSRDGNV  633 (707)
T ss_pred             eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc--hhhhhcc-cCceeEEEEecCCCE
Confidence            4444555555555556677666 589999999744 3334567888898864321  1122222 456788999999999


Q ss_pred             EEEEecCCc
Q 046107          129 WISLIKMNS  137 (224)
Q Consensus       129 ~va~~~~~~  137 (224)
                      +++.+..++
T Consensus       634 Lasgg~Dns  642 (707)
T KOG0263|consen  634 LASGGADNS  642 (707)
T ss_pred             EEecCCCCe
Confidence            999988853

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.23  E-value=1.5  Score=38.03  Aligned_cols=81  Identities=16%  Similarity=0.092  Sum_probs=51.7

Q ss_pred             eEEEEeCCCCeEEEEe-cC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           50 QLLRYDPSSKQVSIVL-EG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~-~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                      .++.+|.++|...... .+ ...+...+|-|||. =+|+-+..+.|..++.+|...+..+-.  ..+ ...++++.+||.
T Consensus       292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~gv--r~~-~v~dlait~Dgk  367 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEGV--RDP-KVHDLAITYDGK  367 (519)
T ss_pred             heeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhccccc--ccc-eeEEEEEcCCCc
Confidence            4666777666544332 22 23345789999996 477777788999999988543333221  112 357899999998


Q ss_pred             EEEEEec
Q 046107          128 FWISLIK  134 (224)
Q Consensus       128 l~va~~~  134 (224)
                      ..++...
T Consensus       368 ~vl~v~~  374 (519)
T KOG0293|consen  368 YVLLVTV  374 (519)
T ss_pred             EEEEEec
Confidence            5555443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=94.23  E-value=5.3  Score=38.13  Aligned_cols=86  Identities=10%  Similarity=-0.025  Sum_probs=45.0

Q ss_pred             CCCceEEEEeCCCCeEEEEecCccccceeEEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107           46 EPHGQLLRYDPSSKQVSIVLEGLYFANGVALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        46 ~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      ..+|.|..+|..++..............+++.+ +|. ++++-+..+.|..|++..... ....+. ........+.+. 
T Consensus       595 s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~~~~-~~~~~~-~h~~~V~~v~f~-  670 (793)
T PLN00181        595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRNPKL-PLCTMI-GHSKTVSYVRFV-  670 (793)
T ss_pred             cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCCc-cceEec-CCCCCEEEEEEe-
Confidence            346667777765443322222223445677754 566 555666788999999864211 111221 111233556664 


Q ss_pred             CCCEEEEEecC
Q 046107          125 DGSFWISLIKM  135 (224)
Q Consensus       125 dG~l~va~~~~  135 (224)
                      ++..+++....
T Consensus       671 ~~~~lvs~s~D  681 (793)
T PLN00181        671 DSSTLVSSSTD  681 (793)
T ss_pred             CCCEEEEEECC
Confidence            56655555544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.21  E-value=2.7  Score=38.99  Aligned_cols=146  Identities=14%  Similarity=0.111  Sum_probs=86.4

Q ss_pred             eEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE---ecCccccceeEEecCCCEEEEEeCCCCe
Q 046107           16 VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV---LEGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        16 v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~---~~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      ++++++|.+.+|.-                  ...|-.+|-++++....   .+....-..++++||++.||.+. .+..
T Consensus        25 ~~~s~nG~~L~t~~------------------~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~l   85 (775)
T KOG0319|consen   25 VAWSSNGQHLYTAC------------------GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQL   85 (775)
T ss_pred             eeECCCCCEEEEec------------------CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccce
Confidence            78889998888752                  23466677666655311   22345567899999988665554 5566


Q ss_pred             EEEEEccCCCcccceEeeccCCCCC-CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCce
Q 046107           93 CIKHWLKLGDKRDREIFIENLPGGP-DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAA  171 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  171 (224)
                      +..|.+..++.  .+.|.. ....| -.|++++-|.+..+.+..                                    
T Consensus        86 lrv~~L~tgk~--irswKa-~He~Pvi~ma~~~~g~LlAtggaD------------------------------------  126 (775)
T KOG0319|consen   86 LRVWSLPTGKL--IRSWKA-IHEAPVITMAFDPTGTLLATGGAD------------------------------------  126 (775)
T ss_pred             EEEEEcccchH--hHhHhh-ccCCCeEEEEEcCCCceEEecccc------------------------------------
Confidence            77777764321  122221 11223 689999988666655544                                    


Q ss_pred             EEEEEECCCC-cEEEEEeCCCCCcccceeEEEEECC---EEEEEeCCCCeEEEeeC
Q 046107          172 AKVVKVSANG-SIIREFNDPNAKNISFVTSALEFQG---NLYLASINSNFIGKLPL  223 (224)
Q Consensus       172 ~~v~~~~~~G-~~~~~~~~~~g~~~~~~t~~~~~~g---~lyv~~~~~~~i~~~~~  223 (224)
                      ++|...|-++ .-+-.+....|    .++.++++..   .|.++....+.+..+++
T Consensus       127 ~~v~VWdi~~~~~th~fkG~gG----vVssl~F~~~~~~~lL~sg~~D~~v~vwnl  178 (775)
T KOG0319|consen  127 GRVKVWDIKNGYCTHSFKGHGG----VVSSLLFHPHWNRWLLASGATDGTVRVWNL  178 (775)
T ss_pred             ceEEEEEeeCCEEEEEecCCCc----eEEEEEeCCccchhheeecCCCceEEEEEc
Confidence            5666666443 44455655434    3556665543   34466666666666655

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=94.15  E-value=1.5  Score=37.48  Aligned_cols=61  Identities=15%  Similarity=0.149  Sum_probs=41.3

Q ss_pred             ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+++.+||..|.-+...+..|..++++.+.   ...+.-...+....+.+.|||.+++|..-.
T Consensus       199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~---~~pL~~~glgg~slLkwSPdgd~lfaAt~d  259 (445)
T KOG2139|consen  199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQ---KIPLIPKGLGGFSLLKWSPDGDVLFAATCD  259 (445)
T ss_pred             eEEEEcCCCCEEeecccCcceEEEEcCCCCC---cccccccCCCceeeEEEcCCCCEEEEeccc
Confidence            4789999998565555677889999997532   212221123455788999999977776554

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=94.12  E-value=0.18  Score=28.42  Aligned_cols=33  Identities=15%  Similarity=-0.002  Sum_probs=26.1

Q ss_pred             cccccccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC
Q 046107            8 HLIRFANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS   57 (224)
Q Consensus         8 ~~~~~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~   57 (224)
                      ..+..|+++++++. +.+|++|..                 ...+.+.+.+
T Consensus         6 ~~~~~~~~la~d~~~~~lYw~D~~-----------------~~~I~~~~~~   39 (43)
T smart00135        6 EGLGHPNGLAVDWIEGRLYWTDWG-----------------LDVIEVANLD   39 (43)
T ss_pred             CCCCCcCEEEEeecCCEEEEEeCC-----------------CCEEEEEeCC
Confidence            47889999999986 579999965                 3667777765

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=94.09  E-value=2.7  Score=34.26  Aligned_cols=61  Identities=11%  Similarity=0.097  Sum_probs=35.2

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .-++.+.+++||++|-+++  ...|.-++++.  ++..+.+  ..|.....-.+.|+-++|||.+..
T Consensus       185 s~VtSlEvs~dG~ilTia~--gssV~Fwdaks--f~~lKs~--k~P~nV~SASL~P~k~~fVaGged  245 (334)
T KOG0278|consen  185 SPVTSLEVSQDGRILTIAY--GSSVKFWDAKS--FGLLKSY--KMPCNVESASLHPKKEFFVAGGED  245 (334)
T ss_pred             CCCcceeeccCCCEEEEec--CceeEEecccc--ccceeec--cCccccccccccCCCceEEecCcc
Confidence            3457899999998665554  34566566642  1112211  123333344455777888887766

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.95  E-value=1.3  Score=39.02  Aligned_cols=82  Identities=21%  Similarity=0.089  Sum_probs=48.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe--EEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR--CIKHWLKLGDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~--I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      +.-.||+++.++++++.+.........-.++|||++|-+.....+.  |..+++..+.  ..+++..  ...-..-.+++
T Consensus       304 G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~--~~~~lt~--~~~~e~ps~~~  379 (425)
T COG0823         304 GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG--KIRILTS--TYLNESPSWAP  379 (425)
T ss_pred             CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC--cEEEccc--cccCCCCCcCC
Confidence            3447999999877776665555555577899999988766654555  6666654311  1333321  11223445566


Q ss_pred             CCCEEEEE
Q 046107          125 DGSFWISL  132 (224)
Q Consensus       125 dG~l~va~  132 (224)
                      +|...+-.
T Consensus       380 ng~~i~~~  387 (425)
T COG0823         380 NGRMIMFS  387 (425)
T ss_pred             CCceEEEe
Confidence            66644433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.95  E-value=3.3  Score=34.76  Aligned_cols=97  Identities=20%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      .|++++.|.|.|-++...                 ++.+--++.-.|+...+..-...+.-+.|+|.|.+.+|.-  +++
T Consensus       130 Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~  190 (362)
T KOG0294|consen  130 VTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNK  190 (362)
T ss_pred             cceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccE
Confidence            578888888887777532                 2222222222233332333345566699999999777775  456


Q ss_pred             EEEEEccCCCcccceEeecc-CCCCCCceEECCCCCEEEEEe
Q 046107           93 CIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGSFWISLI  133 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~  133 (224)
                      |-.|.++..     .+|... .+..+-.+.++..+.+.++..
T Consensus       191 i~i~q~d~A-----~v~~~i~~~~r~l~~~~l~~~~L~vG~d  227 (362)
T KOG0294|consen  191 IDIYQLDNA-----SVFREIENPKRILCATFLDGSELLVGGD  227 (362)
T ss_pred             EEEEecccH-----hHhhhhhccccceeeeecCCceEEEecC
Confidence            666665432     222211 123345555555555555543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.89  E-value=2.5  Score=36.14  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             CCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCeEEEE-Ecc-CCCcccceEeecc----CCCCCCc
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCESWKFRCIKH-WLK-LGDKRDREIFIEN----LPGGPDN  119 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~-~~~-~~~~~~~~~~~~~----~~~~p~~  119 (224)
                      ..|.|+.+|..+-+..........+ ..+|+++||. +..+.+.+|.|.|+ ... |.      .+++.    .+.....
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~------kl~eFRRG~~~~~IyS  223 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQ------KLYEFRRGTYPVSIYS  223 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCcc------EeeeeeCCceeeEEEE
Confidence            3688888887643333334455554 5899999997 77777888886664 443 32      22222    1235578


Q ss_pred             eEECCCCCEEEEEecCC
Q 046107          120 INLAPDGSFWISLIKMN  136 (224)
Q Consensus       120 i~~d~dG~l~va~~~~~  136 (224)
                      +++++++.+..+.....
T Consensus       224 L~Fs~ds~~L~~sS~Te  240 (391)
T KOG2110|consen  224 LSFSPDSQFLAASSNTE  240 (391)
T ss_pred             EEECCCCCeEEEecCCC
Confidence            99999999888877653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.85  E-value=4.1  Score=35.46  Aligned_cols=84  Identities=14%  Similarity=0.107  Sum_probs=46.8

Q ss_pred             ceEEEEeCCCCeEEEEecCccccc--eeEEecCCCEEEEEeCC----------CCeEEEEEccCCCcccceEeeccC-CC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFAN--GVALSKHGDFVVVCESW----------KFRCIKHWLKLGDKRDREIFIENL-PG  115 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~pn--gia~~~dg~~Lyv~~~~----------~~~I~~~~~~~~~~~~~~~~~~~~-~~  115 (224)
                      -.|+.+|..+|+.  +.+.+..+.  +++|.+|++.+|.+...          ..+|++..+.... .+..++++.. ..
T Consensus       150 ~~l~v~Dl~tg~~--l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~-~~d~lvfe~~~~~  226 (414)
T PF02897_consen  150 YTLRVFDLETGKF--LPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ-SEDELVFEEPDEP  226 (414)
T ss_dssp             EEEEEEETTTTEE--EEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G-GG-EEEEC-TTCT
T ss_pred             EEEEEEECCCCcC--cCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh-HhCeeEEeecCCC
Confidence            4588888876743  233333332  39999998888777633          3457877775422 2223444321 11


Q ss_pred             C-CCceEECCCCCEEEEEecC
Q 046107          116 G-PDNINLAPDGSFWISLIKM  135 (224)
Q Consensus       116 ~-p~~i~~d~dG~l~va~~~~  135 (224)
                      . --++..++||++.+-....
T Consensus       227 ~~~~~~~~s~d~~~l~i~~~~  247 (414)
T PF02897_consen  227 FWFVSVSRSKDGRYLFISSSS  247 (414)
T ss_dssp             TSEEEEEE-TTSSEEEEEEES
T ss_pred             cEEEEEEecCcccEEEEEEEc
Confidence            2 2367788999865544443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=93.83  E-value=5.3  Score=36.72  Aligned_cols=134  Identities=12%  Similarity=0.158  Sum_probs=79.7

Q ss_pred             CceEEEEeCCCCeEEEE-ecC----ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceE
Q 046107           48 HGQLLRYDPSSKQVSIV-LEG----LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNIN  121 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~-~~~----~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~  121 (224)
                      +-.|||+.++. .++.. .+.    .....-|.++-|++.++++.-+...+..+...+....+...+... .-....-|+
T Consensus       404 ~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~  482 (691)
T KOG2048|consen  404 RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLV  482 (691)
T ss_pred             ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEE
Confidence            44688998874 33322 222    233457888888887887776777888888765432222222211 113457899


Q ss_pred             ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccceeE
Q 046107          122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFVTS  200 (224)
Q Consensus       122 ~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~t~  200 (224)
                      +.++|++.++....                                    +.|+.++-++.....+. ..+    ..+|.
T Consensus       483 ~SsdG~yiaa~~t~------------------------------------g~I~v~nl~~~~~~~l~~rln----~~vTa  522 (691)
T KOG2048|consen  483 VSSDGNYIAAISTR------------------------------------GQIFVYNLETLESHLLKVRLN----IDVTA  522 (691)
T ss_pred             EcCCCCEEEEEecc------------------------------------ceEEEEEcccceeecchhccC----cceee
Confidence            99999988887765                                    67888887765544443 222    12333


Q ss_pred             EEE---ECCEEEEEeCCCCeEEEeeC
Q 046107          201 ALE---FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       201 ~~~---~~g~lyv~~~~~~~i~~~~~  223 (224)
                      +..   .-++|-++. .+|.+..+++
T Consensus       523 ~~~~~~~~~~lvvat-s~nQv~efdi  547 (691)
T KOG2048|consen  523 AAFSPFVRNRLVVAT-SNNQVFEFDI  547 (691)
T ss_pred             eeccccccCcEEEEe-cCCeEEEEec
Confidence            332   235555554 3466666654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=93.78  E-value=0.68  Score=39.73  Aligned_cols=101  Identities=20%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ....|.|.+.|||+...+-+.                 +.+|--++.++|+.-....+ ..--.-|+++.|.+ |.|+.+
T Consensus       367 q~lVn~V~fSPd~r~IASaSF-----------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~S  428 (480)
T KOG0271|consen  367 QALVNHVSFSPDGRYIASASF-----------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGS  428 (480)
T ss_pred             hhheeeEEECCCccEEEEeec-----------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcC
Confidence            345678888888765555322                 23343445545553322222 33346789999985 999998


Q ss_pred             CCCeEEEEEccCCCcccceEeeccCCCC---CCceEECCCCCEEEEEec
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENLPGG---PDNINLAPDGSFWISLIK  134 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~---p~~i~~d~dG~l~va~~~  134 (224)
                      ....+-.+++...     +. ..++||.   ...+.+.+||...++.+.
T Consensus       429 kDsTLKvw~V~tk-----Kl-~~DLpGh~DEVf~vDwspDG~rV~sggk  471 (480)
T KOG0271|consen  429 KDSTLKVWDVRTK-----KL-KQDLPGHADEVFAVDWSPDGQRVASGGK  471 (480)
T ss_pred             CCceEEEEEeeee-----ee-cccCCCCCceEEEEEecCCCceeecCCC
Confidence            8888888887542     22 2245553   345556688877665444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=93.73  E-value=1.3  Score=39.73  Aligned_cols=65  Identities=17%  Similarity=0.125  Sum_probs=42.1

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ....+|.++++|||++|-+. +..+.+..|+-+.-.+  ..++ ....+..-.+++.+||++.+..+..
T Consensus       289 ~~g~in~f~FS~DG~~LA~V-SqDGfLRvF~fdt~eL--lg~m-kSYFGGLLCvcWSPDGKyIvtGGED  353 (636)
T KOG2394|consen  289 GEGSINEFAFSPDGKYLATV-SQDGFLRIFDFDTQEL--LGVM-KSYFGGLLCVCWSPDGKYIVTGGED  353 (636)
T ss_pred             ccccccceeEcCCCceEEEE-ecCceEEEeeccHHHH--HHHH-HhhccceEEEEEcCCccEEEecCCc
Confidence            34478999999999876444 3567777777642110  0111 1123456788999999988887766

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=93.69  E-value=4.9  Score=36.13  Aligned_cols=117  Identities=18%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             CceEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEe-CCCCeEEEEEccCCCcccceEeeccCCCCC-CceEECC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGDFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENLPGGP-DNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~  124 (224)
                      .-.|+-++.++.... +.-...+| +.+.|+++++..-|+. .+-.++..|++++.      ++.+ .+..| +.+-+.|
T Consensus       250 Eq~Lyll~t~g~s~~-V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~d-f~egpRN~~~fnp  321 (566)
T KOG2315|consen  250 EQTLYLLATQGESVS-VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFD-FPEGPRNTAFFNP  321 (566)
T ss_pred             cceEEEEEecCceEE-EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEe-CCCCCccceEECC
Confidence            346777877632222 32223445 6899999998665554 77889999999762      3343 33345 6677899


Q ss_pred             CCCE-EEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEE
Q 046107          125 DGSF-WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIR  185 (224)
Q Consensus       125 dG~l-~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~  185 (224)
                      .|++ .+|.++.-..-+++.-. +. ++.+.+..           .....++...|||+..-
T Consensus       322 ~g~ii~lAGFGNL~G~mEvwDv-~n-~K~i~~~~-----------a~~tt~~eW~PdGe~fl  370 (566)
T KOG2315|consen  322 HGNIILLAGFGNLPGDMEVWDV-PN-RKLIAKFK-----------AANTTVFEWSPDGEYFL  370 (566)
T ss_pred             CCCEEEEeecCCCCCceEEEec-cc-hhhccccc-----------cCCceEEEEcCCCcEEE
Confidence            9994 45555542222222111 11 23222211           11267788888887643

>PRK10115 protease 2; Provisional

Probab=93.66  E-value=6.4  Score=37.07  Aligned_cols=48  Identities=4%  Similarity=0.037  Sum_probs=30.5

Q ss_pred             eEEEEeCCCCe--EEEEecCccccceeEEecCCCEEEEEeCC-----CCeEEEEEccC
Q 046107           50 QLLRYDPSSKQ--VSIVLEGLYFANGVALSKHGDFVVVCESW-----KFRCIKHWLKL  100 (224)
Q Consensus        50 ~l~~~~~~~g~--~~~~~~~~~~pngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~  100 (224)
                      .|+.+|..+|+  .+. .++..  .+++|++|++.||++...     ..+|++.++.+
T Consensus       154 ~l~v~d~~tg~~l~~~-i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt  208 (686)
T PRK10115        154 GIRFRNLETGNWYPEL-LDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT  208 (686)
T ss_pred             EEEEEECCCCCCCCcc-ccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence            57777776554  121 12222  469999999888777432     25788888864

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=93.64  E-value=0.094  Score=29.58  Aligned_cols=18  Identities=28%  Similarity=0.632  Sum_probs=16.2

Q ss_pred             ccccceEEecCCcEEEEe
Q 046107           11 RFANDVIEASDGSLYITV   28 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~   28 (224)
                      ..+++|++|++|++|++=
T Consensus        13 ~~~~~IavD~~GNiYv~G   30 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTG   30 (38)
T ss_pred             eeEEEEEECCCCCEEEEE
Confidence            569999999999999984

SBBP stands for Seven Bladed Beta Propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.59  E-value=3.9  Score=34.39  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=41.5

Q ss_pred             CceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .|.||+=.-.+..++.+..+ ....+.+..++||+++.|+  ..+.+++-.-.|..  ..+..-.........|.++++|
T Consensus       123 ~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~  198 (302)
T PF14870_consen  123 RGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDG  198 (302)
T ss_dssp             T--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS
T ss_pred             CCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecCCCc--cceEEccCccceehhceecCCC
Confidence            46676655443456665433 4445678888999755555  55666654433311  1222221223467899999999


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      ++|+...++
T Consensus       199 ~lw~~~~Gg  207 (302)
T PF14870_consen  199 NLWMLARGG  207 (302)
T ss_dssp             -EEEEETTT
T ss_pred             CEEEEeCCc
Confidence            999987544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=93.54  E-value=4.8  Score=35.25  Aligned_cols=61  Identities=13%  Similarity=0.033  Sum_probs=39.7

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      -...+|+|||- ||.+-+..+.|-.|++...  .+...|- +-.+-..-++|..+|.+.+.....
T Consensus       350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~--~~~a~Fp-ght~~vk~i~FsENGY~Lat~add  410 (506)
T KOG0289|consen  350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQ--TNVAKFP-GHTGPVKAISFSENGYWLATAADD  410 (506)
T ss_pred             eEEeeEcCCce-EEeccCCCceEEEEEcCCc--cccccCC-CCCCceeEEEeccCceEEEEEecC
Confidence            45789999994 8999898899988988631  1222232 122345788898777555554444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=93.40  E-value=1.6  Score=40.96  Aligned_cols=102  Identities=15%  Similarity=0.113  Sum_probs=65.8

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      ..++++|.-+++.++-.                 .+|.+..+|.+++....-..-...+.+|..+.... +++.......
T Consensus       496 V~gla~D~~n~~~vsa~-----------------~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~  557 (910)
T KOG1539|consen  496 VTGLAVDGTNRLLVSAG-----------------ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFS  557 (910)
T ss_pred             eeEEEecCCCceEEEcc-----------------CcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCcee
Confidence            34777776666666642                 36888888876433222223445667888887665 7777777889


Q ss_pred             EEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           93 CIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      |..+|....+  -.+.|- +-....+.+++.+||++.++..-.
T Consensus       558 I~vvD~~t~k--vvR~f~-gh~nritd~~FS~DgrWlisasmD  597 (910)
T KOG1539|consen  558 IRVVDVVTRK--VVREFW-GHGNRITDMTFSPDGRWLISASMD  597 (910)
T ss_pred             EEEEEchhhh--hhHHhh-ccccceeeeEeCCCCcEEEEeecC
Confidence            9999875321  122222 223467899999999988877664

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=93.35  E-value=5.4  Score=38.00  Aligned_cols=58  Identities=7%  Similarity=0.078  Sum_probs=37.1

Q ss_pred             ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .+|+.  ++. .|++.+..+.|.+|...-.   +...++....--.+.++++.+|++.++....
T Consensus        60 ~~ia~--~s~-~f~~~s~~~tv~~y~fps~---~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD  117 (933)
T KOG1274|consen   60 SSIAC--YSN-HFLTGSEQNTVLRYKFPSG---EEDTILARFTLPIRDLAVSGSGKMIAAGSDD  117 (933)
T ss_pred             EEEee--ccc-ceEEeeccceEEEeeCCCC---CccceeeeeeccceEEEEecCCcEEEeecCc
Confidence            34444  344 6777788999999987531   2222222222234899999999988887766

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=93.35  E-value=3.8  Score=35.44  Aligned_cols=86  Identities=8%  Similarity=0.119  Sum_probs=56.2

Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc---CCCCCCce
Q 046107           44 EGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN---LPGGPDNI  120 (224)
Q Consensus        44 ~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~---~~~~p~~i  120 (224)
                      ....+..|..++-.+|+.-...+....-..+.|+.||+ ++++.....+|..+++..++     ++.+.   ....|.-.
T Consensus       149 sag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~-----~v~e~~~heG~k~~Ra  222 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGT-----VVSEGVAHEGAKPARA  222 (472)
T ss_pred             hccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCc-----EeeecccccCCCccee
Confidence            33455667777766565333333344456889999997 88888888999999996432     22222   22356666


Q ss_pred             EECCCCCEEEEEecC
Q 046107          121 NLAPDGSFWISLIKM  135 (224)
Q Consensus       121 ~~d~dG~l~va~~~~  135 (224)
                      .+-.+|.+..+.+..
T Consensus       223 ifl~~g~i~tTGfsr  237 (472)
T KOG0303|consen  223 IFLASGKIFTTGFSR  237 (472)
T ss_pred             EEeccCceeeecccc
Confidence            777788877777665

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=93.30  E-value=1.3  Score=40.06  Aligned_cols=20  Identities=25%  Similarity=0.421  Sum_probs=15.4

Q ss_pred             cccccceEEecCCcEEEEeC
Q 046107           10 IRFANDVIEASDGSLYITVS   29 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~   29 (224)
                      ....|.+..|.+|.+|+++.
T Consensus       289 ~S~vnsL~~D~dGsLWv~t~  308 (671)
T COG3292         289 VSTVNSLWLDTDGSLWVGTY  308 (671)
T ss_pred             cccccceeeccCCCEeeecc
Confidence            45557788888999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=93.23  E-value=1.4  Score=35.83  Aligned_cols=66  Identities=15%  Similarity=0.190  Sum_probs=45.4

Q ss_pred             Cccccc---eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           67 GLYFAN---GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        67 ~~~~pn---gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ....|.   .-.++|+. .+||+-.....+++||-+.+.  +...+..+-++-.-.+.+.|||.+|......
T Consensus       220 s~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  220 SYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             eccCccccccccccCCC-ceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCC
Confidence            345565   44588987 499999999999999987431  1222222334444778889999999887766

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.13  E-value=6  Score=35.20  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=21.0

Q ss_pred             EEEEEEC--CCCcEEEEEeCCCCCcccceeEEEEECCEEEEEe
Q 046107          172 AKVVKVS--ANGSIIREFNDPNAKNISFVTSALEFQGNLYLAS  212 (224)
Q Consensus       172 ~~v~~~~--~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~  212 (224)
                      +.|.-++  |+++++. +..|+|-.+..+-.....++++|-.+
T Consensus       444 ~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         444 GLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             ceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEec
Confidence            4554443  5666643 34566654444444444566777544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.08  E-value=1.9  Score=36.90  Aligned_cols=84  Identities=12%  Similarity=0.177  Sum_probs=56.9

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCC----CCeEEEEEcc-CCCcccceEeeccCCCCCC-c
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESW----KFRCIKHWLK-LGDKRDREIFIENLPGGPD-N  119 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~----~~~I~~~~~~-~~~~~~~~~~~~~~~~~p~-~  119 (224)
                      +...|+.++.+++..+.+..+...-+ -+.++++++.||+....    ...|++++++ ++   ..+.+..  ..... .
T Consensus       258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~--~~~~~~~  332 (353)
T PF00930_consen  258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTC--EDGDHYS  332 (353)
T ss_dssp             SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESST--TSSTTEE
T ss_pred             CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccC--CCCCceE
Confidence            46689999998776666555544444 46889999999988865    4589999987 52   3333321  12233 7


Q ss_pred             eEECCCCCEEEEEecC
Q 046107          120 INLAPDGSFWISLIKM  135 (224)
Q Consensus       120 i~~d~dG~l~va~~~~  135 (224)
                      ..++++|+.++-...+
T Consensus       333 ~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  333 ASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEE-TTSSEEEEEEES
T ss_pred             EEECCCCCEEEEEEcC
Confidence            9999999999887665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.95  E-value=3.2  Score=35.98  Aligned_cols=63  Identities=16%  Similarity=0.202  Sum_probs=40.7

Q ss_pred             hhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEec-CCCEE-EEEeCC----CCeEEEEEccCC
Q 046107           39 YLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSK-HGDFV-VVCESW----KFRCIKHWLKLG  101 (224)
Q Consensus        39 ~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~-dg~~L-yv~~~~----~~~I~~~~~~~~  101 (224)
                      +.++++..+..+|+++|.++|+.+.+...-...+-+.++| |...| |+=+..    ..+||.++.+|.
T Consensus       158 f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  158 FREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             HHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             HHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence            4566777889999999999999998887777888888998 44445 444432    358899988764

>PRK13684 Ycf48-like protein; Provisional

Probab=92.90  E-value=5.3  Score=33.99  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             CceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .|.|++-+-.+..++.+..+ ....+++++.+++.  |++-...+.+++-..+++.  ..+...........++++.++|
T Consensus       151 ~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~--~v~~g~~G~i~~s~~~gg~--tW~~~~~~~~~~l~~i~~~~~g  226 (334)
T PRK13684        151 VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK--YVAVSSRGNFYSTWEPGQT--AWTPHQRNSSRRLQSMGFQPDG  226 (334)
T ss_pred             cceEEEECCCCCCceeCcCCCcceEEEEEECCCCe--EEEEeCCceEEEEcCCCCC--eEEEeeCCCcccceeeeEcCCC
Confidence            44566644433455554433 23456888888874  3333345677765333311  1222211122356788888899


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      ++|++...+
T Consensus       227 ~~~~vg~~G  235 (334)
T PRK13684        227 NLWMLARGG  235 (334)
T ss_pred             CEEEEecCC
Confidence            998876544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=92.90  E-value=5.1  Score=33.77  Aligned_cols=110  Identities=9%  Similarity=0.108  Sum_probs=63.0

Q ss_pred             ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc----CCCCCCceEECCCCCEEEEEecCCchhhhhhccCh
Q 046107           72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN----LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSK  147 (224)
Q Consensus        72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p  147 (224)
                      .+..++|..+...|+......=+.++...   +...++...    +...++...+|+.|++.++...+            
T Consensus       110 ~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK------------  174 (405)
T KOG1273|consen  110 WGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK------------  174 (405)
T ss_pred             ceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCccccccccccccccCCCCEEEEecCc------------
Confidence            47778886666777665444434444432   112233222    12356666899999977776666            


Q ss_pred             hHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccceeEEE-EECCEEEEEeCCCCeEEEeeC
Q 046107          148 NRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISFVTSAL-EFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~~t~~~-~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                              |.+..++.+- +.+..+....   ...+-.+. ...|+.++.+....-|..|++
T Consensus       175 ------------------------Gkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  175 ------------------------GKLLVYDAETLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             ------------------------ceEEEEecchheeeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence                                    7888888763 4555554322   12333333 346777777777666666654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.65  E-value=4.8  Score=32.81  Aligned_cols=66  Identities=14%  Similarity=0.018  Sum_probs=39.7

Q ss_pred             ccceeEEecCCCEE-EEEe-CCCCeEEEEEccCCCcccceEeec------cCCCCCCceEECCCCCEEEEEecC
Q 046107           70 FANGVALSKHGDFV-VVCE-SWKFRCIKHWLKLGDKRDREIFIE------NLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        70 ~pngia~~~dg~~L-yv~~-~~~~~I~~~~~~~~~~~~~~~~~~------~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ....+++||||.++ ++.. ...++|+.-.+....-+....+..      ........+++-.++.|.+.....
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence            44689999999988 4443 345677776653111121111111      112356789999999988887665

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.54  E-value=5.1  Score=35.38  Aligned_cols=122  Identities=15%  Similarity=0.154  Sum_probs=57.5

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhh------hhhccCCCCceEEEEeCCCCeEEEEecC---ccccceeEEe--c
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYY------LDLVEGEPHGQLLRYDPSSKQVSIVLEG---LYFANGVALS--K   78 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~------~~~~~~~~~g~l~~~~~~~g~~~~~~~~---~~~pngia~~--~   78 (224)
                      ..+-.|+...+.-++.+|..   |+...-+      .++....-..+|..+|-.+.+..+..+-   ...|--|.+.  |
T Consensus       180 ~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P  256 (461)
T PF05694_consen  180 QPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDP  256 (461)
T ss_dssp             ------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SST
T ss_pred             CCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCC
Confidence            34455666666666666653   3322211      1122222233688888877777665532   2445455544  5


Q ss_pred             CCCEEEEEeCCCCeEEEEEcc-CCCcccceEeecc------------C-------CCCCCceEECCCCC-EEEEEecC
Q 046107           79 HGDFVVVCESWKFRCIKHWLK-LGDKRDREIFIEN------------L-------PGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        79 dg~~Lyv~~~~~~~I~~~~~~-~~~~~~~~~~~~~------------~-------~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      +..+=||....+..|++|-.+ ++. -..+.+++.            .       |+.+.+|.+..|++ ||++.+..
T Consensus       257 ~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~  333 (461)
T PF05694_consen  257 DANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH  333 (461)
T ss_dssp             T--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT
T ss_pred             CccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC
Confidence            667789999999999998874 321 112222221            1       35678999998887 99999887

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=92.35  E-value=5.3  Score=32.61  Aligned_cols=130  Identities=12%  Similarity=0.019  Sum_probs=67.5

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .+|.+-.+|...-......+-..--|.|+++|+-..|++++ .++.|+.+|+.... -..+...+ .......+++++||
T Consensus       103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~~-c~~~liPe-~~~~i~sl~v~~dg  179 (311)
T KOG0315|consen  103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGENS-CTHELIPE-DDTSIQSLTVMPDG  179 (311)
T ss_pred             CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCCc-cccccCCC-CCcceeeEEEcCCC
Confidence            45665555654222222222223347999999877788887 46789999985321 11111111 11234677888888


Q ss_pred             CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc-CCCceEEEEEECCCCcEEEEE
Q 046107          127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST-GKGAAAKVVKVSANGSIIREF  187 (224)
Q Consensus       127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~G~~~~~~  187 (224)
                      .+.+|.....+-   ++.+  .+++..   -+.++|+.+. ....|..--+++||+|.+..-
T Consensus       180 sml~a~nnkG~c---yvW~--l~~~~~---~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~  233 (311)
T KOG0315|consen  180 SMLAAANNKGNC---YVWR--LLNHQT---ASELEPVHKFQAHNGHILRCLLSPDVKYLATC  233 (311)
T ss_pred             cEEEEecCCccE---EEEE--ccCCCc---cccceEhhheecccceEEEEEECCCCcEEEee
Confidence            877776655320   0000  011100   0112233221 234456667889999887654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.32  E-value=7.6  Score=36.32  Aligned_cols=134  Identities=14%  Similarity=0.034  Sum_probs=84.8

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .+=+||++..+  +.-.+...-.+-..|+|+|-.+.-|++-+..++|..+.+.+..   +-.|. ++.....-+++-|||
T Consensus       390 KTVRLWh~~~~--~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~-Dl~~lITAvcy~PdG  463 (712)
T KOG0283|consen  390 KTVRLWHPGRK--ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWN-DLRDLITAVCYSPDG  463 (712)
T ss_pred             ccEEeecCCCc--ceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeeh-hhhhhheeEEeccCC
Confidence            35567777643  3333444567778999999555689999999999999986522   22233 345677899999999


Q ss_pred             CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEe--CCCCCc-c-cceeEE
Q 046107          127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFN--DPNAKN-I-SFVTSA  201 (224)
Q Consensus       127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~--~~~g~~-~-~~~t~~  201 (224)
                      ..-|.....                                    |.+..++..| ++....+  ...+++ . +-+|++
T Consensus       464 k~avIGt~~------------------------------------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~  507 (712)
T KOG0283|consen  464 KGAVIGTFN------------------------------------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL  507 (712)
T ss_pred             ceEEEEEec------------------------------------cEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence            865554444                                    5666777654 5544432  222221 1 236766


Q ss_pred             EEE---CCEEEEEeCCCCeEEEeeC
Q 046107          202 LEF---QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       202 ~~~---~g~lyv~~~~~~~i~~~~~  223 (224)
                      -..   -++|.|++.. .+|.+|++
T Consensus       508 Q~~p~~~~~vLVTSnD-SrIRI~d~  531 (712)
T KOG0283|consen  508 QFFPGDPDEVLVTSND-SRIRIYDG  531 (712)
T ss_pred             EecCCCCCeEEEecCC-CceEEEec
Confidence            533   2568888754 67877775

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=92.27  E-value=5.5  Score=32.67  Aligned_cols=119  Identities=13%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                      .-.+-++|...++.......-..-.-|+++|+|+++.+.+ ....|.-++..........    .....-+.+++.-+++
T Consensus        86 dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   86 DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYKIVNEE----QFKFEVNEISWNNSND  160 (313)
T ss_pred             CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccceeehh----cccceeeeeeecCCCC
Confidence            4456666765566665555555566899999998777766 4567777877532211111    1223457788887788


Q ss_pred             EEEEEecCCchhhhhhccChhHHHH--HhhchhhHHhhhhcCCCceEEEEEECCCCcEEEE
Q 046107          128 FWISLIKMNSSAVETVHSSKNRKQL--LEEHPELINQLMSTGKGAAAKVVKVSANGSIIRE  186 (224)
Q Consensus       128 l~va~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~  186 (224)
                      +++...+..  +++ |..||.+.++  +...|.            .=-.+.|||+|+...+
T Consensus       161 ~Fflt~GlG--~v~-ILsypsLkpv~si~AH~s------------nCicI~f~p~GryfA~  206 (313)
T KOG1407|consen  161 LFFLTNGLG--CVE-ILSYPSLKPVQSIKAHPS------------NCICIEFDPDGRYFAT  206 (313)
T ss_pred             EEEEecCCc--eEE-EEeccccccccccccCCc------------ceEEEEECCCCceEee
Confidence            877766632  111 3345544332  222221            1345788888887655

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.01  E-value=1.7  Score=29.37  Aligned_cols=21  Identities=14%  Similarity=0.328  Sum_probs=18.0

Q ss_pred             CCCCceEECCCCC-EEEEEecC
Q 046107          115 GGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus       115 ~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      ..|+||+++++++ |||++...
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~   75 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLA   75 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccC
Confidence            4799999999876 99998776

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=91.95  E-value=8.4  Score=34.08  Aligned_cols=104  Identities=12%  Similarity=0.114  Sum_probs=63.6

Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhh
Q 046107           76 LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEE  155 (224)
Q Consensus        76 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~  155 (224)
                      ..|..+....+....+.|..+++..+.  ..-.|.+. ..-...+++.++|++..+..-.                    
T Consensus       417 ~n~~~~~~l~sas~dstV~lwdv~~gv--~i~~f~kH-~~pVysvafS~~g~ylAsGs~d--------------------  473 (524)
T KOG0273|consen  417 SNPNMNLMLASASFDSTVKLWDVESGV--PIHTLMKH-QEPVYSVAFSPNGRYLASGSLD--------------------  473 (524)
T ss_pred             CCCcCCceEEEeecCCeEEEEEccCCc--eeEeeccC-CCceEEEEecCCCcEEEecCCC--------------------
Confidence            334334345555566777778775321  01112111 1123789999999876654444                    


Q ss_pred             chhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          156 HPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                                      +.|...+ +.|++.+.+.+..+     +..+++. +|+..-++.....+.++++
T Consensus       474 ----------------g~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  474 ----------------GCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ----------------CeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                            5666666 45888888876433     5666654 6788888888888888876

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=91.75  E-value=6.9  Score=32.63  Aligned_cols=90  Identities=14%  Similarity=0.141  Sum_probs=58.3

Q ss_pred             hccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc
Q 046107           42 LVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN  119 (224)
Q Consensus        42 ~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~  119 (224)
                      ++...++.+...+|..+|+......+ ..---++.++| +++ .||+-.-...-..+|+..+  .-.+.|.. -.+-.+.
T Consensus       159 ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~g-hesDINs  234 (343)
T KOG0286|consen  159 ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEG-HESDINS  234 (343)
T ss_pred             eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeecc-cccccce
Confidence            34455666666777666665544444 34446889999 887 9999877777777777532  23445542 2234677


Q ss_pred             eEECCCCCEEEEEecC
Q 046107          120 INLAPDGSFWISLIKM  135 (224)
Q Consensus       120 i~~d~dG~l~va~~~~  135 (224)
                      +.+-|+|.-+++....
T Consensus       235 v~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  235 VRFFPSGDAFATGSDD  250 (343)
T ss_pred             EEEccCCCeeeecCCC
Confidence            7888888877776665

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.67  E-value=7.6  Score=33.73  Aligned_cols=69  Identities=14%  Similarity=0.085  Sum_probs=40.1

Q ss_pred             cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee--cc--CCCCCCceEE--CCC--CCEEEEEecC
Q 046107           66 EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI--EN--LPGGPDNINL--APD--GSFWISLIKM  135 (224)
Q Consensus        66 ~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~--~~--~~~~p~~i~~--d~d--G~l~va~~~~  135 (224)
                      .....+.|++++....+||+++-. ..||+|..+.......+.+.  ..  +..-..||++  ..+  |.|.+++.+.
T Consensus       205 ~~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~  281 (381)
T PF02333_consen  205 KVGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD  281 (381)
T ss_dssp             E-SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred             cCCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence            344578899999988899999965 68999998632111222221  11  2234567777  334  4466666555

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=91.66  E-value=7.4  Score=32.80  Aligned_cols=67  Identities=13%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCC-CcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           66 EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLG-DKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        66 ~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +....-|-+.|+|.+. |.++.+..+.|-.||..-. .....++|.+-  .....|.+-|.|.+.+.....
T Consensus       170 DH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~--~~vrsiSfHPsGefllvgTdH  237 (430)
T KOG0640|consen  170 DHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDT--EPVRSISFHPSGEFLLVGTDH  237 (430)
T ss_pred             hccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhcc--ceeeeEeecCCCceEEEecCC
Confidence            4455668899999875 8899999999999998532 11223444432  234789999999877765554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=91.60  E-value=0.6  Score=39.75  Aligned_cols=84  Identities=10%  Similarity=0.053  Sum_probs=53.6

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCccc-ceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRD-REIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      ++.|+.+|...+....-....-.+|+|+|+| +.+.|++..-...+|-||+.-  +.. ..++.+. ....-++.+.|-|
T Consensus       209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~--l~~p~~v~~dh-vsAV~dVdfsptG  284 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN--LSRPLNVHKDH-VSAVMDVDFSPTG  284 (433)
T ss_pred             CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhh--hcccchhhccc-ceeEEEeccCCCc
Confidence            5566677754333221122345789999999 568999999999999999863  111 2333321 2234567777878


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      .=+|+....
T Consensus       285 ~EfvsgsyD  293 (433)
T KOG0268|consen  285 QEFVSGSYD  293 (433)
T ss_pred             chhcccccc
Confidence            777776666

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=91.59  E-value=0.18  Score=28.43  Aligned_cols=20  Identities=10%  Similarity=0.248  Sum_probs=17.9

Q ss_pred             CCCceEECCCCCEEEEEecC
Q 046107          116 GPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus       116 ~p~~i~~d~dG~l~va~~~~  135 (224)
                      .+.+|++|++|++|++....
T Consensus        14 ~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             eEEEEEECCCCCEEEEEeec
Confidence            58999999999999998765

SBBP stands for Seven Bladed Beta Propeller.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.21  E-value=6.7  Score=36.08  Aligned_cols=126  Identities=13%  Similarity=0.051  Sum_probs=71.6

Q ss_pred             CceEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeecc-CCCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGL--YFANGVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIEN-LPGGPD  118 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~--~~pngia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~  118 (224)
                      -.++-+|||.+.+|+.+..-.  ..-.|++.- +| .||+.-..      -..+.+|++...   ..+..... .+..--
T Consensus       395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~-~g-~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~  469 (571)
T KOG4441|consen  395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL-GG-KLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPMNTRRSGF  469 (571)
T ss_pred             cccEEEecCCCCcccccCCCCcceeeeEEEEE-CC-EEEEEcCcCCCccccceEEEEcCCCC---ceeecCCcccccccc
Confidence            346889999988888765332  222344443 44 59998752      256888988642   22222111 111223


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeC-CCCCcccc
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFND-PNAKNISF  197 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~-~~g~~~~~  197 (224)
                      ++++- +|.||+..+......                               ...|-++||.......+.. +..   ..
T Consensus       470 g~a~~-~~~iYvvGG~~~~~~-------------------------------~~~VE~ydp~~~~W~~v~~m~~~---rs  514 (571)
T KOG4441|consen  470 GVAVL-NGKIYVVGGFDGTSA-------------------------------LSSVERYDPETNQWTMVAPMTSP---RS  514 (571)
T ss_pred             eEEEE-CCEEEEECCccCCCc-------------------------------cceEEEEcCCCCceeEcccCccc---cc
Confidence            45553 688999877652110                               1468999998654444422 212   12


Q ss_pred             eeEEEEECCEEEEEeC
Q 046107          198 VTSALEFQGNLYLASI  213 (224)
Q Consensus       198 ~t~~~~~~g~lyv~~~  213 (224)
                      ...++..++.+|+..-
T Consensus       515 ~~g~~~~~~~ly~vGG  530 (571)
T KOG4441|consen  515 AVGVVVLGGKLYAVGG  530 (571)
T ss_pred             cccEEEECCEEEEEec
Confidence            3345678889998764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.16  E-value=9.2  Score=35.20  Aligned_cols=128  Identities=14%  Similarity=0.057  Sum_probs=69.7

Q ss_pred             CceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCCC-----CeEEEEEccCCCcccceEeeccCC-CCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESWK-----FRCIKHWLKLGDKRDREIFIENLP-GGPD  118 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~~-----~~I~~~~~~~~~~~~~~~~~~~~~-~~p~  118 (224)
                      ...+++||+.+++|..++ .+..+   -|++.- +| .||+.-...     ..|-+|++...   .......... ..--
T Consensus       348 l~~ve~YD~~~~~W~~~a-~M~~~R~~~~v~~l-~g-~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~~r~~~  421 (571)
T KOG4441|consen  348 LSSVERYDPRTNQWTPVA-PMNTKRSDFGVAVL-DG-KLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLTRRSGH  421 (571)
T ss_pred             cceEEEecCCCCceeccC-CccCccccceeEEE-CC-EEEEEeccccccccccEEEecCCCC---cccccCCCCcceeee
Confidence            457999999988887643 22222   244443 44 599876433     35888888642   1222221111 1112


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEE-eCCCCCcccc
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREF-NDPNAKNISF  197 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~-~~~~g~~~~~  197 (224)
                      +.+. -+|.+|+..+...+.                              ..-..|.++||.-+.-... +.+..+   .
T Consensus       422 gv~~-~~g~iYi~GG~~~~~------------------------------~~l~sve~YDP~t~~W~~~~~M~~~R---~  467 (571)
T KOG4441|consen  422 GVAV-LGGKLYIIGGGDGSS------------------------------NCLNSVECYDPETNTWTLIAPMNTRR---S  467 (571)
T ss_pred             EEEE-ECCEEEEEcCcCCCc------------------------------cccceEEEEcCCCCceeecCCccccc---c
Confidence            2333 378999998866422                              0115789999974332222 222211   1


Q ss_pred             eeEEEEECCEEEEEeCCC
Q 046107          198 VTSALEFQGNLYLASINS  215 (224)
Q Consensus       198 ~t~~~~~~g~lyv~~~~~  215 (224)
                      -..++..++.||+-.-..
T Consensus       468 ~~g~a~~~~~iYvvGG~~  485 (571)
T KOG4441|consen  468 GFGVAVLNGKIYVVGGFD  485 (571)
T ss_pred             cceEEEECCEEEEECCcc
Confidence            223556788998876543

>PHA02713 hypothetical protein; Provisional

Probab=91.11  E-value=9.7  Score=34.89  Aligned_cols=126  Identities=8%  Similarity=-0.031  Sum_probs=64.7

Q ss_pred             ceEEEEeCCCCeEEEEecCcc--ccceeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeeccCCCCCCce
Q 046107           49 GQLLRYDPSSKQVSIVLEGLY--FANGVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIENLPGGPDNI  120 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~--~pngia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i  120 (224)
                      ..++++|+.++++..+..-..  ...+++.- ++ .|||.-..      ...+++|++...   ............-..-
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l-~~-~IYviGG~~~~~~~~~~v~~Yd~~~n---~W~~~~~m~~~R~~~~  346 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIV-DN-EIIIAGGYNFNNPSLNKVYKINIENK---IHVELPPMIKNRCRFS  346 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEE-CC-EEEEEcCCCCCCCccceEEEEECCCC---eEeeCCCCcchhhcee
Confidence            357899998788776542211  11244443 44 59998542      246889998642   1211111111111122


Q ss_pred             EECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCc-EEEEEeCCCCCccccee
Q 046107          121 NLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGS-IIREFNDPNAKNISFVT  199 (224)
Q Consensus       121 ~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~-~~~~~~~~~g~~~~~~t  199 (224)
                      +..-+|.+|+-.+.....                               ....|.++||.-+ +...-+.|...  ... 
T Consensus       347 ~~~~~g~IYviGG~~~~~-------------------------------~~~sve~Ydp~~~~W~~~~~mp~~r--~~~-  392 (557)
T PHA02713        347 LAVIDDTIYAIGGQNGTN-------------------------------VERTIECYTMGDDKWKMLPDMPIAL--SSY-  392 (557)
T ss_pred             EEEECCEEEEECCcCCCC-------------------------------CCceEEEEECCCCeEEECCCCCccc--ccc-
Confidence            233468999987654210                               0146899998743 33222222221  122 


Q ss_pred             EEEEECCEEEEEeC
Q 046107          200 SALEFQGNLYLASI  213 (224)
Q Consensus       200 ~~~~~~g~lyv~~~  213 (224)
                      .++..+|+||+-.-
T Consensus       393 ~~~~~~g~IYviGG  406 (557)
T PHA02713        393 GMCVLDQYIYIIGG  406 (557)
T ss_pred             cEEEECCEEEEEeC
Confidence            33456899999653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.09  E-value=6.3  Score=34.81  Aligned_cols=85  Identities=12%  Similarity=-0.024  Sum_probs=46.3

Q ss_pred             CceEEEEeCCCCeEEEEe----------cCcccc-ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVL----------EGLYFA-NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGG  116 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~----------~~~~~p-ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~  116 (224)
                      +|+|+..--.+|.++.+.          .....| +-+.|+|+++.++++.+....+.-+++++..   .+.-+.+-..+
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDY  155 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDY  155 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcce
Confidence            455555444445555432          233445 5778999888888887765555555555422   11111122234


Q ss_pred             CCceEECC-CCCEEEEEecC
Q 046107          117 PDNINLAP-DGSFWISLIKM  135 (224)
Q Consensus       117 p~~i~~d~-dG~l~va~~~~  135 (224)
                      ....++-+ .+.+.++.++.
T Consensus       156 VR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             eEeeccccCCCeEEEecCCC
Confidence            44455544 45688887776

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=91.03  E-value=6.1  Score=35.42  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=53.1

Q ss_pred             CCCceEEEEeCCCCeEE------EEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC-CCC-
Q 046107           46 EPHGQLLRYDPSSKQVS------IVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP-GGP-  117 (224)
Q Consensus        46 ~~~g~l~~~~~~~g~~~------~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-~~p-  117 (224)
                      -.+|+|-.|+..+-.+.      ...........|+||.||+ .+.+....+.+-.|++...+ ....++. +++ .+| 
T Consensus       336 c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~k-kpL~~~t-gL~t~~~~  412 (641)
T KOG0772|consen  336 CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFK-KPLNVRT-GLPTPFPG  412 (641)
T ss_pred             ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccc-cchhhhc-CCCccCCC
Confidence            34677766663211111      1112334567899999998 66777788888889887521 1122232 222 233 


Q ss_pred             CceEECCCCCEEEEEecC
Q 046107          118 DNINLAPDGSFWISLIKM  135 (224)
Q Consensus       118 ~~i~~d~dG~l~va~~~~  135 (224)
                      .+.++.|+..|.++....
T Consensus       413 tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  413 TDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             CccccCCCceEEEecccc
Confidence            789999999988886654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.84  E-value=7.6  Score=31.48  Aligned_cols=85  Identities=13%  Similarity=0.003  Sum_probs=53.4

Q ss_pred             CCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc-eEEC
Q 046107           46 EPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN-INLA  123 (224)
Q Consensus        46 ~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~-i~~d  123 (224)
                      .++-.++.+|-++|++-.- ......-|.++|..+.. +.++-+....+..||-........+++-+    .-|+ +.+|
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQilde----a~D~V~Si~  152 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDE----AKDGVSSID  152 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhh----hcCceeEEE
Confidence            4455788899888876654 44577789999998764 88888888899988865433333344322    1122 2334


Q ss_pred             CCCCEEEEEecC
Q 046107          124 PDGSFWISLIKM  135 (224)
Q Consensus       124 ~dG~l~va~~~~  135 (224)
                      -.+...++....
T Consensus       153 v~~heIvaGS~D  164 (307)
T KOG0316|consen  153 VAEHEIVAGSVD  164 (307)
T ss_pred             ecccEEEeeccC
Confidence            445555554444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=90.67  E-value=10  Score=32.55  Aligned_cols=64  Identities=6%  Similarity=0.007  Sum_probs=37.2

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...-.-+.|+.||. +..+--.+++|..+..+.+.  ....+. ........|.+-|.+.++++....
T Consensus       106 KDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~--~~~~~~-~e~~dieWl~WHp~a~illAG~~D  169 (399)
T KOG0296|consen  106 KDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGG--EQWKLD-QEVEDIEWLKWHPRAHILLAGSTD  169 (399)
T ss_pred             CCceEEEEEccCce-EEEecCCCccEEEEEcccCc--eEEEee-cccCceEEEEecccccEEEeecCC
Confidence            34456789999996 66776788999999886421  111221 111233455555555555554444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=90.64  E-value=9.1  Score=32.02  Aligned_cols=76  Identities=12%  Similarity=-0.004  Sum_probs=45.3

Q ss_pred             eeeccccccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc-ceeEEecCCC
Q 046107            4 IHLCHLIRFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA-NGVALSKHGD   81 (224)
Q Consensus         4 ~~~~~~~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p-ngia~~~dg~   81 (224)
                      .++..|-....+|.+.+.+ .|.++-.                  +|.|-.|+.......... ....| --.+|.++ .
T Consensus         7 ~l~npP~d~IS~v~f~~~~~~LLvssW------------------DgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~   66 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSSDLLVSSW------------------DGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-S   66 (323)
T ss_pred             ccCCCChhceeeEEEcCcCCcEEEEec------------------cCcEEEEeccchhhhhhe-ecCCceeeeeccCC-c
Confidence            4566667777788888654 5666641                  566766775432222111 12233 24566654 4


Q ss_pred             EEEEEeCCCCeEEEEEccC
Q 046107           82 FVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .+|+.. ..++|.++|+++
T Consensus        67 ~~~~G~-~dg~vr~~Dln~   84 (323)
T KOG1036|consen   67 TIVTGG-LDGQVRRYDLNT   84 (323)
T ss_pred             eEEEec-cCceEEEEEecC
Confidence            577776 468999999975

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=90.63  E-value=9.4  Score=32.16  Aligned_cols=85  Identities=12%  Similarity=0.181  Sum_probs=55.2

Q ss_pred             ccCCCCceEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc
Q 046107           43 VEGEPHGQLLRYDPSSKQVSIVL---EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN  119 (224)
Q Consensus        43 ~~~~~~g~l~~~~~~~g~~~~~~---~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~  119 (224)
                      +....+|.+..++.  +.++.+.   .....-|+|+++|.|+ |-++-...+.+..+++-.+.    .-++-.+...+..
T Consensus       101 lS~sdDG~i~iw~~--~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr----~a~v~~L~~~at~  173 (362)
T KOG0294|consen  101 LSGSDDGHIIIWRV--GSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR----VAFVLNLKNKATL  173 (362)
T ss_pred             eeecCCCcEEEEEc--CCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc----cceeeccCCccee
Confidence            34455676666663  3455442   2334489999999997 88888888888888874211    1222234456778


Q ss_pred             eEECCCCCEEEEEec
Q 046107          120 INLAPDGSFWISLIK  134 (224)
Q Consensus       120 i~~d~dG~l~va~~~  134 (224)
                      +.+++.|.-|+-...
T Consensus       174 v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  174 VSWSPQGDHFVVSGR  188 (362)
T ss_pred             eEEcCCCCEEEEEec
Confidence            999999985555443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.54  E-value=13  Score=33.46  Aligned_cols=143  Identities=15%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             CceEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC----CCCceEE
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG----GPDNINL  122 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~----~p~~i~~  122 (224)
                      ....+-+|.+ |.+........... .+..-++|.+++.+.   +.+..++..|...   .. . ..++    .=-.+..
T Consensus       127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~v~---~~-~-~l~~~~~~~HHD~~~  197 (477)
T PF05935_consen  127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGKVI---WE-Y-DLPGGYYDFHHDIDE  197 (477)
T ss_dssp             EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT--EE---EE-E-E--TTEE-B-S-EEE
T ss_pred             CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCCEE---Ee-e-ecCCcccccccccEE
Confidence            4568888986 77765443322222 267778897444443   7899999876311   11 1 1222    1257788


Q ss_pred             CCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeC-----CCC-----
Q 046107          123 APDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFND-----PNA-----  192 (224)
Q Consensus       123 d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~-----~~g-----  192 (224)
                      .++|++++..........      +.                 ....-...|+++|+.|+++..+..     +..     
T Consensus       198 l~nGn~L~l~~~~~~~~~------~~-----------------~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~  254 (477)
T PF05935_consen  198 LPNGNLLILASETKYVDE------DK-----------------DVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLK  254 (477)
T ss_dssp             -TTS-EEEEEEETTEE-T------S------------------EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGG
T ss_pred             CCCCCEEEEEeecccccC------CC-----------------CccEecCEEEEECCCCCEEEEEehHHhCCcccccccc
Confidence            899997776663210000      00                 000011579999999999888632     111     


Q ss_pred             -------------CcccceeEEEEE--CCEEEEEeCCCCeEEEee
Q 046107          193 -------------KNISFVTSALEF--QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       193 -------------~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~  222 (224)
                                   ...-...++..+  ++.|.+++...+.|.+++
T Consensus       255 ~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id  299 (477)
T PF05935_consen  255 PYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID  299 (477)
T ss_dssp             T--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred             cccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence                         011123344433  699999999999999987

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=90.24  E-value=11  Score=32.46  Aligned_cols=133  Identities=14%  Similarity=0.024  Sum_probs=78.3

Q ss_pred             eEEEEeCCCCeEEEE----ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           50 QLLRYDPSSKQVSIV----LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~----~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .++.+.+.+|.+..-    ...-..-.++++||.++.+|.+.+-.+.|..+|+..+. ....++..--.+-.+=|.+..+
T Consensus       235 ~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-~~~~~~~kAh~sDVNVISWnr~  313 (440)
T KOG0302|consen  235 GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-KKAAVSTKAHNSDVNVISWNRR  313 (440)
T ss_pred             ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-ccceeEeeccCCceeeEEccCC
Confidence            344444444554421    22233445899999888899999999999999986421 2233333212223344555554


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC----CCCcEEEEEeCCCCCcccceeEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS----ANGSIIREFNDPNAKNISFVTSA  201 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~G~~~~~~~~~~g~~~~~~t~~  201 (224)
                      =.+.++....                                    |.+-..|    ..|+++..+....+    .+|++
T Consensus       314 ~~lLasG~Dd------------------------------------Gt~~iwDLR~~~~~~pVA~fk~Hk~----pItsi  353 (440)
T KOG0302|consen  314 EPLLASGGDD------------------------------------GTLSIWDLRQFKSGQPVATFKYHKA----PITSI  353 (440)
T ss_pred             cceeeecCCC------------------------------------ceEEEEEhhhccCCCcceeEEeccC----CeeEE
Confidence            4433333332                                    2332222    24677777765543    47777


Q ss_pred             EEE--CCEEEEEeCCCCeEEEeeC
Q 046107          202 LEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       202 ~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                      ..+  +..++.++-..+.|..-+|
T Consensus       354 eW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  354 EWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             EeccccCceEEeccCCCcEEEEEe
Confidence            644  6888888888888887765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.08  E-value=5.7  Score=38.23  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             ceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeE
Q 046107           15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRC   93 (224)
Q Consensus        15 ~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I   93 (224)
                      ||...|++.+.++-.                 -+++|..++..+-+.... ......+-|+.|||-|+ -+.+.+..+.|
T Consensus       134 Dv~Wsp~~~~lvS~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrti  195 (942)
T KOG0973|consen  134 DVNWSPDDSLLVSVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTL  195 (942)
T ss_pred             eeccCCCccEEEEec-----------------ccceEEEEccccceeeeeeecccccccceEECCccC-eeeeecCCceE
Confidence            666777777777642                 367888888765433333 34456678999999997 55666777777


Q ss_pred             EEEEccCCCcccceE----eecc-CCCCCCceEECCCCCEEEEEecCCc--hhhhhhccCh
Q 046107           94 IKHWLKLGDKRDREI----FIEN-LPGGPDNINLAPDGSFWISLIKMNS--SAVETVHSSK  147 (224)
Q Consensus        94 ~~~~~~~~~~~~~~~----~~~~-~~~~p~~i~~d~dG~l~va~~~~~~--~~~~~~~~~p  147 (224)
                      ..|+...  .+-.+.    |-+. ...+..-+.+.|||.+.++....+.  +++..+.+..
T Consensus       196 kvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t  254 (942)
T KOG0973|consen  196 KVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT  254 (942)
T ss_pred             EEEEccc--ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence            7776543  111111    1110 1235577888999999988776553  3444444433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.96  E-value=11  Score=31.79  Aligned_cols=62  Identities=13%  Similarity=-0.016  Sum_probs=33.7

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec----c-CCCC-CCceEECCCCCEEEEEecC
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE----N-LPGG-PDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~----~-~~~~-p~~i~~d~dG~l~va~~~~  135 (224)
                      ......|.++||+. ||+.. ..+.|..-+..+    ..+.|.+    . ..++ --+++..+++.+|++.+.+
T Consensus       186 ~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~----~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  186 SRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPD----DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             SS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TT----EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cceehhceecCCCC-EEEEe-CCcEEEEccCCC----CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            34456889999986 87776 456666665111    1122322    1 1111 3467888999999987765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=89.56  E-value=6.1  Score=33.40  Aligned_cols=59  Identities=17%  Similarity=0.090  Sum_probs=39.9

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECCCCC
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGS  127 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~  127 (224)
                      ...-.+++|+.||+ -+++....+.|..|+.++-...+.+.+-.. ..+.|.-+++.+|-.
T Consensus        86 ~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~  145 (420)
T KOG2096|consen   86 KKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK  145 (420)
T ss_pred             CCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc
Confidence            44567999999998 556666778888888875322222222112 345899999999976

>PHA03098 kelch-like protein; Provisional

Probab=89.31  E-value=16  Score=32.97  Aligned_cols=137  Identities=12%  Similarity=-0.014  Sum_probs=67.8

Q ss_pred             ceEEEEeCCCCeEEEEecCccccc---eeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeeccCCC-CCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFAN---GVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIENLPG-GPD  118 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~pn---gia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~  118 (224)
                      ..++++|+.+++|+...+ +..|.   ..+ .-++ .|||.-..      .+.+.+|++...   ...... ..+. .-.
T Consensus       358 ~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~-~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~-~~p~~r~~  430 (534)
T PHA03098        358 NTVESWKPGESKWREEPP-LIFPRYNPCVV-NVNN-LIYVIGGISKNDELLKTVECFSLNTN---KWSKGS-PLPISHYG  430 (534)
T ss_pred             ceEEEEcCCCCceeeCCC-cCcCCccceEE-EECC-EEEEECCcCCCCcccceEEEEeCCCC---eeeecC-CCCccccC
Confidence            357788887777775432 22222   222 2344 59987431      256889998642   122211 1111 111


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccc
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISF  197 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~  197 (224)
                      ..++--+|.+|+..+.....                            .......+.++|+.- ++...-..+...   .
T Consensus       431 ~~~~~~~~~iyv~GG~~~~~----------------------------~~~~~~~v~~yd~~~~~W~~~~~~~~~r---~  479 (534)
T PHA03098        431 GCAIYHDGKIYVIGGISYID----------------------------NIKVYNIVESYNPVTNKWTELSSLNFPR---I  479 (534)
T ss_pred             ceEEEECCEEEEECCccCCC----------------------------CCcccceEEEecCCCCceeeCCCCCccc---c
Confidence            22333467899886643210                            000114689999874 443321112111   1


Q ss_pred             eeEEEEECCEEEEEeCC-----CCeEEEeeC
Q 046107          198 VTSALEFQGNLYLASIN-----SNFIGKLPL  223 (224)
Q Consensus       198 ~t~~~~~~g~lyv~~~~-----~~~i~~~~~  223 (224)
                      ...++..+++||+-.-.     .+.|.+|+.
T Consensus       480 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        480 NASLCIFNNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             cceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence            22334458899986643     245666653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=89.23  E-value=3.7  Score=39.48  Aligned_cols=62  Identities=15%  Similarity=0.066  Sum_probs=48.1

Q ss_pred             ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCc
Q 046107           72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNS  137 (224)
Q Consensus        72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~  137 (224)
                      ..++|+||+. ++++-+..+.|..|+...  +...+++- +-.+.+-|+.+||-|.++.+....++
T Consensus       133 ~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrt  194 (942)
T KOG0973|consen  133 LDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRT  194 (942)
T ss_pred             ceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeee-cccccccceEECCccCeeeeecCCce
Confidence            3678999986 888889999999998754  23334433 33467899999999999999888764

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=89.16  E-value=0.42  Score=23.87  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=13.8

Q ss_pred             CCCceEECCCCCEEEEEe
Q 046107          116 GPDNINLAPDGSFWISLI  133 (224)
Q Consensus       116 ~p~~i~~d~dG~l~va~~  133 (224)
                      ....|..|++|++|++..
T Consensus         6 ~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    6 NIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             CEEEEEE-TTSCEEEEET
T ss_pred             eEEEEEEcCCcCEEEEeC
Confidence            346788999999999864

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=88.63  E-value=11  Score=31.84  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=56.5

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccc-cceeEEecCC-CEEEEE
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYF-ANGVALSKHG-DFVVVC   86 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~-pngia~~~dg-~~Lyv~   86 (224)
                      .+.|+..+.+||.-.++-++                 +|+|-.++.++++.....  .+-.. .|.+.+-|.. ..+.|+
T Consensus       349 Syvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  349 SYVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             ccccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence            45678888888876665433                 677777776654432211  11122 2455555533 235555


Q ss_pred             eCCCCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      + .++.|+..+++|.   -.+.|..+  ..|..-+.++.++|.+..+.+..
T Consensus       412 N-rsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED  458 (508)
T KOG0275|consen  412 N-RSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGED  458 (508)
T ss_pred             c-CCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccC
Confidence            5 4567888887762   12333322  12334566778888855555544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=88.30  E-value=2.7  Score=36.45  Aligned_cols=111  Identities=16%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCC
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHG   80 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg   80 (224)
                      ||.++...-....++++.++...|+|-+                 .+|+|-.+|..-.+-+.+..+ ..-+..+.++|..
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF~t~S-----------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k  234 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKFLTCS-----------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK  234 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCceeEEec-----------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence            3444444445667899988888887753                 367776677543333333333 5567799999987


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107           81 DFVVVCESWKFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        81 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      . |.++-+..+-|-.+|+..+   .  .++.-  -.-..-++.+.++|++..+....
T Consensus       235 g-LiasgskDnlVKlWDprSg---~--cl~tlh~HKntVl~~~f~~n~N~Llt~skD  285 (464)
T KOG0284|consen  235 G-LIASGSKDNLVKLWDPRSG---S--CLATLHGHKNTVLAVKFNPNGNWLLTGSKD  285 (464)
T ss_pred             c-eeEEccCCceeEeecCCCc---c--hhhhhhhccceEEEEEEcCCCCeeEEccCC
Confidence            6 7676666676666777532   1  11110  01134677888889877776665

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.30  E-value=12  Score=30.36  Aligned_cols=80  Identities=20%  Similarity=0.099  Sum_probs=48.6

Q ss_pred             CceEEEEeCCCCeEEEEecC----ccccceeEEecCCCEEEEEe--CCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107           48 HGQLLRYDPSSKQVSIVLEG----LYFANGVALSKHGDFVVVCE--SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN  121 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~----~~~pngia~~~dg~~Lyv~~--~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~  121 (224)
                      +|.|++++..  ..+.+...    ...+...++++||+.+.+..  .....++.....+.    ...+..  ......-.
T Consensus         1 dG~l~~~~~~--~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----~~~~~~--g~~l~~PS   72 (253)
T PF10647_consen    1 DGQLVRVSGG--GVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----VRPVLT--GGSLTRPS   72 (253)
T ss_pred             CCcEEEecCC--ceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----ceeecc--CCcccccc
Confidence            3667776654  23333222    22567899999998775544  45667887766542    222221  12344557


Q ss_pred             ECCCCCEEEEEecC
Q 046107          122 LAPDGSFWISLIKM  135 (224)
Q Consensus       122 ~d~dG~l~va~~~~  135 (224)
                      +|++|.+|+.....
T Consensus        73 ~d~~g~~W~v~~~~   86 (253)
T PF10647_consen   73 WDPDGWVWTVDDGS   86 (253)
T ss_pred             ccCCCCEEEEEcCC
Confidence            89999999998755

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=87.88  E-value=2.6  Score=36.59  Aligned_cols=29  Identities=10%  Similarity=-0.017  Sum_probs=26.0

Q ss_pred             ceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           72 NGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      ..|-+|-|.++|||+....+-|++|++.+
T Consensus       315 TDilISmDDRFLYvs~WLHGDirQYdIsD  343 (476)
T KOG0918|consen  315 TDILISLDDRFLYVSNWLHGDIRQYDISD  343 (476)
T ss_pred             heeEEeecCcEEEEEeeeecceeeeccCC
Confidence            46778889999999999999999999975

>PHA02790 Kelch-like protein; Provisional

Probab=87.54  E-value=19  Score=32.34  Aligned_cols=82  Identities=5%  Similarity=-0.083  Sum_probs=42.8

Q ss_pred             CceEEEEeCCCCeEEEEecCcccc--ceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCC-CCCceEE
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFA--NGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPG-GPDNINL  122 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~p--ngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~  122 (224)
                      ...++++|+.++++..+.+ +..|  +.-+..-+| .||+.-..  ...+.+|++...   ...... ..+. .-...++
T Consensus       286 ~~~v~~Ydp~~~~W~~~~~-m~~~r~~~~~v~~~~-~iYviGG~~~~~sve~ydp~~n---~W~~~~-~l~~~r~~~~~~  359 (480)
T PHA02790        286 HNNAIAVNYISNNWIPIPP-MNSPRLYASGVPANN-KLYVVGGLPNPTSVERWFHGDA---AWVNMP-SLLKPRCNPAVA  359 (480)
T ss_pred             CCeEEEEECCCCEEEECCC-CCchhhcceEEEECC-EEEEECCcCCCCceEEEECCCC---eEEECC-CCCCCCcccEEE
Confidence            3468999998777776542 2222  222223355 59988642  246888887431   122111 1221 1122233


Q ss_pred             CCCCCEEEEEecC
Q 046107          123 APDGSFWISLIKM  135 (224)
Q Consensus       123 d~dG~l~va~~~~  135 (224)
                      .-+|.||+..+..
T Consensus       360 ~~~g~IYviGG~~  372 (480)
T PHA02790        360 SINNVIYVIGGHS  372 (480)
T ss_pred             EECCEEEEecCcC
Confidence            3478999876643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=87.53  E-value=20  Score=31.74  Aligned_cols=68  Identities=16%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCe
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      +.++..++|.+.+.-                 .-.|.||.|..++|..-.+... .+...-|.++-||. .+++.+..+.
T Consensus        85 ~al~s~n~G~~l~ag-----------------~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~  146 (476)
T KOG0646|consen   85 HALASSNLGYFLLAG-----------------TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGA  146 (476)
T ss_pred             eeeecCCCceEEEee-----------------cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-EEEecCCCcc
Confidence            455556677666652                 1256777777777764433333 34456889999997 8899999999


Q ss_pred             EEEEEcc
Q 046107           93 CIKHWLK   99 (224)
Q Consensus        93 I~~~~~~   99 (224)
                      |..|.+.
T Consensus       147 V~vW~l~  153 (476)
T KOG0646|consen  147 VLVWLLT  153 (476)
T ss_pred             EEEEEEE
Confidence            9998864

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=87.48  E-value=16  Score=30.66  Aligned_cols=29  Identities=17%  Similarity=0.060  Sum_probs=24.8

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .|+|...++|+ ++|+....+.|++++..+
T Consensus       146 iNsV~~~~~G~-yLiS~R~~~~i~~I~~~t  174 (299)
T PF14269_consen  146 INSVDKDDDGD-YLISSRNTSTIYKIDPST  174 (299)
T ss_pred             eeeeeecCCcc-EEEEecccCEEEEEECCC
Confidence            47888889997 779999999999999764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=87.30  E-value=18  Score=31.07  Aligned_cols=135  Identities=10%  Similarity=0.067  Sum_probs=75.0

Q ss_pred             CCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCC-CceEECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGP-DNINLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~  124 (224)
                      ..|.|..+..++|..+.... ......=+.++|.+. ++.+-+..+.||.|.+...  +..+++...  ..| .-=.+-|
T Consensus       126 msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~Gh--~~~ct~G~f~p  200 (399)
T KOG0296|consen  126 MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSGH--NSPCTCGEFIP  200 (399)
T ss_pred             CCccEEEEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecCC--CCCcccccccC
Confidence            45667666666554443322 222223357889775 7777778899999998531  345565421  111 2223446


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCc-----ccce
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKN-----ISFV  198 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~-----~~~~  198 (224)
                      +|...++....                                    +.|...++. |.++-.+...++..     ++..
T Consensus       201 dGKr~~tgy~d------------------------------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~  244 (399)
T KOG0296|consen  201 DGKRILTGYDD------------------------------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLA  244 (399)
T ss_pred             CCceEEEEecC------------------------------------ceEEEEecCCCceeEEecccccCcCCccccccc
Confidence            78766665555                                    677778865 76665554222211     1111


Q ss_pred             eEE---EEECCEEEEEeCCCCeEEEee
Q 046107          199 TSA---LEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       199 t~~---~~~~g~lyv~~~~~~~i~~~~  222 (224)
                      +..   +..++.+++.+.....|..+.
T Consensus       245 ~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  245 GSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             cceeEeccCCccEEEEccccceEEEec
Confidence            222   233577777777776666554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=87.10  E-value=5.9  Score=33.64  Aligned_cols=92  Identities=12%  Similarity=0.185  Sum_probs=55.9

Q ss_pred             CCceEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .++.|..++...-++.- +..+..+...+.+||||+.|..+....-+|.++.+...    ....+........|+++.+|
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----~~~~~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----KGYLLPHPKTNVKGYAFHPD  144 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----eeEEecccccCceeEEECCC
Confidence            35555555543223332 23455566788999999999988888889999988642    22333222234589999999


Q ss_pred             CCEEEEEecCCchhhhhhc
Q 046107          126 GSFWISLIKMNSSAVETVH  144 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~  144 (224)
                      |++-.- ...+ -+.++++
T Consensus       145 g~f~ai-~sRr-DCkdyv~  161 (447)
T KOG4497|consen  145 GQFCAI-LSRR-DCKDYVQ  161 (447)
T ss_pred             Cceeee-eecc-cHHHHHH
Confidence            985432 2222 3455544

>TIGR02608 delta_60_rpt delta-60 repeat domain

Probab=86.42  E-value=1.9  Score=26.48  Aligned_cols=42  Identities=21%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe
Q 046107          118 DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN  188 (224)
Q Consensus       118 ~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~  188 (224)
                      ..+++.+||+|+++....+..                             ......|.|+++||.+...+.
T Consensus         4 ~~~~~q~DGkIlv~G~~~~~~-----------------------------~~~~~~l~Rln~DGsLDttFg   45 (55)
T TIGR02608         4 YAVAVQSDGKILVAGYVDNSS-----------------------------GNNDFVLARLNADGSLDTTFG   45 (55)
T ss_pred             EEEEECCCCcEEEEEEeecCC-----------------------------CcccEEEEEECCCCCccCCcC
Confidence            568899999999998654210                             011167999999999988873

This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=86.40  E-value=14  Score=33.14  Aligned_cols=59  Identities=17%  Similarity=0.085  Sum_probs=40.5

Q ss_pred             eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee-ccCCCCC-CceEECCCCC-EEEEEecC
Q 046107           73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI-ENLPGGP-DNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~-~~~~~~p-~~i~~d~dG~-l~va~~~~  135 (224)
                      -+.+++-.++|.++.+..+.|..||.+|-    ...+- ......| .||++.+-.. |+++.+..
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGM----SPIFHASEAHSAPCRGICFSPSNEALLVSVGYD  230 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCC----CcccchhhhccCCcCcceecCCccceEEEeccc
Confidence            45688888899999999999999998762    11111 1122234 8999998765 66666665

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.38  E-value=10  Score=32.70  Aligned_cols=105  Identities=11%  Similarity=0.098  Sum_probs=63.1

Q ss_pred             cceeEEecC-CCEEEEEeCCCCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCC-EEEEEecCCchhhhhhccC
Q 046107           71 ANGVALSKH-GDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSS  146 (224)
Q Consensus        71 pngia~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~  146 (224)
                      +.+|.|-++ -.+-|++.+..+++..||+.-   + .+.+...  .......+..+++|+ +|+++..            
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~------------  268 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRH---Q-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTK------------  268 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcc---c-CcceeEeccccCcceeeeecCCCcEEEEeccc------------
Confidence            346667653 145889999999999999862   1 2222222  222347888899998 5655443            


Q ss_pred             hhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEE-EeCCCCCcccceeEEEEECCEEEEEeCCCCeEEE
Q 046107          147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIRE-FNDPNAKNISFVTSALEFQGNLYLASINSNFIGK  220 (224)
Q Consensus       147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~-~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~  220 (224)
                                               +.+..||-. |++... +..-.|    .++++.-+...=|+++.+=+|..|
T Consensus       269 -------------------------g~l~~FD~r~~kl~g~~~kg~tG----sirsih~hp~~~~las~GLDRyvR  315 (412)
T KOG3881|consen  269 -------------------------GQLAKFDLRGGKLLGCGLKGITG----SIRSIHCHPTHPVLASCGLDRYVR  315 (412)
T ss_pred             -------------------------chhheecccCceeeccccCCccC----CcceEEEcCCCceEEeeccceeEE
Confidence                                     467788854 555554 444444    366666666545555555444444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=86.22  E-value=7  Score=33.09  Aligned_cols=32  Identities=3%  Similarity=-0.143  Sum_probs=27.2

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLK   99 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~   99 (224)
                      ..+..-+++.+||+.||+......+|..+|+.
T Consensus       250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             CCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            34445678999999999999999999999986

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=86.08  E-value=18  Score=29.97  Aligned_cols=65  Identities=18%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+-+++++++||+ ..++-+..+.+..+|+.+++  ..+.|. +-....-++++++|.+-.|+....
T Consensus        62 HsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~--~t~~f~-GH~~dVlsva~s~dn~qivSGSrD  126 (315)
T KOG0279|consen   62 HSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGE--STRRFV-GHTKDVLSVAFSTDNRQIVSGSRD  126 (315)
T ss_pred             cceEecceEEccCCc-eEEeccccceEEEEEecCCc--EEEEEE-ecCCceEEEEecCCCceeecCCCc
Confidence            366778999999998 77777888999999997632  223343 223345688888888877766555

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=86.03  E-value=4.5  Score=36.17  Aligned_cols=57  Identities=18%  Similarity=0.281  Sum_probs=40.3

Q ss_pred             eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCc---eEECCCCC-EEEEEecCC
Q 046107           73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN---INLAPDGS-FWISLIKMN  136 (224)
Q Consensus        73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~dG~-l~va~~~~~  136 (224)
                      .++++||.+ |-++....+-|..||+...      ++.....|++||   |.+..||. ||.+.....
T Consensus       514 ALa~spDak-vcFsccsdGnI~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  514 ALAISPDAK-VCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             hhhcCCccc-eeeeeccCCcEEEEEcccc------eeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            789999998 7777777889999998641      222233455554   66778885 999877663

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=85.97  E-value=23  Score=30.97  Aligned_cols=116  Identities=16%  Similarity=0.033  Sum_probs=71.2

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec-c--CCCCCCceEECC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE-N--LPGGPDNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~--~~~~p~~i~~d~  124 (224)
                      +..|=.||..++......+..+....+.++++|..|..+ +..+.+-.++..+..  -...+-. .  ...-..-..+.|
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~e--I~~~~sA~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKE--IRQTFSAEGFKCASDWTRVVFSP  397 (459)
T ss_pred             ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeeccccc--EEEEeeccccccccccceeEECC
Confidence            445656675545555555556677889999999877776 566777778776521  1122211 1  112356677888


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEE
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALE  203 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~  203 (224)
                      +|.+..|....                                    ++|+..+-. ||+...+..+.-.  +.++++.+
T Consensus       398 d~~YvaAGS~d------------------------------------gsv~iW~v~tgKlE~~l~~s~s~--~aI~s~~W  439 (459)
T KOG0288|consen  398 DGSYVAAGSAD------------------------------------GSVYIWSVFTGKLEKVLSLSTSN--AAITSLSW  439 (459)
T ss_pred             CCceeeeccCC------------------------------------CcEEEEEccCceEEEEeccCCCC--cceEEEEE
Confidence            77766665554                                    677777754 7888887665322  25676665


Q ss_pred             E
Q 046107          204 F  204 (224)
Q Consensus       204 ~  204 (224)
                      .
T Consensus       440 ~  440 (459)
T KOG0288|consen  440 N  440 (459)
T ss_pred             c
Confidence            4

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=85.79  E-value=5.9  Score=34.43  Aligned_cols=22  Identities=23%  Similarity=0.034  Sum_probs=18.8

Q ss_pred             ccccceeEEecCCCEEEEEeCC
Q 046107           68 LYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ..+|.-+.+|-||++|||+++.
T Consensus       388 ~GGPQMlQLSLDGKRLYVt~SL  409 (476)
T KOG0918|consen  388 RGGPQMLQLSLDGKRLYVTNSL  409 (476)
T ss_pred             cCCceeEEeccCCcEEEEEchh
Confidence            3568889999999999999863

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.59  E-value=20  Score=31.07  Aligned_cols=31  Identities=13%  Similarity=0.017  Sum_probs=18.6

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEE
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHW   97 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~   97 (224)
                      ....-..+.|+|||++|--....+.+||..+
T Consensus       185 ~~~eV~DL~FS~dgk~lasig~d~~~VW~~~  215 (398)
T KOG0771|consen  185 HHAEVKDLDFSPDGKFLASIGADSARVWSVN  215 (398)
T ss_pred             hcCccccceeCCCCcEEEEecCCceEEEEec
Confidence            3455678999999985522223344555443

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=85.58  E-value=24  Score=34.22  Aligned_cols=95  Identities=16%  Similarity=0.203  Sum_probs=65.9

Q ss_pred             CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107           21 DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLK   99 (224)
Q Consensus        21 ~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~   99 (224)
                      ++.+|.+|.+                 ...+.+......... ....+...+.|++++--++.+|.++.....|...+++
T Consensus       448 ~~~i~~~d~~-----------------~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~  510 (877)
T KOG1215|consen  448 NNRIYWADLS-----------------DEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLD  510 (877)
T ss_pred             CCEEEEEecc-----------------CCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEEEEcc
Confidence            4478888765                 334555444322222 3456788999999998777799999999999999877


Q ss_pred             CCCcccceEeeccCCCCCCceEECCC-CCEEEEEecC
Q 046107          100 LGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKM  135 (224)
Q Consensus       100 ~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~  135 (224)
                      +..   ..+++......|..+++++. |.+|..+++.
T Consensus       511 g~~---~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~  544 (877)
T KOG1215|consen  511 GSS---RKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQ  544 (877)
T ss_pred             CCc---eeEEEecCCCCccceeeccccCeeEEecCCC
Confidence            632   23433222268999999985 7788888875

>PF15416 DUF4623: Domain of unknown function (DUF4623)

Probab=85.36  E-value=22  Score=30.41  Aligned_cols=116  Identities=10%  Similarity=0.057  Sum_probs=64.0

Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCcccceEe-ec--cC--CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHH
Q 046107           78 KHGDFVVVCESWKFRCIKHWLKLGDKRDREIF-IE--NL--PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQL  152 (224)
Q Consensus        78 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~-~~--~~--~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~  152 (224)
                      =||+++.|.............+.-+.++...+ .+  +.  ..++.+|..-.+|.+|++...++..              
T Consensus       141 fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~~--------------  206 (442)
T PF15416_consen  141 FDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGKA--------------  206 (442)
T ss_pred             CCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCCCC--------------
Confidence            36777877776554545555443222333222 11  21  2378999999999999999887421              


Q ss_pred             HhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEE-----eCCCCCccc--ceeEEEEE--CCEEEEEeCCCCeEEEee
Q 046107          153 LEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREF-----NDPNAKNIS--FVTSALEF--QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~-----~~~~g~~~~--~~t~~~~~--~g~lyv~~~~~~~i~~~~  222 (224)
                                    +|   -+|+... |.-++....     ..|.....+  +.+...+.  +|.+|+++..+-.|.|++
T Consensus       207 --------------SP---LKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~  269 (442)
T PF15416_consen  207 --------------SP---LKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFT  269 (442)
T ss_pred             --------------Cc---eEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEE
Confidence                          01   3444444 444432221     112111111  22222333  478999999999999998


Q ss_pred             CC
Q 046107          223 LK  224 (224)
Q Consensus       223 ~~  224 (224)
                      +.
T Consensus       270 vs  271 (442)
T PF15416_consen  270 VS  271 (442)
T ss_pred             cc
Confidence            63

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=85.25  E-value=28  Score=31.35  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             CCceEEEEeCCCCeEEEEe-----cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107           47 PHGQLLRYDPSSKQVSIVL-----EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN  121 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~-----~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~  121 (224)
                      +.|.++.+++.++......     ...++--.++|.++|+ +.-.|+ ++-|..|...+... ..+++.  -++..-.++
T Consensus       220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS-~G~i~Iw~~~~~~~-~k~~~a--H~ggv~~L~  294 (626)
T KOG2106|consen  220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDS-GGNILIWSKGTNRI-SKQVHA--HDGGVFSLC  294 (626)
T ss_pred             CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecC-CceEEEEeCCCceE-EeEeee--cCCceEEEE
Confidence            4677888887755433221     1225566899999997 666665 56788888754322 222332  245567888


Q ss_pred             ECCCCCEEE
Q 046107          122 LAPDGSFWI  130 (224)
Q Consensus       122 ~d~dG~l~v  130 (224)
                      .-.+|.|..
T Consensus       295 ~lr~GtllS  303 (626)
T KOG2106|consen  295 MLRDGTLLS  303 (626)
T ss_pred             EecCccEee
Confidence            889999887

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=84.83  E-value=9.2  Score=35.64  Aligned_cols=57  Identities=19%  Similarity=0.143  Sum_probs=38.8

Q ss_pred             eEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEe-ecc-CCCCCCceEECCCCCEEEEEecC
Q 046107           74 VALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIF-IEN-LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        74 ia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~-~~~-~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ++++++|+.||.+.  +++|..++..++.   .... .+. .+...+.+++++|+.+.++...+
T Consensus        25 ~~~s~nG~~L~t~~--~d~Vi~idv~t~~---~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs   83 (775)
T KOG0319|consen   25 VAWSSNGQHLYTAC--GDRVIIIDVATGS---IALPSGSNEDEDEITALALTPDEEVLVTASRS   83 (775)
T ss_pred             eeECCCCCEEEEec--CceEEEEEccCCc---eecccCCccchhhhheeeecCCccEEEEeecc
Confidence            89999999888875  4578888876432   1111 111 23467899999999877776655

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=84.78  E-value=31  Score=32.18  Aligned_cols=51  Identities=8%  Similarity=0.034  Sum_probs=29.8

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEc
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWL   98 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~   98 (224)
                      .+|.|-+++.++.-+......-.+-..|....+++ ++|+..-.+.+..+..
T Consensus       198 NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  198 NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKK  248 (745)
T ss_pred             CCceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeec
Confidence            36777777775333333333345556777555554 8888766666555544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=84.64  E-value=28  Score=30.81  Aligned_cols=113  Identities=13%  Similarity=0.090  Sum_probs=64.0

Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEeec-cCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIFIE-NLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      ||-+ +..+.+..|++..+.     .+.. ..|..+..+++||-++ +|++...++-.+..+-.           ++.  
T Consensus       191 l~Ta-S~D~t~k~wdlS~g~-----LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~-----------~~~--  251 (476)
T KOG0646|consen  191 LYTA-SEDRTIKLWDLSLGV-----LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK-----------LSG--  251 (476)
T ss_pred             EEEe-cCCceEEEEEeccce-----eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhc-----------CCc--
Confidence            4433 456677778876532     2222 2456789999999765 88887776422111100           110  


Q ss_pred             HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                             .++.-..-..++++.....+....+.  +.+|+++.. +|+|.++.-..+.+.+-+.
T Consensus       252 -------~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  252 -------QSAGVNQKGRHEENTQINVLVGHENE--SAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             -------ccccccccccccccceeeeeccccCC--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence                   00001123444566666666544332  578887754 7888888888877776553

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=84.41  E-value=6.1  Score=34.23  Aligned_cols=64  Identities=11%  Similarity=-0.021  Sum_probs=41.6

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~  134 (224)
                      ....+.-++|+||+. ..++.+..+.++.++...+   ......+.-..++.|+++|+-+.....-+.
T Consensus       122 h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~yvqgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  122 HRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAG---QLLAILDDHEHYVQGVAWDPLNQYVASKSS  185 (434)
T ss_pred             cccchhhhhccCCCc-eeeeeeccceEEEEEeccc---eeEeeccccccccceeecchhhhhhhhhcc
Confidence            346678899999997 5566677888898988532   221222223357889999886655544433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=84.14  E-value=24  Score=31.38  Aligned_cols=110  Identities=10%  Similarity=-0.005  Sum_probs=70.7

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChh
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKN  148 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~  148 (224)
                      +...+++|+.+|. +.++-.-++.+..|+.+|..+   ..+... .+-.-.+.+..+|++.++..-.             
T Consensus       236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l~---~tl~~H-kgPI~slKWnk~G~yilS~~vD-------------  297 (524)
T KOG0273|consen  236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNLI---STLGQH-KGPIFSLKWNKKGTYILSGGVD-------------  297 (524)
T ss_pred             CCcceEEecCCCC-eEEEeecCcEEEEEecCchhh---hhhhcc-CCceEEEEEcCCCCEEEeccCC-------------
Confidence            3446899999998 777777788999898877321   222111 1223678889999988877665             


Q ss_pred             HHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          149 RKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                             +.++..|. .|.....+......    .-.+.+.++.-|+++....+|.+|.+
T Consensus       298 -----------------------~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~td~~i~V~kv  346 (524)
T KOG0273|consen  298 -----------------------GTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSSTDGCIHVCKV  346 (524)
T ss_pred             -----------------------ccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecCCCceEEEEEe
Confidence                                   45666775 36665555443221    11234456677777777777777764

>PHA03098 kelch-like protein; Provisional

Probab=83.73  E-value=33  Score=30.97  Aligned_cols=125  Identities=14%  Similarity=0.019  Sum_probs=63.9

Q ss_pred             ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-----CCeEEEEEccCCCcccceEeeccCCC-CCCc
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW-----KFRCIKHWLKLGDKRDREIFIENLPG-GPDN  119 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~~  119 (224)
                      ..++++|+.+++++.+.+ ...|   .+++.- ++ .||+.-..     ...+.+|++...   ..+... ..+. .-..
T Consensus       311 ~~v~~yd~~~~~W~~~~~-~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~-~lp~~r~~~  383 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPE-LIYPRKNPGVTVF-NN-RIYVIGGIYNSISLNTVESWKPGES---KWREEP-PLIFPRYNP  383 (534)
T ss_pred             ccEEEEeCCCCeeeECCC-CCcccccceEEEE-CC-EEEEEeCCCCCEecceEEEEcCCCC---ceeeCC-CcCcCCccc
Confidence            468999998888876532 2222   233332 44 59887542     245788887542   122211 1111 1111


Q ss_pred             eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccce
Q 046107          120 INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISFV  198 (224)
Q Consensus       120 i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~~  198 (224)
                      .+.--+|.+|+..+.....                              .....+.++|+.. ++...-..|.+.  . .
T Consensus       384 ~~~~~~~~iYv~GG~~~~~------------------------------~~~~~v~~yd~~t~~W~~~~~~p~~r--~-~  430 (534)
T PHA03098        384 CVVNVNNLIYVIGGISKND------------------------------ELLKTVECFSLNTNKWSKGSPLPISH--Y-G  430 (534)
T ss_pred             eEEEECCEEEEECCcCCCC------------------------------cccceEEEEeCCCCeeeecCCCCccc--c-C
Confidence            2222468899976632100                              0015789999874 443322223222  1 2


Q ss_pred             eEEEEECCEEEEEeC
Q 046107          199 TSALEFQGNLYLASI  213 (224)
Q Consensus       199 t~~~~~~g~lyv~~~  213 (224)
                      ..++..+++||+-.-
T Consensus       431 ~~~~~~~~~iyv~GG  445 (534)
T PHA03098        431 GCAIYHDGKIYVIGG  445 (534)
T ss_pred             ceEEEECCEEEEECC
Confidence            234557889998764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=83.54  E-value=34  Score=30.87  Aligned_cols=29  Identities=7%  Similarity=-0.239  Sum_probs=22.9

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEE
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHW   97 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~   97 (224)
                      .....|+|.+|+.+ +|++......+..++
T Consensus       368 ~delwgla~hps~~-q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  368 GDELWGLATHPSKN-QLLTCGQDKHVRLWN  396 (626)
T ss_pred             ccceeeEEcCCChh-heeeccCcceEEEcc
Confidence            34778999999876 899987777776666

>KOG4328 consensus WD40 protein [Function unknown]

Probab=83.53  E-value=26  Score=30.97  Aligned_cols=115  Identities=16%  Similarity=0.098  Sum_probs=67.5

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEcc--CCCcccceEeecc-CCC---CCCceEECCCCCEEEEEecCCchhhhhhc
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLK--LGDKRDREIFIEN-LPG---GPDNINLAPDGSFWISLIKMNSSAVETVH  144 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~~-~~~---~p~~i~~d~dG~l~va~~~~~~~~~~~~~  144 (224)
                      -|...|||.+.. .++....+.|..|+..  +........+... ..+   .|---++|++-++.+.....         
T Consensus       372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~---------  441 (498)
T KOG4328|consen  372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP---------  441 (498)
T ss_pred             eeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC---------
Confidence            467789998877 6677778899999873  1111111111111 111   35566788887765554444         


Q ss_pred             cChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcE-EEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107          145 SSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSI-IREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       145 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~-~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~  222 (224)
                                                 ..|-.||+.|+- +-.+++|.-..++.+...-+-++.+..++..+..|.++.
T Consensus       442 ---------------------------r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  442 ---------------------------RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             ---------------------------cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence                                       358899988654 677788865433333333333555666666666666653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.14  E-value=5.5  Score=21.52  Aligned_cols=30  Identities=17%  Similarity=-0.054  Sum_probs=21.7

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEE
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHW   97 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~   97 (224)
                      .....+.|+++|+++ .+++-...+.|..|+
T Consensus        10 h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   10 HSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             CCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            345668999999987 555555677877764

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=83.08  E-value=17  Score=31.64  Aligned_cols=62  Identities=10%  Similarity=-0.006  Sum_probs=36.6

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~  134 (224)
                      .....++++|... -|++.+..+.|..++..-.  .+.+++. +..-.+..+.+-|.-.+.++.+.
T Consensus       181 eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~--kee~vL~-GHgwdVksvdWHP~kgLiasgsk  242 (464)
T KOG0284|consen  181 EAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMP--KEERVLR-GHGWDVKSVDWHPTKGLIASGSK  242 (464)
T ss_pred             hhhheeccCCCCc-eeEEecCCCeEEEEeccCC--chhheec-cCCCCcceeccCCccceeEEccC
Confidence            4457899999654 8999999999988886421  2233432 21224555555554334444333

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=82.76  E-value=18  Score=30.53  Aligned_cols=67  Identities=24%  Similarity=0.201  Sum_probs=43.6

Q ss_pred             eEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEE-eCCCC-eEEEEecCcccc--ceeEEecCCCEEEEEeCCCC
Q 046107           16 VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRY-DPSSK-QVSIVLEGLYFA--NGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        16 v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~g-~~~~~~~~~~~p--ngia~~~dg~~Lyv~~~~~~   91 (224)
                      |+..-+|++..|-+                 ..|+|.|+ |..+| .+..+-.+...+  .-|+++||..+| .+.+.++
T Consensus       187 v~Ln~~Gt~vATaS-----------------tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L-avsSdKg  248 (346)
T KOG2111|consen  187 VALNLQGTLVATAS-----------------TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL-AVSSDKG  248 (346)
T ss_pred             EEEcCCccEEEEec-----------------cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE-EEEcCCC
Confidence            34445788777753                 36888774 44334 333444444444  589999999744 4446889


Q ss_pred             eEEEEEccC
Q 046107           92 RCIKHWLKL  100 (224)
Q Consensus        92 ~I~~~~~~~  100 (224)
                      .|..|.+.+
T Consensus       249 TlHiF~l~~  257 (346)
T KOG2111|consen  249 TLHIFSLRD  257 (346)
T ss_pred             eEEEEEeec
Confidence            999999875

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=82.41  E-value=4.5  Score=36.41  Aligned_cols=69  Identities=19%  Similarity=0.102  Sum_probs=40.5

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      .+|..++.+||....+.+.                 +|.|=.++.++-++. .+.+-+.+.--++|+|||+ ..|+-.-.
T Consensus       292 ~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGED  353 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK-YIVTGGED  353 (636)
T ss_pred             cccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc-EEEecCCc
Confidence            5678888888887777643                 454444443322221 1123455666789999998 44444444


Q ss_pred             CeEEEEEc
Q 046107           91 FRCIKHWL   98 (224)
Q Consensus        91 ~~I~~~~~   98 (224)
                      .-|.+|..
T Consensus       354 DLVtVwSf  361 (636)
T KOG2394|consen  354 DLVTVWSF  361 (636)
T ss_pred             ceEEEEEe
Confidence            55555554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=82.21  E-value=13  Score=32.02  Aligned_cols=61  Identities=7%  Similarity=0.049  Sum_probs=44.7

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+.++|-+..|..+....+.|+.||+..... ..++..   ...++.|++.|++..+++....
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~KVi~---~mRTN~IswnPeafnF~~a~ED  250 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASP-LKKVIL---TMRTNTICWNPEAFNFVAANED  250 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCc-cceeee---eccccceecCccccceeecccc
Confidence            357788898877888888889999999975321 123332   3578999999988777776665

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=82.16  E-value=46  Score=31.40  Aligned_cols=79  Identities=18%  Similarity=0.070  Sum_probs=49.2

Q ss_pred             eeeeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCC
Q 046107            3 KIHLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGD   81 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~   81 (224)
                      +.|.|..  +..-|++.| |.+.|++=                 .-+|.+=-|+....++....+-......+++.|||+
T Consensus       404 ~~F~Hnd--fVTcVaFnPvDDryFiSG-----------------SLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk  464 (712)
T KOG0283|consen  404 KVFSHND--FVTCVAFNPVDDRYFISG-----------------SLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK  464 (712)
T ss_pred             eEEecCC--eeEEEEecccCCCcEeec-----------------ccccceEEeecCcCeeEeehhhhhhheeEEeccCCc
Confidence            4555543  445688888 55666662                 235544334433345554455567778999999999


Q ss_pred             EEEEEeCCCCeEEEEEccCC
Q 046107           82 FVVVCESWKFRCIKHWLKLG  101 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~~~  101 (224)
                      ...|.. ..|.+..|+..+.
T Consensus       465 ~avIGt-~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  465 GAVIGT-FNGYCRFYDTEGL  483 (712)
T ss_pred             eEEEEE-eccEEEEEEccCC
Confidence            666665 5567777887653

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.95  E-value=35  Score=29.94  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=33.1

Q ss_pred             eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           73 GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        73 gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ++..++||+.+.|.  ..+.+++-+.+|...  .+...........++.+.++|.+|++...+
T Consensus       243 ~v~~~~dG~~~~vg--~~G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G  301 (398)
T PLN00033        243 TVNRSPDGDYVAVS--SRGNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRGG  301 (398)
T ss_pred             eEEEcCCCCEEEEE--CCccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCCc
Confidence            45667777633343  234566655544211  122211223456788889999999987654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=81.81  E-value=19  Score=30.24  Aligned_cols=67  Identities=13%  Similarity=0.074  Sum_probs=43.9

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMN  136 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~  136 (224)
                      .....|+|||.-+.++.+.++.+.|..|+++....-..+... ...+-+-.+++..||. +|.+...+.
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~~Dk~   95 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGGCDKQ   95 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeeccCCc
Confidence            344578999955568889999999999998642111112211 2334457888988886 777766653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=81.46  E-value=29  Score=28.65  Aligned_cols=64  Identities=11%  Similarity=0.051  Sum_probs=39.6

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...-|-|+++-+++ +|+..++.++|-...--  .+.....+. --+..--.|.+||+|+.+......
T Consensus       147 ~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~si~-AH~snCicI~f~p~GryfA~GsAD  210 (313)
T KOG1407|consen  147 KFEVNEISWNNSND-LFFLTNGLGCVEILSYP--SLKPVQSIK-AHPSNCICIEFDPDGRYFATGSAD  210 (313)
T ss_pred             cceeeeeeecCCCC-EEEEecCCceEEEEecc--ccccccccc-cCCcceEEEEECCCCceEeecccc
Confidence            34568899998776 88877777776655431  122222221 112344567889999988776654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.13  E-value=31  Score=28.86  Aligned_cols=52  Identities=8%  Similarity=-0.138  Sum_probs=31.4

Q ss_pred             CceEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCCC----CeEEEEEccC
Q 046107           48 HGQLLRYDPSSKQVSIVLEG--LYFANGVALSKHGDFVVVCESWK----FRCIKHWLKL  100 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~--~~~pngia~~~dg~~Lyv~~~~~----~~I~~~~~~~  100 (224)
                      ...++++|+.+.+|+.+.+-  .......+..-++ .|||.-...    ..+++|++..
T Consensus       138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~  195 (323)
T TIGR03548       138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKK  195 (323)
T ss_pred             CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCC
Confidence            45799999988888876421  1222233334455 599875322    2467888864

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=81.03  E-value=32  Score=28.96  Aligned_cols=60  Identities=15%  Similarity=0.141  Sum_probs=35.3

Q ss_pred             ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107           70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      -.+.+.++.  ++.|+++. +..+..+|+.........-+. ...++..+..+.  |+ .||+++..
T Consensus        88 l~~Dv~vse--~yvyvad~-ssGL~IvDIS~P~sP~~~~~l-nt~gyaygv~vs--Gn~aYVadldd  148 (370)
T COG5276          88 LFADVRVSE--EYVYVADW-SSGLRIVDISTPDSPTLIGFL-NTDGYAYGVYVS--GNYAYVADLDD  148 (370)
T ss_pred             hhheeEecc--cEEEEEcC-CCceEEEeccCCCCcceeccc-cCCceEEEEEec--CCEEEEeeccC
Confidence            344666764  57999995 456788888753211111122 122455666664  54 89999765

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.79  E-value=37  Score=29.45  Aligned_cols=107  Identities=11%  Similarity=0.037  Sum_probs=58.4

Q ss_pred             ceEEEEeCCCC-----eEEEEecCccccceeEEecCCCEEEE-Ee--CCCCeEEEEEccCCCcccce-EeeccCC-CCCC
Q 046107           49 GQLLRYDPSSK-----QVSIVLEGLYFANGVALSKHGDFVVV-CE--SWKFRCIKHWLKLGDKRDRE-IFIENLP-GGPD  118 (224)
Q Consensus        49 g~l~~~~~~~g-----~~~~~~~~~~~pngia~~~dg~~Lyv-~~--~~~~~I~~~~~~~~~~~~~~-~~~~~~~-~~p~  118 (224)
                      ..+|.++...+     ++..+......-...+-+. ++.+|+ ++  ...++|++++++........ +++.... ....
T Consensus       252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~  330 (414)
T PF02897_consen  252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE  330 (414)
T ss_dssp             EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE
T ss_pred             CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE
Confidence            56888887643     5665554444333333233 445665 44  34579999998754332333 4432222 1346


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCC
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPN  191 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~  191 (224)
                      ++.+.. +.|++......                                  ..+|..++.+ ++....+..|.
T Consensus       331 ~~~~~~-~~Lvl~~~~~~----------------------------------~~~l~v~~~~~~~~~~~~~~p~  369 (414)
T PF02897_consen  331 DVSLFK-DYLVLSYRENG----------------------------------SSRLRVYDLDDGKESREIPLPE  369 (414)
T ss_dssp             EEEEET-TEEEEEEEETT----------------------------------EEEEEEEETT-TEEEEEEESSS
T ss_pred             EEEEEC-CEEEEEEEECC----------------------------------ccEEEEEECCCCcEEeeecCCc
Confidence            666653 34555444431                                  1688888988 88888877765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		1e-10
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		2e-10
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		3e-09

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 16  VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVA 75
            ++   G +Y T  ST +  +     +   +  G+L++YDPS+K+ +++L+ L+   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191
Query: 76  LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
           +S    FV+V E    + +K+WL+   K   E+ ++ +P  P NI    DG FW+S
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 16  VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVA 75
            ++   G +Y T  ST +  +     +   +  G+L++YDPS+K+ +++L+ L+   G  
Sbjct: 123 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 182
Query: 76  LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
           +S    FV+V E    + +K+WL+   K   E+ ++ +P  P NI    DG FW+S
Sbjct: 183 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 236

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 16  VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVA 75
            ++   G +Y T  ST +  +         +  G+L +YDPS+K+ +++ + L+   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAE 191
Query: 76  LSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWIS 131
           +S    FV+V E    + +K+WL+   K   E+ ++ +P  P NI    DG FW+S
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	3e-54
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	1e-27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	4e-14
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	3e-12
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	7e-11
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	1e-05
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	3e-06
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-05

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  175 bits (445), Expect = 3e-54
 Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 29/216 (13%)

Query: 10  IRFANDV-IEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL 68
            ++   V ++   G +Y T  ST +  +     +   +  G+L++YDPS+K+ +++L+ L
Sbjct: 125 FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 184

Query: 69  YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF 128
           +   G  +S    FV+V E    + +K+WL+   K   E+ +  +P  P NI    DG F
Sbjct: 185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIP-NPGNIKRNADGHF 242

Query: 129 WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN 188
           W+S                +        P               K +K    G+I+    
Sbjct: 243 WVSS-----------SEELDGNMHGRVDP---------------KGIKFDEFGNILEVIP 276

Query: 189 DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK 224
            P            E  G LY+ ++    +G L   
Sbjct: 277 LPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  106 bits (266), Expect = 1e-27
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 23/212 (10%)

Query: 8   HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG 67
            L+   ND++       Y T       P     ++  G     +  Y P    V +V EG
Sbjct: 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEG 219

Query: 68  LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DG 126
             FANG+ +S  G +V + E    +   +     +     + + +     DNI++ P  G
Sbjct: 220 FDFANGINISPDGKYVYIAELLAHKIHVYEKH-ANWTLTPLRVLSFDTLVDNISVDPVTG 278

Query: 127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIRE 186
             W+               +    ++L                   ++  + +    +  
Sbjct: 279 DLWVGCHPNGMRIFFYDAENPPGSEVL-------------------RIQDILSEEPKVTV 319

Query: 187 FNDPNAKNISFVTSALEFQGNLYLASINSNFI 218
               N   +   T A  ++G L + ++    +
Sbjct: 320 VYAENGTVLQGSTVAAVYKGKLLIGTVFHKAL 351

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 14  NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANG 73
           ND     +G+L+IT  +               E  G +  +    + +  V     F NG
Sbjct: 120 NDCAFDYEGNLWIT--APAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAFQFPNG 176

Query: 74  VALSKHGD----FVVVCESWKFRCIKHWLKL-GDKRDREIFIE---NLPGGPDNINLAPD 125
           +A+    D     ++V E+   +   + +K      +++++        GG D ++   D
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236

Query: 126 GSFWISL 132
            +  ++ 
Sbjct: 237 NNLLVAN 243

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 6/123 (4%)

Query: 14  NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANG 73
           ND+I A DG+++ T         +          H  + R  P        +  L   NG
Sbjct: 134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRMADLDHPNG 192

Query: 74  VALSKHGDFVVVCESWKFRCIKHWLKLGDKRD-----REIFIENLPGGPDNINLAPDGSF 128
           +A S     + V ++ +       +     RD     R  F     G PD   +   G  
Sbjct: 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252

Query: 129 WIS 131
           W S
Sbjct: 253 WSS 255

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 16/127 (12%)

Query: 11  RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
              +D++  S G  Y T                   P G +    P  + V+ +++ +  
Sbjct: 135 YCIDDMVFDSKGGFYFT---D--------FRGYSTNPLGGVYYVSPDFRTVTPIIQNISV 183

Query: 71  ANGVALSKHGDFVVVCES-----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD 125
           ANG+ALS     + V E+      +       + +        +      GPD+  +  D
Sbjct: 184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD 243

Query: 126 GSFWISL 132
            + ++++
Sbjct: 244 DNLYVAM 250

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 47  PHGQLLRYDPSSKQV-SIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRD 105
             G + + +P +K++    +        + + K G  + VC    F+         +  D
Sbjct: 64  FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGD 122

Query: 106 R-EIFIENLPG--GPDNINLAPDGSFWIS 131
             +  IE+L      D++     G F+ +
Sbjct: 123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFT 151

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 9/123 (7%)

Query: 14  NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANG 73
           NDV  A DGSL+ +  +                P   + R  P    +S  +      NG
Sbjct: 118 NDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNG 176

Query: 74  VALSKHGDFVVVCES----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFW 129
           +A    G+ +V         ++         G+   + +     PG  D + +   G  W
Sbjct: 177 LAFLPSGNLLVSDTGDNATHRYCLNAR----GETEYQGVHFTVEPGKTDGLRVDAGGLIW 232

Query: 130 ISL 132
            S 
Sbjct: 233 ASA 235

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 40/247 (16%), Positives = 76/247 (30%), Gaps = 43/247 (17%)

Query: 11  RFANDVIEASDGSLYITVSSTKFAPKA------YYLDLVEGEPH----GQLLRYDPSSKQ 60
           +F  +V+  +   L   + + +  P           D +  +        + R  P   +
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-LK 139

Query: 61  VSIVLEGLYFANGVALSKHGDF--------VVVCESWKFRCIK----HWLKLGDKRDREI 108
           +   L  L  A  V +   G          + VC S+K +C       WL L +    E 
Sbjct: 140 LRQALLELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 109 FIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM---- 164
            +E L      +    D + W S    +S+    +HS +   + L +     N L+    
Sbjct: 198 VLEML----QKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 165 -STGKGAAA-----KVVKVSANGSIIREFNDPNAKNISFVTSALEF---QGNLYLASINS 215
               K   A     K++  +    +    +     +IS    ++     +    L     
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 216 NFIGKLP 222
                LP
Sbjct: 313 CRPQDLP 319

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 11/128 (8%)

Query: 11  RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF 70
            F N +   SD       S            +   +P G +    P   + +       F
Sbjct: 117 IFLNGITPLSDTQYLTADSYRGAIWL-----IDVVQPSGSIWLEHPMLARSNSES---VF 168

Query: 71  ANGVALSKHGDFVVVCESWKFRCIKHWLKL-GDKRDREIFIENLPGGPDNINLAPDGSFW 129
                L + G+F+ V  + K   ++  +       + EIF+E      D+     +G+ +
Sbjct: 169 PAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLY 226

Query: 130 ISLIKMNS 137
            +    NS
Sbjct: 227 GATHIYNS 234

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 21/121 (17%)

Query: 12  FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA 71
           F  ++  A DG++++T             +       G+++   P      I        
Sbjct: 33  FLENLASAPDGTIFVT-------------NH----EVGEIVSITPDGN-QQIHATVEGKV 74

Query: 72  NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDN-INLAPDGSFWI 130
           +G+A + +GD V     W    I     +      E  +        N I    D  +  
Sbjct: 75  SGLAFTSNGDLVAT--GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 132

Query: 131 S 131
           +
Sbjct: 133 A 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.95
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.86
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.85
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.77
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.75
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.73
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.7
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.69
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.69
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.69
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.69
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.66
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.66
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.64
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.63
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.63
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.63
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.63
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.6
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.57
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.54
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.52
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.5
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.46
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.44
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.35
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.35
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.34
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.33
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.32
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.32
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.31
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.29
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.24
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.22
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.21
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.2
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.17
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.13
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.12
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.09
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.08
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.07
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.06
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.03
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.03
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.01
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.01
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.0
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.98
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.92
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.87
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.86
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.85
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.81
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.77
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.76
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.76
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.76
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.7
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.7
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.65
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.61
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.61
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.57
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.55
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.53
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.49
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.46
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.45
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.42
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.4
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.39
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.35
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.35
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.34
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.33
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.32
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.32
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.3
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.3
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.29
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.29
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.27
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.26
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.23
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.22
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.21
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.21
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.18
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.16
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.14
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.13
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.11
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.1
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.09
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.09
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.08
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.06
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.06
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.03
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.02
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.01
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.99
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.99
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.98
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.98
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.97
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.95
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.95
3ott_A	758	Two-component system sensor histidine kinase; beta	97.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.87
3ott_A	758	Two-component system sensor histidine kinase; beta	97.87
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.85
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.84
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.84
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.83
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.82
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.82
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.81
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.81
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.78
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.78
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.76
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.76
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.71
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.71
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.68
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.68
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.68
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.66
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.65
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.64
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.64
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.63
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.63
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.61
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.6
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.58
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.58
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.56
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.54
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.54
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.53
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.52
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.52
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.52
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.51
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.5
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.5
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.48
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.47
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.47
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.46
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.44
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.43
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.42
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.42
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.41
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.41
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.41
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.4
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.38
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.38
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.37
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.35
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.35
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.32
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.32
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.27
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.27
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.24
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.24
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.24
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.22
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.2
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.18
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.18
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.18
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.17
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.13
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.11
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.02
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.98
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.98
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.91
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.91
3jro_A	753	Fusion protein of protein transport protein SEC13	96.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.9
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.86
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	96.84
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.82
3jro_A	753	Fusion protein of protein transport protein SEC13	96.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.81
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.77
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.71
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	96.71
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.6
2pm7_B	297	Protein transport protein SEC13, protein transport	96.6
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.59
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.59
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.54
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.52
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.48
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.22
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.19
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.19
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.15
2pm7_B	297	Protein transport protein SEC13, protein transport	96.1
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	95.82
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.59
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.53
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.52
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.52
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	95.49
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.47
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.34
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.34
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.28
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	94.78
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	94.76
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	94.37
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.25
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.08
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.99
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.71
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.63
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	93.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	92.41
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.27
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	92.22
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.67
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.22
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.61
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	90.61
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.75
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.61
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.73
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.37
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	87.85
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	87.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.11
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	85.27
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	84.85
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	84.84
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	84.37
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	83.9
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	83.77
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.35
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	83.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	83.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.57

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.95  E-value=1.3e-26  Score=193.29  Aligned_cols=191  Identities=24%  Similarity=0.394  Sum_probs=152.5

Q ss_pred             eccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEE
Q 046107            6 LCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVV   84 (224)
Q Consensus         6 ~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Ly   84 (224)
                      .+.++..||++++++ +|+|||+++...+....+...+.+....|.|+++++++++++.+...+..||||++++||++||
T Consensus       121 ~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~ly  200 (322)
T 2fp8_A          121 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVL  200 (322)
T ss_dssp             TTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEE
T ss_pred             CCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEE
Confidence            345678899999999 9999999976444444444444445567899999998788777777889999999999999999


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                      |+++..++|++|++++...+..+++.+ .++ |+||++|++|++|++....+..+       |                 
T Consensus       201 v~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~-------~-----------------  254 (322)
T 2fp8_A          201 VAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGN-------M-----------------  254 (322)
T ss_dssp             EEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSS-------T-----------------
T ss_pred             EEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCccccc-------c-----------------
Confidence            999999999999998755555566653 456 99999999999999998742111       0                 


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeCC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~~  224 (224)
                        .....+.|.++|++|+.+..+..++|..+..++.++..+++|||++..+++|.+|++.
T Consensus       255 --~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          255 --HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             --TSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred             --cCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence              0011278999999999999999888765677888888899999999999999999873

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.95  E-value=2e-26  Score=195.03  Aligned_cols=194  Identities=18%  Similarity=0.273  Sum_probs=150.4

Q ss_pred             CceeeeccccccccceEEecCCcEEEEeCCCCCCcchh-hhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecC
Q 046107            1 MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAY-YLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKH   79 (224)
Q Consensus         1 ~~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~d   79 (224)
                      +++++++.+++.|||++++++|++|+|++.- |....+ ..+.....+.|.||++++.  +++.+.+++..||||+++||
T Consensus       155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spD  231 (355)
T 3sre_A          155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPD  231 (355)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTT
T ss_pred             EEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCC
Confidence            3678999999999999999999999998751 222111 1222345678999999984  67778889999999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccC-CCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           80 GDFVVVCESWKFRCIKHWLKL-GDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        80 g~~Lyv~~~~~~~I~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                      |++|||+++..++|++|+.+. +.++..+++  ..++.|||+++|+ +|++|+|.......+..+   .|.         
T Consensus       232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~---~P~---------  297 (355)
T 3sre_A          232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFY---DAE---------  297 (355)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEEESCHHHHHSC---CTT---------
T ss_pred             CCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEecCCceEEEEE---CCC---------
Confidence            999999999999999999863 345555665  3468999999999 599999876542111111   111         


Q ss_pred             hhHHhhhhcCCCceEEEEEEC----CCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          158 ELINQLMSTGKGAAAKVVKVS----ANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~----~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                ..+...|.|+.    .+++...++.+ +|+.++.+|.++..+|+||+++...+ +..|+|
T Consensus       298 ----------~~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          298 ----------NPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             ----------SCCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             ----------CCCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence                      01127899998    47888889988 78899999999999999999999877 778875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.86  E-value=4.3e-20  Score=152.68  Aligned_cols=172  Identities=20%  Similarity=0.266  Sum_probs=129.4

Q ss_pred             eeccccccccceEEecCCcEEEEeCCCCCCcc-hhhhh-hccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCE
Q 046107            5 HLCHLIRFANDVIEASDGSLYITVSSTKFAPK-AYYLD-LVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDF   82 (224)
Q Consensus         5 ~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~-~~~~~-~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~   82 (224)
                      ..+.+++.||+++++++|++||||+.  ++.. .+... .......+.|+++++++++++.+. ....|||++++|||+.
T Consensus       125 ~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~  201 (305)
T 3dr2_A          125 YAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQT  201 (305)
T ss_dssp             ETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSE
T ss_pred             cCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCE
Confidence            35566788999999999999999864  2211 00000 011224578999999767777766 7889999999999999


Q ss_pred             EEEEeCCC-----CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           83 VVVCESWK-----FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        83 Lyv~~~~~-----~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                      |||+++..     ++|++|++++..+...+++.+...+.|++|++|++|++|++.  .                      
T Consensus       202 lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--~----------------------  257 (305)
T 3dr2_A          202 LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--G----------------------  257 (305)
T ss_dssp             EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--S----------------------
T ss_pred             EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--C----------------------
Confidence            99999874     799999987543444556654446789999999999999987  2                      


Q ss_pred             hhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE--ECCEEEEEeCCCCeEEEeeCC
Q 046107          158 ELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE--FQGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~--~~g~lyv~~~~~~~i~~~~~~  224 (224)
                                    +.|.+++++|+.+..+..+.+     ++.++.  ++++||+++.  +.+.++++|
T Consensus       258 --------------~gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~--~~l~~~~~~  305 (305)
T 3dr2_A          258 --------------TGVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGG--PCLWMLPLP  305 (305)
T ss_dssp             --------------SEEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEET--TEEEEEECC
T ss_pred             --------------CcEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcC--CeEEEEECC
Confidence                          349999999999999887653     344443  4678999995  689998876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.85  E-value=5.2e-20  Score=151.75  Aligned_cols=161  Identities=16%  Similarity=0.202  Sum_probs=124.3

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      .+...+|+++++++|++|++++.....      ........+.||+++++ ++...+......||||+++||++.|||++
T Consensus        95 ~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           95 KKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             CSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred             CCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEec
Confidence            456789999999999999998541100      00112356899999997 67777777888999999999999999999


Q ss_pred             CCCCeEEEEEcc--CCCcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           88 SWKFRCIKHWLK--LGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        88 ~~~~~I~~~~~~--~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      +..++|++|+.+  ++.+...+++.+.  ..+.|++|++|++|++|++....                            
T Consensus       168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~----------------------------  219 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG----------------------------  219 (297)
T ss_dssp             GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT----------------------------
T ss_pred             CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC----------------------------
Confidence            999999999874  3334444555532  23689999999999999999887                            


Q ss_pred             hhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE---CCEEEEEeCCC
Q 046107          164 MSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF---QGNLYLASINS  215 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~---~g~lyv~~~~~  215 (224)
                              +.|.++|++ |+++..+..|..    .++++++.   .++|||++...
T Consensus       220 --------~~v~~~d~~tG~~~~~i~~p~~----~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          220 --------GRVIRLDPVTGKRLQTVKLPVD----KTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             --------TEEEEECTTTCCEEEEEECSSS----BEEEEEEESGGGCEEEEEEBCT
T ss_pred             --------CEEEEEcCCCceEEEEEECCCC----CceEEEEeCCCCCEEEEEcCCc
Confidence                    689999998 999999987743    46676664   37999999753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=6.3e-18  Score=138.49  Aligned_cols=168  Identities=18%  Similarity=0.225  Sum_probs=124.2

Q ss_pred             eccccccccceEEecCCcEEEEeCCCCCCcchhhh--hhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEE
Q 046107            6 LCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYL--DLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFV   83 (224)
Q Consensus         6 ~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~--~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~L   83 (224)
                      .+.++..|++++++++|++|+|++.  ++......  ........+.||+++++ ++.+.+......|+||+++|||+.|
T Consensus       110 ~~~~~~~~~~i~~d~~G~l~vtd~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l  186 (296)
T 3e5z_A          110 EGKKLNSPNDVCLAPDGSLWFSDPT--YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL  186 (296)
T ss_dssp             TTEECCCCCCEEECTTSCEEEEECS--HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE
T ss_pred             CCCCCCCCCCEEECCCCCEEEECCc--cccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE
Confidence            3455678999999999999999863  11000000  00011235689999998 7777777888999999999999977


Q ss_pred             EEEeCCCCeEEEEEcc-CCCc-ccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHH
Q 046107           84 VVCESWKFRCIKHWLK-LGDK-RDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELIN  161 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~-~~~~-~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  161 (224)
                       ++++..++|++|+++ .+.+ ...+++ ....+.|+++++|++|++|++.  .                          
T Consensus       187 -v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~--------------------------  236 (296)
T 3e5z_A          187 -VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--G--------------------------  236 (296)
T ss_dssp             -EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--T--------------------------
T ss_pred             -EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--C--------------------------
Confidence             999999999999986 3333 334455 4445689999999999999998  3                          


Q ss_pred             hhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE---ECCEEEEEeCCCCeEEEeeC
Q 046107          162 QLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE---FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       162 ~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~---~~g~lyv~~~~~~~i~~~~~  223 (224)
                                +.|.+++++|+.+..+..+.+     ++.++.   ++++||+++.  +.+.++++
T Consensus       237 ----------~~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~--~~l~~~~~  284 (296)
T 3e5z_A          237 ----------DGVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVS--TEFWSIET  284 (296)
T ss_dssp             ----------TEEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEEET--TEEEEEEC
T ss_pred             ----------CeEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcC--CeEEEEEc
Confidence                      479999999999988877654     344444   3468999985  57888875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.78  E-value=2.1e-17  Score=143.69  Aligned_cols=162  Identities=15%  Similarity=0.117  Sum_probs=123.5

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeE-EEEec--CccccceeEEecCCCEEE
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV-SIVLE--GLYFANGVALSKHGDFVV   84 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~-~~~~~--~~~~pngia~~~dg~~Ly   84 (224)
                      .+..|+++++++ +|+|||++..                 .++|+++++++++. +.+..  ....+.+|+++|+|++||
T Consensus       226 ~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY  288 (433)
T 4hw6_A          226 NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY  288 (433)
T ss_dssp             ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred             ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence            478899999999 8999999853                 57899999986766 33322  234556899999999999


Q ss_pred             EEeCCCCeEEEEEccC--CCcccceEeecc--C------------CCCCCceEE---------CCCCCEEEEEecCCchh
Q 046107           85 VCESWKFRCIKHWLKL--GDKRDREIFIEN--L------------PGGPDNINL---------APDGSFWISLIKMNSSA  139 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~--~~~~~~~~~~~~--~------------~~~p~~i~~---------d~dG~l~va~~~~~~~~  139 (224)
                      |++...++|++++.++  +.+.....+...  .            ...|.++++         |++|+||+++...    
T Consensus       289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n----  364 (433)
T 4hw6_A          289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS----  364 (433)
T ss_dssp             EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT----
T ss_pred             EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC----
Confidence            9999999999999763  222223333321  0            125889999         9999999999887    


Q ss_pred             hhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCC--------C-----CcccceeEEEEE--
Q 046107          140 VETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPN--------A-----KNISFVTSALEF--  204 (224)
Q Consensus       140 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~--------g-----~~~~~~t~~~~~--  204 (224)
                                                      .+|.+++++|++........        |     ..+..+..++.+  
T Consensus       365 --------------------------------~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  412 (433)
T 4hw6_A          365 --------------------------------HTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK  412 (433)
T ss_dssp             --------------------------------TEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred             --------------------------------CEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence                                            68999999997766553211        1     135668888766  


Q ss_pred             CCEEEEEeCCCCeEEEeeC
Q 046107          205 QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~~  223 (224)
                      +|+|||++..+++|.++++
T Consensus       413 ~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          413 RKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEec
Confidence            7999999999999999975

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=4.5e-17  Score=141.40  Aligned_cols=162  Identities=10%  Similarity=0.135  Sum_probs=123.2

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEE
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv   85 (224)
                      .+..|+++++++ +|.|||+|..                 .++|++++++++....+.  .....|+||+++|+|++|||
T Consensus       224 ~~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          224 KGQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             ECSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             cCCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence            367899999999 8999999954                 578999999866653332  24467999999999999999


Q ss_pred             EeCCCCeEEEEEccCC--CcccceEeecc--------------CCCCCC-ceEE--------CCCCCEEEEEecCCchhh
Q 046107           86 CESWKFRCIKHWLKLG--DKRDREIFIEN--------------LPGGPD-NINL--------APDGSFWISLIKMNSSAV  140 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~--~~~~~~~~~~~--------------~~~~p~-~i~~--------d~dG~l~va~~~~~~~~~  140 (224)
                      ++...++|++++.++.  .+.....+...              ....|. ++++        |++|+||+++...     
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n-----  361 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN-----  361 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG-----
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC-----
Confidence            9999999999998752  22222333211              012577 8888        5679999999987     


Q ss_pred             hhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCC--------CC-----CcccceeEEEEE--C
Q 046107          141 ETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDP--------NA-----KNISFVTSALEF--Q  205 (224)
Q Consensus       141 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~--------~g-----~~~~~~t~~~~~--~  205 (224)
                                                     .+|.+++++|++.......        +|     ..+..+..++.+  +
T Consensus       362 -------------------------------~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~  410 (430)
T 3tc9_A          362 -------------------------------HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEER  410 (430)
T ss_dssp             -------------------------------TEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTT
T ss_pred             -------------------------------cEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCC
Confidence                                           6899999999877665431        11     135678888766  5


Q ss_pred             CEEEEEeCCCCeEEEeeC
Q 046107          206 GNLYLASINSNFIGKLPL  223 (224)
Q Consensus       206 g~lyv~~~~~~~i~~~~~  223 (224)
                      ++|||++..+++|.++++
T Consensus       411 g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          411 ECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             TEEEEEEGGGTEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEcc
Confidence            999999999999999975

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.76  E-value=1.1e-16  Score=133.33  Aligned_cols=159  Identities=14%  Similarity=0.095  Sum_probs=123.4

Q ss_pred             cccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEE
Q 046107            8 HLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         8 ~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv   85 (224)
                      ..+..|++++++. +|+||++|..                 .++|.+++.++...+.+. ..+..|++|+++|+++.||+
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~  136 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW  136 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred             CCCCCcCEEEEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEE
Confidence            3467899999995 6799999954                 568999998755555554 46889999999997778999


Q ss_pred             EeCCC-CeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           86 CESWK-FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        86 ~~~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ++... ++|++++++|.   ..+++.......|+||++|++ ++||+++...                            
T Consensus       137 ~d~~~~~~I~~~~~dG~---~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~----------------------------  185 (316)
T 1ijq_A          137 TDWGTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL----------------------------  185 (316)
T ss_dssp             EECSSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTT----------------------------
T ss_pred             EccCCCCeEEEEcCCCC---CeEEEEECCCCCceEEEEeccCCEEEEEECCC----------------------------
Confidence            99875 89999999873   233443323357999999975 7899999876                            


Q ss_pred             hhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                              .+|.+++.+|+..+.+....+ .+..+..++.++++||++++.+++|.+++.
T Consensus       186 --------~~I~~~d~dg~~~~~~~~~~~-~~~~P~giav~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          186 --------HSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             --------TEEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             --------CeEEEEecCCCceEEEeecCC-ccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence                    689999999976666543211 245677777789999999999999999863

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.76  E-value=8.9e-17  Score=135.86  Aligned_cols=157  Identities=12%  Similarity=0.093  Sum_probs=122.6

Q ss_pred             ccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEE
Q 046107            7 CHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVV   84 (224)
Q Consensus         7 ~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Ly   84 (224)
                      ...+..|++++++. +|+||++|..                 .++|.+++.++...+.+. .++..|+||+++|+++.||
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly  174 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY  174 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEE
Confidence            34567899999996 6799999954                 468999998754444443 5688999999999878899


Q ss_pred             EEeCCC-CeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           85 VCESWK-FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        85 v~~~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      +++... ++|++++++|.   ..+++.......|+||++|+ +++||+++...                           
T Consensus       175 ~td~~~~~~I~r~~~dG~---~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~---------------------------  224 (349)
T 3v64_C          175 WTDWGNTPRIEASSMDGS---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH---------------------------  224 (349)
T ss_dssp             EEECSSSCEEEEEETTSC---SCEESCCSSCSCEEEEEEETTTTEEEEEETTT---------------------------
T ss_pred             EeccCCCCEEEEEeCCCC---CcEEEEECCCCCcceEEEeCCCCEEEEEECCC---------------------------
Confidence            999887 99999999873   23333322234799999996 67899999877                           


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~  222 (224)
                               .+|.+++.+|.....+... +  +..+..++.++++||++++.+++|.+++
T Consensus       225 ---------~~I~~~~~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          225 ---------HVIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             ---------TEEEEEETTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---------CEEEEEeCCCCceEEEEeC-C--CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence                     6899999998765554332 1  3567777778999999999999999986

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.75  E-value=2.4e-16  Score=130.35  Aligned_cols=147  Identities=18%  Similarity=0.192  Sum_probs=110.0

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-----------ecCccccceeEEec
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-----------LEGLYFANGVALSK   78 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-----------~~~~~~pngia~~~   78 (224)
                      ..+++++++.+++.+|+++.                 ..|.||++|+.+++.+..           ...+..||||  ++
T Consensus       116 ~~~~~g~~~~~~~~~~v~d~-----------------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          116 AIFLNGITPLSDTQYLTADS-----------------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             CSCEEEEEESSSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             ccccCcccccCCCcEEEEEC-----------------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence            56678888777778888874                 257999999875433322           1345689998  88


Q ss_pred             CCCEEEEEeCCCCeEEEEEccC-CCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           79 HGDFVVVCESWKFRCIKHWLKL-GDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        79 dg~~Lyv~~~~~~~I~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                      |+++|||+++.+++|++|++++ +.++..+++.+.  ..|++|++|++|++|+++...                      
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~----------------------  232 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIY----------------------  232 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTT----------------------
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCC----------------------
Confidence            9989999999999999999974 344555555432  479999999999999999877                      


Q ss_pred             hhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-----CCEEEEEeCCC
Q 046107          158 ELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-----QGNLYLASINS  215 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-----~g~lyv~~~~~  215 (224)
                                    ++|.+++++|+.......+.+  +..+++++..     +++||+++..+
T Consensus       233 --------------~~V~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          233 --------------NSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             --------------CCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             --------------CeEEEECCCCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence                          689999999988554333322  3457777754     48999999753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.74  E-value=3.7e-16  Score=126.51  Aligned_cols=156  Identities=10%  Similarity=0.095  Sum_probs=119.1

Q ss_pred             cccccccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEE
Q 046107            8 HLIRFANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         8 ~~~~~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv   85 (224)
                      ..+..|++++++++ |+||++|..                 .++|++++.++...+.+. .++..|++|+++|++++|||
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv  138 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYW  138 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             CCCCCccEEEEEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEE
Confidence            34678999999985 689999953                 468999998744334343 45688999999998778999


Q ss_pred             EeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           86 CESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        86 ~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      ++..  .++|+++++++..   .+++.......|.++++|++ +++|+++...                           
T Consensus       139 ~~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~---------------------------  188 (267)
T 1npe_A          139 TDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGT---------------------------  188 (267)
T ss_dssp             EECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETTT---------------------------
T ss_pred             EECCCCCcEEEEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEEEECCC---------------------------
Confidence            9976  6899999998632   23343222357999999996 5799999877                           


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                               ++|.+++++|.....+.. .   ...+..++.++++||+++..+++|.+++.
T Consensus       189 ---------~~I~~~~~~g~~~~~~~~-~---~~~P~gi~~d~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          189 ---------HRAECLNPAQPGRRKVLE-G---LQYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             ---------TEEEEEETTEEEEEEEEE-C---CCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ---------CEEEEEecCCCceEEEec-C---CCCceEEEEeCCEEEEEECCCCeEEEEeC
Confidence                     689999999865554432 2   23456677789999999999999999975

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.74  E-value=2.6e-16  Score=135.42  Aligned_cols=161  Identities=14%  Similarity=0.108  Sum_probs=125.7

Q ss_pred             eeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCE
Q 046107            5 HLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDF   82 (224)
Q Consensus         5 ~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~   82 (224)
                      +-...+..|++++++. .++||++|..                 .++|.++++++...+.+. ..+..|+||+++|.+++
T Consensus       153 ~~~~~~~~p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~  215 (400)
T 3p5b_L          153 VISRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF  215 (400)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTE
T ss_pred             EEeCCCCCcccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCe
Confidence            3344678899999997 7899999954                 568999999855555544 57889999999998778


Q ss_pred             EEEEeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           83 VVVCESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        83 Lyv~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      ||+++.. .++|++++++|.   ..+++.......|.||++|+ +++||+++...                         
T Consensus       216 ly~td~~~~~~I~~~~~dG~---~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~-------------------------  267 (400)
T 3p5b_L          216 MYWTDWGTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-------------------------  267 (400)
T ss_dssp             EEEEECSSSCCEEEEETTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEETTT-------------------------
T ss_pred             EEEEeCCCCCEEEEEeCCCC---ccEEEEECCCCceEEEEEEeCCCEEEEEECCC-------------------------
Confidence            9999976 489999999873   23344433335899999996 57899999876                         


Q ss_pred             HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107          161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~  222 (224)
                                 ..|.+++.+|...+.+....+ .++.+..++.++++||++++.+++|.+++
T Consensus       268 -----------~~I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          268 -----------HSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             -----------TEEEEEETTSCCCEEEEECSS-TTSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred             -----------CEEEEEeCCCCccEEEEeCCC-CCCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence                       589999999977666543222 25667777789999999999999999986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=4e-16  Score=130.18  Aligned_cols=177  Identities=16%  Similarity=0.191  Sum_probs=126.6

Q ss_pred             ccccccceEEecCCcEEEEeCCCC-CCcch------hhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecC
Q 046107            9 LIRFANDVIEASDGSLYITVSSTK-FAPKA------YYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKH   79 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~-~~~~~------~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~d   79 (224)
                      .+..+.+|+++++|++|+++.... +....      +..........+.|+++|++++++....  ..+..|+||+++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            477899999999999999987531 10000      0000011124568999999767765443  23578999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCcccceEeec--------cCCCCCCceEECC-CCCEEEEEe-cCCchhhhhhccChhH
Q 046107           80 GDFVVVCESWKFRCIKHWLKLGDKRDREIFIE--------NLPGGPDNINLAP-DGSFWISLI-KMNSSAVETVHSSKNR  149 (224)
Q Consensus        80 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--------~~~~~p~~i~~d~-dG~l~va~~-~~~~~~~~~~~~~p~~  149 (224)
                      |+ |||++...++|.++++++.. .....+..        .....|.++++++ +|++|+++. ..              
T Consensus       102 g~-l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~--------------  165 (329)
T 3fvz_A          102 GN-YWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN--------------  165 (329)
T ss_dssp             SC-EEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC--------------
T ss_pred             CC-EEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC--------------
Confidence            98 99999999999999987631 11222211        1123699999999 899999996 45              


Q ss_pred             HHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCC-C-----CcccceeEEEEE-C-CEEEEEeCCCCeEEEe
Q 046107          150 KQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPN-A-----KNISFVTSALEF-Q-GNLYLASINSNFIGKL  221 (224)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~-g-----~~~~~~t~~~~~-~-g~lyv~~~~~~~i~~~  221 (224)
                                            .+|.+++++|+.+..+.... +     ..+..+..++.+ + ++||+++..+++|.++
T Consensus       166 ----------------------~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~  223 (329)
T 3fvz_A          166 ----------------------SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF  223 (329)
T ss_dssp             ----------------------CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ----------------------CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence                                  68999999999988874321 1     234567777765 4 8999999999999999


Q ss_pred             eC
Q 046107          222 PL  223 (224)
Q Consensus       222 ~~  223 (224)
                      ++
T Consensus       224 ~~  225 (329)
T 3fvz_A          224 KT  225 (329)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=3e-16  Score=127.55  Aligned_cols=161  Identities=11%  Similarity=0.133  Sum_probs=119.5

Q ss_pred             eeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCC
Q 046107            4 IHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGD   81 (224)
Q Consensus         4 ~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~   81 (224)
                      .+....+..|++++++++|++|+++..                 .+.|+++++++.....+.  .....|++|+++++|+
T Consensus       114 ~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          114 KFGATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             EECTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             EecCccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC
Confidence            344445678999999999999999843                 468999998744344333  3467899999999986


Q ss_pred             EEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           82 FVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                       |||++...++|.+|+.++..   ...+... ....|.++++|++|++|+++...+                        
T Consensus       177 -l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~------------------------  228 (286)
T 1q7f_A          177 -IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHNN------------------------  228 (286)
T ss_dssp             -EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSSS------------------------
T ss_pred             -EEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCCCC------------------------
Confidence             99999989999999987532   2222211 124799999999999999987761                        


Q ss_pred             HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                                 ..|.+++++|+.+..+....+  ...+..++.+ +|+||+++. +++|.++++
T Consensus       229 -----------~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~  278 (286)
T 1q7f_A          229 -----------FNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRY  278 (286)
T ss_dssp             -----------CEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred             -----------EEEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence                       289999999998888765332  1235555544 789999974 789988875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.74  E-value=1.8e-16  Score=135.70  Aligned_cols=159  Identities=11%  Similarity=0.082  Sum_probs=123.6

Q ss_pred             eeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCE
Q 046107            5 HLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDF   82 (224)
Q Consensus         5 ~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~   82 (224)
                      +-...+..|+++++++ .|+||++|..                 .++|++++.++...+.+ ..++..|+||+++|++++
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence            3344577899999996 6799999954                 46789999874443444 456789999999998888


Q ss_pred             EEEEeCCC-CeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           83 VVVCESWK-FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        83 Lyv~~~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      ||+++... ++|++++++|.   ..+++.......|+||++|+ +++||+++...                         
T Consensus       216 ly~td~~~~~~I~r~~~dG~---~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~-------------------------  267 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGS---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH-------------------------  267 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSC---SCEEEECSSCSCEEEEEEEGGGTEEEEEETTT-------------------------
T ss_pred             EEEeccCCCCEEEEEeCCCC---CcEEEEECCCCCeeeEEEeCCCCEEEEEECCC-------------------------
Confidence            99999887 99999999873   23344332234799999995 67899999877                         


Q ss_pred             HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107          161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~  222 (224)
                                 .+|.+++.+|.....+... +  +..+..++.++++||++++.+++|.+++
T Consensus       268 -----------~~I~~~d~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          268 -----------HVIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             -----------TEEEEECTTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             -----------CEEEEEeCCCCeeEEEEEC-C--CCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence                       6899999998765555432 2  3567777778999999999999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.74  E-value=4.7e-16  Score=125.85  Aligned_cols=158  Identities=14%  Similarity=0.110  Sum_probs=120.7

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEE
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~   86 (224)
                      +...|+++++++ +++||++|..                 .++|++++++++..+.+. .++..|++|+++++++.|||+
T Consensus        34 ~~~~~~gi~~d~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           34 PAKVIIGLAFDCVDKVVYWTDIS-----------------EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETT-----------------TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEE
T ss_pred             CCCcEEEEEEecCCCEEEEEECC-----------------CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEE
Confidence            456788999998 5689999943                 578999999865544444 456899999999987789999


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      +...++|.++++++..   .+.+.......|.++++|+ +|++|+++....+                            
T Consensus        97 d~~~~~I~~~~~~g~~---~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~----------------------------  145 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN----------------------------  145 (267)
T ss_dssp             ETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCSSS----------------------------
T ss_pred             ECCCCEEEEEEcCCCC---EEEEEECCCCCccEEEEeeCCCEEEEEECCCCC----------------------------
Confidence            9999999999998632   2333322225799999999 5889999876310                            


Q ss_pred             cCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                            ++|.+++++|+....+... +  +..+..++.+  +++||+++..+++|.++++
T Consensus       146 ------~~I~~~~~dg~~~~~~~~~-~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          146 ------PKIETSHMDGTNRRILAQD-N--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             ------CEEEEEETTSCCCEEEECT-T--CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ------cEEEEEecCCCCcEEEEEC-C--CCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence                  5889999999876665432 2  3456676655  5899999999999999986

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.74  E-value=1.4e-16  Score=130.75  Aligned_cols=173  Identities=17%  Similarity=0.217  Sum_probs=125.4

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEe----cCCCEE
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALS----KHGDFV   83 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~----~dg~~L   83 (224)
                      .+...|++++++++|++|+++.........+.  .......+.|++++++ ++.+.+......|++++++    +||+.|
T Consensus       114 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l  190 (314)
T 1pjx_A          114 RRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQL  190 (314)
T ss_dssp             CBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEE
T ss_pred             ccccCCcCEEECCCCCEEEEecCccccccccc--ccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEE
Confidence            34567999999999999999854100000000  0012345789999997 7777666667789999999    999889


Q ss_pred             EEEeCCCCeEEEEEcc-CCCcccceEeeccC--C-CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107           84 VVCESWKFRCIKHWLK-LGDKRDREIFIENL--P-GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL  159 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~-~~~~~~~~~~~~~~--~-~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (224)
                      |+++...++|++|+++ .+.....+.+....  . +.|+++++|++|++|+++...                        
T Consensus       191 ~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~------------------------  246 (314)
T 1pjx_A          191 IVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS------------------------  246 (314)
T ss_dssp             EEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT------------------------
T ss_pred             EEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC------------------------
Confidence            9999989999999976 22222233333211  1 569999999999999998776                        


Q ss_pred             HHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE-CCE-EEEEeCCCCeEEEeeC
Q 046107          160 INQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF-QGN-LYLASINSNFIGKLPL  223 (224)
Q Consensus       160 ~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~-~g~-lyv~~~~~~~i~~~~~  223 (224)
                                  +.|.+++++ |+.+..+..+.    ..++.++.+ +++ ||+++..++.|.++++
T Consensus       247 ------------~~i~~~d~~~g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          247 ------------SHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ------------TEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ------------CEEEEEcCCCCcEeEEEeCCC----CCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence                        579999998 88877776653    245666643 444 9999999999999976

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.74  E-value=3.8e-16  Score=134.72  Aligned_cols=157  Identities=15%  Similarity=0.130  Sum_probs=118.4

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE----ecCcc--ccc-eeEEecCC
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV----LEGLY--FAN-GVALSKHG   80 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~----~~~~~--~pn-gia~~~dg   80 (224)
                      ....|+++++++ +|.||+++.                  .+.|++++++++....+    ..+..  .|. +|+++|++
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~  278 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD  278 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred             hcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence            467899999999 789999762                  46899999986665554    22222  244 99999976


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCcccceEeeccC--------------CCCCCceEECCCCCEEEEEe-cCCchhhhhhcc
Q 046107           81 DFVVVCESWKFRCIKHWLKLGDKRDREIFIENL--------------PGGPDNINLAPDGSFWISLI-KMNSSAVETVHS  145 (224)
Q Consensus        81 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~--------------~~~p~~i~~d~dG~l~va~~-~~~~~~~~~~~~  145 (224)
                      +.|||++...++|++++.++.    ...+....              ...|++|++|++|++|+++. ..          
T Consensus       279 g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~----------  344 (409)
T 3hrp_A          279 SNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG----------  344 (409)
T ss_dssp             TEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT----------
T ss_pred             CEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC----------
Confidence            689999999999999998763    22222111              13599999999999999998 66          


Q ss_pred             ChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCC------C----CcccceeEEEEE-CCEEEEEeC
Q 046107          146 SKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPN------A----KNISFVTSALEF-QGNLYLASI  213 (224)
Q Consensus       146 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~------g----~~~~~~t~~~~~-~g~lyv~~~  213 (224)
                                                .+|.+++ ++|++......+.      |    ..+..+..++.+ +|+||+++.
T Consensus       345 --------------------------~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          345 --------------------------YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             --------------------------CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             --------------------------CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence                                      6899999 8888765554311      1    125667787765 599999999


Q ss_pred             CCCeEEEeeC
Q 046107          214 NSNFIGKLPL  223 (224)
Q Consensus       214 ~~~~i~~~~~  223 (224)
                      .+++|.++.+
T Consensus       399 ~n~~Ir~i~~  408 (409)
T 3hrp_A          399 WGKAIRKYAV  408 (409)
T ss_dssp             TTCEEEEEEE
T ss_pred             CCCeEEEEEe
Confidence            9999999975

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.73  E-value=3.2e-16  Score=130.97  Aligned_cols=157  Identities=13%  Similarity=0.079  Sum_probs=123.4

Q ss_pred             cccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEE
Q 046107            8 HLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         8 ~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv   85 (224)
                      ..+..|++++++. +|+||++|..                 .++|.++++++...+.+. ..+..|+||+++|++++||+
T Consensus        76 ~~l~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~  138 (318)
T 3sov_A           76 SGLLSPDGLACDWLGEKLYWTDSE-----------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW  138 (318)
T ss_dssp             ECCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred             CCCCCccEEEEEcCCCeEEEEECC-----------------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence            3467899999996 7899999954                 468999998754444444 67899999999998778999


Q ss_pred             EeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           86 CESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        86 ~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ++.. .++|++++++|.   ..+++.......|+||++|+ +++||+++...                            
T Consensus       139 td~~~~~~I~r~~~dG~---~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~----------------------------  187 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGS---SRFIIINSEIYWPNGLTLDYEEQKLYWADAKL----------------------------  187 (318)
T ss_dssp             EECSSSCEEEEEETTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEETTT----------------------------
T ss_pred             EecCCCCEEEEEEcCCC---CeEEEEECCCCCccEEEEeccCCEEEEEECCC----------------------------
Confidence            9965 689999999873   23344332235799999997 57899999876                            


Q ss_pred             hhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                              .+|.+++.+|+..+.+....   +..+..++.+++.+|++++.+++|.+++.
T Consensus       188 --------~~I~~~d~dG~~~~~~~~~~---~~~P~glav~~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          188 --------NFIHKSNLDGTNRQAVVKGS---LPHPFALTLFEDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             --------TEEEEEETTSCSCEEEECSC---CSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             --------CEEEEEcCCCCceEEEecCC---CCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence                    68999999987766664311   45677777789999999999999999874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.73  E-value=5.1e-16  Score=129.60  Aligned_cols=154  Identities=19%  Similarity=0.280  Sum_probs=118.5

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...+++++++++|++|++++...           .....+.||+++ + ++.+.+......|+++++++||+.||++++.
T Consensus       133 ~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          133 GNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             CCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence            45789999999999999874310           012467899999 5 7777666667789999999999999999998


Q ss_pred             CCeEEEEEcc--CC-CcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           90 KFRCIKHWLK--LG-DKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        90 ~~~I~~~~~~--~~-~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                      .++|++++.+  ++ .+...+++...  ..+.|+++++|++|++|++....                             
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~-----------------------------  250 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-----------------------------  250 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-----------------------------
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC-----------------------------
Confidence            9999999985  33 33334444422  23579999999999999998876                             


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE---CCEEEEEeCCCC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF---QGNLYLASINSN  216 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~---~g~lyv~~~~~~  216 (224)
                             +.|.+++++|+.+..+..+..    .+++++..   +++||+++...+
T Consensus       251 -------~~v~~~d~~g~~~~~i~~~~~----~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          251 -------GAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             -------TEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTT
T ss_pred             -------CEEEEECCCCCEEEEEECCCC----CcEEEEEecCCCCEEEEEecCCC
Confidence                   579999999999888876643    36666654   368999987763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=3.8e-16  Score=130.30  Aligned_cols=191  Identities=18%  Similarity=0.244  Sum_probs=120.7

Q ss_pred             eccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC--eEEEEe---------cCcccccee
Q 046107            6 LCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK--QVSIVL---------EGLYFANGV   74 (224)
Q Consensus         6 ~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g--~~~~~~---------~~~~~pngi   74 (224)
                      ....+..|++|+++++|++|+++..                 .++|+++++++.  .+..+.         ..+..|++|
T Consensus        86 ~~~~~~~p~gia~d~~g~l~v~d~~-----------------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           86 GKNLFYLPHGLSIDTDGNYWVTDVA-----------------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CTTTCSSEEEEEECTTSCEEEEETT-----------------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CCCccCCceEEEECCCCCEEEEECC-----------------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            3455789999999999999999854                 568999998743  233332         235579999


Q ss_pred             EEec-CCCEEEEEeC-CCCeEEEEEccCCCcccceEeecc---------CCCCCCceEECCC-CCEEEEEecCCc-hhhh
Q 046107           75 ALSK-HGDFVVVCES-WKFRCIKHWLKLGDKRDREIFIEN---------LPGGPDNINLAPD-GSFWISLIKMNS-SAVE  141 (224)
Q Consensus        75 a~~~-dg~~Lyv~~~-~~~~I~~~~~~~~~~~~~~~~~~~---------~~~~p~~i~~d~d-G~l~va~~~~~~-~~~~  141 (224)
                      +++| +|+ |||+++ ..++|.+|+.+|...   ..+...         ....|.++++|++ |++|+++...+. ..++
T Consensus       149 a~~~~~g~-lyv~d~~~~~~I~~~~~~g~~~---~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~  224 (329)
T 3fvz_A          149 AVEPSTGA-VFVSDGYCNSRIVQFSPSGKFV---TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFK  224 (329)
T ss_dssp             EECTTTCC-EEEEECSSCCEEEEECTTSCEE---EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCe-EEEEeCCCCCeEEEEcCCCCEE---EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEE
Confidence            9999 665 999996 799999999776321   222110         0125999999998 899999977631 1111


Q ss_pred             hhccChhHHHHHhhc--hhh--------HHh--h---hh---cCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEE
Q 046107          142 TVHSSKNRKQLLEEH--PEL--------INQ--L---MS---TGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSAL  202 (224)
Q Consensus       142 ~~~~~p~~~~~~~~~--~~~--------~~~--~---~~---~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~  202 (224)
                      .-     -.+++..+  +..        ..|  +   .+   ........|..++ .+|+.+..+....+ .+..+..++
T Consensus       225 ~~-----~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~~p~~ia  298 (329)
T 3fvz_A          225 TD-----TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK-HFDMPHDIV  298 (329)
T ss_dssp             TT-----TCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS-CCSSEEEEE
T ss_pred             CC-----CCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC-ccCCeeEEE
Confidence            00     00000000  000        000  0   00   0011113677777 56888777743222 345677777


Q ss_pred             EE-CCEEEEEeCCCCeEEEeeC
Q 046107          203 EF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       203 ~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      .+ +|+||+++..+++|.++++
T Consensus       299 ~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          299 ASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             ECTTSEEEEEESSSCCEEEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEEeC
Confidence            65 6799999999999999975

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.72  E-value=7.3e-16  Score=142.66  Aligned_cols=159  Identities=14%  Similarity=0.100  Sum_probs=125.2

Q ss_pred             ccccccccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEE
Q 046107            7 CHLIRFANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVV   84 (224)
Q Consensus         7 ~~~~~~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Ly   84 (224)
                      ...+..|++||++.. ++||++|..                 .++|.+++.++...+.+. ..+..|+|||++|.+++||
T Consensus       467 ~~~l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LY  529 (791)
T 3m0c_C          467 SRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  529 (791)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             ecCCCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEE
Confidence            346788999999975 489999954                 568999999855555554 5788899999999877899


Q ss_pred             EEeCCC-CeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           85 VCESWK-FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        85 v~~~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      |++... ++|.+++++|.   ..++++......|.||++|+ +|+||+++...                           
T Consensus       530 wtD~g~~~~I~~~~~dG~---~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~---------------------------  579 (791)
T 3m0c_C          530 WTDWGTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL---------------------------  579 (791)
T ss_dssp             EEECSSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTT---------------------------
T ss_pred             EecCCCCCeEEEEecCCC---ceEEEEeCCCCCceEEEEecCCCeEEEEeCCC---------------------------
Confidence            999765 89999999873   23444433335899999994 68899999776                           


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~  222 (224)
                               .+|.+++.+|.....+....+ .++.+..++.++++||++++.+++|.+++
T Consensus       580 ---------~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          580 ---------HSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             ---------TEEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---------CcEEEEecCCCceEEEecCCC-ccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence                     589999999987666644322 35667777778999999999999999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.70  E-value=5.4e-16  Score=124.65  Aligned_cols=157  Identities=16%  Similarity=0.241  Sum_probs=117.1

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEE
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ..+..|++++++++|++|+++..                 .+.|++++..+...... ......|++|+++++|+ |||+
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~  166 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVT  166 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEE
T ss_pred             CCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEE
Confidence            34578999999999999999843                 56799998654333222 23456899999999997 9999


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      +...++|.+++.++...   ..........|.++++|++|++|+++...                               
T Consensus       167 ~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~~g~l~v~~~~~-------------------------------  212 (270)
T 1rwi_B          167 DTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAGTVYVTEHNT-------------------------------  212 (270)
T ss_dssp             EGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTCCEEEEETTT-------------------------------
T ss_pred             ECCCCEEEEEecCCCce---EeecccCCCCceEEEECCCCCEEEEECCC-------------------------------
Confidence            99889999999876321   11111112579999999999999998876                               


Q ss_pred             CCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeCC
Q 046107          167 GKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       167 ~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~~  224 (224)
                           +.|.+++++|+....+.. .+  +..+..++.+ +|+||+++..+++|.+++++
T Consensus       213 -----~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          213 -----NQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             -----SCEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             -----CcEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence                 579999999876554322 22  3456677655 68999999999999999864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.69  E-value=4.2e-15  Score=123.78  Aligned_cols=157  Identities=16%  Similarity=0.111  Sum_probs=119.5

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC----CeEEEEe-cCccccceeEEecCCCE
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS----KQVSIVL-EGLYFANGVALSKHGDF   82 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~----g~~~~~~-~~~~~pngia~~~dg~~   82 (224)
                      .+..|.++++++ +++||++|..                 .++|+++++++    ...+.+. .++..|.||++++.++.
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~   90 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             CCCceEEEEEEeCCCEEEEEECC-----------------CCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCe
Confidence            367789999997 5689999953                 57899999874    2233333 46789999999987777


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHH
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELIN  161 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  161 (224)
                      ||+++...++|.+++++|.   ..++++......|.++++|+ +|.+|+++....                         
T Consensus        91 ly~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~-------------------------  142 (316)
T 1ijq_A           91 IYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-------------------------  142 (316)
T ss_dssp             EEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-------------------------
T ss_pred             EEEEECCCCEEEEEeCCCC---ceEEEEECCCCCcceEEeCCCCCEEEEEccCCC-------------------------
Confidence            9999999999999999863   23344432335899999997 678999987641                         


Q ss_pred             hhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          162 QLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       162 ~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                ++|.+++++|+....+...   .+..+..++.+  +++||+++...++|.++++
T Consensus       143 ----------~~I~~~~~dG~~~~~~~~~---~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          143 ----------AKIKKGGLNGVDIYSLVTE---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             ----------CEEEEEETTSCCEEEEECS---SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ----------CeEEEEcCCCCCeEEEEEC---CCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence                      5899999999887766432   24567777765  7999999999999999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1.4e-15  Score=133.52  Aligned_cols=162  Identities=12%  Similarity=0.103  Sum_probs=120.7

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC-------CCeE------------EEE--ec
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS-------SKQV------------SIV--LE   66 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-------~g~~------------~~~--~~   66 (224)
                      .+..|+++++++ +|.||+++..                 .+.|+++|++       +++.            +.+  ..
T Consensus       245 ~~~~p~giavdp~~g~LYvtd~~-----------------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~  307 (496)
T 3kya_A          245 AYKQCNGATIHPINGELYFNSYE-----------------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA  307 (496)
T ss_dssp             EESCCCCEEECTTTCCEEEEETT-----------------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS
T ss_pred             cCCCceEEEEcCCCCeEEEEECC-----------------CCEEEEEecccccccccCceeecccccccccccceeEecC
Confidence            356899999999 6899999843                 5789999986       4543            122  22


Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEEccCC--CcccceEeecc--CC------------CCCC-ceEEC------
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLG--DKRDREIFIEN--LP------------GGPD-NINLA------  123 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~--~~~~~~~~~~~--~~------------~~p~-~i~~d------  123 (224)
                      ....|.+|+++|+|++|||+++..++|++++.++.  .+....+++..  ..            ..|. +++++      
T Consensus       308 ~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~  387 (496)
T 3kya_A          308 DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTG  387 (496)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCS
T ss_pred             CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccc
Confidence            34678999999999999999999999999988752  11122333321  11            2588 88887      


Q ss_pred             -CCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCC------------
Q 046107          124 -PDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDP------------  190 (224)
Q Consensus       124 -~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~------------  190 (224)
                       ++|+||||+...                                    .+|.+++++|.+.......            
T Consensus       388 ~~~g~lyVaD~~N------------------------------------~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G  431 (496)
T 3kya_A          388 EEEYDFYFVDRLN------------------------------------FCVRKVTPEGIVSTYAGRGASTSLADGNQWG  431 (496)
T ss_dssp             SCCEEEEEEEGGG------------------------------------TEEEEECTTCBEEEEEESCTTHHHHHSCSCC
T ss_pred             cCCCeEEEEECCC------------------------------------CEEEEEeCCCCEEEEecccccccccCccccc
Confidence             789999999987                                    6899999999776554321            


Q ss_pred             --CC-----CcccceeEEEEE-C-CEEEEEeCCCCeEEEeeC
Q 046107          191 --NA-----KNISFVTSALEF-Q-GNLYLASINSNFIGKLPL  223 (224)
Q Consensus       191 --~g-----~~~~~~t~~~~~-~-g~lyv~~~~~~~i~~~~~  223 (224)
                        +|     ..+..++.++.+ + |+|||++..+++|.++++
T Consensus       432 ~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             CCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence              12     246678888866 3 899999999999999976

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.69  E-value=2.2e-15  Score=127.25  Aligned_cols=156  Identities=17%  Similarity=0.151  Sum_probs=122.1

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEe
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      +..|.++++++ ++.||++|..                 .++|++++++++..+.+ ..++..|+||++++.++.||+++
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~-----------------~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d  134 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVT-----------------LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD  134 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEeccccEEEEEecc-----------------CCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEc
Confidence            56688999995 6899999954                 57899999986555544 45688999999998777899999


Q ss_pred             CCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           88 SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      ...++|.+++++|..   .+++.......|.++++|+ +|.||+++....                              
T Consensus       135 ~~~~~I~~~~~dG~~---~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~------------------------------  181 (349)
T 3v64_C          135 SGTSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT------------------------------  181 (349)
T ss_dssp             TTTTEEEEEETTSCS---CEEEECTTCSCEEEEEEETTTTEEEEEECSSS------------------------------
T ss_pred             CCCCeEEEEcCCCCc---eEEEEeCCCCCcceEEEecCcCeEEEeccCCC------------------------------
Confidence            999999999998732   3344332335799999997 678999987651                              


Q ss_pred             CCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                           .+|.|++++|+....+... +  +..+..++.+  +++||+++...++|.++++
T Consensus       182 -----~~I~r~~~dG~~~~~~~~~-~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          182 -----PRIEASSMDGSGRRIIADT-H--LFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             -----CEEEEEETTSCSCEESCCS-S--CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             -----CEEEEEeCCCCCcEEEEEC-C--CCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence                 5899999999876665332 2  4567777765  7999999999999999975

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.69  E-value=2.8e-15  Score=128.33  Aligned_cols=157  Identities=17%  Similarity=0.144  Sum_probs=123.3

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEE
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      .+..|.+|++++ ++.||++|..                 .++|++++++++..+.+ ..++..|+||++++.++.||++
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~-----------------~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~  176 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVT-----------------LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT  176 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred             CCCccEEEEEecCCCeEEEEeCC-----------------CCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEE
Confidence            366788999995 6799999953                 57899999986655554 4577899999999877789999


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      +...++|.+++++|..   .+++.......|.++++|+ +|.||+++....                             
T Consensus       177 d~~~~~I~~~~~dg~~---~~~l~~~~l~~P~giavdp~~g~ly~td~~~~-----------------------------  224 (386)
T 3v65_B          177 DSGTSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-----------------------------  224 (386)
T ss_dssp             ETTTTEEEECBTTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEECSSS-----------------------------
T ss_pred             cCCCCeEEEEeCCCCc---eEEeecCCCCCCcEEEEEcCCCeEEEeccCCC-----------------------------
Confidence            9999999999998732   3344332335799999997 578999987652                             


Q ss_pred             cCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                            .+|.+++++|+....+... +  +..+..++.+  +++||+++...++|.++++
T Consensus       225 ------~~I~r~~~dG~~~~~~~~~-~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          225 ------PRIEASSMDGSGRRIIADT-H--LFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             ------CEEEEEETTSCSCEEEECS-S--CSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             ------CEEEEEeCCCCCcEEEEEC-C--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence                  5899999999877766542 2  4467777764  7999999999999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=1.7e-15  Score=127.25  Aligned_cols=155  Identities=16%  Similarity=0.179  Sum_probs=108.0

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC---------------------
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG---------------------   67 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~---------------------   67 (224)
                      ..++|++++++ +|.+|++|.+.              ...+.|+++|.++++...+.++                     
T Consensus       119 ~~~~~~v~vd~~~g~~yvtd~~~--------------~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~  184 (343)
T 2qe8_A          119 NSFVNDLAVDLIHNFVYISDPAP--------------DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG  184 (343)
T ss_dssp             TCCCCEEEEETTTTEEEEEECCS--------------GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE
T ss_pred             ccccceEEEecCCCEEEEEcCcc--------------CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec
Confidence            35789999996 57999999631              0134566666554443332211                     


Q ss_pred             ---------ccccceeEEecCCCEEEEEeCCCCeEEEEEcc---CCCcccceEeec----cCCCCCCceEECCCCCEEEE
Q 046107           68 ---------LYFANGVALSKHGDFVVVCESWKFRCIKHWLK---LGDKRDREIFIE----NLPGGPDNINLAPDGSFWIS  131 (224)
Q Consensus        68 ---------~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~---~~~~~~~~~~~~----~~~~~p~~i~~d~dG~l~va  131 (224)
                               ...+|||+++|||++||+++..+++|++++.+   ...+.+.+++..    ...+.|+||++|++|++|++
T Consensus       185 ~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va  264 (343)
T 2qe8_A          185 QPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG  264 (343)
T ss_dssp             CTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE
T ss_pred             cCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE
Confidence                     13479999999999999999999999999864   111222111110    12348999999999999999


Q ss_pred             EecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CCEEE
Q 046107          132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QGNLY  209 (224)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g~ly  209 (224)
                      +...                                    ++|.++|+ +|++......+   .+..++.++.+ +|+||
T Consensus       265 ~~~~------------------------------------~~V~~~d~~~G~~~~~~~~~---~~~~p~~va~~~~g~l~  305 (343)
T 2qe8_A          265 DLAH------------------------------------SAIGVITSADRAYKLLVTDE---KLSWTDSFNFGSDGYLY  305 (343)
T ss_dssp             EGGG------------------------------------TEEEEEETTTTEEEEEEECG---GGSCEEEEEECTTSCEE
T ss_pred             ccCC------------------------------------CeEEEEECCCCCEEEEEECC---ceecCCeeEECCCCcEE
Confidence            9887                                    68999999 89876666544   24567777764 68999


Q ss_pred             EEeCCCCe
Q 046107          210 LASINSNF  217 (224)
Q Consensus       210 v~~~~~~~  217 (224)
                      +++...++
T Consensus       306 v~~~~~~~  313 (343)
T 2qe8_A          306 FDCNQLHH  313 (343)
T ss_dssp             EEECCGGG
T ss_pred             EEeCcccc
Confidence            99875443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.66  E-value=5.7e-15  Score=128.29  Aligned_cols=154  Identities=13%  Similarity=0.097  Sum_probs=115.5

Q ss_pred             ccccccceEEecC---CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEE
Q 046107            9 LIRFANDVIEASD---GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         9 ~~~~~n~v~~~~~---G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv   85 (224)
                      .|..|.+|+++++   |+||++|.                 . ++|+++++++++++.+...+..|++|+++++|+ |||
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~-----------------~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyV  197 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQ-----------------R-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVV  197 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECB-----------------T-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEE
T ss_pred             ccCCCceEEEccccCCCEEEEEeC-----------------C-CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEE
Confidence            6889999999984   89999983                 1 679999997788888888888999999999999 999


Q ss_pred             EeCCC----CeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           86 CESWK----FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        86 ~~~~~----~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      ++...    ..++.+...+.... ...+.  ....|.++++|+ +|+||+++...                         
T Consensus       198 ad~~~~~~~~gv~~~~~~~~~~~-~~~~~--~~~~P~giavd~~~G~lyv~d~~~-------------------------  249 (433)
T 4hw6_A          198 VDDQSSDTNTGIYLFTRASGFTE-RLSLC--NARGAKTCAVHPQNGKIYYTRYHH-------------------------  249 (433)
T ss_dssp             EECCSCTTSEEEEEECGGGTTCC-EEEEE--ECSSBCCCEECTTTCCEEECBTTC-------------------------
T ss_pred             EcCCCCcccceEEEEECCCCeec-ccccc--ccCCCCEEEEeCCCCeEEEEECCC-------------------------
Confidence            99743    34666766543221 12222  235799999999 89999999876                         


Q ss_pred             HhhhhcCCCceEEEEEECCC-CcEEE-EEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSAN-GSIIR-EFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~-G~~~~-~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                 ++|++++++ |+... .+.....   +....++.+  ++.||+++..+++|.++++
T Consensus       250 -----------~~V~~~d~~~g~~~~~~~~~~~~---~~~~~ia~dpdG~~LYvad~~~~~I~~~~~  302 (433)
T 4hw6_A          250 -----------AMISSYDPATGTLTEEEVMMDTK---GSNFHIVWHPTGDWAYIIYNGKHCIYRVDY  302 (433)
T ss_dssp             -----------SEEEEECTTTCCEEEEEEECSCC---SSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred             -----------CEEEEEECCCCeEEEEEeccCCC---CCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence                       689999998 77733 3333221   223344543  4469999999999999874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.66  E-value=8.8e-15  Score=122.19  Aligned_cols=156  Identities=21%  Similarity=0.184  Sum_probs=120.5

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe--EEEEecCccccceeEEecCCCEEEEE
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ--VSIVLEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~--~~~~~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      +..+.+|++++ ++.||++|..                 .++|++++++++.  ...+..++..|.|||+++.++.||++
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~-----------------~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~   96 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVS-----------------EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWT   96 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETT-----------------TTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEE
T ss_pred             CCccEEEEEEeCCCEEEEEECC-----------------CCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEE
Confidence            45566778876 5799999954                 5789999987542  23456678899999999877789999


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      +...++|.+++++|..   .+++.......|.++++|+ +|.||+++...+                             
T Consensus        97 d~~~~~I~~~~~dG~~---~~~l~~~~~~~P~giavdp~~g~ly~td~~~~-----------------------------  144 (318)
T 3sov_A           97 DSETNRIEVSNLDGSL---RKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-----------------------------  144 (318)
T ss_dssp             ETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEEGGGTEEEEEECSSS-----------------------------
T ss_pred             ECCCCEEEEEECCCCc---EEEEEeCCCCCccEEEEeCCCCEEEEEecCCC-----------------------------
Confidence            9999999999998732   3344433335799999997 588999997631                             


Q ss_pred             cCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                            .+|.+++++|+....+... +  +..+..++.+  +++||+++...++|.++++
T Consensus       145 ------~~I~r~~~dG~~~~~~~~~-~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          145 ------PKIERAGMDGSSRFIIINS-E--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             ------CEEEEEETTSCSCEEEECS-S--CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ------CEEEEEEcCCCCeEEEEEC-C--CCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence                  6899999999876666432 2  4567777765  7999999999999999976

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.65  E-value=1e-14  Score=125.46  Aligned_cols=157  Identities=15%  Similarity=0.092  Sum_probs=120.3

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC----CeEEE-EecCccccceeEEecCCCE
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS----KQVSI-VLEGLYFANGVALSKHGDF   82 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~----g~~~~-~~~~~~~pngia~~~dg~~   82 (224)
                      .+..|.+|++++ ++.||++|..                 .+.|+++++++    ...+. +..++..|.|||+++.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~  172 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN  172 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE
T ss_pred             ccCcceEEeeeeccCceEEEecC-----------------CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc
Confidence            367888999996 6799999954                 56899999874    12333 3457889999999986667


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHH
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELIN  161 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  161 (224)
                      ||+++...++|.+++++|..   .++++......|.+|++|+ +|.||+++++.+                         
T Consensus       173 lY~~d~~~~~I~~~~~~g~~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~-------------------------  224 (400)
T 3p5b_L          173 IYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-------------------------  224 (400)
T ss_dssp             EEEEETTTTEEEEECTTTCS---EEEEEECSSCCEEEEEEETTTTEEEEEECSSS-------------------------
T ss_pred             eEEEECCCCeEEEEeCCCCc---eEEEEeCCCCCcceEEEecccCeEEEEeCCCC-------------------------
Confidence            99999999999999998732   3344432334799999998 578999997642                         


Q ss_pred             hhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          162 QLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       162 ~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                .+|.+++++|+....+... +  +..+..++.+  +++||+++...++|.++++
T Consensus       225 ----------~~I~~~~~dG~~~~~~~~~-~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~  275 (400)
T 3p5b_L          225 ----------AKIKKGGLNGVDIYSLVTE-N--IQWPNGITLDLLSGRLYWVDSKLHSISSIDV  275 (400)
T ss_dssp             ----------CCEEEEETTSCSCEEEECS-S--CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ----------CEEEEEeCCCCccEEEEEC-C--CCceEEEEEEeCCCEEEEEECCCCEEEEEeC
Confidence                      5799999999877666442 2  4567777765  7999999999999999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=2.1e-14  Score=116.58  Aligned_cols=157  Identities=12%  Similarity=0.177  Sum_probs=117.2

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec------CccccceeEEe-cCC
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE------GLYFANGVALS-KHG   80 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~------~~~~pngia~~-~dg   80 (224)
                      ..+..|.+|+++++|++|+++..                 .+.|.++++++.....+..      ....|++|+++ +++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~-----------------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g   89 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTN-----------------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG   89 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT
T ss_pred             CccCCCceEEECCCCCEEEEECC-----------------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC
Confidence            35789999999999999999843                 5789999987443333321      24578999995 666


Q ss_pred             CEEEEEeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107           81 DFVVVCESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL  159 (224)
Q Consensus        81 ~~Lyv~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (224)
                       .|||++.. .++|.+++.++..   ...+.......|.+++++++|++|+++...                        
T Consensus        90 -~l~v~~~~~~~~i~~~d~~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------------------------  141 (286)
T 1q7f_A           90 -DIIVTERSPTHQIQIYNQYGQF---VRKFGATILQHPRGVTVDNKGRIIVVECKV------------------------  141 (286)
T ss_dssp             -EEEEEECGGGCEEEEECTTSCE---EEEECTTTCSCEEEEEECTTSCEEEEETTT------------------------
T ss_pred             -eEEEEcCCCCCEEEEECCCCcE---EEEecCccCCCceEEEEeCCCCEEEEECCC------------------------
Confidence             59999964 7899999976522   222221122478999999999999998766                        


Q ss_pred             HHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          160 INQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       160 ~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                                  +.|.+++++|+.+..+..+..  +..+..++.+ +|++|+++..+++|.+++.
T Consensus       142 ------------~~i~~~~~~g~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  192 (286)
T 1q7f_A          142 ------------MRVIIFDQNGNVLHKFGCSKH--LEFPNGVVVNDKQEIFISDNRAHCVKVFNY  192 (286)
T ss_dssp             ------------TEEEEECTTSCEEEEEECTTT--CSSEEEEEECSSSEEEEEEGGGTEEEEEET
T ss_pred             ------------CEEEEEcCCCCEEEEeCCCCc--cCCcEEEEECCCCCEEEEECCCCEEEEEcC
Confidence                        589999999998888764322  3456666655 6899999999999999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=1.4e-14  Score=116.37  Aligned_cols=155  Identities=17%  Similarity=0.242  Sum_probs=114.8

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEE
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ..+..|.+|+++++|++|+++.                  .+.|++++++++....+. .....|++|+++++|+ |||+
T Consensus        64 ~~~~~p~~i~~~~~g~l~v~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~  124 (270)
T 1rwi_B           64 NGLYQPQGLAVDGAGTVYVTDF------------------NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVA  124 (270)
T ss_dssp             CSCCSCCCEEECTTCCEEEEET------------------TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEE
T ss_pred             CCcCCcceeEECCCCCEEEEcC------------------CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEE
Confidence            3456899999999999999972                  367999998755444332 3457899999999997 9999


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      +...++|++++....   ............|.++++|++|++|+++...                               
T Consensus       125 ~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~-------------------------------  170 (270)
T 1rwi_B          125 DRGNNRVVKLAAGSK---TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN-------------------------------  170 (270)
T ss_dssp             EGGGTEEEEECTTCC---SCEECCCCSCCSCCCEEECTTCCEEEEEGGG-------------------------------
T ss_pred             ECCCCEEEEEECCCc---eeEeeccccCCCceeEEEeCCCCEEEEECCC-------------------------------
Confidence            988899999965321   1111111112479999999999999998876                               


Q ss_pred             CCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                           +.|.++++++......... +  +..+..++.+ +|+||+++..+++|.+++.
T Consensus       171 -----~~i~~~~~~~~~~~~~~~~-~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          171 -----NRVVKLEAESNNQVVLPFT-D--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             -----TEEEEECTTTCCEEECCCS-S--CCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred             -----CEEEEEecCCCceEeeccc-C--CCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence                 5899999988654443221 1  2456677665 5799999999999999875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=1.7e-14  Score=119.58  Aligned_cols=167  Identities=19%  Similarity=0.215  Sum_probs=120.0

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...+++++++++|++|+++....           .....+.|+++++++++.+.+......|++++++|||+.||+++..
T Consensus       134 ~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  202 (333)
T 2dg1_A          134 AYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  202 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             CCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC
Confidence            45689999999999999985310           0123578999999866776666666789999999999999999988


Q ss_pred             CCeEEEEEcc--CCCcccc--eEeeccC-CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           90 KFRCIKHWLK--LGDKRDR--EIFIENL-PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        90 ~~~I~~~~~~--~~~~~~~--~~~~~~~-~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                      .++|++|+++  +......  ..+.... ...|+++++|++|++|++....                             
T Consensus       203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-----------------------------  253 (333)
T 2dg1_A          203 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----------------------------  253 (333)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----------------------------
T ss_pred             CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC-----------------------------
Confidence            8999999985  2211111  1221111 1378999999999999998776                             


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCC--cccceeEEEEE--CCEEEEEeCCC-----CeEEEeeC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAK--NISFVTSALEF--QGNLYLASINS-----NFIGKLPL  223 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~--~~~~~t~~~~~--~g~lyv~~~~~-----~~i~~~~~  223 (224)
                             +.|.++|++|+.+..+..+...  .+..++.++..  +++||+++..+     ..|.++++
T Consensus       254 -------~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          254 -------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             -------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             -------CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence                   5799999999988888765320  11234555543  46999998763     37777765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.64  E-value=2.2e-14  Score=132.78  Aligned_cols=156  Identities=15%  Similarity=0.091  Sum_probs=121.2

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC----eEEEE-ecCccccceeEEecCCCEE
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK----QVSIV-LEGLYFANGVALSKHGDFV   83 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g----~~~~~-~~~~~~pngia~~~dg~~L   83 (224)
                      +..|.+|+++. +++||++|..                 .++|++++.++.    ..+.+ ..++..|.|||++..++.|
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~-----------------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~L  485 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI  485 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEE
T ss_pred             CCceEEEeecccCCeeEEeecc-----------------ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcE
Confidence            66788999997 6799999954                 467999888632    22334 4478999999999988889


Q ss_pred             EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           84 VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      ||++...++|.+++++|.   ..++++......|.+|++|+. |.||+++++..                          
T Consensus       486 Y~tD~~~~~I~v~~ldG~---~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~--------------------------  536 (791)
T 3m0c_C          486 YWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP--------------------------  536 (791)
T ss_dssp             EEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSS--------------------------
T ss_pred             EEEecCCCeEEEEeCCCC---eEEEEEeCCCCCcceEEEecCCCCEEEecCCCC--------------------------
Confidence            999999999999999873   234444323347999999985 88999997752                          


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                               .+|.+++++|+....+... +  +..+..++.+  +++||+++...++|.++++
T Consensus       537 ---------~~I~~~~~dG~~~~~lv~~-~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          537 ---------AKIKKGGLNGVDIYSLVTE-N--IQWPNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             ---------CEEEEEETTSCCEEEEECS-S--CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ---------CeEEEEecCCCceEEEEeC-C--CCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence                     5899999999887776542 2  4567777766  7999999999999999976

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.64  E-value=2e-15  Score=138.35  Aligned_cols=158  Identities=14%  Similarity=0.091  Sum_probs=119.9

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEE
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~   86 (224)
                      .+..|.+|+++. .|+||++|..                 .++|+++++++...+.+. .++..|+||+++|++++|||+
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~t  513 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWT  513 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEEC
T ss_pred             CCCCcceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEc
Confidence            356799999994 6799999843                 467999998855555554 467899999999987789999


Q ss_pred             eCCC-CeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           87 ESWK-FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        87 ~~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                      +... ++|++++++|..   .++++......|+||++|++ ++||+++...                             
T Consensus       514 d~~~~~~I~~~~~dG~~---~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~-----------------------------  561 (699)
T 1n7d_A          514 DWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL-----------------------------  561 (699)
T ss_dssp             CCSSSCCEEBCCSSSCC---CCEESCSSCSSCCCEEECTTTCCEEEEETTT-----------------------------
T ss_pred             ccCCCCeEEEEeCCCCC---eeEEEeCCCCCccEEEEeccCCEEEEEecCC-----------------------------
Confidence            9765 899999998732   23343222357999999975 7899999776                             


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                             .+|.+++.+|...+.+....+ .+..+..++.++++||++++.+++|.+++.
T Consensus       562 -------~~I~~~d~dG~~~~~~~~~~~-~~~~P~glavd~~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          562 -------HSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             -------TEEEEECSSSSCCEEECCCSS-SCSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred             -------CeEEEEccCCCceEEEEecCC-cCCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence                   689999999876666643222 245666777788899999999999999863

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.63  E-value=2.4e-14  Score=129.75  Aligned_cols=158  Identities=10%  Similarity=0.113  Sum_probs=123.2

Q ss_pred             eeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCE
Q 046107            5 HLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDF   82 (224)
Q Consensus         5 ~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~   82 (224)
                      +-...+..|++||+|. .|+||++|..                 .++|.+++.++...+.+. ..+..|++|+++|..+.
T Consensus        74 v~~~g~~~P~GlAvD~~~~~LY~tD~~-----------------~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~  136 (628)
T 4a0p_A           74 VVEFGLDYPEGMAVDWLGKNLYWADTG-----------------TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGF  136 (628)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTE
T ss_pred             EEeCCCCCcceEEEEeCCCEEEEEECC-----------------CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCe
Confidence            3344567899999996 5789999954                 578999998754444444 67899999999997668


Q ss_pred             EEEEeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           83 VVVCESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        83 Lyv~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      ||+++.. ..+|++++++|.   ..+++.+. ...|.||++|++ ++||+++...                         
T Consensus       137 lY~tD~g~~~~I~r~~~dG~---~~~~l~~~-~~~P~GlalD~~~~~LY~aD~~~-------------------------  187 (628)
T 4a0p_A          137 MYWTEWGGKPKIDRAAMDGS---ERTTLVPN-VGRANGLTIDYAKRRLYWTDLDT-------------------------  187 (628)
T ss_dssp             EEEEECSSSCEEEEEETTSC---SCEEEECS-CSSEEEEEEETTTTEEEEEETTT-------------------------
T ss_pred             EEEeCCCCCCEEEEEeCCCC---ceEEEECC-CCCcceEEEccccCEEEEEECCC-------------------------
Confidence            9999965 789999999874   34444432 357999999985 7799999877                         


Q ss_pred             HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                 ..|.+++.+|...+.+...    ++.+..++.++++||++++.+++|.+++.
T Consensus       188 -----------~~I~~~d~dG~~~~v~~~~----l~~P~glav~~~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          188 -----------NLIESSNMLGLNREVIADD----LPHPFGLTQYQDYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             -----------TEEEEEETTSCSCEEEEEC----CSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             -----------CEEEEEcCCCCceEEeecc----CCCceEEEEECCEEEEecCCCCEEEEEEC
Confidence                       6899999998655555431    34566777788999999999999999873

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.63  E-value=3.9e-14  Score=128.18  Aligned_cols=157  Identities=21%  Similarity=0.175  Sum_probs=122.0

Q ss_pred             ccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe--EEEEecCccccceeEEecCCCEEEE
Q 046107            9 LIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ--VSIVLEGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         9 ~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~--~~~~~~~~~~pngia~~~dg~~Lyv   85 (224)
                      .+..|.+|++++ +|.||++|..                 .++|+++++++..  ...+..++..|+|||+++.++.||+
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~-----------------~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~  100 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVS-----------------EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYW  100 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECC-----------------CCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEE
Confidence            467788999997 6789999953                 5789999987432  2344567789999999997778999


Q ss_pred             EeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                      ++...++|.+++++|.   ..+++.......|.+|++|+. |.||+++++.+                            
T Consensus       101 ~d~~~~~I~v~~~dG~---~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~----------------------------  149 (619)
T 3s94_A          101 TDSETNRIEVSNLDGS---LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV----------------------------  149 (619)
T ss_dssp             EETTTTEEEEEETTSC---SCEEEECSSCSCCCCEEEETTTTEEEEEECSSS----------------------------
T ss_pred             EeCCCCEEEEEECCCC---CEEEEEeCCCCCCceEEEecCCCeEEEeccCCC----------------------------
Confidence            9999999999999873   234444333357999999985 78999998742                            


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                             .+|.|.+++|+....+....   +..+..++.+  +++||+++...++|.++++
T Consensus       150 -------~~I~r~~~dG~~~~~l~~~~---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~  200 (619)
T 3s94_A          150 -------PKIERAGMDGSSRFIIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  200 (619)
T ss_dssp             -------CEEEEEETTSCSCEEEECSS---CSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred             -------CEEEEEECCCCceEEEEeCC---CCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence                   58999999998777665432   4567777766  7999999999999999876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=2.1e-14  Score=124.56  Aligned_cols=155  Identities=13%  Similarity=0.086  Sum_probs=118.8

Q ss_pred             ccccccceEEec--CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEE
Q 046107            9 LIRFANDVIEAS--DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         9 ~~~~~n~v~~~~--~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      .+..|.+|++++  +|+||++|.                 . ++|.++|+++++++.+......|++|+++++|++|||+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~-----------------~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyva  196 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGE-----------------Q-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIIT  196 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEB-----------------T-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCCEEEECCCCCCeEEEEeC-----------------C-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEE
Confidence            478999999995  589999982                 1 78999999877888888888999999999999999999


Q ss_pred             eCCCC----eEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHH
Q 046107           87 ESWKF----RCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELIN  161 (224)
Q Consensus        87 ~~~~~----~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  161 (224)
                      +...+    .++.++.++... ....+..  ...|.++++|+ +|+||+++...                          
T Consensus       197 d~~~~~~~~~v~~~~~~g~~~-~~~~l~~--~~~p~giavdp~~g~lyv~d~~~--------------------------  247 (430)
T 3tc9_A          197 NDQNNNDRPNNYILTRESGFK-VITELTK--GQNCNGAETHPINGELYFNSWNA--------------------------  247 (430)
T ss_dssp             ECCSCTTSEEEEEEEGGGTSC-SEEEEEE--CSSCCCEEECTTTCCEEEEETTT--------------------------
T ss_pred             eCCCCcccceEEEEeCCCcee-eeeeecc--CCCceEEEEeCCCCEEEEEECCC--------------------------
Confidence            97543    567677765321 1223321  34799999999 89999999877                          


Q ss_pred             hhhhcCCCceEEEEEECCCCcEE-EEEeCCCCCcccceeEEEEE-CC-EEEEEeCCCCeEEEeeC
Q 046107          162 QLMSTGKGAAAKVVKVSANGSII-REFNDPNAKNISFVTSALEF-QG-NLYLASINSNFIGKLPL  223 (224)
Q Consensus       162 ~~~~~~~~~~~~v~~~~~~G~~~-~~~~~~~g~~~~~~t~~~~~-~g-~lyv~~~~~~~i~~~~~  223 (224)
                                ++|+++++++... .....+.+   ..+..++.+ +| .||+++..+++|.+++.
T Consensus       248 ----------~~V~~~~~~~~~~~~~~~~~~~---~~P~gia~~pdG~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          248 ----------GQVFRYDFTTQETTPLFTIQDS---GWEFHIQFHPSGNYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             ----------TEEEEEETTTTEEEEEEECSSS---SCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ----------CEEEEEECCCCcEEEEEEcCCC---CcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence                      6899999997665 33333332   345666654 44 49999999999999863

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.63  E-value=1.5e-14  Score=130.87  Aligned_cols=160  Identities=13%  Similarity=0.077  Sum_probs=120.0

Q ss_pred             eeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCE
Q 046107            5 HLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDF   82 (224)
Q Consensus         5 ~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~   82 (224)
                      +-...+..|+++|+|. .++||++|..                 .++|.+++.++...+.+. ..+..|++|+++|.+++
T Consensus        78 v~~~~~~~P~GlAvD~~~~~ly~~d~~-----------------~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~  140 (619)
T 3s94_A           78 VVVSGLLSPDGLACDWLGEKLYWTDSE-----------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF  140 (619)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTE
T ss_pred             EEeCCCCCcCeEEEEecCCEEEEEeCC-----------------CCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCe
Confidence            3344578999999998 5789999954                 578999999854444454 67899999999998778


Q ss_pred             EEEEeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           83 VVVCESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        83 Lyv~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      ||+++.. ..+|.+.+++|.   ..+++.......|.||++|++ ++||+++...                         
T Consensus       141 ly~tD~g~~~~I~r~~~dG~---~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~-------------------------  192 (619)
T 3s94_A          141 MYWTDWGEVPKIERAGMDGS---SRFIIINSEIYWPNGLTLDYEEQKLYWADAKL-------------------------  192 (619)
T ss_dssp             EEEEECSSSCEEEEEETTSC---SCEEEECSSCSSEEEEEEETTTTEEEEEETTT-------------------------
T ss_pred             EEEeccCCCCEEEEEECCCC---ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCC-------------------------
Confidence            9999965 579999999873   233444323357999999974 7899998876                         


Q ss_pred             HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                 ..|.+++.+|.....+....   +..+..++.++++||++++.+++|.+++.
T Consensus       193 -----------~~I~~~~~dG~~~~~~~~~~---~~~P~gi~~~~~~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          193 -----------NFIHKSNLDGTNRQAVVKGS---LPHPFALTLFEDILYWTDWSTHSILACNK  241 (619)
T ss_dssp             -----------CCEEEESSSCCEEC------------CCCEEESSSEEEEECTTTCSEEEEES
T ss_pred             -----------CeEEEecCCCCccEEEEeCC---CCCceEEEEeCCEEEEecCCCCEEEEEEC
Confidence                       68999999997665553211   34455666778899999999999999874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.62  E-value=4.3e-14  Score=128.07  Aligned_cols=155  Identities=17%  Similarity=0.173  Sum_probs=123.5

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEe
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      +..|.+|++++ +|+||++|..                 .++|+++++++...+.+ ..++..|+|||++..++.||+++
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~-----------------~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD   98 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDIS-----------------LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWAD   98 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEECCCCEEEEEECC-----------------CCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEE
Confidence            56788999997 6799999954                 57899999885555544 44678899999998877899999


Q ss_pred             CCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           88 SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      ...++|.+++++|..   .+++.......|.+|++|+ +|.||+++++.+                              
T Consensus        99 ~~~~~I~v~~~dG~~---~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~------------------------------  145 (628)
T 4a0p_A           99 TGTNRIEVSKLDGQH---RQVLVWKDLDSPRALALDPAEGFMYWTEWGGK------------------------------  145 (628)
T ss_dssp             TTTTEEEEEETTSTT---CEEEECSSCCCEEEEEEETTTTEEEEEECSSS------------------------------
T ss_pred             CCCCEEEEEecCCCc---EEEEEeCCCCCcccEEEccCCCeEEEeCCCCC------------------------------
Confidence            999999999998732   3444432335799999997 689999998642                              


Q ss_pred             CCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                           .+|.+++++|.....+..  +  +..+..++.+  +++||+++...++|.++++
T Consensus       146 -----~~I~r~~~dG~~~~~l~~--~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          146 -----PKIDRAAMDGSERTTLVP--N--VGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             -----CEEEEEETTSCSCEEEEC--S--CSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             -----CEEEEEeCCCCceEEEEC--C--CCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence                 689999999987776653  2  4567777766  6999999999999999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=8.4e-14  Score=112.86  Aligned_cols=152  Identities=13%  Similarity=0.128  Sum_probs=116.1

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEe
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      ...|++++++++|++|+++..                 .+.|++++++ ++.....  .....|++|+++++|+ ||+++
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~  163 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTE  163 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEE
T ss_pred             CCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEe
Confidence            367899999999999999843                 4689999998 6665442  2467899999999998 99999


Q ss_pred             CCCCeEEEEEccCCCcccceEee-ccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           88 SWKFRCIKHWLKLGDKRDREIFI-ENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      ...+.|+++++++.    ...+. ......|.++++|++|++|+++...                               
T Consensus       164 ~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-------------------------------  208 (300)
T 2qc5_A          164 NQNNSIGRITNTGK----LEEYPLPTNAAAPVGITSGNDGALWFVEIMG-------------------------------  208 (300)
T ss_dssp             TTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECTTSSEEEEETTT-------------------------------
T ss_pred             cCCCeEEEECCCCc----EEEeeCCCCCCCcceEEECCCCCEEEEccCC-------------------------------
Confidence            98899999998542    22221 1122468999999999999998766                               


Q ss_pred             CCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                           +.|.+++++|+.... ..+.+  ...+..++.+ +|+||+++..++.|.+++.
T Consensus       209 -----~~i~~~~~~g~~~~~-~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          209 -----NKIGRITTTGEISEY-DIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             -----TEEEEECTTCCEEEE-ECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             -----CEEEEEcCCCcEEEE-ECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence                 579999998887554 33322  2456666655 6899999999999999874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.60  E-value=3.3e-14  Score=120.25  Aligned_cols=162  Identities=12%  Similarity=0.156  Sum_probs=110.6

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe------cCccccceeEEecC---
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL------EGLYFANGVALSKH---   79 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~------~~~~~pngia~~~d---   79 (224)
                      .+..|.+|++++||++||++.                  .|+|++++ + ++.+.+.      .+...|+||+++||   
T Consensus        29 ~l~~P~~ia~~pdG~l~V~e~------------------~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~   88 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLIAER------------------PGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQ   88 (352)
T ss_dssp             CCSCEEEEEECTTSCEEEEET------------------TTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTT
T ss_pred             CCCCceEEEEcCCCeEEEEeC------------------CCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCC
Confidence            488999999999999999983                  37899998 4 5554332      34678999999998   


Q ss_pred             CCEEEEEeCCC-----CeEEEEEccCCCcccceEeeccCC------CCCCceEECCCCCEEEEEecCCchhhhhhccChh
Q 046107           80 GDFVVVCESWK-----FRCIKHWLKLGDKRDREIFIENLP------GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKN  148 (224)
Q Consensus        80 g~~Lyv~~~~~-----~~I~~~~~~~~~~~~~~~~~~~~~------~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~  148 (224)
                      ++.|||+++..     ++|++++.++..+.+.+++++..+      ..|.+|++++||+||++.+...+...   ..   
T Consensus        89 ~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~---~~---  162 (352)
T 2ism_A           89 EPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYEREL---AQ---  162 (352)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGG---GG---
T ss_pred             CCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCcc---cc---
Confidence            66899999754     799999987544444445443222      26899999999999999876532100   00   


Q ss_pred             HHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcE-------------EEEEeCCCCCcccceeEEEEE--CCEEEEEeC
Q 046107          149 RKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSI-------------IREFNDPNAKNISFVTSALEF--QGNLYLASI  213 (224)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~-------------~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~  213 (224)
                                       ......++|+|++++|++             .+.+..  |  +.++..++.+  +|+||+++.
T Consensus       163 -----------------d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~--G--~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          163 -----------------DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSL--G--HRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             -----------------CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEE--C--CSEECCCEECTTTCCEEEEEE
T ss_pred             -----------------CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEE--c--CCCcccEEEECCCCCEEEEEc
Confidence                             001122799999999943             122221  1  2345555554  689999999


Q ss_pred             CCCe
Q 046107          214 NSNF  217 (224)
Q Consensus       214 ~~~~  217 (224)
                      ..+.
T Consensus       222 g~~~  225 (352)
T 2ism_A          222 GPSG  225 (352)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            8776

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.60  E-value=1.7e-13  Score=113.20  Aligned_cols=154  Identities=14%  Similarity=0.181  Sum_probs=111.8

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ..|++++++++|+|||+|..                 .++|+++++++ +..........|+||++++||+ |||++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~-----------------~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~-l~vad~~~   92 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHE-----------------VGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGD-LVATGWNA   92 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTC-CEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeCC-----------------CCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCc-EEEEeccC
Confidence            68999999999999999843                 57899999984 4554555556899999999998 99999653


Q ss_pred             --CeEEEEEccCCCcccceEeecc-CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           91 --FRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        91 --~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                        .+|++++..++   +.+.+.+. ....|++++..+++++|+++...                                
T Consensus        93 ~~~~v~~~d~~~g---~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~--------------------------------  137 (306)
T 2p4o_A           93 DSIPVVSLVKSDG---TVETLLTLPDAIFLNGITPLSDTQYLTADSYR--------------------------------  137 (306)
T ss_dssp             TSCEEEEEECTTS---CEEEEEECTTCSCEEEEEESSSSEEEEEETTT--------------------------------
T ss_pred             CcceEEEEcCCCC---eEEEEEeCCCccccCcccccCCCcEEEEECCC--------------------------------
Confidence              46999886542   23333322 12367899988888899988655                                


Q ss_pred             CCceEEEEEECCCCcEEEEE-e-------CCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          168 KGAAAKVVKVSANGSIIREF-N-------DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       168 ~~~~~~v~~~~~~G~~~~~~-~-------~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                          +.|+++|+++...+.+ .       .+.+ .+..+..+..++++||+++..+++|.++++
T Consensus       138 ----g~i~~~d~~~~~~~v~~~~~~~~~~~~~~-~~~~pngis~dg~~lyv~d~~~~~I~~~~~  196 (306)
T 2p4o_A          138 ----GAIWLIDVVQPSGSIWLEHPMLARSNSES-VFPAANGLKRFGNFLYVSNTEKMLLLRIPV  196 (306)
T ss_dssp             ----TEEEEEETTTTEEEEEEECGGGSCSSTTC-CSCSEEEEEEETTEEEEEETTTTEEEEEEB
T ss_pred             ----CeEEEEeCCCCcEeEEEECCccccccccC-CCCcCCCcCcCCCEEEEEeCCCCEEEEEEe
Confidence                6899999874321111 1       1112 234556666678899999999999999986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=1.5e-13  Score=118.38  Aligned_cols=158  Identities=8%  Similarity=0.022  Sum_probs=117.4

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      .+..|.+|+++++|+||+++..                 .++|.++|+++++++.+......|. ++++++++.||+++.
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~-----------------~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~  190 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRD-----------------DPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGW  190 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETT-----------------TTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBS
T ss_pred             ccCCceEEEEeCCCCEEEEecC-----------------CCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEec
Confidence            5889999999999999999843                 5689999998788887777777788 999999999999997


Q ss_pred             CCC-eEEEEEccCCCcccceEee---ccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           89 WKF-RCIKHWLKLGDKRDREIFI---ENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        89 ~~~-~I~~~~~~~~~~~~~~~~~---~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ..+ +|++++..+...  ...+.   ......|.++++++ +|+||+++. .                            
T Consensus       191 ~~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~----------------------------  239 (409)
T 3hrp_A          191 EGTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-N----------------------------  239 (409)
T ss_dssp             STTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEECT-T----------------------------
T ss_pred             CCCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-C----------------------------
Confidence            655 999999875321  11221   11235799999999 799999654 3                            


Q ss_pred             hhcCCCceEEEEEECCCCcEEEEEeC--CCCCccccee-EEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSANGSIIREFND--PNAKNISFVT-SALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~~~~~--~~g~~~~~~t-~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                              ++|+++++++.....+..  ..+..-..+. .++.+  +++||+++..+++|.+++.
T Consensus       240 --------~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          240 --------KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             --------CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             --------CcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence                    589999998655454411  1111111222 55544  6999999999999999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=2.1e-13  Score=110.45  Aligned_cols=152  Identities=15%  Similarity=0.121  Sum_probs=116.0

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--CccccceeEEecCCCEEEEEe
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--GLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--~~~~pngia~~~dg~~Lyv~~   87 (224)
                      ...|.+++++++|++|+++..                 .+.|++++++ ++...+..  ....|++|+++++|+ |||++
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~-----------------~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~  121 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENG-----------------ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQ  121 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEE
T ss_pred             CCcceeEEECCCCCEEEEecC-----------------CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEc
Confidence            467899999999999999743                 4689999998 66654432  347789999999987 99999


Q ss_pred             CCCCeEEEEEccCCCcccceEee-ccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           88 SWKFRCIKHWLKLGDKRDREIFI-ENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      ...+.|+++++++.    ...+. ......|.++++|++|++|+++...                               
T Consensus       122 ~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-------------------------------  166 (300)
T 2qc5_A          122 LNGDRIGKLTADGT----IYEYDLPNKGSYPAFITLGSDNALWFTENQN-------------------------------  166 (300)
T ss_dssp             TTTTEEEEECTTSC----EEEEECSSTTCCEEEEEECTTSSEEEEETTT-------------------------------
T ss_pred             cCCCeEEEECCCCC----EEEccCCCCCCCceeEEECCCCCEEEEecCC-------------------------------
Confidence            88899999998642    22221 1123478999999999999998765                               


Q ss_pred             CCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                           +.|.+++++|+... +..+..  ...+..++.+ +|+||+++..++.|.+++.
T Consensus       167 -----~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          167 -----NSIGRITNTGKLEE-YPLPTN--AAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             -----TEEEEECTTCCEEE-EECSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             -----CeEEEECCCCcEEE-eeCCCC--CCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence                 57999999888765 444332  2456666655 7899999999999998864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=3.6e-13  Score=109.05  Aligned_cols=153  Identities=16%  Similarity=0.185  Sum_probs=115.0

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEE
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ....|++++++++|++|+++..                 .+.|++++++ ++.....  .....|++|+++++|+ ||++
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~  157 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITDD-GKIREYELPNKGSYPSFITLGSDNA-LWFT  157 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEE
T ss_pred             cCCCceeeEECCCCCEEEEecC-----------------CceEEEECCC-CCEEEecCCCCCCCCceEEEcCCCC-EEEE
Confidence            3557899999999999999743                 4679999984 6655443  2456789999999996 9999


Q ss_pred             eCCCCeEEEEEccCCCcccceEe-eccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIF-IENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      +...+.|+++++++    ....+ .......|.++++|++|++|+++...                              
T Consensus       158 ~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------------------------------  203 (299)
T 2z2n_A          158 ENQNNAIGRITESG----DITEFKIPTPASGPVGITKGNDDALWFVEIIG------------------------------  203 (299)
T ss_dssp             ETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTT------------------------------
T ss_pred             eCCCCEEEEEcCCC----cEEEeeCCCCCCcceeEEECCCCCEEEEccCC------------------------------
Confidence            98889999999843    22222 11122468999999999999998765                              


Q ss_pred             cCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                            +.|.+++++|+... +..+..  ...+..++.+ +|+||+++..++.|.+++.
T Consensus       204 ------~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          204 ------NKIGRITTSGEITE-FKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             ------TEEEEECTTCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             ------ceEEEECCCCcEEE-EECCCC--CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence                  57999999887644 444422  2456666655 6899999999999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=3.2e-13  Score=109.32  Aligned_cols=153  Identities=15%  Similarity=0.142  Sum_probs=115.7

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEE
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv~   86 (224)
                      +...|++++++++|++|+++..                 .+.|++++++ ++.....  .....|.+|+++++|+ ||++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~-----------------~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~   73 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHK-----------------ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFT   73 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEE
T ss_pred             cCCCccceEECCCCCEEEEecC-----------------CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEe
Confidence            3578999999999999999742                 4689999998 7666543  2456789999999997 9999


Q ss_pred             eCCCCeEEEEEccCCCcccceEeec-cCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIE-NLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      +...+.|+++++++.    .+.+.. .....|.+++++++|++|+++...                              
T Consensus        74 ~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------------------------------  119 (299)
T 2z2n_A           74 ENAANKIGRITKKGI----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNG------------------------------  119 (299)
T ss_dssp             ETTTTEEEEECTTSC----EEEEECSSTTCCEEEEEECTTSCEEEEETTT------------------------------
T ss_pred             CCCCCeEEEECCCCc----EEEEeCCCcCCCceeeEECCCCCEEEEecCC------------------------------
Confidence            988899999998642    222221 122478999999999999998765                              


Q ss_pred             cCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                            +.|.+++++|+..... .+..  ...+..++.+ +|+||+++...+.|.+++.
T Consensus       120 ------~~i~~~d~~g~~~~~~-~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A          120 ------NRIGRITDDGKIREYE-LPNK--GSYPSFITLGSDNALWFTENQNNAIGRITE  169 (299)
T ss_dssp             ------TEEEEECTTCCEEEEE-CSST--TCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             ------ceEEEECCCCCEEEec-CCCC--CCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence                  5799999988775433 3322  2346666655 6899999998899988864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.57  E-value=7.2e-14  Score=118.29  Aligned_cols=162  Identities=17%  Similarity=0.210  Sum_probs=111.4

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe------cCccccceeEEecC---
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL------EGLYFANGVALSKH---   79 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~------~~~~~pngia~~~d---   79 (224)
                      .+..|.+|++++||+|||++.                  .|+|++++.+ ++ +.+.      .+...|+||+++||   
T Consensus        27 ~l~~P~~ia~~pdG~l~V~e~------------------~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~   86 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGRYLVTER------------------PGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPK   86 (354)
T ss_dssp             SCSCEEEEEEEETTEEEEEET------------------TTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTT
T ss_pred             CCCCCeEEEEcCCCeEEEEeC------------------CCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCc
Confidence            488999999999999999973                  3889999865 55 4442      34578999999998   


Q ss_pred             CCEEEEEeCC---C----CeEEEEEccCC--CcccceEeeccCC----CCCCceEECCCCCEEEEEecCCchhhhhhccC
Q 046107           80 GDFVVVCESW---K----FRCIKHWLKLG--DKRDREIFIENLP----GGPDNINLAPDGSFWISLIKMNSSAVETVHSS  146 (224)
Q Consensus        80 g~~Lyv~~~~---~----~~I~~~~~~~~--~~~~~~~~~~~~~----~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~  146 (224)
                      ++.|||+++.   .    ++|++++.++.  .+...+++++..+    ..+.+|++++||+||++.....+...   .. 
T Consensus        87 ~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~---~~-  162 (354)
T 3a9g_A           87 KSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRL---AQ-  162 (354)
T ss_dssp             SCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGG---GT-
T ss_pred             CCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCcc---cc-
Confidence            5679999863   3    78999998753  3333444443222    25889999999999999876532100   00 


Q ss_pred             hhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcE--------EEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCC
Q 046107          147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSI--------IREFNDPNAKNISFVTSALEF--QGNLYLASINSN  216 (224)
Q Consensus       147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~--------~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~  216 (224)
                                         ......++|+|++++|++        .+.+..  |  +.++..++.+  +|+||+++...+
T Consensus       163 -------------------d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~--G--~rnp~Gla~d~~~g~l~v~d~g~~  219 (354)
T 3a9g_A          163 -------------------DLSSLAGKILRVDEEGRPPADNPFPNSPIWSY--G--HRNPQGIDWHRASGVMVATEHGPV  219 (354)
T ss_dssp             -------------------CTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE--C--CSCCCEEEECTTTCCEEEEECCSS
T ss_pred             -------------------CCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE--c--cCCcceEEEeCCCCCEEEEecCCC
Confidence                               001122799999999973        233322  2  2345556655  589999998876


Q ss_pred             e
Q 046107          217 F  217 (224)
Q Consensus       217 ~  217 (224)
                      .
T Consensus       220 ~  220 (354)
T 3a9g_A          220 G  220 (354)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.54  E-value=2.4e-12  Score=104.54  Aligned_cols=163  Identities=13%  Similarity=0.140  Sum_probs=116.1

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--CccccceeEEecC
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--GLYFANGVALSKH   79 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--~~~~pngia~~~d   79 (224)
                      +.++...+-.+|+++++++||.||++...               ...+.|.++|+.++++.....  ...++.|++++  
T Consensus        12 v~~~p~~~~~f~~Gl~~~~dg~Lyvstg~---------------~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--   74 (266)
T 2iwa_A           12 LNEFPHDPYAFTQGLVYAENDTLFESTGL---------------YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--   74 (266)
T ss_dssp             EEEEECCTTCCEEEEEECSTTEEEEEECS---------------TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--
T ss_pred             EEEEECCCCCCcccEEEeCCCeEEEECCC---------------CCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--
Confidence            46677777778999999998999999732               135789999998888765433  34455677776  


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC-CEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           80 GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG-SFWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        80 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG-~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                      +++||+++...+.|.+||++..+  ....+.  .. .|.|..+.+|| .+|+++ +.                       
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~~--v~~~i~--~g-~~~g~glt~Dg~~l~vs~-gs-----------------------  125 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTLS--NIKNFT--HQ-MKDGWGLATDGKILYGSD-GT-----------------------  125 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTTE--EEEEEE--CC-SSSCCEEEECSSSEEEEC-SS-----------------------
T ss_pred             CCEEEEEEecCCEEEEEECCCCc--EEEEEE--CC-CCCeEEEEECCCEEEEEC-CC-----------------------
Confidence            56799999999999999986421  112221  12 34555555555 699987 34                       


Q ss_pred             hHHhhhhcCCCceEEEEEECCC-CcEEEEEeCC-CCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          159 LINQLMSTGKGAAAKVVKVSAN-GSIIREFNDP-NAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~-~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                   +.|..+|++ .+.+..+.-. .+..+..+..+...+|+||++.+.++.|.+|+.
T Consensus       126 -------------~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          126 -------------SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             -------------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEET
T ss_pred             -------------CeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEEC
Confidence                         589999987 4777776542 233344455666568899999999999999986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=1e-12  Score=107.31  Aligned_cols=169  Identities=16%  Similarity=0.202  Sum_probs=114.8

Q ss_pred             ccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe
Q 046107            9 LIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      .+..+++++++++|+ +|+++..                 .+.|++++++++ .+.+......|++|++++||+ ||+++
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~-----------------~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~-l~v~~   86 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVR-----------------QNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGH-LIACS   86 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGG-----------------GTEEEEEETTSC-EEEEESSCSSEEEEEECTTCC-EEEEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCC-----------------CCEEEEEECCCC-eEEEECCCCCcceeeECCCCc-EEEEe
Confidence            477899999999997 8998743                 578999999866 666666677899999999997 99999


Q ss_pred             CCCCeEEEEEccCCCcccceEeecc----CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           88 SWKFRCIKHWLKLGDKRDREIFIEN----LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~~~~~~~~~~----~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ...++|.+++++.+.   .+.+...    ....|.++++|++|++|+++....+ ...... .                 
T Consensus        87 ~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~-~~~~~~-~-----------------  144 (296)
T 3e5z_A           87 HGLRRLERQREPGGE---WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGI-DKPEEG-Y-----------------  144 (296)
T ss_dssp             TTTTEEEEECSTTCC---EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHH-HCGGGS-S-----------------
T ss_pred             cCCCeEEEEcCCCCc---EEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccc-cccccc-c-----------------
Confidence            888999999985322   2233221    1236899999999999998753100 000000 0                 


Q ss_pred             hhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      ........+.|++++++|+..... ..    ...+..++.+ ++++++++...++|.++++
T Consensus       145 ~~~~~~~~~~l~~~~~~g~~~~~~-~~----~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~  200 (296)
T 3e5z_A          145 GGEMELPGRWVFRLAPDGTLSAPI-RD----RVKPNGLAFLPSGNLLVSDTGDNATHRYCL  200 (296)
T ss_dssp             CCCCCSSSCEEEEECTTSCEEEEE-CC----CSSEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred             cccccCCCcEEEEECCCCCEEEee-cC----CCCCccEEECCCCCEEEEeCCCCeEEEEEE
Confidence            000011116899999998765443 21    2345555554 4555588888899998875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.53  E-value=1.9e-13  Score=113.38  Aligned_cols=170  Identities=9%  Similarity=0.019  Sum_probs=110.2

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--------------------Cc
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--------------------GL   68 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--------------------~~   68 (224)
                      .+..|++++++++|++|+++.                 ..+.|+++++++++++.+..                    ..
T Consensus        17 ~~~~p~~i~~d~~g~~l~v~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   79 (322)
T 2fp8_A           17 PSYAPNSFTFDSTNKGFYTSV-----------------QDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLC   79 (322)
T ss_dssp             SSSCCCCEECCTTCSSEEEEC-----------------TTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHH
T ss_pred             ccCCceEEEEcCCCCEEEEEc-----------------CCCeEEEECCCCCceEEEecccccccccccccccchhccccC
Confidence            478999999999998555553                 25789999988666665431                    12


Q ss_pred             cccceeEEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccC----CCCCCceEECC-CCCEEEEEecCCchhhhh
Q 046107           69 YFANGVALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENL----PGGPDNINLAP-DGSFWISLIKMNSSAVET  142 (224)
Q Consensus        69 ~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~d~-dG~l~va~~~~~~~~~~~  142 (224)
                      ..|+||++++ +| .|||++.. +.|++++++++   ..+.+....    ...|+++++|+ +|++|+++...+....  
T Consensus        80 ~~p~gi~~~~~~g-~l~v~d~~-~~i~~~d~~~g---~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~--  152 (322)
T 2fp8_A           80 GRTYDISYNLQNN-QLYIVDCY-YHLSVVGSEGG---HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDR--  152 (322)
T ss_dssp             CCEEEEEEETTTT-EEEEEETT-TEEEEECTTCE---ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTT--
T ss_pred             CCCceEEEcCCCC-cEEEEECC-CCEEEEeCCCC---EEEEecccCCCCcccccceEEEecCCCEEEEECCccccccc--
Confidence            4689999998 65 59999976 45999988642   223333211    13689999999 9999999876421100  


Q ss_pred             hccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEE
Q 046107          143 VHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGK  220 (224)
Q Consensus       143 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~  220 (224)
                          .....+..           ...  .+.|+++++++.....+..  +  +..+..++.+  ++.||+++...++|.+
T Consensus       153 ----~~~~~~~~-----------~~~--~g~v~~~d~~~~~~~~~~~--~--~~~p~gia~~~dg~~lyv~d~~~~~I~~  211 (322)
T 2fp8_A          153 ----GVQQIMDT-----------SDK--TGRLIKYDPSTKETTLLLK--E--LHVPGGAEVSADSSFVLVAEFLSHQIVK  211 (322)
T ss_dssp             ----CHHHHHHH-----------TCC--CEEEEEEETTTTEEEEEEE--E--ESCCCEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             ----ccceehcc-----------cCC--CceEEEEeCCCCEEEEecc--C--CccCcceEECCCCCEEEEEeCCCCeEEE
Confidence                00011111           011  2789999997443333321  1  2234455544  3469999999999999


Q ss_pred             eeC
Q 046107          221 LPL  223 (224)
Q Consensus       221 ~~~  223 (224)
                      +++
T Consensus       212 ~~~  214 (322)
T 2fp8_A          212 YWL  214 (322)
T ss_dssp             EES
T ss_pred             EEC
Confidence            975

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.52  E-value=5.7e-13  Score=112.19  Aligned_cols=164  Identities=12%  Similarity=0.158  Sum_probs=113.3

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-------ecCccccceeEEecC--
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-------LEGLYFANGVALSKH--   79 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-------~~~~~~pngia~~~d--   79 (224)
                      .+..|.+|++.+||++||++.                 ..|+|+++++++++.+.+       ..+...+.||+++||  
T Consensus        30 gL~~P~~ia~~pdG~llVter-----------------~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~   92 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSR-----------------DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYA   92 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEET-----------------TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHH
T ss_pred             CCCCceEEEEcCCCcEEEEEe-----------------cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccc
Confidence            388999999999999999973                 268999999865665443       245678899999995  


Q ss_pred             -CCEEEEEeC--CCCeEEEEEccC-----CCcccceEeeccCC----CCCCceEECCCCCEEEEEecCCchhhhhhccCh
Q 046107           80 -GDFVVVCES--WKFRCIKHWLKL-----GDKRDREIFIENLP----GGPDNINLAPDGSFWISLIKMNSSAVETVHSSK  147 (224)
Q Consensus        80 -g~~Lyv~~~--~~~~I~~~~~~~-----~~~~~~~~~~~~~~----~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p  147 (224)
                       ++.|||+.+  ..++|.|+..++     ..+.+.+++++..+    .....|++++||.||++.+...+...   ..  
T Consensus        93 ~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~---~q--  167 (347)
T 3das_A           93 SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGL---SQ--  167 (347)
T ss_dssp             HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGG---TT--
T ss_pred             cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCcc---cc--
Confidence             457999753  567999999875     23444555554332    24677999999999999877643210   00  


Q ss_pred             hHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcE--------EEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCC
Q 046107          148 NRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSI--------IREFNDPNAKNISFVTSALEF-QGNLYLASINSN  216 (224)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~--------~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~  216 (224)
                                        ......++|+|++++|++        .+++..  |  +.++..++.+ +|+||+++...+
T Consensus       168 ------------------d~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~--G--~RNp~Gla~dp~G~L~~~d~g~~  223 (347)
T 3das_A          168 ------------------DRKSLGGKILRMTPDGEPAPGNPFPGSPVYSY--G--HRNVQGLAWDDKQRLFASEFGQD  223 (347)
T ss_dssp             ------------------CTTCSTTCEEEECTTSSBCTTCSSTTCCEEEB--C--CSBCCEEEECTTCCEEEEECCSS
T ss_pred             ------------------CCCCCCCEEEEEeCCCCccCCCCCCCCeEEee--C--CCCcceEEECCCCCEEEEecCCC
Confidence                              001122899999999973        233432  3  2345556655 699999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.51  E-value=2.8e-12  Score=106.90  Aligned_cols=159  Identities=13%  Similarity=0.109  Sum_probs=113.4

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcc------ccceeEEecCCCEE
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY------FANGVALSKHGDFV   83 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~------~pngia~~~dg~~L   83 (224)
                      ...|++++++++|++|+++..                 .+.|+++|++++++........      .|++|++  ++++|
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~-----------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~l  143 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIW-----------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYV  143 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBS-----------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEE
T ss_pred             CCCCcEEEEeCCCeEEEEECC-----------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEE
Confidence            578999999889999999832                 4789999998787665444444      8999999  45579


Q ss_pred             EEEeC-CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           84 VVCES-WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        84 yv~~~-~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      ||++. ..+.|.+++++..+.  ...+  .....|.+++++++|++|++........       |               
T Consensus       144 yv~~~~~~~~v~viD~~t~~~--~~~i--~~g~~p~~i~~~~dG~l~v~~~~~~~~~-------~---------------  197 (328)
T 3dsm_A          144 YVNCWSYQNRILKIDTETDKV--VDEL--TIGIQPTSLVMDKYNKMWTITDGGYEGS-------P---------------  197 (328)
T ss_dssp             EEEECTTCCEEEEEETTTTEE--EEEE--ECSSCBCCCEECTTSEEEEEBCCBCTTC-------S---------------
T ss_pred             EEEcCCCCCEEEEEECCCCeE--EEEE--EcCCCccceEEcCCCCEEEEECCCccCC-------c---------------
Confidence            99997 488999999875321  1112  1234799999999999999987541000       0               


Q ss_pred             hhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          163 LMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                          .....+.|.++|++ +++...+..+.|.   .+..++.+  ++.||+++.   .|.++++
T Consensus       198 ----~~~~~~~v~~id~~t~~v~~~~~~~~g~---~p~~la~~~d~~~lyv~~~---~v~~~d~  251 (328)
T 3dsm_A          198 ----YGYEAPSLYRIDAETFTVEKQFKFKLGD---WPSEVQLNGTRDTLYWINN---DIWRMPV  251 (328)
T ss_dssp             ----SCBCCCEEEEEETTTTEEEEEEECCTTC---CCEEEEECTTSCEEEEESS---SEEEEET
T ss_pred             ----cccCCceEEEEECCCCeEEEEEecCCCC---CceeEEEecCCCEEEEEcc---EEEEEEC
Confidence                00001689999986 7777777766553   45566655  788999875   7888765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=1.6e-12  Score=106.75  Aligned_cols=168  Identities=13%  Similarity=0.091  Sum_probs=118.2

Q ss_pred             ceeeeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCC
Q 046107            2 IKIHLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHG   80 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg   80 (224)
                      ++.+-...+.++++++.++ ++.+|++|..                 .+.|+++++++++.+.+ .....|+++++++||
T Consensus         4 ~~~~~~~~~~~~Egp~w~~~~~~l~~~d~~-----------------~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG   65 (297)
T 3g4e_A            4 IECVLPENCRCGESPVWEEVSNSLLFVDIP-----------------AKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSG   65 (297)
T ss_dssp             EEEEECCCCSBEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTS
T ss_pred             EEEEeccCCccccCCeEECCCCEEEEEECC-----------------CCEEEEEECCCCcEEEE-eCCCceEEEEECCCC
Confidence            3455667788999999998 5789999853                 57899999987766543 334678999999999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCcccceEeeccC---C-CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhc
Q 046107           81 DFVVVCESWKFRCIKHWLKLGDKRDREIFIENL---P-GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEH  156 (224)
Q Consensus        81 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~---~-~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~  156 (224)
                      + ||++.  .+.|++++++++   ..+.+....   + ..|+++++|++|++|+++........                
T Consensus        66 ~-l~v~~--~~~l~~~d~~~g---~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~----------------  123 (297)
T 3g4e_A           66 G-YVATI--GTKFCALNWKEQ---SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPA----------------  123 (297)
T ss_dssp             S-EEEEE--TTEEEEEETTTT---EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTT----------------
T ss_pred             C-EEEEE--CCeEEEEECCCC---cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccc----------------
Confidence            8 89986  578999998753   233333211   1 25788999999999999865421000                


Q ss_pred             hhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          157 PELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                               ......+.|++++++|+.......     +..+..++.+  +..||+++...++|.++++
T Consensus       124 ---------~~~~~~~~l~~~d~~g~~~~~~~~-----~~~pngi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A          124 ---------VLERHQGALYSLFPDHHVKKYFDQ-----VDISNGLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             ---------BCCTTCEEEEEECTTSCEEEEEEE-----ESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             ---------cccCCCcEEEEEECCCCEEEEeec-----cccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence                     001122789999999987654422     2234555544  5579999999999999874

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.50  E-value=3.7e-13  Score=113.85  Aligned_cols=162  Identities=15%  Similarity=0.120  Sum_probs=110.4

Q ss_pred             ccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-E-------ecCccccceeEEecC
Q 046107            9 LIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-V-------LEGLYFANGVALSKH   79 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~-------~~~~~~pngia~~~d   79 (224)
                      .+..|.+|+++++|+ +||++.                  .|+|++++++ ++... +       ..+...++||+++||
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~e~------------------~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLITLR------------------GGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEEET------------------TTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CCCCcEEEEEcCCCCEEEEEeC------------------CceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence            488999999999999 999973                  3789999976 44331 1       234457899999996


Q ss_pred             ---CCEEEEEeCC-------CCeEEEEEccCC--CcccceEeeccCC------CCCCceEECCCCCEEEEEecCCchhhh
Q 046107           80 ---GDFVVVCESW-------KFRCIKHWLKLG--DKRDREIFIENLP------GGPDNINLAPDGSFWISLIKMNSSAVE  141 (224)
Q Consensus        80 ---g~~Lyv~~~~-------~~~I~~~~~~~~--~~~~~~~~~~~~~------~~p~~i~~d~dG~l~va~~~~~~~~~~  141 (224)
                         +++|||+++.       ..+|++++.++.  .+...+++++..+      ..+.+|++++||.||++.+...+..  
T Consensus        77 f~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~--  154 (353)
T 2g8s_A           77 FAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP--  154 (353)
T ss_dssp             HHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG--
T ss_pred             CCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC--
Confidence               5679999865       468999988632  3344455544332      2478999999999999987763210  


Q ss_pred             hhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcE-------------EEEEeCCCCCcccceeEEEEE--CC
Q 046107          142 TVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSI-------------IREFNDPNAKNISFVTSALEF--QG  206 (224)
Q Consensus       142 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~-------------~~~~~~~~g~~~~~~t~~~~~--~g  206 (224)
                       ..+                    ......++|+|++++|++             .+.+..  |  +.++..++.+  .|
T Consensus       155 -~~q--------------------~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~--G--~rnp~gl~~d~~~g  209 (353)
T 2g8s_A          155 -TAQ--------------------DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSY--G--IRNPQGMAMNPWSN  209 (353)
T ss_dssp             -GGG--------------------CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEE--C--CSEEEEEEEETTTT
T ss_pred             -ccC--------------------CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEE--c--CcCccceEEECCCC
Confidence             000                    001112799999999973             233322  2  2456666665  69


Q ss_pred             EEEEEeCCCC
Q 046107          207 NLYLASINSN  216 (224)
Q Consensus       207 ~lyv~~~~~~  216 (224)
                      +||+++...+
T Consensus       210 ~l~~~d~g~~  219 (353)
T 2g8s_A          210 ALWLNEHGPR  219 (353)
T ss_dssp             EEEEEEECSB
T ss_pred             CEEEEecCCC
Confidence            9999998753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.50  E-value=6.3e-13  Score=116.07  Aligned_cols=177  Identities=14%  Similarity=0.229  Sum_probs=113.6

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe---c------CccccceeEEecC
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL---E------GLYFANGVALSKH   79 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~---~------~~~~pngia~~~d   79 (224)
                      .+..|.+|+++++|+|||++..                 .++|+++++.+++.+.+.   +      +...+.||+++||
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~-----------------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEcCCCcEEEEEcC-----------------CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            4889999999999999999842                 357999987556655442   1      2345569999996


Q ss_pred             ---CCEEEEEeCC------------CCeEEEEEccCC--CcccceEeeccCC----CCCCceEECCCCCEEEEEecCCch
Q 046107           80 ---GDFVVVCESW------------KFRCIKHWLKLG--DKRDREIFIENLP----GGPDNINLAPDGSFWISLIKMNSS  138 (224)
Q Consensus        80 ---g~~Lyv~~~~------------~~~I~~~~~~~~--~~~~~~~~~~~~~----~~p~~i~~d~dG~l~va~~~~~~~  138 (224)
                         ++.|||+.+.            ..+|+|++.++.  .+...+++++..+    ..+.+|++++||+||++.+...+.
T Consensus        88 f~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~  167 (454)
T 1cru_A           88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRN  167 (454)
T ss_dssp             TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTT
T ss_pred             cCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCC
Confidence               6689999964            468999998632  3334455554322    257999999999999998765321


Q ss_pred             hhhhh------ccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCc-----------EEEEEeCCCCCcccceeEE
Q 046107          139 AVETV------HSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGS-----------IIREFNDPNAKNISFVTSA  201 (224)
Q Consensus       139 ~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~-----------~~~~~~~~~g~~~~~~t~~  201 (224)
                      ....+      ++.|......+.          ......++|+|+++||+           ..+.+..  |  +.++..+
T Consensus       168 ~~~~~~~~~~~~~~p~~~~~~aq----------~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~--G--~RNp~gl  233 (454)
T 1cru_A          168 QLAYLFLPNQAQHTPTQQELNGK----------DYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--G--HRNPQGL  233 (454)
T ss_dssp             SGGGTTSCCCTTCCCCHHHHHTT----------CCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--C--CSEEEEE
T ss_pred             Ccccccccccccccccccccccc----------CCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE--C--CCCcceE
Confidence            00000      000100000000          01112389999999998           3344543  3  3467777


Q ss_pred             EEE-CCEEEEEeCCCC
Q 046107          202 LEF-QGNLYLASINSN  216 (224)
Q Consensus       202 ~~~-~g~lyv~~~~~~  216 (224)
                      +.+ .|+||+++...+
T Consensus       234 a~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          234 AFTPNGKLLQSEQGPN  249 (454)
T ss_dssp             EECTTSCEEEEEECSS
T ss_pred             EECCCCCEEEEecCCC
Confidence            766 689999997654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.49  E-value=7.8e-13  Score=110.31  Aligned_cols=132  Identities=14%  Similarity=0.140  Sum_probs=95.3

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--CccccceeEEecCCCEEEEEeC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--GLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..|++++++++|++|++.... +....      .....+.|+++|++++++.....  ....|++|+++||+++||+++.
T Consensus       172 ~~p~~i~~~~dG~l~v~~~~~-~~~~~------~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          172 IQPTSLVMDKYNKMWTITDGG-YEGSP------YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             SCBCCCEECTTSEEEEEBCCB-CTTCS------SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             CCccceEEcCCCCEEEEECCC-ccCCc------cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence            468999999999999998541 00000      00114789999998777664332  2357999999999999999986


Q ss_pred             CCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEE----ecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISL----IKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                         .|+++++++.++.. ..++......|++|++|+ +|++|+++    ...                            
T Consensus       245 ---~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~----------------------------  292 (328)
T 3dsm_A          245 ---DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ----------------------------  292 (328)
T ss_dssp             ---SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSE----------------------------
T ss_pred             ---EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccC----------------------------
Confidence               89999987543321 122211135799999998 78999998    333                            


Q ss_pred             hhcCCCceEEEEEECCCCcEEEEEeC
Q 046107          164 MSTGKGAAAKVVKVSANGSIIREFND  189 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~~~~~  189 (224)
                              +.|.++|++|+++..+..
T Consensus       293 --------~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          293 --------GIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             --------EEEEEECTTCCEEEEEEE
T ss_pred             --------CEEEEECCCCCEEEEEEe
Confidence                    799999999999988854

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=9.7e-13  Score=115.47  Aligned_cols=167  Identities=8%  Similarity=0.063  Sum_probs=113.4

Q ss_pred             ccccccceEE-------ecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-CeEE-----EEecCcccccee
Q 046107            9 LIRFANDVIE-------ASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-KQVS-----IVLEGLYFANGV   74 (224)
Q Consensus         9 ~~~~~n~v~~-------~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g~~~-----~~~~~~~~pngi   74 (224)
                      .+..|++|++       +++|. +|+++....  ..         .....++.++++. |++.     ........|+|+
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~--~~---------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~gi  252 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG--KG---------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGA  252 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCT--TG---------GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCE
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCC--Cc---------ccCceEEEEecCCCCceeecccceeeccCCCceEE
Confidence            4677999999       99986 999996510  00         0123477776542 2331     122256789999


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEcc-------CCCcc-----c----ceEeecc-CCCCCCceEECCCCC-EEEEEecCC
Q 046107           75 ALSKHGDFVVVCESWKFRCIKHWLK-------LGDKR-----D----REIFIEN-LPGGPDNINLAPDGS-FWISLIKMN  136 (224)
Q Consensus        75 a~~~dg~~Lyv~~~~~~~I~~~~~~-------~~~~~-----~----~~~~~~~-~~~~p~~i~~d~dG~-l~va~~~~~  136 (224)
                      +++|++++||+++...++|++|+++       ++...     .    .+.++.. ....|.+|+++++|+ +|+++... 
T Consensus       253 avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~-  331 (496)
T 3kya_A          253 TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN-  331 (496)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT-
T ss_pred             EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC-
Confidence            9999777799999999999999997       43321     0    1122211 224689999999999 89999877 


Q ss_pred             chhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcE--E---EEEeCC-------CC----Cccccee-
Q 046107          137 SSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSI--I---REFNDP-------NA----KNISFVT-  199 (224)
Q Consensus       137 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~--~---~~~~~~-------~g----~~~~~~t-  199 (224)
                                                         .+|.+++.+|..  +   ..+...       +|    ..+..+. 
T Consensus       332 -----------------------------------h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~  376 (496)
T 3kya_A          332 -----------------------------------HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ  376 (496)
T ss_dssp             -----------------------------------TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred             -----------------------------------CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence                                               588998877632  1   223221       11    2456677 


Q ss_pred             EEEE--------ECCEEEEEeCCCCeEEEee
Q 046107          200 SALE--------FQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       200 ~~~~--------~~g~lyv~~~~~~~i~~~~  222 (224)
                      .++.        .+++|||++..+++|.+++
T Consensus       377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~  407 (496)
T 3kya_A          377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT  407 (496)
T ss_dssp             EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred             EEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence            5555        3589999999999999986

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.48  E-value=8.9e-14  Score=127.47  Aligned_cols=156  Identities=16%  Similarity=0.111  Sum_probs=114.4

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC----CeEEEE-ecCccccceeEEecCCCEE
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS----KQVSIV-LEGLYFANGVALSKHGDFV   83 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~----g~~~~~-~~~~~~pngia~~~dg~~L   83 (224)
                      +..|.+|++++ ++.||++|..                 .++|+++++++    ...+.+ ..++..|.|||+++.++.|
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~-----------------~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~L  467 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI  467 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTT-----------------TTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBC
T ss_pred             CcceEEEccccccCeEEEEecC-----------------CCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcE
Confidence            56788999997 5789999854                 46788888764    222222 3467789999999766679


Q ss_pred             EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           84 VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      ||++...++|.++++++..   .++++......|.+|++|+ +|.||+++....                          
T Consensus       468 Y~tD~~~~~I~v~d~dg~~---~~~l~~~~~~~P~giavDp~~g~ly~td~~~~--------------------------  518 (699)
T 1n7d_A          468 YWTDSVLGTVSVADTKGVK---RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTP--------------------------  518 (699)
T ss_dssp             EECCTTTSCEEEEBSSSCC---EEEECCCSSCCCCCEECCSSSSCCEECCCSSS--------------------------
T ss_pred             EEEeccCCeEEEEecCCCc---eEEEEeCCCCCcceEEEccCCCcEEEcccCCC--------------------------
Confidence            9999999999999998632   3344332235799999998 478999986541                          


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                               ++|.+++++|+...++....   +..+..++++  +++||+++...++|.++++
T Consensus       519 ---------~~I~~~~~dG~~~~~l~~~~---l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          519 ---------AKIKKGGLNGVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             ---------CCEEBCCSSSCCCCEESCSS---CSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             ---------CeEEEEeCCCCCeeEEEeCC---CCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence                     57899999998766653321   3456666654  6899999999999999976

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.48  E-value=2.1e-12  Score=106.31  Aligned_cols=167  Identities=14%  Similarity=0.175  Sum_probs=113.4

Q ss_pred             ccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe
Q 046107            9 LIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      .+..+++++.+++|+ ||+++..                 .+.|++++++ ++.+.+......|+++++++||+ ||+++
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~-l~v~~  103 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLV-----------------GRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQR-LVHCE  103 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETT-----------------TTEEEEEETT-SCEEEEEESCSCEEEEEECTTSC-EEEEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECC-----------------CCEEEEEeCC-CCEEEEeCCCCccceeeECCCCC-EEEEE
Confidence            367789999999987 9999843                 5789999995 66776766778899999999997 99999


Q ss_pred             CCCCeEEEEEccCCCcccceEeeccC----CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           88 SWKFRCIKHWLKLGDKRDREIFIENL----PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ...++|.++++++.    .+.+....    ...|++++++++|++|+++...... .++-..                  
T Consensus       104 ~~~~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~-~~~~~~------------------  160 (305)
T 3dr2_A          104 HGRRAITRSDADGQ----AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLR-KPSQGC------------------  160 (305)
T ss_dssp             TTTTEEEEECTTSC----EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGS-CGGGSC------------------
T ss_pred             CCCCEEEEECCCCC----EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcc-cccccc------------------
Confidence            88889999998642    23333211    1368999999999999987532100 000000                  


Q ss_pred             hhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCC-----CeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINS-----NFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~-----~~i~~~~~  223 (224)
                      ........+.|++++++ |++.... .     +..+..++.+  +..||+++...     +.|.++++
T Consensus       161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             CCCCSSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             ccccccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence            00001112789999995 6654433 1     2234555544  45699998874     78988874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.46  E-value=8.1e-12  Score=103.26  Aligned_cols=159  Identities=14%  Similarity=0.166  Sum_probs=111.3

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ...|++++++++|+||+++..                 .+.|+++++++++...+. .....|++|++++||+ ||++..
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~  105 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVF-----------------EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYL  105 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEEC
T ss_pred             CccccCcEECCCCCEEEEECC-----------------CCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc-EEEEeC
Confidence            456889999999999998743                 578999999877776554 3456789999999997 999987


Q ss_pred             CC----CeEEEEEccCCCcccceEeecc-CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           89 WK----FRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        89 ~~----~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ..    +.|+++++++....  ..+... ....|.++++|++|++|+++.....                          
T Consensus       106 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~--------------------------  157 (333)
T 2dg1_A          106 GDFKSTGGIFAATENGDNLQ--DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS--------------------------  157 (333)
T ss_dssp             TTSSSCCEEEEECTTSCSCE--EEECSSSSCCCEEEEEECTTSCEEEEECCCBT--------------------------
T ss_pred             CCCCCCceEEEEeCCCCEEE--EEEccCccCCcccceEECCCCCEEEEeccccc--------------------------
Confidence            66    79999998764321  122111 1236889999999999999865310                          


Q ss_pred             hhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccceeEEEEE-C-CEEEEEeCCCCeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISFVTSALEF-Q-GNLYLASINSNFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~~t~~~~~-~-g~lyv~~~~~~~i~~~~~  223 (224)
                          ....+.|+++++++ +.......     ...+..++.+ + ..||+++...+.|.++++
T Consensus       158 ----~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          158 ----TNPLGGVYYVSPDFRTVTPIIQN-----ISVANGIALSTDEKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             ----TBCCEEEEEECTTSCCEEEEEEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ----cCCCceEEEEeCCCCEEEEeecC-----CCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence                00117899999986 44333221     1234455544 3 469999988888988875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.46  E-value=3.8e-11  Score=96.00  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=119.5

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC--ccccceeEEecC
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG--LYFANGVALSKH   79 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~--~~~pngia~~~d   79 (224)
                      |..|.+.+-.+..++.+++ +.||++...               .+...|.++|+++|++.....-  ..+..||++.  
T Consensus        12 ~~~~phd~~~ftqGL~~~~-~~LyestG~---------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--   73 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLR-GHLYESTGE---------------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--   73 (243)
T ss_dssp             EEEEECCTTCCEEEEEEET-TEEEEEECC---------------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--
T ss_pred             EEEcCCCCccccccEEEEC-CEEEEECCC---------------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--
Confidence            5678889999999999985 899999732               2345899999998887765433  3344566665  


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107           80 GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL  159 (224)
Q Consensus        80 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (224)
                      +++||+.....+.+++||++..  .....+.  .++.+.|++.| .+.+|+++. .                        
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl--~~~~ti~--~~~~Gwglt~d-g~~L~vSdg-s------------------------  123 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATL--TPRARFR--YPGEGWALTSD-DSHLYMSDG-T------------------------  123 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTT--EEEEEEE--CSSCCCEEEEC-SSCEEEECS-S------------------------
T ss_pred             CCEEEEEEeeCCEEEEEECCcC--cEEEEEe--CCCCceEEeeC-CCEEEEECC-C------------------------
Confidence            5679999999999999998652  1222221  23466777765 367999985 4                        


Q ss_pred             HHhhhhcCCCceEEEEEECCC-CcEEEEEeCC-CCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          160 INQLMSTGKGAAAKVVKVSAN-GSIIREFNDP-NAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       160 ~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~-~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                  ++|..+||+ .+.++.+.-. .+..+..+..+...+|+||+..+.++.|.+|+.
T Consensus       124 ------------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp  177 (243)
T 3mbr_X          124 ------------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDP  177 (243)
T ss_dssp             ------------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECT
T ss_pred             ------------CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEEC
Confidence                        579999987 6777776542 344455666666779999999999999999985

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.45  E-value=5.2e-12  Score=103.24  Aligned_cols=173  Identities=14%  Similarity=0.195  Sum_probs=111.2

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-----CccccceeEEecC-CCE
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-----GLYFANGVALSKH-GDF   82 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-----~~~~pngia~~~d-g~~   82 (224)
                      .+..|++++++++|++|++.....          ......+.|+++++++++.+.+..     ....|.++++++| | .
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~----------~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-~   84 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVE----------VNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-Q   84 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCE----------ETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-E
T ss_pred             cCCCccCceECCCCCEEEEEeccc----------cCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-c
Confidence            478899999999999999921000          000125689999987677765543     2356899999999 6 5


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEe-ecc---C-CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIF-IEN---L-PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~-~~~---~-~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                      |||++.. +.|+++++++ .   ...+ ...   . ...|.++++|++|++|+++........++.              
T Consensus        85 l~v~~~~-~~l~~~d~~g-~---~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~--------------  145 (314)
T 1pjx_A           85 LFVADMR-LGLLVVQTDG-T---FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--------------  145 (314)
T ss_dssp             EEEEETT-TEEEEEETTS-C---EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--------------
T ss_pred             EEEEECC-CCEEEEeCCC-C---EEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc--------------
Confidence            9999864 4899999873 2   2222 211   1 135899999999999999875410000000              


Q ss_pred             hhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-----CC-EEEEEeCCCCeEEEeeC
Q 046107          158 ELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-----QG-NLYLASINSNFIGKLPL  223 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-----~g-~lyv~~~~~~~i~~~~~  223 (224)
                             .......+.|++++++|+.......     ...+..++.+     ++ .||+++...++|.++++
T Consensus       146 -------~~~~~~~~~l~~~~~~g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~  205 (314)
T 1pjx_A          146 -------RSMQEKFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI  205 (314)
T ss_dssp             -------BTTSSSCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred             -------ccccCCCCeEEEECCCCCEEEeccC-----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEEC
Confidence                   0001112689999999877554321     1223444433     34 79999998999998864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.44  E-value=2.1e-11  Score=101.46  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=111.3

Q ss_pred             cccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecC-------ccccceeEE--
Q 046107            8 HLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEG-------LYFANGVAL--   76 (224)
Q Consensus         8 ~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~-------~~~pngia~--   76 (224)
                      .+--+|++++.++ +|.+||++..                 .|.|.+++++++..+.+ .++       ...+.||.+  
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~-----------------~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~   72 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLY-----------------KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLT   72 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETT-----------------TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESS
T ss_pred             CcccCCcCccCcCCCCEEEEEecc-----------------CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEec
Confidence            4567899999986 7899999965                 68999999985554444 222       225689999  


Q ss_pred             -ecCCCEEEE-EeC------------CCCeEEEEEccCCCcccceEeec------c-------CCCCCCceEECCCCCEE
Q 046107           77 -SKHGDFVVV-CES------------WKFRCIKHWLKLGDKRDREIFIE------N-------LPGGPDNINLAPDGSFW  129 (224)
Q Consensus        77 -~~dg~~Lyv-~~~------------~~~~I~~~~~~~~~~~~~~~~~~------~-------~~~~p~~i~~d~dG~l~  129 (224)
                       +|++ +||| ++.            ..+.|.+|++.+...+.....++      .       ..+.+++|++|++|+.|
T Consensus        73 ~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY  151 (334)
T 2p9w_A           73 HDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY  151 (334)
T ss_dssp             SSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE
T ss_pred             cCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEE
Confidence             7886 5877 442            25789999987211112111111      1       12358999999999999


Q ss_pred             EEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe--CCCCCcccceeEEEEE--C
Q 046107          130 ISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN--DPNAKNISFVTSALEF--Q  205 (224)
Q Consensus       130 va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~--~~~g~~~~~~t~~~~~--~  205 (224)
                      |++....                                   +.|+|++|+|+.+..+.  .|........+.++.+  +
T Consensus       152 Vt~s~~~-----------------------------------~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg  196 (334)
T 2p9w_A          152 VAFALGM-----------------------------------PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHS  196 (334)
T ss_dssp             EEEEESS-----------------------------------CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTT
T ss_pred             EeCCCCC-----------------------------------CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCC
Confidence            9876551                                   47999999998655442  2333334567777765  5


Q ss_pred             CEEEEEeCCCCeEEEeeC
Q 046107          206 GNLYLASINSNFIGKLPL  223 (224)
Q Consensus       206 g~lyv~~~~~~~i~~~~~  223 (224)
                      ..|++... .++|.++++
T Consensus       197 ~~Liv~~~-~g~L~~fD~  213 (334)
T 2p9w_A          197 NKLIAFGG-PRALTAFDV  213 (334)
T ss_dssp             TEEEEESS-SSSEEEEEC
T ss_pred             CEEEEEcC-CCeEEEEcC
Confidence            56777777 999999986

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.42  E-value=5.1e-11  Score=96.11  Aligned_cols=162  Identities=12%  Similarity=0.059  Sum_probs=117.1

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC--ccccceeEEecC
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG--LYFANGVALSKH   79 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~--~~~pngia~~~d   79 (224)
                      |++|.+.+-.+..++.++ +|.||++...               .+...|.++|++++++.....-  ..+..||++.  
T Consensus        34 v~~~phd~~~ftqGL~~~-~~~LyestG~---------------~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--   95 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NGYFYESTGL---------------NGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--   95 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TTEEEEEEEE---------------TTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--
T ss_pred             EEEecCCCCcccceEEEE-CCEEEEECCC---------------CCCceEEEEECCCCcEEEEEecCCccceeEEEEe--
Confidence            567888888888999998 7899999632               1235799999998887654433  3334566664  


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107           80 GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL  159 (224)
Q Consensus        80 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (224)
                      +++||++....+.+++||++..+  ....+.  .++.+.+++.| .+.+|+++. .                        
T Consensus        96 g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~--~~~eG~glt~d-g~~L~~SdG-s------------------------  145 (262)
T 3nol_A           96 KDKIVGLTWKNGLGFVWNIRNLR--QVRSFN--YDGEGWGLTHN-DQYLIMSDG-T------------------------  145 (262)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCC--EEEEEE--CSSCCCCEEEC-SSCEEECCS-S------------------------
T ss_pred             CCEEEEEEeeCCEEEEEECccCc--EEEEEE--CCCCceEEecC-CCEEEEECC-C------------------------
Confidence            56899999999999999996522  122221  23456677765 357999985 3                        


Q ss_pred             HHhhhhcCCCceEEEEEECCC-CcEEEEEeCC-CCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          160 INQLMSTGKGAAAKVVKVSAN-GSIIREFNDP-NAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       160 ~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~-~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                  ++|..+||+ .+.+..+.-. +|..+..+..+...+|+||++.+..+.|.+|+.
T Consensus       146 ------------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          146 ------------PVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             ------------SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECT
T ss_pred             ------------CeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEEC
Confidence                        579999987 7888877553 344445555555668999999999999999985

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=7.6e-12  Score=104.83  Aligned_cols=163  Identities=16%  Similarity=0.263  Sum_probs=105.8

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-------CccccceeEEecCC
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-------GLYFANGVALSKHG   80 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-------~~~~pngia~~~dg   80 (224)
                      ..+..|++|+++++|+||++|...            .....++|+++|++++++.....       ...++++|++++++
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~------------~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~  131 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGN------------QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH  131 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHH------------HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCC------------CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC
Confidence            357899999999999999998430            00124689999988777433221       12467999999877


Q ss_pred             CEEEEEeC---CCCeEEEEEccCCCccc------------ceEeecc--------------CCCCCCceEECCCCC-EEE
Q 046107           81 DFVVVCES---WKFRCIKHWLKLGDKRD------------REIFIEN--------------LPGGPDNINLAPDGS-FWI  130 (224)
Q Consensus        81 ~~Lyv~~~---~~~~I~~~~~~~~~~~~------------~~~~~~~--------------~~~~p~~i~~d~dG~-l~v  130 (224)
                      +++||++.   ..+.|++++++++....            .....++              ....|+||++++||+ +|+
T Consensus       132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~  211 (343)
T 2qe8_A          132 NFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYL  211 (343)
T ss_dssp             TEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEE
T ss_pred             CEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEE
Confidence            78999998   78899999986422100            0000110              012478999999995 999


Q ss_pred             EEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC----CCcE--------EEEEeCCCCCcccce
Q 046107          131 SLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA----NGSI--------IREFNDPNAKNISFV  198 (224)
Q Consensus       131 a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~G~~--------~~~~~~~~g~~~~~~  198 (224)
                      ++...                                    .++++++.    ++..        +..+.. .+    .+
T Consensus       212 ~~~~~------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~g----~p  250 (343)
T 2qe8_A          212 SPMHS------------------------------------TSMYRIKSADLSNLQLTDAELGSKIERYSE-KP----IC  250 (343)
T ss_dssp             EESSC------------------------------------SEEEEEEHHHHTCTTCCHHHHHTTCEEEEE-CC----SC
T ss_pred             EeCCC------------------------------------CeEEEEEHHHhcCCCCChhhhhcceEeccc-CC----CC
Confidence            88766                                    46666653    1211        111111 11    23


Q ss_pred             eEEEE-ECCEEEEEeCCCCeEEEeeC
Q 046107          199 TSALE-FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       199 t~~~~-~~g~lyv~~~~~~~i~~~~~  223 (224)
                      ..++. .+|+||++...+++|.+++.
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEEC
Confidence            33443 47899999999999998874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.37  E-value=3.4e-11  Score=101.64  Aligned_cols=169  Identities=15%  Similarity=0.163  Sum_probs=107.6

Q ss_pred             cccccceEEecC----CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe---EEEEec-------CccccceeE
Q 046107           10 IRFANDVIEASD----GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ---VSIVLE-------GLYFANGVA   75 (224)
Q Consensus        10 ~~~~n~v~~~~~----G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~---~~~~~~-------~~~~pngia   75 (224)
                      ...|++|+++++    |.||+++....            ....++|++++.++++   .+.+.+       ....+++|+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~  141 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAE------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIA  141 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECT------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCC------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEE
Confidence            568999999997    79999985310            0113678898876442   222222       234678999


Q ss_pred             EecCCCEEEEEeC-------------CCCeEEEEEccCCCc----------ccceEeeccCCCCCCceEECC-CCCEEEE
Q 046107           76 LSKHGDFVVVCES-------------WKFRCIKHWLKLGDK----------RDREIFIENLPGGPDNINLAP-DGSFWIS  131 (224)
Q Consensus        76 ~~~dg~~Lyv~~~-------------~~~~I~~~~~~~~~~----------~~~~~~~~~~~~~p~~i~~d~-dG~l~va  131 (224)
                      ++|||. |||+..             ..++|+|++++|...          ...+++..+ ...|.++++|+ +|+||++
T Consensus       142 ~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~  219 (352)
T 2ism_A          142 FGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSS  219 (352)
T ss_dssp             ECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEE
T ss_pred             ECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEE
Confidence            999995 999973             237999999986210          123444422 23699999999 7999999


Q ss_pred             EecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcE---------------EEEEeCCCCCccc
Q 046107          132 LIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSI---------------IREFNDPNAKNIS  196 (224)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~---------------~~~~~~~~g~~~~  196 (224)
                      +...+..           +.                 .+...|.++.+.+..               ...+..+..   .
T Consensus       220 d~g~~~~-----------~~-----------------~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~---~  268 (352)
T 2ism_A          220 EHGPSGE-----------QG-----------------YGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG---F  268 (352)
T ss_dssp             EECC----------------------------------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC---C
T ss_pred             EcCCCCC-----------CC-----------------CCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC---C
Confidence            9876310           00                 000245666554310               001111111   2


Q ss_pred             ceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          197 FVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       197 ~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      .++.++..+|+||+++..+++|.++++
T Consensus       269 ap~G~~~~~G~l~v~~~~~~~v~~v~~  295 (352)
T 2ism_A          269 PPGNLAFFRGDLYVAGLRGQALLRLVL  295 (352)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEECCEEEEEECCCCEEEEEEE
Confidence            466777789999999999999999875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.35  E-value=3.8e-11  Score=99.89  Aligned_cols=150  Identities=11%  Similarity=0.014  Sum_probs=99.9

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe------cCccccceeEEecCCCE
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL------EGLYFANGVALSKHGDF   82 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~------~~~~~pngia~~~dg~~   82 (224)
                      ....+|||++|++|++|||++.                +-+.|+|+++++..+..+.      ....++|||+++|||+.
T Consensus       135 ~~~~~nDvavD~~GnaYVt~s~----------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~  198 (334)
T 2p9w_A          135 RPFGVVQSAQDRDGNSYVAFAL----------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNK  198 (334)
T ss_dssp             CCEEEEEEEECTTSCEEEEEEE----------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTE
T ss_pred             cccCCceeEECCCCCEEEeCCC----------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCE
Confidence            4456999999999999999853                1177999999844444332      12345789999999999


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEeec--c---CCCCCCce-EECCCCCE-EEEEecCCchhhhhhccChhHHHHHhh
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIFIE--N---LPGGPDNI-NLAPDGSF-WISLIKMNSSAVETVHSSKNRKQLLEE  155 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~---~~~~p~~i-~~d~dG~l-~va~~~~~~~~~~~~~~~p~~~~~~~~  155 (224)
                      |+++++ .++|++|+++..  ....+-..  +   ....|++| +...+|++ +|++...                    
T Consensus       199 Liv~~~-~g~L~~fD~~~p--v~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~--------------------  255 (334)
T 2p9w_A          199 LIAFGG-PRALTAFDVSKP--YAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAP--------------------  255 (334)
T ss_dssp             EEEESS-SSSEEEEECSSS--SCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETT--------------------
T ss_pred             EEEEcC-CCeEEEEcCCCC--cceeecccccCCcccccCcccccccccCCEEEEEEcCCC--------------------
Confidence            999998 999999998731  11012111  1   12368895 66778987 7777655                    


Q ss_pred             chhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeC-CCCCcccceeEEEE----ECCEEEEEeC
Q 046107          156 HPELINQLMSTGKGAAAKVVKVSANG-SIIREFND-PNAKNISFVTSALE----FQGNLYLASI  213 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~-~~g~~~~~~t~~~~----~~g~lyv~~~  213 (224)
                                      +.+...+.|| +-...... |..-....++.++.    .++++|+.+.
T Consensus       256 ----------------~~~~l~S~DgW~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~  303 (334)
T 2p9w_A          256 ----------------YAISFRSWDNWKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSA  303 (334)
T ss_dssp             ----------------EEEEEECSSTTSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEEC
T ss_pred             ----------------CEEEEECCCCcceeEEeeeecCccccCceeEEEEeccccCCeEEEEee
Confidence                            6788888886 22222221 21101245666555    5799999884

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.35  E-value=1.4e-10  Score=93.66  Aligned_cols=160  Identities=12%  Similarity=0.031  Sum_probs=115.4

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCC
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHG   80 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg   80 (224)
                      +++|.+.+-.+..++.++ ++.||++...                 .|.|.++|++++++... .+...+..||++.  +
T Consensus        46 v~~~phd~~~ftqGL~~~-~~~Ly~stG~-----------------~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g  105 (268)
T 3nok_A           46 IREYPHATNAFTQGLVFH-QGHFFESTGH-----------------QGTLRQLSLESAQPVWMERLGNIFAEGLASD--G  105 (268)
T ss_dssp             EEEEECCTTCCEEEEEEE-TTEEEEEETT-----------------TTEEEECCSSCSSCSEEEECTTCCEEEEEEC--S
T ss_pred             EEEEcCCCccccceEEEE-CCEEEEEcCC-----------------CCEEEEEECCCCcEEeEECCCCcceeEEEEe--C
Confidence            567777777888899987 5799999733                 56799999988765433 3333445667765  5


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           81 DFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        81 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      ++||++....+.+++||++..+  ....+.  .++.+.|++.|. +.+|+++. .                         
T Consensus       106 ~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~--~~~eGwGLt~Dg-~~L~vSdG-s-------------------------  154 (268)
T 3nok_A          106 ERLYQLTWTEGLLFTWSGMPPQ--RERTTR--YSGEGWGLCYWN-GKLVRSDG-G-------------------------  154 (268)
T ss_dssp             SCEEEEESSSCEEEEEETTTTE--EEEEEE--CSSCCCCEEEET-TEEEEECS-S-------------------------
T ss_pred             CEEEEEEccCCEEEEEECCcCc--EEEEEe--CCCceeEEecCC-CEEEEECC-C-------------------------
Confidence            5699999999999999986521  122221  234567777663 57999984 4                         


Q ss_pred             HhhhhcCCCceEEEEEECCC-CcEEEEEeCC-CCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSAN-GSIIREFNDP-NAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~-~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                 ++|..+||+ .+.+..+.-. .+..+..+..+...+|+||++.+..+.|.+|+.
T Consensus       155 -----------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          155 -----------TMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             -----------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECT
T ss_pred             -----------CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeC
Confidence                       589999987 6887777542 344455666666678999999999999999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.34  E-value=1.1e-10  Score=96.55  Aligned_cols=150  Identities=15%  Similarity=0.138  Sum_probs=108.7

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCC
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      |++++++++|+ +|+++..                ..+.|+.+|.++++...... ....|++++++|||++||+++. .
T Consensus       143 ~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~  205 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-D  205 (353)
T ss_dssp             EEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-T
T ss_pred             CceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-C
Confidence            78899999985 8888632                25789999998777665555 4556999999999999999986 6


Q ss_pred             CeEEEEEccCCCcccceEeecc---CCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           91 FRCIKHWLKLGDKRDREIFIEN---LPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      +.|+.+++...+.  ...+...   ....+.+++++++|+ +|+++...                               
T Consensus       206 ~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------------------------------  252 (353)
T 3vgz_A          206 GELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-------------------------------  252 (353)
T ss_dssp             SEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS-------------------------------
T ss_pred             CeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC-------------------------------
Confidence            8999999864321  1111111   123567899999997 88887655                               


Q ss_pred             CCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEE--EECCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSAL--EFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~--~~~g~lyv~~~~~~~i~~~~~  223 (224)
                           +.|..+|. .|+.+..+..+..      ..+.  .+++.||+++..++.|.++++
T Consensus       253 -----~~v~~~d~~~~~~~~~~~~~~~------~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          253 -----AEVLVVDTRNGNILAKVAAPES------LAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             -----SEEEEEETTTCCEEEEEECSSC------CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             -----CEEEEEECCCCcEEEEEEcCCC------ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence                 57889997 4788777765432      1233  345679999999999999886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.33  E-value=6.5e-10  Score=91.79  Aligned_cols=155  Identities=7%  Similarity=-0.025  Sum_probs=107.6

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC--cc--------ccceeEEecCC
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG--LY--------FANGVALSKHG   80 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~--~~--------~pngia~~~dg   80 (224)
                      .|.+++++++|+ +|+++..                 .+.|+.+|.++++.......  ..        .|++++++|||
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  152 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTV-----------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT  152 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETT-----------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT
T ss_pred             CcceEEECCCCCEEEEEecC-----------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC
Confidence            478999999986 8888743                 56899999877765433222  11        37899999999


Q ss_pred             CEEEEEe-CCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           81 DFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        81 ~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                      ++||+++ ...+.|+.+++...+   ....+......|.+++++++|+ +|++.. .                       
T Consensus       153 ~~l~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~-----------------------  205 (353)
T 3vgz_A          153 NTVYISGIGKESVIWVVDGGNIK---LKTAIQNTGKMSTGLALDSEGKRLYTTNA-D-----------------------  205 (353)
T ss_dssp             TEEEEEEESSSCEEEEEETTTTE---EEEEECCCCTTCCCCEEETTTTEEEEECT-T-----------------------
T ss_pred             CEEEEEecCCCceEEEEcCCCCc---eEEEecCCCCccceEEECCCCCEEEEEcC-C-----------------------
Confidence            9999999 457889999986422   1111211233589999999998 666544 3                       


Q ss_pred             hHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          159 LINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                   +.|..+|.. |+....+..+.......+..++.+  ++.||+++...+.|.++++
T Consensus       206 -------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  260 (353)
T 3vgz_A          206 -------------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT  260 (353)
T ss_dssp             -------------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred             -------------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence                         467888864 777777765322112345445544  6779999998899999876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.32  E-value=1.1e-10  Score=96.87  Aligned_cols=158  Identities=16%  Similarity=0.145  Sum_probs=101.1

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC-CCeEEEEe----cCccccceeEEecCCCEEEEE
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS-SKQVSIVL----EGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~g~~~~~~----~~~~~pngia~~~dg~~Lyv~   86 (224)
                      .++.+++++||++|+++..                 .+.|+.++.+ ++++....    .....|++++++|||++||++
T Consensus       142 ~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~  204 (347)
T 3hfq_A          142 HIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA  204 (347)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE
Confidence            4678999999999998743                 3456555543 35554332    234478899999999999999


Q ss_pred             eCCCCeEEEEEccC--CCcccceEeeccCC------CCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           87 ESWKFRCIKHWLKL--GDKRDREIFIENLP------GGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        87 ~~~~~~I~~~~~~~--~~~~~~~~~~~~~~------~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                      +...+.|..|+.+.  +.......+. ..+      ..|.++++++||+ +|++....+.                    
T Consensus       205 ~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~--------------------  263 (347)
T 3hfq_A          205 GELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT--------------------  263 (347)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE--------------------
T ss_pred             eCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE--------------------
Confidence            98889998888763  2211111111 111      2477899999998 7788765411                    


Q ss_pred             hhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          158 ELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                    -.|+.++++|+....-..+.+.  ..+..++.+  +..||+++..++.|.++++
T Consensus       264 --------------v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          264 --------------LAVFAVTADGHLTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             --------------EEEEEECGGGCEEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             --------------EEEEEECCCCcEEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence                          3566666667543332222211  124444543  5579999999898888843

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.32  E-value=1e-10  Score=98.85  Aligned_cols=174  Identities=16%  Similarity=0.135  Sum_probs=109.2

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC--------eEEEEecCccccceeEEecC
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK--------QVSIVLEGLYFANGVALSKH   79 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g--------~~~~~~~~~~~pngia~~~d   79 (224)
                      .....+++|++++||.||+++...  +......+  .....|+|+|+++++.        ..+++..++..|+||+++|+
T Consensus       132 ~~~h~~~~l~~~pDG~Lyvt~G~~--~~~~~~~d--~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~  207 (354)
T 3a9g_A          132 AYIHNGGRIRFGPDGMLYITTGDA--ADPRLAQD--LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRA  207 (354)
T ss_dssp             CSSCCCCCEEECTTSCEEEECCCT--TCGGGGTC--TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTT
T ss_pred             CCCcCCceEEECCCCcEEEEECCC--CCCccccC--CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCC
Confidence            345678999999999999997431  11100001  1234689999999842        24667788999999999994


Q ss_pred             CCEEEEEeCCCC---eEEEEEccCCCccc------------ceEeec--cCCCCCCceEE-------CCCCCEEEEEecC
Q 046107           80 GDFVVVCESWKF---RCIKHWLKLGDKRD------------REIFIE--NLPGGPDNINL-------APDGSFWISLIKM  135 (224)
Q Consensus        80 g~~Lyv~~~~~~---~I~~~~~~~~~~~~------------~~~~~~--~~~~~p~~i~~-------d~dG~l~va~~~~  135 (224)
                      ...||+++...+   +|.++.. |...+-            ......  .....|.|+++       +.+|++|+++...
T Consensus       208 ~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~  286 (354)
T 3a9g_A          208 SGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG  286 (354)
T ss_dssp             TCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT
T ss_pred             CCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC
Confidence            334999997764   4666543 221110            011111  11236899999       5689999998776


Q ss_pred             CchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC--CcEEEEEeCCCCCcccceeEEEEE-CCEEEEEe
Q 046107          136 NSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--GSIIREFNDPNAKNISFVTSALEF-QGNLYLAS  212 (224)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~  212 (224)
                                                          ++|.+++.+  |+....-..-.+. ...+..++.. +|.|||++
T Consensus       287 ------------------------------------~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          287 ------------------------------------SMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             ------------------------------------TEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEE
T ss_pred             ------------------------------------CEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEE
Confidence                                                567777765  5553221111121 2346666654 78999999


Q ss_pred             CC-CC---------eEEEeeC
Q 046107          213 IN-SN---------FIGKLPL  223 (224)
Q Consensus       213 ~~-~~---------~i~~~~~  223 (224)
                      .. ..         +|.|+..
T Consensus       330 ~~~~G~g~~~~~~g~i~ri~~  350 (354)
T 3a9g_A          330 SNRDGRGSLRAGDDKILKIVS  350 (354)
T ss_dssp             CTTSSSSCCCTTCSCEEEEEE
T ss_pred             eCCCCCcCCCCCCCEEEEEec
Confidence            74 33         8999863

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.31  E-value=1.8e-10  Score=95.63  Aligned_cols=162  Identities=12%  Similarity=0.036  Sum_probs=107.4

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEE
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL---EGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~---~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ...|..+++++||++|+++..               ...+.|+.++.++++.+.+.   .....|++++++|||++||++
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~---------------~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~  103 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKE---------------DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSA  103 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEE---------------TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEE
T ss_pred             cCCcceEEEccCCeEEEEEec---------------CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEE
Confidence            567889999999999988631               12567888887666655543   256789999999999999999


Q ss_pred             eCCCCeEEEEEccC-CCcccceEeeccCC--------CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           87 ESWKFRCIKHWLKL-GDKRDREIFIENLP--------GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        87 ~~~~~~I~~~~~~~-~~~~~~~~~~~~~~--------~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                      +...+.|..|+++. +.......+.....        ..|..++++++|++|+++...+.                    
T Consensus       104 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~--------------------  163 (347)
T 3hfq_A          104 NYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK--------------------  163 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE--------------------
T ss_pred             eCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE--------------------
Confidence            98889999998852 22211111111000        13567999999998888766510                    


Q ss_pred             hhHHhhhhcCCCceEEEEEECCCCcEEEE--EeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          158 ELINQLMSTGKGAAAKVVKVSANGSIIRE--FNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~--~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                    -.++.++++|++...  +..+.+.   .+..++.+  +..||+++...+.|.++++
T Consensus       164 --------------v~~~~~~~~g~~~~~~~~~~~~g~---~p~~~~~spdg~~l~v~~~~~~~v~v~~~  216 (347)
T 3hfq_A          164 --------------VYVYNVSDAGQLSEQSVLTMEAGF---GPRHLVFSPDGQYAFLAGELSSQIASLKY  216 (347)
T ss_dssp             --------------EEEEEECTTSCEEEEEEEECCTTC---CEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             --------------EEEEEECCCCcEEEeeeEEcCCCC---CCceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence                          345666666765433  3333332   34444443  4459999988888887764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.29  E-value=2.4e-10  Score=92.73  Aligned_cols=155  Identities=12%  Similarity=0.108  Sum_probs=108.7

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      .++.+++++ +++||+++.                 ..+.++.+|+++.++.....-. .|.|+.+++||++||+++ .+
T Consensus        66 ~fgeGi~~~-g~~lyv~t~-----------------~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs  125 (266)
T 2iwa_A           66 YFGEGLTLL-NEKLYQVVW-----------------LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GT  125 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEET-----------------TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SS
T ss_pred             cceEEEEEe-CCEEEEEEe-----------------cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CC
Confidence            345577776 458999973                 3678999999876554333222 577888899999999999 68


Q ss_pred             CeEEEEEccCCCcccceEeecc---CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           91 FRCIKHWLKLGDKRDREIFIEN---LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                      ++|+.+|+++.+. ...+-...   ....|+.+.+. +|.+|++.+..                                
T Consensus       126 ~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~--------------------------------  171 (266)
T 2iwa_A          126 SILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT--------------------------------  171 (266)
T ss_dssp             SEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTS--------------------------------
T ss_pred             CeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CCEEEEecCCC--------------------------------
Confidence            9999999875321 11111111   11257888888 89999998776                                


Q ss_pred             CCceEEEEEECCC-CcEEEEEeCCCC---------CcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          168 KGAAAKVVKVSAN-GSIIREFNDPNA---------KNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       168 ~~~~~~v~~~~~~-G~~~~~~~~~~g---------~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                          +.|.+||++ |+++..+..+..         .....+..++.+  ++++||++-..+.|.++++
T Consensus       172 ----~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          172 ----DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             ----SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             ----CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence                689999985 899888865310         001234566654  5799999999999999986

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=6.1e-10  Score=92.60  Aligned_cols=161  Identities=14%  Similarity=0.166  Sum_probs=109.8

Q ss_pred             eeeeccccccccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCC
Q 046107            3 KIHLCHLIRFANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGD   81 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~   81 (224)
                      +.+-...+..+++++++++ +.+|+++..                 .+.|+++++++++.+.+. ....+.+|++++||+
T Consensus        41 ~~~~~~~~~~~egp~~~~~~~~l~~~d~~-----------------~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~  102 (326)
T 2ghs_A           41 RVLDETPMLLGEGPTFDPASGTAWWFNIL-----------------ERELHELHLASGRKTVHA-LPFMGSALAKISDSK  102 (326)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGG-----------------GTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTE
T ss_pred             EEeeccCCCCCcCCeEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCe
Confidence            4555556778899999986 689999842                 468999999877665443 235678999999986


Q ss_pred             EEEEEeCCCCeEEEEEccCCCcccceEeeccC----CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           82 FVVVCESWKFRCIKHWLKLGDKRDREIFIENL----PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                       +|++.  ...|++++++++.   .+.+....    ...+.++++|++|++|++......                    
T Consensus       103 -l~v~~--~~gl~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~--------------------  156 (326)
T 2ghs_A          103 -QLIAS--DDGLFLRDTATGV---LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--------------------  156 (326)
T ss_dssp             -EEEEE--TTEEEEEETTTCC---EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--------------------
T ss_pred             -EEEEE--CCCEEEEECCCCc---EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC--------------------
Confidence             77876  3569999986532   23332211    125788999999999998864310                    


Q ss_pred             hhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          158 ELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                ....+.|++++ +|+.......     ...+..++.+  +..||+++...+.|.++++
T Consensus       157 ----------~~~~~~l~~~~-~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~  208 (326)
T 2ghs_A          157 ----------ETGAGSIYHVA-KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  208 (326)
T ss_dssp             ----------CTTCEEEEEEE-TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             ----------CCCceEEEEEe-CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEECCCCEEEEEEc
Confidence                      00117899999 7876544321     1224445544  4579999988899998875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.24  E-value=1.5e-09  Score=89.16  Aligned_cols=160  Identities=12%  Similarity=0.140  Sum_probs=105.1

Q ss_pred             ccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCC-ceEEEEeCCCCeE----EEEecCccccceeEEecCCCEEE
Q 046107           11 RFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPH-GQLLRYDPSSKQV----SIVLEGLYFANGVALSKHGDFVV   84 (224)
Q Consensus        11 ~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~g~~----~~~~~~~~~pngia~~~dg~~Ly   84 (224)
                      ..|+++++++||+ +|+++..               ... -.+|.++.+ +.+    .........|.+++++|||++||
T Consensus       128 ~~~~~~~~spdg~~l~~~~~~---------------~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~  191 (331)
T 3u4y_A          128 YDAVGIAISPNGNGLILIDRS---------------SANTVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAF  191 (331)
T ss_dssp             TTEEEEEECTTSSCEEEEEET---------------TTTEEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEE
T ss_pred             CCccceEECCCCCEEEEEecC---------------CCceEEEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEE
Confidence            3568999999995 8888743               112 235666644 333    12234456689999999999999


Q ss_pred             EEeCCCCeEEEEEccCCCc-ccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           85 VCESWKFRCIKHWLKLGDK-RDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      ++....+.|..|+++.... .....+  .....|.++++++||+ +|++....                           
T Consensus       192 v~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~---------------------------  242 (331)
T 3u4y_A          192 VANLIGNSIGILETQNPENITLLNAV--GTNNLPGTIVVSRDGSTVYVLTEST---------------------------  242 (331)
T ss_dssp             EEETTTTEEEEEECSSTTSCEEEEEE--ECSSCCCCEEECTTSSEEEEECSSE---------------------------
T ss_pred             EEeCCCCeEEEEECCCCcccceeeec--cCCCCCceEEECCCCCEEEEEEcCC---------------------------
Confidence            9999899999999875322 112222  1235789999999999 77776654                           


Q ss_pred             hhhcCCCceEEEEEECCC-CcE--EEEEeCC---CCCcccceeEEE--EECCEEEEEeCCCCeEEEeeCC
Q 046107          163 LMSTGKGAAAKVVKVSAN-GSI--IREFNDP---NAKNISFVTSAL--EFQGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~-G~~--~~~~~~~---~g~~~~~~t~~~--~~~g~lyv~~~~~~~i~~~~~~  224 (224)
                               +.|..+|.+ |+.  +..+...   .+........++  +++..||+++..++.|.++++.
T Consensus       243 ---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          243 ---------VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             ---------EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ---------CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence                     678889976 665  3333221   011111112233  3467899999999999998863

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.22  E-value=1.5e-09  Score=90.68  Aligned_cols=157  Identities=16%  Similarity=0.181  Sum_probs=100.2

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCce--EEEEeCCCC----e-E-------EEEecCccccceeEE
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQ--LLRYDPSSK----Q-V-------SIVLEGLYFANGVAL   76 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~g----~-~-------~~~~~~~~~pngia~   76 (224)
                      .++.+++++||+ +|+++..                 .+.  +|.++..++    + +       .........|+++++
T Consensus       156 ~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  218 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF  218 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE
T ss_pred             cceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE
Confidence            357799999996 8888742                 334  455565543    2 2       122344567899999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccC--CCCCCceEECCCCC-EEEEEec-CCchhhhhhccChhHHHH
Q 046107           77 SKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENL--PGGPDNINLAPDGS-FWISLIK-MNSSAVETVHSSKNRKQL  152 (224)
Q Consensus        77 ~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~dG~-l~va~~~-~~~~~~~~~~~~p~~~~~  152 (224)
                      +|||++||+++...+.|..|+++++.+.....+....  ...|.++++++||+ +|+++.. .+.               
T Consensus       219 spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~---------------  283 (361)
T 3scy_A          219 NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG---------------  283 (361)
T ss_dssp             CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE---------------
T ss_pred             cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE---------------
Confidence            9999999999988899999998743222222121111  12467999999998 6777765 310               


Q ss_pred             HhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEee
Q 046107          153 LEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~  222 (224)
                                         -.|+.+++ +|++...-..+.+.   .+..++.+  +..||+++..++.|.++.
T Consensus       284 -------------------i~v~~~~~~~g~~~~~~~~~~g~---~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          284 -------------------VAIFKVDETNGTLTKVGYQLTGI---HPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             -------------------EEEEEECTTTCCEEEEEEEECSS---CCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             -------------------EEEEEEcCCCCcEEEeeEecCCC---CCceEEECCCCCEEEEEECCCCCEEEEE
Confidence                               46777874 46643332222232   23444443  567999998889988854

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.21  E-value=1e-09  Score=89.50  Aligned_cols=151  Identities=13%  Similarity=0.101  Sum_probs=105.9

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG--LYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~--~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      .++++++.++|+++++.                   .+.|+.+|++ |+...-...  ....+++.+.+||+ ++|++..
T Consensus        38 ~~~~~~~~pdG~ilvs~-------------------~~~V~~~d~~-G~~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~   96 (276)
T 3no2_A           38 ECNSVAATKAGEILFSY-------------------SKGAKMITRD-GRELWNIAAPAGCEMQTARILPDGN-ALVAWCG   96 (276)
T ss_dssp             CCCEEEECTTSCEEEEC-------------------BSEEEEECTT-SCEEEEEECCTTCEEEEEEECTTSC-EEEEEES
T ss_pred             CCcCeEECCCCCEEEeC-------------------CCCEEEECCC-CCEEEEEcCCCCccccccEECCCCC-EEEEecC
Confidence            57889999999999953                   3468889985 553332222  13456788999998 7777766


Q ss_pred             -CCeEEEEEccCCCcccceEeec--cCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           90 -KFRCIKHWLKLGDKRDREIFIE--NLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        90 -~~~I~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                       .++|+.++++|..+.+...-..  .....|.+++++++|+++++....                               
T Consensus        97 ~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~-------------------------------  145 (276)
T 3no2_A           97 HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT-------------------------------  145 (276)
T ss_dssp             TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT-------------------------------
T ss_pred             CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC-------------------------------
Confidence             8899999887643222211110  111257789999999999988766                               


Q ss_pred             CCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                           +.|..+|++|+.+..+..+..    ..+.....+|++++++..+++|..++.
T Consensus       146 -----~~v~~~d~~G~~~w~~~~~~~----~~~~~~~~~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          146 -----SEVREIAPNGQLLNSVKLSGT----PFSSAFLDNGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             -----TEEEEECTTSCEEEEEECSSC----CCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred             -----CEEEEECCCCCEEEEEECCCC----ccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence                 689999999999999876422    122333457899999999889988764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.20  E-value=3.3e-09  Score=89.12  Aligned_cols=166  Identities=12%  Similarity=0.018  Sum_probs=102.8

Q ss_pred             cccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC-CCeEEEEe--c---CccccceeEEecCCCE
Q 046107           10 IRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS-SKQVSIVL--E---GLYFANGVALSKHGDF   82 (224)
Q Consensus        10 ~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~g~~~~~~--~---~~~~pngia~~~dg~~   82 (224)
                      ...++++++++||+ +|+++..                 .+.|+.++.+ +++.+.+.  .   ....|.+++++|||++
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~  206 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY  206 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             CCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE
Confidence            35688999999996 7777732                 3567777765 56654332  1   2467899999999999


Q ss_pred             EEEEeCCCCeEEEEEccC--CCccc-ceEeeccC---CC---------CCCceE-ECCCCC-EEEEEecCCchhhhhhcc
Q 046107           83 VVVCESWKFRCIKHWLKL--GDKRD-REIFIENL---PG---------GPDNIN-LAPDGS-FWISLIKMNSSAVETVHS  145 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~--~~~~~-~~~~~~~~---~~---------~p~~i~-~d~dG~-l~va~~~~~~~~~~~~~~  145 (224)
                      ||+++...+.|..|+.+.  +.+.. .+.+....   .+         .|.+++ +++||+ +|+++...+.        
T Consensus       207 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~--------  278 (365)
T 1jof_A          207 LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF--------  278 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--------
T ss_pred             EEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC--------
Confidence            999998888888887642  22110 11111111   11         377899 999997 7777765420        


Q ss_pred             ChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEE---EeCCCCCcccceeEEEE---ECCEEEEEeCCCCeEE
Q 046107          146 SKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIRE---FNDPNAKNISFVTSALE---FQGNLYLASINSNFIG  219 (224)
Q Consensus       146 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~---~~~~~g~~~~~~t~~~~---~~g~lyv~~~~~~~i~  219 (224)
                                           ..+..-.|+.++++|++...   +..+... ... -.+.+   +++.||+++..++.|.
T Consensus       279 ---------------------~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~-~~~-~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          279 ---------------------ELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-GHS-NAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             ---------------------TSCCEEEEEEECTTSCEEEEEEEEECSSCC-TTC-CCEEECTTCTTEEEEECSSSCEEE
T ss_pred             ---------------------CCCCeEEEEEECCCCCEEEeeeeeecCCCC-ccc-ceecCCCcCCCEEEEEEcCCCeEE
Confidence                                 00001356777767887653   3222111 111 12345   5789999998888888


Q ss_pred             EeeC
Q 046107          220 KLPL  223 (224)
Q Consensus       220 ~~~~  223 (224)
                      ++++
T Consensus       336 v~~~  339 (365)
T 1jof_A          336 IYRW  339 (365)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.20  E-value=1.3e-09  Score=91.93  Aligned_cols=181  Identities=14%  Similarity=0.084  Sum_probs=106.7

Q ss_pred             ccccceEEecCCcEEEEeCCCCC-CcchhhhhhccCCCCceEEEEeCC--CCeEEEE-ecC------ccccceeEEec--
Q 046107           11 RFANDVIEASDGSLYITVSSTKF-APKAYYLDLVEGEPHGQLLRYDPS--SKQVSIV-LEG------LYFANGVALSK--   78 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~--~g~~~~~-~~~------~~~pngia~~~--   78 (224)
                      ..|+||+++++|.+|++... .+ +..     .+.....|.|+++|++  +++.+.+ .++      .-.|.||.+.+  
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~-~~pg~~-----~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~  123 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGL-KYPGIM-----SFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD  123 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECC-C----------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred             CCcceeEEcCCCeEEEEecc-ccCCCc-----ccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence            56899999999999998632 11 111     1112358999999987  2344443 233      24789999977  


Q ss_pred             CCC-EEEEEeCC--CCe--EEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec-CCchhhhhhccChhHHHH
Q 046107           79 HGD-FVVVCESW--KFR--CIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK-MNSSAVETVHSSKNRKQL  152 (224)
Q Consensus        79 dg~-~Lyv~~~~--~~~--I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~-~~~~~~~~~~~~p~~~~~  152 (224)
                      ||+ +|||++..  ..+  |++++.++....-...+-......|++++++++|++|+++.- ...         |..+ .
T Consensus       124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd---------~~~~-~  193 (355)
T 3sre_A          124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFID---------PYLK-S  193 (355)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSS---------HHHH-H
T ss_pred             CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCC---------cccc-c
Confidence            353 69999866  344  555555432211111111112247999999999999998752 211         1111 0


Q ss_pred             HhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          153 LEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                             .+..   ...+.+.|++++++ +..... +  +  +..+..++.+  +..||+++...++|.++++
T Consensus       194 -------~e~~---~~~~~g~vyr~d~~-~~~~~~-~--~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          194 -------WEMH---LGLAWSFVTYYSPN-DVRVVA-E--G--FDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             -------HHHH---TTCCCEEEEEECTT-CCEEEE-E--E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             -------chhh---ccCCccEEEEEECC-eEEEee-c--C--CcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence                   0000   11123899999994 433222 1  2  3345566654  5689999999999999986

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.18  E-value=5.9e-09  Score=84.89  Aligned_cols=144  Identities=14%  Similarity=0.118  Sum_probs=103.6

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--c----CccccceeEEecCCCEEEEE
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--E----GLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~----~~~~pngia~~~dg~~Lyv~   86 (224)
                      .+++.+.+||++++++..                ..++|+.+++++..+..+.  .    ....++++++.++|+ ++|+
T Consensus        79 ~~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~  141 (276)
T 3no2_A           79 MQTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVP  141 (276)
T ss_dssp             EEEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEE
T ss_pred             ccccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEE
Confidence            346677788888888632                1468888998733332221  1    124577899999998 7788


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      ....++|..++++|..     +|.-.....|.+..+.++|++++++...                               
T Consensus       142 ~~~~~~v~~~d~~G~~-----~w~~~~~~~~~~~~~~~~g~~~v~~~~~-------------------------------  185 (276)
T 3no2_A          142 LFATSEVREIAPNGQL-----LNSVKLSGTPFSSAFLDNGDCLVACGDA-------------------------------  185 (276)
T ss_dssp             ETTTTEEEEECTTSCE-----EEEEECSSCCCEEEECTTSCEEEECBTT-------------------------------
T ss_pred             ecCCCEEEEECCCCCE-----EEEEECCCCccceeEcCCCCEEEEeCCC-------------------------------
Confidence            8889999999997532     3321234578899999999999998776                               


Q ss_pred             CCCceEEEEEECCC-CcEEEEEeCC--CCCcccceeEEEE-ECCEEEEEeCC
Q 046107          167 GKGAAAKVVKVSAN-GSIIREFNDP--NAKNISFVTSALE-FQGNLYLASIN  214 (224)
Q Consensus       167 ~~~~~~~v~~~~~~-G~~~~~~~~~--~g~~~~~~t~~~~-~~g~lyv~~~~  214 (224)
                           ++|+.+|++ |+++..+...  .+..+..++.+.. .+|++|++++.
T Consensus       186 -----~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~  232 (276)
T 3no2_A          186 -----HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ  232 (276)
T ss_dssp             -----SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred             -----CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEecc
Confidence                 689999999 9999988643  2323556676654 58999999973

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.17  E-value=3.1e-09  Score=89.44  Aligned_cols=160  Identities=8%  Similarity=0.081  Sum_probs=105.6

Q ss_pred             cccccceEEec----CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC--------eEEEEec-----Cccccc
Q 046107           10 IRFANDVIEAS----DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK--------QVSIVLE-----GLYFAN   72 (224)
Q Consensus        10 ~~~~n~v~~~~----~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g--------~~~~~~~-----~~~~pn   72 (224)
                      ...+.+|+++|    +|.||++.+.               ...++|+|+..+.+        +.+.+..     .....+
T Consensus        79 ~~GllGia~~Pdf~~~g~lYv~yt~---------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~  143 (347)
T 3das_A           79 EGGLLGIALSPDYASDHMVYAYFTS---------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGG  143 (347)
T ss_dssp             TBSEEEEEECTTHHHHCEEEEEEEC---------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCC
T ss_pred             CCCceeeEeccccccCCEEEEEEec---------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCc
Confidence            45678999998    4889998642               12457888875431        1233322     234566


Q ss_pred             eeEEecCCCEEEEEeC-------------CCCeEEEEEccCCC-----cccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107           73 GVALSKHGDFVVVCES-------------WKFRCIKHWLKLGD-----KRDREIFIENLPGGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        73 gia~~~dg~~Lyv~~~-------------~~~~I~~~~~~~~~-----~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~  134 (224)
                      .|+++|||. |||+..             ..++|+|++++|..     ....+++..+ ...|.+|++|++|+||+++.+
T Consensus       144 ~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G-~RNp~Gla~dp~G~L~~~d~g  221 (347)
T 3das_A          144 RIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYG-HRNVQGLAWDDKQRLFASEFG  221 (347)
T ss_dssp             CEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBC-CSBCCEEEECTTCCEEEEECC
T ss_pred             cccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeC-CCCcceEEECCCCCEEEEecC
Confidence            799999996 999953             36899999998631     1123455432 247999999999999999987


Q ss_pred             CCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCc-----------------EEEEEeCCCCCcccc
Q 046107          135 MNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGS-----------------IIREFNDPNAKNISF  197 (224)
Q Consensus       135 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~-----------------~~~~~~~~~g~~~~~  197 (224)
                      ....                                 ..|.++.+.+.                 ++..+. +.   ...
T Consensus       222 ~~~~---------------------------------deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~---~~a  264 (347)
T 3das_A          222 QDTW---------------------------------DELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS-TD---EAS  264 (347)
T ss_dssp             SSSC---------------------------------EEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-TT---TCC
T ss_pred             CCCC---------------------------------ceeeEEcCCCEecCCcccCCCCCccccCCcEecC-CC---CCC
Confidence            6311                                 34444443321                 111111 11   125


Q ss_pred             eeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          198 VTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       198 ~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      ++.++..+|.+|++.+.+.+|.++++
T Consensus       265 p~G~~~~~g~~~~~~l~~~~l~~v~~  290 (347)
T 3das_A          265 PSGIAYAEGSVWMAGLRGERLWRIPL  290 (347)
T ss_dssp             EEEEEEETTEEEEEESTTCSEEEEEE
T ss_pred             CcceEEEcCceeeccccCCEEEEEEe
Confidence            67888889999999999999999875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.17  E-value=5.3e-09  Score=84.32  Aligned_cols=154  Identities=8%  Similarity=0.076  Sum_probs=104.0

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      +..+++++ +++||+++.                 ..+.++.+|+++.++..-....  +.|..+++|++.||+++. ++
T Consensus        88 FgeGit~~-g~~ly~ltw-----------------~~~~v~v~D~~t~~~~~ti~~~--~eG~glt~dg~~L~~SdG-s~  146 (262)
T 3nol_A           88 FGEGISDW-KDKIVGLTW-----------------KNGLGFVWNIRNLRQVRSFNYD--GEGWGLTHNDQYLIMSDG-TP  146 (262)
T ss_dssp             CEEEEEEE-TTEEEEEES-----------------SSSEEEEEETTTCCEEEEEECS--SCCCCEEECSSCEEECCS-SS
T ss_pred             ceeEEEEe-CCEEEEEEe-----------------eCCEEEEEECccCcEEEEEECC--CCceEEecCCCEEEEECC-CC
Confidence            34566765 458999863                 3678999999866654333322  255555577888999995 78


Q ss_pred             eEEEEEccCCC-cccceEeecc-CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           92 RCIKHWLKLGD-KRDREIFIEN-LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        92 ~I~~~~~~~~~-~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      +|+.+|+.+.+ .+...+-..+ ....++.+.+. +|.+|++.+..                                  
T Consensus       147 ~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~----------------------------------  191 (262)
T 3nol_A          147 VLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT----------------------------------  191 (262)
T ss_dssp             EEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS----------------------------------
T ss_pred             eEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC----------------------------------
Confidence            99999987532 1122221111 11344557776 89999998876                                  


Q ss_pred             ceEEEEEECCC-CcEEEEEeCCCC--------CcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSAN-GSIIREFNDPNA--------KNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~~-G~~~~~~~~~~g--------~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        ..|.+|||+ |+++..+..+.-        .....+..++.+  .++|||+.-.-+.+.+++|
T Consensus       192 --~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          192 --NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             --SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             --CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence              689999985 999999876421        011234566655  5999999999999999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.16  E-value=1.5e-09  Score=89.16  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=105.4

Q ss_pred             ccccc-eEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 046107           11 RFAND-VIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~-v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ..|.. +++.++|+..++...              ....+.|+.+|.++++..........|++++++|||++||+++..
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEET
T ss_pred             CCCccceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecC
Confidence            34556 889999874444321              011238999998877766555566778999999999999999987


Q ss_pred             CCe-EEEEEccCC-Ccccc-eEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           90 KFR-CIKHWLKLG-DKRDR-EIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        90 ~~~-I~~~~~~~~-~~~~~-~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      .+. |..|+++.. .+... .... .....|.+++++++|+ +|++....                              
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~------------------------------  197 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG------------------------------  197 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT------------------------------
T ss_pred             CCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC------------------------------
Confidence            777 888887631 11111 1111 1234689999999998 88887655                              


Q ss_pred             cCCCceEEEEEECCC-CcE---EEEEeCCCCCcccceeEEEE--ECCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSAN-GSI---IREFNDPNAKNISFVTSALE--FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~-G~~---~~~~~~~~g~~~~~~t~~~~--~~g~lyv~~~~~~~i~~~~~  223 (224)
                            +.|..+|.+ |+.   +..+...  .   .+..++.  ++..||+++...+.|.++++
T Consensus       198 ------~~v~v~d~~~~~~~~~~~~~~~~--~---~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          198 ------NSIGILETQNPENITLLNAVGTN--N---LPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             ------TEEEEEECSSTTSCEEEEEEECS--S---CCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             ------CeEEEEECCCCcccceeeeccCC--C---CCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence                  467777764 676   5666532  1   2334443  35569999988888888875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.13  E-value=5.3e-09  Score=84.42  Aligned_cols=153  Identities=10%  Similarity=0.085  Sum_probs=103.2

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      ..+++++ .++||+++.                 ..+.++.+|+++.+...-....  +.|..+.+|+++||+++ .+++
T Consensus        98 geGit~~-g~~Ly~ltw-----------------~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt~Dg~~L~vSd-Gs~~  156 (268)
T 3nok_A           98 AEGLASD-GERLYQLTW-----------------TEGLLFTWSGMPPQRERTTRYS--GEGWGLCYWNGKLVRSD-GGTM  156 (268)
T ss_dssp             EEEEEEC-SSCEEEEES-----------------SSCEEEEEETTTTEEEEEEECS--SCCCCEEEETTEEEEEC-SSSE
T ss_pred             eeEEEEe-CCEEEEEEc-----------------cCCEEEEEECCcCcEEEEEeCC--CceeEEecCCCEEEEEC-CCCE
Confidence            3567765 448999863                 3678999999877655433333  34455556788999999 4899


Q ss_pred             EEEEEccCCC-cccceEeecc-CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCc
Q 046107           93 CIKHWLKLGD-KRDREIFIEN-LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGA  170 (224)
Q Consensus        93 I~~~~~~~~~-~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  170 (224)
                      |+.+|+++.+ ....++-... ....++.+.+. +|.+|++.+..                                   
T Consensus       157 l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s-----------------------------------  200 (268)
T 3nok_A          157 LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS-----------------------------------  200 (268)
T ss_dssp             EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC-----------------------------------
T ss_pred             EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC-----------------------------------
Confidence            9999987532 1111111111 11245667776 89999988776                                   


Q ss_pred             eEEEEEECCC-CcEEEEEeCCC---------CCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          171 AAKVVKVSAN-GSIIREFNDPN---------AKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       171 ~~~v~~~~~~-G~~~~~~~~~~---------g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                       ..|.+|||+ |+++..+....         .........++.+  +++||||.-.-+.+.+++|
T Consensus       201 -~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          201 -SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             -SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             -CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence             689999985 99998886421         0111245566655  6899999999999999876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.12  E-value=1.9e-09  Score=93.15  Aligned_cols=121  Identities=14%  Similarity=0.068  Sum_probs=84.6

Q ss_pred             cCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------C
Q 046107           20 SDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES---------W   89 (224)
Q Consensus        20 ~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~---------~   89 (224)
                      +++ ++|+++...  .           ...+.|..+|+.++++.....-...| ||+++|||++|||+++         .
T Consensus        82 ~~~~~vyV~n~~~--~-----------~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~  147 (426)
T 3c75_H           82 PDARRVYIQDPAH--F-----------AAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKR  147 (426)
T ss_dssp             CCTTEEEEEECTT--T-----------CSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             CCCCEEEEECCCc--C-----------CCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCC
Confidence            354 699998530  0           01178999999888776555555678 9999999999999996         3


Q ss_pred             CCeEEEEEccCCCcccceEeecc-----CCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           90 KFRCIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      .+.|..+|+...+.. .++-...     ....|.++++++||+ +|+++....                           
T Consensus       148 ~~~VsviD~~t~~vv-~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~---------------------------  199 (426)
T 3c75_H          148 TDYVEVFDPVTFLPI-ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA---------------------------  199 (426)
T ss_dssp             EEEEEEECTTTCCEE-EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS---------------------------
T ss_pred             CCEEEEEECCCCcEE-EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC---------------------------
Confidence            568999998653210 1111110     013699999999996 999876521                           


Q ss_pred             hhcCCCceEEEEEECCC-CcEEEEEeCC
Q 046107          164 MSTGKGAAAKVVKVSAN-GSIIREFNDP  190 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~-G~~~~~~~~~  190 (224)
                              +.|..||.. ++++..+..+
T Consensus       200 --------~~VsVID~~t~kvv~~I~v~  219 (426)
T 3c75_H          200 --------PAVGVVDLEGKTFDRMLDVP  219 (426)
T ss_dssp             --------CEEEEEETTTTEEEEEEECC
T ss_pred             --------CeEEEEECCCCeEEEEEEcC
Confidence                    578999965 7888888764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.09  E-value=1.6e-08  Score=82.82  Aligned_cols=159  Identities=13%  Similarity=0.135  Sum_probs=98.1

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC---eEEEEecCccccceeEEecCCCEEEEEe
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK---QVSIVLEGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g---~~~~~~~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      .|.++++.++|+ +|++...                 .+.|..++.+.+   +..........+++++++|||++||+++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  147 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA  147 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecC-----------------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec
Confidence            678999999986 7777632                 455666665222   2222344566789999999999999999


Q ss_pred             CCCCeEEEEEccC-CCcccce--EeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           88 SWKFRCIKHWLKL-GDKRDRE--IFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        88 ~~~~~I~~~~~~~-~~~~~~~--~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ...+.|..|+++. +......  .+.......|.+++++++|+ +|++....                            
T Consensus       148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~----------------------------  199 (343)
T 1ri6_A          148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN----------------------------  199 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT----------------------------
T ss_pred             CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC----------------------------
Confidence            7888999999864 2221111  11111223688999999998 77776444                            


Q ss_pred             hhcCCCceEEEEEECC---CCcE--EEEEe-CCCC-CcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSA---NGSI--IREFN-DPNA-KNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~---~G~~--~~~~~-~~~g-~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                              +.|..++.   .|++  ...+. .+.+ .....+..++..  +..||++....+.|.++++
T Consensus       200 --------~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~  260 (343)
T 1ri6_A          200 --------SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV  260 (343)
T ss_dssp             --------TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             --------CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence                    34444443   3443  22232 2222 111234444443  4578888888888888765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.08  E-value=3.7e-09  Score=90.10  Aligned_cols=122  Identities=16%  Similarity=0.143  Sum_probs=84.4

Q ss_pred             EecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--------
Q 046107           18 EASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES--------   88 (224)
Q Consensus        18 ~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~--------   88 (224)
                      ..|+| ++|++|...             ....+.|+.+|.+++++.........|+ |+++|||++|||+++        
T Consensus        40 ~~pd~~~vyV~~~~~-------------~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G  105 (386)
T 3sjl_D           40 PAPDARRVYVNDPAH-------------FAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARG  105 (386)
T ss_dssp             CCCCTTEEEEEECGG-------------GCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEE
T ss_pred             cCCCCCEEEEEcCcc-------------cCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccC
Confidence            35676 799998530             1235799999998777665555556685 999999999999985        


Q ss_pred             -CCCeEEEEEccCCCcccceEe-ecc-----CCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           89 -WKFRCIKHWLKLGDKRDREIF-IEN-----LPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        89 -~~~~I~~~~~~~~~~~~~~~~-~~~-----~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                       ..+.|..||....+.  ...+ ...     ....|.++++++||+ +|+++....                        
T Consensus       106 ~~~~~VsviD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~------------------------  159 (386)
T 3sjl_D          106 ERTDYVEVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA------------------------  159 (386)
T ss_dssp             EEEEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS------------------------
T ss_pred             CCCCEEEEEECCCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC------------------------
Confidence             246799999865321  1111 110     012799999999997 899876421                        


Q ss_pred             HhhhhcCCCceEEEEEECCC-CcEEEEEeCC
Q 046107          161 NQLMSTGKGAAAKVVKVSAN-GSIIREFNDP  190 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~  190 (224)
                                 +.|..+|.+ ++++..+..+
T Consensus       160 -----------~~VsVID~~t~~vv~tI~v~  179 (386)
T 3sjl_D          160 -----------PAVGVVDLEGKAFKRMLDVP  179 (386)
T ss_dssp             -----------CEEEEEETTTTEEEEEEECC
T ss_pred             -----------CeEEEEECCCCcEEEEEECC
Confidence                       567888854 7777777654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.07  E-value=1.3e-08  Score=86.47  Aligned_cols=129  Identities=9%  Similarity=-0.054  Sum_probs=82.8

Q ss_pred             eEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCeEEEEEccCCCcccceEe-ec--c---CC
Q 046107           50 QLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES---------WKFRCIKHWLKLGDKRDREIF-IE--N---LP  114 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~---------~~~~I~~~~~~~~~~~~~~~~-~~--~---~~  114 (224)
                      .|+++|++++++.........| +|+++|||++|||++.         .++.|..|++...+.  ...+ ..  .   ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i~~~~~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEEECCCccccccC
Confidence            7899999877765445455667 9999999999999985         356799999864211  1111 10  0   01


Q ss_pred             CCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEE-EeCCCC
Q 046107          115 GGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIRE-FNDPNA  192 (224)
Q Consensus       115 ~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~-~~~~~g  192 (224)
                      ..|.++++++||+ +|+++....                                   +.|..+|..++++.. +..+..
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~-----------------------------------~~v~viD~t~~~~~~~i~~~~~  169 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAG-----------------------------------PAVGLVVQGGSSDDQLLSSPTC  169 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCC-----------------------------------CeEEEEECCCCEEeEEcCCCce
Confidence            3689999999997 888875421                                   467778833677766 644321


Q ss_pred             CcccceeEEEEECCEEEEEeCCCCeEEEee
Q 046107          193 KNISFVTSALEFQGNLYLASINSNFIGKLP  222 (224)
Q Consensus       193 ~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~  222 (224)
                            ..+.+.+.+.|++...++.+.+++
T Consensus       170 ------~~~~~~~~~~~~~~~~dg~~~~vd  193 (373)
T 2mad_H          170 ------YHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             ------EEEEeCCCceEEEEcCCCCEEEEE
Confidence                  122334555666666555555544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.06  E-value=2.1e-08  Score=80.09  Aligned_cols=154  Identities=8%  Similarity=0.089  Sum_probs=102.6

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      +..+++++ +++||+.+.                 ..+.++.+|+++.+...-.....  .|..+.+|++.||+++. ++
T Consensus        66 fgeGi~~~-~~~ly~ltw-----------------~~~~v~v~D~~tl~~~~ti~~~~--~Gwglt~dg~~L~vSdg-s~  124 (243)
T 3mbr_X           66 FGAGIVAW-RDRLIQLTW-----------------RNHEGFVYDLATLTPRARFRYPG--EGWALTSDDSHLYMSDG-TA  124 (243)
T ss_dssp             CEEEEEEE-TTEEEEEES-----------------SSSEEEEEETTTTEEEEEEECSS--CCCEEEECSSCEEEECS-SS
T ss_pred             ceeEEEEe-CCEEEEEEe-----------------eCCEEEEEECCcCcEEEEEeCCC--CceEEeeCCCEEEEECC-CC
Confidence            34566665 468998863                 36789999998766543333323  45555577888999995 88


Q ss_pred             eEEEEEccCCC-cccceEeeccCC-CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           92 RCIKHWLKLGD-KRDREIFIENLP-GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        92 ~I~~~~~~~~~-~~~~~~~~~~~~-~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      +|+.+|+.+.+ .+..++-....+ ..++.+.+. +|.+|++.+..                                  
T Consensus       125 ~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s----------------------------------  169 (243)
T 3mbr_X          125 VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT----------------------------------  169 (243)
T ss_dssp             EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT----------------------------------
T ss_pred             eEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC----------------------------------
Confidence            99999987532 111222111111 244556665 79999888776                                  


Q ss_pred             ceEEEEEECCC-CcEEEEEeCCCC---------CcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSAN-GSIIREFNDPNA---------KNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~~-G~~~~~~~~~~g---------~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        ..|.+|||. |+++..+....-         ........++.+  .++||||.-.-+.+.+++|
T Consensus       170 --~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~  233 (243)
T 3mbr_X          170 --SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL  233 (243)
T ss_dssp             --TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             --CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence              589999985 999998864210         011244566655  6999999999999999876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.06  E-value=3e-08  Score=83.16  Aligned_cols=150  Identities=15%  Similarity=0.152  Sum_probs=108.7

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      .+..+++.++|+ +|++..                 ..+.|..+|..+++..........+++++++||+++||++....
T Consensus        33 ~~~~~~~s~dg~~l~~~~~-----------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~   95 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANA-----------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMAS   95 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEG-----------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT
T ss_pred             CcceEEECCCCCEEEEECC-----------------CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCC
Confidence            467899999986 667752                 25789999987777766555555889999999999999999888


Q ss_pred             CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           91 FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      +.|..+++.+...  ...+  .....+.+++++++|+ +|++....                                  
T Consensus        96 ~~v~v~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~----------------------------------  137 (391)
T 1l0q_A           96 STLSVIDTTSNTV--AGTV--KTGKSPLGLALSPDGKKLYVTNNGD----------------------------------  137 (391)
T ss_dssp             TEEEEEETTTTEE--EEEE--ECSSSEEEEEECTTSSEEEEEETTT----------------------------------
T ss_pred             CEEEEEECCCCeE--EEEE--eCCCCcceEEECCCCCEEEEEeCCC----------------------------------
Confidence            9999999875321  1122  1234678999999998 66776554                                  


Q ss_pred             ceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        +.|..+|. .++.+..+....     .+..++..  +..||+++...+.|.++++
T Consensus       138 --~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          138 --KTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             --TEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             --CEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence              57888885 467777665422     23444443  5578888888888888875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.03  E-value=5.6e-09  Score=88.07  Aligned_cols=171  Identities=13%  Similarity=0.091  Sum_probs=105.2

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-------------eEEEEecCccccceeEE
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-------------QVSIVLEGLYFANGVAL   76 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-------------~~~~~~~~~~~pngia~   76 (224)
                      ...+++|++++||.||++..... .. ....+  .....|+|+|+++++.             ..+.+..++..|+|+++
T Consensus       129 ~h~~~~l~~~pdG~Lyv~~Gd~~-~~-~~~q~--~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~  204 (353)
T 2g8s_A          129 NHFGGRLVFDGKGYLFIALGENN-QR-PTAQD--LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAM  204 (353)
T ss_dssp             SCCCCCEEECSSSEEEEEECCTT-CG-GGGGC--TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEE
T ss_pred             cccCccEEECCCCcEEEEECCCC-CC-CccCC--CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEE
Confidence            45688999999999999974311 10 00000  1234689999999843             24556778899999999


Q ss_pred             ecCCCEEEEEeCCC---CeEEEEEccCCCcccc---------------------eEee----c-cCCCCCCceEECC---
Q 046107           77 SKHGDFVVVCESWK---FRCIKHWLKLGDKRDR---------------------EIFI----E-NLPGGPDNINLAP---  124 (224)
Q Consensus        77 ~~dg~~Lyv~~~~~---~~I~~~~~~~~~~~~~---------------------~~~~----~-~~~~~p~~i~~d~---  124 (224)
                      +|+...||+++...   .+|.++...+ ..+-.                     ..+.    . .....|.|+++..   
T Consensus       205 d~~~g~l~~~d~g~~~~dei~~i~~G~-nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~  283 (353)
T 2g8s_A          205 NPWSNALWLNEHGPRGGDEINIPQKGK-NYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDK  283 (353)
T ss_dssp             ETTTTEEEEEEECSBSCEEEECCCTTC-BCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSS
T ss_pred             ECCCCCEEEEecCCCCCcEEeEeccCC-cCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCcc
Confidence            99444699999764   3566554321 11100                     0000    0 0112588898864   


Q ss_pred             ----CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCccccee
Q 046107          125 ----DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVT  199 (224)
Q Consensus       125 ----dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t  199 (224)
                          +|++|+++...                                    ++|.+++.+ |+.......-.+ ....+.
T Consensus       284 fp~~~g~l~v~~~~~------------------------------------~~v~~~~~~~~~~~~~~~~~~~-~~~rp~  326 (353)
T 2g8s_A          284 FPQWQQKLFIGALKD------------------------------------KDVIVMSVNGDKVTEDGRILTD-RGQRIR  326 (353)
T ss_dssp             SGGGTTEEEEEETTT------------------------------------TEEEEEEEETTEEEEEEEESGG-GCCCEE
T ss_pred             CcccCCcEEEEEccC------------------------------------CEEEEEEeCCCeEeeeEEcccC-CCCcee
Confidence                58899998876                                    577777755 444332211111 122466


Q ss_pred             EEEEE-CCEEEEE-eCCCCeEEEee
Q 046107          200 SALEF-QGNLYLA-SINSNFIGKLP  222 (224)
Q Consensus       200 ~~~~~-~g~lyv~-~~~~~~i~~~~  222 (224)
                      .++.. +|.||++ +..+++|.|+.
T Consensus       327 ~v~~~pdG~lyv~td~~~g~I~ri~  351 (353)
T 2g8s_A          327 DVRTGPDGYLYVLTDESSGELLKVS  351 (353)
T ss_dssp             EEEECTTSCEEEEECSTTEEEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCEEEEEe
Confidence            66654 7899997 55789999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.03  E-value=7.1e-08  Score=80.84  Aligned_cols=150  Identities=14%  Similarity=0.127  Sum_probs=107.9

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      .++++++.++|+ +|++..                 ..+.|+.+|..+++..........++.++++|||+.||++....
T Consensus       117 ~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          117 SPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             SEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             CcceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCC
Confidence            467888888885 667753                 36789999987777665555667789999999999999999888


Q ss_pred             CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEe--cCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           91 FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLI--KMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                      +.|..+++....  ....+  .....+.+++++++|+ +|++..  ..                                
T Consensus       180 ~~v~~~d~~~~~--~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~--------------------------------  223 (391)
T 1l0q_A          180 MSISVIDTVTNS--VIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYF--------------------------------  223 (391)
T ss_dssp             TEEEEEETTTTE--EEEEE--ECSSEEEEEEECTTSSEEEEEEECSSC--------------------------------
T ss_pred             CEEEEEECCCCe--EEEEE--ecCCCccceEECCCCCEEEEEecCcCC--------------------------------
Confidence            999999986521  11122  1234678999999997 666654  22                                


Q ss_pred             CCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          168 KGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       168 ~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                          +.|..+|.+ ++.+..+....     .+..+...  +..||++....+.|.++++
T Consensus       224 ----~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          224 ----NTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             ----CEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ----CcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence                578888865 67777765432     24444443  5579999888899988876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.01  E-value=1.5e-07  Score=76.92  Aligned_cols=159  Identities=15%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             cccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEE--EeCCCCeEEEE--ecCccccceeEEecCCCEEE
Q 046107           10 IRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLR--YDPSSKQVSIV--LEGLYFANGVALSKHGDFVV   84 (224)
Q Consensus        10 ~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~g~~~~~--~~~~~~pngia~~~dg~~Ly   84 (224)
                      ...|+.+++.++|+ +|++...                 .+.|..  +++++++.+.+  ......|.+++++|||++||
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~   99 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRP-----------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVF   99 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETT-----------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEE
T ss_pred             CCCCceEEECCCCCEEEEeecC-----------------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEE
Confidence            34678899999996 7777632                 245544  55445665543  22234889999999999999


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      ++....+.|..|+++.+......... .....|.+++++++|+ +|++......                          
T Consensus       100 ~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~--------------------------  152 (343)
T 1ri6_A          100 VGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDR--------------------------  152 (343)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTE--------------------------
T ss_pred             EEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCE--------------------------
Confidence            99988889999988421111111111 1234689999999997 7777644310                          


Q ss_pred             hhcCCCceEEEEEECCCCcEEE----EEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSANGSIIR----EFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~----~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                              -.++.++.+|++..    .+..+.+.   .+..++.+  +..||+++...+.|.++++
T Consensus       153 --------v~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~pdg~~l~~~~~~~~~i~~~~~  207 (343)
T 1ri6_A          153 --------ICLFTVSDDGHLVAQDPAEVTTVEGA---GPRHMVFHPNEQYAYCVNELNSSVDVWEL  207 (343)
T ss_dssp             --------EEEEEECTTSCEEEEEEEEEECSTTC---CEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             --------EEEEEecCCCceeeecccccccCCCC---CcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence                    23444555576643    23333332   34445443  4569999988899988876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.01  E-value=3.2e-08  Score=83.11  Aligned_cols=120  Identities=8%  Similarity=0.084  Sum_probs=69.7

Q ss_pred             cccceEEecCCc-EEE--EeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-Ee----cCccccceeEEecCCCEE
Q 046107           12 FANDVIEASDGS-LYI--TVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-VL----EGLYFANGVALSKHGDFV   83 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~--t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~~----~~~~~pngia~~~dg~~L   83 (224)
                      .|..+++++||+ +|+  ++.. .+.  .+............+|.++.+ ++... +.    .....|++++++|||++|
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~-~~~--~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~spdG~~l  159 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQP-PYA--VYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTETYL  159 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSST-TCC--EEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             CCccEEECCCCCEEEEEEecCC-cce--eccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECCCCCEE
Confidence            377889999997 243  3200 000  000000001223456666654 44432 22    245678999999999999


Q ss_pred             EEEeCCCCeEEEEEcc-CCCcccceEeeccC-CCCCCceEECCCCC-EEEEEecC
Q 046107           84 VVCESWKFRCIKHWLK-LGDKRDREIFIENL-PGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~-~~~~~~~~~~~~~~-~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      |+++...++|+.|+++ ++++.....+.... ...|.++++++||+ +|++....
T Consensus       160 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~  214 (365)
T 1jof_A          160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG  214 (365)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC
Confidence            9999888999999986 33221111111001 24699999999996 67776543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.00  E-value=6.2e-08  Score=79.55  Aligned_cols=101  Identities=17%  Similarity=0.099  Sum_probs=72.7

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-------ccccceeEEecCCCEE
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-------LYFANGVALSKHGDFV   83 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-------~~~pngia~~~dg~~L   83 (224)
                      .|+++++.++|+ +|++..                 ..+.|+.+|.++++.......       ...|++++++|||++|
T Consensus        44 ~~~~~~~s~dg~~~~v~~~-----------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  106 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNN-----------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV  106 (349)
T ss_dssp             SSCEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE
T ss_pred             CCceeEECCCCCEEEEEeC-----------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEE
Confidence            478999999985 788863                 257899999887765543332       3348999999999999


Q ss_pred             EEEeCC-----------CCeEEEEEccCCCccc-ceEeeccCCCCCCceEECCCCCEEEE
Q 046107           84 VVCESW-----------KFRCIKHWLKLGDKRD-REIFIENLPGGPDNINLAPDGSFWIS  131 (224)
Q Consensus        84 yv~~~~-----------~~~I~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~dG~l~va  131 (224)
                      |++...           .+.|..+++.++.... ...+  ..+..+.+++++++|++|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~l~~~  164 (349)
T 1jmx_B          107 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVA  164 (349)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEE
T ss_pred             EEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccceeECCCCcEEEc
Confidence            999854           5799999987422211 1222  12346788999999998885

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.98  E-value=4e-08  Score=81.87  Aligned_cols=107  Identities=13%  Similarity=0.147  Sum_probs=73.5

Q ss_pred             cccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe------cCccccceeEEecCCCE
Q 046107           10 IRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL------EGLYFANGVALSKHGDF   82 (224)
Q Consensus        10 ~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~------~~~~~pngia~~~dg~~   82 (224)
                      -..|+.+++.+||+ +|+++..                 .+.|..++.++++.+.+.      .....|.+|+++|||++
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~  272 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEI-----------------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKY  272 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETT-----------------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCC-----------------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCE
Confidence            45688999999996 8888632                 456666665556654432      12355779999999999


Q ss_pred             EEEEeCC-CCeEEEEEcc--CCCcccceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107           83 VVVCESW-KFRCIKHWLK--LGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        83 Lyv~~~~-~~~I~~~~~~--~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      ||+++.. .+.|..|+++  ++.......+.  ....|.++++++||+ +|++....
T Consensus       273 l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          273 LYASNRLKADGVAIFKVDETNGTLTKVGYQL--TGIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             EEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CSSCCCEEEECTTSCEEEEEETTT
T ss_pred             EEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CCCCCceEEECCCCCEEEEEECCC
Confidence            9999988 7888888875  22211111111  134799999999998 77776544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.95  E-value=3.3e-08  Score=88.45  Aligned_cols=98  Identities=14%  Similarity=0.089  Sum_probs=70.3

Q ss_pred             ecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEc
Q 046107           19 ASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWL   98 (224)
Q Consensus        19 ~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~   98 (224)
                      ++.+.+|+++.                 ..+.|..+|.+++++.........|++++++|||++|||++. .+.|..||+
T Consensus       164 d~~~~~~V~~~-----------------~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~  225 (567)
T 1qks_A          164 DLENLFSVTLR-----------------DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDL  225 (567)
T ss_dssp             CGGGEEEEEET-----------------TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEET
T ss_pred             CCCceEEEEeC-----------------CCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC-CCeEEEEEC
Confidence            34557888873                 368999999987776655555667899999999999999974 679999998


Q ss_pred             cCCCcccceEeeccCCCCCCceEEC----CCCC-EEEEEecCC
Q 046107           99 KLGDKRDREIFIENLPGGPDNINLA----PDGS-FWISLIKMN  136 (224)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~p~~i~~d----~dG~-l~va~~~~~  136 (224)
                      ..........+  .....|.+++++    +||+ +|+++...+
T Consensus       226 ~~~t~~~v~~i--~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~  266 (567)
T 1qks_A          226 WMKEPTTVAEI--KIGSEARSIETSKMEGWEDKYAIAGAYWPP  266 (567)
T ss_dssp             TSSSCCEEEEE--ECCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             CCCCCcEeEEE--ecCCCCceeEEccccCCCCCEEEEEEccCC
Confidence            41111111111  123469999999    5996 888887754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.93  E-value=3.9e-08  Score=87.46  Aligned_cols=151  Identities=9%  Similarity=-0.012  Sum_probs=102.5

Q ss_pred             EEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEE
Q 046107           17 IEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKH   96 (224)
Q Consensus        17 ~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~   96 (224)
                      +++++|.+|++..                 ..+.|..+|.+++++.........+++++++|||++||+++.. +.|..|
T Consensus       144 ~~~p~~~~~vs~~-----------------~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~  205 (543)
T 1nir_A          144 DLDLPNLFSVTLR-----------------DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMI  205 (543)
T ss_dssp             CCCGGGEEEEEEG-----------------GGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEE
T ss_pred             ccCCCCEEEEEEc-----------------CCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEE
Confidence            3677889999973                 3678999998877765544423338999999999999999976 999999


Q ss_pred             EccCCCcccceEeeccCCCCCCceEECC----CCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCce
Q 046107           97 WLKLGDKRDREIFIENLPGGPDNINLAP----DGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAA  171 (224)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~----dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  171 (224)
                      ++..........+.  ....|.++++++    ||+ +|+++...                                    
T Consensus       206 D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~------------------------------------  247 (543)
T 1nir_A          206 DLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWP------------------------------------  247 (543)
T ss_dssp             ETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEES------------------------------------
T ss_pred             ECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccC------------------------------------
Confidence            99311111111221  234689999999    997 77777655                                    


Q ss_pred             EEEEEECC-CCcEEEEEeCCCC----C---cccceeEEEE--ECCEEEEEeCCCCeEEEeeC
Q 046107          172 AKVVKVSA-NGSIIREFNDPNA----K---NISFVTSALE--FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       172 ~~v~~~~~-~G~~~~~~~~~~g----~---~~~~~t~~~~--~~g~lyv~~~~~~~i~~~~~  223 (224)
                      +.|..+|. .++.+..+.....    .   .-+.+..++.  +++.+|++....+.|.++++
T Consensus       248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~  309 (543)
T 1nir_A          248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  309 (543)
T ss_dssp             SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence            46777775 4777777754210    0   0012344443  36788888888888888875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.93  E-value=7e-08  Score=79.21  Aligned_cols=102  Identities=10%  Similarity=-0.051  Sum_probs=72.8

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcc--ccceeEEecCCCEEEEEeCCCC
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY--FANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~--~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      .++++.+++.+|++...                 .+.|+.+|.++++.........  .|.+++++|||+.+|++....+
T Consensus         3 ~g~~~~~~~~~~v~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~   65 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNY-----------------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG   65 (349)
T ss_dssp             -CCCCCTTCEEEEEEET-----------------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             ccccccCCCEEEEEeCC-----------------CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCC
Confidence            36777788899999743                 6789999998777654443333  6899999999999999998889


Q ss_pred             eEEEEEccCCCcccceEee-ccC----CCCCCceEECCCCC-EEEEEec
Q 046107           92 RCIKHWLKLGDKRDREIFI-ENL----PGGPDNINLAPDGS-FWISLIK  134 (224)
Q Consensus        92 ~I~~~~~~~~~~~~~~~~~-~~~----~~~p~~i~~d~dG~-l~va~~~  134 (224)
                      .|+.+++++.+.  ...+. ...    ...|.++++++||+ +|++...
T Consensus        66 ~i~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  112 (349)
T 1jmx_B           66 DIYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP  112 (349)
T ss_dssp             EEEEEETTTTEE--EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             cEEEEeCCCCcE--EEEEEcccccccccccccceEECCCCCEEEEEccc
Confidence            999999864321  11111 110    12489999999997 6666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.92  E-value=1.7e-08  Score=87.22  Aligned_cols=80  Identities=13%  Similarity=0.006  Sum_probs=57.5

Q ss_pred             cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-C-------ccccceeEEecCCCE
Q 046107           12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-G-------LYFANGVALSKHGDF   82 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~-------~~~pngia~~~dg~~   82 (224)
                      .| +|++++|| .+|++++....        ...+...+.|..+|..++++..... +       ...|.+++++|||++
T Consensus       120 ~P-gia~SpDgk~lyVan~~~~~--------~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~  190 (426)
T 3c75_H          120 LP-HPVAAEDGSFFAQASTVFER--------IARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKN  190 (426)
T ss_dssp             SC-EEEECTTSSCEEEEEEEEEE--------TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSE
T ss_pred             CC-ceEECCCCCEEEEEeccccc--------cccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence            57 99999998 59999842000        0001125689999998776543221 1       357999999999999


Q ss_pred             EEEEeCC-CCeEEEEEccC
Q 046107           83 VVVCESW-KFRCIKHWLKL  100 (224)
Q Consensus        83 Lyv~~~~-~~~I~~~~~~~  100 (224)
                      |||++.. .+.|..+|+..
T Consensus       191 lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          191 LLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             EEEEECSSSCEEEEEETTT
T ss_pred             EEEEecCCCCeEEEEECCC
Confidence            9999864 78999999864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.92  E-value=2.7e-07  Score=78.24  Aligned_cols=80  Identities=11%  Similarity=0.034  Sum_probs=55.2

Q ss_pred             cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-C-------ccccceeEEecCCCE
Q 046107           12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-G-------LYFANGVALSKHGDF   82 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~-------~~~pngia~~~dg~~   82 (224)
                      .| ++++.+|| .+|+++...  ..      ...+...+.|..+|.++.+...... +       ...|.+++++|||++
T Consensus        68 ~p-~i~~spDg~~lyv~n~~~--~~------~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~  138 (373)
T 2mad_H           68 LP-NPVAAHSGSEFALASTSF--SR------IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             CC-CeEECCCCCEEEEEeccc--cc------cccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence            46 99999998 599997431  00      0011235678899987554432221 1       256889999999999


Q ss_pred             EEEEeCC-CCeEEEEEccCC
Q 046107           83 VVVCESW-KFRCIKHWLKLG  101 (224)
Q Consensus        83 Lyv~~~~-~~~I~~~~~~~~  101 (224)
                      |||++.. .+.|..++ ++.
T Consensus       139 l~v~n~~~~~~v~viD-~t~  157 (373)
T 2mad_H          139 LLFFQFAAGPAVGLVV-QGG  157 (373)
T ss_pred             EEEEecCCCCeEEEEE-CCC
Confidence            9999864 68999999 753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.91  E-value=8.7e-07  Score=71.34  Aligned_cols=156  Identities=14%  Similarity=0.150  Sum_probs=103.7

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEE--eCCCCeEEEE--ec-Cc-ccc-----ceeEEec
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRY--DPSSKQVSIV--LE-GL-YFA-----NGVALSK   78 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~g~~~~~--~~-~~-~~p-----ngia~~~   78 (224)
                      ..-+++|++.++|.+|+++..                 .+.++.+  +.+ ++...+  .. .+ ..+     .|||++|
T Consensus        69 ~~D~EGIa~~~~g~~~vs~E~-----------------~~~l~~~~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~  130 (255)
T 3qqz_A           69 VKDLETIEYIGDNQFVISDER-----------------DYAIYVISLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSR  130 (255)
T ss_dssp             CSSEEEEEECSTTEEEEEETT-----------------TTEEEEEEECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEET
T ss_pred             CCChHHeEEeCCCEEEEEECC-----------------CCcEEEEEcCCC-CeeeeeeeeccccccccccCCcceEEEeC
Confidence            356789999999999898743                 2445544  443 322211  11 11 223     6999999


Q ss_pred             CCCEEEEEeCCC-CeEEEEEccCC-CcccceEeec-----c-CCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhH
Q 046107           79 HGDFVVVCESWK-FRCIKHWLKLG-DKRDREIFIE-----N-LPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNR  149 (224)
Q Consensus        79 dg~~Lyv~~~~~-~~I~~~~~~~~-~~~~~~~~~~-----~-~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~  149 (224)
                      ++++||++.-.. ..|+.++  |- .....++..+     . ....+.++++|+. |++|+.....              
T Consensus       131 ~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s--------------  194 (255)
T 3qqz_A          131 QDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES--------------  194 (255)
T ss_dssp             TTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT--------------
T ss_pred             CCCEEEEEECcCCceEEEEc--ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCC--------------
Confidence            998899988444 4788887  21 0012233211     0 1235789999986 7799987766              


Q ss_pred             HHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCC-----cccceeEEEEE-CCEEEEEeCCCCeEEEee
Q 046107          150 KQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAK-----NISFVTSALEF-QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~-----~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~  222 (224)
                                            ..++++|++|+++..+....|.     .++.+-.++.+ +|+|||++-. |.+++|+
T Consensus       195 ----------------------~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~  250 (255)
T 3qqz_A          195 ----------------------RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFT  250 (255)
T ss_dssp             ----------------------TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEE
T ss_pred             ----------------------CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEE
Confidence                                  5899999999998888776542     24456666654 7999999755 7999885

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.87  E-value=2.7e-07  Score=82.10  Aligned_cols=158  Identities=9%  Similarity=-0.078  Sum_probs=104.6

Q ss_pred             ccccceEEec----CCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC------------ccccce
Q 046107           11 RFANDVIEAS----DGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG------------LYFANG   73 (224)
Q Consensus        11 ~~~n~v~~~~----~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~------------~~~png   73 (224)
                      ..|..+++.+    ||+ +|+++..                 .+.|..+|..++++......            ...+.+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence            4578999999    885 7777621                 46787888776655433322            124568


Q ss_pred             eEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHH
Q 046107           74 VALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQL  152 (224)
Q Consensus        74 ia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~  152 (224)
                      |+++|+++++|++....++|+.++......-....+  .....|.+++++++|+ +|++....                 
T Consensus       285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~-----------------  345 (543)
T 1nir_A          285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNS-----------------  345 (543)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGG-----------------
T ss_pred             EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECCCCCEEEEEecCC-----------------
Confidence            999999999999999999999999864221111111  1234799999999999 56666554                 


Q ss_pred             HhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcc-cceeEEEEECCEEEEEeC-CCCeEEEeeC
Q 046107          153 LEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNI-SFVTSALEFQGNLYLASI-NSNFIGKLPL  223 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~-~~~t~~~~~~g~lyv~~~-~~~~i~~~~~  223 (224)
                                         +.|..+|. .|+++..+........ .......++++.+|+++. ..+.|.++++
T Consensus       346 -------------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          346 -------------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             -------------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             -------------------CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEe
Confidence                               46777886 4888887753211100 112221123589999885 6789998875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.86  E-value=3e-08  Score=84.12  Aligned_cols=143  Identities=6%  Similarity=-0.163  Sum_probs=93.7

Q ss_pred             CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCe
Q 046107           22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES---------WKFR   92 (224)
Q Consensus        22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~---------~~~~   92 (224)
                      .++|+++....             ....+|..+|.+++++.....-...| |++++|||++|||+++         .++.
T Consensus        32 ~~~yV~~~~~~-------------~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~   97 (368)
T 1mda_H           32 RRSHITLPAYF-------------AGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             TEEEEEECTTT-------------CSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CeEEEECCccC-------------CccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCE
Confidence            57999985410             01118999999888766555455668 9999999999999984         3678


Q ss_pred             EEEEEccCCCcccceEe-eccC-----CCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           93 CIKHWLKLGDKRDREIF-IENL-----PGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~-~~~~-----~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      |..||+...+.  ...+ ....     ...|.++++++||+ +|+++....                             
T Consensus        98 VsviD~~T~~v--v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~-----------------------------  146 (368)
T 1mda_H           98 VEVFDPVTFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS-----------------------------  146 (368)
T ss_dssp             EEEECTTTCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS-----------------------------
T ss_pred             EEEEECCCCCE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC-----------------------------
Confidence            99999875321  1111 1100     13699999999995 999987531                             


Q ss_pred             cCCCceEEEEE--ECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVK--VSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~--~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                            ..|..  +|..-  +..+..+..      ..+.+.+.++|++....+++..+++
T Consensus       147 ------~~v~V~~iD~~t--v~~i~v~~~------~~~~p~g~~~~~~~~~dg~~~~vd~  192 (368)
T 1mda_H          147 ------AAAGLSVPGASD--DQLTKSASC------FHIHPGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             ------CEEEEEETTTEE--EEEEECSSC------CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred             ------CeEEEEEEchhh--ceEEECCCc------eEEccCCCeEEEEEcCCCCEEEEEC
Confidence                  35556  77655  455554321      1123556677777777777666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.85  E-value=5.1e-07  Score=72.68  Aligned_cols=159  Identities=12%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             ccccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEe
Q 046107           11 RFANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        11 ~~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      ..+.+++.+++ +++|++...                 .+.|+++|.+ +++....  .+..-+.||++.+++. +||++
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~-----------------~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~   87 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINK-----------------PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISD   87 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEET-----------------TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEE
T ss_pred             cCcceeEEeCCCCEEEEEECC-----------------CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEE
Confidence            35889999986 578886532                 5789999998 6554433  4567788999998874 88888


Q ss_pred             CCCCeEEEEEccCCCc-ccceEeeccCC-----CCCCceEECCCC-CEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           88 SWKFRCIKHWLKLGDK-RDREIFIENLP-----GGPDNINLAPDG-SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~-~~~~~~~~~~~-----~~p~~i~~d~dG-~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      -..++++.|+++.... .......-...     ....|+++|+++ ++|++.....                        
T Consensus        88 E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p------------------------  143 (255)
T 3qqz_A           88 ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP------------------------  143 (255)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS------------------------
T ss_pred             CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC------------------------
Confidence            7789999999864211 11111100011     134899999987 6999876651                        


Q ss_pred             HhhhhcCCCceEEEEEEC--CCCcEEEEEeCC---CCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVS--ANGSIIREFNDP---NAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~--~~G~~~~~~~~~---~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                 ..|++++  +.++.+..+.++   ....+..++.+..+  .++||+-+-.++.+..++.
T Consensus       144 -----------~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~  202 (255)
T 3qqz_A          144 -----------IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL  202 (255)
T ss_dssp             -----------EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             -----------ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC
Confidence                       4678887  233333333321   11123345666655  5889999999999998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.85  E-value=1.7e-07  Score=83.92  Aligned_cols=70  Identities=10%  Similarity=0.031  Sum_probs=54.7

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC--CCeEEEEecCccccceeEEe----cCCCEEE
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS--SKQVSIVLEGLYFANGVALS----KHGDFVV   84 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~g~~~~~~~~~~~pngia~~----~dg~~Ly   84 (224)
                      .|+++++.+||+ +|+++                  ..+.|..+|..  ++++..-......|.+++++    |||++||
T Consensus       198 ~p~~v~~SpDGr~lyv~~------------------~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~  259 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIG------------------RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI  259 (567)
T ss_dssp             CEEEEEECTTSCEEEEEE------------------TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred             CccceEECCCCCEEEEEc------------------CCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEE
Confidence            567899999985 77775                  24789999984  45544334445679999999    6999999


Q ss_pred             EEeCCCCeEEEEEcc
Q 046107           85 VCESWKFRCIKHWLK   99 (224)
Q Consensus        85 v~~~~~~~I~~~~~~   99 (224)
                      |++...+.|..+|..
T Consensus       260 v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          260 AGAYWPPQYVIMDGE  274 (567)
T ss_dssp             EEEEETTEEEEEETT
T ss_pred             EEEccCCeEEEEECC
Confidence            999999999998864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.83  E-value=1.3e-07  Score=77.06  Aligned_cols=99  Identities=22%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCc------cccceeEEecCCCEEE
Q 046107           12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL------YFANGVALSKHGDFVV   84 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~------~~pngia~~~dg~~Ly   84 (224)
                      .|.+++++++| .+|++...                 .+.|+.+|..+++........      ..|.+++++|||++||
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~   97 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNK-----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETT-----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CccceEEcCCCCEEEEEeCC-----------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEE
Confidence            37899999999 58888632                 578999998767655433322      2788999999999999


Q ss_pred             EEeC-----------CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEE
Q 046107           85 VCES-----------WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWIS  131 (224)
Q Consensus        85 v~~~-----------~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va  131 (224)
                      +++.           ..+.|+.+++++..  ....+  .....|.+++++++|+ +|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~--~~~~~~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           98 IYESPVRLELTHFEVQPTRVALYDAETLS--RRKAF--EAPRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEE--ECCSSCCCEEECTTSSCEEEE
T ss_pred             EEecccccccccccccCceEEEEECCCCc--EEEEE--eCCCCcceeEECCCCCEEEEe
Confidence            9962           35899999986522  11122  1244689999999998 7777

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.81  E-value=6.3e-07  Score=76.06  Aligned_cols=157  Identities=12%  Similarity=0.110  Sum_probs=106.3

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ..+++++.++|++|++..                 .++.|..+|.++++.... ......+++++++|+++.||++....
T Consensus       171 ~v~~~~~~~~~~~~~s~~-----------------~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  233 (433)
T 3bws_A          171 FVETISIPEHNELWVSQM-----------------QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWIS  233 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEG-----------------GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTT
T ss_pred             ceeEEEEcCCCEEEEEEC-----------------CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCC
Confidence            456678878888888863                 257899999876654433 33456789999999999999999888


Q ss_pred             CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           91 FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      +.|..+++.....  ...+  ...+.|.+++++++|+ +|++.......                           ....
T Consensus       234 ~~i~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~---------------------------~~~d  282 (433)
T 3bws_A          234 EDISVIDRKTKLE--IRKT--DKIGLPRGLLLSKDGKELYIAQFSASNQ---------------------------ESGG  282 (433)
T ss_dssp             TEEEEEETTTTEE--EEEC--CCCSEEEEEEECTTSSEEEEEEEESCTT---------------------------CSCC
T ss_pred             CcEEEEECCCCcE--EEEe--cCCCCceEEEEcCCCCEEEEEECCCCcc---------------------------ccCC
Confidence            9999999864211  1111  1234689999999996 66665543100                           0011


Q ss_pred             ceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        +.|..+|.. |+.+..+..+.     .+..++..  +..||+++...+.|.++++
T Consensus       283 --g~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          283 --GRLGIYSMDKEKLIDTIGPPG-----NKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             --EEEEEEETTTTEEEEEEEEEE-----CEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             --CeEEEEECCCCcEEeeccCCC-----CcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence              688899964 66666653322     23444443  4579999888999988876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.80  E-value=8.9e-07  Score=75.11  Aligned_cols=171  Identities=15%  Similarity=0.103  Sum_probs=110.0

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      .+.++++.++|+ +|++.....         . ....+|.|+.+|..+++..........+.+++++|+++.||++....
T Consensus       255 ~~~~~~~~~~g~~l~~~~~~~~---------~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  324 (433)
T 3bws_A          255 LPRGLLLSKDGKELYIAQFSAS---------N-QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCC  324 (433)
T ss_dssp             EEEEEEECTTSSEEEEEEEESC---------T-TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTT
T ss_pred             CceEEEEcCCCCEEEEEECCCC---------c-cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCC
Confidence            467888888884 555542100         0 00146789999987676554444445788999999999999999999


Q ss_pred             CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           91 FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      +.|..|++++...  ...+  .....+.+++++++|+ +|++....+.....++                    ......
T Consensus       325 ~~v~v~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~--------------------~~g~~d  380 (433)
T 3bws_A          325 SKIEVYDLKEKKV--QKSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYL--------------------KKGLVL  380 (433)
T ss_dssp             TEEEEEETTTTEE--EEEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTT--------------------SCCSSC
T ss_pred             CEEEEEECCCCcE--EEEe--cCCCCCCeEEEcCCCCEEEEEecCCCccccccc--------------------cccccc
Confidence            9999999874221  1222  1234688999999997 6666654321000000                    000111


Q ss_pred             ceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        +.|..+|. .++.+..+..  +.   .++.++..  +..|++++...+.|.++++
T Consensus       381 --g~v~~~d~~~~~~~~~~~~--~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          381 --GKVYVIDTTTDTVKEFWEA--GN---QPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             --CEEEEEETTTTEEEEEEEC--SS---SEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             --eEEEEEECCCCcEEEEecC--CC---CCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence              68899996 5787777754  21   35555543  5678888877899988876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.77  E-value=1.8e-07  Score=78.75  Aligned_cols=98  Identities=9%  Similarity=-0.045  Sum_probs=67.4

Q ss_pred             CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCe
Q 046107           22 GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES---------WKFR   92 (224)
Q Consensus        22 G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~---------~~~~   92 (224)
                      ..+|+++....            ...++.|+++|.+++++.........| +++++|||++||+++.         ..+.
T Consensus        16 ~~~yv~~~~~~------------~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~   82 (361)
T 2oiz_A           16 NRIYVMDSVFM------------HLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDV   82 (361)
T ss_dssp             GEEEEEECCGG------------GGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEE
T ss_pred             CEEEEECCCCC------------ccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCE
Confidence            37999985310            113578999998877766555556778 9999999999999984         2456


Q ss_pred             EEEEEccCCCcccceEeecc-----CCCCCCceEECCCCC-EEEEEec
Q 046107           93 CIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGS-FWISLIK  134 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~-l~va~~~  134 (224)
                      |..|++...+  ....+...     ....|.++++++||+ +|+++..
T Consensus        83 v~v~d~~t~~--~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~  128 (361)
T 2oiz_A           83 VEVWDADKLT--FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS  128 (361)
T ss_dssp             EEEEETTTCC--EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES
T ss_pred             EEEEECcCCc--EEEEEEcCccccccCCCcceEEECCCCCEEEEECCC
Confidence            9999886421  11111100     113699999999997 8888765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.76  E-value=9.3e-07  Score=75.03  Aligned_cols=147  Identities=14%  Similarity=0.085  Sum_probs=97.3

Q ss_pred             ccccceEEe-c-------CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--------------cC-
Q 046107           11 RFANDVIEA-S-------DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--------------EG-   67 (224)
Q Consensus        11 ~~~n~v~~~-~-------~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--------------~~-   67 (224)
                      .+.|++++| .       ++.+|+||..                 .+.|.++|..+++.-.+.              .+ 
T Consensus       152 S~l~di~VD~~~~~~~c~~~~aYItD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~  214 (381)
T 3q6k_A          152 TYFGGFAVDVANPKGDCSETFVYITNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGK  214 (381)
T ss_dssp             GGEEEEEEEESCTTTTSCSEEEEEEETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTE
T ss_pred             CccceEEEecccCCCCCCccEEEEEcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCE
Confidence            567899999 2       4579999964                 233445554433222111              11 


Q ss_pred             ----ccccceeEEecC----CCEEEEEeCCCCeEEEEEcc---CCCc-ccceEeeccCCCCCC--ceEEC-CCCCEEEEE
Q 046107           68 ----LYFANGVALSKH----GDFVVVCESWKFRCIKHWLK---LGDK-RDREIFIENLPGGPD--NINLA-PDGSFWISL  132 (224)
Q Consensus        68 ----~~~pngia~~~d----g~~Lyv~~~~~~~I~~~~~~---~~~~-~~~~~~~~~~~~~p~--~i~~d-~dG~l~va~  132 (224)
                          ..+..||+++|+    ++.||+....+.+++++..+   .... ...+.+.+ .....+  ++++| .+|++|++.
T Consensus       215 ~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~  293 (381)
T 3q6k_A          215 EYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAE  293 (381)
T ss_dssp             EEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEE
T ss_pred             EeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEe
Confidence                135679999998    89999999999999999853   2211 22333322 111234  56786 789999999


Q ss_pred             ecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-c-----EEEEEeCCCCCcccceeEEEEE-C
Q 046107          133 IKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-S-----IIREFNDPNAKNISFVTSALEF-Q  205 (224)
Q Consensus       133 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~-----~~~~~~~~~g~~~~~~t~~~~~-~  205 (224)
                      ...                                    .+|.+.++++ .     .....+++   .+.+++.+..+ +
T Consensus       294 ~~~------------------------------------~aI~~w~~~~~~~~~~n~~~l~~d~---~l~~pd~~~i~~~  334 (381)
T 3q6k_A          294 ANT------------------------------------KQVSCWNTQKMPLRMKNTDVVYTSS---RFVFGTDISVDSK  334 (381)
T ss_dssp             SSS------------------------------------SEEEEEETTSCSBCGGGEEEEEECT---TCCSEEEEEECTT
T ss_pred             ccC------------------------------------CeEEEEeCCCCccccCceEEEEECC---CccccCeEEECCC
Confidence            887                                    6899999988 3     34455665   36788888764 7


Q ss_pred             CEEEEEeCC
Q 046107          206 GNLYLASIN  214 (224)
Q Consensus       206 g~lyv~~~~  214 (224)
                      |+||+.+..
T Consensus       335 g~Lwv~sn~  343 (381)
T 3q6k_A          335 GGLWFMSNG  343 (381)
T ss_dssp             SCEEEEECS
T ss_pred             CeEEEEECc
Confidence            899998843

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.76  E-value=3.6e-07  Score=79.01  Aligned_cols=110  Identities=18%  Similarity=0.096  Sum_probs=75.1

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCc----cccceeEEecCCCEEEE
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL----YFANGVALSKHGDFVVV   85 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~----~~pngia~~~dg~~Lyv   85 (224)
                      ...|+.+.+.++| ||++.+...           .+...|.|+.+|.++.++.......    .++..+.++|+++.+|+
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~-----------~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvs  204 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNE-----------EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVS  204 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEET-----------TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEE
T ss_pred             CCcccceeECCCe-EEEEcCCCc-----------CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEE
Confidence            4578999999999 999875421           2345688999999877765544322    33455778999998888


Q ss_pred             EeC------------------CCCeEEEEEccCCCcccceEeecc-CCCCCCceEE--CCCCC-EEEEEe
Q 046107           86 CES------------------WKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINL--APDGS-FWISLI  133 (224)
Q Consensus        86 ~~~------------------~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~--d~dG~-l~va~~  133 (224)
                      ++.                  ..++|..|+++..+  ..+.+.-. ....|..+++  +++|+ .|++..
T Consensus       205 S~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e  272 (462)
T 2ece_A          205 SEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDPTKLMGFINMV  272 (462)
T ss_dssp             CBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred             ccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence            873                  37899999997531  11222111 1136788877  99987 788776

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.76  E-value=9.9e-07  Score=72.05  Aligned_cols=123  Identities=9%  Similarity=0.083  Sum_probs=75.5

Q ss_pred             CceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~d  125 (224)
                      .+.|++++++ ++.... .........++++++|. ||++.   +.|++++.++..     .+... .......+++|++
T Consensus       156 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---~~l~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~  225 (330)
T 3hxj_A          156 DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---DKVYAINPDGTE-----KWNFYAGYWTVTRPAISED  225 (330)
T ss_dssp             TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---SSEEEECTTSCE-----EEEECCSSCCCSCCEECTT
T ss_pred             CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---CEEEEECCCCcE-----EEEEccCCcceeceEECCC
Confidence            3678899987 554322 22334456788888886 99987   789999854421     22111 1235688999999


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-  204 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-  204 (224)
                      |++|++....                                     .+++++++|+....+..+.+.    .+..+.+ 
T Consensus       226 g~l~v~t~~~-------------------------------------gl~~~~~~g~~~~~~~~~~~~----~~~~~~~~  264 (330)
T 3hxj_A          226 GTIYVTSLDG-------------------------------------HLYAINPDGTEKWRFKTGKRI----ESSPVIGN  264 (330)
T ss_dssp             SCEEEEETTT-------------------------------------EEEEECTTSCEEEEEECSSCC----CSCCEECT
T ss_pred             CeEEEEcCCC-------------------------------------eEEEECCCCCEeEEeeCCCCc----cccceEcC
Confidence            9999987643                                     466777777766655443221    1222333 


Q ss_pred             CCEEEEEeCCCCeEEEee
Q 046107          205 QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~  222 (224)
                      +++||+++.. ..|.+++
T Consensus       265 ~g~l~v~t~~-ggl~~~d  281 (330)
T 3hxj_A          265 TDTIYFGSYD-GHLYAIN  281 (330)
T ss_dssp             TSCEEEECTT-CEEEEEC
T ss_pred             CCeEEEecCC-CCEEEEC
Confidence            6777777653 2455443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.74  E-value=6.4e-07  Score=73.20  Aligned_cols=119  Identities=11%  Similarity=0.139  Sum_probs=79.0

Q ss_pred             ceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           49 GQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                      +.|++++.+ ++.... .........++++++|. ||++.. .+.|++++.++...   ..+. .....+..++++++|+
T Consensus       195 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~~gl~~~~~~g~~~---~~~~-~~~~~~~~~~~~~~g~  267 (330)
T 3hxj_A          195 DKVYAINPD-GTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-DGHLYAINPDGTEK---WRFK-TGKRIESSPVIGNTDT  267 (330)
T ss_dssp             SSEEEECTT-SCEEEEECCSSCCCSCCEECTTSC-EEEEET-TTEEEEECTTSCEE---EEEE-CSSCCCSCCEECTTSC
T ss_pred             CEEEEECCC-CcEEEEEccCCcceeceEECCCCe-EEEEcC-CCeEEEECCCCCEe---EEee-CCCCccccceEcCCCe
Confidence            567788854 443322 22334567899999886 999875 56899997655221   1111 1223456788999999


Q ss_pred             EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-ECC
Q 046107          128 FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-FQG  206 (224)
Q Consensus       128 l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-~~g  206 (224)
                      +|++...                                     +.++++|++|+....+..+..    .+..++. .+|
T Consensus       268 l~v~t~~-------------------------------------ggl~~~d~~g~~~~~~~~~~~----~~~~~~~d~~g  306 (330)
T 3hxj_A          268 IYFGSYD-------------------------------------GHLYAINPDGTEKWNFETGSW----IIATPVIDENG  306 (330)
T ss_dssp             EEEECTT-------------------------------------CEEEEECTTSCEEEEEECSSC----CCSCCEECTTC
T ss_pred             EEEecCC-------------------------------------CCEEEECCCCcEEEEEEcCCc----cccceEEcCCC
Confidence            9998664                                     368999999998887765432    2334444 689


Q ss_pred             EEEEEeCCC
Q 046107          207 NLYLASINS  215 (224)
Q Consensus       207 ~lyv~~~~~  215 (224)
                      +||+++..+
T Consensus       307 ~l~~gt~~G  315 (330)
T 3hxj_A          307 TIYFGTRNG  315 (330)
T ss_dssp             CEEEECTTS
T ss_pred             EEEEEcCCC
Confidence            999998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.70  E-value=1.7e-06  Score=70.43  Aligned_cols=137  Identities=16%  Similarity=0.044  Sum_probs=86.2

Q ss_pred             CceEEEEeCCCCeEEEEecCcc---ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC----CCCCce
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLY---FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP----GGPDNI  120 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~---~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~----~~p~~i  120 (224)
                      .+.|..+|..+++.........   .|.+++++|||+.||++....+.|+.+++.+...  ...+....+    ..|.++
T Consensus        10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~   87 (337)
T 1pby_B           10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEEEECTTCE
T ss_pred             CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--EeeEEcCCcccccccccce
Confidence            6788899987776554443333   5899999999999999999889999999865321  111211111    168999


Q ss_pred             EECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC----ceEEEEEECCC-CcEEEEEeCCCCCc
Q 046107          121 NLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG----AAAKVVKVSAN-GSIIREFNDPNAKN  194 (224)
Q Consensus       121 ~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~-G~~~~~~~~~~g~~  194 (224)
                      +++++|+ +|++......                             .+.    ..+.|..+|.+ ++.+..+....   
T Consensus        88 ~~s~dg~~l~~~~~~~~~-----------------------------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---  135 (337)
T 1pby_B           88 ALSPDGKTLAIYESPVRL-----------------------------ELTHFEVQPTRVALYDAETLSRRKAFEAPR---  135 (337)
T ss_dssp             EECTTSSEEEEEEEEEEE-----------------------------CSSCEEECCCEEEEEETTTTEEEEEEECCS---
T ss_pred             EECCCCCEEEEEeccccc-----------------------------ccccccccCceEEEEECCCCcEEEEEeCCC---
Confidence            9999995 7777532100                             000    00578888865 56666665422   


Q ss_pred             ccceeEEEE--ECCEEEEEeCCCCeEEEeeC
Q 046107          195 ISFVTSALE--FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       195 ~~~~t~~~~--~~g~lyv~~~~~~~i~~~~~  223 (224)
                        .+..++.  ++..||++   ++.|.++++
T Consensus       136 --~~~~~~~s~dg~~l~~~---~~~i~~~d~  161 (337)
T 1pby_B          136 --QITMLAWARDGSKLYGL---GRDLHVMDP  161 (337)
T ss_dssp             --SCCCEEECTTSSCEEEE---SSSEEEEET
T ss_pred             --CcceeEECCCCCEEEEe---CCeEEEEEC
Confidence              1233333  34558887   466777664

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.70  E-value=4.9e-08  Score=86.36  Aligned_cols=77  Identities=17%  Similarity=0.198  Sum_probs=59.6

Q ss_pred             ccccccccceEEecCCcEEE-EeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC--ccccceeEEecCCCEE
Q 046107            7 CHLIRFANDVIEASDGSLYI-TVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG--LYFANGVALSKHGDFV   83 (224)
Q Consensus         7 ~~~~~~~n~v~~~~~G~ly~-t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~--~~~pngia~~~dg~~L   83 (224)
                      +.+|++|++|+++++|+||| ||..  ++...    ..+......||++++++|+++.+...  ...||||+++||++.|
T Consensus       472 ~~~fnsPDnL~fd~~G~LWf~TD~~--~~~~g----~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktL  545 (592)
T 4a9v_A          472 QNMFNSPDGLGFDKAGRLWILTDGD--SSNAG----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTL  545 (592)
T ss_dssp             TTCCCCEEEEEECTTCCEEEEECCC--CCCSG----GGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEE
T ss_pred             cCccCCCCceEECCCCCEEEEeCCC--cCccc----cccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEE
Confidence            45799999999999999999 8865  32211    11223455899999988999888754  4678999999999999


Q ss_pred             EEEeCC
Q 046107           84 VVCESW   89 (224)
Q Consensus        84 yv~~~~   89 (224)
                      ||+-..
T Consensus       546 fV~vQH  551 (592)
T 4a9v_A          546 FVGIQH  551 (592)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            999643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.67  E-value=1.4e-07  Score=82.28  Aligned_cols=110  Identities=19%  Similarity=0.208  Sum_probs=74.3

Q ss_pred             ccccccceEEecCCc--EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeE-EE-------EecC-----ccccce
Q 046107            9 LIRFANDVIEASDGS--LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV-SI-------VLEG-----LYFANG   73 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~--ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~-~~-------~~~~-----~~~png   73 (224)
                      .|..|.+|++.+||.  |||++.                  .|+|+++++++... +.       +.++     ...+-|
T Consensus        12 gL~~P~~~a~~pdG~~rl~V~er------------------~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllg   73 (463)
T 2wg3_C           12 GLRQPVGALHSGDGSQRLFILEK------------------EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLS   73 (463)
T ss_dssp             EESSEEEEECCSSSSCCEEEEET------------------TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEE
T ss_pred             CCCCceEEEECCCCCeEEEEEeC------------------CceEEEEeCCCCeeeeeecCCcceeccCccccCCCccee
Confidence            478999999999985  999972                  47899998753211 11       1111     345678


Q ss_pred             eEEecC---CCEEEEEeCCC------------CeEEEEEccCC---C--cccceEeeccCC----CCCCceEECCCCCEE
Q 046107           74 VALSKH---GDFVVVCESWK------------FRCIKHWLKLG---D--KRDREIFIENLP----GGPDNINLAPDGSFW  129 (224)
Q Consensus        74 ia~~~d---g~~Lyv~~~~~------------~~I~~~~~~~~---~--~~~~~~~~~~~~----~~p~~i~~d~dG~l~  129 (224)
                      ||++|+   .++|||+.+..            .+|.|+..+..   .  ..+.+++++..+    .....|++++||.||
T Consensus        74 ia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LY  153 (463)
T 2wg3_C           74 LAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLY  153 (463)
T ss_dssp             EEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEE
T ss_pred             eEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEE
Confidence            999996   34699987521            48999998631   1  233455554321    134679999999999


Q ss_pred             EEEecCC
Q 046107          130 ISLIKMN  136 (224)
Q Consensus       130 va~~~~~  136 (224)
                      ++.+...
T Consensus       154 v~~Gd~~  160 (463)
T 2wg3_C          154 IILGDGM  160 (463)
T ss_dssp             EEECCTT
T ss_pred             EEeCCCC
Confidence            9998874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=1.7e-06  Score=79.83  Aligned_cols=149  Identities=15%  Similarity=0.146  Sum_probs=98.5

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG---LYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~---~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ....+..+++|+||+...                  .+.|+++++++++.+.....   ......|+.+++|+ ||++..
T Consensus       408 ~v~~i~~d~~g~lWigt~------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~  468 (781)
T 3v9f_A          408 SVLCSLKDSEGNLWFGTY------------------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH  468 (781)
T ss_dssp             BEEEEEECTTSCEEEEET------------------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET
T ss_pred             ceEEEEECCCCCEEEEec------------------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC
Confidence            345677778889999852                  25699999887776655321   23445788888875 999976


Q ss_pred             CCCeEEEEEccCCCcccceEeeccC-----CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENL-----PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~-----~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                        +.|+++++++...   ..+....     ......++.|++|++|++....                            
T Consensus       469 --~Gl~~~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~----------------------------  515 (781)
T 3v9f_A          469 --AGVFVIDLASKKV---IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG----------------------------  515 (781)
T ss_dssp             --TEEEEEESSSSSC---CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS----------------------------
T ss_pred             --CceEEEeCCCCeE---EecccCcccccccceeEEEEEcCCCCEEEEEcCC----------------------------
Confidence              6799999865322   2222111     1345788999999999998754                            


Q ss_pred             hhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEee
Q 046107          164 MSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~  222 (224)
                               .+++++++++....+..+.+..-..+..+..+ +|+||+++. ..-|.+++
T Consensus       516 ---------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          516 ---------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             ---------CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             ---------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence                     37889998776666654444322345566654 799999987 33225543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.61  E-value=2.3e-07  Score=82.65  Aligned_cols=124  Identities=10%  Similarity=0.025  Sum_probs=80.8

Q ss_pred             cccceEEecCC-cEEEEeCCCCCC---------cchhh--------hhhc-cC--CCCceEEEEeCCC--CeE-EEEecC
Q 046107           12 FANDVIEASDG-SLYITVSSTKFA---------PKAYY--------LDLV-EG--EPHGQLLRYDPSS--KQV-SIVLEG   67 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~---------~~~~~--------~~~~-~~--~~~g~l~~~~~~~--g~~-~~~~~~   67 (224)
                      .|.++++++|| .+|+|...++-.         ...+.        .... .+  ...+.|..+|..+  ++. .....-
T Consensus       196 ~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv  275 (595)
T 1fwx_A          196 NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI  275 (595)
T ss_dssp             CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE
T ss_pred             CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec
Confidence            57899999998 577776432110         00000        0000 00  0124588899875  333 333445


Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEccCC------Cccc-ceEeeccC-CCCCCceEECCCCCEEEEEecC
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLG------DKRD-REIFIENL-PGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~------~~~~-~~~~~~~~-~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...|+|+.++|||+++||++...+.|..|+.+..      ++.. ..+..+.. ...|.++++++||++|++.+-.
T Consensus       276 g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld  351 (595)
T 1fwx_A          276 ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD  351 (595)
T ss_dssp             ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT
T ss_pred             CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC
Confidence            6799999999999999999999999999998631      1111 12222222 2479999999999999998877

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.61  E-value=5.2e-07  Score=76.49  Aligned_cols=78  Identities=10%  Similarity=0.002  Sum_probs=54.7

Q ss_pred             cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-C-------ccccceeEEecCCCE
Q 046107           12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-G-------LYFANGVALSKHGDF   82 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~-------~~~pngia~~~dg~~   82 (224)
                      .| ++++.+|| .+|+++..  +..      ...+...+.|..+|+.++++..... +       ...|.+++++|||++
T Consensus        67 ~P-~i~~spDg~~lyVan~~--~~r------~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~  137 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTS--FAR------SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEE--ETT------TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             CC-ceEECCCCCEEEEEccc--ccc------cccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence            47 89999998 69999842  000      0011235789999998776543332 1       257999999999999


Q ss_pred             EEEEeCC-CCeEEE--EEc
Q 046107           83 VVVCESW-KFRCIK--HWL   98 (224)
Q Consensus        83 Lyv~~~~-~~~I~~--~~~   98 (224)
                      |||++.. .+.|..  +|+
T Consensus       138 lyVan~~~~~~v~V~~iD~  156 (368)
T 1mda_H          138 LLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             EEEEECSSSCEEEEEETTT
T ss_pred             EEEEccCCCCeEEEEEEch
Confidence            9999865 567777  665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=7.1e-07  Score=82.37  Aligned_cols=149  Identities=14%  Similarity=0.069  Sum_probs=96.8

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC------ccccceeEEecCCCEEE
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG------LYFANGVALSKHGDFVV   84 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~------~~~pngia~~~dg~~Ly   84 (224)
                      .....+..+++|+||++..                   +.|+++++++++.+.....      ....+.|+.+++|+ ||
T Consensus       450 ~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW  509 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGTH-------------------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FW  509 (781)
T ss_dssp             CCEEEEEECTTSEEEEEET-------------------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EE
T ss_pred             CeEEEEEECCCCCEEEEEC-------------------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EE
Confidence            3455677788899999851                   3589999876665544321      23456889999987 99


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEeec--cCC-CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHH
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFIE--NLP-GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELIN  161 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~-~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  161 (224)
                      ++... +.|+++++++.   ..+.+..  .++ .....+..|++|++|++.. .                          
T Consensus       510 igt~~-~Gl~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~--------------------------  558 (781)
T 3v9f_A          510 IGTFG-GGVGIYTPDMQ---LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-E--------------------------  558 (781)
T ss_dssp             EEESS-SCEEEECTTCC---EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-T--------------------------
T ss_pred             EEEcC-CCEEEEeCCCC---eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-C--------------------------
Confidence            99753 45889988642   2223321  111 2345788899999999976 4                          


Q ss_pred             hhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEee
Q 046107          162 QLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       162 ~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~  222 (224)
                                +.|.+++++.+....+...+|..-..+..++.+ +|+||+++..  -|.+++
T Consensus       559 ----------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~--Gl~~~~  608 (781)
T 3v9f_A          559 ----------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNT--GISCYI  608 (781)
T ss_dssp             ----------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSS--CEEEEE
T ss_pred             ----------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCC--ceEEEE
Confidence                      556899987655566654444322234455554 7999999853  366654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.57  E-value=9.6e-07  Score=76.92  Aligned_cols=72  Identities=11%  Similarity=0.087  Sum_probs=53.9

Q ss_pred             CeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc--------CCCCCCceEECC----CC
Q 046107           59 KQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN--------LPGGPDNINLAP----DG  126 (224)
Q Consensus        59 g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--------~~~~p~~i~~d~----dG  126 (224)
                      =+++.+++++..|.+|++.|||+ |||++...++|++++..++.   .+.+.+.        ..+.+.||++++    +|
T Consensus        17 f~~~~~a~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~---~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g   92 (454)
T 1cru_A           17 FDKKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGS---VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (454)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCC---EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             eEEEEEECCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCc---EeEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence            35677888999999999999997 99999887899999875322   2222211        012455999999    68


Q ss_pred             CEEEEEec
Q 046107          127 SFWISLIK  134 (224)
Q Consensus       127 ~l~va~~~  134 (224)
                      .||++...
T Consensus        93 ~lYv~~s~  100 (454)
T 1cru_A           93 YIYISGTF  100 (454)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            89999875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.55  E-value=2.9e-06  Score=73.36  Aligned_cols=123  Identities=13%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             cccccceEEecCCcEEEEeCCCCCC-cchhh----hhhccCCCCceEEEEeCCCCeEEEEecC---ccccceeEE--ecC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFA-PKAYY----LDLVEGEPHGQLLRYDPSSKQVSIVLEG---LYFANGVAL--SKH   79 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~-~~~~~----~~~~~~~~~g~l~~~~~~~g~~~~~~~~---~~~pngia~--~~d   79 (224)
                      ..++.|+.+.++++++++..   |+ .+.+.    .+.++.....+|..+|.+++++....+-   ...|.+|++  +||
T Consensus       187 ~~~~Yd~~~~p~~~~mvsS~---wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pd  263 (462)
T 2ece_A          187 QYLAYDFWWNLPNEVLVSSE---WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPT  263 (462)
T ss_dssp             CCCCCCEEEETTTTEEEECB---CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTT
T ss_pred             ccccceEEECCCCCEEEEcc---CcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCC
Confidence            34556788888887666642   32 11111    1111113456899999876655443322   357888877  999


Q ss_pred             CCEEEEEeC-----CCCeEEEEEccCCCcccceEe--ec-----cC----------CCCCCceEECCCCC-EEEEEecC
Q 046107           80 GDFVVVCES-----WKFRCIKHWLKLGDKRDREIF--IE-----NL----------PGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        80 g~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~--~~-----~~----------~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      |+++||+..     .++.|+++..+++.....+++  ..     ..          +..|.+|.+++||+ ||+++...
T Consensus       264 g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~  342 (462)
T 2ece_A          264 KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI  342 (462)
T ss_dssp             CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred             CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence            999999998     899998877654322222221  00     00          24689999999997 99998887

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.53  E-value=3.8e-06  Score=77.67  Aligned_cols=145  Identities=15%  Similarity=0.162  Sum_probs=95.2

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-----c--cccceeEEecCCCEEE
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-----L--YFANGVALSKHGDFVV   84 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-----~--~~pngia~~~dg~~Ly   84 (224)
                      ....+..+++|+||++..                   +.|+++++++++.+.....     +  .....|+.+++|+ ||
T Consensus       453 ~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW  512 (795)
T 4a2l_A          453 NVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR-LW  512 (795)
T ss_dssp             CEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC-EE
T ss_pred             eeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC-EE
Confidence            445677778888888851                   3488999887776654321     1  2345788899987 99


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEee---c--cCC-CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFI---E--NLP-GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~---~--~~~-~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                      ++..  +.|+++++++...    .+.   .  ..+ .....+..|++|++|++...+                       
T Consensus       513 igt~--~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~G-----------------------  563 (795)
T 4a2l_A          513 IGGE--EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTREG-----------------------  563 (795)
T ss_dssp             EEES--SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSC-----------------------
T ss_pred             EEeC--CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCC-----------------------
Confidence            9986  5799999865322    121   0  111 234678889999999987643                       


Q ss_pred             hHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEee
Q 046107          159 LINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~  222 (224)
                                     +.+++++.+....+...+|..-..+..++.+ +|+||+++.  +-|.+++
T Consensus       564 ---------------l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~  611 (795)
T 4a2l_A          564 ---------------FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGISCFN  611 (795)
T ss_dssp             ---------------EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEEEEE
T ss_pred             ---------------ceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceEEEc
Confidence                           6788887666566644444322235555555 699999993  5566654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.49  E-value=1.7e-05  Score=66.51  Aligned_cols=132  Identities=16%  Similarity=0.188  Sum_probs=87.9

Q ss_pred             eEEEEeCCCCeEEEEe-------cCccccceeEE--ecC-CC-EEEEEeCCCCeEEEEEccC---CCccc--ceEeeccC
Q 046107           50 QLLRYDPSSKQVSIVL-------EGLYFANGVAL--SKH-GD-FVVVCESWKFRCIKHWLKL---GDKRD--REIFIENL  113 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~-------~~~~~pngia~--~~d-g~-~Lyv~~~~~~~I~~~~~~~---~~~~~--~~~~~~~~  113 (224)
                      .+|.+|+++++++.+.       +.+..|.|+|+  +++ ++ ++||++.. +++..|.+..   +....  .+.|  ..
T Consensus       102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f--~l  178 (355)
T 3amr_A          102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAF--KM  178 (355)
T ss_dssp             EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEE--EC
T ss_pred             EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEe--cC
Confidence            5677788777776652       34588999999  774 43 57888865 7888888742   11111  1222  25


Q ss_pred             CCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC--C----cEEEE
Q 046107          114 PGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--G----SIIRE  186 (224)
Q Consensus       114 ~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G----~~~~~  186 (224)
                      ++.|.|+++|++ |.||++....                                    + |++++++  +    +++..
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd~------------------------------------G-Iw~~da~p~~~~~~~~v~~  221 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEEDE------------------------------------A-IWKFSAEPDGGSNGTVIDR  221 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTT------------------------------------E-EEEEECSTTSCSCCEEEEE
T ss_pred             CCCcceEEEcCCCCeEEEecccc------------------------------------e-EEEEeCCcCCCCCceEEEE
Confidence            678999999975 8899998886                                    5 9999954  3    34433


Q ss_pred             EeCCCCCcccceeEEEEE-C----CEEEEEeCCCCeEEEeeC
Q 046107          187 FNDPNAKNISFVTSALEF-Q----GNLYLASINSNFIGKLPL  223 (224)
Q Consensus       187 ~~~~~g~~~~~~t~~~~~-~----g~lyv~~~~~~~i~~~~~  223 (224)
                      +.  .+.....+..++.. .    +.|++++-+++...+|+.
T Consensus       222 ~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          222 AD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             BS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             ec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            32  23222245555442 2    579999999999999876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.46  E-value=2.8e-05  Score=63.90  Aligned_cols=134  Identities=13%  Similarity=0.046  Sum_probs=88.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCcc-ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLY-FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~-~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+|.|..+|..+++......+.. ..+.++++||++ ++++-+..+.|..+++....  ....+. .-......+++.++
T Consensus       184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHAN--LAGTLS-GHASWVLNVAFCPD  259 (321)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTT
T ss_pred             CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcc--eeEEEc-CCCCceEEEEECCC
Confidence            36778888887666544444433 457999999998 55666677889999986422  112222 22234578999999


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      |.++++....                                    +.|...|. .++.+..+....+    .+..+...
T Consensus       260 ~~~l~s~s~D------------------------------------~~v~iwd~~~~~~~~~~~~h~~----~v~~v~~s  299 (321)
T 3ow8_A          260 DTHFVSSSSD------------------------------------KSVKVWDVGTRTCVHTFFDHQD----QVWGVKYN  299 (321)
T ss_dssp             SSEEEEEETT------------------------------------SCEEEEETTTTEEEEEECCCSS----CEEEEEEC
T ss_pred             CCEEEEEeCC------------------------------------CcEEEEeCCCCEEEEEEcCCCC----cEEEEEEC
Confidence            9988877665                                    45566664 4777777754433    35666654


Q ss_pred             -CCEEEEEeCCCCeEEEeeCC
Q 046107          205 -QGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       205 -~g~lyv~~~~~~~i~~~~~~  224 (224)
                       +++..++......|.+.++|
T Consensus       300 ~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          300 GNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEeCC
Confidence             56666777777888887765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.45  E-value=4.9e-06  Score=68.58  Aligned_cols=124  Identities=15%  Similarity=0.102  Sum_probs=84.1

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      ...|++++.+++..+.+..+   +..+++.|++++||+++.. ..+|++.+++|.   ..+++.+.  ..|   .++++|
T Consensus       166 ~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~---~~~~Lt~~--~~~---~~~~~g  234 (302)
T 3s25_A          166 NGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNP---NPVVLTEA--NIE---HYNVYG  234 (302)
T ss_dssp             TCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSC---CCEECSCS--CEE---EEEEET
T ss_pred             CceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCC---CeEEEeCC--Ccc---eEEECC
Confidence            45799999886666655432   3335677999999999864 368999999873   34444321  122   356665


Q ss_pred             C-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEEC
Q 046107          127 S-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQ  205 (224)
Q Consensus       127 ~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~  205 (224)
                      . ||.+.....                                   ..+.+++.||.-.+.+..  +.    ...+...+
T Consensus       235 ~~Iy~~~~~~~-----------------------------------~~i~~~~~DG~~r~~l~~--~~----~~~i~i~~  273 (302)
T 3s25_A          235 SLIFYQRGGDN-----------------------------------PALCVVKNDGTGFKELAK--GE----FCNINVTS  273 (302)
T ss_dssp             TEEEEEECSSS-----------------------------------CEEEEEETTSCCCEEEEE--SC----EEEEEECS
T ss_pred             CEEEEEECCCC-----------------------------------cEEEEEECCCCccEEeeC--Cc----cceEEEeC
Confidence            4 666533321                                   578999999977666643  22    23556789


Q ss_pred             CEEEEEeCCCCeEEEeeC
Q 046107          206 GNLYLASINSNFIGKLPL  223 (224)
Q Consensus       206 g~lyv~~~~~~~i~~~~~  223 (224)
                      +.||.+.+....|.++++
T Consensus       274 d~Iy~td~~~~~i~~~~~  291 (302)
T 3s25_A          274 QYVYFTDFVSNKEYCTST  291 (302)
T ss_dssp             SEEEEEETTTCCEEEEES
T ss_pred             CEEEEEECCCCeEEEEEC
Confidence            999999999888988865

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.42  E-value=2.4e-06  Score=71.83  Aligned_cols=100  Identities=11%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             eEEecCC-cEEEEeC-CCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeE
Q 046107           16 VIEASDG-SLYITVS-STKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRC   93 (224)
Q Consensus        16 v~~~~~G-~ly~t~~-~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I   93 (224)
                      +++++|| ++|++.. ....+.        ...+.+.|+.+|.+++++........ |++|+++|||++||+++.  +.|
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~--------~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v  327 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGT--------HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNV  327 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTC--------TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCE
T ss_pred             EEEecCCCeEEEEEccCCCccc--------ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeE
Confidence            7888885 7888853 100000        01134689999998777654444444 999999999999999985  899


Q ss_pred             EEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           94 IKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                      ..|+.+...+.....+. .....|.+++++|+|+
T Consensus       328 ~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          328 NVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred             EEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence            99998653111122211 2345899999999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.40  E-value=4.1e-06  Score=74.35  Aligned_cols=105  Identities=15%  Similarity=0.059  Sum_probs=68.5

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-Ce
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK-FR   92 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~-~~   92 (224)
                      ++++++|||+..++-+.             .......|+.+|.++++.+.+.......+.++|+|||++|+.++..+ ..
T Consensus       153 ~~~~~spDG~~la~~~~-------------~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  219 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGF-------------FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR  219 (582)
T ss_dssp             CEEEEEEETTEEEEEEE-------------EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE
T ss_pred             ceEEECCCCCEEEEEEE-------------cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE
Confidence            57788888864443211             01123569999987777776655555568999999999888555432 38


Q ss_pred             EEEEEccCCCcccceEeeccCCCCCCceE--------ECCCCCEEEEEecC
Q 046107           93 CIKHWLKLGDKRDREIFIENLPGGPDNIN--------LAPDGSFWISLIKM  135 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~~~~~p~~i~--------~d~dG~l~va~~~~  135 (224)
                      |++++++++.   .. ........+.+++        +++||.+|++....
T Consensus       220 i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          220 LVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             EEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             EEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence            9999987632   23 2222222344556        99999888877665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.39  E-value=2.3e-05  Score=66.92  Aligned_cols=102  Identities=16%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK-   90 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~-   90 (224)
                      ...+++.|||+ |+++...               .....|+.+|.++++...+.........++|+|||++|+++.... 
T Consensus       225 ~~~~~~spdg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g  289 (415)
T 2hqs_A          225 NGAPAFSPDGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG  289 (415)
T ss_dssp             EEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             ccCEEEcCCCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCC
Confidence            45677888885 5555421               134569999988777765554445567899999999887776433 


Q ss_pred             -CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEe
Q 046107           91 -FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLI  133 (224)
Q Consensus        91 -~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~  133 (224)
                       .+|+.++++++.   ...+. ........+++++||+..+...
T Consensus       290 ~~~i~~~d~~~~~---~~~l~-~~~~~~~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          290 RPQVYKVNINGGA---PQRIT-WEGSQNQDADVSSDGKFMVMVS  329 (415)
T ss_dssp             SCEEEEEETTSSC---CEECC-CSSSEEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEECCCCC---EEEEe-cCCCcccCeEECCCCCEEEEEE
Confidence             389999987532   22222 1223456789999998554433

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.35  E-value=3.6e-05  Score=67.14  Aligned_cols=123  Identities=17%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhh-ccCCCCceEEEEeCCCC--------------------eEEEEecCc
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDL-VEGEPHGQLLRYDPSSK--------------------QVSIVLEGL   68 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~-~~~~~~g~l~~~~~~~g--------------------~~~~~~~~~   68 (224)
                      ...-..|++++||.||++.-... ......... -.....|.|+|+++++.                    ..+++..++
T Consensus       138 ~H~g~~l~fgpDG~LYv~~Gd~~-~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~  216 (463)
T 2wg3_C          138 KHLGGQLLFGPDGFLYIILGDGM-ITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL  216 (463)
T ss_dssp             SSCEEEEEECTTSCEEEEECCTT-CCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC
T ss_pred             cccCCcEeECCCCcEEEEeCCCC-CCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC
Confidence            34567899999999999954311 100000000 01245799999999842                    245678899


Q ss_pred             cccceeEEecC-----CC-EEEEEeCC-----CCeEEEEEccCCCcccceEeeccCC---CCCCceEECC-------CCC
Q 046107           69 YFANGVALSKH-----GD-FVVVCESW-----KFRCIKHWLKLGDKRDREIFIENLP---GGPDNINLAP-------DGS  127 (224)
Q Consensus        69 ~~pngia~~~d-----g~-~Lyv~~~~-----~~~I~~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~-------dG~  127 (224)
                      ..|.|++|+|+     |+ ++|++|..     ..+|..+.. |...+....+....+   ..|.|+++-.       .|.
T Consensus       217 RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~  295 (463)
T 2wg3_C          217 HDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS  295 (463)
T ss_dssp             SSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTC
T ss_pred             CCcceEEECCCCCCcccceEEEecccCCCCCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcce
Confidence            99999999997     33 57888852     234554432 222221111111111   2567777742       356


Q ss_pred             EEEEEec
Q 046107          128 FWISLIK  134 (224)
Q Consensus       128 l~va~~~  134 (224)
                      +++++..
T Consensus       296 ~f~~~~~  302 (463)
T 2wg3_C          296 YVFGDRN  302 (463)
T ss_dssp             EEEEETT
T ss_pred             EEEecCC
Confidence            7777765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.35  E-value=2.8e-05  Score=61.43  Aligned_cols=102  Identities=15%  Similarity=0.110  Sum_probs=62.2

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ..++++++.++|+.+++-..             .......||.++.++++...+. .....+.++++|||+.|+++....
T Consensus        85 ~~~~~~~~spdg~~l~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~  150 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDK-------------VEFGKSAIYLLPSTGGTPRLMT-KNLPSYWHGWSPDGKSFTYCGIRD  150 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEEC-------------TTTSSCEEEEEETTCCCCEECC-SSSSEEEEEECTTSSEEEEEEEET
T ss_pred             ccccceEECCCCCEEEEEEe-------------CCCCcceEEEEECCCCceEEee-cCCCccceEECCCCCEEEEEECCC
Confidence            44567888888864443221             0113568999998756554443 233467889999999888666555


Q ss_pred             C--eEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEE
Q 046107           91 F--RCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI  130 (224)
Q Consensus        91 ~--~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~v  130 (224)
                      +  +|+.++.++.   ....+. .....+..++++++|+..+
T Consensus       151 ~~~~l~~~~~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~  188 (297)
T 2ojh_A          151 QVFDIYSMDIDSG---VETRLT-HGEGRNDGPDYSPDGRWIY  188 (297)
T ss_dssp             TEEEEEEEETTTC---CEEECC-CSSSCEEEEEECTTSSEEE
T ss_pred             CceEEEEEECCCC---cceEcc-cCCCccccceECCCCCEEE
Confidence            5  5666655442   222222 2234567899999998444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.34  E-value=4.7e-05  Score=66.86  Aligned_cols=130  Identities=11%  Similarity=0.047  Sum_probs=79.4

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                      ++.|..++.++.....+........+++++||+++|. +....+.|..++.++..   ...+. ........+++.++|+
T Consensus       406 d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~d~~v~~w~~~~~~---~~~~~-~~~~~v~~~~~spd~~  480 (577)
T 2ymu_A          406 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIA-SASDDKTVKLWNRNGQL---LQTLT-GHSSSVRGVAFSPDGQ  480 (577)
T ss_dssp             TSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTSCE---EEEEE-CCSSCEEEEEECTTSC
T ss_pred             CCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEE-EEcCCCEEEEEECCCCE---EEEEc-CCCCCEEEEEEcCCCC
Confidence            5667777765333333333344557899999998554 44567889989876521   22222 2233567899999999


Q ss_pred             EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CC
Q 046107          128 FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QG  206 (224)
Q Consensus       128 l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g  206 (224)
                      +.++....                                    +.|...+.+|+.+..+....+    .++.++.. ++
T Consensus       481 ~las~~~d------------------------------------~~i~iw~~~~~~~~~~~~h~~----~v~~l~~s~dg  520 (577)
T 2ymu_A          481 TIASASDD------------------------------------KTVKLWNRNGQLLQTLTGHSS----SVRGVAFSPDG  520 (577)
T ss_dssp             EEEEEETT------------------------------------SEEEEEETTSCEEEEEECCSS----CEEEEEECTTS
T ss_pred             EEEEEeCC------------------------------------CEEEEEcCCCCEEEEEeCCCC----CEEEEEEcCCC
Confidence            88877665                                    456667777877777755433    35555543 44


Q ss_pred             EEEEEeCCCCeEEEee
Q 046107          207 NLYLASINSNFIGKLP  222 (224)
Q Consensus       207 ~lyv~~~~~~~i~~~~  222 (224)
                      ++.++......|..++
T Consensus       521 ~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          521 QTIASASDDKTVKLWN  536 (577)
T ss_dssp             SCEEEEETTSEEEEEC
T ss_pred             CEEEEEECcCEEEEEe
Confidence            4444444445555444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.33  E-value=1.5e-05  Score=71.06  Aligned_cols=171  Identities=9%  Similarity=0.021  Sum_probs=98.8

Q ss_pred             ccccceEEe--cCC-cEEEEeCCCC-CCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEE
Q 046107           11 RFANDVIEA--SDG-SLYITVSSTK-FAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        11 ~~~n~v~~~--~~G-~ly~t~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ..|+++++.  +++ .+|++..... ....+...+. ...-.+.+..+|.++.++.....-...|.+++++|||+++|++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~-~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt  212 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED-VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFST  212 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC-GGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCccccc-ccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEE
Confidence            568899984  666 6777753211 0000011111 1234678999999876655433222379999999999999999


Q ss_pred             eCCC--------------CeEEEEEcc--------CCC--cccc----------eEee-c-cCCCCCCceEECCCCC-EE
Q 046107           87 ESWK--------------FRCIKHWLK--------LGD--KRDR----------EIFI-E-NLPGGPDNINLAPDGS-FW  129 (224)
Q Consensus        87 ~~~~--------------~~I~~~~~~--------~~~--~~~~----------~~~~-~-~~~~~p~~i~~d~dG~-l~  129 (224)
                      +..+              ..|..++..        |..  .+..          +++. . ..+..|.|+.++|||+ +|
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEE
T ss_pred             ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEE
Confidence            9776              334444421        110  0000          1100 0 1234799999999998 66


Q ss_pred             EEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-------------CcEEEEEeCCCCCccc
Q 046107          130 ISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-------------GSIIREFNDPNAKNIS  196 (224)
Q Consensus       130 va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------G~~~~~~~~~~g~~~~  196 (224)
                      +++...                                    ..|..+|-+             .++...+  +.|.   
T Consensus       293 V~~~~s------------------------------------~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~---  331 (595)
T 1fwx_A          293 VAGKLS------------------------------------PTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGL---  331 (595)
T ss_dssp             EECTTS------------------------------------SBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCS---
T ss_pred             EeCCCC------------------------------------CeEEEEECcccccccccccCcccceEEEc--CCCC---
Confidence            666555                                    234444422             2233333  3343   


Q ss_pred             ceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          197 FVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       197 ~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      .+-..+++ +|++|++.+.++.|.++++
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEh
Confidence            23343433 5699999999999999874

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.32  E-value=1.8e-05  Score=65.14  Aligned_cols=124  Identities=7%  Similarity=0.029  Sum_probs=84.0

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-C
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-G  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G  126 (224)
                      ...|++++.++...+.+.....    ++++++++.||+++....+|++.+++|.   ..+.+...    +..+.+.|+ +
T Consensus       128 ~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~---~~~~l~~~----~~~~~~~P~g~  196 (302)
T 3s25_A          128 ATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ---SEALFYDC----NCYKPVVLDDT  196 (302)
T ss_dssp             CEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT---EEEEEECS----CEEEEEEEETT
T ss_pred             CceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC---CEEEEeCC----CccceeeecCC
Confidence            5679999998655565554422    5678899999999988889999999873   23333322    223445555 4


Q ss_pred             CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECC
Q 046107          127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQG  206 (224)
Q Consensus       127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g  206 (224)
                      .||.++....                                   ..|.+.+.+|.-...+..  .. +   ..+.+.++
T Consensus       197 ~iy~t~~~~~-----------------------------------~~I~~~~ldG~~~~~Lt~--~~-~---~~~~~~g~  235 (302)
T 3s25_A          197 NVYYMDVNRD-----------------------------------NAIVHVNINNPNPVVLTE--AN-I---EHYNVYGS  235 (302)
T ss_dssp             EEEEEEGGGT-----------------------------------TEEEEECSSSCCCEECSC--SC-E---EEEEEETT
T ss_pred             EEEEEEcCCC-----------------------------------cEEEEEECCCCCeEEEeC--CC-c---ceEEECCC
Confidence            5777776541                                   479999999987777643  21 2   23567789


Q ss_pred             EEEEE-eCCCCeEEEeeC
Q 046107          207 NLYLA-SINSNFIGKLPL  223 (224)
Q Consensus       207 ~lyv~-~~~~~~i~~~~~  223 (224)
                      +||.+ ....+.|.++++
T Consensus       236 ~Iy~~~~~~~~~i~~~~~  253 (302)
T 3s25_A          236 LIFYQRGGDNPALCVVKN  253 (302)
T ss_dssp             EEEEEECSSSCEEEEEET
T ss_pred             EEEEEECCCCcEEEEEEC
Confidence            99987 444678887765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.32  E-value=0.00012  Score=62.08  Aligned_cols=123  Identities=11%  Similarity=0.030  Sum_probs=79.5

Q ss_pred             ccccccccceEEecCCcEEEEeCCCCCCcchhhhhhc--cCCCCceEEEEeCCCC--eEEEEe---c----CccccceeE
Q 046107            7 CHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLV--EGEPHGQLLRYDPSSK--QVSIVL---E----GLYFANGVA   75 (224)
Q Consensus         7 ~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~--~~~~~g~l~~~~~~~g--~~~~~~---~----~~~~pngia   75 (224)
                      +..|.+..++.+|++|+|||-|+... .   ......  ......+|+.+|..++  ++-...   .    ...+.+.|+
T Consensus        83 ~~~lvsV~~v~iD~~~rLWVLDtG~~-~---~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~  158 (381)
T 3q6k_A           83 GKELTSIYQPVIDDCRRLWVVDIGSV-E---YRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFA  158 (381)
T ss_dssp             SCSSSCEEEEEECTTCEEEEEECSSC-S---SCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEE
T ss_pred             ccceEEeeEEEEcCCCcEEEEeCCCc-C---cCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEE
Confidence            45688999999999999999997631 1   000000  0134568999999877  544221   1    234567899


Q ss_pred             Ee---cC----CCEEEEEeCCCCeEEEEEccCCCcccceEe-------------ecc----CCCCCCceEECCC----C-
Q 046107           76 LS---KH----GDFVVVCESWKFRCIKHWLKLGDKRDREIF-------------IEN----LPGGPDNINLAPD----G-  126 (224)
Q Consensus        76 ~~---~d----g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~-------------~~~----~~~~p~~i~~d~d----G-  126 (224)
                      ++   ++    +.++|++|.....|.+|++..+..  .++.             +.+    .....+||+++++    + 
T Consensus       159 VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s--wRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~  236 (381)
T 3q6k_A          159 VDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS--WNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNR  236 (381)
T ss_dssp             EEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE--EEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCC
T ss_pred             EecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE--EEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCe
Confidence            99   22    568999999999999999874321  1111             111    0125688999886    4 


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      .||.....+
T Consensus       237 ~LYf~plss  245 (381)
T 3q6k_A          237 PAYYLAGSA  245 (381)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEECCC
Confidence            488877666

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.30  E-value=6.7e-05  Score=65.83  Aligned_cols=128  Identities=12%  Similarity=0.066  Sum_probs=83.2

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                      ++.|..++.++.....+.......+.++++||+++| ++-...+.|..++.++.   ..+.+. ........+++.++|+
T Consensus       447 d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~l-as~~~d~~i~iw~~~~~---~~~~~~-~h~~~v~~l~~s~dg~  521 (577)
T 2ymu_A          447 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQ  521 (577)
T ss_dssp             TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEE-EEEETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSS
T ss_pred             CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEEcCCCC---EEEEEe-CCCCCEEEEEEcCCCC
Confidence            566777776543344344334556789999999854 45556788998987652   122332 2233567899999999


Q ss_pred             EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CC
Q 046107          128 FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QG  206 (224)
Q Consensus       128 l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g  206 (224)
                      +.++....                                    +.|..+|.+|+.+..+....+    .++.+.+. +|
T Consensus       522 ~l~s~~~d------------------------------------g~v~lwd~~~~~~~~~~~h~~----~v~~~~fs~dg  561 (577)
T 2ymu_A          522 TIASASDD------------------------------------KTVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDG  561 (577)
T ss_dssp             CEEEEETT------------------------------------SEEEEECTTSCEEEEEECCSS----CEEEEEECTTS
T ss_pred             EEEEEECc------------------------------------CEEEEEeCCCCEEEEEcCCCC----CEEEEEEcCCC
Confidence            88776665                                    578888889998888865543    36666654 56


Q ss_pred             EEEEEeCCCCeEEE
Q 046107          207 NLYLASINSNFIGK  220 (224)
Q Consensus       207 ~lyv~~~~~~~i~~  220 (224)
                      +.+++......|.+
T Consensus       562 ~~l~s~~~D~~i~~  575 (577)
T 2ymu_A          562 QTIASASSDKTVKL  575 (577)
T ss_dssp             SCEEEEETTSCEEE
T ss_pred             CEEEEEeCCCEEEE
Confidence            65565555555543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.30  E-value=0.00012  Score=59.11  Aligned_cols=131  Identities=9%  Similarity=-0.034  Sum_probs=84.9

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .+|.|..+|..+++.............++++|+++.|+++. ..+.|..+++....   ...+. ........+++.++|
T Consensus       203 ~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~---~~~~~-~~~~~v~~~~~~~~~  277 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPD---KYQLH-LHESCVLSLKFAYCG  277 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSC---EEEEC-CCSSCEEEEEECTTS
T ss_pred             cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCC---eEEEc-CCccceeEEEECCCC
Confidence            36788888887666554444455567899999999666654 56789999987532   22221 223456899999999


Q ss_pred             CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-
Q 046107          127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-  204 (224)
Q Consensus       127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-  204 (224)
                      +++++....                                    +.|..++. .++.+...... +    .++.+... 
T Consensus       278 ~~l~~~~~d------------------------------------g~i~~~~~~~~~~~~~~~~~-~----~v~~~~~s~  316 (337)
T 1gxr_A          278 KWFVSTGKD------------------------------------NLLNAWRTPYGASIFQSKES-S----SVLSCDISV  316 (337)
T ss_dssp             SEEEEEETT------------------------------------SEEEEEETTTCCEEEEEECS-S----CEEEEEECT
T ss_pred             CEEEEecCC------------------------------------CcEEEEECCCCeEEEEecCC-C----cEEEEEECC
Confidence            987776665                                    56667774 46665444322 2    35555554 


Q ss_pred             CCEEEEEeCCCCeEEEeeC
Q 046107          205 QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~~  223 (224)
                      +++++++......|..+++
T Consensus       317 ~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEecCCCeEEEEEE
Confidence            4555565556777777664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.29  E-value=1.3e-05  Score=71.97  Aligned_cols=115  Identities=14%  Similarity=0.077  Sum_probs=72.1

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC------CeEEEEe-cCccccceeEEecCCCEE
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS------KQVSIVL-EGLYFANGVALSKHGDFV   83 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~------g~~~~~~-~~~~~pngia~~~dg~~L   83 (224)
                      ...++++.+||+ |+++..... .       .........|+.++.++      ++.+.+. .+.....+++++|||++|
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~-~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~l  202 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFT-G-------EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQA  202 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEC-S-------SSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEE
T ss_pred             cccCcEECCCCCEEEEEEeccc-C-------CCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEE
Confidence            345788889985 655532100 0       00012235799999886      6666665 555666789999999999


Q ss_pred             EEEeCCC-------CeEEEEEccC-CCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107           84 VVCESWK-------FRCIKHWLKL-GDKRDREIFIENLPGGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        84 yv~~~~~-------~~I~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~  134 (224)
                      +++....       ..|+.+++++ +..+..+.+..........+++.+||+++++...
T Consensus       203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~  261 (662)
T 3azo_A          203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR  261 (662)
T ss_dssp             EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT
T ss_pred             EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECC
Confidence            7766432       5899999873 3222333333222345678899999997766543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.29  E-value=1e-05  Score=68.91  Aligned_cols=118  Identities=14%  Similarity=-0.025  Sum_probs=76.1

Q ss_pred             eEEecCCCEEEEEeCC----CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChh
Q 046107           74 VALSKHGDFVVVCESW----KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKN  148 (224)
Q Consensus        74 ia~~~dg~~Lyv~~~~----~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~  148 (224)
                      .+..||++++||++..    .+.|+++|.+..+.  ...+.  ....| ++++++||+ +|+++....-.          
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v--~~~I~--vG~~P-~va~spDG~~lyVan~~~~r~----------  102 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV--IGMID--GGFLP-NPVVADDGSFIAHASTVFSRI----------  102 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE--EEEEE--ECSSC-EEEECTTSSCEEEEEEEEEET----------
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE--EEEEE--CCCCC-cEEECCCCCEEEEEccccccc----------
Confidence            3457899999999985    68999999864221  11111  12357 499999997 99998532000          


Q ss_pred             HHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcc---cceeEE--EEECCEEEEEeCC-CCeEEEe
Q 046107          149 RKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNI---SFVTSA--LEFQGNLYLASIN-SNFIGKL  221 (224)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~---~~~t~~--~~~~g~lyv~~~~-~~~i~~~  221 (224)
                                       ......+.|..+|.. ++++..+..+.|...   ..+..+  ..++.+||+++.. ++.|.++
T Consensus       103 -----------------~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVI  165 (386)
T 3sjl_D          103 -----------------ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV  165 (386)
T ss_dssp             -----------------TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred             -----------------ccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEE
Confidence                             000001679999976 788888876543210   122223  3467889999975 8999999


Q ss_pred             eC
Q 046107          222 PL  223 (224)
Q Consensus       222 ~~  223 (224)
                      ++
T Consensus       166 D~  167 (386)
T 3sjl_D          166 DL  167 (386)
T ss_dssp             ET
T ss_pred             EC
Confidence            86

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.27  E-value=9.9e-05  Score=62.98  Aligned_cols=81  Identities=14%  Similarity=-0.014  Sum_probs=54.7

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...|+.+|.++++...+.........++|+|||+.|+++...  ...|+.+++.++.   ...+. ........+++.+|
T Consensus       202 ~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~-~~~~~~~~~~~spd  277 (415)
T 2hqs_A          202 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVT-DGRSNNTEPTWFPD  277 (415)
T ss_dssp             SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECC-CCSSCEEEEEECTT
T ss_pred             CcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCc-CCCCcccceEECCC
Confidence            357999998877776655444556799999999988866543  3569999987532   22222 22234567889999


Q ss_pred             CCEEEEE
Q 046107          126 GSFWISL  132 (224)
Q Consensus       126 G~l~va~  132 (224)
                      |+..+..
T Consensus       278 g~~l~~~  284 (415)
T 2hqs_A          278 SQNLAFT  284 (415)
T ss_dssp             SSEEEEE
T ss_pred             CCEEEEE
Confidence            9844433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.26  E-value=5.3e-05  Score=69.94  Aligned_cols=147  Identities=12%  Similarity=0.041  Sum_probs=92.6

Q ss_pred             ccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-----ccccceeEEecCCCEEE
Q 046107           11 RFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-----LYFANGVALSKHGDFVV   84 (224)
Q Consensus        11 ~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-----~~~pngia~~~dg~~Ly   84 (224)
                      .....++.+++|+ ||++..                  .+.|+++++++++.+.+...     ......|+.+++|+ ||
T Consensus       406 ~~v~~i~~d~~g~~lWigt~------------------~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lw  466 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTH------------------AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LW  466 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEET------------------TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EE
T ss_pred             ccEEEEEEcCCCCEEEEEeC------------------cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EE
Confidence            3445777888999 999852                  24599999887777665321     12345788888886 99


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEeecc-----C-CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFIEN-----L-PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~~~-----~-~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                      ++..  +.|+++++++..   .+.+...     . ......+..|++|++|++.. .                       
T Consensus       467 igt~--~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-----------------------  517 (795)
T 4a2l_A          467 LGTL--SALVRFNPEQRS---FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-----------------------  517 (795)
T ss_dssp             EEES--SCEEEEETTTTE---EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-----------------------
T ss_pred             EEec--CceeEEeCCCCe---EEEccccccccccCCceEEEEEECCCCCEEEEeC-C-----------------------
Confidence            9976  569999986422   2222110     1 12346788999999999986 3                       


Q ss_pred             hHHhhhhcCCCceEEEEEECCCCcEEEEEe---CCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEee
Q 046107          159 LINQLMSTGKGAAAKVVKVSANGSIIREFN---DPNAKNISFVTSALEF-QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~---~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~  222 (224)
                                    .+.+++++.... .+.   ...+..-..+..+..+ +|+||+++..  -|.+++
T Consensus       518 --------------Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d  568 (795)
T 4a2l_A          518 --------------GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFN  568 (795)
T ss_dssp             --------------CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEE
T ss_pred             --------------ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeEC
Confidence                          267777664433 332   1112111245556554 6899999875  455554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.23  E-value=0.00031  Score=56.76  Aligned_cols=104  Identities=13%  Similarity=0.028  Sum_probs=67.6

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...+.+++.++|+..++-.                 .+|.|..++..+++......+ ....+.++++||++.| ++-..
T Consensus        24 ~~v~~~~~s~~~~~l~s~~-----------------~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~   85 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSS-----------------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL-VSASD   85 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEET
T ss_pred             CcEEEEEECCCCCEEEEee-----------------CCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEE-EEECC
Confidence            4457888999998666632                 356777777755655544433 3445789999999855 45556


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .+.|..+++....  ....+. ........+++.++|+++++....
T Consensus        86 d~~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d  128 (312)
T 4ery_A           86 DKTLKIWDVSSGK--CLKTLK-GHSNYVFCCNFNPQSNLIVSGSFD  128 (312)
T ss_dssp             TSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCC
Confidence            7899999986421  112222 222345678899999988776655

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.22  E-value=1.2e-05  Score=71.33  Aligned_cols=125  Identities=13%  Similarity=0.178  Sum_probs=82.1

Q ss_pred             ccccccccceEEec-CCcEEEEeCCCC-CCcch---hhhhhccCCCCceEEEEeCCCC-------eEEEEec--------
Q 046107            7 CHLIRFANDVIEAS-DGSLYITVSSTK-FAPKA---YYLDLVEGEPHGQLLRYDPSSK-------QVSIVLE--------   66 (224)
Q Consensus         7 ~~~~~~~n~v~~~~-~G~ly~t~~~~~-~~~~~---~~~~~~~~~~~g~l~~~~~~~g-------~~~~~~~--------   66 (224)
                      ..+|.-|+++++++ +|.||++-+... .+...   -..+.......|.|+++.++++       +++.+..        
T Consensus       380 AT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~  459 (592)
T 4a9v_A          380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA  459 (592)
T ss_dssp             CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred             CccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccc
Confidence            34577899999998 789999865421 11000   0011223346799999986422       2554421        


Q ss_pred             --------------CccccceeEEecCCCEEEE-EeCC-----------CCeEEEEEccCCCcccceEeeccC-CCCCCc
Q 046107           67 --------------GLYFANGVALSKHGDFVVV-CESW-----------KFRCIKHWLKLGDKRDREIFIENL-PGGPDN  119 (224)
Q Consensus        67 --------------~~~~pngia~~~dg~~Lyv-~~~~-----------~~~I~~~~~~~~~~~~~~~~~~~~-~~~p~~  119 (224)
                                    .+..|++|+++++|+ ||+ +|..           .+.|++++++.   ++.+.|+... ...|+|
T Consensus       460 ~~~~~g~~~~~~~~~fnsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t---Gel~~fl~~P~~aEpnG  535 (592)
T 4a9v_A          460 GTPKGGSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPAT---GEIRRFMVGPIGCEVTG  535 (592)
T ss_dssp             TSGGGCCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTT---CCEEEEEECCTTCEEEE
T ss_pred             cccccCccCccccCccCCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCC---CeEEEEEeCCCCccccC
Confidence                          257799999999997 888 6643           34899998854   3455555432 246899


Q ss_pred             eEECCCCC-EEEEEecC
Q 046107          120 INLAPDGS-FWISLIKM  135 (224)
Q Consensus       120 i~~d~dG~-l~va~~~~  135 (224)
                      +++.+|++ |||+....
T Consensus       536 iafSPD~ktLfV~vQHP  552 (592)
T 4a9v_A          536 ISFSPDQKTLFVGIQHP  552 (592)
T ss_dssp             EEECTTSSEEEEEEEST
T ss_pred             CEECCCCCEEEEEEeCC
Confidence            99999986 88887554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.21  E-value=0.00029  Score=57.78  Aligned_cols=84  Identities=12%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             CceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .|.+..++..+++.... .........++++|||++|..+ ...+.|..+++....  ....+ .........+++.++|
T Consensus       143 dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg-~~dg~i~iwd~~~~~--~~~~~-~~h~~~v~~l~~spd~  218 (321)
T 3ow8_A          143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG-AIDGIINIFDIATGK--LLHTL-EGHAMPIRSLTFSPDS  218 (321)
T ss_dssp             TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEE-CCCSSCCCEEEECTTS
T ss_pred             CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE-cCCCeEEEEECCCCc--EEEEE-cccCCceeEEEEcCCC
Confidence            56777777665544333 3334456789999999855544 567889999986421  11222 1222346889999999


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      +++++....
T Consensus       219 ~~l~s~s~d  227 (321)
T 3ow8_A          219 QLLVTASDD  227 (321)
T ss_dssp             CEEEEECTT
T ss_pred             CEEEEEcCC
Confidence            988776655

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.21  E-value=0.00023  Score=59.21  Aligned_cols=157  Identities=13%  Similarity=-0.002  Sum_probs=101.5

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-------ccccceeEEecCCCE
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-------LYFANGVALSKHGDF   82 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-------~~~pngia~~~dg~~   82 (224)
                      -.....+++.++| ++++-.                 .+|.|..+|..+++.......       ......++++|+++.
T Consensus       186 ~~~i~~~~~~~~~-~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~  247 (397)
T 1sq9_A          186 SQFATSVDISERG-LIATGF-----------------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  247 (397)
T ss_dssp             CCCCCEEEECTTS-EEEEEC-----------------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             CCCceEEEECCCc-eEEEEe-----------------CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence            3446788999998 555532                 367888899876655444444       455679999999986


Q ss_pred             EEEEeCCC---CeEEEEEccCCCcccceEeecc------------CCCCCCceEECCCCCEEEEEecCCchhhhhhccCh
Q 046107           83 VVVCESWK---FRCIKHWLKLGDKRDREIFIEN------------LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSK  147 (224)
Q Consensus        83 Lyv~~~~~---~~I~~~~~~~~~~~~~~~~~~~------------~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p  147 (224)
                      |+++. ..   +.|..|++....  ....+...            .......+++.++|+++++....            
T Consensus       248 l~~~~-~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------  312 (397)
T 1sq9_A          248 LAIAH-DSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD------------  312 (397)
T ss_dssp             EEEEE-EETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT------------
T ss_pred             EEEEe-cCCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC------------
Confidence            65554 44   789999986421  12222110            12345789999999988776665            


Q ss_pred             hHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEe------CC-----CCCc------ccceeEEEEE-CC--
Q 046107          148 NRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFN------DP-----NAKN------ISFVTSALEF-QG--  206 (224)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~------~~-----~g~~------~~~~t~~~~~-~g--  206 (224)
                                              +.|..+|. .++.+..+.      ..     .|..      -..++.+... ++  
T Consensus       313 ------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~  368 (397)
T 1sq9_A          313 ------------------------GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR  368 (397)
T ss_dssp             ------------------------SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred             ------------------------CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence                                    56777774 477777776      22     0000      1346666655 34  


Q ss_pred             --------EEEEEeCCCCeEEEeeC
Q 046107          207 --------NLYLASINSNFIGKLPL  223 (224)
Q Consensus       207 --------~lyv~~~~~~~i~~~~~  223 (224)
                              +++++......|.++++
T Consensus       369 ~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          369 SGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             BSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ccccccccceEEEecCCCcEEEEEc
Confidence                    67777777888888765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.18  E-value=0.00016  Score=56.93  Aligned_cols=96  Identities=16%  Similarity=0.128  Sum_probs=63.7

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-CeEEEEecCc--cccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-KQVSIVLEGL--YFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g~~~~~~~~~--~~pngia~~~dg~~Lyv~~~   88 (224)
                      ....+++.++|+.+++.                  ..+.|+.+|.++ ++...+....  ...+.++++|||++|+++..
T Consensus        43 ~v~~~~~spdg~~l~~~------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLN------------------SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDK  104 (297)
T ss_dssp             CCEEEEECTTSSEEEEE------------------ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEEC
T ss_pred             ceEeeEECCCCCEEEEE------------------cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEe
Confidence            35678888888755543                  146799999886 6665554333  45678999999998887773


Q ss_pred             C---CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEE
Q 046107           89 W---KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWI  130 (224)
Q Consensus        89 ~---~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~v  130 (224)
                      .   ..+|+.++..+..   ...+..  ......+++.++|+..+
T Consensus       105 ~~~~~~~l~~~~~~~~~---~~~~~~--~~~~~~~~~spdg~~l~  144 (297)
T 2ojh_A          105 VEFGKSAIYLLPSTGGT---PRLMTK--NLPSYWHGWSPDGKSFT  144 (297)
T ss_dssp             TTTSSCEEEEEETTCCC---CEECCS--SSSEEEEEECTTSSEEE
T ss_pred             CCCCcceEEEEECCCCc---eEEeec--CCCccceEECCCCCEEE
Confidence            3   5789988876532   222221  12356778999998433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.16  E-value=0.00041  Score=55.94  Aligned_cols=103  Identities=15%  Similarity=0.063  Sum_probs=63.3

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI---VLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~---~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..+.+++.++|+..++-                 ..+|.|..++.++++...   +.........++++|+++.|+++. 
T Consensus        99 ~v~~~~~~~~~~~l~~~-----------------~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  160 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVG-----------------GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-  160 (337)
T ss_dssp             BEEEEEECTTSSEEEEE-----------------ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-
T ss_pred             cEEEEEEcCCCCEEEEE-----------------cCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe-
Confidence            34566777777644442                 135778888876554222   222334457899999998666554 


Q ss_pred             CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+.|..+++....  ....+. ........+++.++|+++++....
T Consensus       161 ~dg~v~~~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          161 SDGNIAVWDLHNQT--LVRQFQ-GHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             TTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCcEEEEeCCCCc--eeeeee-cccCceEEEEECCCCCEEEEEecC
Confidence            56789999986421  112221 223456889999999877776655

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.14  E-value=0.00036  Score=56.37  Aligned_cols=138  Identities=11%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+|.|..+|..+++....... ......++++|+++.| ++....+.|..|++....  ....+..........++++++
T Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~  203 (312)
T 4ery_A          127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPN  203 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTT
T ss_pred             CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCC
Confidence            367788888765554433333 3345789999999844 555567889999986421  112222111123466899999


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      |++.++....                                    +.|..+|. .++.+..+.................
T Consensus       204 ~~~l~~~~~d------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          204 GKYILAATLD------------------------------------NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             SSEEEEEETT------------------------------------TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred             CCEEEEEcCC------------------------------------CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence            9987776655                                    45666664 4666666654333211111111223


Q ss_pred             CCEEEEEeCCCCeEEEeeC
Q 046107          205 QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~~  223 (224)
                      ++.++++....+.|..+++
T Consensus       248 ~~~~l~sg~~dg~i~vwd~  266 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNL  266 (312)
T ss_dssp             SSCEEEECCTTSCEEEEET
T ss_pred             CCcEEEEECCCCEEEEEEC
Confidence            4555666656666666554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.13  E-value=0.00024  Score=63.75  Aligned_cols=158  Identities=9%  Similarity=-0.050  Sum_probs=89.9

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC-CC---eEEEEecC-ccccceeEEecCCCEEEE
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS-SK---QVSIVLEG-LYFANGVALSKHGDFVVV   85 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~g---~~~~~~~~-~~~pngia~~~dg~~Lyv   85 (224)
                      ....+++.+||+ |+++....  ..        .......|+.++.+ ++   +...+..+ ......++++|||+ ||+
T Consensus       189 ~~~~~~~SpDG~~la~~~~~~--~~--------~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~  257 (662)
T 3azo_A          189 FVTGPRLSPDGRQAVWLAWDH--PR--------MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIV  257 (662)
T ss_dssp             EECCCEECTTSSEEEEEEECT--TC--------CTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEE
T ss_pred             cccCceECCCCCEEEEEECCC--CC--------CCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEE
Confidence            445788999995 66554220  00        00123578888877 46   55555444 45667899999999 555


Q ss_pred             EeCCCC--eEEEEEccCCCcccceEeeccC--CC----C--CCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhh
Q 046107           86 CESWKF--RCIKHWLKLGDKRDREIFIENL--PG----G--PDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEE  155 (224)
Q Consensus        86 ~~~~~~--~I~~~~~~~~~~~~~~~~~~~~--~~----~--p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~  155 (224)
                      +....+  +|++++++++.   .+.+....  ..    .  ...+++.++|.++++... ..                  
T Consensus       258 ~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~------------------  315 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA------------------  315 (662)
T ss_dssp             EECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS------------------
T ss_pred             EECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc------------------
Confidence            554444  89999875432   22222110  00    1  346788788887776544 21                  


Q ss_pred             chhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEE-EEECCEEEEEeCCCC---eEEEee
Q 046107          156 HPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSA-LEFQGNLYLASINSN---FIGKLP  222 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~-~~~~g~lyv~~~~~~---~i~~~~  222 (224)
                                      ..++++|.++..+..+..+.+    .+..+ ..+++.+++.....+   .|.+++
T Consensus       316 ----------------~~l~~~d~~~~~~~~l~~~~~----~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          316 ----------------AVLGILDPESGELVDAAGPWT----EWAATLTVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             ----------------CEEEEEETTTTEEEECCSSCC----EEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             ----------------cEEEEEECCCCcEEEecCCCC----eEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence                            578888877554555544333    23344 456666666554433   444444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.11  E-value=0.00023  Score=59.47  Aligned_cols=153  Identities=12%  Similarity=0.047  Sum_probs=92.0

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--c-CccccceeEEecCCCEEEEEeCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--E-GLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~-~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      .++|++.|||++.++-.                  .+.+.+++..+++.....  . .....+.++++||++.|..+...
T Consensus       179 V~~v~fspdg~~l~s~s------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d  240 (365)
T 4h5i_A          179 VKDLHFSTDGKVVAYIT------------------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK  240 (365)
T ss_dssp             CCEEEECTTSSEEEEEC------------------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred             eEEEEEccCCceEEecc------------------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence            45677777776655532                  234555554434432221  1 22335689999999866666543


Q ss_pred             CC---eEEEEEccCCCcccc--eEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           90 KF---RCIKHWLKLGDKRDR--EIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        90 ~~---~I~~~~~~~~~~~~~--~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                      ..   .|+.++.........  ..+. ........+++.|||++.++....                             
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D-----------------------------  290 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASND-----------------------------  290 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEETT-----------------------------
T ss_pred             CcceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcCC-----------------------------
Confidence            32   466666543211111  1111 112234678999999988877666                             


Q ss_pred             hcCCCceEEEEEECC-CCcEEEEEe-CCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeCC
Q 046107          165 STGKGAAAKVVKVSA-NGSIIREFN-DPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~-~G~~~~~~~-~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~~  224 (224)
                             +.|..+|. .|+.+..+. ...    ..++.+++. +|++.++....+.|-+.++|
T Consensus       291 -------~~V~iwd~~~~~~~~~~~~gH~----~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          291 -------NSIALVKLKDLSMSKIFKQAHS----FAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             -------SCEEEEETTTTEEEEEETTSSS----SCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             -------CEEEEEECCCCcEEEEecCccc----CCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence                   45677774 578777652 222    357777765 68888888888999998875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.0005  Score=56.09  Aligned_cols=136  Identities=10%  Similarity=0.031  Sum_probs=83.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC----CCeEEEEEccCCCc-ccc--------eEeeccC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW----KFRCIKHWLKLGDK-RDR--------EIFIENL  113 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~----~~~I~~~~~~~~~~-~~~--------~~~~~~~  113 (224)
                      .+|.|..+|..+++.............++++|+++.|+++...    .+.|..|++..... ...        ..+. ..
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~  172 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-TH  172 (369)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CC
T ss_pred             CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CC
Confidence            3677888887666655544455566799999999966666543    27899998864211 111        1111 11


Q ss_pred             CC--CCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC--CcEEEEEeC
Q 046107          114 PG--GPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN--GSIIREFND  189 (224)
Q Consensus       114 ~~--~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--G~~~~~~~~  189 (224)
                      .+  ....++++++|+++++....                                    +.|..+|..  ++.+..+..
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~d------------------------------------g~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHKD------------------------------------GKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEETT------------------------------------SEEEEEETTTTTEEEEEEEC
T ss_pred             cCccceeEEEEcCCCCEEEEEcCC------------------------------------CEEEEEECCCCcEeEEEEec
Confidence            11  56788899999877766555                                    466666654  566666654


Q ss_pred             CCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          190 PNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       190 ~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      ..+    .++.+... +++++++......|..+++
T Consensus       217 ~~~----~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          217 HEK----SISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             CSS----CEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCC----ceeEEEECCCCCEEEEecCCceEEEEEC
Confidence            433    35555544 4555555556667777664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.09  E-value=0.00017  Score=65.24  Aligned_cols=137  Identities=14%  Similarity=0.104  Sum_probs=80.1

Q ss_pred             CCceEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCCC----CeEEEEEccCCCcccceEeecc-CCC---
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG---LYFANGVALSKHGDFVVVCESWK----FRCIKHWLKLGDKRDREIFIEN-LPG---  115 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~---~~~pngia~~~dg~~Lyv~~~~~----~~I~~~~~~~~~~~~~~~~~~~-~~~---  115 (224)
                      ....|+.+|.++++...+...   ...+..++|+|||++|+++....    ..|+.+++.++.  ..+.+... ...   
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVE  310 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeEC
Confidence            456799999987776554322   24456899999999898866443    488889886531  22222211 111   


Q ss_pred             CCCceEECC--CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCC
Q 046107          116 GPDNINLAP--DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAK  193 (224)
Q Consensus       116 ~p~~i~~d~--dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~  193 (224)
                      ....+++.+  ||+++++......                                  ..|+.++.+|+.+..+..... 
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~g~----------------------------------~~l~~~~~~~~~~~~l~~~~~-  355 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRDGW----------------------------------NHLYLYDTTGRLIRQVTKGEW-  355 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTTSS----------------------------------CEEEEEETTSCEEEECCCSSS-
T ss_pred             ccCCceeecCCCCEEEEEEccCCc----------------------------------cEEEEEECCCCEEEecCCCCe-
Confidence            236789999  9985544332210                                  467777777766665532211 


Q ss_pred             cccceeE-EEE--ECCEEEEEeCCCC----eEEEeeC
Q 046107          194 NISFVTS-ALE--FQGNLYLASINSN----FIGKLPL  223 (224)
Q Consensus       194 ~~~~~t~-~~~--~~g~lyv~~~~~~----~i~~~~~  223 (224)
                         .+.. +..  +++.||+++...+    .|.++++
T Consensus       356 ---~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          356 ---EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             ---CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             ---EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence               1222 222  3456777766554    6666553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.09  E-value=0.00017  Score=65.56  Aligned_cols=107  Identities=17%  Similarity=0.072  Sum_probs=67.5

Q ss_pred             ccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCc---------------------
Q 046107           11 RFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL---------------------   68 (224)
Q Consensus        11 ~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~---------------------   68 (224)
                      ..++.+++.+||+ |+++....            .......|+.+|.++++...+....                     
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d------------~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKD------------SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQR  104 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCS------------SCTTEEEEEEEETTTCCEEEEECGGGTC------------------
T ss_pred             CCCCCceEecCCCEEEEEeccC------------CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhh
Confidence            3467899999996 55554210            0011237999998877766654332                     


Q ss_pred             ----cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEE
Q 046107           69 ----YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISL  132 (224)
Q Consensus        69 ----~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~  132 (224)
                          .....++|+|||++|+++..  +.|+.++++++.......+. .....+..+++.|||+..+..
T Consensus       105 ~~~~~~v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~  169 (741)
T 2ecf_A          105 IAAMTGIVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFI  169 (741)
T ss_dssp             --CCEESCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEE
T ss_pred             hccccCcceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEE
Confidence                12478999999998888775  89999999764100222222 122346778888888844443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.08  E-value=0.00027  Score=57.82  Aligned_cols=101  Identities=12%  Similarity=0.024  Sum_probs=64.5

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW-   89 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~-   89 (224)
                      ....+++.|||+ |+++...             .......||.++.++++...+..... ...++|+|||+.|+++... 
T Consensus        60 ~~~~~~~SpDg~~la~~~~~-------------~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~  125 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRAN-------------EEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKR  125 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEE-------------TTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECC
T ss_pred             cCCCeEECCCCCEEEEEEec-------------cCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccC
Confidence            344567777874 5554311             00124469999988777666644334 7889999999988777532 


Q ss_pred             -------------------------CCeEEEEEccCCCcccc-eEeeccCCCCCCceEECCCCCEEEEEe
Q 046107           90 -------------------------KFRCIKHWLKLGDKRDR-EIFIENLPGGPDNINLAPDGSFWISLI  133 (224)
Q Consensus        90 -------------------------~~~I~~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d~dG~l~va~~  133 (224)
                                               ...|++++++++   +. +.+..  + ....+++.+|| ++++..
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---~~~~~l~~--~-~~~~~~~spdg-~~~~~~  188 (347)
T 2gop_A          126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE---EVIEEFEK--P-RFSSGIWHRDK-IVVNVP  188 (347)
T ss_dssp             CC---------CCCC---------CEEEEEEEETTTT---EEEEEEEE--E-TTCEEEEETTE-EEEEEE
T ss_pred             CCcCCcEEEcccceeecCcccccCccceEEEEECCCC---eEEeeecC--C-CcccccCCCCe-EEEEEe
Confidence                                     357888988653   22 33332  3 56788999999 666543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.00025  Score=59.23  Aligned_cols=156  Identities=10%  Similarity=0.028  Sum_probs=101.0

Q ss_pred             ccccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-------ccccceeEEecCCCE
Q 046107           11 RFANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-------LYFANGVALSKHGDF   82 (224)
Q Consensus        11 ~~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-------~~~pngia~~~dg~~   82 (224)
                      .....+++.++ +.++++-.                 .+|.|..+|..+++.......       ....+.++++|++..
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAG-----------------SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEES-----------------SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             CCeeEEEeCCCCCcEEEEEc-----------------CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence            34567888888 56777642                 367788888876655443332       345679999999854


Q ss_pred             EEEEeCCCC---eEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           83 VVVCESWKF---RCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        83 Lyv~~~~~~---~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                      ++++....+   .|..|++.... .....+..........+++.+ +|+++++....                       
T Consensus       229 ~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-----------------------  284 (416)
T 2pm9_A          229 RVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-----------------------  284 (416)
T ss_dssp             EEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-----------------------
T ss_pred             EEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCC-----------------------
Confidence            666655666   89999986421 111122101223567899998 88877776665                       


Q ss_pred             hHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CC-EEEEEeCCCCeEEEeeCC
Q 046107          159 LINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QG-NLYLASINSNFIGKLPLK  224 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g-~lyv~~~~~~~i~~~~~~  224 (224)
                                   +.|..+|. .++.+..+....+    .++.+... ++ +++++....+.|.+++++
T Consensus       285 -------------g~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          285 -------------NTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             -------------SEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             -------------CCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence                         57788885 4788777765443    34555554 34 677777778888887763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.06  E-value=0.00021  Score=59.37  Aligned_cols=152  Identities=11%  Similarity=-0.007  Sum_probs=98.4

Q ss_pred             ccccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec---CccccceeEEec-CCCEEEE
Q 046107           11 RFANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE---GLYFANGVALSK-HGDFVVV   85 (224)
Q Consensus        11 ~~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~---~~~~pngia~~~-dg~~Lyv   85 (224)
                      ...+.+++.++| +++++-.                 .+|.|..++..+++......   .......++++| +++ +++
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~  135 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGS-----------------KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN-QLF  135 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEE-----------------BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE-EEE
T ss_pred             CCEEEEEECCCCCCEEEEEc-----------------CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC-EEE
Confidence            445678888888 6666632                 25778788876555444432   334557999999 555 555


Q ss_pred             EeCCCCeEEEEEccCCCcccceEeeccC--CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhh
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFIENL--PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQL  163 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  163 (224)
                      +....+.|..+++.+.   ....+....  ......+++.++|++.++....                            
T Consensus       136 s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------------------  184 (383)
T 3ei3_B          136 VSSIRGATTLRDFSGS---VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST----------------------------  184 (383)
T ss_dssp             EEETTTEEEEEETTSC---EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT----------------------------
T ss_pred             EEeCCCEEEEEECCCC---ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC----------------------------
Confidence            5567789999998752   223332111  1346789999999987776665                            


Q ss_pred             hhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCE-EEEEeCCCCeEEEeeC
Q 046107          164 MSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGN-LYLASINSNFIGKLPL  223 (224)
Q Consensus       164 ~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~-lyv~~~~~~~i~~~~~  223 (224)
                              +.|..+|.+++.+..+....+    .++.+... +++ ++++......|..+++
T Consensus       185 --------~~i~i~d~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  234 (383)
T 3ei3_B          185 --------GRLLLLGLDGHEIFKEKLHKA----KVTHAEFNPRCDWLMATSSVDATVKLWDL  234 (383)
T ss_dssp             --------SEEEEEETTSCEEEEEECSSS----CEEEEEECSSCTTEEEEEETTSEEEEEEG
T ss_pred             --------CCEEEEECCCCEEEEeccCCC----cEEEEEECCCCCCEEEEEeCCCEEEEEeC
Confidence                    567777778887777765443    35555544 344 6666666677777664

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.03  E-value=0.00037  Score=58.52  Aligned_cols=135  Identities=10%  Similarity=0.073  Sum_probs=81.5

Q ss_pred             CceEEEEeCCCCe--------EEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee-ccCCCCCC
Q 046107           48 HGQLLRYDPSSKQ--------VSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI-ENLPGGPD  118 (224)
Q Consensus        48 ~g~l~~~~~~~g~--------~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~-~~~~~~p~  118 (224)
                      +|.|..++..++.        ...+.......+.++++|+++.++++....+.|..+++....  ....+. ........
T Consensus       103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~  180 (402)
T 2aq5_A          103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--AVLTLGPDVHPDTIY  180 (402)
T ss_dssp             TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--EEEEECTTTCCSCEE
T ss_pred             CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--ccEEEecCCCCCceE
Confidence            5667667755431        222333345567899999984366666677899999986421  122221 12234568


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEE-eCCCCCccc
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREF-NDPNAKNIS  196 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~-~~~~g~~~~  196 (224)
                      .+++.++|+++++....                                    +.|..+|.. ++.+..+ ....+.   
T Consensus       181 ~~~~~~~~~~l~~~~~d------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~---  221 (402)
T 2aq5_A          181 SVDWSRDGALICTSCRD------------------------------------KRVRVIEPRKGTVVAEKDRPHEGT---  221 (402)
T ss_dssp             EEEECTTSSCEEEEETT------------------------------------SEEEEEETTTTEEEEEEECSSCSS---
T ss_pred             EEEECCCCCEEEEEecC------------------------------------CcEEEEeCCCCceeeeeccCCCCC---
Confidence            89999999877776655                                    567777754 6766666 333332   


Q ss_pred             ceeEEEEE-CCEEEEEe---CCCCeEEEeeC
Q 046107          197 FVTSALEF-QGNLYLAS---INSNFIGKLPL  223 (224)
Q Consensus       197 ~~t~~~~~-~g~lyv~~---~~~~~i~~~~~  223 (224)
                      .++.++.. +++++++.   .....|.++++
T Consensus       222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          222 RPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             SCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             cceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            23444433 56666665   46667776664

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.02  E-value=6.1e-05  Score=62.67  Aligned_cols=100  Identities=10%  Similarity=-0.056  Sum_probs=58.2

Q ss_pred             ccceEEec-CCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCc--cccceeEEecCCCEE-EEEe
Q 046107           13 ANDVIEAS-DGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL--YFANGVALSKHGDFV-VVCE   87 (224)
Q Consensus        13 ~n~v~~~~-~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~--~~pngia~~~dg~~L-yv~~   87 (224)
                      .+++++.| ||+ |.++....            .......||.++.++++...+....  .....++++|||+.| |++.
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~------------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGP------------HDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSC------------TTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             ccccEECCCCCCEEEEEEecC------------CCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEec
Confidence            45778888 874 54443210            0012457999998766555554333  234468999999977 5555


Q ss_pred             CCCC---eEEEEEccCCCcccceEeeccCC-----CCCCceEECCCCC
Q 046107           88 SWKF---RCIKHWLKLGDKRDREIFIENLP-----GGPDNINLAPDGS  127 (224)
Q Consensus        88 ~~~~---~I~~~~~~~~~~~~~~~~~~~~~-----~~p~~i~~d~dG~  127 (224)
                      ....   .|+.++++++.   .+.+.....     ..++++++.+||+
T Consensus       258 ~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLE---NRQLTSMPACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             ETTCCCEEEEEECTTTCC---EEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred             CCCCCcceEEEEecCCCc---eEEEEcCCCceeeeecCCCCeEccCCC
Confidence            4332   39999987532   222221111     1366777777776

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.01  E-value=0.00058  Score=56.18  Aligned_cols=131  Identities=10%  Similarity=0.056  Sum_probs=82.1

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~  124 (224)
                      .+|.|..+|..+++......+ ....+.++++|+++ ++++-+..+.|..|++....  ....+... .......+++.+
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECT
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECC
Confidence            367777788765554433333 34567999999998 55555677899999986421  11122111 112346789999


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEE
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALE  203 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~  203 (224)
                      +|++.++....                                    +.|..+|. .++.+..+....+    .++.+..
T Consensus       281 ~g~~l~~g~~d------------------------------------~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~  320 (340)
T 1got_B          281 SGRLLLAGYDD------------------------------------FNCNVWDALKADRAGVLAGHDN----RVSCLGV  320 (340)
T ss_dssp             TSSEEEEEETT------------------------------------SEEEEEETTTCCEEEEEECCSS----CEEEEEE
T ss_pred             CCCEEEEECCC------------------------------------CeEEEEEcccCcEeeEeecCCC----cEEEEEE
Confidence            99988887766                                    56777774 4777777765443    3666665


Q ss_pred             E-CCEEEEEeCCCCeEEE
Q 046107          204 F-QGNLYLASINSNFIGK  220 (224)
Q Consensus       204 ~-~g~lyv~~~~~~~i~~  220 (224)
                      . +++..++......|..
T Consensus       321 s~dg~~l~s~s~D~~i~i  338 (340)
T 1got_B          321 TDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             CTTSSCEEEEETTSCEEE
T ss_pred             cCCCCEEEEEcCCccEEe
Confidence            4 4555555555555544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.0002  Score=61.34  Aligned_cols=64  Identities=13%  Similarity=0.159  Sum_probs=44.5

Q ss_pred             ccceeEEecCCCEEEEEeCCCCeEEEEEcc--CCCcccceEeec-cCCCCCCceEECCCCCEEEEEecC
Q 046107           70 FANGVALSKHGDFVVVCESWKFRCIKHWLK--LGDKRDREIFIE-NLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+.++++||+++|+++....+.|..|++.  ++.  ....+.. ..+..+..++++++|++.++....
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  170 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAEDDTTVIIADKF  170 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcCCCCEEEEEeCC
Confidence            357899999999877877778899999986  321  2223221 223467899999999876665544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.00021  Score=61.18  Aligned_cols=153  Identities=15%  Similarity=0.097  Sum_probs=89.6

Q ss_pred             cccceEEecCCcE-EEEeCCCCCCcchhhhhhccCCCCceEEEEeCC--CCeE-EEEe--cCccccceeEEecCCCEEEE
Q 046107           12 FANDVIEASDGSL-YITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS--SKQV-SIVL--EGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus        12 ~~n~v~~~~~G~l-y~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~g~~-~~~~--~~~~~pngia~~~dg~~Lyv   85 (224)
                      ..+.+++.++|.. +++-.                 .+|.|..++..  +++. ..+.  .....++.++++||+++|++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  166 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACAD-----------------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVII  166 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEG-----------------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEEC-----------------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEE
Confidence            4678999999976 45532                 24555555543  3433 3332  23356689999999997777


Q ss_pred             EeCCCCeEEEEEccCCCccc--ceEeeccCCCCCCceEECCC---CCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           86 CESWKFRCIKHWLKLGDKRD--REIFIENLPGGPDNINLAPD---GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~--~~~~~~~~~~~p~~i~~d~d---G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      +.. .+.|+.+++.......  ...+. ...+....+++.++   |+++++....                         
T Consensus       167 ~~~-~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d-------------------------  219 (450)
T 2vdu_B          167 ADK-FGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRD-------------------------  219 (450)
T ss_dssp             EET-TSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETT-------------------------
T ss_pred             EeC-CCcEEEEecCCcccccccceeee-cccCceEEEEEcCCCCCCcEEEEEcCC-------------------------
Confidence            764 6889999986432211  11221 12245678899998   8776666554                         


Q ss_pred             HhhhhcCCCceEEEEEECC-CCcEEEEEe-CCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSA-NGSIIREFN-DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~-~G~~~~~~~-~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                 +.|..+|. .++.+..+. ...    ..++.++..+++++++......|.++++
T Consensus       220 -----------~~i~vwd~~~~~~~~~~~~~h~----~~v~~~~~sd~~~l~s~~~d~~v~vwd~  269 (450)
T 2vdu_B          220 -----------EHIKISHYPQCFIVDKWLFGHK----HFVSSICCGKDYLLLSAGGDDKIFAWDW  269 (450)
T ss_dssp             -----------SCEEEEEESCTTCEEEECCCCS----SCEEEEEECSTTEEEEEESSSEEEEEET
T ss_pred             -----------CcEEEEECCCCceeeeeecCCC----CceEEEEECCCCEEEEEeCCCeEEEEEC
Confidence                       23444442 466555532 222    2355555445555555556677777664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.99  E-value=0.00055  Score=56.87  Aligned_cols=105  Identities=15%  Similarity=0.015  Sum_probs=66.7

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ..+.|++.++|+..++-.                 .++.|..+|..+++......+ ....+.+++++++..++++.+..
T Consensus       129 ~V~~v~~spdg~~l~sgs-----------------~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          129 IVSTVSVLSSGTQAVSGS-----------------KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             CEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccc
Confidence            346777778887666532                 367788888876765544444 34457899999987688888888


Q ss_pred             CeEEEEEccCCCcccceEeeccC-CCCCCceEECCC-CCEEEEEecC
Q 046107           91 FRCIKHWLKLGDKRDREIFIENL-PGGPDNINLAPD-GSFWISLIKM  135 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~d-G~l~va~~~~  135 (224)
                      +.|..+++....  ....+.... ...+..+++.++ ++++++....
T Consensus       192 ~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          192 NRILLWDTRCPK--PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             SCEEEEETTSSS--CEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             cccccccccccc--eeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            999999986422  111221111 123567888875 4566665544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.99  E-value=0.00043  Score=58.68  Aligned_cols=151  Identities=12%  Similarity=0.117  Sum_probs=93.1

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ..+.+++.+++.+.++-.                 .+|.|..+|..+++......+ ....+.++++|+++ ++++-+..
T Consensus       110 ~V~~~~~~p~~~~l~s~s-----------------~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D  171 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSAS-----------------EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSAD  171 (410)
T ss_dssp             CEEEEEECSSSSEEEEEE-----------------SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCC
Confidence            455777888887777642                 367888888776654444433 34457899999998 55666677


Q ss_pred             CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCc
Q 046107           91 FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGA  170 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  170 (224)
                      +.|..|++.+..  ....+. ........+++.++|++.++....                                   
T Consensus       172 ~~i~iwd~~~~~--~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D-----------------------------------  213 (410)
T 1vyh_C          172 MTIKLWDFQGFE--CIRTMH-GHDHNVSSVSIMPNGDHIVSASRD-----------------------------------  213 (410)
T ss_dssp             SCCCEEETTSSC--EEECCC-CCSSCEEEEEECSSSSEEEEEETT-----------------------------------
T ss_pred             CeEEEEeCCCCc--eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCC-----------------------------------
Confidence            889999886421  111111 122345788999999987776665                                   


Q ss_pred             eEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          171 AAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       171 ~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                       +.|...|. .|+.+..+.....    .+..+... +++++++......|...++
T Consensus       214 -~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~g~~l~s~s~D~~v~vwd~  263 (410)
T 1vyh_C          214 -KTIKMWEVQTGYCVKTFTGHRE----WVRMVRPNQDGTLIASCSNDQTVRVWVV  263 (410)
T ss_dssp             -SEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             -CeEEEEECCCCcEEEEEeCCCc----cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence             45666664 4666666654332    24444443 4556666555566655543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.98  E-value=0.0013  Score=53.98  Aligned_cols=85  Identities=13%  Similarity=0.091  Sum_probs=57.5

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .++.|..+|..+++......+ ....+.++++|+++ ++++-...+.|..+++....  ....+. ........+++.++
T Consensus       162 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~  237 (340)
T 1got_B          162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPN  237 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTT
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCC
Confidence            467788888776655444433 34457899999998 66666778899999986421  122222 22335678999999


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      |+++++....
T Consensus       238 ~~~l~s~s~d  247 (340)
T 1got_B          238 GNAFATGSDD  247 (340)
T ss_dssp             SSEEEEEETT
T ss_pred             CCEEEEEcCC
Confidence            9988877665

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.98  E-value=0.0017  Score=52.40  Aligned_cols=104  Identities=11%  Similarity=0.040  Sum_probs=69.3

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL-YFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~-~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...+.+++.|+|.+.++-.                 .+|.|..+|..+++........ ...+.++++|++++| ++-+.
T Consensus        14 ~~V~~~~fsp~~~~l~s~~-----------------~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~   75 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTL-----------------YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-IVGSD   75 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE-EEEET
T ss_pred             CceEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEE-EEECC
Confidence            3467899999998777742                 3677888887766543333333 334689999999855 45556


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .+.|..+++..+.  ....+. .-......+++.+++.+.++....
T Consensus        76 d~~i~vwd~~~~~--~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D  118 (304)
T 2ynn_A           76 DFRIRVFNYNTGE--KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDD  118 (304)
T ss_dssp             TSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCEEEEEECCCCc--EEEEEe-CCCCcEEEEEEcCCCCEEEEECCC
Confidence            7899999986421  112222 223456789999999987776665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.98  E-value=0.00059  Score=61.62  Aligned_cols=98  Identities=14%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ..+..+++.+|+.+.++.                   .+.|+.+|.++++...+.........++++|||++|+++  ..
T Consensus        82 ~~v~~~~~spd~~~~~~~-------------------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~~  140 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFT-------------------QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--RN  140 (706)
T ss_dssp             CCCEEEEETTTTEEEEEE-------------------TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--ET
T ss_pred             cCceeEEECCCCeEEEEE-------------------CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--EC
Confidence            346788898887677763                   368999998877776666555567889999999988775  35


Q ss_pred             CeEEEEEccC-----CCcccceEeeccC-C-------------CCCCceEECCCCCEEEEE
Q 046107           91 FRCIKHWLKL-----GDKRDREIFIENL-P-------------GGPDNINLAPDGSFWISL  132 (224)
Q Consensus        91 ~~I~~~~~~~-----~~~~~~~~~~~~~-~-------------~~p~~i~~d~dG~l~va~  132 (224)
                      +.|+.+++++     +.   ...+.... .             ..+.++++.+||+..+..
T Consensus       141 ~~i~v~~~~~~~~~~g~---~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~  198 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSR---AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY  198 (706)
T ss_dssp             TEEEEEECBCTTSCCCC---CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred             CeEEEEecCcccccCCC---cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence            7899999865     32   11111110 1             125899999999854443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.97  E-value=0.0018  Score=52.75  Aligned_cols=164  Identities=12%  Similarity=0.024  Sum_probs=97.9

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-CeEEEEec-CccccceeEEecCCCEEEEEeCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-KQVSIVLE-GLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ....+++.++|+.+++-.                 .+|.|..+|..+ ++...... .......++++|+++.|+++ ..
T Consensus       177 ~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  238 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGH-----------------KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS-SR  238 (369)
T ss_dssp             CEEEEEECGGGCEEEEEE-----------------TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ET
T ss_pred             ceeEEEEcCCCCEEEEEc-----------------CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe-cC
Confidence            566777888887555532                 357888899865 34333333 34556799999999866555 56


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      .+.|..+++....  ....+.  .......+++.++|.+.++........+...                      ....
T Consensus       239 d~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------------------~~~~  292 (369)
T 3zwl_B          239 DTNSFLVDVSTLQ--VLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTT----------------------SANE  292 (369)
T ss_dssp             TSEEEEEETTTCC--EEEEEE--CSSCEEEEEECSSSSEEEEEECCC---------------------------------
T ss_pred             CceEEEEECCCCc--eeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEE----------------------ecCC
Confidence            7899999986422  122221  2345678999999987766655421100000                      0000


Q ss_pred             ceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      ....+..++. .++.+..+....+    .++.+... +++++++......|..+++
T Consensus       293 ~~~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          293 GKFEARFYHKIFEEEIGRVQGHFG----PLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             --CEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             CcceeEEEecCCCcchhheecccC----cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            0025666664 4777777765443    36666654 5677777777778877765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.97  E-value=0.00036  Score=57.29  Aligned_cols=106  Identities=8%  Similarity=-0.060  Sum_probs=63.7

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE---ecCccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV---LEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~---~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..+.+++.++|+++++-.                 .+|.|..++..+++....   .......+.++++|+++.|+++. 
T Consensus        54 ~v~~~~~~~~~~~l~~~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  115 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCG-----------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-  115 (372)
T ss_dssp             CEEEEEEETTTTEEEEEE-----------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             cccEEEEeCCCCEEEEEc-----------------CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-
Confidence            345677777776555532                 246666666555553322   22334567899999998666665 


Q ss_pred             CCCeEEEEEccCCCcc-cceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGDKR-DREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+.|..++++..... ....+..........+++.++|+++++....
T Consensus       116 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C          116 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            5678888887642210 1112211123456889999999877776554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.95  E-value=0.0001  Score=57.75  Aligned_cols=103  Identities=12%  Similarity=0.031  Sum_probs=68.0

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-------CeEEEEec-CccccceeEEecCCC
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-------KQVSIVLE-GLYFANGVALSKHGD   81 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-------g~~~~~~~-~~~~pngia~~~dg~   81 (224)
                      .....+++++|+|.||...                   .|.||+.++.+       +.-+.+.+ +...-..+.++++|.
T Consensus        40 w~~~~~laf~P~G~LYaV~-------------------~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~  100 (236)
T 1tl2_A           40 WSNFKFLFLSPGGELYGVL-------------------NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY  100 (236)
T ss_dssp             CTTCSEEEECTTSCEEEEE-------------------TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC
T ss_pred             cccceeEEECCCccEEEEe-------------------CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC
Confidence            4456699999999999983                   47899999854       22222322 344456889999997


Q ss_pred             EEEEEeCCCCeEEEEEcc--CCC--cccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           82 FVVVCESWKFRCIKHWLK--LGD--KRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~--~~~--~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                       ||++  ..++|+|+++-  +..  +.....+.+..=..-.-+.++++|.||... ..
T Consensus       101 -LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg  154 (236)
T 1tl2_A          101 -LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQ  154 (236)
T ss_dssp             -EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TT
T ss_pred             -EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CC
Confidence             9998  34899999872  211  111122221111134788999999999998 55

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.95  E-value=0.001  Score=60.47  Aligned_cols=105  Identities=12%  Similarity=0.033  Sum_probs=61.8

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK-   90 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~-   90 (224)
                      ..++++.|||+ |.++...             .+.....|+.+|.++++............+++|+|||+.||++.... 
T Consensus       127 ~~~~~~SPDg~~la~~~~~-------------~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~  193 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ  193 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc
Confidence            44677888885 4444321             01122379999988777654321112256899999999898876432 


Q ss_pred             --------------CeEEEEEccCCCcccceEeeccC--CCCCCceEECCCCCEEEE
Q 046107           91 --------------FRCIKHWLKLGDKRDREIFIENL--PGGPDNINLAPDGSFWIS  131 (224)
Q Consensus        91 --------------~~I~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~dG~l~va  131 (224)
                                    .+|+++++.++.. +...+....  +....++++++||+..+.
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~-~~~~v~~~~~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQS-EDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGG-GCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             cccccccccccCCCCEEEEEECCCCcc-cceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence                          3599998865321 112222221  222347889999984443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.95  E-value=0.00036  Score=64.05  Aligned_cols=142  Identities=12%  Similarity=0.124  Sum_probs=85.8

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCc------cccceeEEecCCCEEEE
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL------YFANGVALSKHGDFVVV   85 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~------~~pngia~~~dg~~Lyv   85 (224)
                      ....+..+++|+||++..                   +.|+++++.+++.+......      ...+.|..+++++.|||
T Consensus       147 ~i~~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi  207 (758)
T 3ott_A          147 TIYSIIRTKDNQIYVGTY-------------------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI  207 (758)
T ss_dssp             CEEEEEECTTCCEEEEET-------------------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE
T ss_pred             eEEEEEEcCCCCEEEEeC-------------------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE
Confidence            345677788899999751                   24889998766655432111      11346777777777899


Q ss_pred             EeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      +..  +.|++|++.....   ..+..........|+.|++|++|++.. .                              
T Consensus       208 gt~--~Gl~~~~~~~~~~---~~~~~l~~~~i~~i~~d~~g~lWigT~-~------------------------------  251 (758)
T 3ott_A          208 GTE--GYLFQYFPSTGQI---KQTEAFHNNSIKSLALDGNGDLLAGTD-N------------------------------  251 (758)
T ss_dssp             EEE--EEEEEEETTTTEE---EEEEEEEEEEEEEEEECTTCCEEEEET-T------------------------------
T ss_pred             EEC--CCCeEEcCCCCeE---EeccCCCCCeEEEEEEcCCCCEEEEeC-C------------------------------
Confidence            873  4799999864322   111110112356788999999999973 3                              


Q ss_pred             cCCCceEEEEEECCCCcEEEEEe-CCC---CCcccceeEEEEE-CCEEEEEeCCC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFN-DPN---AKNISFVTSALEF-QGNLYLASINS  215 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~-~~~---g~~~~~~t~~~~~-~g~lyv~~~~~  215 (224)
                             .+.+++++......+. .+.   +..-..+.++..+ +|+||+++..+
T Consensus       252 -------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G  299 (758)
T 3ott_A          252 -------GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG  299 (758)
T ss_dssp             -------EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred             -------ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc
Confidence                   3678888754444442 211   1111234555544 68999999653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.93  E-value=0.00042  Score=56.88  Aligned_cols=104  Identities=13%  Similarity=0.056  Sum_probs=67.0

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe---EEEEecCccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ---VSIVLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~---~~~~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..+.+++.++|+++++-.                 .+|.|..++.++++   ...+.......+.++++|+++.|+.+ .
T Consensus        10 ~i~~~~~s~~~~~l~~~~-----------------~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~   71 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICP-----------------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-G   71 (372)
T ss_dssp             CCCEEEECTTSSEEEEEC-----------------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-E
T ss_pred             CeEEEEECCCCCEEEEEe-----------------CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE-c
Confidence            346889999998776642                 25777777776564   22233334556799999999866555 4


Q ss_pred             CCCeEEEEEccCCCcccceEe-eccCCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGDKRDREIF-IENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+.|..|++.....  ...+ ..........+++.++|+++++....
T Consensus        72 ~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  117 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTW--KPTLVILRINRAARCVRWAPNEKKFAVGSGS  117 (372)
T ss_dssp             TTSCEEEEEEETTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCeEEEEECCCCee--eeeEEeecCCCceeEEEECCCCCEEEEEeCC
Confidence            567899998864221  1111 11123456789999999877766554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.90  E-value=0.0017  Score=54.56  Aligned_cols=101  Identities=17%  Similarity=0.213  Sum_probs=66.6

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      .+.+++.++|+..++-.                 .++.|..+|..+++......+ ....+.++++|+++.| ++.+..+
T Consensus       126 v~~v~~s~dg~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~  187 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGA-----------------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDR  187 (393)
T ss_dssp             EEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTS
T ss_pred             EEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEE-EEecCCC
Confidence            56788888988776632                 367788888876665544444 3445799999999855 5555678


Q ss_pred             eEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecC
Q 046107           92 RCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKM  135 (224)
Q Consensus        92 ~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~  135 (224)
                      .|..+++..+.   ..... ........+++.+ +|+++++....
T Consensus       188 ~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d  228 (393)
T 1erj_A          188 TVRIWDLRTGQ---CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLD  228 (393)
T ss_dssp             EEEEEETTTTE---EEEEE-ECSSCEEEEEECSTTCCEEEEEETT
T ss_pred             cEEEEECCCCe---eEEEE-EcCCCcEEEEEECCCCCEEEEEcCC
Confidence            99999986421   11111 1223456778887 78877776655

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.88  E-value=0.00041  Score=59.10  Aligned_cols=105  Identities=14%  Similarity=0.059  Sum_probs=67.5

Q ss_pred             cccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC----eEEEEecCccccceeEEecCCCEEEEE
Q 046107           12 FANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK----QVSIVLEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        12 ~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g----~~~~~~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ..+++++.+ ++.++++..                 .+|.|..+|..++    ....+......++.|+++|+++.++++
T Consensus       233 ~v~~v~~~p~~~~~l~s~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t  295 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVA-----------------DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT  295 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEE-----------------TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             CEeeeEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE
Confidence            356777777 456666642                 3678888887643    122233344567899999999878888


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      ....+.|..|++.... .....+. ........+++.++|. ++++....
T Consensus       296 g~~dg~v~vwd~~~~~-~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d  343 (430)
T 2xyi_A          296 GSADKTVALWDLRNLK-LKLHSFE-SHKDEIFQVQWSPHNETILASSGTD  343 (430)
T ss_dssp             EETTSEEEEEETTCTT-SCSEEEE-CCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             EeCCCeEEEEeCCCCC-CCeEEee-cCCCCEEEEEECCCCCCEEEEEeCC
Confidence            8888999999986421 1122222 1234567899999985 66665554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.87  E-value=0.00034  Score=63.52  Aligned_cols=81  Identities=14%  Similarity=0.133  Sum_probs=52.0

Q ss_pred             eEEEEeCCC-CeEEEEec---CccccceeEEecCCCEEEEEeC----CCCeEEEEEccCCCcccceEeecc-CCC---CC
Q 046107           50 QLLRYDPSS-KQVSIVLE---GLYFANGVALSKHGDFVVVCES----WKFRCIKHWLKLGDKRDREIFIEN-LPG---GP  117 (224)
Q Consensus        50 ~l~~~~~~~-g~~~~~~~---~~~~pngia~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~-~~~---~p  117 (224)
                      .|+.+|.++ ++...+..   .......++| |||++|+++..    ....|+.++++++.   ....... ..+   ..
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~  339 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLH  339 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcC
Confidence            788899877 66554432   2345678999 99998987754    24578888886532   2222211 111   23


Q ss_pred             CceEECCCCCEEEEEec
Q 046107          118 DNINLAPDGSFWISLIK  134 (224)
Q Consensus       118 ~~i~~d~dG~l~va~~~  134 (224)
                      ..+++.+||+++++...
T Consensus       340 ~~~~~spdg~~~~~~~~  356 (741)
T 2ecf_A          340 NSLRFLDDGSILWSSER  356 (741)
T ss_dssp             SCCEECTTSCEEEEECT
T ss_pred             CceEECCCCeEEEEecC
Confidence            68999999996655443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.87  E-value=0.00025  Score=65.13  Aligned_cols=138  Identities=12%  Similarity=0.186  Sum_probs=83.2

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC----ccccceeEEecCCCEEEEEeC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG----LYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~----~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ...+..+++|+||+.-..                 .+.|+++++++++.+.+...    ...++.|..+.+|+ ||++..
T Consensus       474 i~~i~~d~~g~lWi~~~t-----------------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-lWigt~  535 (758)
T 3ott_A          474 INQIIPDNEGNVWVLLYN-----------------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGL-LWVGFH  535 (758)
T ss_dssp             EEEEEECTTSCEEEEETT-----------------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSC-EEEEET
T ss_pred             eeeEEEcCCCCEEEEccC-----------------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCC-EEEEec
Confidence            556888899999992111                 13499999987777665321    23456888898887 999864


Q ss_pred             CCCeEEEEEccCCCcccceEeeccCC-CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENLP-GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                        +.|.+|+++........  .+.++ ....++..+ +|+||++...+                                
T Consensus       536 --~Gl~~~~~~~~~~~~~~--~~gl~~~~i~~i~~~-~g~lWi~t~~G--------------------------------  578 (758)
T 3ott_A          536 --GGVMRINPKDESQQSIS--FGSFSNNEILSMTCV-KNSIWVSTTNG--------------------------------  578 (758)
T ss_dssp             --TEEEEECC--CCCCBCC--CCC---CCEEEEEEE-TTEEEEEESSC--------------------------------
T ss_pred             --CceEEEecCCCceEEec--ccCCCccceEEEEEC-CCCEEEECCCC--------------------------------
Confidence              46999998653221111  11222 234556665 89999997433                                


Q ss_pred             CCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-ECCEEEEEeCC
Q 046107          168 KGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-FQGNLYLASIN  214 (224)
Q Consensus       168 ~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-~~g~lyv~~~~  214 (224)
                            +.+++|+-.....+..+... +.  ..+.. .+|+||+++..
T Consensus       579 ------l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~G~l~fG~~~  617 (758)
T 3ott_A          579 ------LWIIDRKTMDARQQNMTNKR-FT--SLLFDPKEDCVYLGGAD  617 (758)
T ss_dssp             ------EEEEETTTCCEEEC--CCCC-CS--EEEEETTTTEEEEECBS
T ss_pred             ------eEEEcCCCceeEEecCCCCc-ee--eeEEECCCCcEEEecCC
Confidence                  67888875544544444432 22  12223 37999999854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.86  E-value=0.00013  Score=61.19  Aligned_cols=151  Identities=13%  Similarity=-0.005  Sum_probs=89.1

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      ..+.+++.++|+..++-.                 .+|.+..++..+++............-.+++++++.|.++ ...+
T Consensus        58 ~~~~~~~s~~g~~l~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg  119 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKAR-----------------LDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILG-TTEG  119 (420)
T ss_dssp             CCTTCEEEEEETTEEEEE-----------------ETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEE-ETTS
T ss_pred             cccceeeeecCCeEEEEE-----------------cCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEE-ECCC
Confidence            345788888876444421                 2577888887643221112222233344788999855444 5678


Q ss_pred             eEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCce
Q 046107           92 RCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAA  171 (224)
Q Consensus        92 ~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  171 (224)
                      .|..+++...   ..........+....+++.++|++.++....                                    
T Consensus       120 ~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------------------------------------  160 (420)
T 3vl1_A          120 DIKVLDSNFN---LQREIDQAHVSEITKLKFFPSGEALISSSQD------------------------------------  160 (420)
T ss_dssp             CEEEECTTSC---EEEEETTSSSSCEEEEEECTTSSEEEEEETT------------------------------------
T ss_pred             CEEEEeCCCc---ceeeecccccCccEEEEECCCCCEEEEEeCC------------------------------------
Confidence            8999988642   1211211223456889999999977776665                                    


Q ss_pred             EEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          172 AKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       172 ~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      +.|..+|. .++.+..+....+    .++.+... +++++++......|..+++
T Consensus       161 ~~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          161 MQLKIWSVKDGSNPRTLIGHRA----TVTDIAIIDRGRNVLSASLDGTIRLWEC  210 (420)
T ss_dssp             SEEEEEETTTCCCCEEEECCSS----CEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             CeEEEEeCCCCcCceEEcCCCC----cEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence            46667774 4666666654433    35565554 4555555555666766654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.86  E-value=0.0012  Score=54.68  Aligned_cols=100  Identities=13%  Similarity=0.020  Sum_probs=62.8

Q ss_pred             ceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCCCe
Q 046107           15 DVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        15 ~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~~~~   92 (224)
                      ++++.|||+ |+++...               .+...||.+|.++++...+........ +++++|||+.|+++.. ...
T Consensus        40 ~~~~SpDg~~l~~~~~~---------------~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-~~~  103 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAF---------------DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-GRN  103 (388)
T ss_dssp             SCCBCTTSCEEEEEECT---------------TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-TTE
T ss_pred             CccCCCCCCEEEEEEcC---------------CCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-CCe
Confidence            367788885 5555421               123469999998887776655444443 7899999998988874 468


Q ss_pred             EEEEEccCCCcccceEeeccCCCCC--CceEECCCCCEEEEEe
Q 046107           93 CIKHWLKLGDKRDREIFIENLPGGP--DNINLAPDGSFWISLI  133 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~dG~l~va~~  133 (224)
                      |++++++++   +...+.....+..  ....++++|.++++..
T Consensus       104 l~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  143 (388)
T 3pe7_A          104 LMRVDLATL---EENVVYQVPAEWVGYGTWVANSDCTKLVGIE  143 (388)
T ss_dssp             EEEEETTTC---CEEEEEECCTTEEEEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCC---cceeeeechhhcccccceeECCCCCeecccc
Confidence            999998753   2233332111111  1134588998877643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.85  E-value=0.0019  Score=58.92  Aligned_cols=152  Identities=11%  Similarity=0.034  Sum_probs=95.0

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      .....+++.|+|...++-.                 .+|.|..+|..+++....... ......++|+||+++|.++. .
T Consensus        14 ~~v~~i~~sp~~~~la~~~-----------------~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~   75 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTL-----------------YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-D   75 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-T
T ss_pred             CceEEEEECCCCCEEEEEe-----------------CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-C
Confidence            3467899999997665532                 257888888766655444433 34457999999999666654 5


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      .+.|..|+...+.  ....+. ...+....+++.++|...++....                                  
T Consensus        76 dg~i~vw~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d----------------------------------  118 (814)
T 3mkq_A           76 DFRIRVFNYNTGE--KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDD----------------------------------  118 (814)
T ss_dssp             TSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECSSSSEEEEEETT----------------------------------
T ss_pred             CCeEEEEECCCCc--EEEEEe-cCCCCEEEEEEeCCCCEEEEEcCC----------------------------------
Confidence            7899999986421  122221 223456889999999876665554                                  


Q ss_pred             ceEEEEEECCC--CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSAN--GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~~--G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        +.|..++.+  ......+....+    .++.+...  +++++++......|.++++
T Consensus       119 --g~i~vw~~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~  170 (814)
T 3mkq_A          119 --LTVKLWNWENNWALEQTFEGHEH----FVMCVAFNPKDPSTFASGCLDRTVKVWSL  170 (814)
T ss_dssp             --SEEEEEEGGGTSEEEEEEECCSS----CEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred             --CEEEEEECCCCceEEEEEcCCCC----cEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence              345555533  345555544332    35555554  3556666666667776654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.84  E-value=0.0034  Score=52.54  Aligned_cols=156  Identities=12%  Similarity=0.026  Sum_probs=92.3

Q ss_pred             cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cC-ccccceeEEecCCCEEEEEe
Q 046107           12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EG-LYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~-~~~pngia~~~dg~~Lyv~~   87 (224)
                      ..+.+++.++| +++++-.                 .+|.|..+|..+++.....  .. ......++++|+++.|+.+ 
T Consensus       133 ~v~~~~~~p~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  194 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAG-----------------CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS-  194 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEE-----------------TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE-
T ss_pred             eEEEEEECcCCCCEEEEEc-----------------CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE-
Confidence            44567777776 5666532                 3677888887766654444  33 3445799999999855554 


Q ss_pred             CCCCeEEEEEccCCCcccceEeeccCCC-CCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           88 SWKFRCIKHWLKLGDKRDREIFIENLPG-GPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      ...+.|..+++....  ....+.....+ .+..+++.++|+++++......                             
T Consensus       195 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~-----------------------------  243 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS-----------------------------  243 (402)
T ss_dssp             ETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC-----------------------------
T ss_pred             ecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC-----------------------------
Confidence            467899999986421  12222111122 3688999999998877642210                             


Q ss_pred             CCCceEEEEEECCC-Cc-EEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSAN-GS-IIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~~-G~-~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        .  +.|..+|.. ++ ..........   ..++.+..+  +..|+++......|..+++
T Consensus       244 --d--~~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          244 --E--RQVALWDTKHLEEPLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             --C--EEEEEEETTBCSSCSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred             --C--ceEEEEcCccccCCceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence              0  567777754 22 2333332221   124444443  4567777766777777664

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.00056  Score=56.90  Aligned_cols=83  Identities=11%  Similarity=-0.106  Sum_probs=51.9

Q ss_pred             CceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      +|.|..++..+++...... .......++++|++  ++++....+.|..|++....  ....+. ........+++.++|
T Consensus       268 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          268 DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDG  342 (425)
T ss_dssp             TSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTS
T ss_pred             CCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCC
Confidence            5667777765443322222 33445789999998  55555567899999986421  112221 123356789999999


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      +++++....
T Consensus       343 ~~l~~~~~d  351 (425)
T 1r5m_A          343 QKYAVAFMD  351 (425)
T ss_dssp             SEEEEEETT
T ss_pred             CEEEEEECC
Confidence            977776654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.83  E-value=0.00045  Score=57.51  Aligned_cols=103  Identities=14%  Similarity=-0.009  Sum_probs=63.9

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      .+.+++.++|+..++-                 ..+|.|..+|..+++......+ ....+.++++++++.++++....+
T Consensus       142 V~~v~~spdg~~l~sg-----------------s~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg  204 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSG-----------------GKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG  204 (357)
T ss_dssp             EEEEEECSSSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS
T ss_pred             EEEEEECCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC
Confidence            4567777777665553                 2357788888876665444433 445678999999876778877888


Q ss_pred             eEEEEEccCCCcccceEee-ccCCCCCCceEECCCC-CEEEEEec
Q 046107           92 RCIKHWLKLGDKRDREIFI-ENLPGGPDNINLAPDG-SFWISLIK  134 (224)
Q Consensus        92 ~I~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~d~dG-~l~va~~~  134 (224)
                      .|..+++.....  ...+. ......+..+++.+++ .++++...
T Consensus       205 ~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          205 RILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             CEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             ceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeec
Confidence            999998864221  11111 0112345678888875 45554443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.82  E-value=0.0022  Score=53.75  Aligned_cols=82  Identities=9%  Similarity=-0.036  Sum_probs=55.9

Q ss_pred             CceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeC--CCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107           48 HGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      +|.|..+|..+++..... ........++++|+++.++++..  ..+.|..|++....  ....+  ........+++.+
T Consensus       238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--~~~~~--~~~~~v~~~~~s~  313 (401)
T 4aez_A          238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--RVNTV--DAGSQVTSLIWSP  313 (401)
T ss_dssp             TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--EEEEE--ECSSCEEEEEECS
T ss_pred             CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--EEEEE--eCCCcEEEEEECC
Confidence            577888887655544333 33455679999998877877754  68899999986422  11222  1234568999999


Q ss_pred             CCCEEEEEe
Q 046107          125 DGSFWISLI  133 (224)
Q Consensus       125 dG~l~va~~  133 (224)
                      +|...++..
T Consensus       314 ~~~~l~~~~  322 (401)
T 4aez_A          314 HSKEIMSTH  322 (401)
T ss_dssp             SSSEEEEEE
T ss_pred             CCCeEEEEe
Confidence            999877754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.82  E-value=0.00016  Score=64.01  Aligned_cols=73  Identities=12%  Similarity=0.094  Sum_probs=47.3

Q ss_pred             EEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC---CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEE
Q 046107           53 RYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW---KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFW  129 (224)
Q Consensus        53 ~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~---~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~  129 (224)
                      .+|.++++.+.+.....  +.++++|||++|+.+...   ...|+.++++++.   .+.+. ...+....+++.|||+..
T Consensus       136 l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~---~~~l~-~~~~~~~~~~~SpDG~~l  209 (582)
T 3o4h_A          136 LYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG---LRVFD-SGEGSFSSASISPGMKVT  209 (582)
T ss_dssp             EEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---CEEEC-CSSCEEEEEEECTTSCEE
T ss_pred             EEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---ceEee-cCCCccccceECCCCCEE
Confidence            44555666666543322  889999999988755432   2579999987532   33333 223445789999999866


Q ss_pred             EE
Q 046107          130 IS  131 (224)
Q Consensus       130 va  131 (224)
                      ++
T Consensus       210 ~~  211 (582)
T 3o4h_A          210 AG  211 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.82  E-value=0.0029  Score=52.40  Aligned_cols=84  Identities=11%  Similarity=-0.059  Sum_probs=54.4

Q ss_pred             CCceEEEEeCCCCeEEEEecCc---cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEEC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGL---YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLA  123 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~---~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  123 (224)
                      .++.|..+|..+.....+....   .....++++|+++.|+.+ ...+.|..+++.+.   ....+. ........+++.
T Consensus       139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~---~~~~~~-~h~~~v~~~~~~  213 (383)
T 3ei3_B          139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATG-DSTGRLLLLGLDGH---EIFKEK-LHKAKVTHAEFN  213 (383)
T ss_dssp             TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEE-ETTSEEEEEETTSC---EEEEEE-CSSSCEEEEEEC
T ss_pred             CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEE-CCCCCEEEEECCCC---EEEEec-cCCCcEEEEEEC
Confidence            3577777887654444443222   345789999999855554 56789999998542   122222 223456889999


Q ss_pred             CCCC-EEEEEecC
Q 046107          124 PDGS-FWISLIKM  135 (224)
Q Consensus       124 ~dG~-l~va~~~~  135 (224)
                      ++|. ++++....
T Consensus       214 ~~~~~~l~s~~~d  226 (383)
T 3ei3_B          214 PRCDWLMATSSVD  226 (383)
T ss_dssp             SSCTTEEEEEETT
T ss_pred             CCCCCEEEEEeCC
Confidence            9998 66666555

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.81  E-value=0.0012  Score=55.30  Aligned_cols=111  Identities=9%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhH
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNR  149 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~  149 (224)
                      .+.++++|+++.|++ -...+.|..|++....  ....+..........+++.++|. ++++....              
T Consensus       250 v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--------------  312 (420)
T 3vl1_A          250 KNNLEFGTYGKYVIA-GHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN--------------  312 (420)
T ss_dssp             CCTTCSSCTTEEEEE-EETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEETT--------------
T ss_pred             ccceEEcCCCCEEEE-EcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeCC--------------
Confidence            346778899975544 4567889999986421  11122111223567899999998 66665554              


Q ss_pred             HHHHhhchhhHHhhhhcCCCceEEEEEECCC-C-cEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          150 KQLLEEHPELINQLMSTGKGAAAKVVKVSAN-G-SIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G-~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                            +.|..+|.. + +.+..+....+.   .++.+...+++++++......|...++
T Consensus       313 ----------------------g~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          313 ----------------------GMLAQWDLRSPECPVGEFLINEGT---PINNVYFAAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             ----------------------SEEEEEETTCTTSCSEEEEESTTS---CEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred             ----------------------CeEEEEEcCCCcCchhhhhccCCC---CceEEEeCCCCEEEEecCCccEEEEec
Confidence                                  466666653 3 445555442222   355556667788888777777777664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.81  E-value=0.0037  Score=52.45  Aligned_cols=61  Identities=13%  Similarity=0.028  Sum_probs=40.7

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .+.++++|||++|+ +....+.|..+++....  ....+ ..-......+++.++|+..++....
T Consensus       126 v~~v~~s~dg~~l~-s~~~d~~i~iwd~~~~~--~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d  186 (393)
T 1erj_A          126 IRSVCFSPDGKFLA-TGAEDRLIRIWDIENRK--IVMIL-QGHEQDIYSLDYFPSGDKLVSGSGD  186 (393)
T ss_dssp             EEEEEECTTSSEEE-EEETTSCEEEEETTTTE--EEEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCEEE-EEcCCCeEEEEECCCCc--EEEEE-ccCCCCEEEEEEcCCCCEEEEecCC
Confidence            46899999998554 44567899999986421  11222 1222345788999999977776665

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.78  E-value=0.0027  Score=52.16  Aligned_cols=70  Identities=10%  Similarity=-0.030  Sum_probs=46.3

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      .+.+++.++|.+.++-                 ..++.|..+|..+++..... ......+.++++||++.|+ +-...+
T Consensus        79 V~~~~~~~~~~~l~s~-----------------s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~-s~~~d~  140 (343)
T 2xzm_R           79 VSDLALSQENCFAISS-----------------SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAER  140 (343)
T ss_dssp             EEEEEECSSTTEEEEE-----------------ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEE-EEETTS
T ss_pred             eEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEE-EEcCCC
Confidence            4566666777665553                 23677888887656543333 3344557899999998554 445678


Q ss_pred             eEEEEEccC
Q 046107           92 RCIKHWLKL  100 (224)
Q Consensus        92 ~I~~~~~~~  100 (224)
                      .|..+++.+
T Consensus       141 ~i~~wd~~~  149 (343)
T 2xzm_R          141 EIKLWNILG  149 (343)
T ss_dssp             CEEEEESSS
T ss_pred             EEEEEeccC
Confidence            899998864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.78  E-value=0.0012  Score=56.07  Aligned_cols=153  Identities=7%  Similarity=-0.040  Sum_probs=94.6

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe--------EEEEecCccccceeEEecCCCEE
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ--------VSIVLEGLYFANGVALSKHGDFV   83 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~--------~~~~~~~~~~pngia~~~dg~~L   83 (224)
                      ...+++.+++. ++++-.                 .+|.|..++..++.        ...+.......+.++++|++..+
T Consensus       184 v~~l~~~~~~~~~l~s~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  246 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSAS-----------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL  246 (430)
T ss_dssp             CCCEEECTTSTTEEEEEC-----------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTE
T ss_pred             eEEEEeCCCCCCeEEEEe-----------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCE
Confidence            46778887776 655542                 35777777765321        11122233456789999955558


Q ss_pred             EEEeCCCCeEEEEEccCCC-cccceEeeccCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHH
Q 046107           84 VVCESWKFRCIKHWLKLGD-KRDREIFIENLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELIN  161 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  161 (224)
                      +++....+.|..|++.... ......+. .....+..+++.++|. ++++....                          
T Consensus       247 l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~d--------------------------  299 (430)
T 2xyi_A          247 FGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSAD--------------------------  299 (430)
T ss_dssp             EEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETT--------------------------
T ss_pred             EEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCC--------------------------
Confidence            8888888999999997431 11122221 2234578999999987 66665555                          


Q ss_pred             hhhhcCCCceEEEEEECCC--CcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          162 QLMSTGKGAAAKVVKVSAN--GSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       162 ~~~~~~~~~~~~v~~~~~~--G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                +.|..+|..  ++.+..+....+    .++.+...  +..+++++...+.|.++++
T Consensus       300 ----------g~v~vwd~~~~~~~~~~~~~h~~----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          300 ----------KTVALWDLRNLKLKLHSFESHKD----EIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             ----------SEEEEEETTCTTSCSEEEECCSS----CEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             ----------CeEEEEeCCCCCCCeEEeecCCC----CEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence                      456666643  455666654333    35666554  3467888877888887765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.76  E-value=0.00096  Score=55.67  Aligned_cols=105  Identities=15%  Similarity=0.013  Sum_probs=62.7

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCe
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      ...+++.|||++.++-++               ..++.|..+|..+++...........+.++|+|||++|..+.  .+.
T Consensus       136 ~~~v~fSpDg~~la~as~---------------~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s--~~~  198 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASS---------------KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT--GSS  198 (365)
T ss_dssp             EEEEEECTTSSCEEEEES---------------CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC--SSC
T ss_pred             EEEEEEcCCCCEEEEEEC---------------CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc--cee
Confidence            345888889875443211               236778888887776554444455578999999998554443  456


Q ss_pred             EEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           93 CIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +.+++...+.. ...............+++.++|.+.++....
T Consensus       199 ~~~~~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d  240 (365)
T 4h5i_A          199 LEVISTVTGSC-IARKTDFDKNWSLSKINFIADDTVLIAASLK  240 (365)
T ss_dssp             EEEEETTTCCE-EEEECCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred             EEEEEeccCcc-eeeeecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence            77777643211 0011110112235678889999877766544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.76  E-value=0.0025  Score=52.54  Aligned_cols=114  Identities=12%  Similarity=0.049  Sum_probs=66.1

Q ss_pred             eeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE--E-EecC-ccccceeEEec
Q 046107            3 KIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS--I-VLEG-LYFANGVALSK   78 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~--~-~~~~-~~~pngia~~~   78 (224)
                      .++.+.+-.....+++.|+|++.++-.                 .++.|..++..+++..  . +..+ ....+.++++|
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~-----------------~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp   71 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCG-----------------GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP   71 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEE-----------------TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEc-----------------CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC
Confidence            344444333456789999998777632                 2455555554444322  1 2223 33457899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           79 HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        79 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ||++|+. -+..+.|..++.+.........+. .-......+++.++|+++++....
T Consensus        72 ~g~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D  126 (345)
T 3fm0_A           72 CGNYLAS-ASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRD  126 (345)
T ss_dssp             TSSEEEE-EETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEE-EECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECC
Confidence            9985544 455677777776542111112221 122345789999999987776655

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.71  E-value=0.002  Score=56.54  Aligned_cols=155  Identities=10%  Similarity=0.018  Sum_probs=94.4

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      ..+.+++.++|+..++-..             .....+.|+.++.. .....+.......+.++++|+++.++++....+
T Consensus       118 ~v~~~~~s~~~~~l~~~~~-------------~~~~~~~v~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  183 (615)
T 1pgu_A          118 PISDISWDFEGRRLCVVGE-------------GRDNFGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG  183 (615)
T ss_dssp             CEEEEEECTTSSEEEEEEC-------------CSSCSEEEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTT
T ss_pred             cEEEEEEeCCCCEEEEecc-------------CCCCccEEEEEECC-CcceeeecCCccEEEEEECCCCCcEEEEEeCCC
Confidence            4567888888875555321             01124678888843 333333334455679999999985666667788


Q ss_pred             eEEEEEccCCCcccceEeeccCCC---CCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           92 RCIKHWLKLGDKRDREIFIENLPG---GPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        92 ~I~~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                      .|..++.....  ....+. ....   ....+++.++ |+++++....                                
T Consensus       184 ~v~vwd~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------------------------  228 (615)
T 1pgu_A          184 SVVFYQGPPFK--FSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSD--------------------------------  228 (615)
T ss_dssp             EEEEEETTTBE--EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETT--------------------------------
T ss_pred             cEEEEeCCCcc--eeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCC--------------------------------
Confidence            99999975421  112221 1222   4568999999 9877776655                                


Q ss_pred             CCceEEEEEEC-CCCcEEEEE-e---CCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          168 KGAAAKVVKVS-ANGSIIREF-N---DPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       168 ~~~~~~v~~~~-~~G~~~~~~-~---~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                          +.|..+| ..|+.+..+ .   ...    ..++.+...+++++++......|..+++
T Consensus       229 ----g~i~vwd~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~l~~~~~d~~i~~wd~  281 (615)
T 1pgu_A          229 ----RKISCFDGKSGEFLKYIEDDQEPVQ----GGIFALSWLDSQKFATVGADATIRVWDV  281 (615)
T ss_dssp             ----CCEEEEETTTCCEEEECCBTTBCCC----SCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             ----CeEEEEECCCCCEeEEecccccccC----CceEEEEEcCCCEEEEEcCCCcEEEEEC
Confidence                4566677 357777776 3   222    2355555435556666666677776664

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.71  E-value=0.0048  Score=54.04  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=82.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCc-c---ccceeEEecC-CCEEEEEeCCCCeEEEEEccCCCcccceEeec---cCCCCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGL-Y---FANGVALSKH-GDFVVVCESWKFRCIKHWLKLGDKRDREIFIE---NLPGGPD  118 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~-~---~pngia~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~---~~~~~p~  118 (224)
                      .+|.|..+|..+++........ .   ..+.++++|+ +++|+.+ ...+.|..+++....  ....+..   .......
T Consensus       181 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETTTCC--EEEECCBTTBCCCSCEE
T ss_pred             CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCC--EeEEecccccccCCceE
Confidence            3577888887655544433333 3   4678999999 8855555 456889999986422  1122211   1223457


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccc
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISF  197 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~  197 (224)
                      .+++. +|+++++....                                    +.|..+|.. ++.+..+..+....-..
T Consensus       258 ~~~~~-~~~~l~~~~~d------------------------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~  300 (615)
T 1pgu_A          258 ALSWL-DSQKFATVGAD------------------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQ  300 (615)
T ss_dssp             EEEES-SSSEEEEEETT------------------------------------SEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred             EEEEc-CCCEEEEEcCC------------------------------------CcEEEEECCCCcEEEEEcCCCCcccCc
Confidence            88998 88887777665                                    467777754 77777776653222233


Q ss_pred             eeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          198 VTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       198 ~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      +..+...+++..++....+.|..+++
T Consensus       301 ~~~~~~~~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          301 QVGVVATGNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeEEEeCCCCeEEEEECCCCEEEEEC
Confidence            44444334444444445566766654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.0063  Score=48.31  Aligned_cols=128  Identities=15%  Similarity=0.064  Sum_probs=79.9

Q ss_pred             CceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      +|.|..+|.. .....+.. .......++++|++.  +++....+.|..|++....  ....+. ...+....+++.++|
T Consensus       164 d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          164 DKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGD--VLRTYE-GHESFVYCIKLLPNG  237 (313)
T ss_dssp             TSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTS
T ss_pred             CCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchh--hhhhhh-cCCceEEEEEEecCC
Confidence            5667777743 22222222 344557899999986  4455567899999986421  122222 223456889999999


Q ss_pred             CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-
Q 046107          127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-  204 (224)
Q Consensus       127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-  204 (224)
                      .++++.. .                                    +.|..+|. .++....+..+.+    .++.+... 
T Consensus       238 ~l~~~~~-d------------------------------------g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~  276 (313)
T 3odt_A          238 DIVSCGE-D------------------------------------RTVRIWSKENGSLKQVITLPAI----SIWSVDCMS  276 (313)
T ss_dssp             CEEEEET-T------------------------------------SEEEEECTTTCCEEEEEECSSS----CEEEEEECT
T ss_pred             CEEEEec-C------------------------------------CEEEEEECCCCceeEEEeccCc----eEEEEEEcc
Confidence            7555433 3                                    47888884 5888888866543    36666654 


Q ss_pred             CCEEEEEeCCCCeEEEeeC
Q 046107          205 QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~~  223 (224)
                      +++ +++....+.|..+++
T Consensus       277 ~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          277 NGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             TSC-EEEEETTSCEEEEES
T ss_pred             CCC-EEEEeCCCcEEEEeC
Confidence            456 455666778887765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.68  E-value=0.0026  Score=52.37  Aligned_cols=106  Identities=13%  Similarity=0.090  Sum_probs=60.7

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE--EecC-ccccceeEEecCCCEEEEEe
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI--VLEG-LYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~--~~~~-~~~pngia~~~dg~~Lyv~~   87 (224)
                      ...+.+++.++|+..++-.                 .++.+..++.+.+..+.  ...+ ....+.++++|+++ ++++-
T Consensus        62 ~~v~~~~~sp~g~~l~s~s-----------------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~  123 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASAS-----------------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATC  123 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred             CcEEEEEECCCCCEEEEEE-----------------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEE
Confidence            3456777888887666532                 24444444433333222  2233 34457999999998 55555


Q ss_pred             CCCCeEEEEEccCCCccc-ceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           88 SWKFRCIKHWLKLGDKRD-REIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +..+.|..++++...... ...+ .........+++.++|++.++....
T Consensus       124 s~D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A          124 SRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             ETTSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETT
T ss_pred             ECCCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCC
Confidence            567889999886421111 1111 1112345678899999877766554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.0036  Score=51.93  Aligned_cols=130  Identities=12%  Similarity=-0.018  Sum_probs=76.2

Q ss_pred             CceEEEEeCCCCeEEEEecCc-cc---------------cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec
Q 046107           48 HGQLLRYDPSSKQVSIVLEGL-YF---------------ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE  111 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~-~~---------------pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~  111 (224)
                      +|.|..++..+++........ ..               ...+++++++.  +++....+.|..|++....  ....+. 
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~i~~~d~~~~~--~~~~~~-  244 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK--FVIPGPKGAIFVYQITEKT--PTGKLI-  244 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE--EEEECGGGCEEEEETTCSS--CSEEEC-
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE--EEEEcCCCeEEEEEcCCCc--eeeeec-
Confidence            567777777655544332222 22               67899999863  4444567899999986421  122221 


Q ss_pred             cCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCC
Q 046107          112 NLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDP  190 (224)
Q Consensus       112 ~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~  190 (224)
                      ........+++.++|+++++....                                    +.|..+|. .++....+...
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d------------------------------------~~i~i~d~~~~~~~~~~~~~  288 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDD------------------------------------GTLRIWHGGNGNSQNCFYGH  288 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETT------------------------------------SCEEEECSSSBSCSEEECCC
T ss_pred             cCCCceEEEEECCCCCEEEEEcCC------------------------------------CEEEEEECCCCccceEecCC
Confidence            223345789999999877766655                                    45666664 35555665433


Q ss_pred             CCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          191 NAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       191 ~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      .+    .++.+... ++ ++++......|..+++
T Consensus       289 ~~----~i~~~~~~~~~-~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          289 SQ----SIVSASWVGDD-KVISCSMDGSVRLWSL  317 (425)
T ss_dssp             SS----CEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred             Cc----cEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence            22    35555544 34 5555555667766664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.66  E-value=0.00032  Score=63.46  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=63.8

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcc----ccceeEEecCCCEEEEEe
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY----FANGVALSKHGDFVVVCE   87 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~----~pngia~~~dg~~Lyv~~   87 (224)
                      .+..+++.+||+++++.                  .+|.|+.+|.++++...+.....    ....++++|||++|.++.
T Consensus        18 ~~~~~~~spdg~~~~~~------------------~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~   79 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYRE------------------QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSY   79 (723)
T ss_dssp             CCCCCCBSSSSCBCCCC------------------SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred             cccccEEcCCCcEEEEe------------------CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEe
Confidence            35678888899855442                  25689999987777666655433    367899999999887665


Q ss_pred             CC--------CCeEEEEEccCCCcccceEeeccC--CCCCCceEECCCCCEEEE
Q 046107           88 SW--------KFRCIKHWLKLGDKRDREIFIENL--PGGPDNINLAPDGSFWIS  131 (224)
Q Consensus        88 ~~--------~~~I~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~dG~l~va  131 (224)
                      ..        .+.|+.++++++.   .+.+....  ...+..+++.|||+..+.
T Consensus        80 ~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~SPdG~~la~  130 (723)
T 1xfd_A           80 NVEPIYQHSYTGYYVLSKIPHGD---PQSLDPPEVSNAKLQYAGWGPKGQQLIF  130 (723)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCC---CEECCCTTCCSCCCSBCCBCSSTTCEEE
T ss_pred             cCccceeecceeeEEEEECCCCc---eEeccCCccccccccccEECCCCCEEEE
Confidence            32        2688999987633   22222111  112566788888864443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.65  E-value=0.014  Score=46.49  Aligned_cols=116  Identities=10%  Similarity=0.033  Sum_probs=67.4

Q ss_pred             ceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC--eEEE---EecCccccceeEE
Q 046107            2 IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK--QVSI---VLEGLYFANGVAL   76 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g--~~~~---~~~~~~~pngia~   76 (224)
                      ++.+....-...+.+++.++|++.++-.                 .+|.|..++..++  ..+.   +.........+++
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~   65 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCS-----------------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW   65 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEE
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEee-----------------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEE
Confidence            3444444556678999999998766642                 2566656654432  2122   2233445679999


Q ss_pred             ec--CCCEEEEEeCCCCeEEEEEccCCCcc----cceEee--ccCCCCCCceEECCC--CCEEEEEecC
Q 046107           77 SK--HGDFVVVCESWKFRCIKHWLKLGDKR----DREIFI--ENLPGGPDNINLAPD--GSFWISLIKM  135 (224)
Q Consensus        77 ~~--dg~~Lyv~~~~~~~I~~~~~~~~~~~----~~~~~~--~~~~~~p~~i~~d~d--G~l~va~~~~  135 (224)
                      +|  |++ ++++-...+.|..+++......    ..+...  .........+++.++  |++.++....
T Consensus        66 ~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  133 (351)
T 3f3f_A           66 ASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND  133 (351)
T ss_dssp             CCGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cCCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence            99  587 4455556788999988642110    001111  112345678888888  8866665543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.64  E-value=0.0002  Score=59.28  Aligned_cols=105  Identities=12%  Similarity=-0.007  Sum_probs=57.3

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe----EEEEecCccccceeEEecCCCEEEEEeC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ----VSIVLEGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~----~~~~~~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      .+.+++.++|++.++-.                 .+|.|..+|..+++    ...+.......+.++++||++.|+.+. 
T Consensus        58 v~~~~~s~~~~~l~s~s-----------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  119 (377)
T 3dwl_C           58 VTCVDWAPKSNRIVTCS-----------------QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-  119 (377)
T ss_dssp             EEEEEECTTTCCEEEEE-----------------TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-
T ss_pred             EEEEEEeCCCCEEEEEe-----------------CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-
Confidence            45667777776555421                 25666666665443    222233344567899999998555554 


Q ss_pred             CCCeEEEEEccCCCc-ccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGDK-RDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+.|..++++.... .....+..........+++.++|++.++....
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d  167 (377)
T 3dwl_C          120 GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD  167 (377)
T ss_dssp             SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred             cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence            567888888864221 01223321123456789999999877766554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.64  E-value=0.0015  Score=53.00  Aligned_cols=87  Identities=6%  Similarity=-0.014  Sum_probs=54.8

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEec---CCCEEEEEeCCCCeEEEEEccCCC-cccceEe-eccCCCCCCceEE
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSK---HGDFVVVCESWKFRCIKHWLKLGD-KRDREIF-IENLPGGPDNINL  122 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~---dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~-~~~~~~~p~~i~~  122 (224)
                      +|.|..+|..+++...........+.++++|   +++.|+++ ...+.|..|++.... ....... ..........+++
T Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  267 (357)
T 3i2n_A          189 NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH  267 (357)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred             CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence            5788889987676554444455678999999   88866555 567899999986421 1111110 0112335678889


Q ss_pred             CCCCC-EEEEEecC
Q 046107          123 APDGS-FWISLIKM  135 (224)
Q Consensus       123 d~dG~-l~va~~~~  135 (224)
                      .++|. ++++....
T Consensus       268 ~~~~~~~l~~~~~d  281 (357)
T 3i2n_A          268 LPQNRELFLTAGGA  281 (357)
T ss_dssp             ETTEEEEEEEEETT
T ss_pred             CCCCCcEEEEEeCC
Confidence            99988 55554443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.63  E-value=0.0034  Score=52.01  Aligned_cols=135  Identities=12%  Similarity=-0.008  Sum_probs=78.7

Q ss_pred             CCceEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEEC
Q 046107           47 PHGQLLRYDPSSKQVSIVL---EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLA  123 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~---~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  123 (224)
                      .++.|..+|..+++.....   ......+.++++|++..++++-...+.|..+++....  ....+. ........+++.
T Consensus       190 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--~~~~~~-~h~~~v~~v~fs  266 (344)
T 4gqb_B          190 EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--CVLSSA-VHSQCVTGLVFS  266 (344)
T ss_dssp             TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CCEEEE-CCSSCEEEEEEC
T ss_pred             cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--EEEEEc-CCCCCEEEEEEc
Confidence            3567777787655433221   1223457899999766577777778899999986422  122222 122345788999


Q ss_pred             CCCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEE
Q 046107          124 PDGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSAL  202 (224)
Q Consensus       124 ~dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~  202 (224)
                      ++|. +.++....                                    +.|...|.....+..+....    ..++.++
T Consensus       267 p~g~~~lasgs~D------------------------------------~~i~vwd~~~~~~~~~~~H~----~~V~~v~  306 (344)
T 4gqb_B          267 PHSVPFLASLSED------------------------------------CSLAVLDSSLSELFRSQAHR----DFVRDAT  306 (344)
T ss_dssp             SSSSCCEEEEETT------------------------------------SCEEEECTTCCEEEEECCCS----SCEEEEE
T ss_pred             cCCCeEEEEEeCC------------------------------------CeEEEEECCCCcEEEEcCCC----CCEEEEE
Confidence            9985 55544444                                    45666775533333333222    2466666


Q ss_pred             EE--CCEEEEEeCCCCeEEEeeCC
Q 046107          203 EF--QGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       203 ~~--~g~lyv~~~~~~~i~~~~~~  224 (224)
                      ++  +.+|+++......|...+++
T Consensus       307 ~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          307 WSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EeCCCCeEEEEEcCCCeEEEEECC
Confidence            54  45677666667777766553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.63  E-value=0.012  Score=53.50  Aligned_cols=159  Identities=14%  Similarity=0.083  Sum_probs=86.9

Q ss_pred             cccceEEecCCc-EEEE-eCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 046107           12 FANDVIEASDGS-LYIT-VSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...++++.|||+ |.++ +..              +.....|+.+|.++|+.....-....-.+++|+ ||+.||++...
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred             EEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence            455678888885 4333 321              112357889998877654321111113578999 99989887654


Q ss_pred             ------------CCeEEEEEccCCCcccceEeeccC---CCCCCceEECCCCCEE-EEEecCCchhhhhhccChhHHHHH
Q 046107           90 ------------KFRCIKHWLKLGDKRDREIFIENL---PGGPDNINLAPDGSFW-ISLIKMNSSAVETVHSSKNRKQLL  153 (224)
Q Consensus        90 ------------~~~I~~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~dG~l~-va~~~~~~~~~~~~~~~p~~~~~~  153 (224)
                                  ..+|+++++.+.. .+...+....   +..-.++.+++||+.. ++......                
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~----------------  257 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQ-EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS----------------  257 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCG-GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS----------------
T ss_pred             CcccccccccCCCcEEEEEECCCCc-ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC----------------
Confidence                        2568988875432 2222233221   1112367889999844 33332210                


Q ss_pred             hhchhhHHhhhhcCCCceEEEEEECCC---CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCC---CCeEEEeeC
Q 046107          154 EEHPELINQLMSTGKGAAAKVVKVSAN---GSIIREFNDPNAKNISFVTSALEFQGNLYLASIN---SNFIGKLPL  223 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~---~~~i~~~~~  223 (224)
                                     .  +.|+.++.+   +++.. +..+.+.   ....+..+++.||+.+..   ..+|.++++
T Consensus       258 ---------------~--~~i~~~d~~~~~~~~~~-l~~~~~~---~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~  312 (693)
T 3iuj_A          258 ---------------G--NRLYVKDLSQENAPLLT-VQGDLDA---DVSLVDNKGSTLYLLTNRDAPNRRLVTVDA  312 (693)
T ss_dssp             ---------------C--CEEEEEETTSTTCCCEE-EECSSSS---CEEEEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             ---------------C--cEEEEEECCCCCCceEE-EeCCCCc---eEEEEeccCCEEEEEECCCCCCCEEEEEeC
Confidence                           0  467777743   34443 3333222   122244668888877654   356777765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.61  E-value=0.0094  Score=50.31  Aligned_cols=53  Identities=6%  Similarity=-0.053  Sum_probs=36.8

Q ss_pred             CCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .++.|..+|..++..... .......+.+++++|++ ++++.+..+.|..+++..
T Consensus       212 ~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          212 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred             CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCC
Confidence            367788888766654333 33344557899999998 556666778899998864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.60  E-value=0.0015  Score=54.30  Aligned_cols=133  Identities=14%  Similarity=0.108  Sum_probs=79.4

Q ss_pred             CceEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107           48 HGQLLRYDPSSKQVSIVL---EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~---~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      +|.|..+|..+++.....   .....+..++++|++..++++-...+.|..+++....  ....+. ........+++.+
T Consensus       203 dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~-~~~~~v~~l~~sp  279 (357)
T 4g56_B          203 DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSA-VHSQNITGLAYSY  279 (357)
T ss_dssp             TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEEC-CCSSCEEEEEECS
T ss_pred             CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--EeEEEe-ccceeEEEEEEcC
Confidence            456666665544322211   1223456899999866577766677899999986421  122222 2223457889999


Q ss_pred             CCC-EEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEE
Q 046107          125 DGS-FWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSAL  202 (224)
Q Consensus       125 dG~-l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~  202 (224)
                      +|. +.++....                                    +.|...|.+ |+.+..+. ..    ..++.++
T Consensus       280 ~~~~~lasgs~D------------------------------------~~i~iwd~~~~~~~~~~~-H~----~~V~~va  318 (357)
T 4g56_B          280 HSSPFLASISED------------------------------------CTVAVLDADFSEVFRDLS-HR----DFVTGVA  318 (357)
T ss_dssp             SSSCCEEEEETT------------------------------------SCEEEECTTSCEEEEECC-CS----SCEEEEE
T ss_pred             CCCCEEEEEeCC------------------------------------CEEEEEECCCCcEeEECC-CC----CCEEEEE
Confidence            885 44444443                                    456777765 55555442 22    2466776


Q ss_pred             EE--CCEEEEEeCCCCeEEEeeCC
Q 046107          203 EF--QGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       203 ~~--~g~lyv~~~~~~~i~~~~~~  224 (224)
                      +.  +++++++......|.+.+++
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECC
Confidence            54  57777777777888877764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.58  E-value=0.00072  Score=60.52  Aligned_cols=118  Identities=16%  Similarity=0.158  Sum_probs=70.2

Q ss_pred             CccccceeEEecCCCEEEEEeCCC---------------------CeEEEEEccCCCc----ccceEeecc---------
Q 046107           67 GLYFANGVALSKHGDFVVVCESWK---------------------FRCIKHWLKLGDK----RDREIFIEN---------  112 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~---------------------~~I~~~~~~~~~~----~~~~~~~~~---------  112 (224)
                      .+..|.+|.++|....+|++.++.                     ++|+++.+++...    .+.+.+...         
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            356688999998444599998642                     5799999863211    112222210         


Q ss_pred             ------------CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC
Q 046107          113 ------------LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN  180 (224)
Q Consensus       113 ------------~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  180 (224)
                                  ....||||++|++|+||++.-...+..-.+..                        -....++.++++
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~------------------------~gnn~~~~~~~~  517 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAG------------------------MGNNQMLCADPA  517 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTT------------------------TCSCEEEEECTT
T ss_pred             ccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccc------------------------cccceEEEEeCC
Confidence                        01369999999999999997654221111100                        001456667765


Q ss_pred             -CcEEEEEeCCCCCcccceeEEEEE--CCEEEEE
Q 046107          181 -GSIIREFNDPNAKNISFVTSALEF--QGNLYLA  211 (224)
Q Consensus       181 -G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~  211 (224)
                       |++.+.+..|.+.   .+|.+++.  +.+|||.
T Consensus       518 ~g~~~rf~~~P~ga---E~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          518 TGEIRRFMVGPIGC---EVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             TCCEEEEEECCTTC---EEEEEEECTTSSEEEEE
T ss_pred             CCeEEEEEeCCCCc---cCcCeeECCCCCEEEEE
Confidence             6776666666664   45555543  4567765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.58  E-value=0.00073  Score=58.07  Aligned_cols=141  Identities=8%  Similarity=-0.080  Sum_probs=84.9

Q ss_pred             ccceEEecCCcEEE----EeCCCCCCcchhhhhhccCCCCceEEEEeCCCC--------e----EEEEecCccccceeEE
Q 046107           13 ANDVIEASDGSLYI----TVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK--------Q----VSIVLEGLYFANGVAL   76 (224)
Q Consensus        13 ~n~v~~~~~G~ly~----t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g--------~----~~~~~~~~~~pngia~   76 (224)
                      .+.+++.++|+..+    +-                 ..++.|..+|..++        +    ...+.......+.++|
T Consensus        95 v~~l~~spdg~~lav~~~sg-----------------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  157 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSS-----------------EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW  157 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEET-----------------TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEE
T ss_pred             ccEEEEcCCCCEEEEEEecc-----------------CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEE
Confidence            67888989987555    32                 23566666664321        0    1111112345679999


Q ss_pred             ecC-CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhh
Q 046107           77 SKH-GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEE  155 (224)
Q Consensus        77 ~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~  155 (224)
                      +|+ ++ ++++.+..+.|..+++...   ...............+++.++|++.++....                    
T Consensus       158 ~p~~~~-~las~s~Dg~v~iwD~~~~---~~~~~~~~~~~~v~~v~wspdg~~lasgs~d--------------------  213 (434)
T 2oit_A          158 NPTVPS-MVAVCLADGSIAVLQVTET---VKVCATLPSTVAVTSVCWSPKGKQLAVGKQN--------------------  213 (434)
T ss_dssp             CSSCTT-EEEEEETTSCEEEEEESSS---EEEEEEECGGGCEEEEEECTTSSCEEEEETT--------------------
T ss_pred             CCCCCC-EEEEEECCCeEEEEEcCCC---cceeeccCCCCceeEEEEcCCCCEEEEEcCC--------------------
Confidence            998 55 7777777889999998642   1111111112357889999999877766655                    


Q ss_pred             chhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCc---ccceeEEEEECCEEEE
Q 046107          156 HPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKN---ISFVTSALEFQGNLYL  210 (224)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~---~~~~t~~~~~~g~lyv  210 (224)
                                      +.|..+|.+|+....+..+....   ...++.+.+..+..|+
T Consensus       214 ----------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          214 ----------------GTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             ----------------SCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             ----------------CcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence                            56788888887776665432210   1145556666555555

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.56  E-value=0.0019  Score=54.99  Aligned_cols=85  Identities=8%  Similarity=0.027  Sum_probs=53.7

Q ss_pred             CCceEEEEeCCCCeEEEEe--cC-ccccceeEEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeecc--CCCCCCce
Q 046107           47 PHGQLLRYDPSSKQVSIVL--EG-LYFANGVALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN--LPGGPDNI  120 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~--~~-~~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i  120 (224)
                      .+|.|..+|..+++.....  .+ ...-+.|+|+| |++ ++++.+..+.|..+++.+.   ....+...  .......+
T Consensus       140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~-~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~  215 (435)
T 4e54_B          140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN-QFYASSMEGTTRLQDFKGN---ILRVFASSDTINIWFCSL  215 (435)
T ss_dssp             TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT-EEEEECSSSCEEEEETTSC---EEEEEECCSSCSCCCCCE
T ss_pred             CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC-EEEEEeCCCEEEEeeccCC---ceeEEeccCCCCccEEEE
Confidence            4678888887544433222  22 34457999998 676 5666677789999998652   22333321  11234678


Q ss_pred             EECCCCCEEEEEecC
Q 046107          121 NLAPDGSFWISLIKM  135 (224)
Q Consensus       121 ~~d~dG~l~va~~~~  135 (224)
                      +++++|++.++....
T Consensus       216 ~~~~~~~~l~~g~~d  230 (435)
T 4e54_B          216 DVSASSRMVVTGDNV  230 (435)
T ss_dssp             EEETTTTEEEEECSS
T ss_pred             EECCCCCEEEEEeCC
Confidence            899999988776655

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.54  E-value=0.014  Score=48.58  Aligned_cols=138  Identities=7%  Similarity=-0.018  Sum_probs=82.6

Q ss_pred             CCceEEEEeCC-CCe-EEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccC------CCCCC
Q 046107           47 PHGQLLRYDPS-SKQ-VSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENL------PGGPD  118 (224)
Q Consensus        47 ~~g~l~~~~~~-~g~-~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~------~~~p~  118 (224)
                      .+|.|..+|.. +++ +..+.......+.++++||++ .+++-+..+.|..+++..+.  ....+....      .....
T Consensus       226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~  302 (380)
T 3iz6_a          226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVT  302 (380)
T ss_dssp             TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCS
T ss_pred             CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceE
Confidence            35667777754 222 222333344568999999998 66677778899999986421  122221110      11356


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccc
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISF  197 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~  197 (224)
                      .+++.++|++.++....                                    +.|...|. .++....+.......-..
T Consensus       303 ~~~~s~~g~~l~~g~~d------------------------------------g~i~vwd~~~~~~~~~~~~~~~~h~~~  346 (380)
T 3iz6_a          303 SVAFSISGRLLFAGYSN------------------------------------GDCYVWDTLLAEMVLNLGTLQNSHEGR  346 (380)
T ss_dssp             EEEECSSSSEEEEECTT------------------------------------SCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred             EEEECCCCCEEEEEECC------------------------------------CCEEEEECCCCceEEEEecccCCCCCc
Confidence            89999999988886665                                    56777774 466665552211111234


Q ss_pred             eeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          198 VTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       198 ~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      ++.+... +|+.+++......|.+.++
T Consensus       347 v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          347 ISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             CCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             eEEEEECCCCCEEEEeeCCCCEEEEec
Confidence            6666654 5666666666677766654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.54  E-value=0.014  Score=48.24  Aligned_cols=153  Identities=10%  Similarity=0.077  Sum_probs=92.4

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ..+.+++.++|...+|-.                 .+|.|..+|..+++... +.........++++|+|+ ++++-...
T Consensus        66 ~V~~~~~s~d~~~l~s~s-----------------~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d  127 (354)
T 2pbi_B           66 KVLCMDWCKDKRRIVSSS-----------------QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-AIACGGLD  127 (354)
T ss_dssp             CEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS-EEEEESTT
T ss_pred             eEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC-EEEEeeCC
Confidence            456788888887777642                 36888888865554433 333345567999999998 55666678


Q ss_pred             CeEEEEEccCCC----cccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           91 FRCIKHWLKLGD----KRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        91 ~~I~~~~~~~~~----~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      +.|..|++....    ......+. .-......+++.+++...++....                               
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D-------------------------------  175 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASGD-------------------------------  175 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETT-------------------------------
T ss_pred             CCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeCC-------------------------------
Confidence            888888875211    11112221 122345778888988877666655                               


Q ss_pred             CCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEE--E-CCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALE--F-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~--~-~g~lyv~~~~~~~i~~~~~  223 (224)
                           +.|...|. .|+.+..+....+.    ++.+..  . +++++++......|...++
T Consensus       176 -----~~v~lwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          176 -----GTCALWDVESGQLLQSFHGHGAD----VLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             -----SEEEEEETTTCCEEEEEECCSSC----EEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             -----CcEEEEeCCCCeEEEEEcCCCCC----eEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence                 45666664 47777777654332    333332  2 3455555555566666554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.53  E-value=0.0048  Score=50.01  Aligned_cols=111  Identities=6%  Similarity=-0.046  Sum_probs=62.9

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecC---CCEE
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKH---GDFV   83 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~d---g~~L   83 (224)
                      .-...+.+++.++|..+++-.+             ....+|.|..++.++++.....  ........++++|+   |+.|
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s-------------~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l   83 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGN-------------FARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYL   83 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC---------------CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCE
T ss_pred             CCCceEEEEEcCCCceEEEecC-------------ccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceE
Confidence            3446678999998854443211             0012677777776656554332  23345578999998   5745


Q ss_pred             EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCce------EECCCCCEEEEEecC
Q 046107           84 VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNI------NLAPDGSFWISLIKM  135 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i------~~d~dG~l~va~~~~  135 (224)
                      +. -...+.|..+++.... .....+. ........+      ++.++|++.++....
T Consensus        84 ~~-~~~dg~i~iwd~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           84 AT-GDFGGNLHIWNLEAPE-MPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EE-EETTSCEEEECTTSCS-SCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             EE-ecCCCeEEEEeCCCCC-ccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCC
Confidence            44 4567889999986432 0122222 111222333      567888877776655

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.52  E-value=0.00054  Score=56.62  Aligned_cols=105  Identities=9%  Similarity=0.030  Sum_probs=59.4

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE--ecC-ccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV--LEG-LYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~--~~~-~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..+.+++.++|+++++-.                 .+|.|..++..++..+..  ..+ ....+.++++|++++| ++-+
T Consensus        13 ~v~~~~~s~~g~~l~~~~-----------------~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s   74 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTT-----------------ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRI-VTCS   74 (377)
T ss_dssp             CCSCCEECSSSSEEECCC-----------------SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCE-EEEE
T ss_pred             cEEEEEECCCCCEEEEec-----------------CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEE-EEEe
Confidence            456899999998777632                 245454555444432322  222 3345789999999844 4445


Q ss_pred             CCCeEEEEEccCCC-cccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGD-KRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+.|..+++.... ......+. ........+++.++|+++++....
T Consensus        75 ~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d  121 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGA  121 (377)
T ss_dssp             TTSSEEEC------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESS
T ss_pred             CCCeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecC
Confidence            67789999886432 11111221 223456788999999866665554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.52  E-value=0.0051  Score=55.75  Aligned_cols=103  Identities=14%  Similarity=0.011  Sum_probs=59.4

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc--ceeEEecCCCEEEEEeCC
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA--NGVALSKHGDFVVVCESW   89 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p--ngia~~~dg~~Lyv~~~~   89 (224)
                      ..++++.|||+ |.|+...             .+.....|+.+|.++|+... .......  .+++|+|||+.||++...
T Consensus       123 ~~~~~~SPDG~~la~~~~~-------------~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d  188 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKP-------------NAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLP  188 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEE-------------TTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECC-------------CCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEec
Confidence            45677888885 4444321             01223578999988765420 1112222  689999999988777643


Q ss_pred             ------------CCeEEEEEccCCCcccceEeeccC--CCCCCceEECCCCCEEE
Q 046107           90 ------------KFRCIKHWLKLGDKRDREIFIENL--PGGPDNINLAPDGSFWI  130 (224)
Q Consensus        90 ------------~~~I~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~dG~l~v  130 (224)
                                  ..+|+++++.++.... ..+....  +..-.++++++||+..+
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~~~~~~~~~~~~~~~SpDG~~l~  242 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVHERTGDPTTFLQSDLSRDGKYLF  242 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEECCCCCTTCEEEEEECTTSCCEE
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhc-eEEEecCCCCEEEEEEEECCCCCEEE
Confidence                        2459999986532211 2232211  12234788999997443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0033  Score=52.33  Aligned_cols=106  Identities=8%  Similarity=-0.057  Sum_probs=62.8

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC----C-eEEEEecCccccceeEEecC-CCEEEE
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS----K-QVSIVLEGLYFANGVALSKH-GDFVVV   85 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~----g-~~~~~~~~~~~pngia~~~d-g~~Lyv   85 (224)
                      ..+.+++.++|.++++-.                 .+|.|..++..+    . ....+.......+.++++|+ ++ +++
T Consensus        69 ~v~~~~~s~~~~~l~~~~-----------------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~  130 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGAL-----------------DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-VLA  130 (416)
T ss_dssp             CEEEEEECSSSSCEEEEE-----------------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT-BEE
T ss_pred             ceEEEEECCCCCeEEEEc-----------------cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC-EEE
Confidence            345677777776555421                 256677777653    1 22223333445679999998 66 666


Q ss_pred             EeCCCCeEEEEEccCCCcc----cceEe--eccCCCCCCceEECCC-CCEEEEEecC
Q 046107           86 CESWKFRCIKHWLKLGDKR----DREIF--IENLPGGPDNINLAPD-GSFWISLIKM  135 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~----~~~~~--~~~~~~~p~~i~~d~d-G~l~va~~~~  135 (224)
                      +-...+.|..+++......    .....  ..........+++.++ ++++++....
T Consensus       131 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  187 (416)
T 2pm9_A          131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS  187 (416)
T ss_dssp             EECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS
T ss_pred             EEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC
Confidence            6667889999998643200    00011  0112245688999998 6777766555

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.52  E-value=0.0018  Score=52.69  Aligned_cols=104  Identities=12%  Similarity=-0.070  Sum_probs=66.4

Q ss_pred             cccceEEecC----CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-CccccceeEEec-CCCEEEE
Q 046107           12 FANDVIEASD----GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-GLYFANGVALSK-HGDFVVV   85 (224)
Q Consensus        12 ~~n~v~~~~~----G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~-dg~~Lyv   85 (224)
                      ....+++.++    |.++++-                 ..+|.|..+|..+++...... .....+.++++| +++ +++
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~-----------------~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~  132 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVA-----------------GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLL  132 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEE-----------------ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEE
T ss_pred             cEEEEEeccCCCCCCCEEEEe-----------------cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEE
Confidence            3456777776    5555543                 236788888877665444333 345567999999 887 555


Q ss_pred             EeCCCCeEEEEEccCCCcccceEee--ccCCCCCCceEECCCCCEEEEEecC
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFI--ENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~--~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +-...+.|..+++....  ....+.  .........+++.++|+++++....
T Consensus       133 s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  182 (366)
T 3k26_A          133 SVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD  182 (366)
T ss_dssp             EEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeCCCeEEEEEeecCe--EEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence            55567899999986421  122221  1223456889999999877766654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.51  E-value=0.019  Score=46.60  Aligned_cols=70  Identities=14%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      .+.+++.++|+..++-                 ..++.|..+|..+++......+ ....+.++++|+++ ++++-+..+
T Consensus        68 v~~~~~s~dg~~l~s~-----------------s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~  129 (319)
T 3frx_A           68 VQDCTLTADGAYALSA-----------------SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDK  129 (319)
T ss_dssp             EEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTS
T ss_pred             EEEEEECCCCCEEEEE-----------------eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCC
Confidence            3456666666655553                 2367888888776665433333 44457899999998 556666778


Q ss_pred             eEEEEEccC
Q 046107           92 RCIKHWLKL  100 (224)
Q Consensus        92 ~I~~~~~~~  100 (224)
                      .|..+++++
T Consensus       130 ~i~vwd~~~  138 (319)
T 3frx_A          130 TIKVWTIKG  138 (319)
T ss_dssp             CEEEEETTS
T ss_pred             eEEEEECCC
Confidence            899999865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.51  E-value=0.009  Score=49.53  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=72.0

Q ss_pred             CceEEEEeCCCCeEEEEecCc---------c--ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGL---------Y--FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGG  116 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~---------~--~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~  116 (224)
                      .+.|+.+|.++|+........         .  ....++++  ++.||+... .+.|+.++.+.++    ..|.......
T Consensus        62 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~-~g~l~a~d~~tG~----~~W~~~~~~~  134 (376)
T 3q7m_A           62 AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--GGHVYIGSE-KAQVYALNTSDGT----VAWQTKVAGE  134 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--TTEEEEEET-TSEEEEEETTTCC----EEEEEECSSC
T ss_pred             CCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--CCEEEEEcC-CCEEEEEECCCCC----EEEEEeCCCc
Confidence            468999998777654322211         1  11233333  446999864 5789999986432    1232112211


Q ss_pred             CC-ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCc
Q 046107          117 PD-NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKN  194 (224)
Q Consensus       117 p~-~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~  194 (224)
                      .. ...+ .+|.+|++...                                     +.|+.+|+ +|+.+..+..+....
T Consensus       135 ~~~~p~~-~~~~v~v~~~~-------------------------------------g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          135 ALSRPVV-SDGLVLIHTSN-------------------------------------GQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             CCSCCEE-ETTEEEEECTT-------------------------------------SEEEEEETTTCCEEEEEECCC---
T ss_pred             eEcCCEE-ECCEEEEEcCC-------------------------------------CeEEEEECCCCcEEEEEeCCCCce
Confidence            11 2233 36889987543                                     47899996 698887775532210


Q ss_pred             -ccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          195 -ISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       195 -~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                       ....+..+..++.+|++.. +..|..++.
T Consensus       177 ~~~~~~~~~~~~~~v~~g~~-~g~l~~~d~  205 (376)
T 3q7m_A          177 SLRGESAPTTAFGAAVVGGD-NGRVSAVLM  205 (376)
T ss_dssp             --CCCCCCEEETTEEEECCT-TTEEEEEET
T ss_pred             eecCCCCcEEECCEEEEEcC-CCEEEEEEC
Confidence             1111333456889999764 356666653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0063  Score=49.64  Aligned_cols=106  Identities=13%  Similarity=0.145  Sum_probs=62.7

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE--EEecC-ccccceeEEecC--CCEEEE
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS--IVLEG-LYFANGVALSKH--GDFVVV   85 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~--~~~~~-~~~pngia~~~d--g~~Lyv   85 (224)
                      ...+.+++.++|+..++-.                 .+|.|..++..++..+  ....+ ......++++++  ++.|+.
T Consensus        12 ~~v~~~~~s~~~~~l~~~~-----------------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCS-----------------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEE-----------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             ccEEEEEEcCCCCEEEEEE-----------------CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence            4566889999998666632                 2455555554322222  22333 344578999876  775554


Q ss_pred             EeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC--CCEEEEEecC
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD--GSFWISLIKM  135 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d--G~l~va~~~~  135 (224)
                      + ...+.|..+++..........+. ........+++.++  |+++++....
T Consensus        75 ~-~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           75 C-SYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             E-ETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             e-ccCCEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCCEEEEecCC
Confidence            4 45688999988653211112221 12345688999998  8877776655

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.50  E-value=0.0075  Score=48.57  Aligned_cols=86  Identities=12%  Similarity=-0.034  Sum_probs=53.8

Q ss_pred             CCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-
Q 046107           47 PHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-  124 (224)
                      .++.|..+|..+++...... .....+.++++|+++ ++++-+..+.|..+++....  ........-......+++.| 
T Consensus        75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~  151 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPK  151 (304)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTT--EEEEEECCCCSCEEEEEECTT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCc--chhhhhcccCCcEEEEEECCC
Confidence            46778888876665443333 344567999999998 55566677899999986421  11111212223457788888 


Q ss_pred             CCCEEEEEecC
Q 046107          125 DGSFWISLIKM  135 (224)
Q Consensus       125 dG~l~va~~~~  135 (224)
                      ++.++++....
T Consensus       152 ~~~~l~sgs~D  162 (304)
T 2ynn_A          152 DPSTFASGCLD  162 (304)
T ss_dssp             CTTEEEEEETT
T ss_pred             CCCEEEEEeCC
Confidence            56776666555

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.48  E-value=0.0083  Score=48.68  Aligned_cols=157  Identities=10%  Similarity=-0.003  Sum_probs=91.1

Q ss_pred             cccccccceEEecC---C-c-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe-EEEEec-----CccccceeEE
Q 046107            8 HLIRFANDVIEASD---G-S-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ-VSIVLE-----GLYFANGVAL   76 (224)
Q Consensus         8 ~~~~~~n~v~~~~~---G-~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~-~~~~~~-----~~~~pngia~   76 (224)
                      ..-...+.+++.|+   + . ++++.                  ..+.|..++..+++ +..+..     .......+++
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~------------------~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~   77 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATV------------------GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW   77 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEE------------------ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEE
T ss_pred             CCCCceEEEEEecccCCCCceEEEEC------------------CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEe
Confidence            34455678888863   3 2 44443                  23456666654332 222221     1234578999


Q ss_pred             ecC----CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHH
Q 046107           77 SKH----GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQ  151 (224)
Q Consensus        77 ~~d----g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~  151 (224)
                      +|+    |+ ++++-...+.|..|++....  ....+. ........+++.+ +++++++....                
T Consensus        78 ~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~d----------------  137 (366)
T 3k26_A           78 TYDSNTSHP-LLAVAGSRGIIRIINPITMQ--CIKHYV-GHGNAINELKFHPRDPNLLLSVSKD----------------  137 (366)
T ss_dssp             EECTTTCCE-EEEEEETTCEEEEECTTTCC--EEEEEE-SCCSCEEEEEECSSCTTEEEEEETT----------------
T ss_pred             ccCCCCCCC-EEEEecCCCEEEEEEchhce--Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCC----------------
Confidence            998    54 55555567899999986421  122222 2234568899999 88887776665                


Q ss_pred             HHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          152 LLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                                          +.|..+|. .++.+..+..-.+. -..++.+... +++.+++....+.|.++++
T Consensus       138 --------------------g~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  190 (366)
T 3k26_A          138 --------------------HALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLWRI  190 (366)
T ss_dssp             --------------------SCEEEEETTTTEEEEEECSTTSC-SSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             --------------------CeEEEEEeecCeEEEEecccccc-cCceeEEEECCCCCEEEEecCCCCEEEEEC
Confidence                                45666674 46776666321111 1346666654 4555566656677877765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.02  Score=46.76  Aligned_cols=101  Identities=16%  Similarity=0.098  Sum_probs=60.4

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE--EEec-CccccceeEEecCCCEEEEEeCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS--IVLE-GLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~--~~~~-~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      .+.+++.++|.++++-                 ..+|.|..+|..+++..  .+.. .....+.++++|+|++|..+.  
T Consensus       173 i~~~~~~pdg~~lasg-----------------~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--  233 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALY-----------------SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--  233 (343)
T ss_dssp             CCEEEECTTSCEEEEE-----------------CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--
T ss_pred             eEEEEECCCCCEEEEE-----------------cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--
Confidence            4566777777666652                 23677888887655432  2222 234557999999998776666  


Q ss_pred             CCeEEEEEccCCC-cccceEeeccCCCCC---CceEECCCCCEEEEEec
Q 046107           90 KFRCIKHWLKLGD-KRDREIFIENLPGGP---DNINLAPDGSFWISLIK  134 (224)
Q Consensus        90 ~~~I~~~~~~~~~-~~~~~~~~~~~~~~p---~~i~~d~dG~l~va~~~  134 (224)
                      .+.|..+++.... ....+.+.  ....+   ..++++++|++.++...
T Consensus       234 ~~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          234 DQTVVCFDLRKDVGTLAYPTYT--IPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             SSBEEEEETTSSTTCBSSCCCB--C-----CCEEEEECTTSSEEEEEET
T ss_pred             CCeEEEEEcCCCCcceeecccc--cccccccceEEEECCCCCEEEEecC
Confidence            3489999986421 11111110  01122   24999999998887655

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.47  E-value=0.0029  Score=56.42  Aligned_cols=64  Identities=16%  Similarity=0.010  Sum_probs=44.0

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+.++|+|++..++++.+..+.|..++.....  ....+. .-......+++.++|+++++....
T Consensus       148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--~~~~l~-~H~~~V~~v~fspdg~~las~s~D  211 (611)
T 1nr0_A          148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFG-EHTKFVHSVRYNPDGSLFASTGGD  211 (611)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--Eeeeec-cccCceEEEEECCCCCEEEEEECC
Confidence            4457899999987667777788899999864311  112221 222346789999999988877665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.46  E-value=0.0043  Score=56.04  Aligned_cols=70  Identities=20%  Similarity=0.101  Sum_probs=45.6

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKF   91 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~   91 (224)
                      .+++++.++|++.++-                 ..+|.|..+|..+++......+ ......++++|+++ .+++.+..+
T Consensus       433 v~~v~~s~~g~~l~sg-----------------s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~  494 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSG-----------------SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDR  494 (694)
T ss_dssp             EEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTS
T ss_pred             EEEEEECCCCCEEEEE-----------------eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCC
Confidence            3456666666655543                 2367788888766654433333 34457899999998 455556678


Q ss_pred             eEEEEEccC
Q 046107           92 RCIKHWLKL  100 (224)
Q Consensus        92 ~I~~~~~~~  100 (224)
                      .|..++..+
T Consensus       495 ~i~iwd~~~  503 (694)
T 3dm0_A          495 TIKLWNTLG  503 (694)
T ss_dssp             CEEEECTTS
T ss_pred             EEEEEECCC
Confidence            888888754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.44  E-value=0.0087  Score=50.29  Aligned_cols=71  Identities=10%  Similarity=0.002  Sum_probs=43.9

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe------------EEEEecCc----------
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ------------VSIVLEGL----------   68 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~------------~~~~~~~~----------   68 (224)
                      .....+++.++|++.++-.                 .+|.|..++..+++            ...+....          
T Consensus        29 ~~V~~v~~s~~g~~la~g~-----------------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~   91 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGD-----------------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLE   91 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEE-----------------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEE
T ss_pred             CcEEEEEECCCCCEEEEEc-----------------CCCeEEEEEecCCCCCCcccccceeEeccccccccccccccccc
Confidence            4456788889998776632                 25666666654333            22222222          


Q ss_pred             --cccceeEEecCC--CEEEEEeCCCCeEEEEEcc
Q 046107           69 --YFANGVALSKHG--DFVVVCESWKFRCIKHWLK   99 (224)
Q Consensus        69 --~~pngia~~~dg--~~Lyv~~~~~~~I~~~~~~   99 (224)
                        ...+.++++|++  . ++++.+..+.|..+++.
T Consensus        92 ~~~~V~~l~~~~~~~~~-~l~s~s~d~~i~iw~~~  125 (447)
T 3dw8_B           92 IEEKINKIRWLPQKNAA-QFLLSTNDKTIKLWKIS  125 (447)
T ss_dssp             ECCCCCEEEECCCCSSS-EEEEEECSSCEEEEEEE
T ss_pred             ccCceEEEEEcCCCCcc-eEEEeCCCCeEEEEecc
Confidence              446789999998  5 44454667888888875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.44  E-value=0.014  Score=48.27  Aligned_cols=125  Identities=14%  Similarity=0.156  Sum_probs=77.1

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CC-CCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LP-GGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~-~~p~~i~~d~d  125 (224)
                      .|.|+.+|+++|+..... ......+++++  ++.||++.. .+.|+.+++++++    ..|... .. ......++. +
T Consensus       248 ~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~-~  318 (376)
T 3q7m_A          248 NGNLTALDLRSGQIMWKR-ELGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDGGV----TLWTQSDLLHRLLTSPVLY-N  318 (376)
T ss_dssp             TSCEEEEETTTCCEEEEE-CCCCEEEEEEE--TTEEEEEET-TCCEEEEETTTCC----EEEEECTTTTSCCCCCEEE-T
T ss_pred             CcEEEEEECCCCcEEeec-cCCCCCCceEE--CCEEEEEcC-CCeEEEEECCCCc----EEEeecccCCCcccCCEEE-C
Confidence            578999998777654322 23334455554  456999875 5689999986432    133221 11 122334443 5


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      |.+|++...                                     +.++.+|+ +|+.+..+..+.+..   .+..+..
T Consensus       319 ~~l~v~~~~-------------------------------------g~l~~~d~~tG~~~~~~~~~~~~~---~~~~~~~  358 (376)
T 3q7m_A          319 GNLVVGDSE-------------------------------------GYLHWINVEDGRFVAQQKVDSSGF---QTEPVAA  358 (376)
T ss_dssp             TEEEEECTT-------------------------------------SEEEEEETTTCCEEEEEECCTTCB---CSCCEEE
T ss_pred             CEEEEEeCC-------------------------------------CeEEEEECCCCcEEEEEecCCCcc---eeCCEEE
Confidence            889998654                                     47889995 599888776543321   2233457


Q ss_pred             CCEEEEEeCCCCeEEEee
Q 046107          205 QGNLYLASINSNFIGKLP  222 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~  222 (224)
                      +++||+++.. ..|..++
T Consensus       359 ~~~l~v~~~~-G~l~~~~  375 (376)
T 3q7m_A          359 DGKLLIQAKD-GTVYSIT  375 (376)
T ss_dssp             TTEEEEEBTT-SCEEEEE
T ss_pred             CCEEEEEeCC-CEEEEEe
Confidence            8999999875 4565554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.43  E-value=0.0065  Score=50.20  Aligned_cols=118  Identities=16%  Similarity=0.092  Sum_probs=71.1

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc---C---CCCCCceEECCCCCEEEEEecCCchhhh
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN---L---PGGPDNINLAPDGSFWISLIKMNSSAVE  141 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~---~---~~~p~~i~~d~dG~l~va~~~~~~~~~~  141 (224)
                      ......++++|++  ++++....+.|..|++....  ....+. .   .   ......++++++|+++++....+.    
T Consensus       186 ~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~-~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~----  256 (397)
T 1sq9_A          186 SQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFE-SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS----  256 (397)
T ss_dssp             CCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEE-CCC---CCCCCEEEEEECSSTTEEEEEEEETT----
T ss_pred             CCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEe-ccccccccCCccceEEECCCCCEEEEEecCCC----
Confidence            4556799999998  55555677899999986421  112221 1   1   345688999999987766554310    


Q ss_pred             hhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCC---------CcccceeEEEEE-CCEEEE
Q 046107          142 TVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNA---------KNISFVTSALEF-QGNLYL  210 (224)
Q Consensus       142 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g---------~~~~~~t~~~~~-~g~lyv  210 (224)
                                                   .+.|..+|. .++.+..+..+..         ..-..++.+... ++++++
T Consensus       257 -----------------------------~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  307 (397)
T 1sq9_A          257 -----------------------------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  307 (397)
T ss_dssp             -----------------------------EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             -----------------------------CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence                                         046677774 5777777654100         001245566554 455666


Q ss_pred             EeCCCCeEEEeeC
Q 046107          211 ASINSNFIGKLPL  223 (224)
Q Consensus       211 ~~~~~~~i~~~~~  223 (224)
                      +....+.|.++++
T Consensus       308 ~~~~dg~i~iwd~  320 (397)
T 1sq9_A          308 SAGWDGKLRFWDV  320 (397)
T ss_dssp             EEETTSEEEEEET
T ss_pred             EEeCCCeEEEEEc
Confidence            6666777877765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.43  E-value=0.012  Score=53.66  Aligned_cols=133  Identities=9%  Similarity=0.017  Sum_probs=77.0

Q ss_pred             CceEEEEeCCCC-eEEEEec-CccccceeEEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107           48 HGQLLRYDPSSK-QVSIVLE-GLYFANGVALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g-~~~~~~~-~~~~pngia~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      +|.|..++.+++ ....... .......++++| +++ ++++.+..+.|..+++....  ....+..........+++.+
T Consensus       118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~  194 (814)
T 3mkq_A          118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYP  194 (814)
T ss_dssp             TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSS--CSEEEECCCTTCCCEEEECC
T ss_pred             CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc--ceeEEecCCCCCEEEEEEEE
Confidence            566766775543 3333333 334567899999 665 55666677899999986422  12222222224567888888


Q ss_pred             --CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEE
Q 046107          125 --DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSA  201 (224)
Q Consensus       125 --dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~  201 (224)
                        +|.++++....                                    +.|..+|. .++.+..+....+    .++.+
T Consensus       195 ~~~~~~l~~~~~d------------------------------------g~i~~~d~~~~~~~~~~~~~~~----~v~~~  234 (814)
T 3mkq_A          195 LPDKPYMITASDD------------------------------------LTIKIWDYQTKSCVATLEGHMS----NVSFA  234 (814)
T ss_dssp             STTCCEEEEECTT------------------------------------SEEEEEETTTTEEEEEEECCSS----CEEEE
T ss_pred             CCCCCEEEEEeCC------------------------------------CEEEEEECCCCcEEEEEcCCCC----CEEEE
Confidence              88877776655                                    45666663 4666666654332    34555


Q ss_pred             EEE-CCEEEEEeCCCCeEEEeeC
Q 046107          202 LEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       202 ~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                      +.+ ++++.++......|..+++
T Consensus       235 ~~~~~~~~l~~~~~dg~v~vwd~  257 (814)
T 3mkq_A          235 VFHPTLPIIISGSEDGTLKIWNS  257 (814)
T ss_dssp             EECSSSSEEEEEETTSCEEEEET
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEC
Confidence            443 3444444445555655543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.42  E-value=0.002  Score=58.27  Aligned_cols=93  Identities=16%  Similarity=0.088  Sum_probs=61.3

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccc----cceeEEecCCCEEEEEeC-
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF----ANGVALSKHGDFVVVCES-   88 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~----pngia~~~dg~~Lyv~~~-   88 (224)
                      -++++.+||.++++.                  .++.|+.++.++++...+......    ...+++||||++|+++.. 
T Consensus        19 ~~~~~s~dg~~~~~~------------------~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~   80 (719)
T 1z68_A           19 FFPNWISGQEYLHQS------------------ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDY   80 (719)
T ss_dssp             CCCEESSSSEEEEEC------------------TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEE
T ss_pred             CccEECCCCeEEEEc------------------CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecC
Confidence            378888999766653                  257899999987877766544333    678999999998876653 


Q ss_pred             -------CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCE
Q 046107           89 -------WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF  128 (224)
Q Consensus        89 -------~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l  128 (224)
                             ..+.|+.++++++..-....+    ......+++.|||+.
T Consensus        81 ~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~  123 (719)
T 1z68_A           81 SKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSK  123 (719)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTC
T ss_pred             ceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCCE
Confidence                   146899999876322000111    223456677777753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.42  E-value=0.03  Score=46.71  Aligned_cols=83  Identities=12%  Similarity=0.008  Sum_probs=50.8

Q ss_pred             CceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      +|.|..+|..+++...... .......++++  ++ ++++....+.|..+++.... .....+. ...+....+++.++|
T Consensus       155 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~  229 (401)
T 4aez_A          155 NGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIAN-HQIGTLQ-GHSSEVCGLAWRSDG  229 (401)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSS-CEEEEEE-CCSSCEEEEEECTTS
T ss_pred             CCeEEEEECcCCeEEEEecCCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCc-ceeeEEc-CCCCCeeEEEEcCCC
Confidence            5677778876555433332 33444677774  45 45555567899999986311 1122222 233456889999999


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      +++++....
T Consensus       230 ~~l~s~~~d  238 (401)
T 4aez_A          230 LQLASGGND  238 (401)
T ss_dssp             SEEEEEETT
T ss_pred             CEEEEEeCC
Confidence            987776655

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.015  Score=46.05  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=59.9

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...+.+++ ++|..+++-.                 .+|.|..++.++++.... .......+.++++|+++.|+++. .
T Consensus        19 ~~v~~~~~-~~~~~l~s~~-----------------~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~   79 (313)
T 3odt_A           19 QDVRDVVA-VDDSKVASVS-----------------RDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG-K   79 (313)
T ss_dssp             SCEEEEEE-EETTEEEEEE-----------------TTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE-T
T ss_pred             CCcEEEEe-cCCCEEEEEE-----------------cCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec-C
Confidence            34567777 7776655532                 367777777665554433 33455567999999999665554 5


Q ss_pred             CCeEEEEEccCCCccc-ceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           90 KFRCIKHWLKLGDKRD-REIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .+.|..+++....... ...+. ........+++  +++++++....
T Consensus        80 dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d  123 (313)
T 3odt_A           80 DTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGSWD  123 (313)
T ss_dssp             TSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CCeEEEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEeCC
Confidence            6788888876422111 12221 12233456666  46666655554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.41  E-value=0.0073  Score=49.12  Aligned_cols=76  Identities=9%  Similarity=-0.001  Sum_probs=51.5

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC----CCCeEEEEEccCCCcccceEeeccCCCCCCceEEC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLA  123 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  123 (224)
                      .+.||.++.++++...+    .....++++|||++|+++..    ....|+.++++++   +...+.. .+. ...+++.
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---~~~~l~~-~~~-~~~~~ws  112 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL---SSKKILE-AKN-IRSLEWN  112 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT---EEEEEEE-ESE-EEEEEEC
T ss_pred             cceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC---ceEEEEc-CCC-ccceeEC
Confidence            56799999887766555    45678999999998866653    2345898988753   2223322 223 6788999


Q ss_pred             CCCC-EEEEE
Q 046107          124 PDGS-FWISL  132 (224)
Q Consensus       124 ~dG~-l~va~  132 (224)
                      +||+ |+++.
T Consensus       113 pdg~~l~~~~  122 (347)
T 2gop_A          113 EDSRKLLIVG  122 (347)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9997 44443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.41  E-value=0.0031  Score=51.02  Aligned_cols=104  Identities=15%  Similarity=-0.040  Sum_probs=66.3

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe----EEEEecCccccceeEEecCCC-EE
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ----VSIVLEGLYFANGVALSKHGD-FV   83 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~----~~~~~~~~~~pngia~~~dg~-~L   83 (224)
                      +-.....+++.++|.+.++-.                 .+|.|..++.++++    ...........+.++++|+++ .|
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~-----------------~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l   72 (342)
T 1yfq_A           10 PKDYISDIKIIPSKSLLLITS-----------------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEE-----------------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEc-----------------CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEE
Confidence            345567899999987666532                 24666555544344    333344445567999999998 67


Q ss_pred             EEEeCCCCeEEEEEc-cCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecC
Q 046107           84 VVCESWKFRCIKHWL-KLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        84 yv~~~~~~~I~~~~~-~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +.+. ..+.|..|++ .+..   ...+. .  .......+++.+ ++++++....
T Consensus        73 ~~~~-~dg~i~~wd~~~~~~---~~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d  121 (342)
T 1yfq_A           73 YVGT-VQGEILKVDLIGSPS---FQALT-NNEANLGICRICKYG-DDKLIAASWD  121 (342)
T ss_dssp             EEEE-TTSCEEEECSSSSSS---EEECB-SCCCCSCEEEEEEET-TTEEEEEETT
T ss_pred             EEEc-CCCeEEEEEeccCCc---eEecc-ccCCCCceEEEEeCC-CCEEEEEcCC
Confidence            6665 5678999998 6532   22222 2  223457888888 7777766655

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.41  E-value=0.016  Score=52.93  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=58.0

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK-   90 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~-   90 (224)
                      ..++++.|||+ |.++...             .+.....|+.+|.++|+............+++|+|| +.||++.... 
T Consensus       165 ~~~~~~SPDG~~la~~~~~-------------~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~  230 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQD-------------GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEP  230 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEE-------------TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC
T ss_pred             EEeEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCc
Confidence            45677888885 4444211             011124699999887765432111111258999999 8888876433 


Q ss_pred             ------------CeEEEEEccCCCcccceEeeccCCC---CCCceEECCCCCEEE
Q 046107           91 ------------FRCIKHWLKLGDKRDREIFIENLPG---GPDNINLAPDGSFWI  130 (224)
Q Consensus        91 ------------~~I~~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~dG~l~v  130 (224)
                                  .+|+++++.++.... ..+... +.   ...++.+++||+..+
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~-~~~~~~~~~~~~SpDG~~l~  283 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFAT-PELPKRGHGASVSSDGRWVV  283 (741)
T ss_dssp             --------CCCCCEEEEEETTSCGGGC-EEEECC-TTCTTCEEEEEECTTSCEEE
T ss_pred             ccccccccCCCCCEEEEEECCCCchhC-EEEecc-CCCCeEEEEEEECCCCCEEE
Confidence                        358888875432111 223322 22   234788999997433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.40  E-value=0.0052  Score=54.80  Aligned_cols=86  Identities=16%  Similarity=0.057  Sum_probs=51.0

Q ss_pred             CceEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC-CCcccceEeeccCCCCCCceEECC
Q 046107           48 HGQLLRYDPSSKQVSIV--LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL-GDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~--~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      ++.|..++.++++....  .......+.++|+|||++|. +....+.|..++... ....... ....-......+++.+
T Consensus       469 D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~la-s~s~d~~v~~w~~~~~~~~~~~~-~~~~H~~~V~~v~fsp  546 (611)
T 1nr0_A          469 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV-ATDQSRKVIPYSVANNFELAHTN-SWTFHTAKVACVSWSP  546 (611)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSCEEEEEGGGTTEESCCC-CCCCCSSCEEEEEECT
T ss_pred             CCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEE-EEcCCCCEEEEEcCCCCceeeee-eeeecccceeEEEECC
Confidence            55565555544443322  22234467899999999554 445677899998864 2110000 1110123457899999


Q ss_pred             CCCEEEEEecC
Q 046107          125 DGSFWISLIKM  135 (224)
Q Consensus       125 dG~l~va~~~~  135 (224)
                      ||++.++....
T Consensus       547 dg~~lasgs~D  557 (611)
T 1nr0_A          547 DNVRLATGSLD  557 (611)
T ss_dssp             TSSEEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            99988887665

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.38  E-value=0.018  Score=46.75  Aligned_cols=85  Identities=12%  Similarity=0.078  Sum_probs=50.5

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCC-----EEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEE
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGD-----FVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINL  122 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~-----~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  122 (224)
                      ++.|..+|.++.....+.........+++.|.++     .++++....+.|..+++....  ....+. ........+++
T Consensus       128 D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~  204 (319)
T 3frx_A          128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTA  204 (319)
T ss_dssp             TSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEE
T ss_pred             CCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEE
Confidence            5666667765433333333334456788887432     256666678899999986421  111221 12234578999


Q ss_pred             CCCCCEEEEEecC
Q 046107          123 APDGSFWISLIKM  135 (224)
Q Consensus       123 d~dG~l~va~~~~  135 (224)
                      .++|++.++....
T Consensus       205 sp~g~~l~s~~~d  217 (319)
T 3frx_A          205 SPDGTLIASAGKD  217 (319)
T ss_dssp             CTTSSEEEEEETT
T ss_pred             cCCCCEEEEEeCC
Confidence            9999988877665

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.38  E-value=0.027  Score=46.46  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=53.6

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEec--CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEEC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSK--HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLA  123 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~--dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  123 (224)
                      .++.|..+|..+++......+ ......++++|  +|+ ++++-+..+.|..+++..+.  ....+. ........+++.
T Consensus       174 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~  249 (354)
T 2pbi_B          174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQ--CVQAFE-THESDVNSVRYY  249 (354)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC-EEEEEETTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEEC
T ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCc--EEEEec-CCCCCeEEEEEe
Confidence            467888888776655433333 33345778876  566 55555677899999986422  122221 222345788999


Q ss_pred             CCCCEEEEEecC
Q 046107          124 PDGSFWISLIKM  135 (224)
Q Consensus       124 ~dG~l~va~~~~  135 (224)
                      ++|+++++....
T Consensus       250 p~~~~l~s~s~D  261 (354)
T 2pbi_B          250 PSGDAFASGSDD  261 (354)
T ss_dssp             TTSSEEEEEETT
T ss_pred             CCCCEEEEEeCC
Confidence            999987776655

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.37  E-value=0.017  Score=55.52  Aligned_cols=152  Identities=7%  Similarity=-0.045  Sum_probs=88.9

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...+.+++.++|++.++-.                 .+|.|..++..+++......+ ......++++|||++|..+ +.
T Consensus       616 ~~v~~~~~s~~~~~l~s~~-----------------~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~  677 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCG-----------------ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATC-SA  677 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ET
T ss_pred             ccEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEE-eC
Confidence            4456778888887766632                 367788888776654433333 4455789999999855544 56


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC--CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD--GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d--G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                      .+.|..+++..+.  ....+. ........+++.++  +.+.++....                                
T Consensus       678 d~~v~vwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d--------------------------------  722 (1249)
T 3sfz_A          678 DKKVKIWDSATGK--LVHTYD-EHSEQVNCCHFTNKSNHLLLATGSND--------------------------------  722 (1249)
T ss_dssp             TSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECSSSSCCEEEEEETT--------------------------------
T ss_pred             CCeEEEEECCCCc--eEEEEc-CCCCcEEEEEEecCCCceEEEEEeCC--------------------------------
Confidence            7899999986432  122222 22234567788774  3455554444                                


Q ss_pred             CCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          168 KGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       168 ~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                          +.|...|. .|+....+....+    .++.++.. +++..++......|...++
T Consensus       723 ----~~v~vwd~~~~~~~~~~~~h~~----~v~~~~~sp~~~~l~s~s~dg~v~vwd~  772 (1249)
T 3sfz_A          723 ----FFLKLWDLNQKECRNTMFGHTN----SVNHCRFSPDDELLASCSADGTLRLWDV  772 (1249)
T ss_dssp             ----SCEEEEETTSSSEEEEECCCSS----CEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred             ----CeEEEEECCCcchhheecCCCC----CEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence                34555553 3566555543332    35555443 4555555555566665543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.02  Score=46.68  Aligned_cols=65  Identities=14%  Similarity=0.046  Sum_probs=41.3

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccC-CCccc-ceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKL-GDKRD-REIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~-~~~~~-~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+.++++|+|+ ++++-+..+.|..+++.. ....+ ...+. .-......+++.++|+++++....
T Consensus       108 ~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D  174 (330)
T 2hes_X          108 NEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEALLASSSYD  174 (330)
T ss_dssp             -CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCCCCEEEEEcCC
Confidence            4457899999998 445555678899999842 11111 12221 122345788999999988777665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.35  E-value=0.03  Score=45.26  Aligned_cols=103  Identities=14%  Similarity=-0.036  Sum_probs=64.7

Q ss_pred             ccccceEEecC---CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-Ce-E-EEEecCccccceeEEecCCCEEE
Q 046107           11 RFANDVIEASD---GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-KQ-V-SIVLEGLYFANGVALSKHGDFVV   84 (224)
Q Consensus        11 ~~~n~v~~~~~---G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g~-~-~~~~~~~~~pngia~~~dg~~Ly   84 (224)
                      ...+.+++.++   |++.++-.                 .+|.|..++.++ +. . ..+.......+.++++|++++|+
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~-----------------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGS-----------------WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEE-----------------TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CceEEEEEcCCCCCceEEEEEC-----------------CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            45578888887   56655532                 256666666543 32 2 22333455567999999998565


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEE--CCCCCEEEEEecC
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINL--APDGSFWISLIKM  135 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--d~dG~l~va~~~~  135 (224)
                      .+ ...+.|..+++....   ...+. ........+++  .++|+++++....
T Consensus       103 s~-~~dg~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d  150 (368)
T 3mmy_A          103 TA-SCDKTAKMWDLSSNQ---AIQIA-QHDAPVKTIHWIKAPNYSCVMTGSWD  150 (368)
T ss_dssp             EE-ETTSEEEEEETTTTE---EEEEE-ECSSCEEEEEEEECSSCEEEEEEETT
T ss_pred             EE-cCCCcEEEEEcCCCC---ceeec-cccCceEEEEEEeCCCCCEEEEccCC
Confidence            54 467899999987532   11122 22345678888  8899877776665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.32  E-value=0.0057  Score=51.18  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=62.9

Q ss_pred             cccccceEE--ec-CCc--EEEEeCCCCCCcchhhhhhccCCCCceEEE--EeC-CCCeEE--EE--ecCccccceeEEe
Q 046107           10 IRFANDVIE--AS-DGS--LYITVSSTKFAPKAYYLDLVEGEPHGQLLR--YDP-SSKQVS--IV--LEGLYFANGVALS   77 (224)
Q Consensus        10 ~~~~n~v~~--~~-~G~--ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~-~~g~~~--~~--~~~~~~pngia~~   77 (224)
                      +..|.++++  ++ .|.  +|+++                  .+|.+.+  +.. ..|+++  .+  ......|.|++++
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~------------------k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvD  188 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTG------------------KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAAD  188 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEEC------------------SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             CCCeeEEEEEecCCCCcEEEEEEC------------------CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEc
Confidence            578888998  65 354  55554                  2355544  432 223222  11  3345678899999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCcccceEeec----cCCCCCCceEEC--CCCC--EEEEEecC
Q 046107           78 KHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE----NLPGGPDNINLA--PDGS--FWISLIKM  135 (224)
Q Consensus        78 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~----~~~~~p~~i~~d--~dG~--l~va~~~~  135 (224)
                      +...+|||++-..+ ||+|+.+.....+.+.+..    .+...+.||++.  ++|+  +++++.+.
T Consensus       189 d~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          189 DEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             TTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             CCCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            98889999998754 9999965221111122211    122368999994  4444  66666555

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.32  E-value=0.021  Score=47.88  Aligned_cols=107  Identities=10%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-CeEEEEe--------cCccccceeEEecC
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-KQVSIVL--------EGLYFANGVALSKH   79 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-g~~~~~~--------~~~~~pngia~~~d   79 (224)
                      .-...+.+++.++|+++++- .                 +|.|..+|... ++.....        ......+.++++|+
T Consensus       176 h~~~v~~~~~~~~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  237 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN  237 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred             CCcceEEEEEcCCCCEEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCC
Confidence            34456788888998877773 2                 57788888752 2221111        12334578999999


Q ss_pred             C-CEEEEEeCCCCeEEEEEccCCCcc--cceEeeccCC-----------CCCCceEECCCCCEEEEEec
Q 046107           80 G-DFVVVCESWKFRCIKHWLKLGDKR--DREIFIENLP-----------GGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        80 g-~~Lyv~~~~~~~I~~~~~~~~~~~--~~~~~~~~~~-----------~~p~~i~~d~dG~l~va~~~  134 (224)
                      + + ++++-+..+.|..|++......  ....+.....           +....+++.++|++.++...
T Consensus       238 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          238 SCN-TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             CTT-EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             CCc-EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            8 6 5556567789999998643211  1233321110           14578999999998777655

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.27  E-value=0.0014  Score=58.74  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             ccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEE
Q 046107            7 CHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG--LYFANGVALSKHGDFVV   84 (224)
Q Consensus         7 ~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~--~~~pngia~~~dg~~Ly   84 (224)
                      ...|..|..|+++++|+||++.....-..+.     ........++.+++.+++++.+...  .....|++++||+++||
T Consensus       472 ~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~-----~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlf  546 (592)
T 3zwu_A          472 QNMFNSPDGLGFDKAGRLWILTDGDSSNAGD-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             TTCCCCEEEEEECTTCCEEEEECCCCCCSGG-----GTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CCCccCCcceEECCCCCEEEEecCCCccccc-----ccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEE
Confidence            3458899999999999999987642111111     1123456789999988898888654  34557999999999999


Q ss_pred             EEe
Q 046107           85 VCE   87 (224)
Q Consensus        85 v~~   87 (224)
                      |+-
T Consensus       547 vni  549 (592)
T 3zwu_A          547 VGI  549 (592)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.27  E-value=0.017  Score=47.46  Aligned_cols=88  Identities=14%  Similarity=0.034  Sum_probs=53.5

Q ss_pred             CCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee--------------c
Q 046107           47 PHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI--------------E  111 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~--------------~  111 (224)
                      ..|.|..+|..+++...... .......++++|+++.++++....+.|..|++..... ....+.              .
T Consensus       164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~  242 (408)
T 4a11_B          164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANT  242 (408)
T ss_dssp             SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSC
T ss_pred             CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccc
Confidence            35667777765444332333 3344578999999987777777788999999863210 011110              0


Q ss_pred             cCCCCCCceEECCCCCEEEEEecC
Q 046107          112 NLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus       112 ~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ........+++.++|+++++....
T Consensus       243 ~~~~~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          243 AHNGKVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccCceeEEEEcCCCCEEEEecCC
Confidence            112345788999999866665544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.045  Score=44.45  Aligned_cols=87  Identities=10%  Similarity=-0.009  Sum_probs=49.8

Q ss_pred             CceEEEEeCCCCe---EEEEecCccccceeEEec-------------CCCEEEEEeCCCCeEEEEEccCCCcc-cceEee
Q 046107           48 HGQLLRYDPSSKQ---VSIVLEGLYFANGVALSK-------------HGDFVVVCESWKFRCIKHWLKLGDKR-DREIFI  110 (224)
Q Consensus        48 ~g~l~~~~~~~g~---~~~~~~~~~~pngia~~~-------------dg~~Lyv~~~~~~~I~~~~~~~~~~~-~~~~~~  110 (224)
                      +|.|..+|...+.   ...+.......+.++++|             |++ ++++....+.|..|++...... ......
T Consensus       124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  202 (379)
T 3jrp_A          124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTL  202 (379)
T ss_dssp             TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred             CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEE
Confidence            5667677765331   112223344457899999             677 4455556788999988642211 111111


Q ss_pred             ccCCCCCCceEECCC---CCEEEEEecC
Q 046107          111 ENLPGGPDNINLAPD---GSFWISLIKM  135 (224)
Q Consensus       111 ~~~~~~p~~i~~d~d---G~l~va~~~~  135 (224)
                      .........+++.++   |+++++....
T Consensus       203 ~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          203 EGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             CCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             ecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            112234678999999   7777666554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.24  E-value=0.0091  Score=53.82  Aligned_cols=77  Identities=5%  Similarity=-0.156  Sum_probs=49.6

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcc---ccceeEEecCCCEEEEEeC
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY---FANGVALSKHGDFVVVCES   88 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~---~pngia~~~dg~~Lyv~~~   88 (224)
                      ...+++.|||+ |.++.....         .......+.++.+|.++++...+.....   ....++|+|||++|.++..
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~---------~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~  133 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEP---------IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE  133 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCC---------CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET
T ss_pred             cceEEECCCCCEEEEEecCcc---------ceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC
Confidence            56899999997 444432100         0011234789999988776654433222   2568999999987766553


Q ss_pred             CCCeEEEEEccC
Q 046107           89 WKFRCIKHWLKL  100 (224)
Q Consensus        89 ~~~~I~~~~~~~  100 (224)
                        +.|+.+++++
T Consensus       134 --~~i~~~~~~~  143 (723)
T 1xfd_A          134 --NNIYYCAHVG  143 (723)
T ss_dssp             --TEEEEESSSS
T ss_pred             --CeEEEEECCC
Confidence              6899998875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.24  E-value=0.006  Score=57.94  Aligned_cols=99  Identities=16%  Similarity=-0.000  Sum_probs=65.4

Q ss_pred             cccceEEe-cCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcc-ccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEA-SDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLY-FANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~-~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~-~pngia~~~dg~~Lyv~~~   88 (224)
                      .+..+++. |||+ |.++.                   .+.|+.++..+++...+..... ....++|+ ||+.|+++..
T Consensus       297 ~v~~~~~S~pdG~~la~~~-------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~  356 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-------------------RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR  356 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-------------------TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET
T ss_pred             ccceeeecCCCCCEEEEEE-------------------cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC
Confidence            46788899 8985 55543                   3678888877666554433333 56788999 9987876665


Q ss_pred             CCCeEE-EEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCI-KHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~-~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                       ..+|+ .+++++..   ...+. .....+..+++.+||+..+.....
T Consensus       357 -~~~l~~~~d~~~~~---~~~l~-~~~~~~~~~~~SpDG~~la~~~~~  399 (1045)
T 1k32_A          357 -EGDFLGIYDYRTGK---AEKFE-ENLGNVFAMGVDRNGKFAVVANDR  399 (1045)
T ss_dssp             -TEEEEEEEETTTCC---EEECC-CCCCSEEEEEECTTSSEEEEEETT
T ss_pred             -CCceEEEEECCCCC---ceEec-CCccceeeeEECCCCCEEEEECCC
Confidence             67899 88886532   22222 222456789999999866654444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.22  E-value=0.012  Score=55.76  Aligned_cols=82  Identities=17%  Similarity=0.242  Sum_probs=55.3

Q ss_pred             CceEE-EEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLL-RYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~-~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .+.+| .++.++++...+.........++++|||++|+++. ..+.|+.++++++   +.........+....+++.+||
T Consensus       357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg---~~~~~~~~~~~~v~~~~~SpDG  432 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETG---KPTVIERSREAMITDFTISDNS  432 (1045)
T ss_dssp             TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTC---CEEEEEECSSSCCCCEEECTTS
T ss_pred             CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCC---ceEEeccCCCCCccceEECCCC
Confidence            35688 88877666655553345567999999999887765 4579999998753   2333332223345789999999


Q ss_pred             CEEEEEe
Q 046107          127 SFWISLI  133 (224)
Q Consensus       127 ~l~va~~  133 (224)
                      +..+...
T Consensus       433 ~~la~~~  439 (1045)
T 1k32_A          433 RFIAYGF  439 (1045)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEe
Confidence            9555443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.019  Score=48.32  Aligned_cols=138  Identities=5%  Similarity=-0.005  Sum_probs=83.7

Q ss_pred             CCceEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceE--
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG---LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN--  121 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~---~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~--  121 (224)
                      .+|.|..+|..+++.......   ....+.++++|++++|+.+ +..+.|..|++....  ....+..........++  
T Consensus       190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~  266 (437)
T 3gre_A          190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG-TTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVC  266 (437)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE-ETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEEC
T ss_pred             CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE-cCCCeEEEEEcCCcc--EEEEEecCCCCceEEEEec
Confidence            367888899876655443333   3566799999999855544 566889999986421  11222101111234553  


Q ss_pred             --ECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCC-----
Q 046107          122 --LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAK-----  193 (224)
Q Consensus       122 --~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~-----  193 (224)
                        +.++|.+.++....                                    +.|..+|.. |+.+..+....+.     
T Consensus       267 ~~~s~~~~~l~s~~~d------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~  310 (437)
T 3gre_A          267 QFYGKNSVIVVGGSSK------------------------------------TFLTIWNFVKGHCQYAFINSDEQPSMEH  310 (437)
T ss_dssp             TTTCTTEEEEEEESTT------------------------------------EEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred             cccCCCccEEEEEcCC------------------------------------CcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence              33566666665554                                    667777754 6766666532211     


Q ss_pred             -----------------cccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          194 -----------------NISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       194 -----------------~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                       ....++.++..+++++++......|...++
T Consensus       311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          311 FLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSL  357 (437)
T ss_dssp             GSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEET
T ss_pred             ecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEEC
Confidence                             122356667668888888888888888775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.18  E-value=0.016  Score=47.72  Aligned_cols=101  Identities=11%  Similarity=0.067  Sum_probs=58.8

Q ss_pred             ccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEec-CCCEEEEEeC--
Q 046107           13 ANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSK-HGDFVVVCES--   88 (224)
Q Consensus        13 ~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~-dg~~Lyv~~~--   88 (224)
                      +..+++.+||+ |+++...             .....+.|+.+|.++++.+.+.... ..+ ++++| ||+.|+++..  
T Consensus       240 ~~~~~~spdg~~l~~~~~~-------------~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYF-------------KGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEE-------------TTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC
T ss_pred             ccceEECCCCCEEEEEecC-------------CCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCc
Confidence            45568888885 5555311             0112355999998777766554221 122 89999 9996655432  


Q ss_pred             -------------CCCeEEEEEccCCCcccceEeeccCCC----------CCCceEECCCCC-EEEE
Q 046107           89 -------------WKFRCIKHWLKLGDKRDREIFIENLPG----------GPDNINLAPDGS-FWIS  131 (224)
Q Consensus        89 -------------~~~~I~~~~~~~~~~~~~~~~~~~~~~----------~p~~i~~d~dG~-l~va  131 (224)
                                   ....|++++++++.   .+.+......          ....+++.+||+ |+++
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  368 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTKAKS---AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT  368 (396)
T ss_dssp             ----------CCCCCCEEEEEETTTTB---CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             ceeeccccccccCCCCcEEEEecccCc---eEEccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence                         34689999987533   2223221110          245678999997 4444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.023  Score=46.34  Aligned_cols=63  Identities=3%  Similarity=-0.254  Sum_probs=41.5

Q ss_pred             ccceeEEec--CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           70 FANGVALSK--HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        70 ~pngia~~~--dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ....++++|  +++ ++++-+..+.|..+++.....  ..............+++.++|.++++....
T Consensus       127 ~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          127 EIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQ--YIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             CEEEEECCC---CC-EEEEEETTCCEEEEESSSSCE--EEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             CEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcE--EEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            357899999  998 556666788999999875321  122211122346789999999988876555

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.18  E-value=0.013  Score=48.35  Aligned_cols=152  Identities=10%  Similarity=0.030  Sum_probs=86.5

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--------------cCcccccee
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--------------EGLYFANGV   74 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--------------~~~~~pngi   74 (224)
                      -...+.+++.+ +|++.++-.                 .+|.|..++.++++.....              ........+
T Consensus        43 ~~~v~~~~~s~~~~~~l~~~~-----------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  105 (408)
T 4a11_B           43 GGGINTLDIEPVEGRYMLSGG-----------------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV  105 (408)
T ss_dssp             SSCEEEEEECTTTCCEEEEEE-----------------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE
T ss_pred             CCcEEEEEEecCCCCEEEEEc-----------------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE
Confidence            34567889998 888776642                 2566777776543211111              123345689


Q ss_pred             EEec-CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC---CCCEEEEEecCCchhhhhhccChhHH
Q 046107           75 ALSK-HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP---DGSFWISLIKMNSSAVETVHSSKNRK  150 (224)
Q Consensus        75 a~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~---dG~l~va~~~~~~~~~~~~~~~p~~~  150 (224)
                      +++| +++ ++++....+.|..+++....  ....+  ........+++.+   ++.+.++....               
T Consensus       106 ~~~~~~~~-~l~s~~~d~~i~iwd~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  165 (408)
T 4a11_B          106 QWYPHDTG-MFTSSSFDKTLKVWDTNTLQ--TADVF--NFEETVYSHHMSPVSTKHCLVAVGTRG---------------  165 (408)
T ss_dssp             EECTTCTT-CEEEEETTSEEEEEETTTTE--EEEEE--ECSSCEEEEEECSSCSSCCEEEEEESS---------------
T ss_pred             EEccCCCc-EEEEEeCCCeEEEeeCCCCc--cceec--cCCCceeeeEeecCCCCCcEEEEEcCC---------------
Confidence            9999 555 66666678899999986521  11111  1223345566655   44466665554               


Q ss_pred             HHHhhchhhHHhhhhcCCCceEEEEEECCC-CcEEEEEeCCCCCcccceeEEEEE-C-CEEEEEeCCCCeEEEeeC
Q 046107          151 QLLEEHPELINQLMSTGKGAAAKVVKVSAN-GSIIREFNDPNAKNISFVTSALEF-Q-GNLYLASINSNFIGKLPL  223 (224)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~-~-g~lyv~~~~~~~i~~~~~  223 (224)
                                           +.|..+|.. ++.+..+....+    .++.+... + ..++++......|..+++
T Consensus       166 ---------------------~~v~~~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~  216 (408)
T 4a11_B          166 ---------------------PKVQLCDLKSGSCSHILQGHRQ----EILAVSWSPRYDYILATASADSRVKLWDV  216 (408)
T ss_dssp             ---------------------SSEEEEESSSSCCCEEECCCCS----CEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             ---------------------CeEEEEeCCCcceeeeecCCCC----cEEEEEECCCCCcEEEEEcCCCcEEEEEC
Confidence                                 345566643 566666644332    35555544 2 336666666677777665

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.17  E-value=0.0086  Score=49.89  Aligned_cols=86  Identities=17%  Similarity=0.084  Sum_probs=54.1

Q ss_pred             CCceEEEEeCCCCeEEEEecC--------ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEee---ccCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG--------LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFI---ENLPG  115 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~--------~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~---~~~~~  115 (224)
                      .+|.|..+|..+++.......        ......++++|+|++| ++-...+.|..|+......  ...+.   ..-.+
T Consensus       269 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~h~~  345 (380)
T 3iz6_a          269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL-FAGYSNGDCYVWDTLLAEM--VLNLGTLQNSHEG  345 (380)
T ss_dssp             SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEE-EEECTTSCEEEEETTTCCE--EEEECCSCSSCCC
T ss_pred             CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEE-EEEECCCCEEEEECCCCce--EEEEecccCCCCC
Confidence            467788888776654433221        1235689999999855 4555678999999753211  11111   11123


Q ss_pred             CCCceEECCCCCEEEEEecC
Q 046107          116 GPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus       116 ~p~~i~~d~dG~l~va~~~~  135 (224)
                      ....+++.++|.++++....
T Consensus       346 ~v~~l~~s~dg~~l~sgs~D  365 (380)
T 3iz6_a          346 RISCLGLSSDGSALCTGSWD  365 (380)
T ss_dssp             CCCEEEECSSSSEEEEECTT
T ss_pred             ceEEEEECCCCCEEEEeeCC
Confidence            56889999999988776655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.13  E-value=0.011  Score=53.90  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             ceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccc------cceeEEecCCCEEEEEeC
Q 046107           15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF------ANGVALSKHGDFVVVCES   88 (224)
Q Consensus        15 ~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~------pngia~~~dg~~Lyv~~~   88 (224)
                      .++..+||.+++++                   .|.|+.++.++++...+.++...      .+.+++||||++|+++..
T Consensus        21 ~~~w~~dg~~~~~~-------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~   81 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ-------------------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN   81 (740)
T ss_dssp             CEEECSSSEEEEEE-------------------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred             ccEECCCCcEEEEc-------------------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence            67888888776664                   36899999887876666543322      235889999998866653


Q ss_pred             C--------CCeEEEEEccCC
Q 046107           89 W--------KFRCIKHWLKLG  101 (224)
Q Consensus        89 ~--------~~~I~~~~~~~~  101 (224)
                      .        .+.++.+++.++
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~  102 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKR  102 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTT
T ss_pred             CeeeEEEccceEEEEEECCCC
Confidence            1        156788888753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.11  E-value=0.038  Score=50.09  Aligned_cols=130  Identities=8%  Similarity=0.099  Sum_probs=74.9

Q ss_pred             cceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC------C--eEEEEecCccccceeEEecCCCEEE
Q 046107           14 NDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS------K--QVSIVLEGLYFANGVALSKHGDFVV   84 (224)
Q Consensus        14 n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~------g--~~~~~~~~~~~pngia~~~dg~~Ly   84 (224)
                      .++++.+||+ |+++....             ......||.+|.++      +  ....+...... ..-.+++||+.||
T Consensus       236 ~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~  301 (710)
T 2xdw_A          236 GGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFT  301 (710)
T ss_dssp             EEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEE
T ss_pred             EEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECcccccccCCccceEEeeCCCCc-EEEEEeccCCEEE
Confidence            4677888885 44443210             01145788888764      3  34444433222 2235889999888


Q ss_pred             EEeCC---CCeEEEEEccCCCcccceEeeccCC-CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           85 VCESW---KFRCIKHWLKLGDKRDREIFIENLP-GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        85 v~~~~---~~~I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      +....   ..+|+++++++......+.++.... ....++++.+++.++++.....                        
T Consensus       302 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g------------------------  357 (710)
T 2xdw_A          302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV------------------------  357 (710)
T ss_dssp             EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT------------------------
T ss_pred             EEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC------------------------
Confidence            87643   4589999987532222344432222 1345677776677776655441                        


Q ss_pred             HhhhhcCCCceEEEEEECC-CCcEEEEEeCCC
Q 046107          161 NQLMSTGKGAAAKVVKVSA-NGSIIREFNDPN  191 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~  191 (224)
                                ...|.+++. +|+.+..+..+.
T Consensus       358 ----------~~~l~~~~~~~g~~~~~l~~~~  379 (710)
T 2xdw_A          358 ----------KNTLQLHDLATGALLKIFPLEV  379 (710)
T ss_dssp             ----------EEEEEEEETTTCCEEEEECCCS
T ss_pred             ----------EEEEEEEECCCCCEEEecCCCC
Confidence                      056788886 687766665543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.08  E-value=0.053  Score=49.23  Aligned_cols=39  Identities=15%  Similarity=0.264  Sum_probs=26.6

Q ss_pred             EEEEEECC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEe
Q 046107          172 AKVVKVSA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLAS  212 (224)
Q Consensus       172 ~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~  212 (224)
                      +.+..+|. .|+.+..+..+.+. ...+.. ...+|+.|++.
T Consensus       498 g~l~a~D~~tG~~lw~~~~~~~~-~~~p~~-y~~~G~~~v~~  537 (677)
T 1kb0_A          498 GRLVAYHAATGEKLWEAPTGTGV-VAAPST-YMVDGRQYVSV  537 (677)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC-CSCCEE-EEETTEEEEEE
T ss_pred             CcEEEEECCCCceeeeeeCCCCc-ccCCEE-EEeCCEEEEEE
Confidence            67899996 59999998877653 222211 24688888876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.02  E-value=0.0059  Score=58.65  Aligned_cols=84  Identities=8%  Similarity=-0.024  Sum_probs=54.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .+|.|..++..+++.............+++++++. ++ +-+..+.|..+++..+.  ....+. ...+....+++.++|
T Consensus      1023 ~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~vwd~~~~~--~~~~~~-~~~~~v~~~~~s~d~ 1097 (1249)
T 3sfz_A         1023 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LL-SWSFDGTVKVWNVITGR--IERDFT-CHQGTVLSCAISSDA 1097 (1249)
T ss_dssp             SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE-EE-EEESSSEEEEEETTTTC--CCEEEE-CCSSCCCCEEECSSS
T ss_pred             CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc-EE-EEECCCcEEEEECCCCc--eeEEEc-ccCCcEEEEEECCCC
Confidence            36778888877666544343444556889999874 44 44457899999986432  122332 223456889999999


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      +++++....
T Consensus      1098 ~~l~s~s~d 1106 (1249)
T 3sfz_A         1098 TKFSSTSAD 1106 (1249)
T ss_dssp             SSCEEECCS
T ss_pred             CEEEEEcCC
Confidence            876665554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.00  E-value=0.031  Score=44.47  Aligned_cols=31  Identities=10%  Similarity=-0.249  Sum_probs=22.4

Q ss_pred             ccccceeEEecC--CCEEEEEeCCCCeEEEEEcc
Q 046107           68 LYFANGVALSKH--GDFVVVCESWKFRCIKHWLK   99 (224)
Q Consensus        68 ~~~pngia~~~d--g~~Lyv~~~~~~~I~~~~~~   99 (224)
                      ......++++|+  ++.|+ +-...+.|..|++.
T Consensus       110 ~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iwd~~  142 (351)
T 3f3f_A          110 KGSLYSVKFAPAHLGLKLA-CLGNDGILRLYDAL  142 (351)
T ss_dssp             SSCEEEEEECCGGGCSEEE-EEETTCEEEEEECS
T ss_pred             CCceeEEEEcCCCCCcEEE-EecCCCcEEEecCC
Confidence            445578999998  87444 44567788888875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.98  E-value=0.09  Score=47.35  Aligned_cols=103  Identities=14%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC-----CeEE-EEecCccccceeEEecCCCEEE
Q 046107           12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS-----KQVS-IVLEGLYFANGVALSKHGDFVV   84 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-----g~~~-~~~~~~~~pngia~~~dg~~Ly   84 (224)
                      ..+.|++.+++ .+++|-.                 .++.|..++..+     +... .+.......+.++++||++ ++
T Consensus       384 ~V~~v~~~~~~~~~l~s~s-----------------~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~-~l  445 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSAS-----------------RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-FA  445 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEE-----------------TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS-EE
T ss_pred             eeEEEEecCCCCCEEEEEe-----------------CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC-EE
Confidence            34566666553 5666632                 356555555432     1222 2233344557899999998 55


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ++-+..+.|..+++....  ....+. ........+++.++|+..++....
T Consensus       446 ~sgs~Dg~v~vwd~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D  493 (694)
T 3dm0_A          446 LSGSWDGELRLWDLAAGV--STRRFV-GHTKDVLSVAFSLDNRQIVSASRD  493 (694)
T ss_dssp             EEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEeCCCcEEEEECCCCc--ceeEEe-CCCCCEEEEEEeCCCCEEEEEeCC
Confidence            555677899999986421  122222 222345788999999877766655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.98  E-value=0.037  Score=50.83  Aligned_cols=101  Identities=12%  Similarity=0.030  Sum_probs=56.6

Q ss_pred             ccceEEe-cCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-eEEEEecCc-cccceeEEecCCCEEEEEeC
Q 046107           13 ANDVIEA-SDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-QVSIVLEGL-YFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        13 ~n~v~~~-~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-~~~~~~~~~-~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..++++. |||+ |.|+...             .+.....|+.+|.++| +.  +.+.+ ....+++|+|||+.||++..
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~  240 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTK  240 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEE
Confidence            3456778 8885 5555422             0112345999998866 52  11111 12358999999988877654


Q ss_pred             CC----CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCE
Q 046107           89 WK----FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSF  128 (224)
Q Consensus        89 ~~----~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l  128 (224)
                      ..    .+|+++++.++......++.......-.++.+.+||+.
T Consensus       241 d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~  284 (751)
T 2xe4_A          241 DETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT  284 (751)
T ss_dssp             CTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE
T ss_pred             CCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE
Confidence            31    47998888653221222322111122245678899983

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.94  E-value=0.035  Score=45.64  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=53.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEec-CCCEEEEE-eCCC----CeEEEEEccCCCcccceEeeccC-CCCCCc
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSK-HGDFVVVC-ESWK----FRCIKHWLKLGDKRDREIFIENL-PGGPDN  119 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~-dg~~Lyv~-~~~~----~~I~~~~~~~~~~~~~~~~~~~~-~~~p~~  119 (224)
                      ....|+.+|.++++...+.........++++| |++.|+++ +...    .+|+.+++++..   .+.+.... ...+..
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~  242 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTH  242 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEE
T ss_pred             CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccc
Confidence            45689999988777776665555567889999 78766554 4222    579999987532   22222111 113456


Q ss_pred             eEECCCCC-EEEEEe
Q 046107          120 INLAPDGS-FWISLI  133 (224)
Q Consensus       120 i~~d~dG~-l~va~~  133 (224)
                      +++.+||+ |+++..
T Consensus       243 ~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEECTTSSCEEEEEE
T ss_pred             eEECCCCCEEEEEec
Confidence            78999997 455433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.91  E-value=0.037  Score=44.48  Aligned_cols=101  Identities=7%  Similarity=-0.066  Sum_probs=60.8

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeC-CCCeEEEEec--CccccceeEEecCCCEEEEEe
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDP-SSKQVSIVLE--GLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~g~~~~~~~--~~~~pngia~~~dg~~Lyv~~   87 (224)
                      ..+.+++.++|+ .+++-                 ..+|.|..++. ++++...+..  .....+.++++| ++ ++++.
T Consensus        58 ~v~~~~~~~~~~~~l~~~-----------------~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~  118 (342)
T 1yfq_A           58 PLLCCNFIDNTDLQIYVG-----------------TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DD-KLIAA  118 (342)
T ss_dssp             CEEEEEEEESSSEEEEEE-----------------ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TT-EEEEE
T ss_pred             ceEEEEECCCCCcEEEEE-----------------cCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CC-EEEEE
Confidence            345677777777 44442                 13578888888 7666655444  444557999999 77 44555


Q ss_pred             CCCCeEEEEEccCCCc------cc-ceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107           88 SWKFRCIKHWLKLGDK------RD-REIFIENLPGGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        88 ~~~~~I~~~~~~~~~~------~~-~~~~~~~~~~~p~~i~~d~dG~l~va~~~  134 (224)
                      ...+.|..+++.....      +. ...+  .....+..+++.+++ ++++...
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-l~~~~~d  169 (342)
T 1yfq_A          119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMDTNSSR-LIVGMNN  169 (342)
T ss_dssp             ETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEEECSSE-EEEEEST
T ss_pred             cCCCeEEEEcccccccccccccCCeeeEE--eeCCceEEEEecCCc-EEEEeCC
Confidence            5678999998753000      00 1111  123456788888877 5555443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.91  E-value=0.11  Score=42.24  Aligned_cols=63  Identities=19%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+.++++|+++ ++++.+..+.|..+++..+.  ....+. .-......+++.++|+..++....
T Consensus        77 ~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~~--~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d  139 (343)
T 2xzm_R           77 HFVSDLALSQENC-FAISSSWDKTLRLWDLRTGT--TYKRFV-GHQSEVYSVAFSPDNRQILSAGAE  139 (343)
T ss_dssp             SCEEEEEECSSTT-EEEEEETTSEEEEEETTSSC--EEEEEE-CCCSCEEEEEECSSTTEEEEEETT
T ss_pred             CceEEEEECCCCC-EEEEEcCCCcEEEEECCCCc--EEEEEc-CCCCcEEEEEECCCCCEEEEEcCC
Confidence            4457899999998 55566678899999986421  122222 223345789999999877766554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.031  Score=51.16  Aligned_cols=87  Identities=15%  Similarity=0.114  Sum_probs=50.5

Q ss_pred             CCceEEEEeCCCCeEEEE---ecCccccceeEEecC--CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107           47 PHGQLLRYDPSSKQVSIV---LEGLYFANGVALSKH--GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN  121 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~---~~~~~~pngia~~~d--g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~  121 (224)
                      .+|.|..+|..+++....   .........++++|+  ++.| ++-+..+.|..+++..........+ .........++
T Consensus        75 ~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v~~l~  152 (753)
T 3jro_A           75 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL-LVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSAS  152 (753)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE-EEEETTSEEEEEECCSSSCCCCEEE-ECCSSCEEEEE
T ss_pred             CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEE-EEEeCCCcEEEEEeecCCCcceeEe-ecCCCceEEEE
Confidence            356677777655543322   223445578999999  8744 5555678999999875321111122 12233456777


Q ss_pred             ECC-------------CCCEEEEEecC
Q 046107          122 LAP-------------DGSFWISLIKM  135 (224)
Q Consensus       122 ~d~-------------dG~l~va~~~~  135 (224)
                      +.+             +|.+.++....
T Consensus       153 ~~p~~~~~~~~~~~~~d~~~l~sgs~d  179 (753)
T 3jro_A          153 WAPATIEEDGEHNGTKESRKFVTGGAD  179 (753)
T ss_dssp             ECCCC---------CGGGCCEEEEETT
T ss_pred             ecCcccccccccccCCCCCEEEEEECC
Confidence            777             46666655544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.039  Score=46.30  Aligned_cols=158  Identities=9%  Similarity=0.039  Sum_probs=85.2

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC---Ce-E--EEEecCccccceeEEecCCCE
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS---KQ-V--SIVLEGLYFANGVALSKHGDF   82 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~---g~-~--~~~~~~~~~pngia~~~dg~~   82 (224)
                      -...+.+++.+ +|.++++-.                 .+|.|..+|..+   +. .  ............++++|+++.
T Consensus        63 ~~~V~~~~~s~~~~~~l~s~s-----------------~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  125 (437)
T 3gre_A           63 PNSITSSAVSPGETPYLITGS-----------------DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDA  125 (437)
T ss_dssp             TSCEEEEEEECSSSCEEEEEE-----------------TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSE
T ss_pred             CCceEEEEECCCCCCEEEEec-----------------CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCE
Confidence            35567888988 888777642                 256666666432   21 1  111123445678999999985


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccc-eEee-------cc----CCCCCCceE--ECCCCCEEEEEecCCchhhhhhccChh
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDR-EIFI-------EN----LPGGPDNIN--LAPDGSFWISLIKMNSSAVETVHSSKN  148 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~-~~~~-------~~----~~~~p~~i~--~d~dG~l~va~~~~~~~~~~~~~~~p~  148 (224)
                      |+ +-+..+.|..+++.....+.. ..+.       ..    .......+.  ..+++++.++....             
T Consensus       126 l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------  191 (437)
T 3gre_A          126 FA-VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL-------------  191 (437)
T ss_dssp             EE-EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT-------------
T ss_pred             EE-EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC-------------
Confidence            54 445678888888731000111 1000       00    011122222  34667766666655             


Q ss_pred             HHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          149 RKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                                             +.|..+|. .++.+..+..+..  -..++.++.. ++++.++......|..+++
T Consensus       192 -----------------------~~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  243 (437)
T 3gre_A          192 -----------------------SRVIIFDIRTLERLQIIENSPR--HGAVSSICIDEECCVLILGTTRGIIDIWDI  243 (437)
T ss_dssp             -----------------------SEEEEEETTTCCEEEEEECCGG--GCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             -----------------------CeEEEEeCCCCeeeEEEccCCC--CCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence                                   56677774 4677777655311  1245665554 4555555555566666654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.034  Score=45.21  Aligned_cols=105  Identities=11%  Similarity=-0.060  Sum_probs=57.4

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC-CC---eEE-EEecCccccceeEEecCCCEEEEE
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS-SK---QVS-IVLEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~g---~~~-~~~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ..+.+++.++|+..++-.                 .++.|..+|.. .+   +.. .+.......+.++++|+++ ++++
T Consensus       109 ~V~~v~~sp~g~~las~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s  170 (330)
T 2hes_X          109 EVKGVAWSNDGYYLATCS-----------------RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLAS  170 (330)
T ss_dssp             CEEEEEECTTSCEEEEEE-----------------TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEE
T ss_pred             cEEEEEECCCCCEEEEEe-----------------CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEE
Confidence            345677777777666532                 35667666652 12   221 2222334467899999998 5566


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC--CCEEEEEecC
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD--GSFWISLIKM  135 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d--G~l~va~~~~  135 (224)
                      -+..+.|..++...........+. .-.+....+++.++  +.+.++....
T Consensus       171 ~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D  220 (330)
T 2hes_X          171 SSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDD  220 (330)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred             EcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCC
Confidence            666788888876532111111221 11233466777777  4444444433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.86  E-value=0.0059  Score=47.82  Aligned_cols=58  Identities=12%  Similarity=0.013  Sum_probs=39.7

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-------CCCCCCceEECCCCCEEEE
Q 046107           68 LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-------LPGGPDNINLAPDGSFWIS  131 (224)
Q Consensus        68 ~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-------~~~~p~~i~~d~dG~l~va  131 (224)
                      ......++++|||. ||..  .++.++++++...   ..+.|+..       .-..-..+.+|++|.||+.
T Consensus        40 w~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~---~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav  104 (236)
T 1tl2_A           40 WSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTH---DNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV  104 (236)
T ss_dssp             CTTCSEEEECTTSC-EEEE--ETTEEEEESCCCS---TTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE
T ss_pred             cccceeEEECCCcc-EEEE--eCCeEEEECCCCC---CcccccccccEecccccccceEEEECCCCCEEEe
Confidence            34555899999997 9999  6678999997421   11222211       0012578899999999999

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.03  Score=49.88  Aligned_cols=113  Identities=11%  Similarity=-0.023  Sum_probs=68.7

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccC---CCCCCceEECCCCCEEEEEecCCchhhhhhcc
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENL---PGGPDNINLAPDGSFWISLIKMNSSAVETVHS  145 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~  145 (224)
                      .....++|+|||+.|-++ +..+.|..++.++    ....+-...   ......+++.|||++.++....          
T Consensus        86 ~~V~~vawSPdG~~LAs~-s~dg~V~iwd~~~----~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D----------  150 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVL-SNNGNVSVFKDNK----MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED----------  150 (588)
T ss_dssp             CCEEEEEECSSSSCEEEE-ETTSCEEEEETTE----EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT----------
T ss_pred             CcEEEEEECCCCCEEEEE-eCCCcEEEEeCCc----eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC----------
Confidence            445699999999855544 5667788887533    111111010   1135789999999977776665          


Q ss_pred             ChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCc--------EEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCe
Q 046107          146 SKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGS--------IIREFNDPNAKNISFVTSALEFQGNLYLASINSNF  217 (224)
Q Consensus       146 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~--------~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~  217 (224)
                                                +.|...+.+++        .+..+....+.....+..++...+. .+++...+.
T Consensus       151 --------------------------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~t  203 (588)
T 2j04_A          151 --------------------------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNS  203 (588)
T ss_dssp             --------------------------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCC
T ss_pred             --------------------------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCe
Confidence                                      56666775543        2455532221123567777777555 677777777


Q ss_pred             EEEeeC
Q 046107          218 IGKLPL  223 (224)
Q Consensus       218 i~~~~~  223 (224)
                      |...++
T Consensus       204 VrlWd~  209 (588)
T 2j04_A          204 VFSMTV  209 (588)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            776654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.15  Score=47.90  Aligned_cols=102  Identities=15%  Similarity=0.052  Sum_probs=66.9

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      ...+.++++++|++.++-.                 .+|.|..++..+++...........+.++|+| |+ ++++-...
T Consensus        18 ~~V~~lafspdg~~lAsgs-----------------~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D   78 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIAT-----------------VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAK   78 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEE-----------------TTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETT
T ss_pred             CCcEEEEECCCCCEEEEEe-----------------CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECc
Confidence            3467889999998777632                 36788888876554433333333457899999 77 44555567


Q ss_pred             CeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           91 FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +.|..++++.+.  ....+.  ..+....++++++|++.++....
T Consensus        79 ~~v~lWd~~~~~--~~~~~~--~~~~V~~v~~sp~g~~l~sgs~d  119 (902)
T 2oaj_A           79 DTVYVLSLYSQK--VLTTVF--VPGKITSIDTDASLDWMLIGLQN  119 (902)
T ss_dssp             CEEEEEETTTCS--EEEEEE--CSSCEEEEECCTTCSEEEEEETT
T ss_pred             CeEEEEECCCCc--EEEEEc--CCCCEEEEEECCCCCEEEEEcCC
Confidence            899999986432  112221  23456788999999877665554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.021  Score=52.36  Aligned_cols=106  Identities=12%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE--EecC-ccccceeEEecC--CCEEEE
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI--VLEG-LYFANGVALSKH--GDFVVV   85 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~--~~~~-~~~pngia~~~d--g~~Lyv   85 (224)
                      ...+.+++.++|..+++-.                 .+|.|..++..++....  ...+ ......++++++  ++ +++
T Consensus        10 ~~V~~l~~s~dg~~latg~-----------------~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~   71 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCS-----------------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILA   71 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEE-----------------TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-EEE
T ss_pred             ceeEEEEECCCCCeEEEEE-----------------CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-EEE
Confidence            3456788888887655532                 25666666654233222  2333 334478999987  87 445


Q ss_pred             EeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC--CCEEEEEecC
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD--GSFWISLIKM  135 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d--G~l~va~~~~  135 (224)
                      +-+..+.|..+++.++.......+. ........+++.++  |+++++....
T Consensus        72 s~s~Dg~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            5556788999998753211112221 12345678899998  8877776665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.81  E-value=0.15  Score=46.31  Aligned_cols=139  Identities=10%  Similarity=0.002  Sum_probs=76.8

Q ss_pred             CceEEEEeCCC---C---eEEEEec------CccccceeEEecCCCEEE-EEeCCC--CeEEEEEccCCC----cccceE
Q 046107           48 HGQLLRYDPSS---K---QVSIVLE------GLYFANGVALSKHGDFVV-VCESWK--FRCIKHWLKLGD----KRDREI  108 (224)
Q Consensus        48 ~g~l~~~~~~~---g---~~~~~~~------~~~~pngia~~~dg~~Ly-v~~~~~--~~I~~~~~~~~~----~~~~~~  108 (224)
                      ...|+.+|.++   +   +...+..      ...+...++|+|||+.++ +.....  ..|+.++++++.    ......
T Consensus       227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~  306 (740)
T 4a5s_A          227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ  306 (740)
T ss_dssp             EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred             eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence            34688899886   5   4444432      334456789999998443 333332  368888887533    111111


Q ss_pred             ee-ccCCC-----CCCceEECCCCCEEE-EEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC
Q 046107          109 FI-ENLPG-----GPDNINLAPDGSFWI-SLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG  181 (224)
Q Consensus       109 ~~-~~~~~-----~p~~i~~d~dG~l~v-a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G  181 (224)
                      +. +...+     .+...++.+||+.++ ......                                 .+..|+.++.+|
T Consensus       307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~---------------------------------G~~~l~~~~~~~  353 (740)
T 4a5s_A          307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE---------------------------------GYRHICYFQIDK  353 (740)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT---------------------------------SCEEEEEEETTC
T ss_pred             eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCC---------------------------------CceEEEEEECCC
Confidence            21 11111     145788999998433 222221                                 016789999887


Q ss_pred             cEEEEEeCCCCCcccceeEE-EEECCEEEEEeCC------CCeEEEeeC
Q 046107          182 SIIREFNDPNAKNISFVTSA-LEFQGNLYLASIN------SNFIGKLPL  223 (224)
Q Consensus       182 ~~~~~~~~~~g~~~~~~t~~-~~~~g~lyv~~~~------~~~i~~~~~  223 (224)
                      +....+..  |.  ..++.+ ..+++.||+.+..      ...|.++++
T Consensus       354 ~~~~~lT~--g~--~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          354 KDCTFITK--GT--WEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             SSCEESCC--SS--SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             CceEeccc--CC--EEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence            65555432  22  122222 3557888888765      235666654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.77  E-value=0.0074  Score=51.22  Aligned_cols=87  Identities=14%  Similarity=0.069  Sum_probs=52.9

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec--cCCCCCCceEECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE--NLPGGPDNINLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~  124 (224)
                      .+|.|..+|.++..+..+.......+.++++|+++.++++.+..+.|..|++.....  ...+..  .-......+++++
T Consensus       229 ~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~sp  306 (435)
T 4e54_B          229 NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG--KASFLYSLPHRHPVNAACFSP  306 (435)
T ss_dssp             SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS--SSCCSBCCBCSSCEEECCBCT
T ss_pred             CCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc--cceEEEeeeccccccceeECC
Confidence            367777788764333222222334578999999887777777788899999864211  111111  1112346778889


Q ss_pred             CCCEEEEEecC
Q 046107          125 DGSFWISLIKM  135 (224)
Q Consensus       125 dG~l~va~~~~  135 (224)
                      +|++.++....
T Consensus       307 dg~~l~s~~~D  317 (435)
T 4e54_B          307 DGARLLTTDQK  317 (435)
T ss_dssp             TSSEEEEEESS
T ss_pred             CCCeeEEEcCC
Confidence            99877766554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.74  E-value=0.15  Score=43.08  Aligned_cols=124  Identities=10%  Similarity=-0.061  Sum_probs=76.5

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+|.|..+|..+++......+ ......++++  ++ .+++-+..+.|..+++....    ..+..........+++.++
T Consensus       330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~s~dg~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~  402 (464)
T 3v7d_B          330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DK-FLVSAAADGSIRGWDANDYS----RKFSYHHTNLSAITTFYVS  402 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SS-EEEEEETTSEEEEEETTTCC----EEEEEECTTCCCEEEEEEC
T ss_pred             CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CC-EEEEEeCCCcEEEEECCCCc----eeeeecCCCCccEEEEEeC
Confidence            367788888776665444333 3334577776  45 44555567899999986421    1221112234566788899


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEEEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      |++.++.. .                                    +.|..+| ..|+.+..+..+.   ...++.+..+
T Consensus       403 ~~~l~~~~-d------------------------------------g~i~iwd~~~g~~~~~~~~~~---~~~v~~v~~~  442 (464)
T 3v7d_B          403 DNILVSGS-E------------------------------------NQFNIYNLRSGKLVHANILKD---ADQIWSVNFK  442 (464)
T ss_dssp             SSEEEEEE-T------------------------------------TEEEEEETTTCCEEESCTTTT---CSEEEEEEEE
T ss_pred             CCEEEEec-C------------------------------------CeEEEEECCCCcEEehhhccC---CCcEEEEEec
Confidence            99888766 3                                    4567777 3577776533322   2356777778


Q ss_pred             CCEEEEEeCCCCe
Q 046107          205 QGNLYLASINSNF  217 (224)
Q Consensus       205 ~g~lyv~~~~~~~  217 (224)
                      ++.+.++...+..
T Consensus       443 ~~~l~~~~~~~g~  455 (464)
T 3v7d_B          443 GKTLVAAVEKDGQ  455 (464)
T ss_dssp             TTEEEEEEEETTE
T ss_pred             CCEEEEEEEeCCe
Confidence            8888887765543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.71  E-value=0.11  Score=46.15  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=27.6

Q ss_pred             EEEEEECC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCC
Q 046107          172 AKVVKVSA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASIN  214 (224)
Q Consensus       172 ~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~  214 (224)
                      +.|..+|+ .|+.+..+..+.+. ...+ .....+|++|++...
T Consensus       485 g~l~a~D~~tG~~lw~~~~~~~~-~~~p-~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          485 GYLKALDNKDGKELWNFKMPSGG-IGSP-MTYSFKGKQYIGSMY  526 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC-CSCC-EEEEETTEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCCc-Eeee-EEEEECCEEEEEEEC
Confidence            57899995 59999888776442 2222 222478999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.028  Score=50.16  Aligned_cols=62  Identities=6%  Similarity=-0.130  Sum_probs=40.0

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccc-----eEeeccC---CCCCCceEECCCCCEEEEEecC
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDR-----EIFIENL---PGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~-----~~~~~~~---~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      -+.++|+|||++|+++. ..+.|..++++++.+.+.     ..+....   ..-...+++.|||  .++....
T Consensus       132 v~svafSPDG~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D  201 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN  201 (588)
T ss_dssp             EEEEEECSSSSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT
T ss_pred             EEEEEEcCCCCEEEEEc-CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC
Confidence            46899999999777665 578999999976433221     2221111   1245788999999  4454444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.68  E-value=0.087  Score=47.72  Aligned_cols=125  Identities=14%  Similarity=0.151  Sum_probs=69.0

Q ss_pred             ceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC--eEEEEecCccccceeEEecCCCEEEEEeCC--
Q 046107           15 DVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK--QVSIVLEGLYFANGVALSKHGDFVVVCESW--   89 (224)
Q Consensus        15 ~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g--~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--   89 (224)
                      ++.+.+||+ |+++...              ......||.++.+++  +...+......-... ++++|+.||+....  
T Consensus       238 ~~~~SpDg~~l~~~~~~--------------~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~  302 (693)
T 3iuj_A          238 GATVTEDDRFLLISAAN--------------STSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDA  302 (693)
T ss_dssp             EEEECTTSCEEEEEEES--------------SSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred             EEEEcCCCCEEEEEEcc--------------CCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCC
Confidence            566778885 5555322              112357888886544  445454333222222 67777778766533  


Q ss_pred             -CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCC
Q 046107           90 -KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGK  168 (224)
Q Consensus        90 -~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  168 (224)
                       ..+|++++++++.....+.+....   .+-+.++++|+..+.......                               
T Consensus       303 ~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~s~~g~~lv~~~~~~g-------------------------------  348 (693)
T 3iuj_A          303 PNRRLVTVDAANPGPAHWRDLIPER---QQVLTVHSGSGYLFAEYMVDA-------------------------------  348 (693)
T ss_dssp             TTCEEEEEETTSCCGGGCEEEECCC---SSCEEEEEETTEEEEEEEETT-------------------------------
T ss_pred             CCCEEEEEeCCCCCccccEEEecCC---CCEEEEEEECCEEEEEEEECC-------------------------------
Confidence             478999999764333334444222   222256666664333322210                               


Q ss_pred             CceEEEEEECCCCcEEEEEeCC
Q 046107          169 GAAAKVVKVSANGSIIREFNDP  190 (224)
Q Consensus       169 ~~~~~v~~~~~~G~~~~~~~~~  190 (224)
                        ...|..++.+|+....+..|
T Consensus       349 --~~~l~~~d~~g~~~~~l~~p  368 (693)
T 3iuj_A          349 --TARVEQFDYEGKRVREVALP  368 (693)
T ss_dssp             --EEEEEEECTTSCEEEEECCS
T ss_pred             --eeEEEEEECCCCeeEEeecC
Confidence              15788888888777766544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.67  E-value=0.026  Score=51.06  Aligned_cols=81  Identities=16%  Similarity=0.065  Sum_probs=50.5

Q ss_pred             CceEEEEeCCCCeEEEEecCcc-------ccceeEEecCCCEEEEEeC-CC---CeEEEEEccCCCcccceEeeccCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLY-------FANGVALSKHGDFVVVCES-WK---FRCIKHWLKLGDKRDREIFIENLPGG  116 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~-------~pngia~~~dg~~Lyv~~~-~~---~~I~~~~~~~~~~~~~~~~~~~~~~~  116 (224)
                      .+.||+.+..+++.+++.+.-.       ...++++||||++|.++.. .+   ..|+.++++++..-.    .+.....
T Consensus        93 ~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----~~~~~~~  168 (695)
T 2bkl_A           93 KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----VDVIEGG  168 (695)
T ss_dssp             SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS----SCCBSCC
T ss_pred             EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC----CcccCcc
Confidence            5778999876666666643211       3458899999998855543 22   579999997643210    1111222


Q ss_pred             -CCceEECCCCCEEEEE
Q 046107          117 -PDNINLAPDGSFWISL  132 (224)
Q Consensus       117 -p~~i~~d~dG~l~va~  132 (224)
                       ..++++.+||+.++..
T Consensus       169 ~~~~~~wspDg~~l~~~  185 (695)
T 2bkl_A          169 KYATPKWTPDSKGFYYE  185 (695)
T ss_dssp             TTCCCEECTTSSEEEEE
T ss_pred             cccceEEecCCCEEEEE
Confidence             2689999999844433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.60  E-value=0.21  Score=44.47  Aligned_cols=41  Identities=20%  Similarity=0.225  Sum_probs=28.1

Q ss_pred             EEEEEECC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCC
Q 046107          172 AKVVKVSA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASIN  214 (224)
Q Consensus       172 ~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~  214 (224)
                      +.+..+|. .|+.+..+..+.+. ...+. ....+|++||+...
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~-~a~P~-~y~~~G~qYv~~~~  548 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGI-VSPPI-TWEQDGEQYLGVTV  548 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC-CSCCE-EEEETTEEEEEEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCCc-ccCce-EEEECCEEEEEEEc
Confidence            57889996 59999998887653 22221 12478999998643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.60  E-value=0.2  Score=39.91  Aligned_cols=115  Identities=14%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             CceeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC--eEEEEecCc-cccceeEEe
Q 046107            1 MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK--QVSIVLEGL-YFANGVALS   77 (224)
Q Consensus         1 ~~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g--~~~~~~~~~-~~pngia~~   77 (224)
                      ||-++.+. -...+++++.++|+..+|-.                 .++.|..++..++  +......+. ...+.++++
T Consensus         1 ~~~~~~~h-~~~V~~~~~s~~g~~las~s-----------------~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s   62 (297)
T 2pm7_B            1 MVVIANAH-NEMIHDAVMDYYGKRMATCS-----------------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA   62 (297)
T ss_dssp             -CEECCSC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEEC
T ss_pred             CceeccCC-cCceEEEEECCCCCEEEEEe-----------------CCCEEEEEecCCCCcEEEEEEccccCCeEEEEec
Confidence            34344332 33567899999998777742                 2455555554322  222222333 344689998


Q ss_pred             cC--CCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC--CCEEEEEecC
Q 046107           78 KH--GDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD--GSFWISLIKM  135 (224)
Q Consensus        78 ~d--g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d--G~l~va~~~~  135 (224)
                      ++  ++ ++++-+..+.|..+++..+.......+. ........+++.++  |.+.++....
T Consensus        63 ~~~~g~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d  122 (297)
T 2pm7_B           63 HPKFGT-ILASCSYDGKVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSD  122 (297)
T ss_dssp             CGGGCS-EEEEEETTTEEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCCcCC-EEEEEcCCCEEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEEEEEECC
Confidence            63  66 6666667889999998643211122221 11234567888886  7766665544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.59  E-value=0.11  Score=42.64  Aligned_cols=88  Identities=15%  Similarity=-0.034  Sum_probs=54.9

Q ss_pred             CCCCceEEEEeCCCCe-----------------EEEEecCccccceeEEecCCCEEEEEeCCCCe-EEEEEccCCCcccc
Q 046107           45 GEPHGQLLRYDPSSKQ-----------------VSIVLEGLYFANGVALSKHGDFVVVCESWKFR-CIKHWLKLGDKRDR  106 (224)
Q Consensus        45 ~~~~g~l~~~~~~~g~-----------------~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~-I~~~~~~~~~~~~~  106 (224)
                      +..+|.|..+|..+++                 ...+.......+.++++|||+ ++++.+..+. |..+++..+.  ..
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~--~~  231 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGV--LV  231 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCC--EE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCc--EE
Confidence            3456778888876443                 222322334457999999998 5555556676 8999986421  12


Q ss_pred             eEeecc-CCCCCCceEECCCCCEEEEEecC
Q 046107          107 EIFIEN-LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus       107 ~~~~~~-~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+..+ .......+++.++|++.++....
T Consensus       232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          232 REFRRGLDRADVVDMKWSTDGSKLAVVSDK  261 (355)
T ss_dssp             EEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred             EEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence            233211 23456789999999988877665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.59  E-value=0.028  Score=45.46  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=62.5

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE--ecC-ccccceeEEec--CCCE
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV--LEG-LYFANGVALSK--HGDF   82 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~--~~~-~~~pngia~~~--dg~~   82 (224)
                      ..-...+.+++.++|+..++-.                 .++.|..+|..+++...+  ..+ ....+.+++++  +++ 
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs-----------------~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~-   72 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCS-----------------SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-   72 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEE-----------------TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS-
T ss_pred             cccCeEEEeeEcCCCCEEEEEe-----------------CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC-
Confidence            3344567899999998777742                 256666666544432211  223 34457899976  366 


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC--CCEEEEEecC
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD--GSFWISLIKM  135 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d--G~l~va~~~~  135 (224)
                      ++++-+..+.|..+++..+.......+. ........+++.++  |.+.++....
T Consensus        73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D  126 (316)
T 3bg1_A           73 ILASCSYDRKVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSD  126 (316)
T ss_dssp             CEEEEETTSCEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSS
T ss_pred             EEEEEECCCEEEEEECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCC
Confidence            5566667788999988642111111221 12335678888887  6665555444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.56  E-value=0.047  Score=44.98  Aligned_cols=72  Identities=11%  Similarity=-0.031  Sum_probs=50.3

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCce-EEEEeCCCCeEEEEec---CccccceeEEecCCCEEEEE
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQ-LLRYDPSSKQVSIVLE---GLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~g~~~~~~~---~~~~pngia~~~dg~~Lyv~   86 (224)
                      ...+.+++.++|++.++-.                 .+|. |..+|..+++......   .....+.++++|||++ +++
T Consensus       196 ~~v~~~~~s~~g~~l~s~s-----------------~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s  257 (355)
T 3vu4_A          196 NPIKMVRLNRKSDMVATCS-----------------QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK-LAV  257 (355)
T ss_dssp             SCEEEEEECTTSSEEEEEE-----------------TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE-EEE
T ss_pred             CceEEEEECCCCCEEEEEe-----------------CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE-EEE
Confidence            3456888999998777742                 3676 7778876665443333   3344579999999984 455


Q ss_pred             eCCCCeEEEEEccC
Q 046107           87 ESWKFRCIKHWLKL  100 (224)
Q Consensus        87 ~~~~~~I~~~~~~~  100 (224)
                      .+..+.|..+++..
T Consensus       258 ~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          258 VSDKWTLHVFEIFN  271 (355)
T ss_dssp             EETTCEEEEEESSC
T ss_pred             EECCCEEEEEEccC
Confidence            55678999999864

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.54  E-value=0.058  Score=49.20  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             cceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC--e-EEEEecCccccceeEEecCCCEEEEEeC-
Q 046107           14 NDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK--Q-VSIVLEGLYFANGVALSKHGDFVVVCES-   88 (224)
Q Consensus        14 n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g--~-~~~~~~~~~~pngia~~~dg~~Lyv~~~-   88 (224)
                      .++.+.+||+ |+++....             ......||.+|.+++  + ...+......-... +++||+.||+... 
T Consensus       271 ~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~  336 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGD  336 (741)
T ss_dssp             EEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECT
T ss_pred             EEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECC
Confidence            4677778885 44443210             012457888887655  4 45554433333333 4588988887753 


Q ss_pred             --CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           89 --WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 --~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                        ...+|+++++++.. +..+.++........+++++ ++.++++....
T Consensus       337 ~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d  383 (741)
T 1yr2_A          337 GAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHD  383 (741)
T ss_dssp             TCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred             CCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence              25679999987532 23333332222223456665 55666655443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.52  E-value=0.33  Score=43.43  Aligned_cols=41  Identities=15%  Similarity=0.325  Sum_probs=27.7

Q ss_pred             EEEEEECC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCC
Q 046107          172 AKVVKVSA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASIN  214 (224)
Q Consensus       172 ~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~  214 (224)
                      +.+..+|. .|+.+..+..+.+.. ..+.. ...+|++||+...
T Consensus       494 g~l~A~D~~tG~~lW~~~l~~g~~-~~P~~-y~~~G~qyv~~~~  535 (599)
T 1w6s_A          494 GYLKARDSDTGDLLWKFKIPSGAI-GYPMT-YTHKGTQYVAIYY  535 (599)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCC-SCCEE-EEETTEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEeeCCCCcE-eccEE-EEeCCEEEEEEEc
Confidence            57888996 499998888776542 22211 2478999987643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.48  E-value=0.24  Score=39.49  Aligned_cols=104  Identities=13%  Similarity=0.190  Sum_probs=56.5

Q ss_pred             ccccceEEecC-CcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe-----EEEEecC-ccccceeEEecCCCEE
Q 046107           11 RFANDVIEASD-GSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ-----VSIVLEG-LYFANGVALSKHGDFV   83 (224)
Q Consensus        11 ~~~n~v~~~~~-G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~-----~~~~~~~-~~~pngia~~~dg~~L   83 (224)
                      ...+.|++.|+ +++.+|-.                 .++.|..+|..+++     ......+ ......++++|||++|
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s-----------------~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l  101 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSAS-----------------RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA  101 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEE-----------------TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCEEEEEEeCCCCCEEEEEc-----------------CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE
Confidence            45678899886 57777642                 24555444432211     1112222 3455789999999855


Q ss_pred             EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           84 VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +. -...+.|..++.....   ..............+.+.+++++.++....
T Consensus       102 ~s-~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  149 (340)
T 4aow_A          102 LS-GSWDGTLRLWDLTTGT---TTRRFVGHTKDVLSVAFSSDNRQIVSGSRD  149 (340)
T ss_dssp             EE-EETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EE-EcccccceEEeecccc---eeeeecCCCCceeEEEEeecCccceeecCC
Confidence            54 4566788888875421   111111122234555666666655554433

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.22  E-value=0.44  Score=39.84  Aligned_cols=52  Identities=15%  Similarity=0.169  Sum_probs=38.4

Q ss_pred             CceEEEEeCCCCeEEEEec--C-ccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           48 HGQLLRYDPSSKQVSIVLE--G-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~--~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      ++.|+.+|..+|++..+..  + ....+.|+|+|||++|.++ +..+.|..+++..
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasg-s~Dg~v~iWd~~~  178 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG-TSSAEVQLWDVQQ  178 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEE-ETTSCEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEE-ECCCeEEEEEcCC
Confidence            6789999988887765543  2 2345799999999955554 5678899999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.21  Score=46.75  Aligned_cols=87  Identities=8%  Similarity=-0.063  Sum_probs=51.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceE-------e-eccCCCCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREI-------F-IENLPGGPD  118 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~-------~-~~~~~~~p~  118 (224)
                      .++.|..+|.++++...........+.++++|++++|+++. ..+.|..|++++.......+       . .....+...
T Consensus        77 ~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs-~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~  155 (902)
T 2oaj_A           77 AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGL-QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV  155 (902)
T ss_dssp             TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEE-TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred             CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEc-CCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence            35777777876555432222334457899999999777765 56789999987533211111       0 011123567


Q ss_pred             ceEECCCC-CEEEEEec
Q 046107          119 NINLAPDG-SFWISLIK  134 (224)
Q Consensus       119 ~i~~d~dG-~l~va~~~  134 (224)
                      .+++.+++ .+.++...
T Consensus       156 sl~~sp~~~~~l~~g~~  172 (902)
T 2oaj_A          156 SIQWNPRDIGTVLISYE  172 (902)
T ss_dssp             EEEEETTEEEEEEEECS
T ss_pred             EEEEccCCCCEEEEEeC
Confidence            89999864 44444333

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.19  E-value=0.37  Score=38.63  Aligned_cols=70  Identities=19%  Similarity=0.063  Sum_probs=47.9

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEE--ecCCCEEEEEeCCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVAL--SKHGDFVVVCESWK   90 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~--~~dg~~Lyv~~~~~   90 (224)
                      .+.+++.++|+..++-                 ..+|.|..+|..+++...........+.+++  +++++ ++++....
T Consensus        89 v~~~~~~~~~~~l~s~-----------------~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d  150 (368)
T 3mmy_A           89 VLDVCWSDDGSKVFTA-----------------SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWD  150 (368)
T ss_dssp             EEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCE-EEEEEETT
T ss_pred             EEEEEECcCCCEEEEE-----------------cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCC-EEEEccCC
Confidence            4566666666554442                 2367888888876766555555556689999  88886 55555567


Q ss_pred             CeEEEEEccC
Q 046107           91 FRCIKHWLKL  100 (224)
Q Consensus        91 ~~I~~~~~~~  100 (224)
                      +.|..|++..
T Consensus       151 g~i~vwd~~~  160 (368)
T 3mmy_A          151 KTLKFWDTRS  160 (368)
T ss_dssp             SEEEEECSSC
T ss_pred             CcEEEEECCC
Confidence            8999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.15  E-value=0.37  Score=38.33  Aligned_cols=85  Identities=18%  Similarity=0.129  Sum_probs=49.1

Q ss_pred             CceEEEEeCCCCeEEEEe-cC-ccccceeEEecCCC-EEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC
Q 046107           48 HGQLLRYDPSSKQVSIVL-EG-LYFANGVALSKHGD-FVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~-~~-~~~pngia~~~dg~-~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      ++.+..++.......... .. ....+.+++++++. .++++....+.|..+++....  ....+. ...+....+++.+
T Consensus       149 d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~-~h~~~v~~~~~s~  225 (340)
T 4aow_A          149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHI-GHTGYLNTVTVSP  225 (340)
T ss_dssp             TSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEECT
T ss_pred             CCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc--eeeEec-CCCCcEEEEEECC
Confidence            455666665433222221 11 23345778887653 356666677889999886421  112221 2233457889999


Q ss_pred             CCCEEEEEecC
Q 046107          125 DGSFWISLIKM  135 (224)
Q Consensus       125 dG~l~va~~~~  135 (224)
                      +|+++++....
T Consensus       226 ~~~~l~s~s~D  236 (340)
T 4aow_A          226 DGSLCASGGKD  236 (340)
T ss_dssp             TSSEEEEEETT
T ss_pred             CCCEEEEEeCC
Confidence            99988876665

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.10  E-value=0.39  Score=38.12  Aligned_cols=53  Identities=15%  Similarity=0.104  Sum_probs=32.8

Q ss_pred             CCceEEEEeCCCCeEE---EEecCccccceeEEecC--CCEEEEEeCCCCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVS---IVLEGLYFANGVALSKH--GDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~---~~~~~~~~pngia~~~d--g~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .++.|..+|..+++..   .+.......+.++++|+  |+ ++++-+..+.|..+++..
T Consensus        75 ~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           75 YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCS
T ss_pred             CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecC
Confidence            3566666666544321   12222344578999997  76 555556678999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.07  E-value=0.54  Score=39.51  Aligned_cols=83  Identities=12%  Similarity=0.032  Sum_probs=49.9

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+|.|..+|..+++......+ ......++++|+++.|+.+ +..+.|..|++..+.  ....+. ........++++  
T Consensus       288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~--~~~~~~-~h~~~v~~~~~~--  361 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLENGE--LMYTLQ-GHTALVGLLRLS--  361 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEC--
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--EEEEEe-CCCCcEEEEEEc--
Confidence            367788888776655443333 3445789999999855544 567889999986421  112221 122334566665  


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      +++.++....
T Consensus       362 ~~~l~s~s~d  371 (464)
T 3v7d_B          362 DKFLVSAAAD  371 (464)
T ss_dssp             SSEEEEEETT
T ss_pred             CCEEEEEeCC
Confidence            5655555554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.96  E-value=0.32  Score=44.15  Aligned_cols=40  Identities=15%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeC
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASI  213 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~  213 (224)
                      +.+..+|.+ |+.+..+..+.+.. ..+.. ...+|+.||+..
T Consensus       496 g~l~a~D~~tG~~lw~~~~~~~~~-~~p~t-y~~~G~qyv~~~  536 (689)
T 1yiq_A          496 GRVIAYAADTGEKLWEQPAASGVM-AAPVT-YSVDGEQYVTFM  536 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCC-SCCEE-EEETTEEEEEEE
T ss_pred             CcEEEEECCCCccceeeeCCCCcc-cCceE-EEECCEEEEEEE
Confidence            578999965 99999988776532 22211 247899998865

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.89  E-value=0.32  Score=44.00  Aligned_cols=41  Identities=20%  Similarity=0.396  Sum_probs=27.5

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCC
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASIN  214 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~  214 (224)
                      +.+..+|.+ |+.+..+..+.+. ...+.. ...+|++|++...
T Consensus       479 g~l~a~d~~tG~~l~~~~~~~~~-~~~p~~-~~~~G~~yva~~~  520 (668)
T 1kv9_A          479 GQMHAYSADKGEALWQFEAQSGI-VAAPMT-FELAGRQYVAIMA  520 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC-CSCCEE-EEETTEEEEEEEE
T ss_pred             ccchhhhhhcChhheEecCCCCc-ccCceE-EEECCEEEEEEEe
Confidence            578899965 9999888776543 222222 2478899987644

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=95.82  E-value=0.062  Score=48.42  Aligned_cols=77  Identities=9%  Similarity=-0.113  Sum_probs=41.5

Q ss_pred             CceEEEEeCCCCeEE---EEe------cCccccceeEEecCCCEEEEEe-CC--CCeEEEEE----ccCCCcccceEee-
Q 046107           48 HGQLLRYDPSSKQVS---IVL------EGLYFANGVALSKHGDFVVVCE-SW--KFRCIKHW----LKLGDKRDREIFI-  110 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~---~~~------~~~~~pngia~~~dg~~Lyv~~-~~--~~~I~~~~----~~~~~~~~~~~~~-  110 (224)
                      ...|+.+|.++++..   .+.      ........++|+||++.+|... ..  ..+|+.++    ++++.   ...+. 
T Consensus       223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~---~~~~~~  299 (719)
T 1z68_A          223 VVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD---CPKTQE  299 (719)
T ss_dssp             EEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE---CCGGGE
T ss_pred             eeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc---eEEEEe
Confidence            347888888755421   121      1223446899999986444422 22  24588888    65322   11111 


Q ss_pred             ---ccCCCCCC-----ceEECCCCC
Q 046107          111 ---ENLPGGPD-----NINLAPDGS  127 (224)
Q Consensus       111 ---~~~~~~p~-----~i~~d~dG~  127 (224)
                         ....+..+     .+++.+||+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~spdg~  324 (719)
T 1z68_A          300 HIEESRTGWAGGFFVSTPVFSYDAI  324 (719)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             cccccCCceEccccCCccEECCCCC
Confidence               11122223     788999998

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.59  E-value=0.019  Score=48.01  Aligned_cols=61  Identities=10%  Similarity=-0.011  Sum_probs=35.5

Q ss_pred             cCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEcc
Q 046107           20 SDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLK   99 (224)
Q Consensus        20 ~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~   99 (224)
                      .++.||++.                  .+|.|+.+|.++|+....... .......+..+++ +|++.+..+.|+.++.+
T Consensus         8 ~~~~v~~gs------------------~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            8 PETLLFVST------------------LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             CTTEEEEEE------------------TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC---
T ss_pred             eCCEEEEEc------------------CCCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECC
Confidence            467888885                  257899999877876543333 2233333445665 78877778899999985


Q ss_pred             C
Q 046107          100 L  100 (224)
Q Consensus       100 ~  100 (224)
                      .
T Consensus        68 t   68 (369)
T 2hz6_A           68 N   68 (369)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.53  E-value=0.056  Score=47.95  Aligned_cols=86  Identities=15%  Similarity=0.177  Sum_probs=60.9

Q ss_pred             eEEEEeCCC----C-eEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC------CCc-ccceE-eecc-CCC
Q 046107           50 QLLRYDPSS----K-QVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL------GDK-RDREI-FIEN-LPG  115 (224)
Q Consensus        50 ~l~~~~~~~----g-~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~------~~~-~~~~~-~~~~-~~~  115 (224)
                      .+-.+|...    + .........+.|+|+.++|||++++++...+..+..|+.+-      .++ ....+ ..+. +.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            356677653    1 34445667789999999999999999999999999999751      111 11111 2221 223


Q ss_pred             CCCceEECCCCCEEEEEecC
Q 046107          116 GPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus       116 ~p~~i~~d~dG~l~va~~~~  135 (224)
                      .|-..++|++|+.|.+-+-.
T Consensus       379 GPlHt~Fd~~G~aYTtlfid  398 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFID  398 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTT
T ss_pred             cccEEEECCCCceEeeeeec
Confidence            79999999999999998765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.52  E-value=0.91  Score=37.99  Aligned_cols=84  Identities=7%  Similarity=-0.027  Sum_probs=43.3

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+|.|..+|..+++......+ ......++++  ++ .+++-+..+.|..+++.....................+++  +
T Consensus       191 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~  265 (435)
T 1p22_A          191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--D  265 (435)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--E
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--C
Confidence            466777777665554333322 2334566775  34 4455556789999998643211111111111223345555  5


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      |++.++....
T Consensus       266 ~~~l~s~~~d  275 (435)
T 1p22_A          266 DKYIVSASGD  275 (435)
T ss_dssp             TTEEEEEETT
T ss_pred             CCEEEEEeCC
Confidence            6666655544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.52  E-value=0.28  Score=39.41  Aligned_cols=53  Identities=11%  Similarity=-0.027  Sum_probs=34.5

Q ss_pred             CCceEEEEeCCCCeEE---EEecCccccceeEEecC--CCEEEEEeCCCCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVS---IVLEGLYFANGVALSKH--GDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~---~~~~~~~~pngia~~~d--g~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .++.|..+|..+++.+   .+.......+.++++|+  +. ++++-+..+.|..++..+
T Consensus        79 ~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           79 YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECS
T ss_pred             CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCC
Confidence            4677777777654322   12223345689999998  65 566666778888888764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.33  Score=42.55  Aligned_cols=87  Identities=14%  Similarity=-0.032  Sum_probs=53.1

Q ss_pred             CCceEEEEeCCCCe-EE-EEecCcccccee--EEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC-CCCCceE
Q 046107           47 PHGQLLRYDPSSKQ-VS-IVLEGLYFANGV--ALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP-GGPDNIN  121 (224)
Q Consensus        47 ~~g~l~~~~~~~g~-~~-~~~~~~~~pngi--a~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-~~p~~i~  121 (224)
                      .+|.|..+|.+++. .. .+.......+.|  +++++|..++++.+..+.|..+++....  ....+..... +....++
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~~~v~~v~  362 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRGSNLVPVV  362 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSCCSCCCEE
T ss_pred             CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC--cccccccccccCcccceE
Confidence            46888888876442 21 122223345677  4678873377888888999999986421  1122221122 1246789


Q ss_pred             ECCCCCEEEEEecC
Q 046107          122 LAPDGSFWISLIKM  135 (224)
Q Consensus       122 ~d~dG~l~va~~~~  135 (224)
                      +.|+|..+++....
T Consensus       363 fsp~~~~l~s~~~d  376 (524)
T 2j04_B          363 YCPQIYSYIYSDGA  376 (524)
T ss_dssp             EETTTTEEEEECSS
T ss_pred             eCCCcCeEEEeCCC
Confidence            99999888776655

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.47  E-value=0.5  Score=39.46  Aligned_cols=86  Identities=8%  Similarity=-0.016  Sum_probs=59.9

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC-CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCES-WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~-~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .++.|..+|..+++.............++++++++.|+++.. ..+.|..|+.....  ....+. +-.+....+++.+|
T Consensus       299 ~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~-gH~~~V~~l~~spd  375 (420)
T 4gga_A          299 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELK-GHTSRVLSLTMSPD  375 (420)
T ss_dssp             TTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTT
T ss_pred             CCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCC
Confidence            467787888777766655556667788999999998887763 56889999986421  122222 12234578999999


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      |++.++....
T Consensus       376 g~~l~S~s~D  385 (420)
T 4gga_A          376 GATVASAAAD  385 (420)
T ss_dssp             SSCEEEEETT
T ss_pred             CCEEEEEecC
Confidence            9988876665

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.34  E-value=0.96  Score=40.42  Aligned_cols=52  Identities=4%  Similarity=-0.108  Sum_probs=32.4

Q ss_pred             CceEEEEeC-CCCeEEEEecCc------------cccceeEEecCCCE----EEEEeCCCCeEEEEEccC
Q 046107           48 HGQLLRYDP-SSKQVSIVLEGL------------YFANGVALSKHGDF----VVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        48 ~g~l~~~~~-~~g~~~~~~~~~------------~~pngia~~~dg~~----Lyv~~~~~~~I~~~~~~~  100 (224)
                      .+.|+.+|. ++|+...-.+..            ....|++++|++..    ||+.. ..++|+.++.++
T Consensus        72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t-~dg~l~AlDa~T  140 (599)
T 1w6s_A           72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ-LDGNVAALNAET  140 (599)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC-TTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc-CCCEEEEEECCC
Confidence            467888888 667654322111            11247888654445    88875 457899999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.34  E-value=0.77  Score=36.01  Aligned_cols=52  Identities=13%  Similarity=0.155  Sum_probs=37.4

Q ss_pred             CceEEEEeCCCCeEEEEec--C-ccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           48 HGQLLRYDPSSKQVSIVLE--G-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~--~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      +++|..+|.++++......  + ...-+.++++|++++| ++-+..+.|..+++..
T Consensus        44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l-~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE-EEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE-EEEECCCcEEEeecCC
Confidence            5678888988777655443  2 2335789999999855 5555678999999864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.28  E-value=0.95  Score=36.79  Aligned_cols=83  Identities=17%  Similarity=0.234  Sum_probs=45.5

Q ss_pred             CceEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGL-YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~-~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .|.|++-.-.+..++.+.... ....+++++++++ +|+.. ..+.|++-+-.++.  ..+.+..........++++++|
T Consensus       141 ~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~--tW~~~~~~~~~~~~~~~~~~~g  216 (327)
T 2xbg_A          141 VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQT--AWEPHNRTTSRRLHNMGFTPDG  216 (327)
T ss_dssp             TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCS--SCEEEECCSSSCEEEEEECTTS
T ss_pred             CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCC--ceeECCCCCCCccceeEECCCC
Confidence            345666443334566554332 2346788899886 55443 34667776543221  1222211122345678888899


Q ss_pred             CEEEEEec
Q 046107          127 SFWISLIK  134 (224)
Q Consensus       127 ~l~va~~~  134 (224)
                      ++|++...
T Consensus       217 ~~~~~~~~  224 (327)
T 2xbg_A          217 RLWMIVNG  224 (327)
T ss_dssp             CEEEEETT
T ss_pred             CEEEEeCC
Confidence            99987654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.26  E-value=0.079  Score=45.23  Aligned_cols=66  Identities=11%  Similarity=-0.016  Sum_probs=41.9

Q ss_pred             ccceeEEecCCCEEEE---EeCCCCeEEEEEccCCC---cccce---Eee--ccCCCCCCceEECCC-CCEEEEEecC
Q 046107           70 FANGVALSKHGDFVVV---CESWKFRCIKHWLKLGD---KRDRE---IFI--ENLPGGPDNINLAPD-GSFWISLIKM  135 (224)
Q Consensus        70 ~pngia~~~dg~~Lyv---~~~~~~~I~~~~~~~~~---~~~~~---~~~--~~~~~~p~~i~~d~d-G~l~va~~~~  135 (224)
                      ..+.++|+|||++|+|   +....+.|..|++....   ....+   .+.  .........+++.++ ++++++....
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            4678999999998887   55667889999875310   00001   111  111235678899987 6777766555

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.83  E-value=0.44  Score=42.78  Aligned_cols=81  Identities=12%  Similarity=0.044  Sum_probs=45.5

Q ss_pred             EeCCCCeEEEEecCccccceeEEec-CCCEEEEEeCC-----------CCeEEEEEccCCCcccceEeeccCCCCCCceE
Q 046107           54 YDPSSKQVSIVLEGLYFANGVALSK-HGDFVVVCESW-----------KFRCIKHWLKLGDKRDREIFIENLPGGPDNIN  121 (224)
Q Consensus        54 ~~~~~g~~~~~~~~~~~pngia~~~-dg~~Lyv~~~~-----------~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~  121 (224)
                      +|+..++++.+..-...+...++.+ +|+ |||.-..           ...+++|++....-...............+.+
T Consensus       171 ~dp~~~~W~~~~~~P~~~~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~  249 (656)
T 1k3i_A          171 PQPGLGRWGPTIDLPIVPAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGIS  249 (656)
T ss_dssp             CCTTSCEEEEEEECSSCCSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEE
T ss_pred             CCCCCCeeeeeccCCCCceeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccccc
Confidence            4455567776554444566888888 664 8886321           12688898865322111111100111223467


Q ss_pred             ECCCCCEEEEEecC
Q 046107          122 LAPDGSFWISLIKM  135 (224)
Q Consensus       122 ~d~dG~l~va~~~~  135 (224)
                      +..+|.||+..+..
T Consensus       250 ~~~~g~lyv~GG~~  263 (656)
T 1k3i_A          250 MDGNGQIVVTGGND  263 (656)
T ss_dssp             ECTTSCEEEECSSS
T ss_pred             CCCCCCEEEeCCCC
Confidence            77899999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=94.78  E-value=1.5  Score=36.56  Aligned_cols=51  Identities=8%  Similarity=-0.040  Sum_probs=32.6

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .+|.|..+|..+++......+ ......++++  ++ ++++....+.|..+++..
T Consensus       137 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~  188 (445)
T 2ovr_B          137 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN-IIISGSTDRTLKVWNAET  188 (445)
T ss_dssp             TTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CC-EEEEEeCCCeEEEEECCc
Confidence            367788888766655433333 2334577776  45 555556678999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=94.76  E-value=1.6  Score=36.53  Aligned_cols=131  Identities=16%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+|.|..+|..+++......+ ......+++  +++.|+.+ ...+.|..+++....  ....+. ........+.+  +
T Consensus       257 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~--~  328 (445)
T 2ovr_B          257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSG-SLDTSIRVWDVETGN--CIHTLT-GHQSLTSGMEL--K  328 (445)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEE-ETTSCEEEEETTTCC--EEEEEC-CCCSCEEEEEE--E
T ss_pred             CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEE-eCCCeEEEEECCCCC--EEEEEc-CCcccEEEEEE--e
Confidence            356676777654543333322 223345666  67755554 456789999886421  111221 11122334444  4


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF  204 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~  204 (224)
                      ++++++....                                    +.|..+|. .|+.+..+..+.+. ...++.+..+
T Consensus       329 ~~~l~~~~~d------------------------------------g~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~  371 (445)
T 2ovr_B          329 DNILVSGNAD------------------------------------STVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN  371 (445)
T ss_dssp             TTEEEEEETT------------------------------------SCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC
T ss_pred             CCEEEEEeCC------------------------------------CeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC
Confidence            6666665544                                    45666674 57877777654321 2345565555


Q ss_pred             CCEEEEEeCCCCeEEEeeC
Q 046107          205 QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~~  223 (224)
                      + ++.++......|..+++
T Consensus       372 ~-~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          372 K-NFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             S-SEEEEEETTSEEEEEET
T ss_pred             C-CEEEEEeCCCeEEEEEC
Confidence            4 45555555677777664

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=94.37  E-value=1.9  Score=35.89  Aligned_cols=38  Identities=11%  Similarity=0.033  Sum_probs=24.3

Q ss_pred             CCCceEEEEeCCCCeEEEEec-C---ccccceeEEecCCCEE
Q 046107           46 EPHGQLLRYDPSSKQVSIVLE-G---LYFANGVALSKHGDFV   83 (224)
Q Consensus        46 ~~~g~l~~~~~~~g~~~~~~~-~---~~~pngia~~~dg~~L   83 (224)
                      ..++.|-.+|.++|+...... +   ....+.++|+|||+++
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~l  241 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLF  241 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEE
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEE
Confidence            347788888988776543332 2   2234466899999744

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.25  E-value=2  Score=35.64  Aligned_cols=74  Identities=7%  Similarity=-0.023  Sum_probs=41.2

Q ss_pred             cccceEEec--CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccc--------------cceeE
Q 046107           12 FANDVIEAS--DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYF--------------ANGVA   75 (224)
Q Consensus        12 ~~n~v~~~~--~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~--------------pngia   75 (224)
                      ..+.|++++  +++||+.-..              ......|++.+..+..++.+.....+              ...|+
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~--------------g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~  121 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAART--------------GHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLT  121 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC----------------CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecC--------------CCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEE
Confidence            456788887  6788887421              00112588876544455554322111              22577


Q ss_pred             Eec-C-CCEEEEEeCCCCeEEEEEccC
Q 046107           76 LSK-H-GDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        76 ~~~-d-g~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      ++| + .+.||+... .+.|++.+-.|
T Consensus       122 ~~~~~~~~~l~~g~~-~ggl~~S~DgG  147 (394)
T 3b7f_A          122 PGHASEPGTWYAGTS-PQGLFRSTDHG  147 (394)
T ss_dssp             ECCTTSTTCEEEEEE-TTEEEEESSTT
T ss_pred             eCCCCCCCEEEEEec-CCcEEEEcCCC
Confidence            876 2 445888653 45788776544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.08  E-value=2  Score=34.87  Aligned_cols=58  Identities=9%  Similarity=0.039  Sum_probs=33.1

Q ss_pred             ccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CC---C--CCCceEECCCCCEEEEEec
Q 046107           70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LP---G--GPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~---~--~p~~i~~d~dG~l~va~~~  134 (224)
                      ....++++++++ +|++.. .+.+++.+.+++.     .|... .+   .  ....+++++++.+|++...
T Consensus       206 ~~~~~~~~~~g~-~~~~~~-~G~~~~s~~D~G~-----tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~  269 (327)
T 2xbg_A          206 RLHNMGFTPDGR-LWMIVN-GGKIAFSDPDNSE-----NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA  269 (327)
T ss_dssp             CEEEEEECTTSC-EEEEET-TTEEEEEETTEEE-----EECCCBCTTSSCCSCEEEEEESSSSCEEEEEST
T ss_pred             ccceeEECCCCC-EEEEeC-CceEEEecCCCCC-----eeEeccCCcccCCcceEEEEecCCCEEEEEeCC
Confidence            345788889886 776654 4567665444211     22211 11   1  1245667778899998654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.99  E-value=1.9  Score=39.41  Aligned_cols=51  Identities=8%  Similarity=-0.085  Sum_probs=32.9

Q ss_pred             eEEEEeCCCCe--EEEEe--cCccccceeEEecCCCEEEEEeC--CCCeEEEEEccC
Q 046107           50 QLLRYDPSSKQ--VSIVL--EGLYFANGVALSKHGDFVVVCES--WKFRCIKHWLKL  100 (224)
Q Consensus        50 ~l~~~~~~~g~--~~~~~--~~~~~pngia~~~dg~~Lyv~~~--~~~~I~~~~~~~  100 (224)
                      .||+++..+++  -..+.  ....+-.++.++|||++|+++..  ....|+.+++++
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            68888876442  12222  12233357899999999877663  356899999875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.71  E-value=3.5  Score=36.44  Aligned_cols=48  Identities=10%  Similarity=0.088  Sum_probs=30.3

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      +.|+.+|+. |+.+..+...... .  .+.++..++.+|+++. ...|..++.
T Consensus       444 g~l~a~D~~tG~~~W~~~~~~~~-~--~~~~~t~gg~v~~g~~-dg~l~a~D~  492 (571)
T 2ad6_A          444 GQIRAFDLTTGKAKWTKWEKFAA-W--GGTLYTKGGLVWYATL-DGYLKALDN  492 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC-C--SBCEEETTTEEEEECT-TSEEEEEET
T ss_pred             CeEEEEECCCCCEEEEecCCCCc-c--ceeEEECCCEEEEEcC-CCeEEEEEC
Confidence            889999964 9988777543221 1  1223345788998754 466666653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.63  E-value=2.2  Score=34.03  Aligned_cols=125  Identities=11%  Similarity=-0.080  Sum_probs=66.1

Q ss_pred             ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeC--------CCCeEEEEEccCCCcccceEeeccCCCCC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCES--------WKFRCIKHWLKLGDKRDREIFIENLPGGP  117 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~--------~~~~I~~~~~~~~~~~~~~~~~~~~~~~p  117 (224)
                      ..++++|+.+++++.+.. ...|   .+++.. ++ .|||.-.        ..+.+++|++...   +.+.........-
T Consensus        67 ~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~  140 (315)
T 4asc_A           67 AYFLQFDHLDSEWLGMPP-LPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSF---KWGESDPLPYVVY  140 (315)
T ss_dssp             EEEEEEETTTTEEEECCC-BSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTT---EEEECCCCSSCCB
T ss_pred             cceEEecCCCCeEEECCC-CCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCC---cEeECCCCCCccc
Confidence            349999998888876532 2222   234443 44 5888743        1356899998642   2222211111111


Q ss_pred             CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCccc
Q 046107          118 DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNIS  196 (224)
Q Consensus       118 ~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~  196 (224)
                      ...++--++.+|+..+....                              ......+.++|+....-..+. .|...  .
T Consensus       141 ~~~~~~~~~~iyv~GG~~~~------------------------------~~~~~~~~~yd~~~~~W~~~~~~p~~r--~  188 (315)
T 4asc_A          141 GHTVLSHMDLVYVIGGKGSD------------------------------RKCLNKMCVYDPKKFEWKELAPMQTAR--S  188 (315)
T ss_dssp             SCEEEEETTEEEEECCBCTT------------------------------SCBCCCEEEEETTTTEEEECCCCSSCC--B
T ss_pred             ceeEEEECCEEEEEeCCCCC------------------------------CcccceEEEEeCCCCeEEECCCCCCch--h
Confidence            22233356789998765211                              111157899998754333332 23222  2


Q ss_pred             ceeEEEEECCEEEEEe
Q 046107          197 FVTSALEFQGNLYLAS  212 (224)
Q Consensus       197 ~~t~~~~~~g~lyv~~  212 (224)
                       ...++..+++||+-.
T Consensus       189 -~~~~~~~~~~iyv~G  203 (315)
T 4asc_A          189 -LFGATVHDGRIIVAA  203 (315)
T ss_dssp             -SCEEEEETTEEEEEE
T ss_pred             -ceEEEEECCEEEEEe
Confidence             223445688999865

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=93.29  E-value=3.1  Score=34.64  Aligned_cols=51  Identities=10%  Similarity=0.021  Sum_probs=32.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGL-YFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~-~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .+|.|..+|..+++......+. .....+++  +++ ++++-+..+.|..+++..
T Consensus       151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEESSS
T ss_pred             CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCC
Confidence            3677888887766655444332 23345555  677 445555678999999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=92.41  E-value=6  Score=35.67  Aligned_cols=52  Identities=8%  Similarity=-0.026  Sum_probs=31.7

Q ss_pred             CCceEEEEeCCCCeEEEEecCc-------cccceeEEecCCCEEEEEeCC-----CCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGL-------YFANGVALSKHGDFVVVCESW-----KFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~-------~~pngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~  100 (224)
                      .++.|+.+|.++|+...-....       .......+. + +.+||....     .+.|+.++..+
T Consensus       136 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~-~~v~v~~~~~~~~~~g~v~a~D~~t  199 (677)
T 1kb0_A          136 WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-K-GKVIIGNGGAEYGVRGYITAYDAET  199 (677)
T ss_dssp             TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTT
T ss_pred             CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-C-CEEEEEecccccCCCCEEEEEECCC
Confidence            4688999999878755333221       111223333 3 468888753     57899998864

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.27  E-value=3.6  Score=32.77  Aligned_cols=126  Identities=14%  Similarity=0.022  Sum_probs=68.0

Q ss_pred             CceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeeccCCCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIENLPGGPD  118 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~~~p~  118 (224)
                      ...++++|+.+++++.+.+ ...|   ...+. -++ .|||.-..      .+.+++|++...   ..+.........-.
T Consensus       116 ~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~  189 (315)
T 4asc_A          116 LDSVMCYDRLSFKWGESDP-LPYVVYGHTVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF---EWKELAPMQTARSL  189 (315)
T ss_dssp             CCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTT---EEEECCCCSSCCBS
T ss_pred             cceEEEECCCCCcEeECCC-CCCcccceeEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCC---eEEECCCCCCchhc
Confidence            4569999998888887642 2222   23333 344 58887533      357999998642   22222111111111


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccc
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISF  197 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~  197 (224)
                      .-++--++.+|+..+....                               .....+.++|++...-..+. .|...   .
T Consensus       190 ~~~~~~~~~iyv~GG~~~~-------------------------------~~~~~~~~yd~~~~~W~~~~~~p~~r---~  235 (315)
T 4asc_A          190 FGATVHDGRIIVAAGVTDT-------------------------------GLTSSAEVYSITDNKWAPFEAFPQER---S  235 (315)
T ss_dssp             CEEEEETTEEEEEEEECSS-------------------------------SEEEEEEEEETTTTEEEEECCCSSCC---B
T ss_pred             eEEEEECCEEEEEeccCCC-------------------------------CccceEEEEECCCCeEEECCCCCCcc---c
Confidence            2222336789998775521                               11267899998754333333 23222   1


Q ss_pred             eeEEEEECCEEEEEeC
Q 046107          198 VTSALEFQGNLYLASI  213 (224)
Q Consensus       198 ~t~~~~~~g~lyv~~~  213 (224)
                      ...++..+++||+-.-
T Consensus       236 ~~~~~~~~~~l~v~GG  251 (315)
T 4asc_A          236 SLSLVSLVGTLYAIGG  251 (315)
T ss_dssp             SCEEEEETTEEEEEEE
T ss_pred             ceeEEEECCEEEEECC
Confidence            2234556889998653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.22  E-value=2.5  Score=36.90  Aligned_cols=32  Identities=3%  Similarity=-0.366  Sum_probs=23.8

Q ss_pred             ccccceeEEecC------CCEEEEEeCCCCeEEEEEccC
Q 046107           68 LYFANGVALSKH------GDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        68 ~~~pngia~~~d------g~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      ....+.++|+|+      ++ ++++-+..+.|..+++..
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~  244 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIID  244 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCC
T ss_pred             CCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCC
Confidence            345678999997      45 666666778899999864

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.67  E-value=5  Score=33.17  Aligned_cols=63  Identities=3%  Similarity=-0.143  Sum_probs=35.7

Q ss_pred             ecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC--CeEEEEec--CccccceeEEec-CCCEEEEEeCCC---
Q 046107           19 ASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS--KQVSIVLE--GLYFANGVALSK-HGDFVVVCESWK---   90 (224)
Q Consensus        19 ~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~--g~~~~~~~--~~~~pngia~~~-dg~~Lyv~~~~~---   90 (224)
                      +.+|+||+...                  .| +++++.+.  ..++....  .......|+++| +.+.||++....   
T Consensus        20 d~~g~l~vgt~------------------~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g   80 (394)
T 3b7f_A           20 SGPVMLLVATI------------------KG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLG   80 (394)
T ss_dssp             CSCCEEEEEET------------------TE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CC
T ss_pred             CCCCEEEEEec------------------Cc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCC
Confidence            44678998752                  24 66666432  35654421  223456899998 333598886432   


Q ss_pred             CeEEEEEccC
Q 046107           91 FRCIKHWLKL  100 (224)
Q Consensus        91 ~~I~~~~~~~  100 (224)
                      ..|++.+-.|
T Consensus        81 ~gl~~s~D~G   90 (394)
T 3b7f_A           81 PTVFRSDDGG   90 (394)
T ss_dssp             EEEEEESSTT
T ss_pred             ccEEEeCCCC
Confidence            1677765434

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.22  E-value=2.8  Score=37.34  Aligned_cols=107  Identities=11%  Similarity=0.014  Sum_probs=66.0

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCC------Ce-------EEEEecCccccceeEEe
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSS------KQ-------VSIVLEGLYFANGVALS   77 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~------g~-------~~~~~~~~~~pngia~~   77 (224)
                      ++|+++.++|||.-.+..-                ....++..+|.++      ++       +..-.+...+|--.+|+
T Consensus       323 ksPHGv~vsPDGkyi~v~G----------------KLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd  386 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAG----------------KLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD  386 (638)
T ss_dssp             SSCCCEEECTTSCEEEEEC----------------TTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC
T ss_pred             CCCcceeeCCCCCEEEEcC----------------CCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC
Confidence            7899999999996555431                2344455555321      11       11123346778889999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCC---Cccc-ceEeec--cCCCC------CCceEECCCCCEEEEEec
Q 046107           78 KHGDFVVVCESWKFRCIKHWLKLG---DKRD-REIFIE--NLPGG------PDNINLAPDGSFWISLIK  134 (224)
Q Consensus        78 ~dg~~Lyv~~~~~~~I~~~~~~~~---~~~~-~~~~~~--~~~~~------p~~i~~d~dG~l~va~~~  134 (224)
                      ++| ..|.+-....+|.+++++..   ..++ ...+.+  .....      +.|=..++||.++++...
T Consensus       387 ~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          387 GRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             SSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             CCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            999 69999999999999998631   0011 111221  12223      344455899999988754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.61  E-value=5.5  Score=31.71  Aligned_cols=124  Identities=17%  Similarity=0.120  Sum_probs=66.3

Q ss_pred             ceEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeeccCCC-CCCc
Q 046107           49 GQLLRYDPSSKQVSIVLEG--LYFANGVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIENLPG-GPDN  119 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~--~~~pngia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~~  119 (224)
                      ..++++|+.+.+++.+..-  ...-...+. -++ .|||.-..      .+.+++|++...   ..+........ .--.
T Consensus       127 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~  201 (318)
T 2woz_A          127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKG---DWKDLAPMKTPRSMFG  201 (318)
T ss_dssp             EEEEEEETTTTEEEEECCCSSCEESCEEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTT---EEEEECCCSSCCBSCE
T ss_pred             ceEEEEeCCCCCEeECCCCCCcccccEEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCC---EEEECCCCCCCcccce
Confidence            4689999988888876421  111223443 355 58886421      356999998642   22222211111 1122


Q ss_pred             eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccce
Q 046107          120 INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISFV  198 (224)
Q Consensus       120 i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~~  198 (224)
                      +++ -++.||+..+.....                               ....+.++|++. ++...-..|...   ..
T Consensus       202 ~~~-~~~~iyv~GG~~~~~-------------------------------~~~~~~~yd~~~~~W~~~~~~p~~r---~~  246 (318)
T 2woz_A          202 VAI-HKGKIVIAGGVTEDG-------------------------------LSASVEAFDLKTNKWEVMTEFPQER---SS  246 (318)
T ss_dssp             EEE-ETTEEEEEEEEETTE-------------------------------EEEEEEEEETTTCCEEECCCCSSCC---BS
T ss_pred             EEE-ECCEEEEEcCcCCCC-------------------------------ccceEEEEECCCCeEEECCCCCCcc---cc
Confidence            333 468899987654210                               115788999874 443332223322   12


Q ss_pred             eEEEEECCEEEEEe
Q 046107          199 TSALEFQGNLYLAS  212 (224)
Q Consensus       199 t~~~~~~g~lyv~~  212 (224)
                      ..++..+++||+-.
T Consensus       247 ~~~~~~~~~i~v~G  260 (318)
T 2woz_A          247 ISLVSLAGSLYAIG  260 (318)
T ss_dssp             CEEEEETTEEEEEC
T ss_pred             eEEEEECCEEEEEC
Confidence            34456788999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=90.61  E-value=4.9  Score=31.18  Aligned_cols=85  Identities=8%  Similarity=-0.030  Sum_probs=54.2

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-CCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .+.|..++..................++++++++.++++. ...+.|..++.....  ....+. .-.+....+++.++|
T Consensus       220 ~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~-gH~~~V~~l~~spdg  296 (318)
T 4ggc_A          220 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELK-GHTSRVLSLTMSPDG  296 (318)
T ss_dssp             TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTS
T ss_pred             CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCC
Confidence            4455555655444444444455567889999999887765 457889999986421  122222 112345789999999


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      ++.++....
T Consensus       297 ~~l~S~s~D  305 (318)
T 4ggc_A          297 ATVASAAAD  305 (318)
T ss_dssp             SCEEEEETT
T ss_pred             CEEEEEecC
Confidence            988776665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.75  E-value=6.4  Score=31.18  Aligned_cols=134  Identities=10%  Similarity=0.013  Sum_probs=71.0

Q ss_pred             ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeC-----CCCeEEEEEccCCCcccceEeeccC-CCCCCc
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCES-----WKFRCIKHWLKLGDKRDREIFIENL-PGGPDN  119 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~-~~~p~~  119 (224)
                      ..++++|+.+.+++.+.. ...|   .+.+.. ++ .|||.-.     ....+++|++...   ..+...... +..--.
T Consensus        90 ~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~  163 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAP-MSVPRNRIGVGVI-DG-HIYAVGGSHGCIHHNSVERYEPERD---EWHLVAPMLTRRIGVG  163 (308)
T ss_dssp             CCEEEEETTTTEEEECCC-CSSCCBTCEEEEE-TT-EEEEECCEETTEECCCEEEEETTTT---EEEECCCCSSCCBSCE
T ss_pred             ceEEEECCCCCeEeECCC-CCcCccccEEEEE-CC-EEEEEcCCCCCcccccEEEECCCCC---eEeECCCCCccccceE
Confidence            468999998888887642 2222   233333 45 5888732     1357889998642   222221111 111122


Q ss_pred             eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccce
Q 046107          120 INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFV  198 (224)
Q Consensus       120 i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~  198 (224)
                      +++ -++.+|+..+.....                               ....+.++|++...-..+. .|...  .. 
T Consensus       164 ~~~-~~~~iyv~GG~~~~~-------------------------------~~~~~~~yd~~~~~W~~~~~~p~~r--~~-  208 (308)
T 1zgk_A          164 VAV-LNRLLYAVGGFDGTN-------------------------------RLNSAECYYPERNEWRMITAMNTIR--SG-  208 (308)
T ss_dssp             EEE-ETTEEEEECCBCSSC-------------------------------BCCCEEEEETTTTEEEECCCCSSCC--BS-
T ss_pred             EEE-ECCEEEEEeCCCCCC-------------------------------cCceEEEEeCCCCeEeeCCCCCCcc--cc-
Confidence            333 268899876544210                               0156889998754333332 22221  22 


Q ss_pred             eEEEEECCEEEEEeCC-----CCeEEEeeC
Q 046107          199 TSALEFQGNLYLASIN-----SNFIGKLPL  223 (224)
Q Consensus       199 t~~~~~~g~lyv~~~~-----~~~i~~~~~  223 (224)
                      ..++..+++||+-.-.     .+.+.++++
T Consensus       209 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          209 AGVCVLHNCIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             CEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             ceEEEECCEEEEEeCCCCCCccceEEEEeC
Confidence            2344568899987633     255666664

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.61  E-value=6.4  Score=31.00  Aligned_cols=140  Identities=5%  Similarity=-0.072  Sum_probs=72.6

Q ss_pred             CceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeC------CCCeEEEEEccCCCcccceEeeccCCCCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCES------WKFRCIKHWLKLGDKRDREIFIENLPGGPD  118 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~------~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~  118 (224)
                      ...++++|+.+++++.+.. +..|   ...+.. ++ .|||.-.      ....+++|++...   ..+.........-.
T Consensus        69 ~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~  142 (306)
T 3ii7_A           69 IKRMDCYNVVKDSWYSKLG-PPTPRDSLAACAA-EG-KIYTSGGSEVGNSALYLFECYDTRTE---SWHTKPSMLTQRCS  142 (306)
T ss_dssp             CCEEEEEETTTTEEEEEEC-CSSCCBSCEEEEE-TT-EEEEECCBBTTBSCCCCEEEEETTTT---EEEEECCCSSCCBS
T ss_pred             cceEEEEeCCCCeEEECCC-CCccccceeEEEE-CC-EEEEECCCCCCCcEeeeEEEEeCCCC---ceEeCCCCcCCcce
Confidence            4679999998888887643 2222   233333 44 5888643      2357999998642   22222211111112


Q ss_pred             ceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccc
Q 046107          119 NINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISF  197 (224)
Q Consensus       119 ~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~  197 (224)
                      ..++.-+|.+|+..+......                           .......+.++|++...-..+. .|...  . 
T Consensus       143 ~~~~~~~~~iyv~GG~~~~~~---------------------------~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~-  192 (306)
T 3ii7_A          143 HGMVEANGLIYVCGGSLGNNV---------------------------SGRVLNSCEVYDPATETWTELCPMIEAR--K-  192 (306)
T ss_dssp             CEEEEETTEEEEECCEESCTT---------------------------TCEECCCEEEEETTTTEEEEECCCSSCC--B-
T ss_pred             eEEEEECCEEEEECCCCCCCC---------------------------cccccceEEEeCCCCCeEEECCCccchh--h-
Confidence            222234788999766432100                           0000156889998754434443 23221  2 


Q ss_pred             eeEEEEECCEEEEEeCC-----CCeEEEeeC
Q 046107          198 VTSALEFQGNLYLASIN-----SNFIGKLPL  223 (224)
Q Consensus       198 ~t~~~~~~g~lyv~~~~-----~~~i~~~~~  223 (224)
                      ...++..+++||+-.-.     .+.+.++++
T Consensus       193 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          193 NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             SCEEEEETTEEEEECCEETTEEBCCEEEEET
T ss_pred             cceEEEECCEEEEEeCCCCCCCCceEEEeeC
Confidence            22344568899987432     244555553

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.05  E-value=6.6  Score=31.22  Aligned_cols=122  Identities=14%  Similarity=0.038  Sum_probs=64.7

Q ss_pred             eEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-------CCeEEEEEccCCCcccceEeeccCCC--CC
Q 046107           50 QLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW-------KFRCIKHWLKLGDKRDREIFIENLPG--GP  117 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~-------~~~I~~~~~~~~~~~~~~~~~~~~~~--~p  117 (224)
                      .++++|+.+++++.+. ....|   .+++.. ++ .|||.-..       .+.+++|++...   +.+... ..+.  .-
T Consensus        79 ~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~-~~p~~r~~  151 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLP-PLPSARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAA---KWSEVK-NLPIKVYG  151 (318)
T ss_dssp             EEEEEETTTTEEEECS-CBSSCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTT---EEEEEC-CCSSCEES
T ss_pred             cEEEEeCCCCcEEECC-CCCccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCC---CEeECC-CCCCcccc
Confidence            4899999888887663 22222   244433 44 58886422       246888988642   222222 1121  11


Q ss_pred             CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCccc
Q 046107          118 DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNIS  196 (224)
Q Consensus       118 ~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~  196 (224)
                      -.+++ .+|.||+..+....                              ......+.++|++...-..+. .|...  .
T Consensus       152 ~~~~~-~~~~iyv~GG~~~~------------------------------~~~~~~~~~yd~~~~~W~~~~~~p~~r--~  198 (318)
T 2woz_A          152 HNVIS-HNGMIYCLGGKTDD------------------------------KKCTNRVFIYNPKKGDWKDLAPMKTPR--S  198 (318)
T ss_dssp             CEEEE-ETTEEEEECCEESS------------------------------SCBCCCEEEEETTTTEEEEECCCSSCC--B
T ss_pred             cEEEE-ECCEEEEEcCCCCC------------------------------CCccceEEEEcCCCCEEEECCCCCCCc--c
Confidence            22333 57889987654210                              001156899998754333332 23222  2


Q ss_pred             ceeEEEEECCEEEEEe
Q 046107          197 FVTSALEFQGNLYLAS  212 (224)
Q Consensus       197 ~~t~~~~~~g~lyv~~  212 (224)
                      . ..++..+++||+-.
T Consensus       199 ~-~~~~~~~~~iyv~G  213 (318)
T 2woz_A          199 M-FGVAIHKGKIVIAG  213 (318)
T ss_dssp             S-CEEEEETTEEEEEE
T ss_pred             c-ceEEEECCEEEEEc
Confidence            2 23455688999875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.85  E-value=7.2  Score=30.56  Aligned_cols=137  Identities=12%  Similarity=0.034  Sum_probs=72.3

Q ss_pred             CceEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeC-----CCCeEEEEEccCCCcccceEeeccCCCCCCce
Q 046107           48 HGQLLRYDPSSKQVSIVLEGL--YFANGVALSKHGDFVVVCES-----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNI  120 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~--~~pngia~~~dg~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i  120 (224)
                      ...++++|+.+++++.+..-.  ....+.+.. ++ .||+.-.     ..+.+++|++...   ..+.........-...
T Consensus       127 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~  201 (301)
T 2vpj_A          127 HTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SG-VIYCLGGYDGLNILNSVEKYDPHTG---HWTNVTPMATKRSGAG  201 (301)
T ss_dssp             CCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTTT---EEEEECCCSSCCBSCE
T ss_pred             cceEEEEcCCCCeEEECCCCCCCcccceEEEE-CC-EEEEECCCCCCcccceEEEEeCCCC---cEEeCCCCCcccccce
Confidence            457999999888888764321  111233333 55 5888742     2467999998642   2222221111111112


Q ss_pred             EECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCccccee
Q 046107          121 NLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFVT  199 (224)
Q Consensus       121 ~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~t  199 (224)
                      ++--++.+|+..+.....                               ....+.++|++...-..+. .|...  . ..
T Consensus       202 ~~~~~~~i~v~GG~~~~~-------------------------------~~~~v~~yd~~~~~W~~~~~~p~~r--~-~~  247 (301)
T 2vpj_A          202 VALLNDHIYVVGGFDGTA-------------------------------HLSSVEAYNIRTDSWTTVTSMTTPR--C-YV  247 (301)
T ss_dssp             EEEETTEEEEECCBCSSS-------------------------------BCCCEEEEETTTTEEEEECCCSSCC--B-SC
T ss_pred             EEEECCEEEEEeCCCCCc-------------------------------ccceEEEEeCCCCcEEECCCCCCcc--c-ce
Confidence            222367899876554210                               0156889998744333332 23322  1 22


Q ss_pred             EEEEECCEEEEEeCCC-----CeEEEeeC
Q 046107          200 SALEFQGNLYLASINS-----NFIGKLPL  223 (224)
Q Consensus       200 ~~~~~~g~lyv~~~~~-----~~i~~~~~  223 (224)
                      .++..+++||+-.-.+     +.|.++++
T Consensus       248 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          248 GATVLRGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             EEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred             eEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence            3445688999876432     45566654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.73  E-value=7.5  Score=30.60  Aligned_cols=126  Identities=8%  Similarity=-0.076  Sum_probs=67.2

Q ss_pred             CceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeC----CCCeEEEEEccCCCcccceEeeccCCCCCCce
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCES----WKFRCIKHWLKLGDKRDREIFIENLPGGPDNI  120 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i  120 (224)
                      ...++++|+.+++++.+.. ...|   ..++. -++ .|||.-.    ..+.+++|++...   ............-...
T Consensus        23 ~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~   96 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRC-PFEKRRDAACVF-WDN-VVYILGGSQLFPIKRMDCYNVVKD---SWYSKLGPPTPRDSLA   96 (306)
T ss_dssp             TTSEEEEETTTTEEEECCC-CSCCCBSCEEEE-ETT-EEEEECCBSSSBCCEEEEEETTTT---EEEEEECCSSCCBSCE
T ss_pred             CceEEEecCCCCCEecCCC-CCcccceeEEEE-ECC-EEEEEeCCCCCCcceEEEEeCCCC---eEEECCCCCcccccee
Confidence            4579999998888886642 2222   23333 344 5888753    2468999998642   2222221111111122


Q ss_pred             EECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCccccee
Q 046107          121 NLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFVT  199 (224)
Q Consensus       121 ~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~t  199 (224)
                      ++--++.+|+..+....                              ......+.++|+....-..+. .|...  . ..
T Consensus        97 ~~~~~~~iyv~GG~~~~------------------------------~~~~~~~~~~d~~~~~W~~~~~~p~~r--~-~~  143 (306)
T 3ii7_A           97 ACAAEGKIYTSGGSEVG------------------------------NSALYLFECYDTRTESWHTKPSMLTQR--C-SH  143 (306)
T ss_dssp             EEEETTEEEEECCBBTT------------------------------BSCCCCEEEEETTTTEEEEECCCSSCC--B-SC
T ss_pred             EEEECCEEEEECCCCCC------------------------------CcEeeeEEEEeCCCCceEeCCCCcCCc--c-ee
Confidence            22236889987664310                              001156889998754433332 23222  2 22


Q ss_pred             EEEEECCEEEEEe
Q 046107          200 SALEFQGNLYLAS  212 (224)
Q Consensus       200 ~~~~~~g~lyv~~  212 (224)
                      .++..+++||+-.
T Consensus       144 ~~~~~~~~iyv~G  156 (306)
T 3ii7_A          144 GMVEANGLIYVCG  156 (306)
T ss_dssp             EEEEETTEEEEEC
T ss_pred             EEEEECCEEEEEC
Confidence            3345688999875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.37  E-value=7.8  Score=30.37  Aligned_cols=139  Identities=10%  Similarity=-0.084  Sum_probs=72.7

Q ss_pred             CceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-----CCeEEEEEccCCCcccceEeeccCCCCCCc
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW-----KFRCIKHWLKLGDKRDREIFIENLPGGPDN  119 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~  119 (224)
                      ...++++|+.+++++.+.. +..+   .+.+. -++ .||+.-..     .+.+++|++........+.........-..
T Consensus        30 ~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~  106 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPS-ITRKRRYVASVS-LHD-RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA  106 (301)
T ss_dssp             CCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETT-EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC
T ss_pred             eeEEEEEcCCCCeEEeCCC-CChhhccccEEE-ECC-EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce
Confidence            4569999998888877642 2222   23333 344 58886432     357999998643211133332211111122


Q ss_pred             eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccce
Q 046107          120 INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISFV  198 (224)
Q Consensus       120 i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~~  198 (224)
                      .++--++.+|+..+....                               .....+.++|+.. ++...-..|...  .. 
T Consensus       107 ~~~~~~~~lyv~GG~~~~-------------------------------~~~~~~~~~d~~~~~W~~~~~~p~~r--~~-  152 (301)
T 2vpj_A          107 GATTLGDMIYVSGGFDGS-------------------------------RRHTSMERYDPNIDQWSMLGDMQTAR--EG-  152 (301)
T ss_dssp             EEEEETTEEEEECCBCSS-------------------------------CBCCEEEEEETTTTEEEEEEECSSCC--BS-
T ss_pred             eEEEECCEEEEEcccCCC-------------------------------cccceEEEEcCCCCeEEECCCCCCCc--cc-
Confidence            222236889998665421                               0115789999874 443333334332  22 


Q ss_pred             eEEEEECCEEEEEeCC-----CCeEEEeeC
Q 046107          199 TSALEFQGNLYLASIN-----SNFIGKLPL  223 (224)
Q Consensus       199 t~~~~~~g~lyv~~~~-----~~~i~~~~~  223 (224)
                      ..++..+++||+-.-.     .+.+.++++
T Consensus       153 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~  182 (301)
T 2vpj_A          153 AGLVVASGVIYCLGGYDGLNILNSVEKYDP  182 (301)
T ss_dssp             CEEEEETTEEEEECCBCSSCBCCCEEEEET
T ss_pred             ceEEEECCEEEEECCCCCCcccceEEEEeC
Confidence            2334468899987432     345666653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=87.85  E-value=3.2  Score=37.60  Aligned_cols=83  Identities=20%  Similarity=0.294  Sum_probs=51.3

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC--CCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP--GGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~d  125 (224)
                      .|.|.-+|+.+|+...........++-.+...++.+|++ +..+.|+.|+.+.++    .+|.-..+  ....-+.+..+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~----~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGE----KLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCc----cceeeeCCCCcccCceEEEEC
Confidence            388999999988765433221212344566667777877 567899999987432    12221122  12233666788


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      |+.||+...+
T Consensus       529 G~qyv~~~~G  538 (689)
T 1yiq_A          529 GEQYVTFMAG  538 (689)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999997655

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=87.35  E-value=15  Score=32.62  Aligned_cols=69  Identities=16%  Similarity=0.112  Sum_probs=45.0

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeC-C
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCES-W   89 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~-~   89 (224)
                      .++++..+|.||+.=-.                ....++++|+.+++++.+.. +..+   .+.++.+||+ |||.-. .
T Consensus       246 ~~~~~~~~g~lyv~GG~----------------~~~~v~~yd~~t~~W~~~~~-~~~~R~~~s~~~~~dg~-iyv~GG~~  307 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGN----------------DAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSDGR-VFTIGGSW  307 (656)
T ss_dssp             CEEEECTTSCEEEECSS----------------STTCEEEEEGGGTEEEECCC-CSSCCSSCEEEECTTSC-EEEECCCC
T ss_pred             ccccCCCCCCEEEeCCC----------------CCCceEEecCcCCceeECCC-CCccccccceEEecCCe-EEEEeCcc
Confidence            34666778888887311                12369999998888876642 2222   3566667887 888754 2


Q ss_pred             -----CCeEEEEEccC
Q 046107           90 -----KFRCIKHWLKL  100 (224)
Q Consensus        90 -----~~~I~~~~~~~  100 (224)
                           ...+.+|++..
T Consensus       308 ~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          308 SGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             CSSSCCCCEEEEETTT
T ss_pred             cCCcccccceEeCCCC
Confidence                 25688898853

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.11  E-value=11  Score=29.59  Aligned_cols=134  Identities=9%  Similarity=0.012  Sum_probs=70.5

Q ss_pred             ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-------CCeEEEEEccCCCcccceEeeccCCC-CC
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW-------KFRCIKHWLKLGDKRDREIFIENLPG-GP  117 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~-------~~~I~~~~~~~~~~~~~~~~~~~~~~-~p  117 (224)
                      ..++++|+.+.+++.+.. ...|   .+.+.. ++ .||+.-..       .+.+++|++...   ..+........ .-
T Consensus       124 ~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~  197 (302)
T 2xn4_A          124 SSVEAYNIKSNEWFHVAP-MNTRRSSVGVGVV-GG-LLYAVGGYDVASRQCLSTVECYNATTN---EWTYIAEMSTRRSG  197 (302)
T ss_dssp             EEEEEEETTTTEEEEECC-CSSCCBSCEEEEE-TT-EEEEECCEETTTTEECCCEEEEETTTT---EEEEECCCSSCCBS
T ss_pred             ceEEEEeCCCCeEeecCC-CCCcccCceEEEE-CC-EEEEEeCCCCCCCccccEEEEEeCCCC---cEEECCCCcccccc
Confidence            468899998888887642 2222   233333 44 58887421       356899998642   22222211111 11


Q ss_pred             CceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCccc
Q 046107          118 DNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNIS  196 (224)
Q Consensus       118 ~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~  196 (224)
                      -.+++ -++.||+..+.....                               ....+.++|++...-..+. .|...   
T Consensus       198 ~~~~~-~~~~iyv~GG~~~~~-------------------------------~~~~~~~yd~~~~~W~~~~~~~~~r---  242 (302)
T 2xn4_A          198 AGVGV-LNNLLYAVGGHDGPL-------------------------------VRKSVEVYDPTTNAWRQVADMNMCR---  242 (302)
T ss_dssp             CEEEE-ETTEEEEECCBSSSS-------------------------------BCCCEEEEETTTTEEEEECCCSSCC---
T ss_pred             ccEEE-ECCEEEEECCCCCCc-------------------------------ccceEEEEeCCCCCEeeCCCCCCcc---
Confidence            12222 368899886544210                               1146889998754333333 23221   


Q ss_pred             ceeEEEEECCEEEEEeCCC-----CeEEEeeC
Q 046107          197 FVTSALEFQGNLYLASINS-----NFIGKLPL  223 (224)
Q Consensus       197 ~~t~~~~~~g~lyv~~~~~-----~~i~~~~~  223 (224)
                      ....++..+++||+-.-.+     +.+.+|++
T Consensus       243 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             BSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             ccCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence            1223455688999875432     34666654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=85.27  E-value=2.6  Score=34.77  Aligned_cols=73  Identities=11%  Similarity=-0.000  Sum_probs=47.8

Q ss_pred             ccccceEEec--------CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-eEEEEecCccccceeEEecCCC
Q 046107           11 RFANDVIEAS--------DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-QVSIVLEGLYFANGVALSKHGD   81 (224)
Q Consensus        11 ~~~n~v~~~~--------~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-~~~~~~~~~~~pngia~~~dg~   81 (224)
                      ...++|++.|        ||++.++-.                 .++.|-.+|..++ ..............++|+|++.
T Consensus       137 ~~v~~v~~~p~~~~~~~~d~~~las~s-----------------~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~  199 (393)
T 4gq1_A          137 NFVNDIDIADVYSADNRLAEQVIASVG-----------------DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNP  199 (393)
T ss_dssp             SCEEEEEEEEEECTTCSEEEEEEEEEE-----------------TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEE
T ss_pred             CceEEEEEccccccccCCCCCEEEEEE-----------------CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCC
Confidence            3456777765        677777642                 3566666664333 3333344445557999999886


Q ss_pred             EEEEEeCCCCeEEEEEccC
Q 046107           82 FVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~~  100 (224)
                      .++++-...+.|..+++..
T Consensus       200 ~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          200 NQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEEEEEETTSEEEEEETTC
T ss_pred             ceEEecCCCCEEEEEECCC
Confidence            6777777788999999863

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=84.85  E-value=14  Score=29.74  Aligned_cols=100  Identities=11%  Similarity=0.032  Sum_probs=51.9

Q ss_pred             ceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCC--CCeEEEEecCcccc---ceeEEecCCCEEEEEeCC
Q 046107           15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPS--SKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW   89 (224)
Q Consensus        15 ~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~   89 (224)
                      ..++.-++.||+.=     +.           ....++++|+.  +.+++.+.+-...|   .++++- ++ .|||.-..
T Consensus        13 ~~~~~~~~~iyv~G-----G~-----------~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~-~lyv~GG~   74 (357)
T 2uvk_A           13 GTGAIDNDTVYIGL-----GS-----------AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DG-NLYVFGGI   74 (357)
T ss_dssp             CEEEEETTEEEEEC-----GG-----------GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TT-EEEEECCE
T ss_pred             eEEEEECCEEEEEe-----Cc-----------CCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CC-EEEEEcCC
Confidence            44444478899872     10           12369999986  36777664311122   233333 44 59886422


Q ss_pred             ----------CCeEEEEEccCCCcccceEeeccCCC-CCCceEECCCCCEEEEEecC
Q 046107           90 ----------KFRCIKHWLKLGDKRDREIFIENLPG-GPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        90 ----------~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~dG~l~va~~~~  135 (224)
                                .+.+++|++...   ..+......|. .-..-++..+|.||+..+..
T Consensus        75 ~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           75 GKNSEGLTQVFNDVHKYNPKTN---SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EECTTSCEEECCCEEEEETTTT---EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             CCCCCccceeeccEEEEeCCCC---cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence                      356899998642   22222111111 11111223678899977654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=84.84  E-value=6.1  Score=34.96  Aligned_cols=83  Identities=19%  Similarity=0.111  Sum_probs=49.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCC--CCCceEEC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFAN-GVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPG--GPDNINLA  123 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pn-gia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d  123 (224)
                      ..|.|+.+|+.+|+...-.......+ +.... .++.+|+++ ..+.|+.++.+.++    .++.-..+.  ...-+++.
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~-~dg~l~A~D~~tG~----~lW~~~~~~g~~a~P~~y~  537 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGT-GDGYFKAFDAKSGK----ELWKFQTGSGIVSPPITWE  537 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEEC-TTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEEC-CCCcEEEEECCCCC----EEEEecCCCCcccCceEEE
Confidence            46899999998887543222111122 33333 355688865 57899999986432    123212222  12236666


Q ss_pred             CCCCEEEEEecC
Q 046107          124 PDGSFWISLIKM  135 (224)
Q Consensus       124 ~dG~l~va~~~~  135 (224)
                      .+|+.||+...+
T Consensus       538 ~~G~qYv~~~~G  549 (582)
T 1flg_A          538 QDGEQYLGVTVG  549 (582)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCEEEEEEEcc
Confidence            899999998765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=84.37  E-value=13  Score=29.07  Aligned_cols=134  Identities=10%  Similarity=-0.074  Sum_probs=71.8

Q ss_pred             ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeC-----CCCeEEEEEccCCCcccceEeeccCCC-CCCc
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCES-----WKFRCIKHWLKLGDKRDREIFIENLPG-GPDN  119 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~~~-~p~~  119 (224)
                      ..++++|+.+.+++.+. .+..+   .+++.. ++ .||+.-.     ..+.+++|++...   +.+........ .--.
T Consensus        30 ~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~  103 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVA-ELPSRRCRAGMVYM-AG-LVFAVGGFNGSLRVRTVDSYDPVKD---QWTSVANMRDRRSTLG  103 (302)
T ss_dssp             CCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE-TT-EEEEESCBCSSSBCCCEEEEETTTT---EEEEECCCSSCCBSCE
T ss_pred             CcEEEEcCcCCcEeEcc-cCCcccccceEEEE-CC-EEEEEeCcCCCccccceEEECCCCC---ceeeCCCCCccccceE
Confidence            46899999888887663 22222   244433 44 5888743     2357899998642   22222211111 1122


Q ss_pred             eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccce
Q 046107          120 INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFV  198 (224)
Q Consensus       120 i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~  198 (224)
                      +++ -+|.+|+..+....                               .....+.++|+....-..+. .|...  .. 
T Consensus       104 ~~~-~~~~iyv~GG~~~~-------------------------------~~~~~~~~~d~~~~~W~~~~~~p~~r--~~-  148 (302)
T 2xn4_A          104 AAV-LNGLLYAVGGFDGS-------------------------------TGLSSVEAYNIKSNEWFHVAPMNTRR--SS-  148 (302)
T ss_dssp             EEE-ETTEEEEEEEECSS-------------------------------CEEEEEEEEETTTTEEEEECCCSSCC--BS-
T ss_pred             EEE-ECCEEEEEcCCCCC-------------------------------ccCceEEEEeCCCCeEeecCCCCCcc--cC-
Confidence            333 36889988765421                               11267899998754434333 23221  22 


Q ss_pred             eEEEEECCEEEEEeCC-------CCeEEEeeC
Q 046107          199 TSALEFQGNLYLASIN-------SNFIGKLPL  223 (224)
Q Consensus       199 t~~~~~~g~lyv~~~~-------~~~i~~~~~  223 (224)
                      ..++..+++||+-.-.       .+.+.++++
T Consensus       149 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~  180 (302)
T 2xn4_A          149 VGVGVVGGLLYAVGGYDVASRQCLSTVECYNA  180 (302)
T ss_dssp             CEEEEETTEEEEECCEETTTTEECCCEEEEET
T ss_pred             ceEEEECCEEEEEeCCCCCCCccccEEEEEeC
Confidence            2344568899996422       345666654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=83.90  E-value=24  Score=31.66  Aligned_cols=52  Identities=10%  Similarity=0.022  Sum_probs=31.0

Q ss_pred             CCceEEEEeCCCCeEEEEecCc------cccceeEEecCCCEEEEEeCC-----CCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGL------YFANGVALSKHGDFVVVCESW-----KFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~------~~pngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~  100 (224)
                      .+|.|+.+|.++|+...-....      ......++. ++ .+||....     .+.|+.+++.+
T Consensus       125 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~t  187 (668)
T 1kv9_A          125 LDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADT  187 (668)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTT
T ss_pred             CCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCC
Confidence            4688999998878754332211      111223333 33 58887643     47888888864

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=83.77  E-value=5.3  Score=32.96  Aligned_cols=53  Identities=9%  Similarity=-0.085  Sum_probs=29.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCcc-ccceeEEe----cCCCEEEEEe-CCCCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLY-FANGVALS----KHGDFVVVCE-SWKFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~-~pngia~~----~dg~~Lyv~~-~~~~~I~~~~~~~  100 (224)
                      .+|.|+-+|.++|+.....+... .|- +...    +++..+|+.+ +.+++|+.++..+
T Consensus        18 ~dG~l~Ald~~tG~~~W~~~~~~~~p~-~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~   76 (339)
T 2be1_A           18 VEGGLHAVDRRNGHIIWSIEPENFQPL-IEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ   76 (339)
T ss_dssp             TTSCEEEEETTTTEEEEEECGGGSCCS-EECCCSCTTTSSEEEEECCSTTTEEEEEETTT
T ss_pred             CCCeEEEEECCCCcEEEEecCCccCCc-EEecCCccccCCcEEEEEECCCCEEEEEECCC
Confidence            35778888877676554332110 110 1100    1223577776 6788999998754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.35  E-value=16  Score=32.95  Aligned_cols=86  Identities=8%  Similarity=0.009  Sum_probs=47.9

Q ss_pred             eEEEEeCCCCeEEEEecC--cccc----ceeEEecCCCEEEEEeCC-------CCeEEEEEccCCCc---ccceEeecc-
Q 046107           50 QLLRYDPSSKQVSIVLEG--LYFA----NGVALSKHGDFVVVCESW-------KFRCIKHWLKLGDK---RDREIFIEN-  112 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~~~--~~~p----ngia~~~dg~~Lyv~~~~-------~~~I~~~~~~~~~~---~~~~~~~~~-  112 (224)
                      .++++|+.+++++.+...  ...|    ..++++.+.+.|||.-..       .+.+++|++....-   -..+..... 
T Consensus       514 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p  593 (695)
T 2zwa_A          514 AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP  593 (695)
T ss_dssp             SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG
T ss_pred             CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC
Confidence            799999998888877532  2222    235666663469887632       36799999875320   001222211 


Q ss_pred             -CCCCCCceEECCCCCEEEEEecC
Q 046107          113 -LPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus       113 -~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                       .+..--.+++-.+|.||+..+..
T Consensus       594 ~~~R~~~~~~~~~~~~iyv~GG~~  617 (695)
T 2zwa_A          594 LFQRYGSQIKYITPRKLLIVGGTS  617 (695)
T ss_dssp             GGCCBSCEEEEEETTEEEEECCBC
T ss_pred             CCCcccceEEEeCCCEEEEECCcc
Confidence             11122233443348899976643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=83.23  E-value=18  Score=29.94  Aligned_cols=115  Identities=13%  Similarity=-0.029  Sum_probs=58.0

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-----cCccccceeEEecCCCEEEE
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-----EGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-----~~~~~pngia~~~dg~~Lyv   85 (224)
                      .....+++.++|.+.++-.+.   ..  ..++..+..++.+-.+++++++.....     ++.. ..-+..+.++. +.+
T Consensus       227 ~~v~~vafSpdG~~lvs~s~~---~~--~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~lsg~~sg~-~lA  299 (356)
T 2w18_A          227 ASVCHKAYSEMGLLFIVLSHP---CA--KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRFLEGDVKDH-CAA  299 (356)
T ss_dssp             CCCEEEEEEETTEEEEEEC-----------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCEEEEEEETT-EEE
T ss_pred             eeeEEEEECCCCCEEEEeccC---CC--cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-ceeEccccCCC-EEE
Confidence            345566889999877664320   00  112334456777777888776543221     1110 01112222343 556


Q ss_pred             EeCCCCeEEEEEccCCCcccceEeeccCCCCCC-ceEECCCCCEEEEEecC
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFIENLPGGPD-NINLAPDGSFWISLIKM  135 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~-~i~~d~dG~l~va~~~~  135 (224)
                      +-+..+.|..+++..++  ....+. +....+. .+++.|||.+.++....
T Consensus       300 SgS~DgTIkIWDl~tGk--~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D  347 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQ--CTALLP-PVSDQHWSFVKWSGTDSHLLAGQKD  347 (356)
T ss_dssp             EEETTSCEEEEETTTCS--EEEEEC-CC--CCCCEEEECSSSSEEEEECTT
T ss_pred             EEcCCCcEEEEECCCCc--EEEEec-CCCCCeEEEEEECCCCCEEEEEECC
Confidence            66677889999986432  112221 1112233 47899999988776655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=83.15  E-value=2.1  Score=35.38  Aligned_cols=50  Identities=12%  Similarity=0.019  Sum_probs=21.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      ..|.|+.+|+++|+.......   +..+..+|+++.||++.. .+.|+.++++.
T Consensus       100 ~dg~v~a~D~~tG~~~w~~~~---~~~~~~~p~~~~v~~~~~-dg~v~a~d~~t  149 (369)
T 2hz6_A          100 KQDIWYVIDLLTGEKQQTLSS---AFADSLSPSTSLLYLGRT-EYTITMYDTKT  149 (369)
T ss_dssp             EEEEEEEECCC-------------------------EEEEEE-EEEEECCCSSS
T ss_pred             CCCEEEEEECCCCcEEEEecC---CCcccccccCCEEEEEec-CCEEEEEECCC
Confidence            356799999887765432211   113445667777888753 46888888864

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.57  E-value=16  Score=28.75  Aligned_cols=134  Identities=8%  Similarity=0.041  Sum_probs=70.4

Q ss_pred             ceEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-----CCeEEEEEccCCCcccceEeeccC-CCCCCc
Q 046107           49 GQLLRYDPSSKQVSIVLEGLYFA---NGVALSKHGDFVVVCESW-----KFRCIKHWLKLGDKRDREIFIENL-PGGPDN  119 (224)
Q Consensus        49 g~l~~~~~~~g~~~~~~~~~~~p---ngia~~~dg~~Lyv~~~~-----~~~I~~~~~~~~~~~~~~~~~~~~-~~~p~~  119 (224)
                      ..++++|+.+.+++.+.. +..+   ...+.. ++ .||+.-..     .+.+++|++...   ..+...... +..--.
T Consensus       137 ~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~  210 (308)
T 1zgk_A          137 NSVERYEPERDEWHLVAP-MLTRRIGVGVAVL-NR-LLYAVGGFDGTNRLNSAECYYPERN---EWRMITAMNTIRSGAG  210 (308)
T ss_dssp             CCEEEEETTTTEEEECCC-CSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTTT---EEEECCCCSSCCBSCE
T ss_pred             ccEEEECCCCCeEeECCC-CCccccceEEEEE-CC-EEEEEeCCCCCCcCceEEEEeCCCC---eEeeCCCCCCccccce
Confidence            468899998888886642 2222   233333 44 58887421     367999998642   222221111 111122


Q ss_pred             eEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEe-CCCCCcccce
Q 046107          120 INLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFN-DPNAKNISFV  198 (224)
Q Consensus       120 i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~-~~~g~~~~~~  198 (224)
                      +++. ++.||+..+.....                               ....+.++|++...-..+. .|...   ..
T Consensus       211 ~~~~-~~~iyv~GG~~~~~-------------------------------~~~~v~~yd~~~~~W~~~~~~p~~r---~~  255 (308)
T 1zgk_A          211 VCVL-HNCIYAAGGYDGQD-------------------------------QLNSVERYDVETETWTFVAPMKHRR---SA  255 (308)
T ss_dssp             EEEE-TTEEEEECCBCSSS-------------------------------BCCCEEEEETTTTEEEECCCCSSCC---BS
T ss_pred             EEEE-CCEEEEEeCCCCCC-------------------------------ccceEEEEeCCCCcEEECCCCCCCc---cc
Confidence            3332 67899876554210                               0156899998754333332 22221   12


Q ss_pred             eEEEEECCEEEEEeC-----CCCeEEEeeC
Q 046107          199 TSALEFQGNLYLASI-----NSNFIGKLPL  223 (224)
Q Consensus       199 t~~~~~~g~lyv~~~-----~~~~i~~~~~  223 (224)
                      ..++..+++||+-.-     ..+.+.++++
T Consensus       256 ~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          256 LGITVHQGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             CEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             eEEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence            234456889998753     2345666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	3e-30
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	0.003

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  112 bits (281), Expect = 3e-30
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 21/217 (9%)

Query: 2   IKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQV 61
           +K     L+   ND++       Y T       P     ++  G     +  Y P+  +V
Sbjct: 141 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV 200

Query: 62  SIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNIN 121
             V EG  FANG+ +S  G +V + E    +   +     +     + + +     DNI+
Sbjct: 201 --VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH-ANWTLTPLRVLSFDTLVDNIS 257

Query: 122 LAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANG 181
           + P                  V    N  ++     E        G         +S   
Sbjct: 258 VDPVTGDLW------------VGCHPNGMRIFFYDAENPP-----GSEVLRIQDILSEEP 300

Query: 182 SIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFI 218
            +   + +     +   T A  ++G L + ++    +
Sbjct: 301 KVTVVYAENG-TVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 17/128 (13%)

Query: 10  IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--- 66
           I  A   +   +G  YI     +            G+P G++LR D  + + +++ +   
Sbjct: 17  IPGAEGPVFDKNGDFYIVAPEVEVN----------GKPAGEILRIDLKTGKKTVICKPEV 66

Query: 67  --GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP-GGPDNINLA 123
                   G    +  +  +     +   +        +   +   E     G ++    
Sbjct: 67  NGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD 125

Query: 124 PDGSFWIS 131
            +G+ WI+
Sbjct: 126 YEGNLWIT 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.77
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.71
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.7
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.69
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.69
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.62
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.28
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.05
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.98
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.97
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.7
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.66
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.57
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.51
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.49
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.39
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.33
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.27
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.2
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.17
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.16
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.15
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.11
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.04
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.99
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.85
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.8
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.76
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.73
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.65
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.6
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.59
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.57
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.5
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.47
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.4
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.31
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.25
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.23
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.17
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.07
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.06
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.8
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.06
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.97
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.91
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.5
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.34
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.12
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.06
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.84
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.8
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	94.62
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.54
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.8
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	93.73
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.78
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.26
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.02
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	91.67
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.6
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	87.27
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	86.04
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.9
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.13

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.93  E-value=2.8e-25  Score=183.59  Aligned_cols=177  Identities=16%  Similarity=0.196  Sum_probs=137.5

Q ss_pred             eeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCC---
Q 046107            5 HLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGD---   81 (224)
Q Consensus         5 ~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~---   81 (224)
                      .++.+++.|||++++++|+|||||++.....  +........+.|.||+++++ ++...+..++..||||+++++++   
T Consensus       111 ~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~--~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~  187 (314)
T d1pjxa_         111 SEGRRMQGCNDCAFDYEGNLWITAPAGEVAP--ADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRP  187 (314)
T ss_dssp             TTSCBCBCCCEEEECTTSCEEEEECBCBCTT--SCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCE
T ss_pred             ccccccCCCcEEEECCCCCEEEecCccCccc--ccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcce
Confidence            4567789999999999999999997632211  11112223568899999998 67777788899999999999875   


Q ss_pred             -EEEEEeCCCCeEEEEEccC-CCcccceEeecc---CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhc
Q 046107           82 -FVVVCESWKFRCIKHWLKL-GDKRDREIFIEN---LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEH  156 (224)
Q Consensus        82 -~Lyv~~~~~~~I~~~~~~~-~~~~~~~~~~~~---~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~  156 (224)
                       +|||+++..++|++|+++. +.+...+++...   ..+.||||++|++|+||++.+..                     
T Consensus       188 ~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~---------------------  246 (314)
T d1pjxa_         188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS---------------------  246 (314)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT---------------------
T ss_pred             eEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCC---------------------
Confidence             7999999999999999863 344455555532   23479999999999999999887                     


Q ss_pred             hhhHHhhhhcCCCceEEEEEECCCC-cEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeCC
Q 046107          157 PELINQLMSTGKGAAAKVVKVSANG-SIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPLK  224 (224)
Q Consensus       157 ~~~~~~~~~~~~~~~~~v~~~~~~G-~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~~  224 (224)
                                     ++|.++||+| +++..+..|..    .++.+++.  +++|||++..+++|.+++++
T Consensus       247 ---------------g~I~~~dp~~g~~~~~i~~p~~----~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         247 ---------------SHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ---------------TEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ---------------CEEEEEeCCCCEEEEEEECCCC----CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence                           7899999985 56667776642    46666654  34799999999999999875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.93  E-value=1.7e-24  Score=180.66  Aligned_cols=194  Identities=19%  Similarity=0.302  Sum_probs=147.3

Q ss_pred             CceeeeccccccccceEEecCCcEEEEeCCCCCCcchhh--hhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEec
Q 046107            1 MIKIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYY--LDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSK   78 (224)
Q Consensus         1 ~~~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~--~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~   78 (224)
                      +++++.+..+.+||||++.++|.+|+|+++. + ...+.  .+.+...+.|.|++++++  +.+.+.+++.+||||+++|
T Consensus       140 ~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~-~-~~~~~~~~e~~~~~~~g~v~~~~~~--~~~~~~~~l~~pNGI~~s~  215 (340)
T d1v04a_         140 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-F-IDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISP  215 (340)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTEEEEEESCS-C-CSHHHHHHHHHTTCCCEEEEEECSS--CEEEEEEEESSEEEEEECT
T ss_pred             EEeecCCccccCccceEEecCCCEEEecCcc-C-cChhhhhhhHhhcCCceeEEEEcCC--ceEEEcCCCCccceeEECC
Confidence            4678899999999999999999999998763 2 22222  234456788999999964  5677888999999999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           79 HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        79 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                      |+++|||+++..++|++|++++....+...+. ..++.|||+.+|+ +|.+|++.++..   ..+..          ..+
T Consensus       216 d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lwva~~p~~---~~~~~----------~~~  281 (340)
T d1v04a_         216 DGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG---MRIFF----------YDA  281 (340)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH---HHHHS----------CCT
T ss_pred             CCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEEEEECCcc---cchhh----------hcc
Confidence            99999999999999999999753222222223 3678999999996 689999998762   11111          111


Q ss_pred             hhHHhhhhcCCCceEEEEEEC----CCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          158 ELINQLMSTGKGAAAKVVKVS----ANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~----~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                               .......++|+.    .++++..++.+ +|..++.+|.++.++|+||+++..++.| .|+|
T Consensus       282 ---------~~~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         282 ---------ENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             ---------TSCCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             ---------cCCCCceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCEEEEEeeeCCce-EecC
Confidence                     111115677773    45888888887 4777999999999999999999999877 7986

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.89  E-value=6.4e-22  Score=161.87  Aligned_cols=156  Identities=18%  Similarity=0.234  Sum_probs=126.3

Q ss_pred             eccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEE
Q 046107            6 LCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         6 ~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv   85 (224)
                      .+.+.+.+||+.++++|+||++++...           ...+.+.+++++.  ++++.+..++..|||+++++|++.+|+
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEE
Confidence            345677899999999999999986421           1235678999874  678888888999999999999999999


Q ss_pred             EeCCCCeEEEEEccCC---CcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           86 CESWKFRCIKHWLKLG---DKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~---~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                      +++..++|++|+.+..   ..+....+.+.  ..+.|+|+++|++|+||+|.+..                         
T Consensus       165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-------------------------  219 (295)
T d2ghsa1         165 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-------------------------  219 (295)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-------------------------
T ss_pred             eecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-------------------------
Confidence            9999999999998632   22334455432  35689999999999999999988                         


Q ss_pred             HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEEC---CEEEEEeCC
Q 046107          161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQ---GNLYLASIN  214 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~---g~lyv~~~~  214 (224)
                                 ++|.++||+|+++..+..|..    .+|++++.+   ++||||+..
T Consensus       220 -----------g~V~~~dp~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         220 -----------GAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             -----------TEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBC
T ss_pred             -----------CceEEecCCCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECC
Confidence                       789999999999999998853    478877753   789999875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=2.6e-21  Score=159.68  Aligned_cols=169  Identities=18%  Similarity=0.212  Sum_probs=127.0

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE   87 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~   87 (224)
                      .....|||++++++|++||+++...           .....|.+++++++++.++.+.+++..||||++++|++.|||++
T Consensus       127 ~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         127 STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             CcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence            4477899999999999999996521           12357889999998667787888899999999999999999999


Q ss_pred             CCCCeEEEEEccCC-Cccc-c--eEeec-cCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           88 SWKFRCIKHWLKLG-DKRD-R--EIFIE-NLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        88 ~~~~~I~~~~~~~~-~~~~-~--~~~~~-~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      +..++|++|+++.. .... .  ..... .....||||++|++|+||+++...                           
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~---------------------------  248 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ---------------------------  248 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT---------------------------
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC---------------------------
Confidence            99999999998632 1111 1  11111 123469999999999999999987                           


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCC--cccceeEEEEE--CCEEEEEeC-----CCCeEEEeeC
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAK--NISFVTSALEF--QGNLYLASI-----NSNFIGKLPL  223 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~--~~~~~t~~~~~--~g~lyv~~~-----~~~~i~~~~~  223 (224)
                               ++|.++||+|+++..+..|...  ....+++++..  ...+|+++.     .+..|.+++.
T Consensus       249 ---------g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         249 ---------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             ---------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             ---------CEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence                     7999999999999999887532  12345565553  356887763     3456666654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=3.9e-18  Score=136.28  Aligned_cols=156  Identities=16%  Similarity=0.246  Sum_probs=121.5

Q ss_pred             cccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEE
Q 046107            8 HLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus         8 ~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ..+..|++|+++++|++|+++..                 ...+++++..+...... ..++..|++|+++++|+ +|++
T Consensus        95 ~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~  156 (260)
T d1rwia_          95 DGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVT  156 (260)
T ss_dssp             CSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEE
T ss_pred             eeeeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC-Eeee
Confidence            34788999999999999999843                 45688888764433332 45688999999999997 9999


Q ss_pred             eCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhc
Q 046107           87 ESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMST  166 (224)
Q Consensus        87 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  166 (224)
                      +...++|.+++.++..   ...+.......|.++++|++|+||+++...                               
T Consensus       157 ~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~-------------------------------  202 (260)
T d1rwia_         157 DTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNT-------------------------------  202 (260)
T ss_dssp             EGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTT-------------------------------
T ss_pred             ccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecCC-------------------------------
Confidence            9999999999987632   222221223579999999999999999887                               


Q ss_pred             CCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          167 GKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       167 ~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                           ++|+++++++.....+...   .+..++.++.+ +|+||+++..+++|.+|+.
T Consensus       203 -----~~i~~~~~~~~~~~~~~~~---~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         203 -----NQVVKLLAGSTTSTVLPFT---GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             -----TEEEEECTTCSCCEECCCC---SCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             -----CEEEEEeCCCCeEEEEccC---CCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence                 6899999998876665322   24567777766 6899999999999999974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.4e-16  Score=128.29  Aligned_cols=161  Identities=11%  Similarity=0.126  Sum_probs=122.6

Q ss_pred             eeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCC
Q 046107            4 IHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGD   81 (224)
Q Consensus         4 ~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~   81 (224)
                      .+....+..|++++++++|++|+++..                 .+.++++++++..+..+.  .....|++|+++++|+
T Consensus       107 ~~~~~~~~~p~~~avd~~G~i~v~~~~-----------------~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~  169 (279)
T d1q7fa_         107 KFGATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE  169 (279)
T ss_dssp             EECTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             ecCCCcccccceeccccCCcEEEEeec-----------------cceeeEeccCCceeecccccccccccceeeecccee
Confidence            445566889999999999999999854                 467888998744444432  3567889999999985


Q ss_pred             EEEEEeCCCCeEEEEEccCCCcccceEeec-cCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhH
Q 046107           82 FVVVCESWKFRCIKHWLKLGDKRDREIFIE-NLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELI  160 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (224)
                       ||+++...++|++|+.+|..+   ..+.. .....|.+|++|++|++||++...+                        
T Consensus       170 -i~v~d~~~~~V~~~d~~G~~~---~~~g~~g~~~~P~giavD~~G~i~Vad~~~~------------------------  221 (279)
T d1q7fa_         170 -IFISDNRAHCVKVFNYEGQYL---RQIGGEGITNYPIGVGINSNGEILIADNHNN------------------------  221 (279)
T ss_dssp             -EEEEEGGGTEEEEEETTCCEE---EEESCTTTSCSEEEEEECTTCCEEEEECSSS------------------------
T ss_pred             -EEeeeccccceeeeecCCcee---eeecccccccCCcccccccCCeEEEEECCCC------------------------
Confidence             999999999999999987422   22221 1234799999999999999997652                        


Q ss_pred             HhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE-ECCEEEEEeCCCCeEEEeeC
Q 046107          161 NQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE-FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       161 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~-~~g~lyv~~~~~~~i~~~~~  223 (224)
                                 .+|.+++++|+++..+..+..  ...++.++. .+|+|||++ .+++|.+|+.
T Consensus       222 -----------~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~-~n~~v~~fr~  271 (279)
T d1q7fa_         222 -----------FNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLAS-KDYRLYIYRY  271 (279)
T ss_dssp             -----------CEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEE-TTTEEEEEEC
T ss_pred             -----------cEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEe-CCCeEEEEEe
Confidence                       578999999999888865432  234666554 478999999 5799998875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.72  E-value=2.9e-16  Score=129.06  Aligned_cols=157  Identities=14%  Similarity=0.178  Sum_probs=115.8

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCC-
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVS-IVLEGLYFANGVALSKHGDFVVVCESW-   89 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~-~~~~~~~~pngia~~~dg~~Lyv~~~~-   89 (224)
                      .++++++|++|+|||+|..                 .++|+++++++++.. ...+....|+||++++||+ |||++.. 
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~-----------------~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~  102 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVF-----------------EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGD  102 (319)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTT
T ss_pred             CcEeCEECCCCCEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCC
Confidence            3589999999999999843                 689999999866544 3456778899999999997 9999853 


Q ss_pred             ---CCeEEEEEccCCCcccceEeecc--CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhh
Q 046107           90 ---KFRCIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLM  164 (224)
Q Consensus        90 ---~~~I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  164 (224)
                         ...|..++..+..   .....+.  ....|+++++|++|++|+++....                            
T Consensus       103 ~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~----------------------------  151 (319)
T d2dg1a1         103 FKSTGGIFAATENGDN---LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY----------------------------  151 (319)
T ss_dssp             SSSCCEEEEECTTSCS---CEEEECSSSSCCCEEEEEECTTSCEEEEECCCB----------------------------
T ss_pred             CccceeEEEEcCCCce---eeeeccCCCcccCCcceeEEeccceeecccccc----------------------------
Confidence               4567877776532   2223322  124689999999999999987652                            


Q ss_pred             hcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          165 STGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       165 ~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                        .....+.+++++++|+.+..+...    +..+..++.+  ++.||+++..+++|.++++
T Consensus       152 --~~~~~g~v~~~~~dg~~~~~~~~~----~~~pnGia~s~dg~~lyvad~~~~~I~~~d~  206 (319)
T d2dg1a1         152 --STNPLGGVYYVSPDFRTVTPIIQN----ISVANGIALSTDEKVLWVTETTANRLHRIAL  206 (319)
T ss_dssp             --TTBCCEEEEEECTTSCCEEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             --cccCcceeEEEecccceeEEEeec----cceeeeeeeccccceEEEecccCCceEEEEE
Confidence              112228899999999766554331    2345566654  5679999999999999975

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.71  E-value=5.3e-16  Score=126.17  Aligned_cols=157  Identities=15%  Similarity=0.153  Sum_probs=120.2

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK   90 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~   90 (224)
                      .+++++|+++||+||+|+..                 .++|++++++ ++.+.+......|+|+++++||+ |||++...
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~-----------------~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHE-----------------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeCC-----------------CCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            36889999999999999853                 6799999998 67777777788999999999998 99999888


Q ss_pred             CeEEEEEccCCCcccceEeecc-CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           91 FRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        91 ~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      +.+++++..+.. +....+... ....|++++++++|++|+++...                                  
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~----------------------------------  133 (302)
T d2p4oa1          89 DSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYR----------------------------------  133 (302)
T ss_dssp             TSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTT----------------------------------
T ss_pred             ceEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeecccc----------------------------------
Confidence            999888876422 233333322 22468999999999999998876                                  


Q ss_pred             ceEEEEEECCCCcEEEEE-eCCCC------CcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSANGSIIREF-NDPNA------KNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~~G~~~~~~-~~~~g------~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                        +.++++++++.....+ .++..      .....+..+..+++.+|+++...++|.++++
T Consensus       134 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~  192 (302)
T d2p4oa1         134 --GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPV  192 (302)
T ss_dssp             --TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEB
T ss_pred             --ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccc
Confidence              6889999876554433 22111      1123344566789999999999999999875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=4.7e-16  Score=123.94  Aligned_cols=156  Identities=17%  Similarity=0.253  Sum_probs=115.8

Q ss_pred             ccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEE
Q 046107            7 CHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus         7 ~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv   85 (224)
                      ...+..|++|+++++|+||+++..                  +.+.++...+...... ...+..|++|+++++|+ ||+
T Consensus        53 ~~~~~~p~gvav~~~g~i~v~d~~------------------~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~-i~v  113 (260)
T d1rwia_          53 FNGLYQPQGLAVDGAGTVYVTDFN------------------NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYV  113 (260)
T ss_dssp             CCSCCSCCCEEECTTCCEEEEETT------------------TEEEEECTTCSCCEECCCCSCCSEEEEEECTTCC-EEE
T ss_pred             cCCccCceEEEEcCCCCEEEeeee------------------eceeeeeeeccceeeeeeeeeeecccccccccce-eEe
Confidence            344678999999999999999843                  3344444432222222 45678899999999997 999


Q ss_pred             EeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhh
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMS  165 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  165 (224)
                      ++...+++.+++..+..   ...+.......|.+++++++|++|+++...                              
T Consensus       114 ~d~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~------------------------------  160 (260)
T d1rwia_         114 ADRGNNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVDNSGNVYVTDTDN------------------------------  160 (260)
T ss_dssp             EEGGGTEEEEECTTCSS---CEECCCCSCCSCCEEEECTTCCEEEEEGGG------------------------------
T ss_pred             eccccccccccccccce---eeeeeecccCCcceeeecCCCCEeeecccc------------------------------
Confidence            99999999999886532   122211123479999999999999999877                              


Q ss_pred             cCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          166 TGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       166 ~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                            .+|.+++++|.....+....   +..+..++.+ +|+||+++..+++|.+++.
T Consensus       161 ------~~i~~~d~~~~~~~~~~~~~---~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         161 ------NRVVKLEAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             ------TEEEEECTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             ------ccccccccccceeeeeeccc---cCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence                  68999999988766654322   3456777654 6899999999999999863

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.69  E-value=1.3e-15  Score=123.92  Aligned_cols=151  Identities=19%  Similarity=0.165  Sum_probs=113.6

Q ss_pred             eccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-----------cCcccccee
Q 046107            6 LCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-----------EGLYFANGV   74 (224)
Q Consensus         6 ~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-----------~~~~~pngi   74 (224)
                      +......+|+++++++|++|++++.                 .+.+|++++.++..+...           .....+|||
T Consensus       108 ~~~~~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi  170 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  170 (302)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             ccCCccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence            3445778999999999999999854                 578889888766555432           234557888


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccCC-CcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHH
Q 046107           75 ALSKHGDFVVVCESWKFRCIKHWLKLG-DKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLL  153 (224)
Q Consensus        75 a~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~  153 (224)
                      +++  ++.||++++..++|++++.++. .......+..  ...|++|++|++|++|++....                  
T Consensus       171 ~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~pdgia~d~dG~l~va~~~~------------------  228 (302)
T d2p4oa1         171 KRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIY------------------  228 (302)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTT------------------
T ss_pred             ccc--CCceeeecCCCCeEEeccccccccccccccccC--CCCCcceEECCCCCEEEEEcCC------------------
Confidence            776  4579999999999999998743 2333344432  3579999999999999999877                  


Q ss_pred             hhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-----CCEEEEEeCCC
Q 046107          154 EEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-----QGNLYLASINS  215 (224)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-----~g~lyv~~~~~  215 (224)
                                        ++|.+++|+|+.........+  +..++.+++.     +++||+++..+
T Consensus       229 ------------------~~V~~i~p~G~~~~~~~~~~~--~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         229 ------------------NSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             ------------------CCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ------------------CcEEEECCCCCEEEEEecCCC--CCCceEEEEcCCCCCCCEEEEECCCC
Confidence                              689999999998777765443  4567877763     36799987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.69  E-value=1.8e-15  Score=124.05  Aligned_cols=175  Identities=14%  Similarity=0.204  Sum_probs=119.5

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-----CccccceeEEecCCCEE
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-----GLYFANGVALSKHGDFV   83 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-----~~~~pngia~~~dg~~L   83 (224)
                      .+..+++++++++|++||++.....          ...+.|+|+++|+++++.+.+..     ....|+||++++||+.|
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~----------~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l   85 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEV----------NGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL   85 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEE----------TTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECcccc----------ccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEE
Confidence            3778999999999999999865211          11246889999998777665532     23459999999999989


Q ss_pred             EEEeCCCCeEEEEEccCCCcccceEeeccC----CCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhh
Q 046107           84 VVCESWKFRCIKHWLKLGDKRDREIFIENL----PGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPEL  159 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (224)
                      ||++.. +.|.++++++..   ..+.....    ...|+++++|++|++|+++........+..                
T Consensus        86 ~vad~~-~~i~~~~~~g~~---~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~----------------  145 (314)
T d1pjxa_          86 FVADMR-LGLLVVQTDGTF---EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT----------------  145 (314)
T ss_dssp             EEEETT-TEEEEEETTSCE---EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC----------------
T ss_pred             EEEECC-CeEEEEeCCCcE---EEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccc----------------
Confidence            999864 679999997632   11221111    125899999999999999876531100000                


Q ss_pred             HHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE--ECC----EEEEEeCCCCeEEEeeC
Q 046107          160 INQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE--FQG----NLYLASINSNFIGKLPL  223 (224)
Q Consensus       160 ~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~--~~g----~lyv~~~~~~~i~~~~~  223 (224)
                           .....+.++|++++++|+.......     +..+..++.  +++    .||+++..+++|.++++
T Consensus       146 -----~~~~~~~G~v~~~~~dg~~~~~~~~-----~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~  205 (314)
T d1pjxa_         146 -----RSMQEKFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI  205 (314)
T ss_dssp             -----BTTSSSCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred             -----ceeccCCceEEEEeecCceeEeeCC-----cceeeeeEECCCCCcceeEEEEEeecccceEEeec
Confidence                 0011223899999999988665432     223444443  322    69999999999999875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.1e-14  Score=112.28  Aligned_cols=160  Identities=14%  Similarity=0.081  Sum_probs=121.1

Q ss_pred             ccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEE-EecCccccceeEEecCCCEEE
Q 046107            7 CHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSI-VLEGLYFANGVALSKHGDFVV   84 (224)
Q Consensus         7 ~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~-~~~~~~~pngia~~~dg~~Ly   84 (224)
                      ...+..|.++|+|. .++||++|..                 .++|.+++.++..... +......|.+|+++|..++||
T Consensus        73 ~~~~~~p~glAvD~~~~~lY~~d~~-----------------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly  135 (266)
T d1ijqa1          73 SRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY  135 (266)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             eCCCCCcceEEEeeccceEEEEecC-----------------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEE
Confidence            34467899999996 6789999853                 4678888887554444 456688999999999777899


Q ss_pred             EEeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           85 VCESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        85 v~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      +++.. ..+|++.+++|.   ..+.+....-..|.+|++|+. ++||.++...                           
T Consensus       136 ~~~~~~~~~I~r~~~dGs---~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~---------------------------  185 (266)
T d1ijqa1         136 WTDWGTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL---------------------------  185 (266)
T ss_dssp             EEECSSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTT---------------------------
T ss_pred             EeccCCCcceeEeccCCC---ceecccccccceeeEEEeeccccEEEEecCCc---------------------------
Confidence            99965 458999999873   334444332357999999986 4599998776                           


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                               +.|.+++.+|.-...+..... .++.+..++.++++||+++..++.|.+++.
T Consensus       186 ---------~~I~~~~~dG~~~~~~~~~~~-~~~~p~~lav~~~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         186 ---------HSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             ---------TEEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ---------CEEEEEECCCCCEEEEEeCCC-cccccEEEEEECCEEEEEECCCCeEEEEEC
Confidence                     689999999865444432222 245677788889999999999999999874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.7e-14  Score=110.92  Aligned_cols=160  Identities=10%  Similarity=0.088  Sum_probs=121.0

Q ss_pred             eeeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCC
Q 046107            4 IHLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGD   81 (224)
Q Consensus         4 ~~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~   81 (224)
                      ++-...+..|.++|+|. .++||+++..                 .++|.+++.++...+.+ ..++..|.+|+++|...
T Consensus        72 ~v~~~~~~~p~~iAvD~~~~~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g  134 (263)
T d1npea_          72 TIIRQDLGSPEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG  134 (263)
T ss_dssp             EEECTTCCCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT
T ss_pred             EEEEeccccccEEEEeccCCeEEEeccC-----------------CCEEEEEecCCceEEEEecccccCCcEEEEecccC
Confidence            33444567899999996 6789999843                 46788888875444444 45678999999999888


Q ss_pred             EEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           82 FVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        82 ~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                      +||+++...  .+|++.+++|.   ..+.+....-..|.+|++|+. ++||+++...                       
T Consensus       135 ~ly~t~~~~~~~~I~r~~~dG~---~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~-----------------------  188 (263)
T d1npea_         135 NLYWTDWNRDNPKIETSHMDGT---NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT-----------------------  188 (263)
T ss_dssp             EEEEEECCSSSCEEEEEETTSC---CCEEEECTTCSCEEEEEEETTTTEEEEEETTT-----------------------
T ss_pred             cEEEeecCCCCcEEEEecCCCC---CceeeeeecccccceEEEeecCcEEEEEeCCC-----------------------
Confidence            999999654  46999999873   233443222357999999976 5699998766                       


Q ss_pred             hHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          159 LINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                                   +.|.+++.+|.-.+.+..  +  ++.+..++.++++||++++.+++|.+++.
T Consensus       189 -------------~~I~~~~~~g~~~~~v~~--~--~~~P~~lav~~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         189 -------------HRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             -------------TEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             -------------CEEEEEECCCCCeEEEEC--C--CCCcEEEEEECCEEEEEECCCCEEEEEEC
Confidence                         689999999977665532  2  23466777889999999999999999985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=2e-13  Score=109.44  Aligned_cols=157  Identities=11%  Similarity=0.168  Sum_probs=115.7

Q ss_pred             ccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec------CccccceeEEecCCC-
Q 046107            9 LIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE------GLYFANGVALSKHGD-   81 (224)
Q Consensus         9 ~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~------~~~~pngia~~~dg~-   81 (224)
                      .++.|.+|+++++|+|||+|..                 ..+|.++|+++..+..+..      ....|.++++..+.. 
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~-----------------n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~   83 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTN-----------------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD   83 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTE
T ss_pred             eECCccEEEEcCCCCEEEEECC-----------------CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccc
Confidence            4889999999999999999843                 4678999988433333321      234688999877654 


Q ss_pred             EEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHH
Q 046107           82 FVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELIN  161 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  161 (224)
                      .+++.+...++|.+++.++..   ...+.......|.++++|++|++|+++...                          
T Consensus        84 ~~~~~~~~~~~i~~~~~~g~~---~~~~~~~~~~~p~~~avd~~G~i~v~~~~~--------------------------  134 (279)
T d1q7fa_          84 IIVTERSPTHQIQIYNQYGQF---VRKFGATILQHPRGVTVDNKGRIIVVECKV--------------------------  134 (279)
T ss_dssp             EEEEECGGGCEEEEECTTSCE---EEEECTTTCSCEEEEEECTTSCEEEEETTT--------------------------
T ss_pred             cceeccCCccccccccccccc---eeecCCCcccccceeccccCCcEEEEeecc--------------------------
Confidence            445555677789988887632   222221223578999999999999998876                          


Q ss_pred             hhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEeeC
Q 046107          162 QLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       162 ~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~~~  223 (224)
                                ..+.+++++|+.+..+....+  +..+..++.+ ++++|+++...++|.+++.
T Consensus       135 ----------~~~~~~~~~g~~~~~~g~~~~--~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~  185 (279)
T d1q7fa_         135 ----------MRVIIFDQNGNVLHKFGCSKH--LEFPNGVVVNDKQEIFISDNRAHCVKVFNY  185 (279)
T ss_dssp             ----------TEEEEECTTSCEEEEEECTTT--CSSEEEEEECSSSEEEEEEGGGTEEEEEET
T ss_pred             ----------ceeeEeccCCceeeccccccc--ccccceeeeccceeEEeeeccccceeeeec
Confidence                      578999999999888865433  4556666544 6899999999999998874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.7e-12  Score=101.54  Aligned_cols=156  Identities=14%  Similarity=0.113  Sum_probs=117.7

Q ss_pred             ccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeC
Q 046107           11 RFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL-EGLYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        11 ~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~-~~~~~pngia~~~dg~~Lyv~~~   88 (224)
                      +.+-+|++|. ++.||++|..                 .+.|++.+.+++..+.+. .+...|.|||++.-++.||+++.
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~-----------------~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~   98 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDIS-----------------EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS   98 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETT-----------------TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEEEeCCCEEEEEECC-----------------CCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc
Confidence            3345688885 5689999854                 568999888755555544 56789999999987778999999


Q ss_pred             CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcC
Q 046107           89 WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTG  167 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  167 (224)
                      ..++|.+++++|.   ..++++......|.++++|+. |.+|.++.+...                              
T Consensus        99 ~~~~I~~~~~dg~---~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~------------------------------  145 (263)
T d1npea_          99 QLDRIEVAKMDGT---QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN------------------------------  145 (263)
T ss_dssp             TTTEEEEEETTSC---SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS------------------------------
T ss_pred             CCCEEEEEecCCc---eEEEEecccccCCcEEEEecccCcEEEeecCCCC------------------------------
Confidence            9999999999873   233444333357999999985 678888876521                              


Q ss_pred             CCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          168 KGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       168 ~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                          .+|.|.+.+|+-...+... +  +..++.++.+  +++||+++...+.|.++++
T Consensus       146 ----~~I~r~~~dG~~~~~i~~~-~--~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  196 (263)
T d1npea_         146 ----PKIETSHMDGTNRRILAQD-N--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (263)
T ss_dssp             ----CEEEEEETTSCCCEEEECT-T--CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ----cEEEEecCCCCCceeeeee-c--ccccceEEEeecCcEEEEEeCCCCEEEEEEC
Confidence                4799999999876665443 2  3467777765  7899999999999999876

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.2e-12  Score=99.63  Aligned_cols=156  Identities=15%  Similarity=0.108  Sum_probs=115.9

Q ss_pred             cccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCC-----eEEEEecCccccceeEEecCCCEE
Q 046107           10 IRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSK-----QVSIVLEGLYFANGVALSKHGDFV   83 (224)
Q Consensus        10 ~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g-----~~~~~~~~~~~pngia~~~dg~~L   83 (224)
                      +..+.+|+++. ++.||++|..                 .+.|++.+.++.     ....+..+...|.|||++.-++.|
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~-----------------~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~l   91 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI   91 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEE
T ss_pred             CCceEEEEEEeCCCEEEEEECC-----------------CCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceE
Confidence            55667788886 5689999954                 457877765421     122345678889999999888889


Q ss_pred             EEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECC-CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHh
Q 046107           84 VVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAP-DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQ  162 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  162 (224)
                      |+++...++|.+++++|..   ...+.......|.++++|+ +|.+|.++.+..                          
T Consensus        92 Y~~d~~~~~I~v~~~~g~~---~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~--------------------------  142 (266)
T d1ijqa1          92 YWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP--------------------------  142 (266)
T ss_dssp             EEEETTTTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSSS--------------------------
T ss_pred             EEEecCCCEEEeEecCCce---EEEEEcCCCCCcceEEEEcccCeEEEeccCCC--------------------------
Confidence            9999999999999998732   2333322235799999998 588999986652                          


Q ss_pred             hhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          163 LMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       163 ~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                               ++|.|.+.+|.-...+....   +..++.++.+  +++||+++...++|.++++
T Consensus       143 ---------~~I~r~~~dGs~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~  193 (266)
T d1ijqa1         143 ---------AKIKKGGLNGVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (266)
T ss_dssp             ---------CEEEEEETTSCCEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ---------cceeEeccCCCceecccccc---cceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence                     58999999998777665432   3456777655  7899999999999999876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.28  E-value=2.4e-10  Score=92.12  Aligned_cols=161  Identities=14%  Similarity=0.185  Sum_probs=112.8

Q ss_pred             eeeeccccccccceEEec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCC
Q 046107            3 KIHLCHLIRFANDVIEAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGD   81 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~   81 (224)
                      +.+...++..-++...++ +|+||++|..                 .++|+++|+++++.+.. .-...+.++++.+||+
T Consensus        10 ~~~~~~~~~LgEgp~wd~~~~~l~wvDi~-----------------~~~I~r~d~~~g~~~~~-~~~~~~~~i~~~~dg~   71 (295)
T d2ghsa1          10 RVLDETPMLLGEGPTFDPASGTAWWFNIL-----------------ERELHELHLASGRKTVH-ALPFMGSALAKISDSK   71 (295)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGG-----------------GTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTE
T ss_pred             EEEcCCCCeeeeCCeEECCCCEEEEEECC-----------------CCEEEEEECCCCeEEEE-ECCCCcEEEEEecCCC
Confidence            455566666667888885 7899999943                 57899999997776644 3345678999999986


Q ss_pred             EEEEEeCCCCeEEEEEccCCCcccceEeeccC---C-CCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhch
Q 046107           82 FVVVCESWKFRCIKHWLKLGDKRDREIFIENL---P-GGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHP  157 (224)
Q Consensus        82 ~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~---~-~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~  157 (224)
                       |+++..  +.|++++++++   +.+.+.+..   + ..|+++++|++|++|+++.....                    
T Consensus        72 -l~va~~--~gl~~~d~~tg---~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~--------------------  125 (295)
T d2ghsa1          72 -QLIASD--DGLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--------------------  125 (295)
T ss_dssp             -EEEEET--TEEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--------------------
T ss_pred             -EEEEEe--CccEEeecccc---eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc--------------------
Confidence             888853  58999998753   334444321   1 25789999999999999876521                    


Q ss_pred             hhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE--ECCEEEEEeCCCCeEEEeeC
Q 046107          158 ELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE--FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~--~~g~lyv~~~~~~~i~~~~~  223 (224)
                                ....+.+++++ +|+.......     +..+..++.  ++..+|+++..++.|.++++
T Consensus       126 ----------~~~~g~l~~~~-~g~~~~~~~~-----~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1         126 ----------ETGAGSIYHVA-KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             ----------CTTCEEEEEEE-TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             ----------cccceeEeeec-CCcEEEEeec-----cCCcceeeecCCCceEEEeecccceeeEeee
Confidence                      11116788886 5776555532     223344443  46789999999999999875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.05  E-value=2.2e-08  Score=82.65  Aligned_cols=163  Identities=12%  Similarity=0.035  Sum_probs=103.9

Q ss_pred             ccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEe--CCCCeEEEE-----ecCccccceeEEecCCCE
Q 046107           11 RFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYD--PSSKQVSIV-----LEGLYFANGVALSKHGDF   82 (224)
Q Consensus        11 ~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~--~~~g~~~~~-----~~~~~~pngia~~~dg~~   82 (224)
                      ..|++++++|||+ +|+++..                 ...|++++  .. ++....     ......|.+++++|||++
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~-g~~~~~~~~~~~~~g~gPr~i~f~pdg~~  206 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNY  206 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             CcceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCC-CceeeccceeecCCCCceEEEEECCCCce
Confidence            3578999999996 8888743                 34555554  33 443322     123568999999999999


Q ss_pred             EEEEeCCCCeEEEEEccCCCcccceEeec---cC-------------CCCCCceEECCCCC-EEEEEecCCchhhhhhcc
Q 046107           83 VVVCESWKFRCIKHWLKLGDKRDREIFIE---NL-------------PGGPDNINLAPDGS-FWISLIKMNSSAVETVHS  145 (224)
Q Consensus        83 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~---~~-------------~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~  145 (224)
                      +||+...++.|..|+.++...........   ..             ...+..+++++||+ +|++.....+.       
T Consensus       207 ~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~-------  279 (365)
T d1jofa_         207 LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE-------  279 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT-------
T ss_pred             EEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc-------
Confidence            99999999999999987532111111000   00             01356899999997 78887655321       


Q ss_pred             ChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEE---eCC-CCCcccceeEEE--E-ECCEEEEEeCCCCeE
Q 046107          146 SKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREF---NDP-NAKNISFVTSAL--E-FQGNLYLASINSNFI  218 (224)
Q Consensus       146 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~---~~~-~g~~~~~~t~~~--~-~~g~lyv~~~~~~~i  218 (224)
                                            ....-.+++++++|.+.+..   ..+ .|.   .+-.+.  + ++..||+++..++.|
T Consensus       280 ----------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~---~p~~i~~~p~~G~~l~va~~~s~~v  334 (365)
T d1jofa_         280 ----------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---HSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             ----------------------SCCEEEEEEECTTSCEEEEEEEEECSSCCT---TCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             ----------------------cceEEEEEEecCCCceeeEeEeeEEEcCCC---CccEEEecCCCCCEEEEEeCCCCeE
Confidence                                  11114568888888765432   222 232   222233  2 456799999999999


Q ss_pred             EEeeC
Q 046107          219 GKLPL  223 (224)
Q Consensus       219 ~~~~~  223 (224)
                      .++++
T Consensus       335 ~v~~~  339 (365)
T d1jofa_         335 EIYRW  339 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=7.3e-09  Score=82.39  Aligned_cols=84  Identities=13%  Similarity=0.201  Sum_probs=57.1

Q ss_pred             eEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec-cCCCCCCceEECCCC
Q 046107           50 QLLRYDPSSKQVSIV--LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE-NLPGGPDNINLAPDG  126 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~--~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG  126 (224)
                      +||.++.. +.++.+  .+....+.+|+++|||++||++....+.|..|+++.... ..+.... .....|.++++++||
T Consensus        17 ~v~~~~~~-~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~-~~~~~~~~~~~~~p~~l~~spDg   94 (333)
T d1ri6a_          17 HVWNLNHE-GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAESALPGSLTHISTDHQG   94 (333)
T ss_dssp             EEEEECTT-SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEECSSCCSEEEECTTS
T ss_pred             EEEEEcCC-CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEeeecccCCCceEEEEcCCC
Confidence            45555544 444433  345577899999999999999999899999998864211 1122111 234579999999999


Q ss_pred             C-EEEEEecC
Q 046107          127 S-FWISLIKM  135 (224)
Q Consensus       127 ~-l~va~~~~  135 (224)
                      + +|++....
T Consensus        95 ~~l~v~~~~~  104 (333)
T d1ri6a_          95 QFVFVGSYNA  104 (333)
T ss_dssp             SEEEEEETTT
T ss_pred             CEEeecccCC
Confidence            8 66665444

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.97  E-value=2.1e-08  Score=78.37  Aligned_cols=84  Identities=14%  Similarity=0.076  Sum_probs=63.7

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      ..+.|..+|.+++++.........|.+|+++|||++|||+....++|..|++....  ....+  .....|.+++++++|
T Consensus        10 ~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~--~~~~~~~~~~~~~~~   85 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATV--PAGSSPQGVAVSPDG   85 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEE--ECSSSEEEEEECTTS
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeee--ecccccccccccccc
Confidence            36789999998888776666667899999999999999999999999999986421  11222  123468999999999


Q ss_pred             CEEEEEec
Q 046107          127 SFWISLIK  134 (224)
Q Consensus       127 ~l~va~~~  134 (224)
                      ..++....
T Consensus        86 ~~~~~~~~   93 (301)
T d1l0qa2          86 KQVYVTNM   93 (301)
T ss_dssp             SEEEEEET
T ss_pred             cccccccc
Confidence            85544433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.90  E-value=2.8e-08  Score=84.48  Aligned_cols=180  Identities=14%  Similarity=0.206  Sum_probs=104.6

Q ss_pred             cccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC---------ccccceeEEecC-
Q 046107           10 IRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG---------LYFANGVALSKH-   79 (224)
Q Consensus        10 ~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~---------~~~pngia~~~d-   79 (224)
                      |..|.+|++.+||+||||+.                 ..|+|+++++++++.+.+.+-         ..+.-|||++|| 
T Consensus        26 L~~P~~la~~pdg~llVter-----------------~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTER-----------------ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEET-----------------TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCceEEEEeCCCeEEEEEe-----------------cCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            88999999999999999972                 368999999877776655421         223347999984 


Q ss_pred             --CCEEEEEeCC------------CCeEEEEEccCC--CcccceEeeccCC----CCCCceEECCCCCEEEEEecCCchh
Q 046107           80 --GDFVVVCESW------------KFRCIKHWLKLG--DKRDREIFIENLP----GGPDNINLAPDGSFWISLIKMNSSA  139 (224)
Q Consensus        80 --g~~Lyv~~~~------------~~~I~~~~~~~~--~~~~~~~~~~~~~----~~p~~i~~d~dG~l~va~~~~~~~~  139 (224)
                        ..+||++.+.            ...|.++..+..  .....+++....+    ..-..|++++||.||++.+...+..
T Consensus        89 ~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~  168 (450)
T d1crua_          89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQ  168 (450)
T ss_dssp             TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTS
T ss_pred             ccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCccc
Confidence              4589997541            123566665532  1222333333322    1346899999999999998764321


Q ss_pred             hhhhccChhHHHHHhhchhhHHhhhh-cCCCceEEEEEECCCCcEE-----------EEEeCCCCCcccceeEEEEE-CC
Q 046107          140 VETVHSSKNRKQLLEEHPELINQLMS-TGKGAAAKVVKVSANGSII-----------REFNDPNAKNISFVTSALEF-QG  206 (224)
Q Consensus       140 ~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~G~~~-----------~~~~~~~g~~~~~~t~~~~~-~g  206 (224)
                      ...... +.....   .+ ......+ ......++|+|++++|+.-           +.+..  |  +.++-.++.+ .|
T Consensus       169 ~~~~~~-~~~~~~---~~-~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~--G--~RNp~g~~~~p~g  239 (450)
T d1crua_         169 LAYLFL-PNQAQH---TP-TQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--G--HRNPQGLAFTPNG  239 (450)
T ss_dssp             GGGTTS-CCCTTC---CC-CHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--C--CSEEEEEEECTTS
T ss_pred             cccccc-cccccc---Cc-ccccccccccccccCceEEeeccccccccccccccccceEEEe--c--cccccceeecccc
Confidence            111100 000000   00 0000000 0112238999999998642           23332  3  2455556655 78


Q ss_pred             EEEEEeCCC
Q 046107          207 NLYLASINS  215 (224)
Q Consensus       207 ~lyv~~~~~  215 (224)
                      +||.++.+.
T Consensus       240 ~l~~~e~G~  248 (450)
T d1crua_         240 KLLQSEQGP  248 (450)
T ss_dssp             CEEEEEECS
T ss_pred             eeeeccccc
Confidence            999998653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=7.8e-07  Score=70.19  Aligned_cols=107  Identities=17%  Similarity=0.180  Sum_probs=72.7

Q ss_pred             ccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCc--eEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEE
Q 046107           11 RFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHG--QLLRYDPSSKQVSIV--LEGLYFANGVALSKHGDFVVV   85 (224)
Q Consensus        11 ~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g--~l~~~~~~~g~~~~~--~~~~~~pngia~~~dg~~Lyv   85 (224)
                      ..+.+|++.|||+ ||++...                 .+  .+|.++..+...+..  ......|.+|+++|||++||+
T Consensus        37 ~~v~~la~spDG~~L~v~~~~-----------------d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v   99 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRP-----------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFV   99 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETT-----------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEE
T ss_pred             CCEeEEEEeCCCCEEEEEECC-----------------CCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEee
Confidence            4578999999995 7788632                 34  356666654444443  345567999999999999999


Q ss_pred             EeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107           86 CESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        86 ~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      ++...+.|..+............ .......|.+++++++|+ +++++...
T Consensus       100 ~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~v~~s~d~~~~~~~~~~~  149 (333)
T d1ri6a_         100 GSYNAGNVSVTRLEDGLPVGVVD-VVEGLDGCHSANISPDNRTLWVPALKQ  149 (333)
T ss_dssp             EETTTTEEEEEEEETTEEEEEEE-EECCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred             cccCCCceeeeccccccceeccc-ccCCCccceEEEeeecceeeecccccc
Confidence            99988999888876432111111 112345788999999998 45544443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.79  E-value=9.7e-07  Score=68.48  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             ccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ..|.++++.+||+ ||++...                 .+.|..+|..+++..........|.++++++|++.++++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~-----------------~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAH-----------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMA   94 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCceeeeeeccccccccccccccccccccccc
Confidence            3578999999996 7888632                 578999998877765555667789999999999999999988


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEec
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIK  134 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~  134 (224)
                      ...+..++..+..   ....+ .....|..++++++|+.++....
T Consensus        95 ~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          95 SSTLSVIDTTSNT---VAGTV-KTGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             TTEEEEEETTTTE---EEEEE-ECSSSEEEEEECTTSSEEEEEET
T ss_pred             cceeeecccccce---eeeec-cccccceEEEeecCCCeeeeeec
Confidence            8899999886421   11112 23346788999999986654444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.76  E-value=3.4e-07  Score=73.97  Aligned_cols=108  Identities=11%  Similarity=-0.044  Sum_probs=71.9

Q ss_pred             cccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-
Q 046107           12 FANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW-   89 (224)
Q Consensus        12 ~~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~-   89 (224)
                      ..+++++.||| ++|+++...             ....+.||.+|.+++++........ +.+++++|||++||++... 
T Consensus        22 p~~~~a~spdg~~~~~~~~~~-------------~~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~SpDG~~l~va~~~~   87 (373)
T d2madh_          22 PTNDEAPGADGRRSYINLPAH-------------HSAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAHSGSEFALASTSF   87 (373)
T ss_pred             CccccccCCCCCEEEEEcccc-------------cCCCceEEEEECCCCCEEEEEeCCC-CccEEEcCCCCEEEEEeecC
Confidence            35688899998 689987541             2346789999988777654444333 3489999999999999754 


Q ss_pred             --------CCeEEEEEccCCCcccceEee-cc-----CCCCCCceEECCCCC-EEEEEecC
Q 046107           90 --------KFRCIKHWLKLGDKRDREIFI-EN-----LPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        90 --------~~~I~~~~~~~~~~~~~~~~~-~~-----~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                              .+.|..++..+.+.  ...+. ..     ....|.++++.++|+ +|+.....
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CcccccccceEEEEEECCCCcE--EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence                    35688888764321  11111 00     123678999999986 66666554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.70  E-value=1e-07  Score=75.58  Aligned_cols=102  Identities=10%  Similarity=-0.012  Sum_probs=73.9

Q ss_pred             ceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCe
Q 046107           15 DVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        15 ~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      ++++.++|+.+++...                 .+.|..+|.+++++....  .....|.+++++|||++|||+....+.
T Consensus         1 g~a~~~~~~~l~~~~~-----------------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNY-----------------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEET-----------------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcC-----------------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc
Confidence            4677888887777532                 578999999888765432  345679999999999999999999999


Q ss_pred             EEEEEccCCCcccceEee-cc----CCCCCCceEECCCCC-EEEEEecC
Q 046107           93 CIKHWLKLGDKRDREIFI-EN----LPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~-~~----~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      |..|++...+.  ...+. ..    ....|.++++++||+ +|++....
T Consensus        64 v~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~  110 (346)
T d1jmxb_          64 IYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT  110 (346)
T ss_dssp             EEEEETTTTEE--EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred             EEEEeCccCee--eeeecccccccccCCceEEEEEecCCCEEEEEecCC
Confidence            99999874321  11111 01    113689999999997 77776543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.66  E-value=7.2e-07  Score=74.82  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=60.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec-cCCCCCCceEE---
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE-NLPGGPDNINL---  122 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~---  122 (224)
                      ..|.|..+|.+++++.........|++++++|||++||+++. .+.|..++++...   .+...+ .....|.++++   
T Consensus        40 d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~---~~~~~~i~~~~~~~~~~~s~~  115 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKE---PTTVAEIKIGSEARSIETSKM  115 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSS---CCEEEEEECCSEEEEEEECCS
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCC---ceEEEEEecCCCCCCeEEecc
Confidence            578999999998887766555578999999999999999864 5789999986422   111111 11234666665   


Q ss_pred             -CCCCC-EEEEEecC
Q 046107          123 -APDGS-FWISLIKM  135 (224)
Q Consensus       123 -d~dG~-l~va~~~~  135 (224)
                       .+||+ +|++....
T Consensus       116 ~SpDG~~l~vs~~~~  130 (432)
T d1qksa2         116 EGWEDKYAIAGAYWP  130 (432)
T ss_dssp             TTCTTTEEEEEEEET
T ss_pred             cCCCCCEEEEEcCCC
Confidence             46898 67777665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.66  E-value=7.7e-07  Score=74.63  Aligned_cols=154  Identities=11%  Similarity=0.029  Sum_probs=96.4

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE--ecCccccceeEE----ecCCCEEE
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV--LEGLYFANGVAL----SKHGDFVV   84 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~--~~~~~~pngia~----~~dg~~Ly   84 (224)
                      .|+++++.|||+ +|++.                  .+|.+..+|..+++.+..  ......|.++++    +|||++||
T Consensus        63 ~~~~v~fSpDG~~l~~~s------------------~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~  124 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIG------------------RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI  124 (432)
T ss_dssp             CEEEEEECTTSCEEEEEE------------------TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred             CeeEEEECCCCCEEEEEc------------------CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEE
Confidence            588999999996 66554                  257788888765543222  334456677765    46999999


Q ss_pred             EEeCCCCeEEEEEccCCCcccceEeecc----------CCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHh
Q 046107           85 VCESWKFRCIKHWLKLGDKRDREIFIEN----------LPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLE  154 (224)
Q Consensus        85 v~~~~~~~I~~~~~~~~~~~~~~~~~~~----------~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~  154 (224)
                      ++....+.|..++.++...  ...+...          ..+.+..++++++|..|+......                  
T Consensus       125 vs~~~~~~v~i~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~------------------  184 (432)
T d1qksa2         125 AGAYWPPQYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET------------------  184 (432)
T ss_dssp             EEEEETTEEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT------------------
T ss_pred             EEcCCCCeEEEEeCccccc--eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC------------------
Confidence            9999999999999865321  1111100          112334567788887655444331                  


Q ss_pred             hchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEE--ECCEEEEEeCCCCeEEEeeC
Q 046107          155 EHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALE--FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~--~~g~lyv~~~~~~~i~~~~~  223 (224)
                                       +.|..++. +++.......+.|.   .+..+..  ++..+|+++..++.|..+++
T Consensus       185 -----------------~~i~~~d~~~~~~~~~~~i~~g~---~~~~~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         185 -----------------GKILLVDYTDLNNLKTTEISAER---FLHDGGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             -----------------TEEEEEETTCSSEEEEEEEECCS---SEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             -----------------CeEEEEEccCCCcceEEEEcccC---ccccceECCCCCEEEEeccccceEEEeec
Confidence                             56777774 45554443334443   2334443  45679999999999988875

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.59  E-value=6.1e-07  Score=71.71  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=67.5

Q ss_pred             EecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-------
Q 046107           18 EASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW-------   89 (224)
Q Consensus        18 ~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~-------   89 (224)
                      ..||| ++|+++..             .......||.+|.+++++.........| +++++|||++|||++..       
T Consensus         9 ~spdg~~~~v~~~~-------------~~~~~~~v~v~D~~tg~~~~~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g   74 (355)
T d2bbkh_           9 PAPDARRVYVNDPA-------------HFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARG   74 (355)
T ss_dssp             CCCCTTEEEEEECG-------------GGCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEE
T ss_pred             eCCCCCEEEEEecc-------------cCCCcCeEEEEECCCCcEEEEEECCCCC-ceEEcCCCCEEEEEeCCCcccccc
Confidence            45788 68998753             1134678999999888765444333334 79999999999998742       


Q ss_pred             --CCeEEEEEccCCCcccceEeecc-----CCCCCCceEECCCCC-EEEEEecC
Q 046107           90 --KFRCIKHWLKLGDKRDREIFIEN-----LPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        90 --~~~I~~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                        .+.|..||..+.+... ++....     ....|.++++.++|+ ++++....
T Consensus        75 ~~d~~v~v~D~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          75 ERTDYVEVFDPVTLLPTA-DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             EEEEEEEEECTTTCCEEE-EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             CCCCEEEEEECCCCCEEE-EEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence              3578889886532111 111100     124689999999987 66766544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.57  E-value=8e-07  Score=72.24  Aligned_cols=106  Identities=8%  Similarity=-0.169  Sum_probs=68.6

Q ss_pred             ceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC----
Q 046107           15 DVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW----   89 (224)
Q Consensus        15 ~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~----   89 (224)
                      +++..++| +.|++...             .......||.+|.++++......... ..+++++|||++||+++..    
T Consensus        24 ~~a~~~~~~~~~v~~~~-------------~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~   89 (368)
T d1mdah_          24 DHGPGAISRRSHITLPA-------------YFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARS   89 (368)
T ss_dssp             CCCCCCCTTEEEEEECT-------------TTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTT
T ss_pred             ccccCCCCcceeEEeec-------------cCCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccc
Confidence            45556677 46666432             11346789999998887665544333 4489999999999998742    


Q ss_pred             -----CCeEEEEEccCCCcccceEeec-c----CCCCCCceEECCCCC-EEEEEecC
Q 046107           90 -----KFRCIKHWLKLGDKRDREIFIE-N----LPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        90 -----~~~I~~~~~~~~~~~~~~~~~~-~----~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                           .+.|..||+.+.+.. .++-.. .    ....|.++++.+||+ +|+++...
T Consensus        90 ~~g~~d~~v~v~D~~t~~~~-~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~  145 (368)
T d1mdah_          90 AKGKRTDYVEVFDPVTFLPI-ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             TSSSEEEEEEEECTTTCCEE-EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             cccccCCeEEEEECCCCcEe-eeecCCccceecccCCccceEECCCCCEEEEEeCCC
Confidence                 346899988653210 111110 0    123689999999997 88887665

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.51  E-value=3.1e-06  Score=69.33  Aligned_cols=158  Identities=9%  Similarity=-0.003  Sum_probs=97.4

Q ss_pred             cccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEe--
Q 046107           12 FANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV-LEGLYFANGVALSKHGDFVVVCE--   87 (224)
Q Consensus        12 ~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~-~~~~~~pngia~~~dg~~Lyv~~--   87 (224)
                      .+..|+++++|+ ||+++..                 .-..|.++.+++..... ......|..+++++|++.+||+.  
T Consensus        41 ~~s~la~s~d~~~ly~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~  103 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAMK-----------------KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAK  103 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-----------------EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECS
T ss_pred             CCCEEEEcCCCCEEEEEeCC-----------------cEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEec
Confidence            356799998884 7777522                 23467778764333222 23456799999999999778765  


Q ss_pred             CCCCeEEEEEccC-CCccc---------ceEee---c-cCCCCCCceEECCCCC-EEEEEecCCchhhhhhccChhHHHH
Q 046107           88 SWKFRCIKHWLKL-GDKRD---------REIFI---E-NLPGGPDNINLAPDGS-FWISLIKMNSSAVETVHSSKNRKQL  152 (224)
Q Consensus        88 ~~~~~I~~~~~~~-~~~~~---------~~~~~---~-~~~~~p~~i~~d~dG~-l~va~~~~~~~~~~~~~~~p~~~~~  152 (224)
                      ..++.|+.+.... +..+.         .....   + ....+|.+++++|||+ +|+++.+...               
T Consensus       104 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~---------------  168 (365)
T d1jofa_         104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK---------------  168 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE---------------
T ss_pred             CCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCE---------------
Confidence            4567777766431 11110         00000   0 0123678999999998 8888766510               


Q ss_pred             HhhchhhHHhhhhcCCCceEEEEEECCCCcEEEE--EeCC-CCCcccceeEEEEE--CCEEEEEeCCCCeEEEeeC
Q 046107          153 LEEHPELINQLMSTGKGAAAKVVKVSANGSIIRE--FNDP-NAKNISFVTSALEF--QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~--~~~~-~g~~~~~~t~~~~~--~g~lyv~~~~~~~i~~~~~  223 (224)
                                         -.+++++.+|+....  ...+ .|   ..+..++.+  +..+|+++-.++.|.++++
T Consensus       169 -------------------v~~~~~~~~g~~~~~~~~~~~~~g---~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         169 -------------------LWTHRKLASGEVELVGSVDAPDPG---DHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             -------------------EEEEEECTTSCEEEEEEEECSSTT---CCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             -------------------EEEEEccCCCceeeccceeecCCC---CceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence                               345666777876433  2222 23   245555544  5679999999999988874

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.49  E-value=2.4e-06  Score=69.68  Aligned_cols=183  Identities=14%  Similarity=0.099  Sum_probs=103.8

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCe--EEEE-ec-C-----ccccceeEEe--cC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQ--VSIV-LE-G-----LYFANGVALS--KH   79 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~--~~~~-~~-~-----~~~pngia~~--~d   79 (224)
                      ..|+||+++++|.+|++-.- .++.    .........|.++.+|.++.+  ...+ .. +     .-.|+||.+-  +|
T Consensus        35 ~G~EDi~~~~dg~~~issg~-~~~~----~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~d  109 (340)
T d1v04a_          35 NGSEDLEILPNGLAFISSGL-KYPG----IMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  109 (340)
T ss_dssp             SCCCEEEECTTSEEEEEECC-CC------------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTT
T ss_pred             CCcceEEECCCCcEEEEecC-ccCC----CCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCC
Confidence            47999999999988876421 1110    000112346999999975332  2222 11 1     1468999874  45


Q ss_pred             CC-EEEEEeC--CCCeEEEEEcc--CCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHh
Q 046107           80 GD-FVVVCES--WKFRCIKHWLK--LGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLE  154 (224)
Q Consensus        80 g~-~Lyv~~~--~~~~I~~~~~~--~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~  154 (224)
                      |+ +|||.+-  ...+|-.|+++  +..+.-.+.+.......|+++++..+|.+|+++.....        .+..+. +.
T Consensus       110 g~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~--------~~~~~~-~e  180 (340)
T d1v04a_         110 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFI--------DPYLKS-WE  180 (340)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCC--------SHHHHH-HH
T ss_pred             CcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCc--------Chhhhh-hh
Confidence            54 5788874  45566666654  22221112222123357999999999999999743211        011111 11


Q ss_pred             hchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE--ECCEEEEEeCCCCeEEEeeC
Q 046107          155 EHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE--FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~--~~g~lyv~~~~~~~i~~~~~  223 (224)
                             .+   ...+.+.|+.++++..  +....  +  +..+..++.  ++..|||++....+|.+|++
T Consensus       181 -------~~---~~~~~g~v~~~~~~~~--~~~~~--~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         181 -------MH---LGLAWSFVTYYSPNDV--RVVAE--G--FDFANGINISPDGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             -------HH---TTCCCEEEEEECSSCE--EEEEE--E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             -------Hh---hcCCceeEEEEcCCce--EEEcC--C--CCccceeEECCCCCEEEEEeCCCCeEEEEEe
Confidence                   00   1112278899986542  22221  1  334566664  35789999999999999876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.42  E-value=8.4e-06  Score=67.48  Aligned_cols=85  Identities=15%  Similarity=0.079  Sum_probs=58.4

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec-cCCCCCCceEEC--
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE-NLPGGPDNINLA--  123 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d--  123 (224)
                      .+|.|..+|..++++.........|++|+++|||++||++.. .+.|..+++++.+.   ....+ .....|.+++++  
T Consensus        40 ~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~---~~~~~i~~~~~~~~~~~s~~  115 (426)
T d1hzua2          40 DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEP---TKVAEIKIGIEARSVESSKF  115 (426)
T ss_dssp             TTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSC---EEEEEEECCSEEEEEEECCS
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCce---eEEEEEeCCCCCcceEEeee
Confidence            478999999988876555555567999999999999999875 47899999875321   11111 112245565554  


Q ss_pred             --CCCC-EEEEEecC
Q 046107          124 --PDGS-FWISLIKM  135 (224)
Q Consensus       124 --~dG~-l~va~~~~  135 (224)
                        +||+ ++++....
T Consensus       116 ~spDG~~l~v~~~~~  130 (426)
T d1hzua2         116 KGYEDRYTIAGAYWP  130 (426)
T ss_dssp             TTCTTTEEEEEEEES
T ss_pred             ecCCCCEEEEeecCC
Confidence              6887 56766555

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.39  E-value=2.5e-06  Score=71.77  Aligned_cols=174  Identities=13%  Similarity=0.016  Sum_probs=99.3

Q ss_pred             ecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCeEE-
Q 046107           19 ASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVVCESWKFRCI-   94 (224)
Q Consensus        19 ~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv~~~~~~~I~-   94 (224)
                      .+|| .+|+++.                 ..++|.++|.++.+.....  .....|+|++++|||+++||++...+.+. 
T Consensus        80 tpDGr~lfV~d~-----------------~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          80 RYDGKYLFINDK-----------------ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             EEEEEEEEEEET-----------------TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             cCCCCEEEEEcC-----------------CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            4688 4888874                 3678999999888776654  45788999999999999999986655542 


Q ss_pred             -----------------EEEccCCCcccceEeec-cCCCCCCceEECCCCC-EEEEEecCCch---------hhhhhccC
Q 046107           95 -----------------KHWLKLGDKRDREIFIE-NLPGGPDNINLAPDGS-FWISLIKMNSS---------AVETVHSS  146 (224)
Q Consensus        95 -----------------~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~dG~-l~va~~~~~~~---------~~~~~~~~  146 (224)
                                       .++...     .++... ..++.|.+++++++|. +|++....+..         ..+++...
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t-----~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~  217 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAET-----MDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF  217 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTT-----CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE
T ss_pred             cCcccccccccccceEEeecCcc-----ceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC
Confidence                             233322     111111 1346899999999998 66665544321         11111111


Q ss_pred             hhHHHHHhhchhhHHhhhhcCCCceEEEEEEC--CCCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          147 KNRKQLLEEHPELINQLMSTGKGAAAKVVKVS--ANGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       147 p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      .+-+...+ .|..   .+.....  ..+..++  ...+++..++  .|+..++ ..+.+++..+|+++..++.|.++++
T Consensus       218 n~p~~~~~-~~dG---k~~~v~~--~~v~vvd~~~~~~v~~~IP--vgksPhG-v~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         218 NVERIAAA-VKAG---NFKTIGD--SKVPVVDGRGESEFTRYIP--VPKNPHG-LNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             EHHHHHHH-HHTT---CCBCCTT--CCCCEEECSSSCSSEEEEC--CBSSCCC-EEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             CccceEEE-ecCC---CEEEeCC--CCcEEEEcccCCceEEEEe--CCCCccC-ceECCCCCEEEEeCCcCCcEEEEEe
Confidence            11111111 1100   0000111  1233333  2345556654  3432111 2334567889999999999999985

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.33  E-value=1.5e-05  Score=62.47  Aligned_cols=111  Identities=16%  Similarity=0.061  Sum_probs=70.3

Q ss_pred             eeeeccccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-------Ccccccee
Q 046107            3 KIHLCHLIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-------GLYFANGV   74 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-------~~~~pngi   74 (224)
                      +++.-..-..|.++++.+||+ +|++...                 .+.|..+|.++++......       ....|.++
T Consensus        32 ~t~~~~~~~~p~~l~~spDG~~l~v~~~~-----------------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v   94 (346)
T d1jmxb_          32 KSCVMPDKFGPGTAMMAPDNRTAYVLNNH-----------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF   94 (346)
T ss_dssp             EEEECSSCCSSCEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred             EEEEcCCCCCcceEEECCCCCEEEEEECC-----------------CCcEEEEeCccCeeeeeecccccccccCCceEEE
Confidence            344333345688999999995 7788633                 5789999988776543321       12458899


Q ss_pred             EEecCCCEEEEEeCC-----------CCeEEEEEccCCCc-ccceEeeccCCCCCCceEECCCCCEEEEE
Q 046107           75 ALSKHGDFVVVCESW-----------KFRCIKHWLKLGDK-RDREIFIENLPGGPDNINLAPDGSFWISL  132 (224)
Q Consensus        75 a~~~dg~~Lyv~~~~-----------~~~I~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~d~dG~l~va~  132 (224)
                      +++|||++||++...           ...+..++...... ......  ..+.....+....++.+|++.
T Consensus        95 ~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_          95 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEES
T ss_pred             EEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEeC
Confidence            999999999999742           45566666643211 111111  123345566677778888764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.27  E-value=1.8e-05  Score=61.82  Aligned_cols=86  Identities=16%  Similarity=0.062  Sum_probs=59.9

Q ss_pred             CceEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc---CCCCCCceE
Q 046107           48 HGQLLRYDPSSKQVSIVL---EGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN---LPGGPDNIN  121 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~---~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~---~~~~p~~i~  121 (224)
                      +++|..+|.+++++....   .....|.+|+++|||++|||+....+.|..|++..++.-. ..-...   ....+.+++
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~-~~~~~~~~~~~~~~~~v~   88 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG-RIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE-EEECCBTTEEEECTTCEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE-EEecCCCcccccceeeEE
Confidence            578889998877654332   2346689999999999999999888999999987532111 111111   113688999


Q ss_pred             ECCCCC-EEEEEec
Q 046107          122 LAPDGS-FWISLIK  134 (224)
Q Consensus       122 ~d~dG~-l~va~~~  134 (224)
                      +.++|+ +|++...
T Consensus        89 ~s~dg~~l~~~~~~  102 (337)
T d1pbyb_          89 LSPDGKTLAIYESP  102 (337)
T ss_dssp             ECTTSSEEEEEEEE
T ss_pred             EcCCCcEEEEeecC
Confidence            999997 5565544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=4.8e-05  Score=59.28  Aligned_cols=101  Identities=21%  Similarity=0.131  Sum_probs=68.9

Q ss_pred             cccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec------CccccceeEEecCCCE
Q 046107           10 IRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE------GLYFANGVALSKHGDF   82 (224)
Q Consensus        10 ~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~------~~~~pngia~~~dg~~   82 (224)
                      -..|.++++.+||+ +|++..                 ..+.|..+|.++++......      ....+.+++++||+++
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~-----------------~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~   95 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVN-----------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT   95 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEET-----------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE
T ss_pred             CCCccEEEECCCCCEEEEEEC-----------------CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcE
Confidence            35688999999996 677753                 25789999988776554322      1356789999999999


Q ss_pred             EEEEeC-----------CCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEE
Q 046107           83 VVVCES-----------WKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWIS  131 (224)
Q Consensus        83 Lyv~~~-----------~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va  131 (224)
                      +|++..           ...++..++....   .....+ .....|.++++++||. +|++
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_          96 LAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAF-EAPRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEE-ECCSSCCCEEECTTSSCEEEE
T ss_pred             EEEeecCCcceeeeccccccceeeccccCC---eEEEec-cccCCceEEEEcCCCCEEEEE
Confidence            999875           2345666666431   111111 1345789999999997 4444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=4e-05  Score=63.21  Aligned_cols=79  Identities=11%  Similarity=0.003  Sum_probs=54.8

Q ss_pred             ceeeeccccccccceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE--ecCccccceeEE--
Q 046107            2 IKIHLCHLIRFANDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV--LEGLYFANGVAL--   76 (224)
Q Consensus         2 ~~~~~~~~~~~~n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~--~~~~~~pngia~--   76 (224)
                      +++++..  ..|+++++.|||+ +|++.                  .+|.|..+|.++++....  ......+.++++  
T Consensus        55 ~~~l~~g--~~~~~vafSPDGk~l~~~~------------------~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          55 VKVIDTG--YAVHISRMSASGRYLLVIG------------------RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEEEECC--SSEEEEEECTTSCEEEEEE------------------TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEEeCC--CCeeEEEECCCCCEEEEEe------------------CCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            3445543  4688999999996 55553                  257788888876654332  233445666555  


Q ss_pred             --ecCCCEEEEEeCCCCeEEEEEccC
Q 046107           77 --SKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        77 --~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                        +|||++||++....+.+..++...
T Consensus       115 ~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2         115 FKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             eecCCCCEEEEeecCCCeEEEEcCCc
Confidence              579999999998889999888764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.16  E-value=2.2e-05  Score=61.95  Aligned_cols=95  Identities=19%  Similarity=0.061  Sum_probs=65.3

Q ss_pred             Eec-CCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-CeEEE
Q 046107           18 EAS-DGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK-FRCIK   95 (224)
Q Consensus        18 ~~~-~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~-~~I~~   95 (224)
                      +.| ||+++.+..                  .|.|+.++.+++++..+. .......++|+|||++|+++.... ..|+.
T Consensus        10 fSP~dG~~~a~~~------------------~g~v~v~d~~~~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3          10 FSPLDGDLIAFVS------------------RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             EEECGGGCEEEEE------------------TTEEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             ccCCCCCEEEEEE------------------CCeEEEEECCCCcEEEcc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence            566 887666642                  478999998877766553 344567999999999887765444 46778


Q ss_pred             EEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           96 HWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ++..++   ..+.+. ...+....+++.+||+..++....
T Consensus        71 ~d~~~~---~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~  106 (360)
T d1k32a3          71 YDYRTG---KAEKFE-ENLGNVFAMGVDRNGKFAVVANDR  106 (360)
T ss_dssp             EETTTC---CEEECC-CCCCSEEEEEECTTSSEEEEEETT
T ss_pred             EECCCC---cEEEee-CCCceEEeeeecccccccceeccc
Confidence            887653   233332 233456789999999977776665

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=8.6e-06  Score=65.87  Aligned_cols=80  Identities=10%  Similarity=-0.008  Sum_probs=57.6

Q ss_pred             ccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--------CccccceeEEecCCCEE
Q 046107           13 ANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--------GLYFANGVALSKHGDFV   83 (224)
Q Consensus        13 ~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--------~~~~pngia~~~dg~~L   83 (224)
                      ...+++.+|| .||+.+..  +.      ....+..++.|..+|..+++......        ....|.+++++|||++|
T Consensus        67 ~~~~a~spDg~~i~~~~~~--~~------~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l  138 (368)
T d1mdah_          67 LSLAVAGHSGSDFALASTS--FA------RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL  138 (368)
T ss_dssp             TCEEEECTTSSCEEEEEEE--ET------TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCE
T ss_pred             CCcceECCCCCEEEEEccc--Cc------cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEE
Confidence            3478889998 58887642  11      01123346779999998776554321        24568899999999999


Q ss_pred             EEEeCCCCeEEEEEccC
Q 046107           84 VVCESWKFRCIKHWLKL  100 (224)
Q Consensus        84 yv~~~~~~~I~~~~~~~  100 (224)
                      ||++...+.|..+++..
T Consensus       139 ~va~~~~~~v~~~d~~~  155 (368)
T d1mdah_         139 LFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             EEEECSSSCEEEEEETT
T ss_pred             EEEeCCCCeEEEEECCC
Confidence            99998889999999865

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.11  E-value=3.2e-05  Score=64.81  Aligned_cols=81  Identities=7%  Similarity=-0.050  Sum_probs=50.3

Q ss_pred             cccccceEEecCC-cEEEEeCCCCCCcchh--hhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEE
Q 046107           10 IRFANDVIEASDG-SLYITVSSTKFAPKAY--YLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVC   86 (224)
Q Consensus        10 ~~~~n~v~~~~~G-~ly~t~~~~~~~~~~~--~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~   86 (224)
                      ...|+++++.++| ++|++...+ +....-  -..+........+..+|+.+.++.....-...|.+++++|||+++|++
T Consensus       115 g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt  193 (441)
T d1qnia2         115 VQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATST  193 (441)
T ss_dssp             CCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEE
T ss_pred             CCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEE
Confidence            5679999999998 578876442 111000  000001112234566888766554433344679999999999999999


Q ss_pred             eCCCC
Q 046107           87 ESWKF   91 (224)
Q Consensus        87 ~~~~~   91 (224)
                      +.++.
T Consensus       194 ~~nse  198 (441)
T d1qnia2         194 CYNSE  198 (441)
T ss_dssp             ESCTT
T ss_pred             ecCCC
Confidence            87654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.04  E-value=0.0001  Score=56.90  Aligned_cols=86  Identities=16%  Similarity=0.070  Sum_probs=51.5

Q ss_pred             CceEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCC-cccceEeeccCCCCCCceEECC
Q 046107           48 HGQLLRYDPSSKQVSIV--LEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGD-KRDREIFIENLPGGPDNINLAP  124 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~--~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~  124 (224)
                      +|.|..+|.++++....  .......+.++++|++++|+.+ ...+.|..++..... ......+. ........+++.+
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~  234 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT-DQSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSP  234 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc-ccccccccccccc
Confidence            56666666554544332  2233456789999999866555 456789999986421 11111111 1112346789999


Q ss_pred             CCCEEEEEecC
Q 046107          125 DGSFWISLIKM  135 (224)
Q Consensus       125 dG~l~va~~~~  135 (224)
                      +|.+.++....
T Consensus       235 ~~~~l~sgs~d  245 (299)
T d1nr0a2         235 DNVRLATGSLD  245 (299)
T ss_dssp             TSSEEEEEETT
T ss_pred             cccceEEEcCC
Confidence            99987776655

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=0.00081  Score=52.91  Aligned_cols=131  Identities=9%  Similarity=-0.034  Sum_probs=83.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .+|.+..+|..+++.............++++|+++.|+++ ...+.|..++++...   ..... ........+++.++|
T Consensus       203 ~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~i~d~~~~~---~~~~~-~~~~~i~~v~~s~~g  277 (337)
T d1gxra_         203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPD---KYQLH-LHESCVLSLKFAYCG  277 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSC---EEEEC-CCSSCEEEEEECTTS
T ss_pred             ccccccccccccceeecccccccceEEEEEccccccccee-ccccccccccccccc---ccccc-ccccccceEEECCCC
Confidence            3567777787655543333344556789999999866554 456889999986422   11111 122345789999999


Q ss_pred             CEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEeCCCCCcccceeEEEEE-
Q 046107          127 SFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFNDPNAKNISFVTSALEF-  204 (224)
Q Consensus       127 ~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~~~g~~~~~~t~~~~~-  204 (224)
                      ++.++....                                    +.|..+| +.|+.+..+... +    .++.+... 
T Consensus       278 ~~l~s~s~D------------------------------------g~i~iwd~~~~~~~~~~~~~-~----~v~~~~~s~  316 (337)
T d1gxra_         278 KWFVSTGKD------------------------------------NLLNAWRTPYGASIFQSKES-S----SVLSCDISV  316 (337)
T ss_dssp             SEEEEEETT------------------------------------SEEEEEETTTCCEEEEEECS-S----CEEEEEECT
T ss_pred             CEEEEEeCC------------------------------------CeEEEEECCCCCEEEEccCC-C----CEEEEEEeC
Confidence            988876665                                    4566666 457777666432 2    35666654 


Q ss_pred             CCEEEEEeCCCCeEEEeeC
Q 046107          205 QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       205 ~g~lyv~~~~~~~i~~~~~  223 (224)
                      +++..++....+.|.+.+|
T Consensus       317 d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEE
Confidence            4666666666677877664

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=0.00024  Score=55.92  Aligned_cols=64  Identities=14%  Similarity=-0.022  Sum_probs=44.0

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+.++++|+++.++++-+..+.|..|+....   ...............++++++|+++++....
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d  210 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGD  210 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccceeeeccccccccccccccccc---ccccccccccccccccccCcccccccccccc
Confidence            345789999999877888777889999988642   1111111112345789999999988776654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.87  E-value=0.00037  Score=54.54  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             eEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEE
Q 046107           50 QLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFW  129 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~  129 (224)
                      .|+.+|.++++...+.......+.++++|||++|..+ ...+.++.++.++..   ..............+++.+||++.
T Consensus        67 ~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3          67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGK---PTVIERSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC---EEEEEECSSSCCCCEEECTTSCEE
T ss_pred             EEEEEECCCCcEEEeeCCCceEEeeeeccccccccee-ccccccccccccccc---eeeeeecccccccchhhccceeee
Confidence            5788888877777766666777899999999966555 466789999987532   222222233456789999999866


Q ss_pred             EEEe
Q 046107          130 ISLI  133 (224)
Q Consensus       130 va~~  133 (224)
                      +...
T Consensus       143 a~~~  146 (360)
T d1k32a3         143 AYGF  146 (360)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            5443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=0.00051  Score=54.13  Aligned_cols=157  Identities=10%  Similarity=-0.033  Sum_probs=86.7

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCe
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFR   92 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~   92 (224)
                      +++++.++|+..++-..               ...+.+..++.++++......+ ....+.++++|+++.++++....+.
T Consensus       119 ~~v~~s~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~  183 (325)
T d1pgua1         119 SDISWDFEGRRLCVVGE---------------GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS  183 (325)
T ss_dssp             EEEEECTTSSEEEEEEC---------------CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTE
T ss_pred             EEEEECCCCCccceeec---------------cccceEEEEeecccccceeeeecccccccccccccccceEEEeecccc
Confidence            46677777765444221               1123334444444443323333 3445789999998877777777888


Q ss_pred             EEEEEccCCCcccceEeecc--CCCCCCceEECCC-CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCC
Q 046107           93 CIKHWLKLGDKRDREIFIEN--LPGGPDNINLAPD-GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKG  169 (224)
Q Consensus        93 I~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~d-G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  169 (224)
                      |..++....+  ........  .......+++.|+ +.++++....                                  
T Consensus       184 v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d----------------------------------  227 (325)
T d1pgua1         184 VVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD----------------------------------  227 (325)
T ss_dssp             EEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT----------------------------------
T ss_pred             cccccccccc--cceecccccCCCCccEEeeeccccceeccccccc----------------------------------
Confidence            9888875311  11111111  1223567889987 5666665555                                  


Q ss_pred             ceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          170 AAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       170 ~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                        +.|..+|. .++.+..+..+..............+++.+++......|.+.++
T Consensus       228 --~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         228 --RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             --CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             --cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence              45666663 57777777544333222222333345666666666667766654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=0.00086  Score=52.60  Aligned_cols=135  Identities=10%  Similarity=0.037  Sum_probs=83.5

Q ss_pred             CceEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc---C---CCCCCce
Q 046107           48 HGQLLRYDPSSKQVSIVLEGL-YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN---L---PGGPDNI  120 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~-~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~---~---~~~p~~i  120 (224)
                      +|.|..+|.++++........ ...+.++++|+++.|+.+ ...+.|..|+.....  ....+...   .   .+....+
T Consensus       168 d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~-~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST-GGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccCccccccccc-ccccccccccccccc--cccccccccccccccccccccc
Confidence            577888887766655544443 344799999999855544 457889999876421  11111110   1   1234678


Q ss_pred             EECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCccccee
Q 046107          121 NLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVT  199 (224)
Q Consensus       121 ~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t  199 (224)
                      ++.++|++.++....                                    +.|..+|. .|+.+..+...... .....
T Consensus       245 ~~s~~~~~l~tgs~D------------------------------------g~v~iwd~~t~~~~~~l~~~~~~-~~~~~  287 (311)
T d1nr0a1         245 TWSPDGTKIASASAD------------------------------------KTIKIWNVATLKVEKTIPVGTRI-EDQQL  287 (311)
T ss_dssp             EECTTSSEEEEEETT------------------------------------SEEEEEETTTTEEEEEEECCSSG-GGCEE
T ss_pred             ccCCCCCEEEEEeCC------------------------------------CeEEEEECCCCcEEEEEECCCCc-cceEE
Confidence            999999988776655                                    46667774 58888888654321 22334


Q ss_pred             EEEEECCEEEEEeCCCCeEEEeeC
Q 046107          200 SALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       200 ~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      .+...++.|+.++ .++.|...+.
T Consensus       288 ~~~~~~~~l~s~s-~dG~i~~wd~  310 (311)
T d1nr0a1         288 GIIWTKQALVSIS-ANGFINFVNP  310 (311)
T ss_dssp             EEEECSSCEEEEE-TTCCEEEEET
T ss_pred             EEEecCCEEEEEE-CCCEEEEEeC
Confidence            4455667776666 4677776653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.80  E-value=0.0021  Score=50.76  Aligned_cols=108  Identities=11%  Similarity=0.003  Sum_probs=65.6

Q ss_pred             ccceEEecCC-cEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec--------CccccceeEEecCCCEE
Q 046107           13 ANDVIEASDG-SLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE--------GLYFANGVALSKHGDFV   83 (224)
Q Consensus        13 ~n~v~~~~~G-~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~--------~~~~pngia~~~dg~~L   83 (224)
                      ..++++.||| .||++.....        ........+.|..+|..+++......        ....|+++++++|++.+
T Consensus        68 ~~~~a~SpDG~~l~va~~~~~--------~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  139 (373)
T d2madh_          68 LPNPVAAHSGSEFALASTSFS--------RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL  139 (373)
T ss_pred             CccEEEcCCCCEEEEEeecCC--------cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE
Confidence            3378999999 5777754310        01112346778889987776543221        23456899999999999


Q ss_pred             EEEeCC-CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC-EEEEEecC
Q 046107           84 VVCESW-KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS-FWISLIKM  135 (224)
Q Consensus        84 yv~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~~  135 (224)
                      |+.... .+.+..++....     ++..  ....|.++++.++|+ +|++....
T Consensus       140 ~v~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~s~~g~~~~v~~~~d  186 (373)
T d2madh_         140 LFFQFAAGPAVGLVVQGGS-----SDDQ--LLSSPTCYHIHPGAPSTFYLLCAQ  186 (373)
T ss_pred             EEEEEcCCCceEEeeccCC-----eEEE--EeccceeEEEecCCCcEEEEEcCC
Confidence            888744 445555555331     1111  123577888888875 66665554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.76  E-value=0.0027  Score=50.61  Aligned_cols=104  Identities=13%  Similarity=0.067  Sum_probs=64.7

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEE--ecCc-cccceeEEecCCCEEEEEeCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIV--LEGL-YFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~--~~~~-~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...+++.+||++.++-.                 .+|.|..++.++++.+..  ..+. ...+.|+|+|++++|..+ +.
T Consensus        10 It~~~~s~dg~~la~~~-----------------~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~-s~   71 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICP-----------------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GT   71 (371)
T ss_dssp             CCEEEECTTSSEEEEEC-----------------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ET
T ss_pred             eEEEEECCCCCEEEEEe-----------------CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEE-EC
Confidence            35789999998777632                 256666666655654433  2333 344899999999955544 45


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .+.|..++++.... ...............++++++|+..++....
T Consensus        72 D~~i~vWd~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d  116 (371)
T d1k8kc_          72 DRNAYVWTLKGRTW-KPTLVILRINRAARCVRWAPNEKKFAVGSGS  116 (371)
T ss_dssp             TSCEEEEEEETTEE-EEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEeeccccc-ccccccccccccccccccccccccceeeccc
Confidence            67888888864221 1111111122346788999999877665554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=0.0023  Score=48.86  Aligned_cols=113  Identities=12%  Similarity=0.187  Sum_probs=72.4

Q ss_pred             eeeeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-C-ccccceeEEecCC
Q 046107            3 KIHLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-G-LYFANGVALSKHG   80 (224)
Q Consensus         3 ~~~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-~-~~~pngia~~~dg   80 (224)
                      ++..| .-...+.+++.+||++.+|-.                 .+|.|..+|.++++...... . ....+.++++|+|
T Consensus         6 ~~~~G-H~~~V~~l~~s~dg~~l~s~s-----------------~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g   67 (299)
T d1nr0a2           6 QVRYG-HNKAITALSSSADGKTLFSAD-----------------AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG   67 (299)
T ss_dssp             EEECC-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred             eEcCC-CCCCcEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc
Confidence            34444 445677899999998777632                 36778888877666544432 2 2334789999999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           81 DFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        81 ~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      + ++++. ..+.|..++..+................+..+++.++|++.++....
T Consensus        68 ~-~~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~  120 (299)
T d1nr0a2          68 D-LFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK  120 (299)
T ss_dssp             C-EEEEE-TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS
T ss_pred             e-eeccc-ceeeEEEeccCCccccccccccccccccccccccccccccccccccc
Confidence            7 65554 46788888876432222222222234467889999999987776654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.65  E-value=0.0026  Score=48.86  Aligned_cols=131  Identities=10%  Similarity=0.050  Sum_probs=81.9

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc-CCCCCCceEECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN-LPGGPDNINLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~  124 (224)
                      .++.|..+|..+++......+ ....+.++++|+++.|+ +-+..+.|..++.....  ....+... .......+++++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~-s~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECS
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeecccc--cccccccccccCceEEEEECC
Confidence            467788888776665444433 34457899999998554 44567888889886421  11222111 122346789999


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEE
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALE  203 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~  203 (224)
                      +|++.++....                                    +.|..+|. .++.+..+....+    .++.++.
T Consensus       281 ~~~~l~~g~~d------------------------------------g~i~iwd~~~~~~~~~~~~H~~----~V~~l~~  320 (340)
T d1tbga_         281 SGRLLLAGYDD------------------------------------FNCNVWDALKADRAGVLAGHDN----RVSCLGV  320 (340)
T ss_dssp             SSCEEEEEETT------------------------------------SCEEEEETTTCCEEEEECCCSS----CEEEEEE
T ss_pred             CCCEEEEEECC------------------------------------CEEEEEECCCCcEEEEEcCCCC----CEEEEEE
Confidence            99988876665                                    46677774 5888888865433    4667665


Q ss_pred             E-CCEEEEEeCCCCeEEE
Q 046107          204 F-QGNLYLASINSNFIGK  220 (224)
Q Consensus       204 ~-~g~lyv~~~~~~~i~~  220 (224)
                      . ++++.++......|.+
T Consensus       321 s~d~~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         321 TDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             CTTSSCEEEEETTSCEEE
T ss_pred             eCCCCEEEEEccCCEEEE
Confidence            5 4555555545555543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.60  E-value=0.00033  Score=58.71  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             CeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeecc---C--CCCCCceEECCC----CCEE
Q 046107           59 KQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIEN---L--PGGPDNINLAPD----GSFW  129 (224)
Q Consensus        59 g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~---~--~~~p~~i~~d~d----G~l~  129 (224)
                      =+++.+++++..|.+|++.|||+ |||++..+++|++++.+++.......+.+.   .  .+..-+|+++++    +.+|
T Consensus        17 f~~~~ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iY   95 (450)
T d1crua_          17 FDKKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (450)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             cEEEEEECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEE
Confidence            35778889999999999999997 999998889999998765332221111110   0  122346999875    6789


Q ss_pred             EEEe
Q 046107          130 ISLI  133 (224)
Q Consensus       130 va~~  133 (224)
                      ++-.
T Consensus        96 vsyt   99 (450)
T d1crua_          96 ISGT   99 (450)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.0044  Score=48.44  Aligned_cols=136  Identities=10%  Similarity=-0.010  Sum_probs=77.3

Q ss_pred             CceEEEEeCCCCeEEEEec---C-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEEC
Q 046107           48 HGQLLRYDPSSKQVSIVLE---G-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLA  123 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~---~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  123 (224)
                      +|.+..++....+......   . ......++++||+..++++-...+.|..|+.....  ....+. .......++.+.
T Consensus       181 d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~-~~~~~v~~~~~s  257 (325)
T d1pgua1         181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIE-DDQEPVQGGIFA  257 (325)
T ss_dssp             TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECC-BTTBCCCSCEEE
T ss_pred             ccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc--cccccc-ccccccccceee
Confidence            5666666754344332221   1 23346899999865577777778899999976421  112221 111223444444


Q ss_pred             ---CCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccce-
Q 046107          124 ---PDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFV-  198 (224)
Q Consensus       124 ---~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~-  198 (224)
                         ++|.++++....                                    +.|...|. .|+.+..+...... .... 
T Consensus       258 ~~~~dg~~l~s~s~D------------------------------------~~i~iwd~~~~~~~~~~~~~~~~-~~~~~  300 (325)
T d1pgua1         258 LSWLDSQKFATVGAD------------------------------------ATIRVWDVTTSKCVQKWTLDKQQ-LGNQQ  300 (325)
T ss_dssp             EEESSSSEEEEEETT------------------------------------SEEEEEETTTTEEEEEEECCTTC-GGGCE
T ss_pred             eeccCCCEEEEEeCC------------------------------------CeEEEEECCCCCEEEEEEecCCc-ccCeE
Confidence               678877776655                                    45666674 58888877654322 2222 


Q ss_pred             eEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          199 TSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       199 t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      ..+...++..+++......|.+++|
T Consensus       301 ~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         301 VGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEECCCCEEEEEECCCEEEEEEC
Confidence            2233444444566666688888775

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.57  E-value=0.00043  Score=57.28  Aligned_cols=162  Identities=12%  Similarity=-0.014  Sum_probs=92.0

Q ss_pred             CCceEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCe-------------------EEEEEccCCCccc
Q 046107           47 PHGQLLRYDPSSKQVSIVL--EGLYFANGVALSKHGDFVVVCESWKFR-------------------CIKHWLKLGDKRD  105 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~--~~~~~pngia~~~dg~~Lyv~~~~~~~-------------------I~~~~~~~~~~~~  105 (224)
                      .+++|-|+|.++-++..+.  ...+.++|+...+++++.||.+.....                   +..+|.+..+. .
T Consensus       108 an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V-~  186 (459)
T d1fwxa2         108 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV-A  186 (459)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEE-E
T ss_pred             CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceE-E
Confidence            4789999999877776653  567888999999888889998754433                   34454432110 1


Q ss_pred             ceEeeccCCCCCCceEECCCCCEEEEEecCC---chhhhhhccC-------hhHHHHHhhchhhHHhhhhcCCCceEEEE
Q 046107          106 REIFIENLPGGPDNINLAPDGSFWISLIKMN---SSAVETVHSS-------KNRKQLLEEHPELINQLMSTGKGAAAKVV  175 (224)
Q Consensus       106 ~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~---~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~v~  175 (224)
                      .++   ..++.|++++++++|++.++.....   ..+.+.....       .+- +..+.++..       .-...+.|-
T Consensus       187 ~QV---~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~-rie~av~~G-------k~~eingV~  255 (459)
T d1fwxa2         187 WQV---LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA-EIEKAIAAG-------DYQELNGVK  255 (459)
T ss_dssp             EEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH-HHHHHHHHT-------CSEEETTEE
T ss_pred             EEe---eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH-HhHHhhhcC-------CcEEeCCce
Confidence            112   2346899999999999655554331   1222222211       111 111111110       000012234


Q ss_pred             EECCC---C-cEEEEEeCCCCCcccceeEEEEECCEEEEEeCCCCeEEEeeC
Q 046107          176 KVSAN---G-SIIREFNDPNAKNISFVTSALEFQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       176 ~~~~~---G-~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~~~~~i~~~~~  223 (224)
                      .+|..   + +.++.++.|..   +.-..+.+++..+|+++-.++.+.++++
T Consensus       256 VVD~~~~~~~~v~~yIPVpKs---PHGV~vSPDGKyi~VaGKLs~tVSViD~  304 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDV  304 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             eecccccCCcceeEEEecCCC---CCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence            55533   2 34445544432   1222445678999999999999999986

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.50  E-value=0.0036  Score=47.20  Aligned_cols=81  Identities=16%  Similarity=0.043  Sum_probs=53.8

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-CCC----CeEEEEEccCCCcccceEeecc------CCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCE-SWK----FRCIKHWLKLGDKRDREIFIEN------LPGG  116 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~-~~~----~~I~~~~~~~~~~~~~~~~~~~------~~~~  116 (224)
                      .|.||.++.++++.+++........+.+|||||++|+++. ...    ..|++++..++.   .+.+...      ....
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~---~~~lt~~~~~~~~~~~~   96 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---IKRITYFSGKSTGRRMF   96 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE---EEECCCCCEEEETTEEC
T ss_pred             CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc---eEEeeecCCCccCcccc
Confidence            3579999998888888776666677899999999886553 222    358888887642   2221111      1124


Q ss_pred             CCceEECCCCCEEEE
Q 046107          117 PDNINLAPDGSFWIS  131 (224)
Q Consensus       117 p~~i~~d~dG~l~va  131 (224)
                      ....++.+||+..+-
T Consensus        97 ~~~~~~spdg~~l~~  111 (281)
T d1k32a2          97 TDVAGFDPDGNLIIS  111 (281)
T ss_dssp             SEEEEECTTCCEEEE
T ss_pred             ccccccCCCCCEEEE
Confidence            567788999985443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.011  Score=46.06  Aligned_cols=83  Identities=12%  Similarity=0.144  Sum_probs=52.6

Q ss_pred             CceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .+.+..++..+++....... ....+.++++++++.++++. ..+.|..+++....  ....+  ...+....+++++++
T Consensus       162 d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~-~d~~v~i~d~~~~~--~~~~~--~~~~~i~~l~~~~~~  236 (337)
T d1gxra_         162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGR--QLQQH--DFTSQIFSLGYCPTG  236 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTE--EEEEE--ECSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccce--eeccc--ccccceEEEEEcccc
Confidence            45677777665655444433 33456899999998666654 56889999886421  11122  223456788899999


Q ss_pred             CEEEEEecC
Q 046107          127 SFWISLIKM  135 (224)
Q Consensus       127 ~l~va~~~~  135 (224)
                      ++.++....
T Consensus       237 ~~l~~~~~d  245 (337)
T d1gxra_         237 EWLAVGMES  245 (337)
T ss_dssp             SEEEEEETT
T ss_pred             cccceeccc
Confidence            877765544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.40  E-value=0.0035  Score=51.74  Aligned_cols=183  Identities=10%  Similarity=0.080  Sum_probs=98.2

Q ss_pred             ccccccceEEecCC-cEEEEeCCCCCCcc-----hhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCE
Q 046107            9 LIRFANDVIEASDG-SLYITVSSTKFAPK-----AYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDF   82 (224)
Q Consensus         9 ~~~~~n~v~~~~~G-~ly~t~~~~~~~~~-----~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~   82 (224)
                      -...++++.+..++ +.||....+ +...     ..+.+.  ..-.+.+..+|.++.++..-..-...|.++++++||++
T Consensus       130 n~~~~HG~r~~~~p~T~YV~~~~e-~~vP~pndg~~l~d~--~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~  206 (459)
T d1fwxa2         130 NAKGIHGLRPQKWPRSNYVFCNGE-DETPLVNDGTNMEDV--ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKW  206 (459)
T ss_dssp             SCCSEEEEEECCSSBCSEEEEEEC-SCEESSCSSSSTTCG--G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSE
T ss_pred             CCCCCceeecccCCCeEEEEccCc-cccccCCCCccccch--hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCE
Confidence            35667788877655 567765432 2110     001111  12245677899887766544333456889999999999


Q ss_pred             EEEEeCCCC--------------eEEEEEcc--------CCC--cccceE-------------eeccCCCCCCceEECCC
Q 046107           83 VVVCESWKF--------------RCIKHWLK--------LGD--KRDREI-------------FIENLPGGPDNINLAPD  125 (224)
Q Consensus        83 Lyv~~~~~~--------------~I~~~~~~--------~~~--~~~~~~-------------~~~~~~~~p~~i~~d~d  125 (224)
                      +|+++.++.              .|..++..        |..  .....+             ++ ..+..|.|+.++||
T Consensus       207 af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yI-PVpKsPHGV~vSPD  285 (459)
T d1fwxa2         207 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYI-PIANNPHGCNMAPD  285 (459)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEE-EEESSCCCEEECTT
T ss_pred             EEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEE-ecCCCCCceEECCC
Confidence            999986542              33334421        100  000011             11 12458999999999


Q ss_pred             CCEEEEEecCCc--hhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCCCcccceeEEEE
Q 046107          126 GSFWISLIKMNS--SAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNAKNISFVTSALE  203 (224)
Q Consensus       126 G~l~va~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g~~~~~~t~~~~  203 (224)
                      |...++...-.+  +++++-    .+.+..+                 .   +++|...+....+  -|  +.......+
T Consensus       286 GKyi~VaGKLs~tVSViD~~----Ki~~~~~-----------------~---~~~~~~~~~~e~e--lg--lgPLht~fd  337 (459)
T d1fwxa2         286 KKHLCVAGKLSPTVTVLDVT----RFDAVFY-----------------E---NADPRSAVVAEPE--LG--LGPLHTAFD  337 (459)
T ss_dssp             SSEEEEECTTSSBEEEEEGG----GHHHHHH-----------------S---CC-GGGGEEECCB--CC--SCEEEEEEC
T ss_pred             CCEEEEeCCcCCcEEEEEeh----hhhhhhc-----------------c---cCCccccEEeecc--cC--cCccccccC
Confidence            996666655432  233220    0111111                 0   1233333322222  13  344555555


Q ss_pred             ECCEEEEEeCCCCeEEEeeC
Q 046107          204 FQGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       204 ~~g~lyv~~~~~~~i~~~~~  223 (224)
                      ..|+.|.+.+-...|.+-++
T Consensus       338 ~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         338 GRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             TTSEEEEEETTTTEEEEEEH
T ss_pred             CCceEEEEeeccceEEEEec
Confidence            57899999999998887653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.31  E-value=0.0064  Score=48.28  Aligned_cols=106  Identities=8%  Similarity=-0.066  Sum_probs=59.5

Q ss_pred             cccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEe--cC-ccccceeEEecCCCEEEEEeC
Q 046107           12 FANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVL--EG-LYFANGVALSKHGDFVVVCES   88 (224)
Q Consensus        12 ~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~--~~-~~~pngia~~~dg~~Lyv~~~   88 (224)
                      ..+.+++.++|++.++-.                 .++.|..++.++++.+...  .+ ......++++|+++.|+++. 
T Consensus        53 ~V~~l~fsp~~~~l~s~s-----------------~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-  114 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCG-----------------TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-  114 (371)
T ss_dssp             CEEEEEEETTTTEEEEEE-----------------TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             CEEEEEECCCCCEEEEEE-----------------CCCeEEEEeecccccccccccccccccccccccccccccceeec-
Confidence            346788888887666531                 2455655565445444332  22 34467899999999776665 


Q ss_pred             CCCeEEEEEccCCCccc-ceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           89 WKFRCIKHWLKLGDKRD-REIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        89 ~~~~I~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ..+.|..++.+...... ..............++++|+|+++++....
T Consensus       115 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_         115 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            44556665554321111 111111112234678888999877765543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.014  Score=43.69  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             ccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCC
Q 046107           11 RFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        11 ~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      ...+.|++.++|++.+|-.                 .+|.|..+|..+++......+ ....+.+++++++..+... ..
T Consensus        18 ~~I~~l~~sp~~~~l~s~s-----------------~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~-~~   79 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVMVSAS-----------------EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-SA   79 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEE-----------------SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE-ET
T ss_pred             CCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccc-cc
Confidence            3467899999999887742                 367777777765654433333 3445789999999855444 44


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+..++....   ...............+.+.++++..++....
T Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  122 (317)
T d1vyhc1          80 DMTIKLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRD  122 (317)
T ss_dssp             TSCCCEEETTSS---CEEECCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             cccccccccccc---ccccccccccccceeeeccCCCceEEeeccC
Confidence            555555655321   1111111122345667778888877666554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.23  E-value=0.0016  Score=50.87  Aligned_cols=102  Identities=14%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             cceEEecCCc-EEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCccccceeEEecCCCE-EEEEeCCCC
Q 046107           14 NDVIEASDGS-LYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDF-VVVCESWKF   91 (224)
Q Consensus        14 n~v~~~~~G~-ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~-Lyv~~~~~~   91 (224)
                      ..+++.++|. +|++.....        ..........|..+|..+++..........|.+++++|||+. ||++....+
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~  323 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRD--------EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK  323 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECC--------TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTT
T ss_pred             EEEEEeCCCCeEEEEeccCC--------ceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCC
Confidence            4577778874 555532100        001122345789999877765544444567899999999974 688888889


Q ss_pred             eEEEEEccCCCcccceEeeccCCCCCCceEECCCC
Q 046107           92 RCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDG  126 (224)
Q Consensus        92 ~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG  126 (224)
                      .|..|+...++  ..+.+ ......|.-+.+..+|
T Consensus       324 ~i~v~D~~tg~--~~~~i-~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         324 TLYIHDAESGE--ELRSV-NQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEEETTTCC--EEEEE-CCCCSSCCEEECCCCC
T ss_pred             EEEEEECCCCC--EEEEE-eCcCCCccEEEeCCCC
Confidence            99999986432  12222 1233467777766544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.02  Score=42.77  Aligned_cols=99  Identities=12%  Similarity=0.032  Sum_probs=60.0

Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchh
Q 046107           79 HGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPE  158 (224)
Q Consensus        79 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (224)
                      ++. ++++.+..+.|..++.....  ....+. ........+++.++|++.++....                       
T Consensus       216 ~~~-~~~~~~~d~~i~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d-----------------------  268 (317)
T d1vyhc1         216 PGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCADD-----------------------  268 (317)
T ss_dssp             -CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEETT-----------------------
T ss_pred             CCc-eeEeccCCCEEEEEECCCCc--EEEEEe-CCCCCEEEEEECCCCCEEEEEECC-----------------------
Confidence            344 44444566788888875421  112221 122345778999999987776655                       


Q ss_pred             hHHhhhhcCCCceEEEEEECC-CCcEEEEEeCCCCCcccceeEEEEE-CCEEEEEeCCCCeEEEe
Q 046107          159 LINQLMSTGKGAAAKVVKVSA-NGSIIREFNDPNAKNISFVTSALEF-QGNLYLASINSNFIGKL  221 (224)
Q Consensus       159 ~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~~g~~~~~~t~~~~~-~g~lyv~~~~~~~i~~~  221 (224)
                                   +.|..+|. +++.+..+....+    .++.+... ++++.++......|.+.
T Consensus       269 -------------g~i~iwd~~~~~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         269 -------------KTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             -------------TEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             -------------CeEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence                         57788884 5888888865443    46776654 45555555555666554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.042  Score=42.83  Aligned_cols=61  Identities=11%  Similarity=0.045  Sum_probs=36.2

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      -+.|+++|||++|+.+ +..+.|..++....   ...............+++.+++...+.....
T Consensus       124 V~~l~~s~~~~~l~s~-~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         124 IRSVCFSPDGKFLATG-AEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             EEEEEECTTSSEEEEE-ETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCCcceec-cccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence            3579999999855544 45678888887532   1111111112234567777777766655444

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.027  Score=44.03  Aligned_cols=136  Identities=13%  Similarity=0.035  Sum_probs=79.0

Q ss_pred             CCceEEEEeCCCCeEEEEec-------C-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCc-c--------cceEe
Q 046107           47 PHGQLLRYDPSSKQVSIVLE-------G-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDK-R--------DREIF  109 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~-------~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~-~--------~~~~~  109 (224)
                      .+|.|..++..++.......       + ....+.++++|+++.|+ +-+..+.|..|++..... .        .....
T Consensus       225 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1erja_         225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  303 (388)
T ss_dssp             TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE-EEETTSEEEEEEC---------------CEEEE
T ss_pred             CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE-EEECCCcEEEEeccCCccccccccccccceeee
Confidence            35667777765444322211       1 12346899999998554 445667899998753211 0        00000


Q ss_pred             eccCCCCCCceEECCCCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEEe
Q 046107          110 IENLPGGPDNINLAPDGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREFN  188 (224)
Q Consensus       110 ~~~~~~~p~~i~~d~dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~  188 (224)
                      ..........+++.++|++.++....                                    +.|..+| ..|+.+..+.
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~d------------------------------------g~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSKD------------------------------------RGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETT------------------------------------SEEEEEETTTCCEEEEEE
T ss_pred             cccccceEEEEEECCCCCEEEEEeCC------------------------------------CEEEEEECCCCcEEEEEe
Confidence            00112245678899999887776655                                    5677777 4588888887


Q ss_pred             CCCCCcccceeEEEEE-------CCEEEEEeCCCCeEEEeeC
Q 046107          189 DPNAKNISFVTSALEF-------QGNLYLASINSNFIGKLPL  223 (224)
Q Consensus       189 ~~~g~~~~~~t~~~~~-------~g~lyv~~~~~~~i~~~~~  223 (224)
                      ...+.    ++.+...       +++++++......|.+.++
T Consensus       348 ~H~~~----V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         348 GHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             CCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCCCC----EEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            65443    4444322       4677777777777776654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.80  E-value=0.014  Score=44.45  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec---CccccceeEEecCCCEEEEEeCC
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE---GLYFANGVALSKHGDFVVVCESW   89 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~---~~~~pngia~~~dg~~Lyv~~~~   89 (224)
                      .+.+++.++|.++++-                 ..+|.+..++...........   .......++++|++++|++ -+.
T Consensus       229 i~~v~~~p~~~~l~s~-----------------s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-g~~  290 (340)
T d1tbga_         229 INAICFFPNGNAFATG-----------------SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYD  290 (340)
T ss_dssp             EEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE-EET
T ss_pred             eEEEEECCCCCEEEEE-----------------eCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEE-EEC
Confidence            4566777777655553                 135667777765444333222   2233468899999985554 455


Q ss_pred             CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           90 KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        90 ~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      .+.|..|++....  ....+. .-.+....+++.++|.+.++....
T Consensus       291 dg~i~iwd~~~~~--~~~~~~-~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         291 DFNCNVWDALKAD--RAGVLA-GHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             TSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEeCCCCEEEEEccC
Confidence            6889999986421  122221 112345788999999877765544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.085  Score=41.71  Aligned_cols=103  Identities=13%  Similarity=-0.008  Sum_probs=59.8

Q ss_pred             ccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEec-------CccccceeEEecCCCEEEE
Q 046107           13 ANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLE-------GLYFANGVALSKHGDFVVV   85 (224)
Q Consensus        13 ~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~-------~~~~pngia~~~dg~~Lyv   85 (224)
                      .+.+++.++|.| ++-                 ..+|.|..+|..+++......       .....+.|+++|||+.|..
T Consensus       187 ~~~v~~s~dg~l-asg-----------------s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s  248 (393)
T d1sq9a_         187 ATSVDISERGLI-ATG-----------------FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  248 (393)
T ss_dssp             CCEEEECTTSEE-EEE-----------------CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             EEEEEECCCCEE-EEE-----------------eCCCcEEEEeecccccccccccccccccccceEEEcccccccceeee
Confidence            456788888744 332                 236778888877665332211       1233478999999996666


Q ss_pred             EeCCC--CeEEEEEccCCCcccceEeec---------cCC---CCCCceEECCCCCEEEEEecC
Q 046107           86 CESWK--FRCIKHWLKLGDKRDREIFIE---------NLP---GGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        86 ~~~~~--~~I~~~~~~~~~~~~~~~~~~---------~~~---~~p~~i~~d~dG~l~va~~~~  135 (224)
                      +...+  +.|..|+++.+..  ...+..         ...   .....+++.+||++.++....
T Consensus       249 gs~D~t~~~i~lwd~~~g~~--~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D  310 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  310 (393)
T ss_dssp             EEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             ecCCCCcceeeeccccccee--eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence            54332  3466677753210  111110         011   124668999999988887766

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.06  E-value=0.033  Score=45.45  Aligned_cols=54  Identities=19%  Similarity=0.201  Sum_probs=38.2

Q ss_pred             CceEEEEeCCCCeEEEEecCc------cccceeEEecCCCEEEEEe--------CCCCeEEEEEccCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGL------YFANGVALSKHGDFVVVCE--------SWKFRCIKHWLKLG  101 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~------~~pngia~~~dg~~Lyv~~--------~~~~~I~~~~~~~~  101 (224)
                      .+.++.++..+++.+.+.+..      ....++.++|||++|.++.        +..+.++.+++.++
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~  102 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC
Confidence            356889999888777665432      2346889999999886653        22357888888753

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.97  E-value=0.27  Score=39.03  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             eEEEEeCCCCeEEEEe-------cCccccceeEE--ecC-CC-EEEEEeCCCCeEEEEEccCC---Ccc--cceEeeccC
Q 046107           50 QLLRYDPSSKQVSIVL-------EGLYFANGVAL--SKH-GD-FVVVCESWKFRCIKHWLKLG---DKR--DREIFIENL  113 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~-------~~~~~pngia~--~~d-g~-~Lyv~~~~~~~I~~~~~~~~---~~~--~~~~~~~~~  113 (224)
                      .+|.+++..+.+..+.       .....+.|+|+  +++ |. ++++++ ..+.+..|.+...   ...  ..+.|  ..
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k~G~v~q~~l~~~~~g~v~~~lvr~f--~~  178 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-KEGEFEQYELNADKNGYISGKKVRAF--KM  178 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSSEEEEEEEEE--EC
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEc-CCceEEEEEEEcCCCCceeeEeeecc--CC
Confidence            4778887655554332       23445789999  554 44 234444 4678887776421   111  12222  24


Q ss_pred             CCCCCceEECCC-CCEEEEEecC
Q 046107          114 PGGPDNINLAPD-GSFWISLIKM  135 (224)
Q Consensus       114 ~~~p~~i~~d~d-G~l~va~~~~  135 (224)
                      +..+.|+++|.+ +.||++....
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~  201 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDE  201 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCccceEEEeCCCCcEEEecCcc
Confidence            567899999987 6799998765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.91  E-value=0.13  Score=41.67  Aligned_cols=86  Identities=8%  Similarity=0.044  Sum_probs=53.1

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC------CCeEEEEEccCCCcccceEeeccCCC---CC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW------KFRCIKHWLKLGDKRDREIFIENLPG---GP  117 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~~---~p  117 (224)
                      +...||.++.+++....+..+.....++ ++.|++.+|++...      ...|++++++|..  ..+.+.....+   .-
T Consensus       342 g~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~--~~~~lt~~~~~~~~~~  418 (470)
T d2bgra1         342 GYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYT--KVTCLSCELNPERCQY  418 (470)
T ss_dssp             SCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTT--CEEESSTTTSTTTBCB
T ss_pred             cCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCC--ceeEecccccCCCCCE
Confidence            4567999998766665555454445555 56667788876542      2359999988632  22222211111   22


Q ss_pred             CceEECCCCCEEEEEecC
Q 046107          118 DNINLAPDGSFWISLIKM  135 (224)
Q Consensus       118 ~~i~~d~dG~l~va~~~~  135 (224)
                      ...++.|||++++....+
T Consensus       419 ~s~~fSpdgky~~~~~s~  436 (470)
T d2bgra1         419 YSVSFSKEAKYYQLRCSG  436 (470)
T ss_dssp             EEEEECTTSSEEEEEECS
T ss_pred             EEEEECCCCCEEEEEecC
Confidence            467899999988876655

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.50  E-value=0.4  Score=37.99  Aligned_cols=68  Identities=12%  Similarity=0.010  Sum_probs=41.3

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec----cCCCCCCceEEC--CC--CCEEEEEecC
Q 046107           67 GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE----NLPGGPDNINLA--PD--GSFWISLIKM  135 (224)
Q Consensus        67 ~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~----~~~~~p~~i~~d--~d--G~l~va~~~~  135 (224)
                      ....+.|++++.+.++|||++-. ..||+|+.+.........+..    .+.+-|.|+++=  ++  |-|.+++.+.
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             CCCccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            34556799999998899999975 579999876321112222211    133467888863  23  3444444443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.15  Score=37.58  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=61.8

Q ss_pred             CceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--CeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           48 HGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWK--FRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        48 ~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      ...++..+.+++....+...........++||++.+++.....  ..|+.++..+.   ..+...  ..+.-....+.||
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~--~~~~~~~p~~SPD  224 (269)
T d2hqsa1         150 RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLS--STFLDETPSLAPN  224 (269)
T ss_dssp             SCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEECC--CSSSCEEEEECTT
T ss_pred             CceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccc---cceEee--cCccccceEECCC
Confidence            3467777776554444443444445678999999886665433  35555655432   222221  1223345689999


Q ss_pred             CC-E-EEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECCCCcEEEEEeCCCC
Q 046107          126 GS-F-WISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSANGSIIREFNDPNA  192 (224)
Q Consensus       126 G~-l-~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~~~g  192 (224)
                      |+ | |.+.....                                   ..+++++.+|+....+....|
T Consensus       225 G~~i~f~s~~~~~-----------------------------------~~l~~~~~dg~~~~~lt~~~g  258 (269)
T d2hqsa1         225 GTMVIYSSSQGMG-----------------------------------SVLNLVSTDGRFKARLPATDG  258 (269)
T ss_dssp             SSEEEEEEEETTE-----------------------------------EEEEEEETTSCCEEECCCSSS
T ss_pred             CCEEEEEEcCCCC-----------------------------------cEEEEEECCCCCEEEEeCCCC
Confidence            98 3 44433321                                   678899999887666654444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.24  Score=40.70  Aligned_cols=60  Identities=8%  Similarity=-0.013  Sum_probs=39.0

Q ss_pred             eEEecCCCEEEEEeCC----CCeEEEEEccCCCcccceEeeccC--CCCCCceEECCCCCEEEEEecC
Q 046107           74 VALSKHGDFVVVCESW----KFRCIKHWLKLGDKRDREIFIENL--PGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        74 ia~~~dg~~Lyv~~~~----~~~I~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ++++++++.||++.+.    ...|++++++|...  .+.+....  ...-....++++|..++-...+
T Consensus       365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCCCCEEEEEECCCCCEEEEEeec
Confidence            4799999999987642    34699999886422  12211111  1123578899999999876665

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.081  Score=39.21  Aligned_cols=78  Identities=17%  Similarity=0.046  Sum_probs=46.5

Q ss_pred             eEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCC
Q 046107           50 QLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESW--KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGS  127 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~  127 (224)
                      .||..|.++.....+.++.......+|||||+.|.++...  ...++.++..+..   .+.+. ...+......++++|.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VRQVA-SFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEEEE-CCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc---eeEEe-eeecccccceecCCCC
Confidence            5888887755555554444444567999999999555432  3467777776532   22222 2233455667777776


Q ss_pred             EEEE
Q 046107          128 FWIS  131 (224)
Q Consensus       128 l~va  131 (224)
                      .++.
T Consensus        96 ~i~~   99 (269)
T d2hqsa1          96 KLAF   99 (269)
T ss_dssp             EEEE
T ss_pred             eeeE
Confidence            4443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.48  Score=34.83  Aligned_cols=62  Identities=18%  Similarity=0.065  Sum_probs=38.9

Q ss_pred             ceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCCCCEEEEEecC
Q 046107           72 NGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+++++++.+.++....+.|..++..+..  ..........+....++++++|.+.++....
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d  183 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPSETYIAAGDVM  183 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccccc--eeeeeeeccCCceeEEEeccCcccccccccc
Confidence            3567788888888888777778888875311  1111111122345788999999876665544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.84  E-value=0.91  Score=37.98  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=26.7

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEe
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLAS  212 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~  212 (224)
                      +.+..+|.+ |+.+-.+..+.+.. ..+.+ -..+|+-||+-
T Consensus       479 g~l~A~Da~tGe~LW~~~l~~~~~-~~P~t-y~~dGkqyv~v  518 (560)
T d1kv9a2         479 GQMHAYSADKGEALWQFEAQSGIV-AAPMT-FELAGRQYVAI  518 (560)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCC-SCCEE-EEETTEEEEEE
T ss_pred             CcEEEEECCCCcEeEEEECCCCcc-ccCEE-EEECCEEEEEE
Confidence            578899965 99999998876542 22222 24688888764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.51  Score=34.91  Aligned_cols=136  Identities=13%  Similarity=0.043  Sum_probs=71.4

Q ss_pred             CCceEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEG-LYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~-~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .+|.|..+|...++....... ...-..+  +++++ ++++-+..+.|..|+.....  ....+.......-.-.++..+
T Consensus       195 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         195 LDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDN-ILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN  269 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCCSCEEEE--EEETT-EEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEEC
T ss_pred             CCCeEEEeecccceeeeEecccccceeEE--ecCCC-EEEEEcCCCEEEEEeccccc--ccccccccceeeeceeecccC
Confidence            467777777765544333222 2222344  44556 45555567899999986421  122222111111223344456


Q ss_pred             CCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEECC-CCcEEEEEeCC-CCCcccceeEEEE
Q 046107          126 GSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVSA-NGSIIREFNDP-NAKNISFVTSALE  203 (224)
Q Consensus       126 G~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~~-~g~~~~~~t~~~~  203 (224)
                      ++++++....                                    +.|...|. .|+.+..+... .+..-..++.+..
T Consensus       270 ~~~~~s~s~D------------------------------------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         270 KNFVITSSDD------------------------------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  313 (342)
T ss_dssp             SSEEEEEETT------------------------------------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             CCeeEEEcCC------------------------------------CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence            6777776655                                    57777874 58888776432 2211234666666


Q ss_pred             ECCEEEEEeCC-C----CeEEEeeC
Q 046107          204 FQGNLYLASIN-S----NFIGKLPL  223 (224)
Q Consensus       204 ~~g~lyv~~~~-~----~~i~~~~~  223 (224)
                      ..+..++++.. +    -+|.+.++
T Consensus       314 s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            65555544432 2    25666654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.44  Score=37.30  Aligned_cols=63  Identities=16%  Similarity=0.135  Sum_probs=40.2

Q ss_pred             cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeec--cC---CCCCCceEECCCCCEEEEEecC
Q 046107           69 YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIE--NL---PGGPDNINLAPDGSFWISLIKM  135 (224)
Q Consensus        69 ~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~---~~~p~~i~~d~dG~l~va~~~~  135 (224)
                      ...+.++++||+  ++++-+..+.|..|++....  ....+..  ..   ......+++.|+|++.++....
T Consensus       185 ~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~--~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D  252 (393)
T d1sq9a_         185 QFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS  252 (393)
T ss_dssp             CCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             CcEEEEEECCCC--EEEEEeCCCcEEEEeecccc--cccccccccccccccceEEEcccccccceeeeecCC
Confidence            335679999997  44566678899999986421  1111110  11   1234778999999988887655

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.54  E-value=0.59  Score=34.41  Aligned_cols=79  Identities=16%  Similarity=0.049  Sum_probs=50.1

Q ss_pred             eeccccccccceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEe--CCCCeEEEE--ecCccccceeEEecCC
Q 046107            5 HLCHLIRFANDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYD--PSSKQVSIV--LEGLYFANGVALSKHG   80 (224)
Q Consensus         5 ~~~~~~~~~n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~--~~~g~~~~~--~~~~~~pngia~~~dg   80 (224)
                      +++.+=...++|++.|+|++.++-.                 .+|.|..+|  ......+..  .........++|++++
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s-----------------~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~   68 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITS-----------------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT   68 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEE-----------------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEE-----------------CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC
Confidence            3466666778999999998777642                 245554444  332222222  1222334689999987


Q ss_pred             CEEEEEeCCCCeEEEEEccC
Q 046107           81 DFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        81 ~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      ..++++-...+.|..++...
T Consensus        69 ~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_          69 DLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSS
T ss_pred             CCEEEEcccccceeeeeccc
Confidence            66777766778899888764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.80  E-value=0.39  Score=35.49  Aligned_cols=63  Identities=6%  Similarity=-0.003  Sum_probs=35.9

Q ss_pred             ccceeEEecCCCEEEEEeCCCCeEEEEEccCCC-cccceEeeccCCCCCCceEECCCCC-EEEEEec
Q 046107           70 FANGVALSKHGDFVVVCESWKFRCIKHWLKLGD-KRDREIFIENLPGGPDNINLAPDGS-FWISLIK  134 (224)
Q Consensus        70 ~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~dG~-l~va~~~  134 (224)
                      .-+.|+|+||+++|..+ +..+.|..|+++... ........ ...+....+++.+++. +.++...
T Consensus        13 ~I~~l~fsp~~~~L~s~-s~Dg~v~iwd~~~~~~~~~~~~~~-~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLIT-SWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             CEEEEEEEGGGTEEEEE-ETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEET
T ss_pred             CEEEEEEeCCCCEEEEE-ECCCeEEEEEccCCCcceEEEEec-CCCCCEEEEEEeCCCCCEEEEccc
Confidence            44789999999966555 467889989886421 11111111 1122346778876654 4444333

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.73  E-value=0.91  Score=33.62  Aligned_cols=128  Identities=11%  Similarity=-0.008  Sum_probs=69.4

Q ss_pred             CCceEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCce-EECC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGL-YFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNI-NLAP  124 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~-~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i-~~d~  124 (224)
                      .++.|..++..++.......+. ...+.++++  ++ .+++-...+.|..+++....    +.+... ......+ ++.+
T Consensus       221 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~----~~~~~~-~~~~~~~~~~~~  292 (355)
T d1nexb2         221 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DK-FLVSAAADGSIRGWDANDYS----RKFSYH-HTNLSAITTFYV  292 (355)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SS-EEEEECTTSEEEEEETTTCC----EEEEEE-CTTCCCCCEEEE
T ss_pred             ccceEEeeeccccccccccccccccccccccc--cc-eeeeeecccccccccccccc----eecccc-cCCceEEEEEcC
Confidence            3566777776655544333332 233566665  45 44555677899999986421    222211 1223333 4456


Q ss_pred             CCCEEEEEecCCchhhhhhccChhHHHHHhhchhhHHhhhhcCCCceEEEEEEC-CCCcEEEEE-eCCCCCcccceeEEE
Q 046107          125 DGSFWISLIKMNSSAVETVHSSKNRKQLLEEHPELINQLMSTGKGAAAKVVKVS-ANGSIIREF-NDPNAKNISFVTSAL  202 (224)
Q Consensus       125 dG~l~va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~~~~-~~~~g~~~~~~t~~~  202 (224)
                      ++++.++...                                     +.|...| ..|+.+... ..+.    ..++.+.
T Consensus       293 ~~~~l~~g~d-------------------------------------~~i~vwd~~tg~~~~~~~~~~~----~~V~~v~  331 (355)
T d1nexb2         293 SDNILVSGSE-------------------------------------NQFNIYNLRSGKLVHANILKDA----DQIWSVN  331 (355)
T ss_dssp             CSSEEEEEET-------------------------------------TEEEEEETTTCCBCCSCTTTTC----SEEEEEE
T ss_pred             CCCEEEEEeC-------------------------------------CEEEEEECCCCCEEEEEecCCC----CCEEEEE
Confidence            7777776543                                     3566677 357766432 2121    2466667


Q ss_pred             EECCEEEEEeCCCCe--EEEeeC
Q 046107          203 EFQGNLYLASINSNF--IGKLPL  223 (224)
Q Consensus       203 ~~~g~lyv~~~~~~~--i~~~~~  223 (224)
                      .+++++.++......  |.+++.
T Consensus       332 ~~~~~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         332 FKGKTLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             EETTEEEEEEESSSCEEEEEEEC
T ss_pred             EcCCeEEEEEECCCcEEEEEEeC
Confidence            777777766554443  555543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.07  E-value=2.1  Score=35.81  Aligned_cols=51  Identities=18%  Similarity=0.160  Sum_probs=36.3

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeC----------------------CCCeEEEeeCC
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASI----------------------NSNFIGKLPLK  224 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~----------------------~~~~i~~~~~~  224 (224)
                      +.+..+|.+ ||.+-.+..+.+..-..+|.  ..+|+-||+-.                      .++.|.+|.||
T Consensus       507 g~l~A~Da~TGe~LW~~~~~~~~~~~P~ty--~~~G~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g~~l~vF~Lp  580 (582)
T d1flga_         507 GYFKAFDAKSGKELWKFQTGSGIVSPPITW--EQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLP  580 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECC
T ss_pred             CeEEEEECCCCcEeEEEECCCCccccCEEE--EECCEEEEEEEeCCCCccccccccccccccccCCCCEEEEEeCC
Confidence            578899975 99999998876642223322  47888887632                      36789999887

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.78  E-value=0.19  Score=36.99  Aligned_cols=53  Identities=11%  Similarity=-0.061  Sum_probs=37.7

Q ss_pred             CCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGD  102 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~  102 (224)
                      ....||.++.++++.+++... .......++|||+.|++..  .+.|+.+++++++
T Consensus       212 ~~~~l~~~d~~g~~~~~lt~~-~~~~~~~~SpDG~~I~f~~--~~~l~~~d~~~g~  264 (281)
T d1k32a2         212 GFGQIYSTDLDGKDLRKHTSF-TDYYPRHLNTDGRRILFSK--GGSIYIFNPDTEK  264 (281)
T ss_dssp             SSCEEEEEETTSCSCEECCCC-CSSCEEEEEESSSCEEEEE--TTEEEEECTTTCC
T ss_pred             cccceEEEeCCCCceEEeecC-CCcccccCcCCCCEEEEEe--CCEEEEEECCCCC
Confidence            456799999987766665432 2223457899999888865  4689999998643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=2.3  Score=34.37  Aligned_cols=73  Identities=12%  Similarity=-0.026  Sum_probs=43.2

Q ss_pred             cceEEecCCcEEEEeCCCCCCcchhhhhhccCCCCceEEEEeCCCCeEEEEecCc--c----ccceeEEecCCCEEE---
Q 046107           14 NDVIEASDGSLYITVSSTKFAPKAYYLDLVEGEPHGQLLRYDPSSKQVSIVLEGL--Y----FANGVALSKHGDFVV---   84 (224)
Q Consensus        14 n~v~~~~~G~ly~t~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~g~~~~~~~~~--~----~pngia~~~dg~~Ly---   84 (224)
                      ..+...+++++++....+             ......++.+|.++|+++.+....  .    ......+++||+.++   
T Consensus       258 ~~~~W~~d~~~~~~~~nR-------------~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~  324 (465)
T d1xfda1         258 TMVKWATSTKVAVTWLNR-------------AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR  324 (465)
T ss_dssp             EEEEESSSSEEEEEEEET-------------TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred             eeeEEcCCCeEEEEEEcc-------------ccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEE
Confidence            345556677766654321             123456888999888777654211  1    123578999998443   


Q ss_pred             EEe-CCCCeEEEEEcc
Q 046107           85 VCE-SWKFRCIKHWLK   99 (224)
Q Consensus        85 v~~-~~~~~I~~~~~~   99 (224)
                      .++ ...+.++++...
T Consensus       325 ~se~~g~~~ly~~~~~  340 (465)
T d1xfda1         325 AIPQGGRGKFYHITVS  340 (465)
T ss_dssp             EECCSSSSCEEEEEEE
T ss_pred             eeeecccCceEEEEec
Confidence            333 344678887754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.02  E-value=2.9  Score=34.88  Aligned_cols=39  Identities=23%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEe
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLAS  212 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~  212 (224)
                      +.+..+|++ |+.+..+..+.+..-+.+|.  ..+|+.||+-
T Consensus       485 g~l~A~Da~tGe~lW~~~l~~~~~a~P~ty--~~dGkqYi~v  524 (571)
T d2ad6a1         485 GYLKALDNKDGKELWNFKMPSGGIGSPMTY--SFKGKQYIGS  524 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEECCCCceecceEE--EECCEEEEEE
Confidence            578889975 99999998876543333333  3588999854

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=91.67  E-value=0.99  Score=32.61  Aligned_cols=58  Identities=5%  Similarity=-0.106  Sum_probs=35.4

Q ss_pred             ceeEEecCCCEEEEEeCCCCeEEEEEcc-CCC---cccceEeeccCCCCCCceEECCCCCEEEEE
Q 046107           72 NGVALSKHGDFVVVCESWKFRCIKHWLK-LGD---KRDREIFIENLPGGPDNINLAPDGSFWISL  132 (224)
Q Consensus        72 ngia~~~dg~~Lyv~~~~~~~I~~~~~~-~~~---~~~~~~~~~~~~~~p~~i~~d~dG~l~va~  132 (224)
                      .-|-++|+|. ||.....  +|++-.+- +..   +...+.+....-..+..+.+.++|+||-..
T Consensus       137 ~~lFFdP~G~-LYaV~~~--~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         137 KFLFFHPNGY-LYAVHGQ--QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             EEEEECTTSC-EEEEETT--EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             eEEEECCCce-EEEEECC--cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEe
Confidence            3677999996 9988543  56665542 210   111222221222356789999999999884

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.60  E-value=3.2  Score=34.54  Aligned_cols=40  Identities=18%  Similarity=0.168  Sum_probs=27.0

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEeC
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLASI  213 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~~  213 (224)
                      +.+..+|.+ |+.+..+..+.+..-+.+|.  ..+|+.||+-.
T Consensus       498 g~l~A~Da~TGe~LW~~~~~~~~~~~P~ty--~~~GkQYv~v~  538 (573)
T d1kb0a2         498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTY--MVDGRQYVSVA  538 (573)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEE
T ss_pred             CeEEEEECCCCcEeEEEECCCCccccCEEE--EECCEEEEEEE
Confidence            578889965 99999998876642222332  35788887543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.33  E-value=1.2  Score=34.36  Aligned_cols=77  Identities=12%  Similarity=0.024  Sum_probs=38.0

Q ss_pred             CCeEEEEecCccccceeEEe-cCCCEEEEEeCC-----------CCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           58 SKQVSIVLEGLYFANGVALS-KHGDFVVVCESW-----------KFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        58 ~g~~~~~~~~~~~pngia~~-~dg~~Lyv~~~~-----------~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .|+++....-...+...++- .||+ |||--..           ...+..|++....-..............-+.++..+
T Consensus         8 ~g~W~~~~~~p~~~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~   86 (387)
T d1k3ia3           8 LGRWGPTIDLPIVPAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN   86 (387)
T ss_dssp             SCEEEEEEECSSCCSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT
T ss_pred             CCccCCcCCCCccccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC
Confidence            45555544333334444444 4665 7664221           114667888643211111111001112346788899


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      |.+|+.....
T Consensus        87 g~i~v~Gg~~   96 (387)
T d1k3ia3          87 GQIVVTGGND   96 (387)
T ss_dssp             SCEEEECSSS
T ss_pred             CcEEEeecCC
Confidence            9999986554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.98  E-value=2.6  Score=32.32  Aligned_cols=82  Identities=16%  Similarity=0.038  Sum_probs=50.1

Q ss_pred             eEEEEeCCCCeEEEEe---c-CccccceeEEecCCCEEEEEe-CCCCeEEEEEccCCCcccceEeeccC-CCCCCceEEC
Q 046107           50 QLLRYDPSSKQVSIVL---E-GLYFANGVALSKHGDFVVVCE-SWKFRCIKHWLKLGDKRDREIFIENL-PGGPDNINLA  123 (224)
Q Consensus        50 ~l~~~~~~~g~~~~~~---~-~~~~pngia~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d  123 (224)
                      .+..+|+.+++++...   . ...+..+.++.+||+ +|+.- .....+.+|++...   ......... +..--..++-
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~---~w~~~~~~~~~r~~~~~~~~  128 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD---SWIPGPDMQVARGYQSSATM  128 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT---EEEECCCCSSCCSSCEEEEC
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccC---cccccccccccccccceeee
Confidence            4678999877765432   1 122334788999997 66654 45578999998642   122221111 1122357777


Q ss_pred             CCCCEEEEEecC
Q 046107          124 PDGSFWISLIKM  135 (224)
Q Consensus       124 ~dG~l~va~~~~  135 (224)
                      .||.+|+.....
T Consensus       129 ~dG~v~v~GG~~  140 (387)
T d1k3ia3         129 SDGRVFTIGGSW  140 (387)
T ss_dssp             TTSCEEEECCCC
T ss_pred             cCCceeeecccc
Confidence            899999987654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.27  E-value=3.9  Score=29.45  Aligned_cols=29  Identities=7%  Similarity=0.037  Sum_probs=22.8

Q ss_pred             cceeEEecCCCEEEEEeCCCCeEEEEEccC
Q 046107           71 ANGVALSKHGDFVVVCESWKFRCIKHWLKL  100 (224)
Q Consensus        71 pngia~~~dg~~Lyv~~~~~~~I~~~~~~~  100 (224)
                      ...++++||+++|+++. ..+.|..|+...
T Consensus       165 v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~  193 (287)
T d1pgua2         165 PSYISISPSETYIAAGD-VMGKILLYDLQS  193 (287)
T ss_dssp             EEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             eeEEEeccCcccccccc-ccccccceeecc
Confidence            46899999999766665 567899998864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.04  E-value=4.8  Score=29.29  Aligned_cols=83  Identities=11%  Similarity=0.015  Sum_probs=46.1

Q ss_pred             CCceEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCCCCCCceEECCC
Q 046107           47 PHGQLLRYDPSSKQVSIVLE-GLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLPGGPDNINLAPD  125 (224)
Q Consensus        47 ~~g~l~~~~~~~g~~~~~~~-~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~d  125 (224)
                      .++.+..+|..+++...... .......+.++++++.++++ ...+.|..++.....  ....+ .........++++  
T Consensus       179 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~--~~~~~-~~h~~~v~~~~~~--  252 (355)
T d1nexb2         179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLENGE--LMYTL-QGHTALVGLLRLS--  252 (355)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTTCC--EEEEE-CCCSSCCCEEEEC--
T ss_pred             ccceeeeeecccccceeeeeccccccccccccccceeeecc-cccceEEeeeccccc--ccccc-ccccccccccccc--
Confidence            35667777776555443333 33445688999999855554 456788888876421  11111 1112234556664  


Q ss_pred             CCEEEEEecC
Q 046107          126 GSFWISLIKM  135 (224)
Q Consensus       126 G~l~va~~~~  135 (224)
                      ++++++....
T Consensus       253 ~~~l~~~~~d  262 (355)
T d1nexb2         253 DKFLVSAAAD  262 (355)
T ss_dssp             SSEEEEECTT
T ss_pred             cceeeeeecc
Confidence            4555554444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.90  E-value=8.2  Score=32.15  Aligned_cols=52  Identities=13%  Similarity=0.258  Sum_probs=33.0

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCccccee-EEEEECCEEEEEeCC-----CCeEEEeeC
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVT-SALEFQGNLYLASIN-----SNFIGKLPL  223 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t-~~~~~~g~lyv~~~~-----~~~i~~~~~  223 (224)
                      +.|+.+|++ |+++..+...+......+| .....++.+|+++..     ...|.-+++
T Consensus       131 g~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da  189 (596)
T d1w6sa_         131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDV  189 (596)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEET
T ss_pred             CCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEEC
Confidence            478999976 9998887543222111222 335689999999864     356666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.77  E-value=12  Score=31.12  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=27.3

Q ss_pred             EEEEEECCC-CcEEEEEeCCCCCcccceeEEEEECCEEEEEe
Q 046107          172 AKVVKVSAN-GSIIREFNDPNAKNISFVTSALEFQGNLYLAS  212 (224)
Q Consensus       172 ~~v~~~~~~-G~~~~~~~~~~g~~~~~~t~~~~~~g~lyv~~  212 (224)
                      +.+..+|.+ |+.+-.+..+.+..-+.+|.  ..+|+=||+-
T Consensus       494 g~l~A~Da~TGe~LW~~~~~~~~~a~P~tY--~~dGkQYvav  533 (596)
T d1w6sa_         494 GYLKARDSDTGDLLWKFKIPSGAIGYPMTY--THKGTQYVAI  533 (596)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEE
T ss_pred             CeEEEEECCCCcEeeEEECCCCcccCCeEE--EECCEEEEEE
Confidence            678899965 99999998876653333433  2578877763

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.13  E-value=12  Score=30.79  Aligned_cols=83  Identities=22%  Similarity=0.331  Sum_probs=48.9

Q ss_pred             CCCceEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCeEEEEEccCCCcccceEeeccCC----CCCCceE
Q 046107           46 EPHGQLLRYDPSSKQVSIVLEGLYFANGVALSKHGDFVVVCESWKFRCIKHWLKLGDKRDREIFIENLP----GGPDNIN  121 (224)
Q Consensus        46 ~~~g~l~~~~~~~g~~~~~~~~~~~pngia~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~----~~p~~i~  121 (224)
                      .+.|.|.-+|+.+|+...........+|=+++-+|..||+. +..+.++.||.+.++    .+|--..+    +.|  |.
T Consensus       454 ~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G-~~dg~l~A~Da~TGe----~LW~~~~~~~~~~~P--~t  526 (573)
T d1kb0a2         454 KPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGE----KLWEAPTGTGVVAAP--ST  526 (573)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCC----EEEEEECSSCCCSCC--EE
T ss_pred             CCcccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEE-CCCCeEEEEECCCCc----EeEEEECCCCccccC--EE
Confidence            34678999999988765433222222333344456656654 467899999987432    23321222    234  54


Q ss_pred             ECCCCCEEEEEecC
Q 046107          122 LAPDGSFWISLIKM  135 (224)
Q Consensus       122 ~d~dG~l~va~~~~  135 (224)
                      .-.||+-||+...+
T Consensus       527 y~~~GkQYv~v~~G  540 (573)
T d1kb0a2         527 YMVDGRQYVSVAVG  540 (573)
T ss_dssp             EEETTEEEEEEEEC
T ss_pred             EEECCEEEEEEEeC
Confidence            45689988877655