Citrus Sinensis ID: 046120

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MSAVSETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANWSDNDNDDENNEEVMDEDQDEQMVASDDDAEVHGDTNFPHAYFFMRYMCDRDNCWGTLAPLPPSDATPSTVMECNVCGNLKNDAIGREDTVGMDD
cccccccEEEEEEcccccEEEEccccccccEEEEEccEEEEEcccccccccccHHHcccccccccccccccccEEcccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHccEEEEEcccccccccccccEEEEEEccccccccccccccEEEcccccccccccEEEEEEccccccccEEEEccccccccHHHHHHHHHccccEEEEccccccccccccccccccccHHHccHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccEEcccccccccccccccccccccc
cccccccEEEEEccccccEEEEEcccccccEEEEcccEEEccccccccccccEHHHcccccccccccccccccccccHHHHHccccHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccEEEcccccccccccccEEEEEEEccHHHHccccccccEEEcccccccccccEEEEEEEEEcccccEEEEEEcHHcccHHHHHHHHHHcccEEEEccccEEEEccccccccccccHHHcccccccccHHcccccccccccccccEEEEEEEEccccccccccccccccccccccEEEEccccccccccccccccccccc
MSAVSETVTVAEIegrgrglvstqslkagqivlrdspillysalpfinsssfchncfrktmhssssicpscsvafcspkcstaaassshspYVCQALTRLlnlnspdaanlplDRQLQARFLIAAYNLAVVNPSQFQILLAFQgtvtdndtsaahylsslcpppastTIELTAALLAKDRLNafglmepyiegqdgrrsVRAYGIYLKAsffnhdclpnacrfdyvdaaaenNTDIIVRMIHdvpqgreiclsyfpvnydystrqkrllydydfacdcdrckveanwsdndnddenneevmdedqdeqmvasdddaevhgdtnfphaYFFMRYMcdrdncwgtlaplppsdatpstvmecnvcgnlkndaigredtvgmdd
msavsetvtvaeiegrgrglvstqslkaGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEpyiegqdgrrSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEanwsdndnddenNEEVMDEDQDEQMVASDDDAEVHGDTNFPHAYFFMRYMCDRDNCWGTLAPLPPSDATPSTVMECNVCGnlkndaigredtvgmdd
MSAVSETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHssssicpscsVAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANWSdndnddenneevmdedqdeqmvASDDDAEVHGDTNFPHAYFFMRYMCDRDNCWGTLAPLPPSDATPSTVMECNVCGNLKNDAIGREDTVGMDD
*****************RGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVAFCSPKCSTAA****HSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANW*********************************DTNFPHAYFFMRYMCDRDNCWGTLAPLP*******TVMECNVCGNLK**************
*****ETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKV***************************************NFPHAYFFMRYMCDRDNCWGTLAPLPPSDATPSTVMECNVCGNL***************
*********VAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVAFCSP************PYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANWSDNDND**********************AEVHGDTNFPHAYFFMRYMCDRDNCWGTLAPLPPSDATPSTVMECNVCGNLKNDAIGREDTVGMDD
*****ETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANWS*********************************TNFPHAYFFMRYMCDRDNCWGTLAPLPPSDATPSTVMECNVCGNLK**************
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MSAVSETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANWSDNDNDDENNEEVMDEDQDEQMVASDDDAEVHGDTNFPHAYFFMRYMCDRDNCWGTLAPLPPSDATPSTVMECNVCGNLKNDAIGREDTVGMDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
Q9ZUM9398 Histone-lysine N-methyltr yes no 0.942 0.902 0.552 1e-115
Q8NB12 490 SET and MYND domain-conta yes no 0.690 0.536 0.239 4e-10
Q6C9E7438 Potential protein lysine yes no 0.674 0.586 0.236 2e-09
P97443 490 SET and MYND domain-conta yes no 0.690 0.536 0.229 3e-09
Q54DL6521 SET and MYND domain-conta no no 0.251 0.184 0.342 5e-08
Q6FTT0515 Potential protein lysine yes no 0.664 0.491 0.228 6e-08
P0CR43449 Potential protein lysine N/A no 0.236 0.200 0.336 7e-08
Q9H7B4428 Histone-lysine N-methyltr no no 0.664 0.591 0.239 7e-08
P0CR42449 Potential protein lysine yes no 0.236 0.200 0.326 1e-07
Q9FG08325 Histone-lysine N-methyltr no no 0.283 0.332 0.303 2e-07
>sp|Q9ZUM9|ASHR2_ARATH Histone-lysine N-methyltransferase ASHR2 OS=Arabidopsis thaliana GN=ASHR2 PE=2 SV=3 Back     alignment and function desciption
 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/389 (55%), Positives = 287/389 (73%), Gaps = 30/389 (7%)

Query: 8   VTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSS--SFCHNCFRKTMHSSS 65
           + VAEI GRGR LV+ QSL+AGQ++LR+SP+LLYSA PF++SS   +C +CFR    S+ 
Sbjct: 13  LRVAEIGGRGRSLVAAQSLRAGQVILRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAH 72

Query: 66  SICPSCS-VAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIA 124
             C SCS V+FCSP C      +SH+P++C++L RL   +S   ++ P DRQ+QARFL++
Sbjct: 73  QKCQSCSLVSFCSPNCF-----ASHTPWLCESLRRLHQSSSSAFSDQPSDRQVQARFLLS 127

Query: 125 AYNLAVVNPSQFQILLAFQGTVTDN--------DTSAAHYL----SSLCPP-PASTTIEL 171
           AYNLA  +PS FQILL+ QG+ + N        D++AA +L    SS+CP  P S + +L
Sbjct: 128 AYNLAAASPSDFQILLSLQGSGSSNGDPSCSAGDSAAAGFLHSLLSSVCPSLPVSISPDL 187

Query: 172 TAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAE 231
           TAALL+KD++NAFGLMEP     + +RSVRAYGIY K SFFNHDCLPNACRFDYVD+A++
Sbjct: 188 TAALLSKDKVNAFGLMEP-CSVSNEKRSVRAYGIYPKTSFFNHDCLPNACRFDYVDSASD 246

Query: 232 NNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANWSDND 291
            NTDII+RMIHDVP+GRE+CLSYFPVN +YS+RQKRLL DY F CDCDRCKVE +WS+ +
Sbjct: 247 GNTDIIIRMIHDVPEGREVCLSYFPVNMNYSSRQKRLLEDYGFKCDCDRCKVEFSWSEGE 306

Query: 292 NDDENNEEVMDEDQDEQMV---ASDDDAEVHG-----DTNFPHAYFFMRYMCDRDNCWGT 343
            D+    E M++  +++ +     +++ EV G     ++NFPHAYFF+RYMC+++NC+GT
Sbjct: 307 EDENEIMEEMEDQDEQEEMEDSVGENEEEVCGNGVDDESNFPHAYFFVRYMCEKENCFGT 366

Query: 344 LAPLPPSDATPSTVMECNVCGNLKNDAIG 372
           LAPLPP     S V+ECNVCG++K D +G
Sbjct: 367 LAPLPPKTHDASRVLECNVCGSVKEDEVG 395
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q8NB12|SMYD1_HUMAN SET and MYND domain-containing protein 1 OS=Homo sapiens GN=SMYD1 PE=2 SV=1 Back     alignment and function description
>sp|Q6C9E7|SET5_YARLI Potential protein lysine methyltransferase SET5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SET5 PE=3 SV=1 Back     alignment and function description
>sp|P97443|SMYD1_MOUSE SET and MYND domain-containing protein 1 OS=Mus musculus GN=Smyd1 PE=1 SV=3 Back     alignment and function description
>sp|Q54DL6|Y2140_DICDI SET and MYND domain-containing protein DDB_G0292140 OS=Dictyostelium discoideum GN=DDB_G0292140 PE=3 SV=1 Back     alignment and function description
>sp|Q6FTT0|SET5_CANGA Potential protein lysine methyltransferase SET5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SET5 PE=3 SV=1 Back     alignment and function description
>sp|P0CR43|SET5_CRYNB Potential protein lysine methyltransferase SET5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SET5 PE=3 SV=1 Back     alignment and function description
>sp|Q9H7B4|SMYD3_HUMAN Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4 Back     alignment and function description
>sp|P0CR42|SET5_CRYNJ Potential protein lysine methyltransferase SET5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SET5 PE=3 SV=1 Back     alignment and function description
>sp|Q9FG08|ATXR4_ARATH Histone-lysine N-methyltransferase ATXR4 OS=Arabidopsis thaliana GN=ATXR4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
224057872391 SET domain protein [Populus trichocarpa] 0.950 0.925 0.623 1e-124
356525020419 PREDICTED: histone-lysine N-methyltransf 0.992 0.902 0.571 1e-119
225425346405 PREDICTED: histone-lysine N-methyltransf 0.984 0.925 0.594 1e-119
147844297405 hypothetical protein VITISV_031337 [Viti 0.984 0.925 0.594 1e-119
30680748398 histone-lysine N-methyltransferase ASHR2 0.942 0.902 0.552 1e-113
255543292379 protein with unknown function [Ricinus c 0.910 0.915 0.599 1e-111
297836294424 hypothetical protein ARALYDRAFT_343234 [ 0.905 0.813 0.552 1e-106
357484667384 Histone-lysine N-methyltransferase ASHR2 0.889 0.882 0.476 3e-93
18399103341 histone-lysine N-methyltransferase ASHR2 0.727 0.812 0.588 3e-92
440583731357 similar to histone-lysine N-methyltransf 0.876 0.935 0.467 1e-84
>gi|224057872|ref|XP_002299366.1| SET domain protein [Populus trichocarpa] gi|222846624|gb|EEE84171.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/382 (62%), Positives = 281/382 (73%), Gaps = 20/382 (5%)

Query: 8   VTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSS----FCHNCFRKTMHS 63
           V V EI+GRGRGLVSTQ L+ GQIVL DSPILLYSALP          +C  CF KT+ S
Sbjct: 11  VRVEEIQGRGRGLVSTQPLRGGQIVLIDSPILLYSALPLTKQQHSTFLYCDKCF-KTIQS 69

Query: 64  SSSICPSCS-VAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFL 122
           +S  CP+CS   FCSP C +AA +SSH+P+VCQ+L+RL +       +  ++RQ+QA+FL
Sbjct: 70  ASVSCPTCSHQRFCSPTCLSAALASSHTPWVCQSLSRLRDCQD-FLQHHSVERQIQAQFL 128

Query: 123 IAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYL----SSLCPPPA----STTIELTAA 174
           +AAYNLA V+PS FQILL+ QG   D D +    L    SSLCPPP     S ++EL AA
Sbjct: 129 VAAYNLAFVSPSDFQILLSLQGRAEDEDPAIVQSLHSVISSLCPPPPIEGFSFSLELIAA 188

Query: 175 LLAKDRLNAFGLMEPYI--EGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAEN 232
           L+AKDR NAFGLMEP    E   G+RSVRAYGIY KAS FNHDCLPNACRFDYVD     
Sbjct: 189 LVAKDRFNAFGLMEPLNLNEENGGQRSVRAYGIYPKASLFNHDCLPNACRFDYVDTNNSG 248

Query: 233 NTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANWS-DND 291
           NTDI+VRMIHDVPQGREICLSYFPVN +YSTR+KRLL DY F CDCDRCKVEA WS D  
Sbjct: 249 NTDIVVRMIHDVPQGREICLSYFPVNSNYSTRRKRLLEDYGFTCDCDRCKVEATWSDDEG 308

Query: 292 NDDENNEEVMDEDQDEQMVASDDDAEVHGD--TNFPHAYFFMRYMCDRDNCWGTLAPLPP 349
           + D+N+ EVM+ED DE M A  D  E+  D  T+FPHAYFF+RYMC+R+NCWGTLAP PP
Sbjct: 309 DGDDNDNEVMEEDVDEPMEAESDGEEIGNDNSTDFPHAYFFLRYMCNRNNCWGTLAPFPP 368

Query: 350 SDATPSTVMECNVCGNLKNDAI 371
           SDA PS ++ECN CG++KND +
Sbjct: 369 SDAKPSNLLECNACGDIKNDEV 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356525020|ref|XP_003531125.1| PREDICTED: histone-lysine N-methyltransferase ASHR2-like [Glycine max] Back     alignment and taxonomy information
>gi|225425346|ref|XP_002275154.1| PREDICTED: histone-lysine N-methyltransferase ASHR2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147844297|emb|CAN82112.1| hypothetical protein VITISV_031337 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30680748|ref|NP_849991.1| histone-lysine N-methyltransferase ASHR2 [Arabidopsis thaliana] gi|94707155|sp|Q9ZUM9.3|ASHR2_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR2; AltName: Full=ASH1-related protein 2; AltName: Full=Protein SET DOMAIN GROUP 39 gi|28393236|gb|AAO42047.1| putative SET-domain transcriptional regulator [Arabidopsis thaliana] gi|330251813|gb|AEC06907.1| histone-lysine N-methyltransferase ASHR2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255543292|ref|XP_002512709.1| protein with unknown function [Ricinus communis] gi|223548670|gb|EEF50161.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|297836294|ref|XP_002886029.1| hypothetical protein ARALYDRAFT_343234 [Arabidopsis lyrata subsp. lyrata] gi|297331869|gb|EFH62288.1| hypothetical protein ARALYDRAFT_343234 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357484667|ref|XP_003612621.1| Histone-lysine N-methyltransferase ASHR2 [Medicago truncatula] gi|355513956|gb|AES95579.1| Histone-lysine N-methyltransferase ASHR2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|18399103|ref|NP_565457.1| histone-lysine N-methyltransferase ASHR2 [Arabidopsis thaliana] gi|14334524|gb|AAK59459.1| putative SET-domain transcriptional regulator protein [Arabidopsis thaliana] gi|17979109|gb|AAL47498.1| putative SET-domain transcriptional regulator protein [Arabidopsis thaliana] gi|20197479|gb|AAD10162.2| putative SET-domain transcriptional regulator [Arabidopsis thaliana] gi|330251812|gb|AEC06906.1| histone-lysine N-methyltransferase ASHR2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|440583731|emb|CCH47233.1| similar to histone-lysine N-methyltransferase ASHR2 [Lupinus angustifolius] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2050434398 ASHR2 "AT2G19640" [Arabidopsis 0.955 0.914 0.531 1.4e-103
TAIR|locus:2144138325 SDG38 "AT5G06620" [Arabidopsis 0.293 0.344 0.312 2.5e-10
FB|FBgn0036282663 Smyd4 "SET and MYND domain pro 0.244 0.140 0.268 4.1e-10
DICTYBASE|DDB_G0292140521 DDB_G0292140 "SET domain-conta 0.259 0.190 0.324 2.1e-09
CGD|CAL0000436379 orf19.3665 [Candida albicans ( 0.309 0.311 0.291 3.1e-09
UNIPROTKB|Q59VZ3379 SET6 "Potential protein lysine 0.309 0.311 0.291 3.1e-09
UNIPROTKB|E9PHG3 477 SMYD1 "SET and MYND domain-con 0.669 0.534 0.240 1.8e-08
FB|FBgn0038869393 CG3353 [Drosophila melanogaste 0.202 0.195 0.344 2e-08
UNIPROTKB|Q5ZIZ2420 SMYD5 "SET and MYND domain-con 0.288 0.261 0.311 2.2e-08
ZFIN|ZDB-GENE-060522-1 486 smyd1b "SET and MYND domain co 0.679 0.532 0.227 3.2e-08
TAIR|locus:2050434 ASHR2 "AT2G19640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 210/395 (53%), Positives = 272/395 (68%)

Query:     3 AVSETVT-VAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSS--SFCHNCFRK 59
             A  ET+  VAEI GRGR LV+ QSL+AGQ++LR+SP+LLYSA PF++SS   +C +CFR 
Sbjct:     7 AKPETLLRVAEIGGRGRSLVAAQSLRAGQVILRESPLLLYSAFPFLSSSVSPYCDHCFRL 66

Query:    60 TMHXXXXXXXX-XXVAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQ 118
                           V+FCSP C      +SH+P++C++L RL   +S   ++ P DRQ+Q
Sbjct:    67 LASSAHQKCQSCSLVSFCSPNCF-----ASHTPWLCESLRRLHQSSSSAFSDQPSDRQVQ 121

Query:   119 ARFLIAAYNLAVVNPSQFQILLAFQGTVTDN--------DTSAAHYL----SSLCPP-PA 165
             ARFL++AYNLA  +PS FQILL+ QG+ + N        D++AA +L    SS+CP  P 
Sbjct:   122 ARFLLSAYNLAAASPSDFQILLSLQGSGSSNGDPSCSAGDSAAAGFLHSLLSSVCPSLPV 181

Query:   166 STTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDY 225
             S + +LTAALL+KD++NAFGLMEP     + +RSVRAYGIY K SFFNHDCLPNACRFDY
Sbjct:   182 SISPDLTAALLSKDKVNAFGLMEPCSVSNE-KRSVRAYGIYPKTSFFNHDCLPNACRFDY 240

Query:   226 VDAAAENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEA 285
             VD+A++ NTDII+RMIHDVP+GRE+CLSYFPVN +YS+RQKRLL DY F CDCDRCKVE 
Sbjct:   241 VDSASDGNTDIIIRMIHDVPEGREVCLSYFPVNMNYSSRQKRLLEDYGFKCDCDRCKVEF 300

Query:   286 NWSXXXXXXXXXXXXXXXXXXXXX---XASDDDAEVHG-----DTNFPHAYFFMRYMCDR 337
             +WS                           +++ EV G     ++NFPHAYFF+RYMC++
Sbjct:   301 SWSEGEEDENEIMEEMEDQDEQEEMEDSVGENEEEVCGNGVDDESNFPHAYFFVRYMCEK 360

Query:   338 DNCWGTLAPLPPSDATPSTVMECNVCGNLKNDAIG 372
             +NC+GTLAPLPP     S V+ECNVCG++K D +G
Sbjct:   361 ENCFGTLAPLPPKTHDASRVLECNVCGSVKEDEVG 395
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2144138 SDG38 "AT5G06620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0036282 Smyd4 "SET and MYND domain protein 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292140 DDB_G0292140 "SET domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0000436 orf19.3665 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59VZ3 SET6 "Potential protein lysine methyltransferase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|E9PHG3 SMYD1 "SET and MYND domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0038869 CG3353 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIZ2 SMYD5 "SET and MYND domain-containing protein 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060522-1 smyd1b "SET and MYND domain containing 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZUM9ASHR2_ARATH2, ., 1, ., 1, ., 4, 30.55260.94220.9020yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
ASHR2
ASHR2 (ASH1-RELATED PROTEIN 2); ASH1-RELATED PROTEIN 2 (ASHR2); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- shoot apex, root; CONTAINS InterPro DOMAIN/s- SET (InterPro-IPR001214); BEST Arabidopsis thaliana protein match is- SDG38 (SET DOMAIN PROTEIN 38) (TAIR-AT5G06620.1); Has 1291 Blast hits to 1273 proteins in 151 species- Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 239; Plants - 166; Viruses - 3; Other Eukaryotes - 214 (source- NCBI BLink). ; Histone methyltransferase (By similarity) (398 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
SDG14
SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding; SET DOMAIN PRO [...] (1018 aa)
      • 0.790
ASHH4
ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4); histone-lysine N-methyltransferase; HISTONE-L [...] (352 aa)
      • 0.790
SDG29
SDG29 (SET DOMAIN GROUP 29); DNA binding / protein binding / zinc ion binding; Homology Subgrou [...] (1043 aa)
      • 0.788
SDG26
SDG26 (SET DOMAIN GROUP 26); histone-lysine N-methyltransferase; SET DOMAIN GROUP 26 (SDG26); F [...] (492 aa)
      • 0.786
SDG4
SDG4 (SET DOMAIN GROUP 4); histone methyltransferase; Encodes a member of the trxG protein fami [...] (497 aa)
      • 0.746
SDG16
SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding; SET DOMAIN PROTEIN 16 (SDG16 [...] (1027 aa)
      • 0.720
SDG25
SDG25 (SET DOMAIN PROTEIN 25); SET DOMAIN PROTEIN 25 (SDG25); EXPRESSED IN- 22 plant structures [...] (1423 aa)
      • 0.718
ATXR6
ATXR6; DNA binding / protein binding; Encodes a SET-domain protein. Contains a PCNA-binding dom [...] (349 aa)
      • 0.718
ATXR5
ATXR5; DNA binding / protein binding; Encodes a SET-domain protein. Contains a PCNA-binding dom [...] (379 aa)
      • 0.716
ASHH3
ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3); histone-lysine N-methyltransferase; HISTONE-L [...] (363 aa)
      • 0.714

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 4e-08
pfam00856113 pfam00856, SET, SET domain 5e-06
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 176 LAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNAC-RFDYVDAAAENNT 234
              D   AF L +      D    + A      A F NH C PN    F  V+     + 
Sbjct: 47  YDTDGAKAFYLFDI-----DSDLCIDARRKGNLARFINHSCEPNCELLFVEVN----GDD 97

Query: 235 DIIVRMIHDVPQGREICLSYFPVNYD 260
            I++  + D+  G E+ + Y     +
Sbjct: 98  RIVIFALRDIKPGEELTIDYGSDYAN 123

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
KOG2084 482 consensus Predicted histone tail methylase contain 99.88
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.67
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.42
KOG2589453 consensus Histone tail methylase [Chromatin struct 98.27
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.14
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 98.01
COG2940480 Proteins containing SET domain [General function p 97.92
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 97.92
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 97.16
KOG11411262 consensus Predicted histone methyl transferase [Ch 97.07
KOG1337472 consensus N-methyltransferase [General function pr 96.77
KOG1338466 consensus Uncharacterized conserved protein [Funct 96.62
KOG1085392 consensus Predicted methyltransferase (contains a 96.52
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 95.66
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 95.65
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 95.31
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 93.68
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 90.05
KOG2857157 consensus Predicted MYND Zn-finger protein/hormone 89.95
KOG1085392 consensus Predicted methyltransferase (contains a 88.79
KOG1081463 consensus Transcription factor NSD1 and related SE 85.13
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 84.42
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 81.87
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=99.88  E-value=9.1e-22  Score=199.72  Aligned_cols=289  Identities=21%  Similarity=0.332  Sum_probs=168.5

Q ss_pred             CCCccEEEEcccCCCCcEEEEcCcceeccccccccCcccccccccccCCCCCccCCCCCCC-cCccccchhhhhcCCchh
Q 046120           14 EGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVA-FCSPKCSTAAASSSHSPY   92 (381)
Q Consensus        14 ~~~GRglvAtrdi~~GevIl~e~P~v~~p~~~l~~~~~~C~~C~~~~~~~~~~~C~~C~~~-yCS~~C~~~a~~~~H~~~   92 (381)
                      +..|||++|+++|++|++|++|.|++.+|..      ..|..|+..    ....|..|... +|.. |....|...| .+
T Consensus        22 ~~~Gr~~~a~~~i~~g~~i~~e~p~~~~p~~------~~~~~c~~~----~~~~C~~~~~~~~~~~-~~~~~~~~~~-~~   89 (482)
T KOG2084|consen   22 PELGRGLVATQAIEAGEVILEEEPLVVGPAS------KSCSRCLGC----SCDHCRRCLEAIECNK-CQQRGWALCG-KF   89 (482)
T ss_pred             cccCcceeeecccCCCceEEecCcceeeecc------cCCcccccc----chhhhhcCCccHhhhh-hhccCccccc-hh
Confidence            4789999999999999999999999998875      344444432    23456666666 7753 3333333444 44


Q ss_pred             hhHhHHHhhhcCCCCCCCCChhHHHHHHHHHHHhhhccCCchhHHH--HHH---hcCCCCCCchhHHHH---HHhhCCC-
Q 046120           93 VCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAVVNPSQFQI--LLA---FQGTVTDNDTSAAHY---LSSLCPP-  163 (381)
Q Consensus        93 EC~~l~~~~~~~~~~~~~~~~~~~~~~R~l~~~~~l~~~~~~~~~~--l~~---L~~~~~~~~~~~~~~---l~~l~~~-  163 (381)
                      +|....... ...      +......-..+..........+..+..  +..   +..+..........+   ....... 
T Consensus        90 ~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (482)
T KOG2084|consen   90 ACSADLAKL-ECE------PLKLVGAPEECLALSSLHEESREAIVLLSLLEECSLSAEKPRLRLDLSYLEHGATEDDQSH  162 (482)
T ss_pred             hcchhhccc-ccc------chhhccchHHHHHhhcCCccccchHHHHHHHHHhhhhcccccHhHHHhhHHHHhhHHhhcc
Confidence            444311100 000      000000000001100111111111110  111   111110000000000   0000000 


Q ss_pred             -CCCCCHHHHHHHHHHhhccccccccCCcCCCCCCccceeEEeccccccccCCCCCCceeeeccccccCCCceEEEEEcc
Q 046120          164 -PASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENNTDIIVRMIH  242 (381)
Q Consensus       164 -~~~~~~~~i~~ll~~l~~Nsf~i~~~~~~~~~~~~~~~g~gLyp~~Sl~NHSC~PN~~~~~~~d~~~~~~~~l~vrA~r  242 (381)
                       ........+..++..+..|++.+......   ......+.|+||..+++||||.||+.. .|      .+....+++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~hsC~pn~~~-~~------~~~~~~~~~~~  232 (482)
T KOG2084|consen  163 LLLVLAADCISKLFPSLLCNSITNASSLRV---PEPLFLGRGLFPGSSLFNHSCFPNISV-IF------DGRGLALLVPA  232 (482)
T ss_pred             ccchhHHHHHHHHHHHHHHhhhhhhhhhhc---cccccceeeecccchhcccCCCCCeEE-EE------CCceeEEEeec
Confidence             01112333444555555666655432110   001148999999999999999999984 34      35566777778


Q ss_pred             CCCCCC-eeEEeecCCCCCHHHHHHHHhcCCCeeeeCccccCcccCCCCCCCCccchhhcchhhHHhhhcCccccccCCC
Q 046120          243 DVPQGR-EICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANWSDNDNDDENNEEVMDEDQDEQMVASDDDAEVHGD  321 (381)
Q Consensus       243 ~I~~Ge-El~isY~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  321 (381)
                      .+.+++ +|+++|++..+++..||.+|+..|.|.|.|+||.++++                             .     
T Consensus       233 ~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~~-----------------------------~-----  278 (482)
T KOG2084|consen  233 GIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPTE-----------------------------L-----  278 (482)
T ss_pred             ccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCCc-----------------------------c-----
Confidence            888776 99999999999999999999999999999999998663                             2     


Q ss_pred             CCCchhhHhhhcccCCCCcceeeecCCCCCCCCCceeeeCCccCcccccCc
Q 046120          322 TNFPHAYFFMRYMCDRDNCWGTLAPLPPSDATPSTVMECNVCGNLKNDAIG  372 (381)
Q Consensus       322 ~~~~~~~~~~~~~C~~~~C~g~~~p~~~~~~~~~~~~~C~~C~~~~~~~~~  372 (381)
                           ++++..++|..++|.+.+.+..+....  ..|.|..|.......++
T Consensus       279 -----~~~~~~~~c~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~  322 (482)
T KOG2084|consen  279 -----GTFLSSLRCENCTCGGLLGTSFLDKED--LQWPCTECALVRLKAYV  322 (482)
T ss_pred             -----ccchhhhhhcCCCCCCccCCCcccccC--CCccccccccchhHHHH
Confidence                 268899999999998777666555421  47999999998875433

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
3n71_A 490 Crystal Structure Of Cardiac Specific Histone Methy 1e-08
3pdn_A428 Crystal Structure Of Smyd3 In Complex With Methyltr 1e-06
3ru0_A438 Cocrystal Structure Of Human Smyd3 With Inhibitor S 1e-06
3oxg_A464 Human Lysine Methyltransferase Smyd3 In Complex Wit 1e-06
3qwp_A429 Crystal Structure Of Set And Mynd Domain Containing 1e-06
3oxf_A436 Human Lysine Methyltransferase Smyd3 In Complex Wit 1e-06
3mek_A429 Crystal Structure Of Human Histone-Lysine N- Methyl 1e-05
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 111/287 (38%), Gaps = 23/287 (8%)
Query: 6   ETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSF-CHNCFRKTMHXX 64
           E V V   EG+GRGL +T+   A  ++  +     YSA+ F +  +F CH CF++     
Sbjct: 7   ENVEVFTSEGKGRGLKATKEFWAADVIFAERA---YSAVVFDSLINFVCHTCFKRQ-EKL 62
Query: 65  XXXXXXXXVAFCSPKCSTAAASSSHSPYVCQALTR---LLNLNSPDAANLPLDRQLQARF 121
                     +C   C   A  +  +   C A+ +   + N N   AA +    + +   
Sbjct: 63  HRCGQCKFAHYCDRTCQKDAWLNHKNE--CAAIKKYGKVPNENIRLAARIMWRVEREGTG 120
Query: 122 LIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRL 181
           L     L  V+  Q  +    +    +       +L    P     +++  + +      
Sbjct: 121 LTEGC-LVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINC 179
Query: 182 NAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNAC------RFDYVDAAAENNTD 235
           N F L +     Q G ++V   GI+      NHDC PN          + V +       
Sbjct: 180 NGFTLSD-----QRGLQAV-GVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMR 233
Query: 236 IIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCK 282
           I +R +  + +G E+ +SY    +    R+++L   Y F C C+ C+
Sbjct: 234 IELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQ 280
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428 Back     alignment and structure
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438 Back     alignment and structure
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464 Back     alignment and structure
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429 Back     alignment and structure
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436 Back     alignment and structure
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
3qww_A433 SET and MYND domain-containing protein 2; methyltr 8e-40
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 2e-39
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 4e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 9e-06
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 5e-04
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
 Score =  145 bits (367), Expect = 8e-40
 Identities = 51/294 (17%), Positives = 81/294 (27%), Gaps = 33/294 (11%)

Query: 3   AVSETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMH 62
                +      G+GRGL + +    G ++           L        C  CF +   
Sbjct: 4   EARGGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYA--CVLTVGERGHHCECCFARK-- 59

Query: 63  SSSSICPSCSVA-FCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARF 121
              S C  C  A +C  +C             C ++  L    +P        R      
Sbjct: 60  EGLSKCGRCKQAFYCDVECQKED--WPLHKLECSSMVVLGENWNPS----ETVRLTARIL 113

Query: 122 LIAAYNLAVVNPSQFQILLAFQGTVTDNDTSAAHYLSS--------LCPPPASTTIELTA 173
                +       +   +  F+  +   D      + S                      
Sbjct: 114 AKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLV 173

Query: 174 ALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAAAENN 233
            L A+   N F +       +D   S     I+   +  NH C PN              
Sbjct: 174 VLFAQVNCNGFTI-------EDEELSHLGSAIFPDVALMNHSCCPNVIVTY-------KG 219

Query: 234 TDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEANW 287
           T   VR + ++  G E+  SY  + Y    R  RL   Y F C+C  C  +   
Sbjct: 220 TLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKDKD 273
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 100.0
3qww_A433 SET and MYND domain-containing protein 2; methyltr 100.0
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 100.0
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.57
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.38
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 99.33
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 99.32
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.28
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 99.22
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 99.19
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.08
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 99.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 98.89
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 98.89
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 98.87
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 98.82
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 98.78
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 98.78
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 98.71
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 98.64
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 98.57
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 98.54
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 98.48
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 97.73
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 97.7
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 97.64
3db5_A151 PR domain zinc finger protein 4; methyltransferase 97.6
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 97.56
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 97.43
3dal_A196 PR domain zinc finger protein 1; methyltransferase 97.16
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 96.88
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 96.84
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 96.61
3ray_A237 PR domain-containing protein 11; structural genomi 96.58
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 95.02
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 94.83
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 94.74
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 94.45
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 93.3
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 93.11
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 92.64
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 92.11
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 91.09
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 90.65
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 90.49
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 90.01
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 89.59
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 89.51
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 88.24
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 86.87
1wvo_A79 Sialic acid synthase; antifreeze protein like doma 84.65
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 83.96
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 83.95
3db5_A151 PR domain zinc finger protein 4; methyltransferase 80.79
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.2e-49  Score=401.77  Aligned_cols=265  Identities=21%  Similarity=0.385  Sum_probs=210.6

Q ss_pred             CC-CCCCceEEEEeCCCccEEEEcccCCCCcEEEEcCcceeccccccccCcccccccccccCCCCCccCCCCCCC-cCcc
Q 046120            1 MS-AVSETVTVAEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPSCSVA-FCSP   78 (381)
Q Consensus         1 ~~-~~s~~i~v~~~~~~GRglvAtrdi~~GevIl~e~P~v~~p~~~l~~~~~~C~~C~~~~~~~~~~~C~~C~~~-yCS~   78 (381)
                      || +..++|+|..++++||||||+|+|++||+||.|+|++.++..  .....+|.+|++...  .+.+|++|+++ |||+
T Consensus         1 ~~~~~~~~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~--~~~~~~C~~C~~~~~--~~~~C~~C~~~~yCs~   76 (490)
T 3n71_A            1 MTIGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFD--SLINFVCHTCFKRQE--KLHRCGQCKFAHYCDR   76 (490)
T ss_dssp             CCTTCCTTEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECG--GGTTTBCTTTCCBCS--CCEECTTTSCCEESSH
T ss_pred             CCCCCCCceEEEecCCCCceEEeccCCCCCCEEEecCCceEEecc--cccCCcCCCCCCCCC--CCCCCCCCCCcCcCCH
Confidence            44 556999999999999999999999999999999999866554  347899999999654  68899999999 9999


Q ss_pred             ccchhhhhcCCchhhhHhHHHhhhcCCCCCCCCChhHHHHHHHHHHHhhhc-cCCchhHHHHHHhcCCCCCCchhHH---
Q 046120           79 KCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLA-VVNPSQFQILLAFQGTVTDNDTSAA---  154 (381)
Q Consensus        79 ~C~~~a~~~~H~~~EC~~l~~~~~~~~~~~~~~~~~~~~~~R~l~~~~~l~-~~~~~~~~~l~~L~~~~~~~~~~~~---  154 (381)
                      +||+.+|. .| +.||..++.+. .      .++...++++|+|++..... ..++..|..|.+|++|.++......   
T Consensus        77 ~Cq~~~w~-~H-k~eC~~~~~~~-~------~p~~~~rl~lRiL~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~  147 (490)
T 3n71_A           77 TCQKDAWL-NH-KNECAAIKKYG-K------VPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKEL  147 (490)
T ss_dssp             HHHHHHHH-HH-HHHHHHHHHHT-S------CCCHHHHHHHHHHHHHHHTTSSBCTTCSSBGGGSCCCGGGCCHHHHHHH
T ss_pred             HHhhhhhh-HH-HHHhHHHHhcC-c------CCCHHHHHHHHHHHHhhccCccCcchhhhHHHHHHhhhhhcCchHHHHH
Confidence            99999995 67 99999998872 1      24566788999887643222 1223446678899999876654321   


Q ss_pred             ----HHHHhhCCCC-CCCCHHHHHHHHHHhhccccccccCCcCCCCCCccceeEEeccccccccCCCCCCceeeeccccc
Q 046120          155 ----HYLSSLCPPP-ASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAA  229 (381)
Q Consensus       155 ----~~l~~l~~~~-~~~~~~~i~~ll~~l~~Nsf~i~~~~~~~~~~~~~~~g~gLyp~~Sl~NHSC~PN~~~~~~~d~~  229 (381)
                          .-+..+++.. ..++.++|..+++++.+|+|+|....      ....+|.||||.+|+|||||.||+.++ |.+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~N~f~i~~~~------g~~~~g~gl~p~~s~~NHSC~PN~~~~-~~~~~  220 (490)
T 3n71_A          148 RVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQR------GLQAVGVGIFPNLGLVNHDCWPNCTVI-FNNGN  220 (490)
T ss_dssp             HHHHHHHHHHSCTTSCCCCHHHHHHHHHHHHTTEEEEECTT------SCSEEEEEECTTGGGCEECSSCSEEEE-EECCC
T ss_pred             HHHHHHHHHHccccccCCCHHHHHHHHHHHhccCcccccCC------CCccceEEEchhhhhcccCCCCCeeEE-ecCCc
Confidence                1123344432 46789999999999999999998531      134689999999999999999999853 42210


Q ss_pred             c-------CCCceEEEEEccCCCCCCeeEEeecCCCCCHHHHHHHHhcCCCeeeeCccccCcc
Q 046120          230 A-------ENNTDIIVRMIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFACDCDRCKVEA  285 (381)
Q Consensus       230 ~-------~~~~~l~vrA~r~I~~GeEl~isY~~~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~  285 (381)
                      .       +....++|+|+|||++||||||||++..+++.+||+.|++.|+|.|.|++|.++.
T Consensus       221 ~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~  283 (490)
T 3n71_A          221 HEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGL  283 (490)
T ss_dssp             CSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCSCSCHHHHHHHHHHHHSSCCCCHHHHHTT
T ss_pred             cccccccccccceEEEEECCCCCCCCEEEEeecCCCCCHHHHHHHHHCCCCeEeeCCCCCCCC
Confidence            0       0012899999999999999999999999999999999999999999999999876
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 381
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 6e-06
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 2e-04
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 0.001
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 38/271 (14%), Positives = 69/271 (25%), Gaps = 44/271 (16%)

Query: 11  AEIEGRGRGLVSTQSLKAGQIVLRDSPILLYSALPFINSSSFCHNCFRKTMHSSSSICPS 70
           A +   G GLV+ + +    ++L+    L  +       +       R      S + P 
Sbjct: 26  ASVVTEGLGLVALKDISRNDVILQVPKRLWINP-----DAVAASEIGRV----CSELKPW 76

Query: 71  CSVAFCSPKCSTAAASSSHSPYVCQALTRLLNLNSPDAANLPLDRQLQARFLIAAYNLAV 130
            SV         +   S    Y           +S    +    ++LQ   L+       
Sbjct: 77  LSVILFL-IRERSREDSVWKHYFGILPQET---DSTIYWSEEELQELQGSQLLKTTV--- 129

Query: 131 VNPSQFQILLAFQGTVTDNDTSAAHYLSSLCPPPASTTIELTAALLAKDRLNAFGLMEPY 190
                  +    +      +         L P P +      A  + + R          
Sbjct: 130 ------SVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSR---------- 173

Query: 191 IEGQDGRRSVRAYGIYLKASFFNHDCLPNA-CRFDYVDAAAENNTD---IIVRMIHDVPQ 246
                 R       +   A   NH            V  AA   +      ++    V  
Sbjct: 174 ---AFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKA 230

Query: 247 GREICLSYFPVNYDYSTRQKRLLYDYDFACD 277
           G ++ + Y     + S  +  L  DY F   
Sbjct: 231 GEQVYIQYDL---NKSNAE--LALDYGFIEP 256
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 99.78
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.03
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 98.98
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 98.79
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 98.61
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 98.16
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 97.99
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 97.97
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 96.89
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 94.86
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 94.82
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 94.2
d1x4sa146 Zinc finger HIT domain containing protein 2, ZNHIT 87.29
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 85.22
d1z60a159 TFIIH p44 subunit cysteine-rich domain {Human (Hom 83.29
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.78  E-value=3.3e-20  Score=170.03  Aligned_cols=95  Identities=16%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             CCCCHHHHHHHHHHhhccccccccCCcCCCCCCccceeEEeccccccccCCCCCCceeeeccccc-----cCCCceEEEE
Q 046120          165 ASTTIELTAALLAKDRLNAFGLMEPYIEGQDGRRSVRAYGIYLKASFFNHDCLPNACRFDYVDAA-----AENNTDIIVR  239 (381)
Q Consensus       165 ~~~~~~~i~~ll~~l~~Nsf~i~~~~~~~~~~~~~~~g~gLyp~~Sl~NHSC~PN~~~~~~~d~~-----~~~~~~l~vr  239 (381)
                      ..++.+.+..++..+..++|.+..           ..|.+|||.++||||||.||+.++.. +..     ...+..++|+
T Consensus       156 ~~~~~~~~~~a~~~v~sr~~~~~~-----------~~~~~l~P~~d~~NHsc~pn~~~~~~-~~~~~~~~~~~~~~~~l~  223 (261)
T d2h2ja2         156 DPVTLDDFFWAFGILRSRAFSRLR-----------NENLVVVPMADLINHSAGVTTEDHAY-EVKGAAGLFSWDYLFSLK  223 (261)
T ss_dssp             SCCCHHHHHHHHHHHHHHSBCCC--------------CCBCCTTGGGCEECSSCCSCCCCC-C-----------CEEEEE
T ss_pred             CccCHHHHHHHHHHhhcccccccc-----------cccccchhhhHHhhcCCCCCcccccc-cccCcccccCCCcEEEEE
Confidence            346788888899999999997643           24679999999999999999985422 110     0124579999


Q ss_pred             EccCCCCCCeeEEeecCCCCCHHHHHHHHhcCCCeee
Q 046120          240 MIHDVPQGREICLSYFPVNYDYSTRQKRLLYDYDFAC  276 (381)
Q Consensus       240 A~r~I~~GeEl~isY~~~~~~~~~Rr~~L~~~y~F~C  276 (381)
                      |.|+|++||||||||++.. +..    .|...|||.+
T Consensus       224 A~r~I~~GEEI~isYG~~~-~n~----~ll~~yGFv~  255 (261)
T d2h2ja2         224 SPLSVKAGEQVYIQYDLNK-SNA----ELALDYGFIE  255 (261)
T ss_dssp             CSSCCCTTSBCEECSCSSC-CHH----HHHHHSSCCC
T ss_pred             ECCCCCCCCEEEEecCCCC-CHH----HHHHhCCCCC
Confidence            9999999999999998643 332    3677899975
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure