Citrus Sinensis ID: 046123

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE
Secondary Structure (PSIPRED)
cccccEEEcccccccEEcccccccccccHHHccccccEEEccccccEEccHHHHHcccccEEccccccccccccccccccccccEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccHHHHccccHcccccHHHHHHHHHHHHEcccccccEcccccHHHHHcccEEEccccccHHcccccHHHHHHHcEEEccccHHHHccccccccHHccc
Coil and Loop (DISEMBL)
MKSLKTLVLSgclklkkfpdivgkssQRKLQAGISSWSFILegtairglPASIELLSGSvllnlkdcknlkslpstiNGLRSLRTLYLSGCSklknvpetlgkvesle
Flexible Loop (DISEMBL)
mkslktlvlsgclklkkfpdivgkssqrkLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCknlkslpstinglrSLRTLYLsgcsklknvpetlgkvesle
Low Complexity Region (SEG)
MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE
Disordered region (IsUnstruct)
*****TLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLK*************
Disordered Region (DISOPRED)
MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE
Disordered Region (DISEMBL)
MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPET********
Disordered Region (DISPRO)
*KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.916	0.086	0.398	2e-09
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.796	0.066	0.418	1e-08
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.888	0.050	0.364	4e-08
Q9FKZ1	809	Probable disease resistan	no	no	0.907	0.121	0.311	8e-05
Q6UWE0	723	E3 ubiquitin-protein liga	yes	no	0.611	0.091	0.441	0.0001
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.407	0.027	0.479	0.0002
Q9RBS2	1024	Protein PopC OS=Ralstonia	no	no	0.870	0.091	0.323	0.0002
O82500	1095	Putative disease resistan	no	no	0.833	0.082	0.292	0.0003
Q9LZ25	811	Probable disease resistan	no	no	0.583	0.077	0.396	0.0007

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 9/108 (8%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           ++SL+ L L  C  L+K P+I G+    K +  I      ++G+ IR LP+SI      V
Sbjct: 687 VESLEYLGLRSCDSLEKLPEIYGR---MKPEIQIH-----MQGSGIRELPSSIFQYKTHV 738

Query: 61  L-LNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
             L L + KNL +LPS+I  L+SL +L +SGCSKL+++PE +G +++L
Sbjct: 739 TKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNL 786

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 12/98 (12%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           + SL+TL LSGC  L+ FP          L +    W + LE TAI  +P++I  L   V
Sbjct: 842 LSSLETLDLSGCSSLRSFP----------LISTNIVWLY-LENTAIEEIPSTIGNLHRLV 890

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVP 98
            L +K C  L+ LP+ +N L SL TL LSGCS L++ P
Sbjct: 891 RLEMKKCTGLEVLPTDVN-LSSLETLDLSGCSSLRSFP 927

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 65/107 (60%), Gaps = 11/107 (10%)

Query: 1    MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
            ++SL+ L LSGC KL  FP+I    + ++L  G         GT I+ +P+SI+ L    
Sbjct: 1327 LESLEVLNLSGCSKLGNFPEI--SPNVKELYMG---------GTMIQEIPSSIKNLVLLE 1375

Query: 61   LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
             L+L++ ++LK+LP++I  L+ L TL LSGC  L+  P++  +++ L
Sbjct: 1376 KLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCL 1422

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 8/106 (7%)

Query: 3   SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLL 62
           SLKTL ++ C KL + P+ +G  S+ ++    SS +       +  LP + E LS    L
Sbjct: 674 SLKTLSITNCNKLSQLPEAIGNLSRLEVLRLCSSMN-------LSELPEATEGLSNLRFL 726

Query: 63  NLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
           ++  C  L+ LP  I  L++L+ + +  CS  + +PE++  +E+LE
Sbjct: 727 DISHCLGLRKLPQEIGKLQNLKKISMRKCSGCE-LPESVTNLENLE 771

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 41  LEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPET 100
           +E   +  LP SI  L+    LN+KD K LK LP T+  LRSLRTL +SG ++++ +P+ 
Sbjct: 111 VERNQLMQLPRSIGNLTQLQTLNVKDNK-LKELPDTVGELRSLRTLNISG-NEIQRLPQM 168

Query: 101 LGKVESLE 108
           L  V +LE
Sbjct: 169 LAHVRTLE 176

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) and exocytic (HIV-1 viral proteins) cargos.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)

Query: 60  VLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNV---PETLGKV 104
           V LN+K C NL+ LP  ++ L SL+ LYLSGCS+L+ +   P  L K+
Sbjct: 751 VCLNMKYCSNLRGLPDMVS-LESLKVLYLSGCSELEKIMGFPRNLKKL 797

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 11/105 (10%)

Query: 4   LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLN 63
           L+ L L+G  ++ + P + G SS   LQ      +  ++ TA+ GLPA    L     L+
Sbjct: 454 LQELTLNGN-RIHELPSMGGASS---LQ------TLTVDDTALAGLPADFGALRNLAHLS 503

Query: 64  LKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
           L + + L+ LP+    L +L+TL L G  +L  +P +LG +  LE
Sbjct: 504 LSNTQ-LRELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLE 547

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           +++L+T+ L+    L+  P+++  +   +L  G   W       ++  LP+SI+ L   +
Sbjct: 630 LRNLRTMNLNSSRNLEILPNLMEATKLNRLDLG---WC-----ESLVELPSSIKNLQHLI 681

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPE 99
           LL +  CK L+ +P+ IN L SL  L+   C++L+  PE
Sbjct: 682 LLEMSCCKKLEIIPTNIN-LPSLEVLHFRYCTRLQTFPE 719

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 46  IRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVE 105
           I+ LP ++  L    LL L  C  L SLP  I  L  L+ + +S C  L ++PE +GKV+
Sbjct: 688 IKELPKNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDISQCVSLSSLPEKIGKVK 747

Query: 106 SLE 108
           +LE
Sbjct: 748 TLE 750

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
359493483	1274	PREDICTED: TMV resistance protein N-like	0.916	0.077	0.532	3e-20
224126507	1741	tir-nbs-lrr resistance protein [Populus	0.916	0.056	0.522	6e-20
105922306	1778	TIR-NBS-NBS-LRR type disease resistance	0.916	0.055	0.522	6e-20
359493487	1162	PREDICTED: TMV resistance protein N-like	0.916	0.085	0.523	2e-19
109676360	1138	NBS-LRR type disease resistance-like pro	0.925	0.087	0.518	2e-19
105922810	1524	TIR-NBS-LRR-TIR type disease resistance	0.925	0.065	0.518	2e-19
224120756	813	hypothetical protein POPTRDRAFT_838042 [	0.925	0.123	0.518	2e-19
451798988	1219	TMV resistance protein N-like protein 6	0.916	0.081	0.523	6e-19
451798990	1335	TMV resistance protein N-like protein 7	0.916	0.074	0.523	8e-19
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.879	0.078	0.533	1e-18

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 76/107 (71%), Gaps = 8/107 (7%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           M+SL+ L LSGC KLKKFP++ G              +  LEGTAI+GLP SIE L+G  
Sbjct: 723 MESLQILTLSGCSKLKKFPEVQGNMEHLP--------NLSLEGTAIKGLPLSIENLTGLA 774

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
           LLNLK+CK+L+SLP +I  L+SL+TL LSGCS+LK++P+ LG ++ L
Sbjct: 775 LLNLKECKSLESLPRSIFKLKSLKTLILSGCSELKDLPDNLGSLQCL 821

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126507|ref|XP_002319855.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222858231|gb|EEE95778.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 77/109 (70%), Gaps = 10/109 (9%)

Query: 1    MKSLKTLVLSGCLKLKKFPDIVGK-SSQRKLQAGISSWSFILEGTAIRGLPASIELLSGS 59
            M+SL+   LS C KL KFPDIVG  +  R+L+         L+GTAI  L +S   L+G 
Sbjct: 1175 MESLEVCTLSSCSKLDKFPDIVGNINCLRELR---------LDGTAIAKLSSSFHCLAGL 1225

Query: 60   VLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
            VLL++ +CKNL+S+PS+I GL+SL+ L +S CS+LKN+PE LG+VESLE
Sbjct: 1226 VLLSMNNCKNLESIPSSIRGLKSLKRLDVSDCSELKNIPENLGEVESLE 1274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922306|gb|ABF81409.1| TIR-NBS-NBS-LRR type disease resistance protein [Populus trichocarpa] gi|105922325|gb|ABF81410.1| TIR-NBS-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 77/109 (70%), Gaps = 10/109 (9%)

Query: 1    MKSLKTLVLSGCLKLKKFPDIVGK-SSQRKLQAGISSWSFILEGTAIRGLPASIELLSGS 59
            M+SL+   LS C KL KFPDIVG  +  R+L+         L+GTAI  L +S   L+G 
Sbjct: 1194 MESLEVCTLSSCSKLDKFPDIVGNINCLRELR---------LDGTAIAKLSSSFHCLAGL 1244

Query: 60   VLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
            VLL++ +CKNL+S+PS+I GL+SL+ L +S CS+LKN+PE LG+VESLE
Sbjct: 1245 VLLSMNNCKNLESIPSSIRGLKSLKRLDVSDCSELKNIPENLGEVESLE 1293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 8/107 (7%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           M+SL+ L LSGC KLKKFP++ G              +  LEGTAI+GLP SIE L+G  
Sbjct: 729 MESLQILTLSGCSKLKKFPEVQGNMEHLP--------NLSLEGTAIKGLPLSIENLTGLA 780

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
           LLNLK+CK+L+SLP +I  L+SL+TL L GCS+LK +P+ LG ++ L
Sbjct: 781 LLNLKECKSLESLPRSIFKLKSLKTLTLCGCSELKELPDDLGSLQCL 827

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109676360|gb|ABG37662.1| NBS-LRR type disease resistance-like protein [Populus trichocarpa]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 72/108 (66%), Gaps = 8/108 (7%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           M+SLK   L GC KL+KFPDIVG  +              L+GT I  L +SI  L G  
Sbjct: 332 MESLKVFTLDGCTKLEKFPDIVGNMN--------CLMELCLDGTGIAELSSSIHHLIGLE 383

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
           +L++ +CKNL+S+PS+I  L+SL+ L LSGCS+LKN+PE LGKVESLE
Sbjct: 384 VLSMNNCKNLESIPSSIGCLKSLKKLDLSGCSELKNIPENLGKVESLE 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922810|gb|ABF81438.1| TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 72/108 (66%), Gaps = 8/108 (7%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           M+SLK   L GC KL+KFPDIVG  +              L+GT I  L +SI  L G  
Sbjct: 786 MESLKVFTLDGCTKLEKFPDIVGNMN--------CLMELCLDGTGIAELSSSIHHLIGLE 837

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
           +L++ +CKNL+S+PS+I  L+SL+ L LSGCS+LKN+PE LGKVESLE
Sbjct: 838 VLSMNNCKNLESIPSSIGCLKSLKKLDLSGCSELKNIPENLGKVESLE 885

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120756|ref|XP_002330944.1| hypothetical protein POPTRDRAFT_838042 [Populus trichocarpa] gi|222873138|gb|EEF10269.1| hypothetical protein POPTRDRAFT_838042 [Populus trichocarpa]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 72/108 (66%), Gaps = 8/108 (7%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           M+SLK   L GC KL+KFPDIVG  +              L+GT I  L +SI  L G  
Sbjct: 536 MESLKVFTLDGCTKLEKFPDIVGNMN--------CLMELCLDGTGIAELSSSIHHLIGLE 587

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
           +L++ +CKNL+S+PS+I  L+SL+ L LSGCS+LKN+PE LGKVESLE
Sbjct: 588 VLSMNNCKNLESIPSSIGCLKSLKKLDLSGCSELKNIPENLGKVESLE 635

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 73/107 (68%), Gaps = 8/107 (7%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           M+SL+ L LSGC KLKKFP++ G              +  LEGTAI+GLP SIE L+G  
Sbjct: 715 MESLQILTLSGCSKLKKFPEVQGNMEHLP--------NLSLEGTAIKGLPLSIENLTGLA 766

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
           LLNLK+CK+L+SLP +I  L+SL+TL LS C++LK +PE    +ESL
Sbjct: 767 LLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESL 813

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 73/107 (68%), Gaps = 8/107 (7%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           M+SL+ L LSGC KLKKFP++ G              +  LEGTAI+GLP SIE L+G  
Sbjct: 723 MESLQILTLSGCSKLKKFPEVQGNMEHLP--------NLSLEGTAIKGLPLSIENLTGLA 774

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
           LLNLK+CK+L+SLP +I  L+SL+TL LS C++LK +PE    +ESL
Sbjct: 775 LLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQENMESL 821

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 10/105 (9%)

Query: 4   LKTLVLSGCLKLKKFPDIVG-KSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLL 62
           L+ L LSGC KLK+FP+I G K   RKL          L+ T+I  LP SI+ L G + L
Sbjct: 715 LEELHLSGCSKLKEFPEIEGNKKCLRKL---------CLDQTSIEELPPSIQYLVGLISL 765

Query: 63  NLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
           +LKDCK L  LPS+INGL+SL+TL+LSGCS+L+N+PE  G++E L
Sbjct: 766 SLKDCKKLSCLPSSINGLKSLKTLHLSGCSELENLPENFGQLECL 810

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.879	0.079	0.481	2.4e-15
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.898	0.080	0.481	2.4e-15
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.898	0.081	0.453	1.7e-14
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.888	0.078	0.439	5.9e-14
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.870	0.076	0.447	5.9e-14
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.898	0.074	0.425	3.5e-13
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.814	0.075	0.444	1.7e-12
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.870	0.074	0.380	1.1e-11
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.796	0.070	0.412	5.6e-11
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.888	0.082	0.364	8.8e-11

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 51/106 (48%), Positives = 62/106 (58%)

Query:     3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLL 62
             SLKTL+LSGC K K F  I       KL+A        L+GTAI+ LP  I  L   V+L
Sbjct:   730 SLKTLILSGCSKFKTFQVI-----SDKLEA------LYLDGTAIKELPCDIGRLQRLVML 778

Query:    63 NLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
             N+K CK LK LP ++  L++L  L LSGCSKL   PET G +  LE
Sbjct:   779 NMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLE 824

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 52/108 (48%), Positives = 69/108 (63%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
             +KSLKTL+LSGCLKLK F  I+ +S +          S  LEGTAI  +   IE L   +
Sbjct:   702 IKSLKTLILSGCLKLKDF-HIISESIE----------SLHLEGTAIERVVEHIESLHSLI 750

Query:    61 LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
             LLNLK+C+ LK LP+ +  L+SL+ L LSGCS L+++P    K+E LE
Sbjct:   751 LLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLPPIKEKMECLE 798

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 49/108 (45%), Positives = 69/108 (63%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
             +KSLKTL+LS C   ++FP ++ +     L+A        L+GTAI+ +P SIE L   +
Sbjct:   749 LKSLKTLILSHCKNFEQFP-VISEC----LEA------LYLQGTAIKCIPTSIENLQKLI 797

Query:    61 LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
             LL+LKDC+ L SLP  +  LRSL+ L LSGCSKLK  PE    ++S++
Sbjct:   798 LLDLKDCEVLVSLPDCLGNLRSLQELILSGCSKLKFFPELKETMKSIK 845

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 5.9e-14, P = 5.9e-14
 Identities = 47/107 (43%), Positives = 66/107 (61%)

Query:     2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVL 61
             +SL+TL+LSGC  LKKFP ++ ++ +            +L+GT I+ LP SI+      L
Sbjct:   713 QSLQTLILSGCSSLKKFP-LISENVE----------VLLLDGTVIKSLPESIQTFRRLAL 761

Query:    62 LNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
             LNLK+CK LK L S +  L+ L+ L LSGCS+L+  PE    +ESLE
Sbjct:   762 LNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLE 808

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 5.9e-14, P = 5.9e-14
 Identities = 47/105 (44%), Positives = 62/105 (59%)

Query:     3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLL 62
             SLKTL+LSGC   + F +++ +  +          S  L GT I GLP +I  L   + L
Sbjct:   728 SLKTLILSGCSSFQTF-EVISEHLE----------SLYLNGTEINGLPPAIGNLHRLIFL 776

Query:    63 NLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
             NLKDCKNL +LP  +  L+SL+ L LS CSKLK  P+   K+ESL
Sbjct:   777 NLKDCKNLATLPDCLGELKSLQELKLSRCSKLKIFPDVTAKMESL 821

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 46/108 (42%), Positives = 67/108 (62%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
             +KSL+T+ +SGC  LK FP+I   +  R+L          L  T I  LP+SI  LS  V
Sbjct:   694 LKSLETVGMSGCSSLKHFPEISWNT--RRLY---------LSSTKIEELPSSISRLSCLV 742

Query:    61 LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
              L++ DC+ L++LPS +  L SL++L L GC +L+N+P+TL  + SLE
Sbjct:   743 KLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQNLTSLE 790

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 44/99 (44%), Positives = 61/99 (61%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
             + SLKTL LS C   K+FP I        L+A        L+GT+I  LP ++  L   V
Sbjct:   704 LTSLKTLTLSNCSNFKEFPLI-----PENLKA------LYLDGTSISQLPDNVGNLKRLV 752

Query:    61 LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPE 99
             LLN+KDCK L+++P+ ++ L++L+ L LSGCSKLK  PE
Sbjct:   753 LLNMKDCKVLETIPTCVSELKTLQKLVLSGCSKLKEFPE 791

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 40/105 (38%), Positives = 64/105 (60%)

Query:     4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLN 63
             L+TL+LS C + K+F  ++ K+ +             L+GTAI+ LP++I  L   + L 
Sbjct:   733 LRTLILSNCSRFKEFK-LIAKNLEE----------LYLDGTAIKELPSTIGDLQKLISLK 781

Query:    64 LKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
             LKDCKNL SLP +I  L++++ + LSGCS L++ PE    ++ L+
Sbjct:   782 LKDCKNLLSLPDSIGNLKAIQEIILSGCSSLESFPEVNQNLKHLK 826

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 40/97 (41%), Positives = 57/97 (58%)

Query:     3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLL 62
             SLKTL LSGC   K+FP ++  + +          +  L+GTAI  LP ++E L   V+L
Sbjct:   730 SLKTLTLSGCSTFKEFP-LISDNIE----------TLYLDGTAISQLPMNMEKLQRLVVL 778

Query:    63 NLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPE 99
             N+KDCK L+ +P  +  L++L+ L LS C  LK  PE
Sbjct:   779 NMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPE 815

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 39/107 (36%), Positives = 66/107 (61%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
             + SLK L+LS C KL++F +++ ++ +             L+GTAI+GLP +   L+  V
Sbjct:   769 VSSLKILILSDCSKLEEF-EVISENLEE----------LYLDGTAIKGLPPAAGDLTRLV 817

Query:    61 LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
             +LN++ C  L+SLP  +   ++L+ L LSGCSKL++VP  +  ++ L
Sbjct:   818 VLNMEGCTELESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHL 864

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130958 hypothetical protein (1741 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 9/99 (9%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           +  L+ + L G   LK+ PD+   ++   L+  +S  S ++E      LP+SI+ L+   
Sbjct: 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLK--LSDCSSLVE------LPSSIQYLNKLE 684

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPE 99
            L++  C+NL+ LP+ IN L+SL  L LSGCS+LK+ P+
Sbjct: 685 DLDMSRCENLEILPTGIN-LKSLYRLNLSGCSRLKSFPD 722

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 49  LPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL 107
           LP+SI+ L     L +++C NL++LP+ IN L SL +L LSGCS+L+  P+    +  L
Sbjct: 794 LPSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDL 851

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           ++SL++L LSGC +L+ FPDI    S   L             T I  +P  IE  S   
Sbjct: 824 LESLESLDLSGCSRLRTFPDISTNISDLNLS-----------RTGIEEVPWWIEKFSNLS 872

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKL 94
            L++  C NL+ +   I+ L+ L T+  S C  L
Sbjct: 873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 41/128 (32%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIEL----- 55
           +KSL  L LSGC +LK FPDI          +   SW   L+ TAI   P+++ L     
Sbjct: 703 LKSLYRLNLSGCSRLKSFPDI----------STNISW-LDLDETAIEEFPSNLRLENLDE 751

Query: 56  ------------------------LSGSVL-LNLKDCKNLKSLPSTINGLRSLRTLYLSG 90
                                   LS S+  L L D  +L  LPS+I  L  L  L +  
Sbjct: 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811

Query: 91  CSKLKNVP 98
           C  L+ +P
Sbjct: 812 CINLETLP 819

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.25
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.23
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.11
PLN03150	623	hypothetical protein; Provisional	99.03
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
PLN03150	623	hypothetical protein; Provisional	98.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.63
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.61
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.57
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.56
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.55
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.29
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.18
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.02
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.01
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.96
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.91
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.82
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.5
PRK15386	426	type III secretion protein GogB; Provisional	97.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.3
PRK15386	426	type III secretion protein GogB; Provisional	97.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.54
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.28
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.01
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.8
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.31
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.14
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.38
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.8
smart00370	26	LRR Leucine-rich repeats, outliers.	92.8
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	92.23
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	88.54
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.79
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	85.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	83.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	82.76
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.49
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.25  E-value=1.3e-11  Score=96.79  Aligned_cols=69  Identities=20%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             EEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCC
Q 046123           38 SFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVES  106 (108)
Q Consensus        38 ~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~  106 (108)
                      +|++++|.+. .+|+.++.+++|+.|++++|.....+|..++.+++|++|++++|...+.+|..++++++
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  261 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN  261 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence            4444444433 33333444444444444443333344444444444444444444443444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.23  E-value=1.9e-11  Score=95.87  Aligned_cols=99  Identities=24%  Similarity=0.371  Sum_probs=63.2

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++|++|++++|.....+|..++.+.+|   +     +|++++|.+. .+|..+..+++|+.|++++|.....+|+.++.+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L---~-----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  211 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSL---K-----VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM  211 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCC---C-----EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence            345555555543333455556666666   6     7777777665 556667777777777777765555667777777


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++|+++++++|.....+|..++++++|+
T Consensus       212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             CCccEEECcCCccCCcCChhHhcCCCCC
Confidence            7777777777666666776666666553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.11  E-value=2.5e-12  Score=83.64  Aligned_cols=95  Identities=22%  Similarity=0.346  Sum_probs=53.6

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCc-cccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLK-SLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l   80 (108)
                      ++|++|++.+ ++++++|..++.+++|   +     .|+++-|++..+|.+|+.++.|+.|++..|+.-. .+|..|..|
T Consensus        56 ~nlevln~~n-nqie~lp~~issl~kl---r-----~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m  126 (264)
T KOG0617|consen   56 KNLEVLNLSN-NQIEELPTSISSLPKL---R-----ILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM  126 (264)
T ss_pred             hhhhhhhccc-chhhhcChhhhhchhh---h-----heecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHH
Confidence            4566666666 5677777777777777   7     7777777777677777777777777776643211 234444433


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVES  106 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~  106 (108)
                      ..|+.+.+.+ +-...+|..++++++
T Consensus       127 ~tlralyl~d-ndfe~lp~dvg~lt~  151 (264)
T KOG0617|consen  127 TTLRALYLGD-NDFEILPPDVGKLTN  151 (264)
T ss_pred             HHHHHHHhcC-CCcccCChhhhhhcc
Confidence            3344444433 222334444444443

>PLN03150 hypothetical protein; Provisional

Probab=99.03  E-value=4.6e-10  Score=85.20  Aligned_cols=92  Identities=29%  Similarity=0.362  Sum_probs=77.7

Q ss_pred             CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      ++.|++++|.....+|..+..+.+|   +     .|++++|.+. .+|+.++.+++|+.|++++|+..+.+|+.++.+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L---~-----~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~  491 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHL---Q-----SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS  491 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCC---C-----EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence            5678888855445678888888999   8     9999999998 77888999999999999997766789999999999


Q ss_pred             CCEEeecCCCCCcccccCcCC
Q 046123           83 LRTLYLSGCSKLKNVPETLGK  103 (108)
Q Consensus        83 L~~l~l~~~~~~~~~p~~~~~  103 (108)
                      |++|++++|.....+|..++.
T Consensus       492 L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        492 LRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             CCEEECcCCcccccCChHHhh
Confidence            999999998888888876644

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.95  E-value=3e-11  Score=78.72  Aligned_cols=92  Identities=24%  Similarity=0.285  Sum_probs=76.7

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      .++.|-+++ ++++.+|+.+..+.+|   +     .|++.+|++..+|.++..+++|+.|+++- +.+..+|.+||.++.
T Consensus        34 ~ITrLtLSH-NKl~~vppnia~l~nl---e-----vln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~  103 (264)
T KOG0617|consen   34 NITRLTLSH-NKLTVVPPNIAELKNL---E-----VLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPA  103 (264)
T ss_pred             hhhhhhccc-CceeecCCcHHHhhhh---h-----hhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCch
Confidence            456677888 6888899888888888   8     99999999999999999999999999987 678889999999999


Q ss_pred             CCEEeecCCCCCc-ccccCcCCC
Q 046123           83 LRTLYLSGCSKLK-NVPETLGKV  104 (108)
Q Consensus        83 L~~l~l~~~~~~~-~~p~~~~~l  104 (108)
                      |+++|+.+|+... .+|..|-.|
T Consensus       104 levldltynnl~e~~lpgnff~m  126 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYM  126 (264)
T ss_pred             hhhhhccccccccccCCcchhHH
Confidence            9999999877644 566554333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=3.4e-09  Score=57.39  Aligned_cols=54  Identities=30%  Similarity=0.437  Sum_probs=39.4

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCCC
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGCS   92 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~   92 (108)
                      .+++++|++..+|+. |.++++|+.+++++ +.+..++ .+|.++++|+++++++|.
T Consensus         5 ~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    5 SLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             EEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             EEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            778888888777654 77788888888887 4455555 467788888888888764

...

>PLN03210 Resistant to P

Probab=98.85  E-value=1.5e-08  Score=81.56  Aligned_cols=61  Identities=41%  Similarity=0.705  Sum_probs=30.2

Q ss_pred             EEEecCcc-ccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCccccc
Q 046123           38 SFILEGTA-IRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPE   99 (108)
Q Consensus        38 ~l~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~   99 (108)
                      .|++.+|. +..+|..++.+++|+.|++++|+.+..+|..+ ++++|+++++++|..+..+|.
T Consensus       661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~  722 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD  722 (1153)
T ss_pred             EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence            55554432 33445455555555555555555555555443 345555555555544444443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.83  E-value=1.6e-08  Score=81.31  Aligned_cols=90  Identities=30%  Similarity=0.492  Sum_probs=68.0

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcc-ccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTA-IRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      .+|+.|++.+ +.++.++..+..+.+|   +     .++++++. +..+| .+..+++|+.|++++|..+..+|..++.+
T Consensus       611 ~~L~~L~L~~-s~l~~L~~~~~~l~~L---k-----~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        611 ENLVKLQMQG-SKLEKLWDGVHSLTGL---R-----NIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             cCCcEEECcC-ccccccccccccCCCC---C-----EEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhcc
Confidence            3566777777 4577777666677777   7     88887754 55555 36778888888888888888888888888


Q ss_pred             CCCCEEeecCCCCCcccccCc
Q 046123           81 RSLRTLYLSGCSKLKNVPETL  101 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~  101 (108)
                      .+|+++++++|+.+..+|..+
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC
Confidence            888888888888888887654

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=6.6e-09  Score=56.21  Aligned_cols=58  Identities=22%  Similarity=0.343  Sum_probs=51.0

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCK   68 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~   68 (108)
                      ++|++|++++ +.++.+| ..+..+.+|   +     ++++++|.+..+++ .|.++++|+.+++++|+
T Consensus         1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L---~-----~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSN-NKLTEIPPDSFSNLPNL---E-----TLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETS-STESEECTTTTTTGTTE---S-----EEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCC-CCCCccCHHHHcCCCCC---C-----EeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            5789999999 5888987 577889999   9     99999999998865 48999999999999964

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.81  E-value=5.8e-10  Score=84.39  Aligned_cols=82  Identities=29%  Similarity=0.363  Sum_probs=65.8

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ..|+.||+++ ++++++|..+..-.++   -     +|++++|+|.++|.. |-+++.|-+|++++ +.+..+|+-+..+
T Consensus       103 ~dLt~lDLSh-NqL~EvP~~LE~AKn~---i-----VLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL  172 (1255)
T KOG0444|consen  103 KDLTILDLSH-NQLREVPTNLEYAKNS---I-----VLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRL  172 (1255)
T ss_pred             ccceeeecch-hhhhhcchhhhhhcCc---E-----EEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHH
Confidence            4578888888 6888888777766666   6     888888888888876 77888888888888 6788888888778


Q ss_pred             CCCCEEeecCCCC
Q 046123           81 RSLRTLYLSGCSK   93 (108)
Q Consensus        81 ~~L~~l~l~~~~~   93 (108)
                      ..|++|++++|..
T Consensus       173 ~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPL  185 (1255)
T ss_pred             hhhhhhhcCCChh
Confidence            8888888887654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=6.1e-09  Score=81.69  Aligned_cols=82  Identities=33%  Similarity=0.441  Sum_probs=63.9

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      |+.|++||+++|..+.++|+.++.+.+|   +     +|+++++.++.+|.+++++..|.+|++..+.....+|.....+
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~L---r-----yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L  641 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHL---R-----YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL  641 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhh---h-----cccccCCCccccchHHHHHHhhheeccccccccccccchhhhc
Confidence            4567888888877788888888888888   8     8888888888888888888888888888766555665555668


Q ss_pred             CCCCEEeecC
Q 046123           81 RSLRTLYLSG   90 (108)
Q Consensus        81 ~~L~~l~l~~   90 (108)
                      .+|+++.+..
T Consensus       642 ~~Lr~L~l~~  651 (889)
T KOG4658|consen  642 QSLRVLRLPR  651 (889)
T ss_pred             ccccEEEeec
Confidence            8888887765

>PLN03150 hypothetical protein; Provisional

Probab=98.70  E-value=5e-08  Score=74.28  Aligned_cols=90  Identities=19%  Similarity=0.306  Sum_probs=75.0

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      +++|+.|++++|.....+|+.++.+.+|   +     .|++++|++. .+|+.++.+++|+.|++++|+..+.+|..++.
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L---~-----~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSL---E-----VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCC---C-----EEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            4689999999965555788889999999   9     9999999998 78888999999999999998877789998876


Q ss_pred             C-CCCCEEeecCCCCCcccc
Q 046123           80 L-RSLRTLYLSGCSKLKNVP   98 (108)
Q Consensus        80 l-~~L~~l~l~~~~~~~~~p   98 (108)
                      . .++..+++.+|......|
T Consensus       513 ~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        513 RLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ccccCceEEecCCccccCCC
Confidence            4 467788998876554444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.69  E-value=2.4e-09  Score=77.26  Aligned_cols=83  Identities=23%  Similarity=0.359  Sum_probs=58.9

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-----------------------ccCcc-cccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-----------------------GLPAS-IELLS   57 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-----------------------~~p~~-~~~l~   57 (108)
                      ++|..|++++ +.+.++|..++.+..|   +     .++++.|++.                       .++++ +..|.
T Consensus       435 ~kLt~L~L~N-N~Ln~LP~e~~~lv~L---q-----~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  435 QKLTFLDLSN-NLLNDLPEEMGSLVRL---Q-----TLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             hcceeeeccc-chhhhcchhhhhhhhh---h-----eecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence            4567777777 6777788777777777   7     7777766553                       34444 66777


Q ss_pred             CCcEEeccCCcCCccccccccCCCCCCEEeecCCCCC
Q 046123           58 GSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKL   94 (108)
Q Consensus        58 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~   94 (108)
                      +|..||+.+ +.+..+|+.+|+|.+|+++++.+|++-
T Consensus       506 nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  506 NLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence            777888776 567777777788888888888776543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.63  E-value=2e-09  Score=77.67  Aligned_cols=90  Identities=32%  Similarity=0.445  Sum_probs=62.2

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCccc-ccCCCCcEEeccCCcCCccccccccCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASI-ELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      +|+.|++.. +++..+| .++.+..|   .     .+.++.|+++.+|++. .++.++..||+.+ +++++.|+.+.-++
T Consensus       207 ~L~~LyL~~-Nki~~lP-ef~gcs~L---~-----Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLr  275 (565)
T KOG0472|consen  207 SLELLYLRR-NKIRFLP-EFPGCSLL---K-----ELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLR  275 (565)
T ss_pred             hhHHHHhhh-cccccCC-CCCccHHH---H-----HHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhh
Confidence            344455555 4555555 45555555   5     6666666666666663 3778888888888 66888888887888


Q ss_pred             CCCEEeecCCCCCcccccCcCCC
Q 046123           82 SLRTLYLSGCSKLKNVPETLGKV  104 (108)
Q Consensus        82 ~L~~l~l~~~~~~~~~p~~~~~l  104 (108)
                      +|.++|+++ +.+..+|..+++|
T Consensus       276 sL~rLDlSN-N~is~Lp~sLgnl  297 (565)
T KOG0472|consen  276 SLERLDLSN-NDISSLPYSLGNL  297 (565)
T ss_pred             hhhhhcccC-CccccCCcccccc
Confidence            888888887 5567788777766

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.61  E-value=7.4e-08  Score=62.73  Aligned_cols=79  Identities=22%  Similarity=0.285  Sum_probs=25.2

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCccc-ccCCCCcEEeccCCcCCccccc--cccC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASI-ELLSGSVLLNLKDCKNLKSLPS--TING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~lp~--~~~~   79 (108)
                      +|+.|++++ +.++.+. .+..+..|   +     .|++++|+++++.+.+ ..+++|+.|++++ +.+..+-+  .++.
T Consensus        43 ~L~~L~Ls~-N~I~~l~-~l~~L~~L---~-----~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~  111 (175)
T PF14580_consen   43 KLEVLDLSN-NQITKLE-GLPGLPRL---K-----TLDLSNNRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSS  111 (175)
T ss_dssp             T--EEE-TT-S--S--T-T----TT----------EEE--SS---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG
T ss_pred             CCCEEECCC-CCCcccc-CccChhhh---h-----hcccCCCCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHc
Confidence            455666666 3455553 23445555   5     6666666666554443 2456666666665 33443322  3445


Q ss_pred             CCCCCEEeecCCC
Q 046123           80 LRSLRTLYLSGCS   92 (108)
Q Consensus        80 l~~L~~l~l~~~~   92 (108)
                      +++|+++++.+|.
T Consensus       112 l~~L~~L~L~~NP  124 (175)
T PF14580_consen  112 LPKLRVLSLEGNP  124 (175)
T ss_dssp             -TT--EEE-TT-G
T ss_pred             CCCcceeeccCCc
Confidence            5666666666644

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.57  E-value=3.9e-09  Score=79.15  Aligned_cols=40  Identities=23%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccC
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLP   50 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p   50 (108)
                      ++|+.|++++ +.+..+ ++.+...++|   .     +|++++|++..++
T Consensus       293 t~L~~L~lS~-NaI~rih~d~WsftqkL---~-----~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  293 TSLEQLDLSY-NAIQRIHIDSWSFTQKL---K-----ELDLSSNRITRLD  333 (873)
T ss_pred             chhhhhccch-hhhheeecchhhhcccc---e-----eEeccccccccCC
Confidence            3455555555 334443 3444555555   5     5555555554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.56  E-value=6.3e-08  Score=63.06  Aligned_cols=82  Identities=22%  Similarity=0.376  Sum_probs=29.1

Q ss_pred             CCcEEeccCCcCCCcCCcccC-CccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccc-cCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVG-KSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTI-NGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~-~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l   80 (108)
                      .++.|++++ +.++.+.. ++ .+.+|   +     .|++++|.++.++ .+..+++|+.|++++ +.++.+.+++ ..+
T Consensus        20 ~~~~L~L~~-n~I~~Ie~-L~~~l~~L---~-----~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~l   87 (175)
T PF14580_consen   20 KLRELNLRG-NQISTIEN-LGATLDKL---E-----VLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNL   87 (175)
T ss_dssp             -----------------S---TT-TT----------EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-
T ss_pred             ccccccccc-cccccccc-hhhhhcCC---C-----EEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhC
Confidence            467899999 57777643 34 46788   8     9999999999875 588899999999999 6788886655 468


Q ss_pred             CCCCEEeecCCCCCccc
Q 046123           81 RSLRTLYLSGCSKLKNV   97 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~   97 (108)
                      ++|++|++++|. +..+
T Consensus        88 p~L~~L~L~~N~-I~~l  103 (175)
T PF14580_consen   88 PNLQELYLSNNK-ISDL  103 (175)
T ss_dssp             TT--EEE-TTS----SC
T ss_pred             CcCCEEECcCCc-CCCh
Confidence            999999999854 4443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.55  E-value=3.8e-09  Score=80.07  Aligned_cols=96  Identities=25%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      .+|..+|++. +.+..+|+++..+.+|   +     .|++++|.+..+....+.+.+++.|+++. +.+..+|+++..++
T Consensus       222 ~NL~dvDlS~-N~Lp~vPecly~l~~L---r-----rLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  222 HNLRDVDLSE-NNLPIVPECLYKLRNL---R-----RLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLT  291 (1255)
T ss_pred             hhhhhccccc-cCCCcchHHHhhhhhh---h-----eeccCcCceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhH
Confidence            3556667766 5677777777777777   7     77777777766665566666677777766 45666666666666


Q ss_pred             CCCEEeecCCCC-CcccccCcCCCCCC
Q 046123           82 SLRTLYLSGCSK-LKNVPETLGKVESL  107 (108)
Q Consensus        82 ~L~~l~l~~~~~-~~~~p~~~~~l~~L  107 (108)
                      .|+.|.+.+|.. ..-+|..++++..|
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhh
Confidence            666666655433 23456666555433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.47  E-value=7e-08  Score=72.61  Aligned_cols=95  Identities=22%  Similarity=0.317  Sum_probs=67.7

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      +.|++||++. +.+.++| +.+..-.++   .     +|++++|+|..+... |..+.+|..+.++. +.+..+|. .|+
T Consensus       149 ~alrslDLSr-N~is~i~~~sfp~~~ni---~-----~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk  218 (873)
T KOG4194|consen  149 PALRSLDLSR-NLISEIPKPSFPAKVNI---K-----KLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFK  218 (873)
T ss_pred             hhhhhhhhhh-chhhcccCCCCCCCCCc---e-----EEeeccccccccccccccccchheeeeccc-CcccccCHHHhh
Confidence            4577888888 5777776 555555667   7     888888888877554 88888888888888 56778775 566


Q ss_pred             CCCCCCEEeecCCCCCcccc-cCcCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVP-ETLGKVESL  107 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L  107 (108)
                      .+++|+.|++.. |.++.+- ..|+.+.+|
T Consensus       219 ~L~~L~~LdLnr-N~irive~ltFqgL~Sl  247 (873)
T KOG4194|consen  219 RLPKLESLDLNR-NRIRIVEGLTFQGLPSL  247 (873)
T ss_pred             hcchhhhhhccc-cceeeehhhhhcCchhh
Confidence            688888888887 4445442 345555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.45  E-value=6.9e-08  Score=75.92  Aligned_cols=97  Identities=28%  Similarity=0.391  Sum_probs=71.5

Q ss_pred             CCcEEeccCCcC-CCcCC-cccCCccccccccCcceeEEEecCcc-ccccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123            3 SLKTLVLSGCLK-LKKFP-DIVGKSSQRKLQAGISSWSFILEGTA-IRGLPASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~-~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~-~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      .|++|-+.++.. +..++ ..+..++.|   +     +||+++|. +..+|..++.+.+|++|++++ ..+..+|.++++
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~L---r-----VLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~  616 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLL---R-----VLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGN  616 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcce---E-----EEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHH
Confidence            355666655321 44444 335667888   8     99998775 568898899999999999998 678889999999


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++.|.+|++..+.....+|.....|++||
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HHhhheeccccccccccccchhhhccccc
Confidence            99999999988766666666555566554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.29  E-value=5.1e-07  Score=70.23  Aligned_cols=60  Identities=25%  Similarity=0.375  Sum_probs=37.3

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCc
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETL  101 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~  101 (108)
                      .|++++|.++.+|..   ..+|+.|++++ +.+..+|+.++.+.+|+++++++|+.....|..+
T Consensus       406 ~LdLS~N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        406 ELMVSGNRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             EEEccCCcCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            455555555544432   23456666666 4466777777788888888888877665544433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.28  E-value=8.8e-08  Score=74.68  Aligned_cols=80  Identities=30%  Similarity=0.383  Sum_probs=48.8

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +.|++|++++ +.+..+| ..+.++..|   .     .|+++||.++.+|..+..+..|++|...+ +.+..+| .+..+
T Consensus       383 ~hLKVLhLsy-NrL~~fpas~~~kle~L---e-----eL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l  451 (1081)
T KOG0618|consen  383 KHLKVLHLSY-NRLNSFPASKLRKLEEL---E-----ELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQL  451 (1081)
T ss_pred             cceeeeeecc-cccccCCHHHHhchHHh---H-----HHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhc
Confidence            4567777777 5667676 344555666   6     66777776666666566666666666555 4455555 35555


Q ss_pred             CCCCEEeecCCC
Q 046123           81 RSLRTLYLSGCS   92 (108)
Q Consensus        81 ~~L~~l~l~~~~   92 (108)
                      ++|+++|++.|+
T Consensus       452 ~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  452 PQLKVLDLSCNN  463 (1081)
T ss_pred             CcceEEecccch
Confidence            566666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=1.1e-06  Score=44.64  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=21.4

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccc
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSL   73 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l   73 (108)
                      +|++++|+++.+|+.+..+++|+.|++++| .+.++
T Consensus         5 ~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    5 ELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             EEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             EEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            666666666666665666666666666664 34444

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.24  E-value=1.5e-07  Score=73.48  Aligned_cols=89  Identities=31%  Similarity=0.410  Sum_probs=76.7

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      +|++|+++. +.+..+|..+..+.+|   +     .+.++.|.+.++|.+...+.+|+++.+.. +.+..+|.++..+++
T Consensus        46 ~L~~l~lsn-n~~~~fp~~it~l~~L---~-----~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lkn  115 (1081)
T KOG0618|consen   46 KLKSLDLSN-NQISSFPIQITLLSHL---R-----QLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKN  115 (1081)
T ss_pred             eeEEeeccc-cccccCCchhhhHHHH---h-----hcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhc
Confidence            478999998 7899999888888899   8     99999999999998899999999999987 778899999999999


Q ss_pred             CCEEeecCCCCCcccccCcC
Q 046123           83 LRTLYLSGCSKLKNVPETLG  102 (108)
Q Consensus        83 L~~l~l~~~~~~~~~p~~~~  102 (108)
                      |++++++.|. ...+|..+.
T Consensus       116 l~~LdlS~N~-f~~~Pl~i~  134 (1081)
T KOG0618|consen  116 LQYLDLSFNH-FGPIPLVIE  134 (1081)
T ss_pred             ccccccchhc-cCCCchhHH
Confidence            9999999954 455665443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.22  E-value=5.3e-08  Score=70.11  Aligned_cols=68  Identities=28%  Similarity=0.477  Sum_probs=35.8

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCcc-ccccccCCCCCCEEeecCCCCCccccc-CcCCCCC
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKS-LPSTINGLRSLRTLYLSGCSKLKNVPE-TLGKVES  106 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~l~l~~~~~~~~~p~-~~~~l~~  106 (108)
                      .+++..|+|+.+|+. |+.+.+|+.|+++.| .+++ -|++|.++.++..+.+-+++.++.+|. .|++|.+
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            345555666655544 555666666666653 3333 344555555555555555455555553 3444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=3e-06  Score=43.00  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=13.8

Q ss_pred             CCcEEeccCCcCCccccccccCCCCCCEEeecC
Q 046123           58 GSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSG   90 (108)
Q Consensus        58 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~   90 (108)
                      +|+.|++++ +.+.++|+.++++++|+++++++
T Consensus         2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccC-CCCcccCchHhCCCCCCEEEecC
Confidence            344444444 23444444444444444444444

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.18  E-value=1.7e-07  Score=70.14  Aligned_cols=92  Identities=28%  Similarity=0.443  Sum_probs=51.9

Q ss_pred             CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCC
Q 046123            4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSL   83 (108)
Q Consensus         4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L   83 (108)
                      |++|-+++ ++++.+|+.++...+|   .     .+|.+.|.+..+|+.++.+.+|+.+.+.. +.+..+|+.+..+ .|
T Consensus       145 Lkvli~sN-Nkl~~lp~~ig~~~tl---~-----~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pL  213 (722)
T KOG0532|consen  145 LKVLIVSN-NKLTSLPEEIGLLPTL---A-----HLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PL  213 (722)
T ss_pred             ceeEEEec-CccccCCcccccchhH---H-----HhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ce
Confidence            44555555 5666666666655566   6     66666666666666665555555555554 3344555544432 25


Q ss_pred             CEEeecCCCCCcccccCcCCCCCC
Q 046123           84 RTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        84 ~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      ..||++. |.+..+|-.|.+|+.|
T Consensus       214 i~lDfSc-Nkis~iPv~fr~m~~L  236 (722)
T KOG0532|consen  214 IRLDFSC-NKISYLPVDFRKMRHL  236 (722)
T ss_pred             eeeeccc-Cceeecchhhhhhhhh
Confidence            5566655 4455566555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.02  E-value=1.6e-05  Score=61.93  Aligned_cols=49  Identities=24%  Similarity=0.316  Sum_probs=23.7

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCC
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGC   91 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~   91 (108)
                      .|++++|.+..+|..+.  .+|+.|++++ +.+..+|+.+.  .+|++|++++|
T Consensus       245 ~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N  293 (754)
T PRK15370        245 EMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN  293 (754)
T ss_pred             EEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC
Confidence            44444444444443332  3455555554 34445555442  35666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.01  E-value=2.7e-06  Score=61.53  Aligned_cols=83  Identities=23%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccccc
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTIN   78 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~   78 (108)
                      ++.|+.+++++ ++++.+. .++....++   +     .|++..|++..+... |.++..|+.|++.+|+.....|.+|.
T Consensus       273 L~~L~~lnlsn-N~i~~i~~~aFe~~a~l---~-----eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  273 LPNLRKLNLSN-NKITRIEDGAFEGAAEL---Q-----ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             cccceEeccCC-Cccchhhhhhhcchhhh---h-----hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            45677888877 5677763 566667777   7     778888887766554 77788888888888544444566777


Q ss_pred             CCCCCCEEeecCCC
Q 046123           79 GLRSLRTLYLSGCS   92 (108)
Q Consensus        79 ~l~~L~~l~l~~~~   92 (108)
                      .+.+|.++++-.|.
T Consensus       344 ~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  344 TLFSLSTLNLLSNP  357 (498)
T ss_pred             ccceeeeeehccCc
Confidence            77778888776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.99  E-value=2.2e-05  Score=61.18  Aligned_cols=82  Identities=22%  Similarity=0.391  Sum_probs=51.9

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      .++.|++++ +.++.+|..+.  .+|   +     .|++++|.++.+|..+.  .+|+.|++++| .+..+|..+.  .+
T Consensus       200 ~L~~L~Ls~-N~LtsLP~~l~--~nL---~-----~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~  263 (754)
T PRK15370        200 QITTLILDN-NELKSLPENLQ--GNI---K-----TLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SA  263 (754)
T ss_pred             CCcEEEecC-CCCCcCChhhc--cCC---C-----EEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CC
Confidence            456666666 45666664332  356   6     77777777777765443  36777788774 4567776653  46


Q ss_pred             CCEEeecCCCCCcccccCc
Q 046123           83 LRTLYLSGCSKLKNVPETL  101 (108)
Q Consensus        83 L~~l~l~~~~~~~~~p~~~  101 (108)
                      |++|++++| .+..+|..+
T Consensus       264 L~~L~Ls~N-~L~~LP~~l  281 (754)
T PRK15370        264 LQSLDLFHN-KISCLPENL  281 (754)
T ss_pred             CCEEECcCC-ccCcccccc
Confidence            888888875 445667543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.96  E-value=3.6e-06  Score=60.47  Aligned_cols=86  Identities=27%  Similarity=0.453  Sum_probs=54.9

Q ss_pred             CCcEEeccCCcCCCcCCcccCCcc-ccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSS-QRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~-~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      .++.+++.+ +.+.++++...... ++   +     .+++++|.+..+|..++.+++|+.|++++ +.+.++|...+...
T Consensus       117 ~l~~L~l~~-n~i~~i~~~~~~~~~nL---~-----~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~  186 (394)
T COG4886         117 NLTSLDLDN-NNITDIPPLIGLLKSNL---K-----ELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLS  186 (394)
T ss_pred             ceeEEecCC-cccccCccccccchhhc---c-----cccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhh
Confidence            355666666 56666666555553 66   6     77777777776666667777777777776 45666666555566


Q ss_pred             CCCEEeecCCCCCccccc
Q 046123           82 SLRTLYLSGCSKLKNVPE   99 (108)
Q Consensus        82 ~L~~l~l~~~~~~~~~p~   99 (108)
                      .|+.+++++ +.+..+|.
T Consensus       187 ~L~~L~ls~-N~i~~l~~  203 (394)
T COG4886         187 NLNNLDLSG-NKISDLPP  203 (394)
T ss_pred             hhhheeccC-CccccCch
Confidence            677777776 34455554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=2.5e-07  Score=58.34  Aligned_cols=61  Identities=20%  Similarity=0.417  Sum_probs=39.0

Q ss_pred             EEEecCccccccCccccc-CCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccC
Q 046123           38 SFILEGTAIRGLPASIEL-LSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPET  100 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~  100 (108)
                      ..++++|.++++|+.|.. .+.++.+++++ +.++++|..+..++.|+.++++.|. +...|+.
T Consensus        57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~v  118 (177)
T KOG4579|consen   57 KISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRV  118 (177)
T ss_pred             EEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHH
Confidence            566777777777766543 34677777776 5577777667777777777777643 3334443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.92  E-value=2.5e-06  Score=61.31  Aligned_cols=79  Identities=28%  Similarity=0.329  Sum_probs=61.7

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      +|+.|++++ +.+..+|..+..++.|   +     .|+++.|++..+|...+..+.|+.+++++ +.+..+|..+.....
T Consensus       141 nL~~L~l~~-N~i~~l~~~~~~l~~L---~-----~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~  210 (394)
T COG4886         141 NLKELDLSD-NKIESLPSPLRNLPNL---K-----NLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSA  210 (394)
T ss_pred             hcccccccc-cchhhhhhhhhccccc---c-----ccccCCchhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhh
Confidence            578888888 6788877667778888   7     88888888888887766778888888888 567788876655666


Q ss_pred             CCEEeecCC
Q 046123           83 LRTLYLSGC   91 (108)
Q Consensus        83 L~~l~l~~~   91 (108)
                      |+++.+++|
T Consensus       211 L~~l~~~~N  219 (394)
T COG4886         211 LEELDLSNN  219 (394)
T ss_pred             hhhhhhcCC
Confidence            888888775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.91  E-value=3.1e-05  Score=60.53  Aligned_cols=16  Identities=44%  Similarity=0.717  Sum_probs=6.8

Q ss_pred             CCcEEeccCCcCCCcCC
Q 046123            3 SLKTLVLSGCLKLKKFP   19 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p   19 (108)
                      +|++|++++ +.++.+|
T Consensus       243 ~Lk~LdLs~-N~LtsLP  258 (788)
T PRK15387        243 ELRTLEVSG-NQLTSLP  258 (788)
T ss_pred             CCcEEEecC-CccCccc
Confidence            344444444 2344443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.91  E-value=2.5e-06  Score=60.20  Aligned_cols=91  Identities=25%  Similarity=0.337  Sum_probs=56.8

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCc--------------
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCK--------------   68 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~--------------   68 (108)
                      .|+.+|+++ +.++.+..++.-.+.+   +     .|+++.|++..+-. +..+++|+.|++++|.              
T Consensus       285 ~LtelDLS~-N~I~~iDESvKL~Pki---r-----~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  285 ELTELDLSG-NLITQIDESVKLAPKL---R-----RLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNI  354 (490)
T ss_pred             hhhhccccc-cchhhhhhhhhhccce---e-----EEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCE
Confidence            366777887 5677777666666777   7     77777777765543 6667777777777642              


Q ss_pred             --------CCccccccccCCCCCCEEeecCCCCCcccc--cCcCCCC
Q 046123           69 --------NLKSLPSTINGLRSLRTLYLSGCSKLKNVP--ETLGKVE  105 (108)
Q Consensus        69 --------~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p--~~~~~l~  105 (108)
                              .+..+ ++++.+.+|.++|+++|+ +..+.  ..+++++
T Consensus       355 KtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LP  399 (490)
T KOG1259|consen  355 KTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLP  399 (490)
T ss_pred             eeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhccccccc
Confidence                    11111 245567788888888853 33332  2345544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.90  E-value=3.5e-06  Score=58.42  Aligned_cols=55  Identities=16%  Similarity=0.160  Sum_probs=24.4

Q ss_pred             EEEecCcccc-----ccCcccccCCCCcEEeccCCcCCc----cccccccCCCCCCEEeecCCC
Q 046123           38 SFILEGTAIR-----GLPASIELLSGSVLLNLKDCKNLK----SLPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        38 ~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~   92 (108)
                      .+++++|.++     .++..+..+.+|+.|++++|....    .++..+...++|+++++++|.
T Consensus       141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence            5555555444     122223444455555555533221    122233334456666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.86  E-value=3.2e-07  Score=68.70  Aligned_cols=52  Identities=31%  Similarity=0.492  Sum_probs=21.6

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecC
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSG   90 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~   90 (108)
                      .+.+++|++..+|+.++...+|..++.+. +.+..+|+-++++.+|+.+.++.
T Consensus       147 vli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR  198 (722)
T KOG0532|consen  147 VLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR  198 (722)
T ss_pred             eEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh
Confidence            33444444444444444334444444443 23334444444444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.82  E-value=7.3e-06  Score=56.81  Aligned_cols=84  Identities=20%  Similarity=0.252  Sum_probs=48.3

Q ss_pred             CCCcEEeccCCcCCC-----cCCcccCCccccccccCcceeEEEecCcccc-----ccCcccccCCCCcEEeccCCcCC-
Q 046123            2 KSLKTLVLSGCLKLK-----KFPDIVGKSSQRKLQAGISSWSFILEGTAIR-----GLPASIELLSGSVLLNLKDCKNL-   70 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~-----~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-   70 (108)
                      ++|+.|++++|. ++     .++..+..+.++   +     .+++++|.+.     .++..+..+++|+.+++++|... 
T Consensus       137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L---~-----~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         137 PALEKLVLGRNR-LEGASCEALAKALRANRDL---K-----ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             CCceEEEcCCCc-CCchHHHHHHHHHHhCCCc---C-----EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence            456777777743 33     122333444566   6     7777777665     12333445567788888775422 


Q ss_pred             ---ccccccccCCCCCCEEeecCCCCC
Q 046123           71 ---KSLPSTINGLRSLRTLYLSGCSKL   94 (108)
Q Consensus        71 ---~~lp~~~~~l~~L~~l~l~~~~~~   94 (108)
                         ..+...+..+++|+++++++|...
T Consensus       208 ~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         208 EGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHHhcccCCCCEEecCCCcCc
Confidence               123344556677888888776543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=3.3e-06  Score=53.35  Aligned_cols=78  Identities=24%  Similarity=0.286  Sum_probs=65.0

Q ss_pred             CcEEeccCCcCCCcCCcccCC-ccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            4 LKTLVLSGCLKLKKFPDIVGK-SSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         4 L~~L~l~~~~~~~~~p~~~~~-~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      |+..++++ +.++++|+.+.. .+..   +     .+++++|.++.+|..+..++.|+.++++. +.+...|..+..+.+
T Consensus        55 l~~i~ls~-N~fk~fp~kft~kf~t~---t-----~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~  124 (177)
T KOG4579|consen   55 LTKISLSD-NGFKKFPKKFTIKFPTA---T-----TLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIK  124 (177)
T ss_pred             EEEEeccc-chhhhCCHHHhhccchh---h-----hhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHh
Confidence            55678888 689999876643 4567   7     88999999999999999999999999998 557778887877889


Q ss_pred             CCEEeecCC
Q 046123           83 LRTLYLSGC   91 (108)
Q Consensus        83 L~~l~l~~~   91 (108)
                      +.+|+..+|
T Consensus       125 l~~Lds~~n  133 (177)
T KOG4579|consen  125 LDMLDSPEN  133 (177)
T ss_pred             HHHhcCCCC
Confidence            999988874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.50  E-value=3.7e-05  Score=54.45  Aligned_cols=73  Identities=22%  Similarity=0.307  Sum_probs=54.9

Q ss_pred             CCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCccc---cc
Q 046123           23 GKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNV---PE   99 (108)
Q Consensus        23 ~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~---p~   99 (108)
                      ..++.|   .     .+|+++|.|+.+-++..-.+.++.|+++. +.+..... +..+++|+.+|+++|. +..+   ..
T Consensus       281 dTWq~L---t-----elDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~  349 (490)
T KOG1259|consen  281 DTWQEL---T-----ELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHL  349 (490)
T ss_pred             chHhhh---h-----hccccccchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeecccch-hHhhhhhHh
Confidence            445667   7     89999999999988888899999999999 45655544 7778999999999963 3333   23


Q ss_pred             CcCCCCC
Q 046123          100 TLGKVES  106 (108)
Q Consensus       100 ~~~~l~~  106 (108)
                      .+++.+.
T Consensus       350 KLGNIKt  356 (490)
T KOG1259|consen  350 KLGNIKT  356 (490)
T ss_pred             hhcCEee
Confidence            4555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.45  E-value=0.00021  Score=52.37  Aligned_cols=12  Identities=67%  Similarity=1.113  Sum_probs=7.2

Q ss_pred             CCCEEeecCCCC
Q 046123           82 SLRTLYLSGCSK   93 (108)
Q Consensus        82 ~L~~l~l~~~~~   93 (108)
                      +|++|++++|..
T Consensus       157 SLk~L~Is~c~~  168 (426)
T PRK15386        157 SLKTLSLTGCSN  168 (426)
T ss_pred             cccEEEecCCCc
Confidence            566666666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.31  E-value=0.00012  Score=53.33  Aligned_cols=79  Identities=25%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++++.+++.+ +.++.+...+..+.+|   +     ++++++|.|..+.. +..+..|+.|++.+ +.+..+.. +..+.
T Consensus        95 ~~l~~l~l~~-n~i~~i~~~l~~~~~L---~-----~L~ls~N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~-~~~l~  162 (414)
T KOG0531|consen   95 KSLEALDLYD-NKIEKIENLLSSLVNL---Q-----VLDLSFNKITKLEG-LSTLTLLKELNLSG-NLISDISG-LESLK  162 (414)
T ss_pred             cceeeeeccc-cchhhcccchhhhhcc---h-----heeccccccccccc-hhhccchhhheecc-CcchhccC-Cccch
Confidence            5677778877 5677765545667777   7     88888888876543 56666688888887 44555543 45567


Q ss_pred             CCCEEeecCCC
Q 046123           82 SLRTLYLSGCS   92 (108)
Q Consensus        82 ~L~~l~l~~~~   92 (108)
                      .|+.+++++|.
T Consensus       163 ~L~~l~l~~n~  173 (414)
T KOG0531|consen  163 SLKLLDLSYNR  173 (414)
T ss_pred             hhhcccCCcch
Confidence            77778887753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.30  E-value=1.5e-05  Score=61.74  Aligned_cols=77  Identities=29%  Similarity=0.290  Sum_probs=56.9

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +.++.|++++ |++.++. .+..+.+|   +     .||+++|++..+|.- ..++. |+.|.+++ +.+.++ .++.++
T Consensus       187 ~ale~LnLsh-Nk~~~v~-~Lr~l~~L---k-----hLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL-~gie~L  253 (1096)
T KOG1859|consen  187 PALESLNLSH-NKFTKVD-NLRRLPKL---K-----HLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTL-RGIENL  253 (1096)
T ss_pred             HHhhhhccch-hhhhhhH-HHHhcccc---c-----ccccccchhccccccchhhhh-heeeeecc-cHHHhh-hhHHhh
Confidence            3567888888 5677665 56677888   8     889999988877754 44554 88888887 455555 347778


Q ss_pred             CCCCEEeecCC
Q 046123           81 RSLRTLYLSGC   91 (108)
Q Consensus        81 ~~L~~l~l~~~   91 (108)
                      ++|+.||+++|
T Consensus       254 ksL~~LDlsyN  264 (1096)
T KOG1859|consen  254 KSLYGLDLSYN  264 (1096)
T ss_pred             hhhhccchhHh
Confidence            88888888885

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.19  E-value=0.00053  Score=50.26  Aligned_cols=82  Identities=26%  Similarity=0.551  Sum_probs=48.1

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCc-cccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGT-AIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ..++.|++++| .++.+|..   ..+|   +     .|.++++ .+..+|..+.  .+|+.|.+.+|..+..+|+.    
T Consensus        52 ~~l~~L~Is~c-~L~sLP~L---P~sL---t-----sL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s----  113 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPVL---PNEL---T-----EITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES----  113 (426)
T ss_pred             cCCCEEEeCCC-CCcccCCC---CCCC---c-----EEEccCCCCcccCCchhh--hhhhheEccCcccccccccc----
Confidence            35677888875 67777632   2345   6     7777653 4555665442  57788888877666666654    


Q ss_pred             CCCCEEeecCC--CCCcccccCcCC
Q 046123           81 RSLRTLYLSGC--SKLKNVPETLGK  103 (108)
Q Consensus        81 ~~L~~l~l~~~--~~~~~~p~~~~~  103 (108)
                        |++|++..+  ..+..+|..+..
T Consensus       114 --Le~L~L~~n~~~~L~~LPssLk~  136 (426)
T PRK15386        114 --VRSLEIKGSATDSIKNVPNGLTS  136 (426)
T ss_pred             --cceEEeCCCCCcccccCcchHhh
Confidence              455555442  224556654433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.07  E-value=0.00022  Score=55.37  Aligned_cols=80  Identities=26%  Similarity=0.421  Sum_probs=50.2

Q ss_pred             CCCCcEEeccCCcCC--CcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccc--cc
Q 046123            1 MKSLKTLVLSGCLKL--KKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLP--ST   76 (108)
Q Consensus         1 l~~L~~L~l~~~~~~--~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp--~~   76 (108)
                      +|+|++|.+.| ...  .++-....++++|   .     .||+++++++.+ .+++.+++|+.|.+.+- .+....  ..
T Consensus       147 LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL---~-----sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~  215 (699)
T KOG3665|consen  147 LPSLRSLVISG-RQFDNDDFSQLCASFPNL---R-----SLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLID  215 (699)
T ss_pred             CcccceEEecC-ceecchhHHHHhhccCcc---c-----eeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHH
Confidence            45667777666 222  1122333456677   7     888888888766 55778888888777652 222222  24


Q ss_pred             ccCCCCCCEEeecCC
Q 046123           77 INGLRSLRTLYLSGC   91 (108)
Q Consensus        77 ~~~l~~L~~l~l~~~   91 (108)
                      ++++++|++||+|..
T Consensus       216 LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRD  230 (699)
T ss_pred             HhcccCCCeeecccc
Confidence            677888888888863

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.02  E-value=0.00047  Score=29.60  Aligned_cols=17  Identities=24%  Similarity=0.495  Sum_probs=9.6

Q ss_pred             EEEecCccccccCcccc
Q 046123           38 SFILEGTAIRGLPASIE   54 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~   54 (108)
                      +||+++|+++.+|+.|+
T Consensus         4 ~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    4 YLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             EEEETSSEESEEGTTTT
T ss_pred             EEECCCCcCEeCChhhc
Confidence            56666666555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00037  Score=51.21  Aligned_cols=84  Identities=18%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC--cccccCCCCcEEeccCCcCCcc--cccc
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP--ASIELLSGSVLLNLKDCKNLKS--LPST   76 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~--lp~~   76 (108)
                      +++|+.|++.+|+.+........-+..|   +     .||+++|.+.+.+  ...+.++.|..|++++|. +.+  .|++
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L---~-----~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~  291 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTL---Q-----ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDV  291 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHH---h-----hccccCCcccccccccccccccchhhhhccccC-cchhcCCCc
Confidence            3566677777753222211112234456   6     8888888887766  347778888888888754 333  3443


Q ss_pred             -----ccCCCCCCEEeecCCCC
Q 046123           77 -----INGLRSLRTLYLSGCSK   93 (108)
Q Consensus        77 -----~~~l~~L~~l~l~~~~~   93 (108)
                           .....+|++|++..|+.
T Consensus       292 ~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  292 ESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             cchhhhcccccceeeecccCcc
Confidence                 23457889999888543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.60  E-value=0.00084  Score=48.95  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=58.9

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLR   84 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~   84 (108)
                      +.+.+.. +.++..-..+..+.++   .     .+++..|.+..+...+..+.+|+.+++++ +.+..+.. +..+..|+
T Consensus        75 ~~l~l~~-n~i~~~~~~l~~~~~l---~-----~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~  143 (414)
T KOG0531|consen   75 KELNLRQ-NLIAKILNHLSKLKSL---E-----ALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLK  143 (414)
T ss_pred             Hhhccch-hhhhhhhcccccccce---e-----eeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchh
Confidence            3444555 4455533445667778   7     99999999998876688899999999999 56777644 56677799


Q ss_pred             EEeecCCCCCcccc
Q 046123           85 TLYLSGCSKLKNVP   98 (108)
Q Consensus        85 ~l~l~~~~~~~~~p   98 (108)
                      .|++++| .+..+.
T Consensus       144 ~L~l~~N-~i~~~~  156 (414)
T KOG0531|consen  144 ELNLSGN-LISDIS  156 (414)
T ss_pred             hheeccC-cchhcc
Confidence            9999995 344443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.54  E-value=0.0073  Score=40.56  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccC-CCCcEEeccCCcCCccccc--cccCC
Q 046123            4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELL-SGSVLLNLKDCKNLKSLPS--TINGL   80 (108)
Q Consensus         4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l-~~L~~L~l~~~~~~~~lp~--~~~~l   80 (108)
                      ...+|+++| .+..++ .+..+..|   .     +|.+..|+|..+.+.+..+ ++|+.|.+.+ +.++++-+  .+..+
T Consensus        44 ~d~iDLtdN-dl~~l~-~lp~l~rL---~-----tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~  112 (233)
T KOG1644|consen   44 FDAIDLTDN-DLRKLD-NLPHLPRL---H-----TLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASC  112 (233)
T ss_pred             cceeccccc-chhhcc-cCCCcccc---c-----eEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccC
Confidence            445667763 344332 23556667   7     8888888888877766554 6688888887 44555432  34556


Q ss_pred             CCCCEEeecCCC
Q 046123           81 RSLRTLYLSGCS   92 (108)
Q Consensus        81 ~~L~~l~l~~~~   92 (108)
                      ++|+++.+-+|.
T Consensus       113 p~L~~Ltll~Np  124 (233)
T KOG1644|consen  113 PKLEYLTLLGNP  124 (233)
T ss_pred             CccceeeecCCc
Confidence            777777776653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.50  E-value=0.0018  Score=27.75  Aligned_cols=20  Identities=35%  Similarity=0.604  Sum_probs=9.8

Q ss_pred             CCEEeecCCCCCcccccCcCC
Q 046123           83 LRTLYLSGCSKLKNVPETLGK  103 (108)
Q Consensus        83 L~~l~l~~~~~~~~~p~~~~~  103 (108)
                      |++|++++|+ +..+|..|++
T Consensus         2 L~~Ldls~n~-l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNN-LTSIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSE-ESEEGTTTTT
T ss_pred             ccEEECCCCc-CEeCChhhcC
Confidence            4555555543 2355554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.35  E-value=0.0069  Score=40.66  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=58.3

Q ss_pred             CCCcEEeccCCcCCCcCCcccC-CccccccccCcceeEEEecCccccccCc--ccccCCCCcEEeccCCcCCccccc---
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVG-KSSQRKLQAGISSWSFILEGTAIRGLPA--SIELLSGSVLLNLKDCKNLKSLPS---   75 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~-~~~~L~~~~~~~~~~l~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~lp~---   75 (108)
                      +.|.+|.+.. +.++.+.+.+. .++.+   .     .|.+++|.+..+.+  ....++.|+.|.+-+|+ +...+.   
T Consensus        64 ~rL~tLll~n-NrIt~I~p~L~~~~p~l---~-----~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~  133 (233)
T KOG1644|consen   64 PRLHTLLLNN-NRITRIDPDLDTFLPNL---K-----TLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRL  133 (233)
T ss_pred             cccceEEecC-Ccceeeccchhhhcccc---c-----eEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCcee
Confidence            5688899988 67888854444 45678   8     99999999886543  36778899999998853 444433   


Q ss_pred             -cccCCCCCCEEeecC
Q 046123           76 -TINGLRSLRTLYLSG   90 (108)
Q Consensus        76 -~~~~l~~L~~l~l~~   90 (108)
                       .+..+++|++||.+.
T Consensus       134 yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  134 YVLYKLPSLRTLDFQK  149 (233)
T ss_pred             EEEEecCcceEeehhh
Confidence             356788999999875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.0013  Score=48.42  Aligned_cols=14  Identities=36%  Similarity=0.411  Sum_probs=7.5

Q ss_pred             CCCCCEEeecCCCC
Q 046123           80 LRSLRTLYLSGCSK   93 (108)
Q Consensus        80 l~~L~~l~l~~~~~   93 (108)
                      ++.|+.||+++|+.
T Consensus       245 ~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  245 LQTLQELDLSNNNL  258 (505)
T ss_pred             hhHHhhccccCCcc
Confidence            34556666666443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.43  E-value=0.084  Score=31.69  Aligned_cols=49  Identities=12%  Similarity=0.226  Sum_probs=18.5

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeec
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLS   89 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~   89 (108)
                      .+.+..+ +..++.. +..+..++.+.+.+  .+..++. .|..+.+++.+++.
T Consensus        39 ~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   39 SINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             EEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred             ccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccC
Confidence            5555443 4434332 44444555555543  2222222 33334455555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.28  E-value=0.01  Score=40.96  Aligned_cols=53  Identities=30%  Similarity=0.414  Sum_probs=29.9

Q ss_pred             EEEecCc--ccc-ccCcccccCCCCcEEeccCCcCCcccccc---ccCCCCCCEEeecCCC
Q 046123           38 SFILEGT--AIR-GLPASIELLSGSVLLNLKDCKNLKSLPST---INGLRSLRTLYLSGCS   92 (108)
Q Consensus        38 ~l~l~~~--~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~---~~~l~~L~~l~l~~~~   92 (108)
                      .|.++.|  +++ .++.....+++|+++++++| .++. +++   ...+.+|..|++.+|.
T Consensus        69 kL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   69 KLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             hhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhhhhcccCC
Confidence            7777777  444 44444555577777777773 3433 221   3344556666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.10  E-value=0.0017  Score=50.79  Aligned_cols=72  Identities=18%  Similarity=0.194  Sum_probs=43.6

Q ss_pred             eccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccc-cccCCCCCCEE
Q 046123            8 VLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTL   86 (108)
Q Consensus         8 ~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l   86 (108)
                      +.++ |.+..+..++.-++.+   +     .|+++.|++.++. .+..+.+|+.||++. +.+..+|. +..++. |..|
T Consensus       170 ~fsy-N~L~~mD~SLqll~al---e-----~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L  237 (1096)
T KOG1859|consen  170 SFSY-NRLVLMDESLQLLPAL---E-----SLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLL  237 (1096)
T ss_pred             hcch-hhHHhHHHHHHHHHHh---h-----hhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heee
Confidence            3344 3444444455555556   6     7777777777664 567777777777777 55666654 222333 7777


Q ss_pred             eecCC
Q 046123           87 YLSGC   91 (108)
Q Consensus        87 ~l~~~   91 (108)
                      .+++|
T Consensus       238 ~lrnN  242 (1096)
T KOG1859|consen  238 NLRNN  242 (1096)
T ss_pred             eeccc
Confidence            77764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.01  E-value=0.023  Score=44.48  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC--cccccCCCCcEEeccCCcCCccc-----
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP--ASIELLSGSVLLNLKDCKNLKSL-----   73 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~l-----   73 (108)
                      +++|..||++++ .++.+ ..++.+.+|   +     .|.+.+=.+....  ..+..+++|+.||++........     
T Consensus       172 FpNL~sLDIS~T-nI~nl-~GIS~LknL---q-----~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~q  241 (699)
T KOG3665|consen  172 FPNLRSLDISGT-NISNL-SGISRLKNL---Q-----VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQ  241 (699)
T ss_pred             cCccceeecCCC-CccCc-HHHhccccH---H-----HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHH
Confidence            478999999994 57766 556778888   8     5544443333211  23678999999999874322211     


Q ss_pred             -cccccCCCCCCEEeecCCC
Q 046123           74 -PSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        74 -p~~~~~l~~L~~l~l~~~~   92 (108)
                       -+.-..++.|+.||.++..
T Consensus       242 Ylec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  242 YLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HHHhcccCccccEEecCCcc
Confidence             1223458899999998743

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.99  E-value=0.019  Score=39.60  Aligned_cols=15  Identities=27%  Similarity=0.173  Sum_probs=7.0

Q ss_pred             cccCCCCcEEeccCC
Q 046123           53 IELLSGSVLLNLKDC   67 (108)
Q Consensus        53 ~~~l~~L~~L~l~~~   67 (108)
                      +..+++|+.|.++.|
T Consensus        61 ~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDN   75 (260)
T ss_pred             CCCcchhhhhcccCC
Confidence            334444555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.80  E-value=0.23  Score=29.73  Aligned_cols=90  Identities=9%  Similarity=0.242  Sum_probs=43.6

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~   79 (108)
                      +++.+.+.. + +..++ ..+..+..+   +     .+.+.. .+..++.. +..+++++.+.+.. + +..++. .+.+
T Consensus        36 ~l~~i~~~~-~-~~~i~~~~F~~~~~l---~-----~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~f~~  102 (129)
T PF13306_consen   36 SLKSINFPN-N-LTSIGDNAFSNCKSL---E-----SITFPN-NLKSIGDNAFSNCTNLKNIDIPS-N-ITEIGSSSFSN  102 (129)
T ss_dssp             T-SEEEESS-T-TSCE-TTTTTT-TT----E-----EEEETS-TT-EE-TTTTTT-TTECEEEETT-T--BEEHTTTTTT
T ss_pred             ccccccccc-c-ccccceeeeeccccc---c-----cccccc-cccccccccccccccccccccCc-c-ccEEchhhhcC
Confidence            566666655 2 66655 344555567   7     888865 55555544 77789999999876 3 555554 5666


Q ss_pred             CCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVP-ETLGKVESLE  108 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~  108 (108)
                      . +++.+.+.. + ...++ ..|.+..+|+
T Consensus       103 ~-~l~~i~~~~-~-~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  103 C-NLKEINIPS-N-ITKIEENAFKNCTKLK  129 (129)
T ss_dssp             --T--EEE-TT-B--SS----GGG------
T ss_pred             C-CceEEEECC-C-ccEECCccccccccCC
Confidence            5 888888765 2 33333 4577766654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=0.0021  Score=45.22  Aligned_cols=65  Identities=23%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             CCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccc--cccCCCCCCEEeecCCCCCccc
Q 046123           23 GKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPS--TINGLRSLRTLYLSGCSKLKNV   97 (108)
Q Consensus        23 ~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~l~l~~~~~~~~~   97 (108)
                      ..|+.|   .     +|.++-|.|+++.+ +..|++|+.|.|.. +.+..+.+  .+.++++|++|.+..|.....-
T Consensus        38 ~kMp~l---E-----VLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~a  104 (388)
T KOG2123|consen   38 EKMPLL---E-----VLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEA  104 (388)
T ss_pred             Hhcccc---e-----eEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCccccc
Confidence            456677   7     88888888886643 77888888888877 45555543  4567788888888776655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.14  E-value=0.0021  Score=45.25  Aligned_cols=77  Identities=19%  Similarity=0.194  Sum_probs=58.0

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc--cccCCCCcEEeccCCcCCcccccc--
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS--IELLSGSVLLNLKDCKNLKSLPST--   76 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~lp~~--   76 (108)
                      |+.|++|.++- |.+..+.+ +..+..|   +     .+++..|.|.++.+-  +.++++|+.|-+.+|+....-+..  
T Consensus        40 Mp~lEVLsLSv-NkIssL~p-l~rCtrL---k-----ElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   40 MPLLEVLSLSV-NKISSLAP-LQRCTRL---K-----ELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             cccceeEEeec-cccccchh-HHHHHHH---H-----HHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            57889999998 56776643 4678888   8     999999999987654  778999999999998766665542  


Q ss_pred             ---ccCCCCCCEEe
Q 046123           77 ---INGLRSLRTLY   87 (108)
Q Consensus        77 ---~~~l~~L~~l~   87 (108)
                         +..+++|+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence               34466666654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.58  E-value=0.064  Score=21.36  Aligned_cols=10  Identities=10%  Similarity=0.228  Sum_probs=3.4

Q ss_pred             EEEecCcccc
Q 046123           38 SFILEGTAIR   47 (108)
Q Consensus        38 ~l~l~~~~~~   47 (108)
                      .|++++|++.
T Consensus         5 ~L~l~~n~L~   14 (17)
T PF13504_consen    5 TLDLSNNRLT   14 (17)
T ss_dssp             EEEETSS--S
T ss_pred             EEECCCCCCC
Confidence            4444444433

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.38  E-value=0.011  Score=42.15  Aligned_cols=39  Identities=28%  Similarity=0.261  Sum_probs=22.5

Q ss_pred             ccCCCCcEEeccCCcCCcc-ccccccCCCCCCEEeecCCC
Q 046123           54 ELLSGSVLLNLKDCKNLKS-LPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        54 ~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~l~l~~~~   92 (108)
                      .+++++..||+++|..++. .-..|..++.|+++.++.|.
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            4567777777777654432 11134455566666666653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.80  E-value=0.1  Score=22.82  Aligned_cols=15  Identities=20%  Similarity=0.415  Sum_probs=7.6

Q ss_pred             EEEecCccccccCcc
Q 046123           38 SFILEGTAIRGLPAS   52 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~   52 (108)
                      .|++++|+++.+|+.
T Consensus         6 ~L~L~~N~l~~lp~~   20 (26)
T smart00369        6 ELDLSNNQLSSLPPG   20 (26)
T ss_pred             EEECCCCcCCcCCHH
Confidence            555555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.80  E-value=0.1  Score=22.82  Aligned_cols=15  Identities=20%  Similarity=0.415  Sum_probs=7.6

Q ss_pred             EEEecCccccccCcc
Q 046123           38 SFILEGTAIRGLPAS   52 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~   52 (108)
                      .|++++|+++.+|+.
T Consensus         6 ~L~L~~N~l~~lp~~   20 (26)
T smart00370        6 ELDLSNNQLSSLPPG   20 (26)
T ss_pred             EEECCCCcCCcCCHH
Confidence            555555555555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.43  E-value=0.0023  Score=44.04  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=29.6

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCc
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETL  101 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~  101 (108)
                      .+|++.|++..+-..+..++.+..++++. +.+..+|..++....++++++-. +.....|..+
T Consensus        46 vld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~  107 (326)
T KOG0473|consen   46 VLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQ  107 (326)
T ss_pred             eehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccc
Confidence            55555555554444455555555555554 34444555444444444444333 2233344433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=0.039  Score=39.43  Aligned_cols=30  Identities=30%  Similarity=0.264  Sum_probs=15.4

Q ss_pred             EEEecCcccccc---CcccccCCCCcEEeccCC
Q 046123           38 SFILEGTAIRGL---PASIELLSGSVLLNLKDC   67 (108)
Q Consensus        38 ~l~l~~~~~~~~---p~~~~~l~~L~~L~l~~~   67 (108)
                      .+|+++|.++..   ..-..++++|++|+++.|
T Consensus        75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N  107 (418)
T KOG2982|consen   75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCN  107 (418)
T ss_pred             hhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence            555666655422   222445566666666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=92.23  E-value=0.097  Score=37.81  Aligned_cols=41  Identities=24%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             cccCCCCcEEeccCCcCCcc----ccccccCCCCCCEEeecCCCC
Q 046123           53 IELLSGSVLLNLKDCKNLKS----LPSTINGLRSLRTLYLSGCSK   93 (108)
Q Consensus        53 ~~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~l~l~~~~~   93 (108)
                      +..+++|+.|++.+|....+    +-.+++.+++|+.+++++|..
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            55666677777766543221    233455556666666666643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.40  E-value=0.0027  Score=43.66  Aligned_cols=79  Identities=14%  Similarity=0.041  Sum_probs=52.5

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLR   84 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~   84 (108)
                      +.||++. +.+-.+...++.++.+   .     .++++.|++.-.|..++....+..+++.. ++.+..|.+++..++++
T Consensus        45 tvld~~s-~r~vn~~~n~s~~t~~---~-----rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   45 TVLDLSS-NRLVNLGKNFSILTRL---V-----RLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             eeehhhh-hHHHhhccchHHHHHH---H-----HHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcc
Confidence            3455554 3333333334444444   4     67788888887888887777777777766 56777888888888888


Q ss_pred             EEeecCCCC
Q 046123           85 TLYLSGCSK   93 (108)
Q Consensus        85 ~l~l~~~~~   93 (108)
                      +++...+.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            888776543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.54  E-value=0.016  Score=41.38  Aligned_cols=81  Identities=26%  Similarity=0.276  Sum_probs=47.0

Q ss_pred             CcEEeccCCcCCCcC--CcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccc--ccc
Q 046123            4 LKTLVLSGCLKLKKF--PDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPS--TIN   78 (108)
Q Consensus         4 L~~L~l~~~~~~~~~--p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~--~~~   78 (108)
                      ++.+|++. ..++.-  -..++.+.+|   +     .+.+.++++. .+-..+.+-.+|..++++.|+.+.+.-.  -+.
T Consensus       187 lq~lDLS~-s~it~stl~~iLs~C~kL---k-----~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~  257 (419)
T KOG2120|consen  187 LQHLDLSN-SVITVSTLHGILSQCSKL---K-----NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS  257 (419)
T ss_pred             hHHhhcch-hheeHHHHHHHHHHHHhh---h-----hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence            55666665 333321  1233455666   6     6666666666 4444566667777777777765554322  245


Q ss_pred             CCCCCCEEeecCCCC
Q 046123           79 GLRSLRTLYLSGCSK   93 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~   93 (108)
                      +++.|..|+++.|..
T Consensus       258 scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFL  272 (419)
T ss_pred             hhhhHhhcCchHhhc
Confidence            666777777776643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.79  E-value=0.16  Score=34.17  Aligned_cols=59  Identities=22%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             EEEecCcccccc-CcccccCCCCcEEeccCCcCCcccc-cccc-CCCCCCEEeecCCCCCcc
Q 046123           38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLP-STIN-GLRSLRTLYLSGCSKLKN   96 (108)
Q Consensus        38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~-~l~~L~~l~l~~~~~~~~   96 (108)
                      .+|.+++.|... -+.+..+..++.+.+.+|..+.+.= +.++ -.++|+.|++++|.++++
T Consensus       105 aVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  105 AVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             EEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            555566555522 2335555666666666654443210 1122 234677777777765554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.67  E-value=0.69  Score=20.14  Aligned_cols=17  Identities=35%  Similarity=0.673  Sum_probs=12.4

Q ss_pred             CCCCcEEeccCCcCCCc
Q 046123            1 MKSLKTLVLSGCLKLKK   17 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~   17 (108)
                      +++|+.|++++|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            36788888888876665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=85.56  E-value=0.41  Score=34.73  Aligned_cols=58  Identities=14%  Similarity=0.082  Sum_probs=39.2

Q ss_pred             EEEecCccccc-----cCcccccCCCCcEEeccCCcCCc----cccccccCCCCCCEEeecCCCCCc
Q 046123           38 SFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK----SLPSTINGLRSLRTLYLSGCSKLK   95 (108)
Q Consensus        38 ~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~~~~   95 (108)
                      +++.+.|++..     +...+...+.|+.+.+..|....    -+-.++..+++|++||+++|.+..
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            88888777653     23336677788888887743221    123357788999999999986543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=83.04  E-value=0.75  Score=33.46  Aligned_cols=57  Identities=33%  Similarity=0.466  Sum_probs=31.1

Q ss_pred             EEEecCcc-ccccC-cc-cccCCCCcEEeccCCcCCcc--ccccccCCCCCCEEeecCCCCC
Q 046123           38 SFILEGTA-IRGLP-AS-IELLSGSVLLNLKDCKNLKS--LPSTINGLRSLRTLYLSGCSKL   94 (108)
Q Consensus        38 ~l~l~~~~-~~~~p-~~-~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~l~l~~~~~~   94 (108)
                      .++++++. ++..- .. ...+++|+.+.+..|..+..  +-.....+++|++++++.|..+
T Consensus       247 ~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  247 SLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             ccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            66666655 43221 11 22367788887766654322  2222334566888888876554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.76  E-value=1.3  Score=31.92  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             CcEEeccCCcCCCcCCc---ccCCccccccccCcceeEEEecCccccccCccc-ccCCCCcEEeccCCcCC-cccccccc
Q 046123            4 LKTLVLSGCLKLKKFPD---IVGKSSQRKLQAGISSWSFILEGTAIRGLPASI-ELLSGSVLLNLKDCKNL-KSLPSTIN   78 (108)
Q Consensus         4 L~~L~l~~~~~~~~~p~---~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~-~~lp~~~~   78 (108)
                      .+.+|+.+ +.+.+..+   .+..++.+   +     .|+++.|.+.+..... -..++|+.+.+.+...- ........
T Consensus        73 v~elDL~~-N~iSdWseI~~ile~lP~l---~-----~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   73 VKELDLTG-NLISDWSEIGAILEQLPAL---T-----TLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             hhhhhccc-chhccHHHHHHHHhcCccc---e-----EeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence            34566666 45554432   23456666   6     7777777666433332 24566677766652211 11222334


Q ss_pred             CCCCCCEEeecCC
Q 046123           79 GLRSLRTLYLSGC   91 (108)
Q Consensus        79 ~l~~L~~l~l~~~   91 (108)
                      .++.++.++++.|
T Consensus       144 ~lP~vtelHmS~N  156 (418)
T KOG2982|consen  144 DLPKVTELHMSDN  156 (418)
T ss_pred             cchhhhhhhhccc
Confidence            4555555555554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.49  E-value=1  Score=20.05  Aligned_cols=14  Identities=14%  Similarity=0.399  Sum_probs=7.1

Q ss_pred             EEEecCccccccCc
Q 046123           38 SFILEGTAIRGLPA   51 (108)
Q Consensus        38 ~l~l~~~~~~~~p~   51 (108)
                      .|++++|+++++|+
T Consensus         6 ~L~vs~N~Lt~LPe   19 (26)
T smart00364        6 ELNVSNNQLTSLPE   19 (26)
T ss_pred             eeecCCCccccCcc
Confidence            45555555555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.18  E-value=0.14  Score=34.38  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=25.6

Q ss_pred             cCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecC
Q 046123           55 LLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSG   90 (108)
Q Consensus        55 ~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~   90 (108)
                      ..++|+.|++++|+.+++.- ..+..+++|+.+.+.+
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            34789999999998887642 3456667777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-05

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 1   MKSLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGS 59
           +  L+ L +  C +L + P+ +    +  + Q  ++  S  LE T IR LPASI  L   
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208
Query: 60  VLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLG 102
             L +++   L +L   I+ L  L  L L GC+ L+N P   G
Sbjct: 209 KSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
                 L L     L +FPD   + S   LQ         ++   +  LP +++  +G  
Sbjct: 80  QPGRVALELRSV-PLPQFPDQAFRLS--HLQ------HMTIDAAGLMELPDTMQQFAGLE 130

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
            L L     L++LP++I  L  LR L +  C +L  +PE L   ++  
Sbjct: 131 TLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEG-TAIRGLPASIELLSGS 59
           +++LK+L +     L      +    +  L+         L G TA+R  P      +  
Sbjct: 205 LQNLKSLKIRNS-PLSALGPAIHHLPK--LE------ELDLRGCTALRNYPPIFGGRAPL 255

Query: 60  VLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
             L LKDC NL +LP  I+ L  L  L L GC  L  +P  + ++ +  
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 16/122 (13%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVG--KSSQRKLQAGISSWS----------FILEGTAIRG 48
               + L   G   L+ + D++   +      +    S                G A++ 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 49  LPASIELLSGSVL--LNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVES 106
               +E  +      L L+    L   P     L  L+ + +     L  +P+T+ +   
Sbjct: 71  TADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAG 128

Query: 107 LE 108
           LE
Sbjct: 129 LE 130

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGK-SSQRKLQAGISSWSFILEGTAIRGLPASIELLSGS 59
           +  L+ L L GC  L+ +P I G  +  ++L         + + + +  LP  I  L+  
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRL--------ILKDCSNLLTLPLDIHRLTQL 279

Query: 60  VLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETL 101
             L+L+ C NL  LPS I  L +   + +        + +  
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL-QAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 19/117 (16%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           +  L+ + +     L + PD + +     L+      +  L    +R LPASI  L+   
Sbjct: 103 LSHLQHMTIDAA-GLMELPDTMQQ--FAGLE------TLTLARNPLRALPASIASLNRLR 153

Query: 61  LLNLKDCKNLKSLPSTI---------NGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
            L+++ C  L  LP  +          GL +L++L L   + ++++P ++  +++L+
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLK 209

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 24/107 (22%)

Query: 2   KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVL 61
             L+ L +  C +L + P+ +  +                            + L     
Sbjct: 150 NRLRELSIRACPELTELPEPLASTD----------------------ASGEHQGLVNLQS 187

Query: 62  LNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
           L L+    ++SLP++I  L++L++L +     L  +   +  +  LE
Sbjct: 188 LRLEWTG-IRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLE 232

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 6e-07
 Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 41  LEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPET 100
              +       +++        N    K  ++   + + L+ L  + L  C  +  +P+ 
Sbjct: 455 FANSPFTYDNIAVDWE----DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 101 LGKVESLE 108
           L  +  L+
Sbjct: 511 LYDLPELQ 518

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 7e-05
 Identities = 13/117 (11%), Positives = 30/117 (25%), Gaps = 21/117 (17%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
           +  L+ +  +           V         A                   S   L    
Sbjct: 447 LTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYE-----------NEELSWSNLKDLT 494

Query: 61  LLNLKDCKNLKSLPSTINGLRSLRTLYLSG---------CSKLKNVPETLGKVESLE 108
            + L +C N+  LP  +  L  L++L ++           +    + +       ++
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 14/107 (13%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASI------E 54
              L T+ L    KL    D    ++   L       +  +        P         +
Sbjct: 727 TYLLTTIDLRFN-KLTSLSDDFRATTLPYLS------NMDVSYNCFSSFPTQPLNSSQLK 779

Query: 55  LLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETL 101
                   + +  + L+  P+ I    SL  L +     ++ V E L
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 10/116 (8%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
              + T++LS    +   P+   K      +      +  L    +  L       +   
Sbjct: 696 GSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 61  L--LNLKDCKNLKSLPSTINGLRSLRTLYL------SGCSKLKNVPETLGKVESLE 108
           L  +++       S P+       L+   +       G   L+  P  +    SL 
Sbjct: 755 LSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 8/57 (14%), Positives = 21/57 (36%)

Query: 52  SIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
           +  +       N +  +  K+     + L+ L  + +  C  L  +P  L  +  ++
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 14/107 (13%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASI------E 54
              L ++ L    KL K  D    ++   L          L   +    P         +
Sbjct: 487 TYLLTSIDLRFN-KLTKLSDDFRATTLPYLV------GIDLSYNSFSKFPTQPLNSSTLK 539

Query: 55  LLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETL 101
                   + +  + L+  P  I    SL  L +     ++ V E +
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI 585

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 17/94 (18%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIE----LL 56
             SL+ L +    +L   P++        L+      +  +    +  LPA         
Sbjct: 159 PTSLEVLSVRNN-QLTFLPELPES-----LE------ALDVSTNLLESLPAVPVRNHHSE 206

Query: 57  SGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSG 90
              +    ++ + +  +P  I  L    T+ L  
Sbjct: 207 ETEIFFRCRENR-ITHIPENILSLDPTCTIILED 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.47
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.41
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.39
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.38
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.38
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.37
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.36
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.36
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.36
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.35
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.34
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.33
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.33
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.33
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.31
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.31
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.3
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.29
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.28
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.2
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.1
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.1
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.03
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.02
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.99
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.97
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.96
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.93
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.9
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.7
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.25
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.03
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.69
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.95
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.91
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.71
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.33
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.48

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=1.1e-14  Score=101.06  Aligned_cols=70  Identities=30%  Similarity=0.449  Sum_probs=32.3

Q ss_pred             EEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           38 SFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        38 ~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      .|++++|.+. .+|..+..+++|+.|++++|+..+.+|..++.+++|+++++++|+..+.+|..+++++++
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence            4444444333 333334444444444444444444444444444555555555544445555444444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.57  E-value=1.7e-14  Score=100.11  Aligned_cols=99  Identities=23%  Similarity=0.445  Sum_probs=91.4

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +++|++|++++ +.++.+|..+..+.+|   +     .|++++|.+..+|+.+..+++|+.|++++|+..+.+|..++.+
T Consensus       182 l~~L~~L~L~~-n~l~~lp~~l~~l~~L---~-----~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          182 LVNLQSLRLEW-TGIRSLPASIANLQNL---K-----SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             STTCCEEEEEE-ECCCCCCGGGGGCTTC---C-----EEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             CCCCCEEECcC-CCcCcchHhhcCCCCC---C-----EEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence            46899999999 5788999889999999   9     9999999999999999999999999999999899999999999


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++|++|++++|+..+.+|..++++++|+
T Consensus       253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          253 APLKRLILKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             CCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred             CCCCEEECCCCCchhhcchhhhcCCCCC
Confidence            9999999999999999999888888774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=3.6e-13  Score=88.76  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=69.0

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccccc
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTIN   78 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~   78 (108)
                      +++|++|++++ +.++.++ ..+..+.+|   +     .|++++|.+..+++. +..+++|+.|++++|......|..|.
T Consensus        56 l~~L~~L~L~~-N~i~~i~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  126 (220)
T 2v70_A           56 LPQLRKINFSN-NKITDIEEGAFEGASGV---N-----EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI  126 (220)
T ss_dssp             CTTCCEEECCS-SCCCEECTTTTTTCTTC---C-----EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred             CCCCCEEECCC-CcCCEECHHHhCCCCCC---C-----EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence            35677777777 4566665 366777777   7     888888888766654 77788888888888543333456777


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .+++|++|++++|......|..|..+++|+
T Consensus       127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A          127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             TCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             CCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            888888888888665555577777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.47  E-value=5.9e-13  Score=88.12  Aligned_cols=95  Identities=25%  Similarity=0.322  Sum_probs=58.4

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++|++|++++ +.++.+| ..+..+.+|   +     .|++++|+++.+++. +..+++|+.|++++ +.+..+|..+..
T Consensus        64 ~~L~~L~L~~-N~l~~i~~~~~~~l~~L---~-----~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~  133 (229)
T 3e6j_A           64 INLKELYLGS-NQLGALPVGVFDSLTQL---T-----VLDLGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIER  133 (229)
T ss_dssp             TTCCEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGG
T ss_pred             cCCcEEECCC-CCCCCcChhhcccCCCc---C-----EEECCCCcCCccChhHhCcchhhCeEeccC-CcccccCccccc
Confidence            4566666666 3455555 334556666   6     777777776666544 56677777777776 345667776777


Q ss_pred             CCCCCEEeecCCCCCcccc-cCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVP-ETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p-~~~~~l~~L  107 (108)
                      +++|++|++++|.. ..+| ..|..+++|
T Consensus       134 l~~L~~L~L~~N~l-~~~~~~~~~~l~~L  161 (229)
T 3e6j_A          134 LTHLTHLALDQNQL-KSIPHGAFDRLSSL  161 (229)
T ss_dssp             CTTCSEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCcC-CccCHHHHhCCCCC
Confidence            77777777777543 3343 445555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.46  E-value=7.2e-13  Score=85.82  Aligned_cols=96  Identities=26%  Similarity=0.388  Sum_probs=76.4

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCcccc-ccccC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~   79 (108)
                      +++++|++++ +.++.+|..+..+.+|   +     .|++++|.++.+++ .|.++++|+.|++++| .+..++ .+|.+
T Consensus        31 ~~l~~L~L~~-n~i~~ip~~~~~l~~L---~-----~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~  100 (193)
T 2wfh_A           31 RDVTELYLDG-NQFTLVPKELSNYKHL---T-----LIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDG  100 (193)
T ss_dssp             TTCCEEECCS-SCCCSCCGGGGGCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTT
T ss_pred             CCCCEEECCC-CcCchhHHHhhcccCC---C-----EEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCC
Confidence            3688899999 5788888888888889   8     99999999997765 4899999999999995 466655 47889


Q ss_pred             CCCCCEEeecCCCCCccccc-CcCCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPE-TLGKVESLE  108 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~-~~~~l~~L~  108 (108)
                      +++|++|++++|.. ..+|. .|..+++|+
T Consensus       101 l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A          101 LKSLRLLSLHGNDI-SVVPEGAFNDLSALS  129 (193)
T ss_dssp             CTTCCEEECCSSCC-CBCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCCC-CeeChhhhhcCcccc
Confidence            99999999999654 45554 577776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=7e-13  Score=87.34  Aligned_cols=96  Identities=26%  Similarity=0.311  Sum_probs=53.9

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccc-ccccc
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSL-PSTIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l-p~~~~   78 (108)
                      ++|++|++++ +.++.+ |..+..+.+|   +     +|++++|++..+|+. +.++++|+.|++++|. +..+ |..|.
T Consensus        56 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~  125 (220)
T 2v9t_B           56 KKLRRIDLSN-NQISELAPDAFQGLRSL---N-----SLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQ  125 (220)
T ss_dssp             TTCCEEECCS-SCCCEECTTTTTTCSSC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred             CCCCEEECCC-CcCCCcCHHHhhCCcCC---C-----EEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcC
Confidence            3556666666 344444 4555555666   5     666666666666554 4566666666666643 3333 44566


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      .+++|++|++++|......+..|..+++|
T Consensus       126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            66666777776654433333445555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.44  E-value=9.5e-13  Score=85.01  Aligned_cols=96  Identities=23%  Similarity=0.331  Sum_probs=74.3

Q ss_pred             CCcEEeccCCcCCCcCCc--ccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccc-ccccc
Q 046123            3 SLKTLVLSGCLKLKKFPD--IVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSL-PSTIN   78 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~--~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~   78 (108)
                      ++++|++++ +.++.++.  .+..+.+|   +     +|++++|+++.+ |..+..+++|+.|++++|. +..+ |..|+
T Consensus        30 ~l~~L~l~~-n~i~~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~   99 (192)
T 1w8a_A           30 HTTELLLND-NELGRISSDGLFGRLPHL---V-----KLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFL   99 (192)
T ss_dssp             TCSEEECCS-CCCCSBCCSCSGGGCTTC---C-----EEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSST
T ss_pred             CCCEEECCC-CcCCccCCccccccCCCC---C-----EEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhc
Confidence            578888888 46777764  36778888   8     999999998866 5568889999999999854 5554 44688


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++++|++|++++|......|..|+.+++|+
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A          100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             CCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            889999999999776666677787777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=3.1e-13  Score=102.48  Aligned_cols=96  Identities=25%  Similarity=0.362  Sum_probs=77.4

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ..|+.|++++ +.+..+|..+..+.+|   +     .|++++|.++.+|..+..+++|+.|++++| .+..+|+.|+.++
T Consensus       224 ~~L~~L~Ls~-n~l~~l~~~~~~l~~L---~-----~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~  293 (727)
T 4b8c_D          224 QLWHALDLSN-LQIFNISANIFKYDFL---T-----RLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF  293 (727)
T ss_dssp             CCCCEEECTT-SCCSCCCGGGGGCCSC---S-----CCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred             CCCcEEECCC-CCCCCCChhhcCCCCC---C-----EEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence            5678888888 4677888777778888   8     888888888888888888888888888884 4668888888888


Q ss_pred             CCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           82 SLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        82 ~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      +|++|++++| .+..+|..|+++++|+
T Consensus       294 ~L~~L~L~~N-~l~~lp~~~~~l~~L~  319 (727)
T 4b8c_D          294 QLKYFYFFDN-MVTTLPWEFGNLCNLQ  319 (727)
T ss_dssp             TCSEEECCSS-CCCCCCSSTTSCTTCC
T ss_pred             CCCEEECCCC-CCCccChhhhcCCCcc
Confidence            8888888885 4567888788877764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.41  E-value=1.3e-12  Score=95.77  Aligned_cols=96  Identities=22%  Similarity=0.153  Sum_probs=62.2

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~   79 (108)
                      ++++|++++ +.++.+| ..+..+.+|   +     +|++++|+++.+++. |.++++|++|++++| .+..+|+ +|.+
T Consensus        53 ~~~~LdLs~-N~i~~l~~~~f~~l~~L---~-----~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~  122 (635)
T 4g8a_A           53 STKNLDLSF-NPLRHLGSYSFFSFPEL---Q-----VLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG  122 (635)
T ss_dssp             TCCEEECTT-SCCCEECTTTTTTCTTC---C-----EEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTT
T ss_pred             CCCEEEeeC-CCCCCCCHHHHhCCCCC---C-----EEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcC
Confidence            567777777 4666665 456777777   7     777777777766543 777777777777774 4555554 4667


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      +++|++|++++|+.....+..|+++++|+
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~  151 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLK  151 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence            77777777777544333333466666553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.41  E-value=5.8e-13  Score=91.71  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=58.3

Q ss_pred             CCCcEEeccC-CcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSG-CLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~-~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++|++|++++ |+....+|..+..+.+|   +     +|++++|.+. .+|..+..+++|+.|++++|.....+|..++.
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L---~-----~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  147 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQL---H-----YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTC---S-----EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCC---C-----EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence            4566666663 33333456666666666   6     6666666666 55556666666667766664433356666666


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVE  105 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~  105 (108)
                      +++|+++++++|.....+|..++.+.
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhh
Confidence            66677777766555446666555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.39  E-value=4.2e-12  Score=84.73  Aligned_cols=95  Identities=25%  Similarity=0.374  Sum_probs=47.5

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~   79 (108)
                      +|++|++++ +.++.+| ..+..+.+|   +     +|++++|++..+++. +..+++|+.|++++| .+..+|+ .++.
T Consensus        84 ~L~~L~L~~-n~l~~~~~~~~~~l~~L---~-----~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~  153 (251)
T 3m19_A           84 ELGTLGLAN-NQLASLPLGVFDHLTQL---D-----KLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDK  153 (251)
T ss_dssp             TCCEEECTT-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             cCCEEECCC-CcccccChhHhcccCCC---C-----EEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCc
Confidence            444444444 2333333 233444444   4     555555555555443 455566666666653 3444443 4556


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +++|++|++++|......+..+..+++|
T Consensus       154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          154 LTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            6666666666644333333345555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.38  E-value=5.7e-12  Score=81.79  Aligned_cols=96  Identities=26%  Similarity=0.363  Sum_probs=49.0

Q ss_pred             CCCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      ++|++|++++ +.++.+|. .+..+.+|   +     +|++++|++..+++. +..+++|+.|++++| .+..+|+ .+.
T Consensus        52 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  121 (208)
T 2o6s_A           52 TSLTQLYLGG-NKLQSLPNGVFNKLTSL---T-----YLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFD  121 (208)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             ccCcEEECCC-CccCccChhhcCCCCCc---C-----EEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhc
Confidence            3455555555 34444442 23445555   5     666666666555443 455666666666653 3444443 345


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      .+++|+++++++|......+..++.+++|
T Consensus       122 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A          122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            56666666666644332222334544444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.38  E-value=2.3e-12  Score=95.44  Aligned_cols=92  Identities=18%  Similarity=0.222  Sum_probs=51.4

Q ss_pred             CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCC
Q 046123            4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSL   83 (108)
Q Consensus         4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L   83 (108)
                      |++|++++ +.++.+|. ++.+.+|   +     .|++++|.+..+|..++.+++|+.|++++| .+..+| .++.+++|
T Consensus       443 L~~L~Ls~-n~l~~lp~-~~~l~~L---~-----~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L  510 (567)
T 1dce_A          443 VRVLHLAH-KDLTVLCH-LEQLLLV---T-----HLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRL  510 (567)
T ss_dssp             CSEEECTT-SCCSSCCC-GGGGTTC---C-----EEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSC
T ss_pred             ceEEEecC-CCCCCCcC-ccccccC---c-----EeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCC
Confidence            55566666 34555554 5555556   5     666666666666655666666666666653 344455 45566666


Q ss_pred             CEEeecCCCCCccc-ccCcCCCCCC
Q 046123           84 RTLYLSGCSKLKNV-PETLGKVESL  107 (108)
Q Consensus        84 ~~l~l~~~~~~~~~-p~~~~~l~~L  107 (108)
                      ++|++++|...... |..++.+++|
T Consensus       511 ~~L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          511 QELLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cEEECCCCCCCCCCCcHHHhcCCCC
Confidence            66666664433332 5555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.37  E-value=6.9e-12  Score=85.68  Aligned_cols=95  Identities=26%  Similarity=0.299  Sum_probs=54.3

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccc-cccC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPS-TING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~   79 (108)
                      ++|++|++++ +.++.+|..+..+.+|   +     .|++++|++..+|+ .|..+++|+.|++++| .+..+|+ .+..
T Consensus        77 ~~L~~L~Ls~-N~l~~l~~~~~~l~~L---~-----~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  146 (290)
T 1p9a_G           77 PVLGTLDLSH-NQLQSLPLLGQTLPAL---T-----VLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTP  146 (290)
T ss_dssp             TTCCEEECCS-SCCSSCCCCTTTCTTC---C-----EEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred             CcCCEEECCC-CcCCcCchhhccCCCC---C-----EEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhccc
Confidence            4566666666 4566666655666666   6     66666666665553 3666666666666663 3444443 3455


Q ss_pred             CCCCCEEeecCCCCCccccc-CcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPE-TLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~-~~~~l~~L  107 (108)
                      +++|++|++++|. +..+|. .|..+++|
T Consensus       147 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G          147 TPKLEKLSLANNN-LTELPAGLLNGLENL  174 (290)
T ss_dssp             CTTCCEEECTTSC-CSCCCTTTTTTCTTC
T ss_pred             ccCCCEEECCCCc-CCccCHHHhcCcCCC
Confidence            6666666666643 333432 34444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.37  E-value=6.1e-12  Score=83.21  Aligned_cols=96  Identities=21%  Similarity=0.392  Sum_probs=79.0

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      ++|++|++++ +.+..+ |..+..+.+|   +     .|++++|++..+|.. +..+++|+.|++++| .+..+|+ .+.
T Consensus        40 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L---~-----~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~  109 (229)
T 3e6j_A           40 TNAQILYLHD-NQITKLEPGVFDSLINL---K-----ELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFD  109 (229)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCCEEEcCC-CccCccCHHHhhCccCC---c-----EEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhC
Confidence            4689999999 466666 5778888999   9     999999999988765 789999999999995 5667665 468


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .+++|++|++++|. +..+|..+..+++|+
T Consensus       110 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~  138 (229)
T 3e6j_A          110 RLVHLKELFMCCNK-LTELPRGIERLTHLT  138 (229)
T ss_dssp             TCTTCCEEECCSSC-CCSCCTTGGGCTTCS
T ss_pred             cchhhCeEeccCCc-ccccCcccccCCCCC
Confidence            89999999999954 568888887777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.36  E-value=6.3e-12  Score=82.76  Aligned_cols=97  Identities=20%  Similarity=0.250  Sum_probs=79.9

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCcccccc-cc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPST-IN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~   78 (108)
                      ++++.|++++ +.++.++ ..+..+.+|   +     .|++++|.+..+ |..|.++++|+.|++++ +.+..+|+. |.
T Consensus        32 ~~l~~L~l~~-n~i~~i~~~~~~~l~~L---~-----~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~  101 (220)
T 2v9t_B           32 ETITEIRLEQ-NTIKVIPPGAFSPYKKL---R-----RIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFE  101 (220)
T ss_dssp             TTCCEEECCS-SCCCEECTTSSTTCTTC---C-----EEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTT
T ss_pred             cCCCEEECCC-CcCCCcCHhHhhCCCCC---C-----EEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHcc
Confidence            3688999999 5677776 477888899   9     999999999976 66799999999999999 567777765 68


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++++|++|++++|......|..|+.+++|+
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            899999999999776666677788877764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.36  E-value=3.5e-12  Score=93.46  Aligned_cols=98  Identities=26%  Similarity=0.328  Sum_probs=78.8

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cc
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TI   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~   77 (108)
                      +++|++|++++ +.++.++ ..+..+.+|   +     +|++++|+++.+|+. |.++++|+.|++++| .+..+|+ .|
T Consensus        75 l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L---~-----~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~  144 (635)
T 4g8a_A           75 FPELQVLDLSR-CEIQTIEDGAYQSLSHL---S-----TLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPI  144 (635)
T ss_dssp             CTTCCEEECTT-CCCCEECTTTTTTCTTC---C-----EEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCC
T ss_pred             CCCCCEEECCC-CcCCCcChhHhcCCCCC---C-----EEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhh
Confidence            46899999999 5788876 567889999   9     999999999988765 899999999999995 5666665 68


Q ss_pred             cCCCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLK-NVPETLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~  108 (108)
                      +++++|++|++++|.... ..|..++.+++|+
T Consensus       145 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A          145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             hcCcccCeeccccCccccCCCchhhccchhhh
Confidence            999999999999976543 4566677766654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.36  E-value=9.1e-12  Score=83.11  Aligned_cols=97  Identities=23%  Similarity=0.271  Sum_probs=61.6

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-cc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-IN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~   78 (108)
                      ++|++|++++ +.++.++ ..+..+.+|   +     +|++++|.+..+++. +..+++|+.|++++| .+..+|+. ++
T Consensus        59 ~~L~~L~L~~-n~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  128 (251)
T 3m19_A           59 TKLTWLNLDY-NQLQTLSAGVFDDLTEL---G-----TLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFD  128 (251)
T ss_dssp             TTCCEEECTT-SCCCCCCTTTTTTCTTC---C-----EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             ccCCEEECCC-CcCCccCHhHhccCCcC---C-----EEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhc
Confidence            4567777777 3455543 445666667   6     777777777766544 667777777777774 45555543 56


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .+++|++|++++|......+..|+.+++|+
T Consensus       129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A          129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            777888888887544333333566666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.35  E-value=1.3e-11  Score=78.41  Aligned_cols=96  Identities=29%  Similarity=0.464  Sum_probs=72.2

Q ss_pred             CCCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      +++++|++++ +.++.++. .+..+.+|   +     +|++++|.+..+++. +..+++|+.|++++| .+..+|+ .++
T Consensus        28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~   97 (177)
T 2o6r_A           28 SSATRLELES-NKLQSLPHGVFDKLTQL---T-----KLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFD   97 (177)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTC---S-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCcEEEeCC-CcccEeCHHHhcCcccc---c-----EEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhh
Confidence            4688899998 46777764 45778888   8     999999999877765 688899999999984 5666665 467


Q ss_pred             CCCCCCEEeecCCCCCccccc-CcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPE-TLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~-~~~~l~~L~  108 (108)
                      .+++|+++++++|.. ..+|. .+..+++|+
T Consensus        98 ~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~  127 (177)
T 2o6r_A           98 KLTQLKELALDTNQL-KSVPDGIFDRLTSLQ  127 (177)
T ss_dssp             TCTTCCEEECCSSCC-SCCCTTTTTTCTTCC
T ss_pred             CCcccCEEECcCCcc-eEeCHHHhcCCcccC
Confidence            888999999998654 45554 456666653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=1.2e-12  Score=99.38  Aligned_cols=91  Identities=22%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +++|++|++++ +.++.+|..+..+.+|   +     +|++++|.++.+|..++.+++|+.|++++| .++.+|..|+.+
T Consensus       246 l~~L~~L~Ls~-N~l~~lp~~~~~l~~L---~-----~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l  315 (727)
T 4b8c_D          246 YDFLTRLYLNG-NSLTELPAEIKNLSNL---R-----VLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNL  315 (727)
T ss_dssp             CCSCSCCBCTT-SCCSCCCGGGGGGTTC---C-----EEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSC
T ss_pred             CCCCCEEEeeC-CcCcccChhhhCCCCC---C-----EEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChhhhcC
Confidence            46899999999 5788999989999999   9     999999999999999999999999999995 678999999999


Q ss_pred             CCCCEEeecCCCCCcccccCc
Q 046123           81 RSLRTLYLSGCSKLKNVPETL  101 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~  101 (108)
                      ++|++|++++|...+.+|..+
T Consensus       316 ~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          316 CNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TTCCCEECTTSCCCSHHHHHH
T ss_pred             CCccEEeCCCCccCCCChHHH
Confidence            999999999988776666544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.34  E-value=5.6e-12  Score=95.71  Aligned_cols=97  Identities=23%  Similarity=0.271  Sum_probs=51.6

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      +|++|++++|...+.+|..+..+.+|   +     .|++++|++. .+|..+..+++|+.|++++|...+.+|.+++.++
T Consensus       443 ~L~~L~L~~n~l~~~~p~~~~~l~~L---~-----~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          443 KLRDLKLWLNMLEGEIPQELMYVKTL---E-----TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTC---C-----EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCc---e-----EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            44445554433222344444444555   5     5555555555 4455555566666666665444445555555666


Q ss_pred             CCCEEeecCCCCCcccccCcCCCCCC
Q 046123           82 SLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        82 ~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +|+++++++|...+.+|..++++++|
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCC
Confidence            66666666655555555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.34  E-value=2.8e-12  Score=97.35  Aligned_cols=91  Identities=22%  Similarity=0.238  Sum_probs=81.5

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++|+.|++++|...+.+|..++.+..|   +     .|++++|+++ .+|+.++.+++|+.|++++|+..+.+|..++.+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L---~-----~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYL---F-----ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTC---C-----EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             ccccEEECcCCcccccCCHHHhccccC---C-----EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence            568899999976556789999999999   9     9999999999 789899999999999999987777899999999


Q ss_pred             CCCCEEeecCCCCCcccccC
Q 046123           81 RSLRTLYLSGCSKLKNVPET  100 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~  100 (108)
                      ++|+++++++|+..+.+|..
T Consensus       704 ~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          704 TMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCCSEEECCSSEEEEECCSS
T ss_pred             CCCCEEECcCCcccccCCCc
Confidence            99999999999888888853

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.34  E-value=1.4e-11  Score=83.07  Aligned_cols=69  Identities=23%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +|++++|.+..+++. +..+++|+.|++++|. +..+|+ .++.+++|+++++++|......|..++.+++|
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  207 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence            555555544444333 3445555555555532 333332 23445555555555544333333334444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.34  E-value=6.2e-12  Score=79.15  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=35.9

Q ss_pred             CCcEEeccCCcCCC--cCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++++|++++| .++  .+|..+..+.+|   +     +|++++|.+..+ ..+..+++|+.|++++|.....+|..++.+
T Consensus        25 ~L~~L~l~~n-~l~~~~i~~~~~~l~~L---~-----~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           25 AVRELVLDNC-KSNDGKIEGLTAEFVNL---E-----FLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             SCSEEECCSC-BCBTTBCSSCCGGGGGC---C-----EEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             cCCEEECCCC-CCChhhHHHHHHhCCCC---C-----EEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence            4556666653 343  455444555555   5     555555544443 334444444444444432222233333334


Q ss_pred             CCCCEEeecC
Q 046123           81 RSLRTLYLSG   90 (108)
Q Consensus        81 ~~L~~l~l~~   90 (108)
                      ++|+++++++
T Consensus        95 ~~L~~L~Ls~  104 (168)
T 2ell_A           95 PNLTHLNLSG  104 (168)
T ss_dssp             TTCCEEECBS
T ss_pred             CCCCEEeccC
Confidence            4444444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.34  E-value=3.6e-12  Score=80.25  Aligned_cols=95  Identities=24%  Similarity=0.286  Sum_probs=73.9

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccc-cCcccccCCCCcEEeccCCcCCcccc--cccc
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSLP--STIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~lp--~~~~   78 (108)
                      ++|++|++++| .++.+ ..+..+.+|   +     +|++++|++.. +|..+..+++|+.|++++| .+..+|  ..++
T Consensus        49 ~~L~~L~l~~n-~l~~~-~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~  117 (168)
T 2ell_A           49 VNLEFLSLINV-GLISV-SNLPKLPKL---K-----KLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLK  117 (168)
T ss_dssp             GGCCEEEEESS-CCCCC-SSCCCCSSC---C-----EEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGS
T ss_pred             CCCCEEeCcCC-CCCCh-hhhccCCCC---C-----EEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHh
Confidence            57899999995 57777 667788888   8     99999999986 6666777999999999995 577765  6788


Q ss_pred             CCCCCCEEeecCCCCCccccc----CcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPE----TLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~----~~~~l~~L~  108 (108)
                      .+++|+++++++|.. ..+|.    .+..+++|+
T Consensus       118 ~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A          118 KLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCC
T ss_pred             cCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCc
Confidence            899999999999654 44554    566666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=1.3e-11  Score=78.32  Aligned_cols=75  Identities=24%  Similarity=0.306  Sum_probs=36.7

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-cccCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TINGLRS   82 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~   82 (108)
                      +++++++ +.++.+|..+.  ..+   +     .|++++|+++.++ ..+..+++|+.|++++| .+..+|+ .|..+++
T Consensus        12 ~~l~~s~-n~l~~ip~~~~--~~l---~-----~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           12 TTVDCSG-KSLASVPTGIP--TTT---Q-----VLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTC---S-----EEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CEEEeCC-CCcCccCccCC--CCC---c-----EEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCC
Confidence            4455555 34555554332  344   4     5555555555442 23555555555555552 3444443 2345555


Q ss_pred             CCEEeecCC
Q 046123           83 LRTLYLSGC   91 (108)
Q Consensus        83 L~~l~l~~~   91 (108)
                      |++|++++|
T Consensus        80 L~~L~L~~N   88 (170)
T 3g39_A           80 LTQLSLNDN   88 (170)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            555555553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.33  E-value=1.1e-11  Score=81.50  Aligned_cols=96  Identities=20%  Similarity=0.194  Sum_probs=76.9

Q ss_pred             CCcEEeccCCcCCCcCC--cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCcccc-cccc
Q 046123            3 SLKTLVLSGCLKLKKFP--DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STIN   78 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p--~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~   78 (108)
                      .+++|++++ +.++.++  ..+..+.+|   +     .|++++|.+..+++ .|..+++|+.|++++|. +..++ ..|+
T Consensus        33 ~~~~L~L~~-N~l~~~~~~~~~~~l~~L---~-----~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~  102 (220)
T 2v70_A           33 YTAELRLNN-NEFTVLEATGIFKKLPQL---R-----KINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFK  102 (220)
T ss_dssp             TCSEEECCS-SCCCEECCCCCGGGCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGT
T ss_pred             CCCEEEcCC-CcCCccCchhhhccCCCC---C-----EEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhc
Confidence            467889988 5677763  346778888   8     99999999997766 59999999999999954 55555 4688


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .+++|++|++++|......|..|..+++|+
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  132 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFIGLSSVR  132 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred             CCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence            999999999999776666678888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.33  E-value=1.9e-11  Score=79.36  Aligned_cols=97  Identities=24%  Similarity=0.342  Sum_probs=76.9

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      +++++|++++ +.++.++ ..+..+.+|   +     +|++++|++..+++. +..+++|+.|++++| .+..+|+ .++
T Consensus        28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~   97 (208)
T 2o6s_A           28 AQTTYLDLET-NSLKSLPNGVFDELTSL---T-----QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFD   97 (208)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTC---S-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCcEEEcCC-CccCcCChhhhcccccC---c-----EEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhc
Confidence            4689999999 5677776 456788999   9     999999999988765 789999999999995 5666665 478


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .+++|+++++++|......+..|+.+++|+
T Consensus        98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  127 (208)
T 2o6s_A           98 KLTQLKELALNTNQLQSLPDGVFDKLTQLK  127 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence            999999999999765444444577777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.33  E-value=3.4e-12  Score=78.91  Aligned_cols=79  Identities=20%  Similarity=0.221  Sum_probs=38.7

Q ss_pred             CCcEEeccCCcCCC--cCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +++.|++++| .++  .+|..+..+.+|   +     .|++++|.+..+ ..+..+++|+.|++++|.....+|..++.+
T Consensus        18 ~l~~L~l~~n-~l~~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           18 DVKELVLDNS-RSNEGKLEGLTDEFEEL---E-----FLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             GCSEEECTTC-BCBTTBCCSCCTTCTTC---C-----EEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             cCeEEEccCC-cCChhHHHHHHhhcCCC---c-----EEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence            4555666663 333  455555555555   5     555555555544 334555555555555533222244444444


Q ss_pred             CCCCEEeecCC
Q 046123           81 RSLRTLYLSGC   91 (108)
Q Consensus        81 ~~L~~l~l~~~   91 (108)
                      ++|+++++++|
T Consensus        88 ~~L~~L~ls~N   98 (149)
T 2je0_A           88 PNLTHLNLSGN   98 (149)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEECCCC
Confidence            55555555553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.33  E-value=1.4e-12  Score=80.67  Aligned_cols=96  Identities=21%  Similarity=0.285  Sum_probs=76.6

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccc-cCcccccCCCCcEEeccCCcCCcccc--ccc
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSLP--STI   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~lp--~~~   77 (108)
                      +++|++|++++| .++.+ ..+..+.+|   +     ++++++|.+.. +|..+..+++|+.|++++| .+..+|  ..+
T Consensus        41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L---~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~  109 (149)
T 2je0_A           41 FEELEFLSTINV-GLTSI-ANLPKLNKL---K-----KLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPL  109 (149)
T ss_dssp             CTTCCEEECTTS-CCCCC-TTCCCCTTC---C-----EEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGG
T ss_pred             cCCCcEEECcCC-CCCCc-hhhhcCCCC---C-----EEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHH
Confidence            467999999995 67777 667888899   9     99999999996 6666778999999999995 466654  789


Q ss_pred             cCCCCCCEEeecCCCCCccccc----CcCCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVPE----TLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p~----~~~~l~~L~  108 (108)
                      +.+++|+++++++|.. ..+|.    .++.+++|+
T Consensus       110 ~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A          110 KKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             GGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCC
T ss_pred             hhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcc
Confidence            9999999999999754 44443    466666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.33  E-value=8e-12  Score=80.71  Aligned_cols=55  Identities=18%  Similarity=0.234  Sum_probs=24.9

Q ss_pred             EEEecCccccc-cCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCC
Q 046123           38 SFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        38 ~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~   92 (108)
                      +|++++|.+.. .+..+..+++|+.|++++|......|..++.+++|+++++++|.
T Consensus        92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            45555544442 33444444555555555433222334444444445555554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.33  E-value=2.3e-12  Score=88.73  Aligned_cols=99  Identities=18%  Similarity=0.245  Sum_probs=84.4

Q ss_pred             CCCcEEeccCCcCCC--cCCcccCCccccccccCcceeEEEecC-cccc-ccCcccccCCCCcEEeccCCcCCccccccc
Q 046123            2 KSLKTLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEG-TAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTI   77 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~-~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~   77 (108)
                      .+++.|++++|...+  .+|+.+..+.+|   +     +|++++ |.+. .+|..+..+++|++|++++|.....+|+.+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L---~-----~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYL---N-----FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTC---S-----EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCC---C-----eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence            357899999954444  689999999999   9     999995 8887 778889999999999999966555899999


Q ss_pred             cCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      +.+++|+++++++|.....+|..++.+++|+
T Consensus       122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  152 (313)
T 1ogq_A          122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence            9999999999999877778898888888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.33  E-value=8.7e-12  Score=91.74  Aligned_cols=97  Identities=24%  Similarity=0.298  Sum_probs=52.8

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCcccc-cccc
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLP-STIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~   78 (108)
                      ++|++|++++| .++.+ |..+..+.+|   +     +|++++|.+..+ |..|.++++|++|++++|. +..++ ..++
T Consensus        56 ~~L~~L~Ls~n-~l~~i~~~~~~~l~~L---~-----~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  125 (606)
T 3vq2_A           56 SELQWLDLSRC-EIETIEDKAWHGLHHL---S-----NLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIG  125 (606)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTC---C-----EEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCT
T ss_pred             ccCcEEeCCCC-cccccCHHHhhchhhc---C-----EeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccC
Confidence            45556666653 34444 3445555555   5     666666666544 4446666666666666633 33333 4556


Q ss_pred             CCCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLK-NVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~  108 (108)
                      ++++|+++++++|.... .+|..++++++|+
T Consensus       126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  156 (606)
T 3vq2_A          126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLV  156 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred             CCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence            66666666666654433 3566566555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.32  E-value=2.2e-11  Score=82.21  Aligned_cols=96  Identities=26%  Similarity=0.397  Sum_probs=57.8

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      ++|++|++++| .++.++ ..+..+.+|   +     +|++++|++..+++. +..+++|+.|++++| .+..+|+ .++
T Consensus        85 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  154 (272)
T 3rfs_A           85 TNLTYLILTGN-QLQSLPNGVFDKLTNL---K-----ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFD  154 (272)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTC---C-----EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCCEEECCCC-ccCccChhHhcCCcCC---C-----EEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhc
Confidence            45666666663 455554 334556666   6     777777777655544 566777777777774 3445444 356


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      .+++|+++++++|......+..++.+++|
T Consensus       155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          155 KLTNLTELDLSYNQLQSLPEGVFDKLTQL  183 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCccCCEEECCCCCcCccCHHHhcCCccC
Confidence            67777777777765443333445555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.31  E-value=2.1e-11  Score=78.67  Aligned_cols=93  Identities=17%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc--cccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS--IELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      +++++++ +.++++|..+..  .+   +     .|++++|.+..+++.  +..+++|+.|++++|......|.+|+++++
T Consensus        11 ~~l~~s~-~~l~~ip~~~~~--~l---~-----~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDIPL--HT---T-----ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTT-SCCSSCCSCCCT--TC---S-----EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEcCC-CCcCcCccCCCC--CC---C-----EEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            6789999 678999976544  78   8     999999999988764  899999999999996544445788999999


Q ss_pred             CCEEeecCCCCCcccccCcCCCCCCC
Q 046123           83 LRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        83 L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      |++|++++|......|..|+++++|+
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCC
Confidence            99999999776666666688887764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.31  E-value=2.1e-11  Score=82.40  Aligned_cols=67  Identities=24%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeecCCCCCcccccCcCCCC
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLSGCSKLKNVPETLGKVE  105 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~  105 (108)
                      +|++++|++..+++. +..+++|+.|++++| .+..+|+ .+..+++|+++++++|......|..++.++
T Consensus       133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  201 (285)
T 1ozn_A          133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (285)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             EEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence            444444444433322 344444444444442 2333332 244444444444444333333344444333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.31  E-value=2.6e-11  Score=81.68  Aligned_cols=13  Identities=38%  Similarity=0.473  Sum_probs=5.3

Q ss_pred             cCCCCCCEEeecC
Q 046123           78 NGLRSLRTLYLSG   90 (108)
Q Consensus        78 ~~l~~L~~l~l~~   90 (108)
                      +.+++|+++++++
T Consensus       154 ~~l~~L~~L~L~~  166 (270)
T 2o6q_A          154 DKLTSLKELRLYN  166 (270)
T ss_dssp             TTCTTCCEEECCS
T ss_pred             cCCcccceeEecC
Confidence            3334444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=4.6e-12  Score=80.53  Aligned_cols=78  Identities=17%  Similarity=0.193  Sum_probs=42.2

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc--cccC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS--TING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~   79 (108)
                      +|++|++++ +.++.+ +.+..+.+|   +     +|++++|++..+|+. +..+++|+.|++++| .+..+|+  .++.
T Consensus        43 ~L~~L~Ls~-N~l~~~-~~l~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~  111 (176)
T 1a9n_A           43 QFDAIDFSD-NEIRKL-DGFPLLRRL---K-----TLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLAS  111 (176)
T ss_dssp             CCSEEECCS-SCCCEE-CCCCCCSSC---C-----EEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGG
T ss_pred             CCCEEECCC-CCCCcc-cccccCCCC---C-----EEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhc
Confidence            455555555 234444 334445555   5     666666666655544 255666666666653 3455554  5555


Q ss_pred             CCCCCEEeecCC
Q 046123           80 LRSLRTLYLSGC   91 (108)
Q Consensus        80 l~~L~~l~l~~~   91 (108)
                      +++|+++++++|
T Consensus       112 l~~L~~L~l~~N  123 (176)
T 1a9n_A          112 LKSLTYLCILRN  123 (176)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEEecCC
Confidence            666666666664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.30  E-value=6.6e-12  Score=81.12  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=79.7

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|+.|++++ +.++.+| .+..+.+|   +     .|++++|.+..++ .+..+++|+.|++++|......|..++.++
T Consensus        44 ~~L~~L~l~~-n~i~~l~-~l~~l~~L---~-----~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           44 NSLTYITLAN-INVTDLT-GIEYAHNI---K-----DLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HTCCEEEEES-SCCSCCT-TGGGCTTC---S-----EEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             CCccEEeccC-CCccChH-HHhcCCCC---C-----EEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            4789999999 5788888 57888899   9     9999999777554 688999999999999665555788899999


Q ss_pred             CCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           82 SLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        82 ~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      +|+++++++|......|..++.+++|+
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            999999999877766777777777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=2.7e-11  Score=77.27  Aligned_cols=78  Identities=23%  Similarity=0.448  Sum_probs=35.4

Q ss_pred             CcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-ccCC
Q 046123            4 LKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-INGL   80 (108)
Q Consensus         4 L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l   80 (108)
                      |++|++++ +.++.+ |..+..+.+|   +     +|++++|+++.+|+. +..+++|+.|++++ +.+..+|+. +..+
T Consensus        35 L~~L~Ls~-N~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l  104 (174)
T 2r9u_A           35 KQRLWLNN-NQITKLEPGVFDHLVNL---Q-----QLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNL  104 (174)
T ss_dssp             CSEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred             CcEEEeCC-CCccccCHHHhcCCcCC---C-----EEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccc
Confidence            44445544 233333 2334444444   4     555555555444433 34445555555544 233344432 4444


Q ss_pred             CCCCEEeecCC
Q 046123           81 RSLRTLYLSGC   91 (108)
Q Consensus        81 ~~L~~l~l~~~   91 (108)
                      ++|+++++++|
T Consensus       105 ~~L~~L~L~~N  115 (174)
T 2r9u_A          105 KSLTHIYLYNN  115 (174)
T ss_dssp             TTCSEEECCSS
T ss_pred             cCCCEEEeCCC
Confidence            45555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.30  E-value=1.3e-11  Score=90.78  Aligned_cols=98  Identities=17%  Similarity=0.150  Sum_probs=46.2

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccc--cCcccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRG--LPASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++|++|++++|......|..+..+.+|   +     .|++++|.+..  +|..+..+++|+.|++++|......|..+++
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  495 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSL---N-----TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT  495 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTC---C-----EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCC---C-----EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc
Confidence            345555555532222233444444555   4     55555555542  3444555555555555554333333444555


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +++|+++++++|......|..++++++|
T Consensus       496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          496 LHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             CTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             cccCCEEECCCCcCCCcCHHHccCCCcC
Confidence            5555555555544444444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.29  E-value=2.2e-11  Score=86.76  Aligned_cols=97  Identities=16%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++|++|++++| .++.+ |..+..+.+|   +     .|++++|.+..++ ..+..+++|+.|++++|......|.++.+
T Consensus       299 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          299 TDLEQLTLAQN-EINKIDDNAFWGLTHL---L-----KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTC---C-----EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCCCEEECCCC-cccccChhHhcCcccC---C-----EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence            34555555552 33333 3344555555   5     6666666655442 33555666666666664332233455666


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +++|+++++++|......+..++.+++|
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cccccEEECCCCccccCCHhHhccCCcc
Confidence            6666666666644333222334555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.29  E-value=3.3e-11  Score=77.94  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=75.7

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccc-ccccCCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLP-STINGLRSL   83 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L   83 (108)
                      ++++.++ +.++.+|..+.  ..+   +     .|++++|.+..+|..+..+++|+.|++++| .+..++ .+|.++.+|
T Consensus        13 ~~l~~~~-~~l~~ip~~~~--~~l---~-----~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPKGIP--RDV---T-----ELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTC---C-----EEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CEEEcCC-CCCCcCCCCCC--CCC---C-----EEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCC
Confidence            5688888 67889987553  578   8     999999999999988999999999999995 566655 578999999


Q ss_pred             CEEeecCCCCCcccccCcCCCCCCC
Q 046123           84 RTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        84 ~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++|++++|......|..|+++++|+
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCC
Confidence            9999999766555556788887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.29  E-value=2.1e-11  Score=83.24  Aligned_cols=96  Identities=27%  Similarity=0.335  Sum_probs=61.2

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccc-ccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLP-STINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l   80 (108)
                      ++|++|++++ +.++.++.. ..+.+|   +     .|++++|++..+|..+..+++|+.|++++| .+..+| ..|.++
T Consensus        55 ~~L~~L~L~~-n~l~~~~~~-~~l~~L---~-----~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l  123 (290)
T 1p9a_G           55 TRLTQLNLDR-AELTKLQVD-GTLPVL---G-----TLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGL  123 (290)
T ss_dssp             TTCCEEECTT-SCCCEEECC-SCCTTC---C-----EEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTC
T ss_pred             CCCCEEECCC-CccCcccCC-CCCCcC---C-----EEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCC
Confidence            3455555555 344444432 445556   6     777777777777777777888888888874 455555 457778


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++|++|++++|......+..|..+++|+
T Consensus       124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G          124 GELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccChhhcccccCCC
Confidence            8888888888654433334466665553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=1.2e-11  Score=91.63  Aligned_cols=87  Identities=17%  Similarity=0.110  Sum_probs=75.7

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccc--ccccc
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSL--PSTIN   78 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l--p~~~~   78 (108)
                      +++|+.|++++ +.++.+|..++.+.+|   +     .|++++|+++.+| .++.+++|+.|++++| .+..+  |+.++
T Consensus       462 l~~L~~L~Ls~-N~l~~lp~~~~~l~~L---~-----~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~  530 (567)
T 1dce_A          462 LLLVTHLDLSH-NRLRALPPALAALRCL---E-----VLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV  530 (567)
T ss_dssp             GTTCCEEECCS-SCCCCCCGGGGGCTTC---C-----EEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred             cccCcEeecCc-ccccccchhhhcCCCC---C-----EEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHh
Confidence            46899999999 5788999999999999   9     9999999999988 8999999999999995 56666  88999


Q ss_pred             CCCCCCEEeecCCCCCccccc
Q 046123           79 GLRSLRTLYLSGCSKLKNVPE   99 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~   99 (108)
                      .+++|++|++++|.. ...|.
T Consensus       531 ~l~~L~~L~L~~N~l-~~~~~  550 (567)
T 1dce_A          531 SCPRLVLLNLQGNSL-CQEEG  550 (567)
T ss_dssp             GCTTCCEEECTTSGG-GGSSS
T ss_pred             cCCCCCEEEecCCcC-CCCcc
Confidence            999999999999654 44443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.29  E-value=4.5e-11  Score=80.46  Aligned_cols=96  Identities=26%  Similarity=0.388  Sum_probs=67.9

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      ++|++|++++ +.++.++ ..+..+.+|   +     +|++++|.+..+|.. +..+++|+.|++++| .+..+|+ .+.
T Consensus       109 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  178 (270)
T 2o6q_A          109 VNLAELRLDR-NQLKSLPPRVFDSLTKL---T-----YLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFD  178 (270)
T ss_dssp             SSCCEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred             cCCCEEECCC-CccCeeCHHHhCcCcCC---C-----EEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhc
Confidence            4566666666 3455554 345566677   7     888888888877665 788899999999885 4666654 578


Q ss_pred             CCCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVP-ETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~  108 (108)
                      .+++|+++++++|.. ..+| ..|+.+++|+
T Consensus       179 ~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          179 KLTELKTLKLDNNQL-KRVPEGAFDSLEKLK  208 (270)
T ss_dssp             TCTTCCEEECCSSCC-SCCCTTTTTTCTTCC
T ss_pred             cCCCcCEEECCCCcC-CcCCHHHhccccCCC
Confidence            899999999999754 4455 4577666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.28  E-value=2.6e-11  Score=87.13  Aligned_cols=69  Identities=16%  Similarity=0.183  Sum_probs=28.1

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCC
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVES  106 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~  106 (108)
                      +|++++|.+..+|.. +.++++|+.|++++|......|..+..+++|++|++++|......|..|+++++
T Consensus        84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  153 (477)
T 2id5_A           84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS  153 (477)
T ss_dssp             EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred             EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence            444444444444332 344444444444443222222333444444444444443333333333443333

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.28  E-value=1.6e-11  Score=78.05  Aligned_cols=95  Identities=21%  Similarity=0.256  Sum_probs=75.4

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccc-cCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTI-NGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l   80 (108)
                      .+|++|++++ +.++.+|......++|   +     +|++++|.+..+ +.+..+++|+.|++++| .+..+|+.+ +.+
T Consensus        19 ~~L~~L~l~~-n~l~~i~~~~~~~~~L---~-----~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l   87 (176)
T 1a9n_A           19 VRDRELDLRG-YKIPVIENLGATLDQF---D-----AIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQAL   87 (176)
T ss_dssp             TSCEEEECTT-SCCCSCCCGGGGTTCC---S-----EEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred             CCceEEEeeC-CCCchhHHhhhcCCCC---C-----EEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcC
Confidence            5789999999 4777776533333488   8     999999999987 67999999999999995 577777655 889


Q ss_pred             CCCCEEeecCCCCCccccc--CcCCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPE--TLGKVESLE  108 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~--~~~~l~~L~  108 (108)
                      ++|+++++++|. +..+|.  .+..+++|+
T Consensus        88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           88 PDLTELILTNNS-LVELGDLDPLASLKSLT  116 (176)
T ss_dssp             TTCCEEECCSCC-CCCGGGGGGGGGCTTCC
T ss_pred             CCCCEEECCCCc-CCcchhhHhhhcCCCCC
Confidence            999999999965 566776  677666653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.27  E-value=5e-11  Score=80.59  Aligned_cols=13  Identities=38%  Similarity=0.700  Sum_probs=5.3

Q ss_pred             cCCCCCCEEeecC
Q 046123           78 NGLRSLRTLYLSG   90 (108)
Q Consensus        78 ~~l~~L~~l~l~~   90 (108)
                      +.+++|+++++++
T Consensus       150 ~~l~~L~~L~l~~  162 (285)
T 1ozn_A          150 RDLGNLTHLFLHG  162 (285)
T ss_dssp             TTCTTCCEEECCS
T ss_pred             ccCCCccEEECCC
Confidence            3344444444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.27  E-value=3.3e-11  Score=82.11  Aligned_cols=65  Identities=23%  Similarity=0.214  Sum_probs=28.5

Q ss_pred             EEEecCcccccc-CcccccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCCCCCcccccCcCC
Q 046123           38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGCSKLKNVPETLGK  103 (108)
Q Consensus        38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~~~~~p~~~~~  103 (108)
                      .|++++|.+..+ |..+..+++|+.|++++|. +..++ ..+..+++|+++++++|......|..+..
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            444444444433 2334444455555554432 22222 23444455555555554444444444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.26  E-value=4.3e-11  Score=84.09  Aligned_cols=98  Identities=21%  Similarity=0.257  Sum_probs=67.5

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-c
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-I   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~   77 (108)
                      +++|++|++++ +.++.++ ..+..+.+|   +     +|++++|.+..+++. +..+++|+.|++++| .+..+|+. +
T Consensus        68 l~~L~~L~L~~-n~i~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~  137 (390)
T 3o6n_A           68 FRQVELLNLND-LQIEEIDTYAFAYAHTI---Q-----KLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF  137 (390)
T ss_dssp             CCCCSEEECTT-SCCCEECTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             cccCcEEECCC-CcccccChhhccCCCCc---C-----EEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHh
Confidence            35677888877 3566654 466777777   7     888888887766544 777888888888874 56666665 4


Q ss_pred             cCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      +.+++|+++++++|......|..++.+++|+
T Consensus       138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             cCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            6777888888887655554455666666653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.26  E-value=2.7e-11  Score=88.24  Aligned_cols=97  Identities=27%  Similarity=0.378  Sum_probs=58.6

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      ++|++|++++| .++.++ ..+..+.+|   +     +|++++|.+..++ ..|.++++|+.|++++| .+..+++ .++
T Consensus        52 ~~L~~L~Ls~n-~i~~i~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~  121 (570)
T 2z63_A           52 PELQVLDLSRC-EIQTIEDGAYQSLSHL---S-----TLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIG  121 (570)
T ss_dssp             SSCCEEECTTC-CCCEECTTTTTTCTTC---C-----EEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCT
T ss_pred             CCceEEECCCC-cCCccCcccccCchhC---C-----EEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccc
Confidence            45666666663 455543 445666666   6     7777777666554 34666667777777663 3555443 466


Q ss_pred             CCCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLK-NVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~  108 (108)
                      ++++|+++++++|.... .+|..|+++++|+
T Consensus       122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  152 (570)
T 2z63_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  152 (570)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             ccccccEEecCCCccceecChhhhcccCCCC
Confidence            67777777777754433 3566666666553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.26  E-value=3.8e-11  Score=85.52  Aligned_cols=99  Identities=16%  Similarity=0.051  Sum_probs=80.0

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++|+++++++|......|..+..+.+|   +     .|++++|.+..+ |..+..+++|+.|++++|......|..++.+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDL---E-----QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTC---C-----EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred             cCceEEEecCccccccchhhcccCCCC---C-----EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence            468899999954344456778889999   9     999999999966 4569999999999999965444446788999


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++|++|++++|......|..|+.+++|+
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ccCCEEECCCCcccccChhhcccccccc
Confidence            9999999999877666688888887764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.26  E-value=4e-11  Score=80.72  Aligned_cols=95  Identities=25%  Similarity=0.365  Sum_probs=42.8

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-cccC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~   79 (108)
                      +|++|++++| .++.++ ..+..+.+|   +     +|++++|.+..++ ..+..+++|+.|++++|. +..+++ .++.
T Consensus        53 ~L~~L~l~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  122 (276)
T 2z62_A           53 ELQVLDLSRC-EIQTIEDGAYQSLSHL---S-----TLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGH  122 (276)
T ss_dssp             TCSEEECTTC-CCCEECTTTTTTCTTC---C-----EEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTT
T ss_pred             CCcEEECCCC-cCCccCHHHccCCcCC---C-----EEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhccc
Confidence            4445555442 333333 234444444   4     5555555554333 234455555555555432 222222 4555


Q ss_pred             CCCCCEEeecCCCCCc-ccccCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLK-NVPETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~-~~p~~~~~l~~L  107 (108)
                      +++|+++++++|.... .+|..++.+++|
T Consensus       123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L  151 (276)
T 2z62_A          123 LKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (276)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             CCCCCEEECcCCccceecCchhhccCCCC
Confidence            5555555555543322 234445444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.26  E-value=2.7e-11  Score=90.25  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccC
Q 046123            3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~   79 (108)
                      +|++|++++| .++.+ |..+..+.+|   +     +|++++|.+..+|+. |..+++|+.|++++|. +..+| .+|++
T Consensus        50 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  119 (680)
T 1ziw_A           50 QLTSLDVGFN-TISKLEPELCQKLPML---K-----VLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK  119 (680)
T ss_dssp             TCSEEECCSS-CCCCCCTTHHHHCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT
T ss_pred             cCcEEECCCC-ccCccCHHHHhcccCc---C-----EEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccc
Confidence            4455555552 23333 3344445555   5     666666666655543 5666666666666643 33333 45666


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +++|+++++++|......|..++++++|
T Consensus       120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  147 (680)
T 1ziw_A          120 QKNLITLDLSHNGLSSTKLGTQVQLENL  147 (680)
T ss_dssp             CTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred             cCCCCEEECCCCcccccCchhhcccccC
Confidence            6666666666655544445555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.25  E-value=4.3e-11  Score=88.58  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=70.8

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-c
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-I   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~   77 (108)
                      +++|++|++++| .++.++ ..+..+.+|   +     +|++++|.+..+++. ++.+++|+.|++++| .+..+|+. |
T Consensus        74 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~  143 (597)
T 3oja_B           74 FRQVELLNLNDL-QIEEIDTYAFAYAHTI---Q-----KLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF  143 (597)
T ss_dssp             CCCCSEEECTTS-CCCEECTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CCCCcEEECCCC-CCCCCChHHhcCCCCC---C-----EEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHh
Confidence            356788888884 566654 467777788   7     888888888866554 678888888888884 46666664 4


Q ss_pred             cCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      +.+++|++|++++|......|..|+.+++|+
T Consensus       144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B          144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             ccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence            7788888888888766555566677776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.25  E-value=5.1e-11  Score=80.19  Aligned_cols=97  Identities=20%  Similarity=0.092  Sum_probs=77.0

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++++|++++ +.++.++ ..+..+.+|   +     +|++++|.+..+++ .+..+++|+.|++++|......+..+.++
T Consensus        29 ~l~~L~ls~-n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (276)
T 2z62_A           29 STKNLDLSF-NPLRHLGSYSFFSFPEL---Q-----VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (276)
T ss_dssp             TCCEEECTT-CCCCEECTTTTTTCTTC---S-----EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CccEEECCC-CcccccCHhHhccccCC---c-----EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence            589999999 5677776 477888999   9     99999999997765 58999999999999955333444678999


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++|+++++++|......+..++.+++|+
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             ccccEEECCCCCccccCchhcccCCCCC
Confidence            9999999999765554444677777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=4.6e-11  Score=76.16  Aligned_cols=91  Identities=20%  Similarity=0.356  Sum_probs=74.1

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCcccccc-ccCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPST-INGLRS   82 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~   82 (108)
                      +.+++++ +.++.+|..+.  .++   +     .|++++|++..++ ..+..+++|+.|++++ +.+..+|+. |..+++
T Consensus        15 ~~l~~~~-n~l~~iP~~~~--~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIP--TDK---Q-----RLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCC--TTC---S-----EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred             cEEEeCC-CCCCccCCCcC--CCC---c-----EEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcch
Confidence            5788888 67899997654  678   8     9999999999774 5599999999999999 467788775 588999


Q ss_pred             CCEEeecCCCCCccccc-CcCCCCCCC
Q 046123           83 LRTLYLSGCSKLKNVPE-TLGKVESLE  108 (108)
Q Consensus        83 L~~l~l~~~~~~~~~p~-~~~~l~~L~  108 (108)
                      |++|++++|. +..+|. .|+.+++|+
T Consensus        83 L~~L~L~~N~-l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           83 LTQLDLNDNH-LKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCS
T ss_pred             hhEEECCCCc-cceeCHHHhccccCCC
Confidence            9999999965 455665 488887764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.25  E-value=1.1e-11  Score=86.24  Aligned_cols=95  Identities=19%  Similarity=0.236  Sum_probs=55.1

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc--cc
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS--TI   77 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~--~~   77 (108)
                      ++|++|++++| .++.+ |..+..+.+|   +     +|++++|.+..+++. +..+++|+.|++++| .+..+|.  .+
T Consensus        76 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~  145 (353)
T 2z80_A           76 VNLQALVLTSN-GINTIEEDSFSSLGSL---E-----HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLF  145 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTC---C-----EEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSC
T ss_pred             CCCCEEECCCC-ccCccCHhhcCCCCCC---C-----EEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhh
Confidence            45667777763 45554 3455666666   6     666666666666554 566666666666663 4445554  45


Q ss_pred             cCCCCCCEEeecCCCCCccc-ccCcCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNV-PETLGKVES  106 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~-p~~~~~l~~  106 (108)
                      +.+++|+++++++|+....+ +..++++++
T Consensus       146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  175 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTF  175 (353)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             ccCCCCcEEECCCCccccccCHHHccCCCC
Confidence            56666666666665434433 234444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.24  E-value=4.2e-11  Score=87.29  Aligned_cols=99  Identities=21%  Similarity=0.271  Sum_probs=61.7

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccc--ccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIR--GLPASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++|++|++++|......|..+..+.+|   +     .|++++|.+.  .+|..+..+++|+.|++++|......|..+..
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L---~-----~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  492 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSL---E-----VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  492 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTC---C-----EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcC---c-----EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence            456666666643222234555666666   6     7777777765  46666777777777777775444344667777


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      +++|+++++++|......|..++.+++|+
T Consensus       493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            77777777777655444445566666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.24  E-value=1.5e-11  Score=83.80  Aligned_cols=70  Identities=24%  Similarity=0.245  Sum_probs=37.0

Q ss_pred             EEEecCcccccc-CcccccCCCCcEEeccCCcCCc-cccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLK-SLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +|++++|.+... +..+..+++|+.|++++|.... .+|..++.+++|+++++++|......|..++.+++|
T Consensus       130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            555555555532 2335555566666665543222 255556666666666666654444445555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.24  E-value=1e-11  Score=92.65  Aligned_cols=98  Identities=13%  Similarity=0.180  Sum_probs=74.9

Q ss_pred             CCCCcEEeccCCcCCCc------------------CCcccC--CccccccccCcceeEEEecCcccc-ccCcccccCCCC
Q 046123            1 MKSLKTLVLSGCLKLKK------------------FPDIVG--KSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGS   59 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~------------------~p~~~~--~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L   59 (108)
                      +++|++|++++| .+..                  +|+.++  .+.+|   +     +|++++|.+. .+|+.++.+++|
T Consensus       205 l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L---~-----~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          205 LTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL---T-----DVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC---C-----EEEEECCTTCSSCCTTTTTCSSC
T ss_pred             ccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCC---C-----EEEecCCcCCccChHHHhcCCCC
Confidence            467888899885 4666                  888887  88888   8     8888888866 678778888888


Q ss_pred             cEEeccCCc-CCc-cccccccCC------CCCCEEeecCCCCCccccc--CcCCCCCCC
Q 046123           60 VLLNLKDCK-NLK-SLPSTINGL------RSLRTLYLSGCSKLKNVPE--TLGKVESLE  108 (108)
Q Consensus        60 ~~L~l~~~~-~~~-~lp~~~~~l------~~L~~l~l~~~~~~~~~p~--~~~~l~~L~  108 (108)
                      +.|++++|. ... .+|+.++.+      ++|+++++++|... .+|.  .++++++|+
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG  333 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence            888888865 333 578777665      78888888886554 7777  677776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.24  E-value=4.9e-11  Score=89.02  Aligned_cols=89  Identities=19%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             CCcEEeccCCcCCCcCCcccC--CccccccccCcceeEEEecCccccccCcccccCCCCcEEecc------CCcCCcccc
Q 046123            3 SLKTLVLSGCLKLKKFPDIVG--KSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLK------DCKNLKSLP   74 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~--~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~------~~~~~~~lp   74 (108)
                      +|++|++++ +.++.+|..+.  .+.+|   +     .|++++|++..+|..+..+++|+.|+++      +|...+.+|
T Consensus       489 ~L~~L~Ls~-N~l~~lp~~~~~~~l~~L---~-----~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          489 LLTSIDLRF-NKLTKLSDDFRATTLPYL---V-----GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             GCCEEECCS-SCCCBCCGGGSTTTCTTC---C-----EEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             CccEEECcC-CcCCccChhhhhccCCCc---C-----EEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence            566677766 35556666554  66666   6     7777777776666666677777777773      333345566


Q ss_pred             ccccCCCCCCEEeecCCCCCcccccCc
Q 046123           75 STINGLRSLRTLYLSGCSKLKNVPETL  101 (108)
Q Consensus        75 ~~~~~l~~L~~l~l~~~~~~~~~p~~~  101 (108)
                      .+++.+++|++|++++|.. +.+|..+
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~  585 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDI-RKVNEKI  585 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred             HHHhcCCCCCEEECCCCcC-CccCHhH
Confidence            6677777777777777544 6666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.24  E-value=3.9e-11  Score=87.30  Aligned_cols=95  Identities=25%  Similarity=0.258  Sum_probs=54.7

Q ss_pred             CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-cccC
Q 046123            3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~   79 (108)
                      ++++|++++| .++.+ |..+..+.+|   +     +|++++|++..++ ..+..+++|+.|++++|. +..+|+ .+++
T Consensus        27 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~   96 (549)
T 2z81_A           27 AMKSLDLSFN-KITYIGHGDLRACANL---Q-----VLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGP   96 (549)
T ss_dssp             TCCEEECCSS-CCCEECSSTTSSCTTC---C-----EEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTT
T ss_pred             CccEEECcCC-ccCccChhhhhcCCcc---c-----EEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhcc
Confidence            5667777773 45554 3556666666   6     6666666666544 346666666666666643 444333 3666


Q ss_pred             CCCCCEEeecCCCCCc-ccccCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLK-NVPETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~-~~p~~~~~l~~L  107 (108)
                      +++|++|++++|.... ..|..++++++|
T Consensus        97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             CTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             CCCCcEEECCCCcccccchhhhhhccCCc
Confidence            6666666666654333 234455555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.23  E-value=7.4e-11  Score=74.84  Aligned_cols=83  Identities=25%  Similarity=0.399  Sum_probs=71.2

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      +++++|++++ +.++.+ |..+..+.+|   +     +|++++|+++.+|+. |..+++|+.|++++| .+..+|+ .|.
T Consensus        30 ~~l~~L~L~~-N~i~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~   99 (170)
T 3g39_A           30 TTTQVLYLYD-NQITKLEPGVFDRLTQL---T-----RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD   99 (170)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTC---S-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCcEEEcCC-CcCCccChhhhcCcccC---C-----EEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhc
Confidence            4689999999 578777 5678889999   9     999999999988876 789999999999994 6777776 588


Q ss_pred             CCCCCCEEeecCCCCC
Q 046123           79 GLRSLRTLYLSGCSKL   94 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~   94 (108)
                      .+++|+++++++|...
T Consensus       100 ~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A          100 NLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TCTTCCEEECCSSCBC
T ss_pred             CCCCCCEEEeCCCCCC
Confidence            9999999999997653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.23  E-value=5.6e-11  Score=83.18  Aligned_cols=79  Identities=19%  Similarity=0.172  Sum_probs=36.4

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +|++|++++ +.++.++ ..+..+.+|   +     .|++++|++..+++. |..+++|+.|++++|......|..|.++
T Consensus        65 ~L~~L~L~~-N~i~~i~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  135 (361)
T 2xot_A           65 NLHSLLLSH-NHLNFISSEAFVPVPNL---R-----YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM  135 (361)
T ss_dssp             TCCEEECCS-SCCCEECTTTTTTCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             ccCEEECCC-CcCCccChhhccCCCCC---C-----EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc
Confidence            444455544 2344433 334444444   4     555555555544332 4455555555555532222223345555


Q ss_pred             CCCCEEeecC
Q 046123           81 RSLRTLYLSG   90 (108)
Q Consensus        81 ~~L~~l~l~~   90 (108)
                      ++|++|++++
T Consensus       136 ~~L~~L~L~~  145 (361)
T 2xot_A          136 AQLQKLYLSQ  145 (361)
T ss_dssp             TTCCEEECCS
T ss_pred             ccCCEEECCC
Confidence            5555555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.23  E-value=2.9e-11  Score=79.94  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=33.6

Q ss_pred             CcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCcc-ccccCc-ccccCCCCcEEeccCCcCCcccc-ccccC
Q 046123            4 LKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTA-IRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STING   79 (108)
Q Consensus         4 L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~-~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~   79 (108)
                      +++|++++ +.++.+|+ .+..+.+|   +     .+++++|. +..+++ .|.++++|+.|++++|+.+..+| ..|.+
T Consensus        33 l~~L~l~~-n~l~~i~~~~~~~l~~L---~-----~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~  103 (239)
T 2xwt_C           33 TQTLKLIE-THLRTIPSHAFSNLPNI---S-----RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE  103 (239)
T ss_dssp             CCEEEEES-CCCSEECTTTTTTCTTC---C-----EEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred             ccEEEEeC-CcceEECHHHccCCCCC---c-----EEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence            44455554 23444432 34444444   4     44444443 444433 24444444444444422333333 23344


Q ss_pred             CCCCCEEeecC
Q 046123           80 LRSLRTLYLSG   90 (108)
Q Consensus        80 l~~L~~l~l~~   90 (108)
                      +++|+++++++
T Consensus       104 l~~L~~L~l~~  114 (239)
T 2xwt_C          104 LPLLKFLGIFN  114 (239)
T ss_dssp             CTTCCEEEEEE
T ss_pred             CCCCCEEeCCC
Confidence            44444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.23  E-value=6.1e-11  Score=83.00  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             CCcEEeccCCcCCCcCC-cccC-CccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccc-ccc
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVG-KSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~-~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      .++.|++++ +.++.++ ..+. .+.+|   +     .|++++|++..+++ .|..+++|+.|++++| .+..+++ .|.
T Consensus        40 ~l~~L~Ls~-N~l~~l~~~~~~~~l~~L---~-----~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~  109 (361)
T 2xot_A           40 YTALLDLSH-NNLSRLRAEWTPTRLTNL---H-----SLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFS  109 (361)
T ss_dssp             TCSEEECCS-SCCCEECTTSSSSCCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred             CCCEEECCC-CCCCccChhhhhhccccc---C-----EEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhC
Confidence            578899999 5777776 4454 78889   8     99999999998775 4999999999999995 4666654 688


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++.+|++|++++|......|..|.++++|+
T Consensus       110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  139 (361)
T 2xot_A          110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQ  139 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence            999999999999776655577788777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.23  E-value=4.5e-11  Score=91.61  Aligned_cols=98  Identities=20%  Similarity=0.156  Sum_probs=48.0

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCcccccc--c
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPST--I   77 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~--~   77 (108)
                      ++|++|++++|.....+ |..+..+.+|   +     +|++++|.+..+ |..|.++++|+.|++++|......|+.  +
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L---~-----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNL---R-----ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTC---C-----EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCC---C-----EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence            34455555554333343 3444555555   5     555555555533 444555555555555554333333332  5


Q ss_pred             cCCCCCCEEeecCCCCCcccc-cCcCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVP-ETLGKVESL  107 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L  107 (108)
                      +++++|++|++++|......+ ..|+++++|
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            555556666666544433322 344555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.22  E-value=3.3e-11  Score=83.78  Aligned_cols=94  Identities=23%  Similarity=0.297  Sum_probs=59.5

Q ss_pred             CCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCcccccc-ccC
Q 046123            3 SLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPST-ING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~   79 (108)
                      ++++|++++ +.++.++. .+..+.+|   +     .|++++|.+..++ ..+..+++|+.|++++| .+..+|+. +++
T Consensus        53 ~L~~L~l~~-n~i~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~  122 (353)
T 2z80_A           53 AVKSLDLSN-NRITYISNSDLQRCVNL---Q-----ALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP  122 (353)
T ss_dssp             TCCEEECTT-SCCCEECTTTTTTCTTC---C-----EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT
T ss_pred             cCcEEECCC-CcCcccCHHHhccCCCC---C-----EEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC
Confidence            567777777 45666653 56666777   7     7777777777554 34777777777777773 45555554 666


Q ss_pred             CCCCCEEeecCCCCCccccc--CcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPE--TLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~--~~~~l~~L  107 (108)
                      +++|+++++++|. +..+|.  .++++++|
T Consensus       123 l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A          123 LSSLTFLNLLGNP-YKTLGETSLFSHLTKL  151 (353)
T ss_dssp             CTTCSEEECTTCC-CSSSCSSCSCTTCTTC
T ss_pred             CccCCEEECCCCC-CcccCchhhhccCCCC
Confidence            7777777777743 344554  45555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.22  E-value=3.1e-11  Score=87.82  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCc-cccccc
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLK-SLPSTI   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~-~lp~~~   77 (108)
                      +++|++|++++| .++.++ ..+..+.+|   +     +|++++|++..+++. ++.+++|+.|++++|.... ..|+.+
T Consensus        49 l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           49 CANLQVLILKSS-RINTIEGDAFYSLGSL---E-----HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             CTTCCEEECTTS-CCCEECTTTTTTCTTC---C-----EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             CCcccEEECCCC-CcCccChhhccccccC---C-----EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence            356788888884 555554 567777777   7     888888887766655 7778888888888754222 345667


Q ss_pred             cCCCCCCEEeecCCCCCcccc-cCcCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVP-ETLGKVESL  107 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L  107 (108)
                      +++++|+++++++|.....+| ..++++++|
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             hccCCccEEECCCCccccccCHhhhhccccc
Confidence            777777777777766555555 345555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.22  E-value=2.5e-11  Score=83.37  Aligned_cols=86  Identities=17%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             CCCcEEeccCCcCCCcCCccc--CCccccccccCcceeEEEecCccccccCcccccC-----CCCcEEeccCCcCCcccc
Q 046123            2 KSLKTLVLSGCLKLKKFPDIV--GKSSQRKLQAGISSWSFILEGTAIRGLPASIELL-----SGSVLLNLKDCKNLKSLP   74 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~--~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~~~lp   74 (108)
                      ++|++|++++|......|..+  ..+.+|   +     +|++++|++..+|..+..+     ++|+.|++++|. +..++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~  165 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDL---N-----ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS  165 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCC---S-----EEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCc---c-----EEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch
Confidence            567888888853333566654  667777   7     8888888887666666665     778888888754 44443


Q ss_pred             -ccccCCCCCCEEeecCCCCCcc
Q 046123           75 -STINGLRSLRTLYLSGCSKLKN   96 (108)
Q Consensus        75 -~~~~~l~~L~~l~l~~~~~~~~   96 (108)
                       +.++.+++|+++++++|...+.
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHH
T ss_pred             HHHhccCCCCCEEECCCCCcCcc
Confidence             6777778888888887655443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.22  E-value=8e-11  Score=84.13  Aligned_cols=70  Identities=16%  Similarity=0.126  Sum_probs=35.8

Q ss_pred             EEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      .|++++|.+..+ |..+..+++|+.|++++|......+..|.++++|++|++++|......+..|..+++|
T Consensus       211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            555555555544 3335555666666666533222233455666666666666654333333344555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.21  E-value=3.6e-11  Score=87.12  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=67.0

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      +++++|++++| .++.++ ..+..+.+|   +     +|++++|++..+ |..+..+++|++|++++| .+..+|..  .
T Consensus        21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQN-YISELWTSDILSLSKL---R-----ILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--P   88 (520)
T ss_dssp             TTCSEEECCSS-CCCCCCHHHHTTCTTC---C-----EEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--C
T ss_pred             ccccEEECCCC-cccccChhhccccccc---c-----EEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--c
Confidence            35777888874 566655 566777777   7     888888887755 556778888888888874 56677765  6


Q ss_pred             CCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLK-NVPETLGKVESLE  108 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~  108 (108)
                      +++|++|++++|.... .+|..|+++++|+
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~  118 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLK  118 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred             cCCccEEeccCCccccccchhhhccCCcce
Confidence            7778888888765544 4566777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.21  E-value=1.2e-10  Score=83.23  Aligned_cols=99  Identities=19%  Similarity=0.189  Sum_probs=76.9

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      +++|+.|++++|+.+..++ ..+..+.+|   +     .|++++|.+..+|. +..+++|+.|++++|......|..|.+
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L---~-----~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  229 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNL---R-----YLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG  229 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSC---C-----EEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred             CcccCEeCCCCCCCcceeCcchhhccccc---C-----eecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhcc
Confidence            4678889998877787776 466778888   8     99999998888774 788889999999986444444678888


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      +++|++|++++|......+..|.++++|+
T Consensus       230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERNAFDNLQSLV  258 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred             CccCCEEECCCCceeEEChhhhcCCCCCC
Confidence            89999999998766666666777777664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.21  E-value=9.6e-11  Score=83.97  Aligned_cols=70  Identities=19%  Similarity=0.153  Sum_probs=36.9

Q ss_pred             EEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           38 SFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        38 ~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      .|++++|.+..+ |..+..+++|+.|++++|......|..|.++++|++|++++|......+..|..+++|
T Consensus       222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence            555555555544 3335566666666666643333334456666666666666654333223345555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.20  E-value=1.2e-10  Score=85.73  Aligned_cols=96  Identities=14%  Similarity=0.029  Sum_probs=56.2

Q ss_pred             CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++++|++++ +.++.+ |..+..+.+|   +     +|++++|++..+ |..|.++++|+.|++++|......|.+++++
T Consensus        34 ~l~~L~Ls~-n~i~~~~~~~~~~l~~L---~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           34 STECLEFSF-NVLPTIQNTTFSRLINL---T-----FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             TCCEEECTT-CCCSEECTTTSTTCTTC---S-----EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             cCcEEEccC-CccCcCChhHhccCccc---e-----EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence            456677776 345554 4556666666   6     677777666644 4446666677777776644333445566666


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      ++|+++++++|......|..++++++|
T Consensus       105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A          105 KALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             TTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             ccccEeeccccCcccCCcchhccCCcc
Confidence            666666666654433334445555444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.19  E-value=9.9e-11  Score=85.83  Aligned_cols=95  Identities=21%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      +++++|++++ +.++.++ ..+..+.+|   +     +|++++|++..+ |..|.++++|+.|++++| .+..+|..  .
T Consensus        52 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQ-NSISELRMPDISFLSEL---R-----VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--P  119 (562)
T ss_dssp             TTCCEEECCS-SCCCCCCGGGTTTCTTC---C-----EEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--C
T ss_pred             CCcCEEECCC-CCccccChhhhccCCCc---c-----EEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--c
Confidence            3577788887 4566665 567777777   7     888888888766 445777888888888874 46677765  6


Q ss_pred             CCCCCEEeecCCCCCc-ccccCcCCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLK-NVPETLGKVESLE  108 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~-~~p~~~~~l~~L~  108 (108)
                      +++|++|++++|.... ..|..|+++++|+
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~  149 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLT  149 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred             cccCCEEECCCCCccccCchHhhcccCccc
Confidence            7778888888765433 2346677666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.18  E-value=1.8e-10  Score=82.80  Aligned_cols=97  Identities=19%  Similarity=0.234  Sum_probs=80.4

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      +.+++|++++ +.++.+ +..+..+.+|   +     +|++++|.+..+ |..|.++++|+.|++++| .+..+|. .|+
T Consensus        32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L---~-----~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  101 (477)
T 2id5_A           32 TETRLLDLGK-NRIKTLNQDEFASFPHL---E-----ELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT  101 (477)
T ss_dssp             TTCSEEECCS-SCCCEECTTTTTTCTTC---C-----EEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSST
T ss_pred             CCCcEEECCC-CccceECHhHccCCCCC---C-----EEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCccccc
Confidence            3688999999 567776 4678889999   9     999999999966 666999999999999994 5777775 578


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++++|++|++++|......|..|+++++|+
T Consensus       102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A          102 GLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCccccCChhHccccccCC
Confidence            899999999999877666677788887764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.17  E-value=2.2e-10  Score=82.12  Aligned_cols=79  Identities=23%  Similarity=0.262  Sum_probs=38.6

Q ss_pred             CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccC-cccccCCCCcEEeccCCcCCccccc-cccC
Q 046123            3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-ASIELLSGSVLLNLKDCKNLKSLPS-TING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~   79 (108)
                      ++++|++++| .++.+ +..+..+.+|   +     .|++++|.+..++ ..|.++++|+.|++++| .+..+|+ .++.
T Consensus        76 ~l~~L~L~~n-~i~~~~~~~~~~l~~L---~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  145 (452)
T 3zyi_A           76 NTRYLNLMEN-NIQMIQADTFRHLHHL---E-----VLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEY  145 (452)
T ss_dssp             TCSEEECCSS-CCCEECTTTTTTCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSS
T ss_pred             CccEEECcCC-cCceECHHHcCCCCCC---C-----EEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcc
Confidence            3555555552 34443 3445555555   5     5555555555443 23555555555555553 2333333 2444


Q ss_pred             CCCCCEEeecCC
Q 046123           80 LRSLRTLYLSGC   91 (108)
Q Consensus        80 l~~L~~l~l~~~   91 (108)
                      +++|++|++++|
T Consensus       146 l~~L~~L~L~~N  157 (452)
T 3zyi_A          146 LSKLRELWLRNN  157 (452)
T ss_dssp             CTTCCEEECCSC
T ss_pred             cCCCCEEECCCC
Confidence            555555555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=2.2e-10  Score=79.33  Aligned_cols=82  Identities=13%  Similarity=0.095  Sum_probs=51.2

Q ss_pred             EEeccCCcCCCcCCcccCCccccccccCcceeEEEecC-ccccccCc-ccccCCCCcEEeccCCcCCcccc-ccccCCCC
Q 046123            6 TLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEG-TAIRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STINGLRS   82 (108)
Q Consensus         6 ~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~-~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~   82 (108)
                      .++.++++.++.+|. +..+.+|   +     .|++++ |.+..+++ .|.++++|+.|+|++| .+..+| ..|+++++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L---~-----~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~   81 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENL---T-----ELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPR   81 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCC---S-----EEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSC
T ss_pred             EEEcCCCCCCCccCC-CCCCCCe---e-----EEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcC
Confidence            345555325666776 6666667   6     777775 77776654 3677777777777774 344443 45677777


Q ss_pred             CCEEeecCCCCCcccc
Q 046123           83 LRTLYLSGCSKLKNVP   98 (108)
Q Consensus        83 L~~l~l~~~~~~~~~p   98 (108)
                      |++|++++|.. ..+|
T Consensus        82 L~~L~l~~N~l-~~~~   96 (347)
T 2ifg_A           82 LSRLNLSFNAL-ESLS   96 (347)
T ss_dssp             CCEEECCSSCC-SCCC
T ss_pred             CCEEeCCCCcc-ceeC
Confidence            77777777543 3444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.17  E-value=1.6e-10  Score=89.44  Aligned_cols=89  Identities=19%  Similarity=0.165  Sum_probs=57.0

Q ss_pred             CCcEEeccCCcCCCcCCcccC--CccccccccCcceeEEEecCccccccCcccccCCCCcEEeccC------CcCCcccc
Q 046123            3 SLKTLVLSGCLKLKKFPDIVG--KSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKD------CKNLKSLP   74 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~--~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~------~~~~~~lp   74 (108)
                      +|+.|++++| .+..+|..+.  .+++|   +     .|++++|++..+|..+..+++|+.|++++      |.....+|
T Consensus       729 ~L~~L~Ls~N-~L~~lp~~l~~~~l~~L---~-----~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip  799 (876)
T 4ecn_A          729 LLTTIDLRFN-KLTSLSDDFRATTLPYL---S-----NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP  799 (876)
T ss_dssp             GCCEEECCSS-CCCCCCGGGSTTTCTTC---C-----EEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred             CccEEECCCC-CCccchHHhhhccCCCc---C-----EEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence            5666666663 5556666555  56666   6     77777777666666666777777777754      33345566


Q ss_pred             ccccCCCCCCEEeecCCCCCcccccCc
Q 046123           75 STINGLRSLRTLYLSGCSKLKNVPETL  101 (108)
Q Consensus        75 ~~~~~l~~L~~l~l~~~~~~~~~p~~~  101 (108)
                      .+++.+++|++|++++|.. +.+|..+
T Consensus       800 ~~l~~L~~L~~L~Ls~N~L-~~Ip~~l  825 (876)
T 4ecn_A          800 TGITTCPSLIQLQIGSNDI-RKVDEKL  825 (876)
T ss_dssp             TTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred             HHHhcCCCCCEEECCCCCC-CccCHhh
Confidence            6676777777777777544 6666543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.16  E-value=1.4e-11  Score=84.74  Aligned_cols=94  Identities=14%  Similarity=0.101  Sum_probs=51.8

Q ss_pred             CCCcEEeccCCcCCCcC-Cccc-CCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIV-GKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~-~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++|++|++++| .++.+ +..+ ..+.+|   +     .|++++|.+..++. ...+++|+.|++++ +.+..+|+.+..
T Consensus       144 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L---~-----~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~  212 (317)
T 3o53_A          144 SRVQYLDLKLN-EIDTVNFAELAASSDTL---E-----HLNLQYNFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQS  212 (317)
T ss_dssp             SSEEEEECTTS-CCCEEEGGGGGGGTTTC---C-----EEECTTSCCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGG
T ss_pred             CCCCEEECCCC-CCCcccHHHHhhccCcC---C-----EEECCCCcCccccc-ccccccCCEEECCC-CcCCcchhhhcc
Confidence            45667777773 45444 2333 245566   6     66666666665533 23356666666666 345555555666


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +++|+++++++| .+..+|..+..+++|
T Consensus       213 l~~L~~L~L~~N-~l~~l~~~~~~l~~L  239 (317)
T 3o53_A          213 AAGVTWISLRNN-KLVLIEKALRFSQNL  239 (317)
T ss_dssp             GTTCSEEECTTS-CCCEECTTCCCCTTC
T ss_pred             cCcccEEECcCC-cccchhhHhhcCCCC
Confidence            666666666664 334555555555444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.16  E-value=1.8e-10  Score=88.23  Aligned_cols=98  Identities=18%  Similarity=0.149  Sum_probs=80.0

Q ss_pred             CCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccc-ccc-CcccccCCCCcEEeccCCcCCcccccccc
Q 046123            2 KSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAI-RGL-PASIELLSGSVLLNLKDCKNLKSLPSTIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~-~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~   78 (108)
                      +++++|++++| .++.+ |..+..+.+|   +     +|++++|.. ..+ |..|.++++|+.|++++|......|++|+
T Consensus        24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L---~-----~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~   94 (844)
T 3j0a_A           24 NTTERLLLSFN-YIRTVTASSFPFLEQL---Q-----LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ   94 (844)
T ss_dssp             TTCCEEEEESC-CCCEECSSSCSSCCSC---S-----EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred             CCcCEEECCCC-cCCccChhHCcccccC---e-----EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence            57899999994 66665 6788899999   9     999999954 466 56699999999999999665555688999


Q ss_pred             CCCCCCEEeecCCCCCcccccC--cCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPET--LGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~--~~~l~~L~  108 (108)
                      ++++|++|++++|......|..  ++++++|+
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             CCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            9999999999998777666654  78887775

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.16  E-value=2.5e-10  Score=72.37  Aligned_cols=87  Identities=24%  Similarity=0.367  Sum_probs=72.1

Q ss_pred             CCCCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccc-c
Q 046123            1 MKSLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPST-I   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~-~   77 (108)
                      +++|++|++++ +.++.+|. .+..+.+|   +     .|++++|.++.+|+. +..+++|+.|++++| .+..+|+. +
T Consensus        51 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L---~-----~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~  120 (177)
T 2o6r_A           51 LTQLTKLSLSQ-NQIQSLPDGVFDKLTKL---T-----ILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIF  120 (177)
T ss_dssp             CTTCSEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred             cccccEEECCC-CcceEeChhHccCCCcc---C-----EEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHh
Confidence            46799999999 57888774 46788999   9     999999999988766 789999999999995 56777765 5


Q ss_pred             cCCCCCCEEeecCCCCCccc
Q 046123           78 NGLRSLRTLYLSGCSKLKNV   97 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~   97 (108)
                      ..+++|+++++++|......
T Consensus       121 ~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          121 DRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTCTTCCEEECCSSCBCCCH
T ss_pred             cCCcccCEEEecCCCeeccC
Confidence            78999999999998765443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.15  E-value=3.2e-10  Score=83.40  Aligned_cols=82  Identities=22%  Similarity=0.250  Sum_probs=46.1

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccc-cccC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPS-TING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~   79 (108)
                      ++|++|++++ +.++.+|..+..+.+|   +     +|++++|.+..+ |..+..+++|+.|++++|.....+|. .++.
T Consensus       278 ~~L~~L~l~~-n~l~~lp~~l~~l~~L---~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          278 SGLQELDLTA-THLSELPSGLVGLSTL---K-----KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             TTCSEEECTT-SCCSCCCSSCCSCTTC---C-----EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             cCCCEEeccC-CccCCCChhhcccccC---C-----EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            4566666666 3566666666666666   6     666666666644 33455556666666665443334433 2445


Q ss_pred             CCCCCEEeecCCC
Q 046123           80 LRSLRTLYLSGCS   92 (108)
Q Consensus        80 l~~L~~l~l~~~~   92 (108)
                      +++|+++++++|.
T Consensus       349 l~~L~~L~l~~n~  361 (606)
T 3t6q_A          349 LENLRELDLSHDD  361 (606)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             cCcCCEEECCCCc
Confidence            5555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.15  E-value=1.3e-10  Score=76.77  Aligned_cols=98  Identities=11%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecC-ccccccCc-ccccCCCCcEEeccCCcCCccccccc
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEG-TAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTI   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~-~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~   77 (108)
                      +++|++|++++|..++.++ ..+..+.+|   +     .+++++ |.++.+++ .|..+++|+.|++++| .+..+|+ +
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L---~-----~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~  123 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKV---T-----HIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-L  123 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTC---C-----EEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-C
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCC---c-----EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-c
Confidence            4679999999954488886 467888999   9     999998 99998875 4889999999999994 5777887 8


Q ss_pred             cCCCCCC---EEeecCCCCCccccc-CcCCCCCCC
Q 046123           78 NGLRSLR---TLYLSGCSKLKNVPE-TLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~---~l~l~~~~~~~~~p~-~~~~l~~L~  108 (108)
                      +.+.+|+   ++++++|..+..+|. .|+++++|+
T Consensus       124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~  158 (239)
T 2xwt_C          124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET  158 (239)
T ss_dssp             TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred             ccccccccccEEECCCCcchhhcCcccccchhcce
Confidence            8888888   999999745666664 577777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.15  E-value=2.3e-10  Score=88.56  Aligned_cols=97  Identities=15%  Similarity=0.156  Sum_probs=72.6

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCc--------cccccccCcceeEEEecCccccccCcccc--cCCCCcEEeccCCcCCc
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKS--------SQRKLQAGISSWSFILEGTAIRGLPASIE--LLSGSVLLNLKDCKNLK   71 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~--------~~L~~~~~~~~~~l~l~~~~~~~~p~~~~--~l~~L~~L~l~~~~~~~   71 (108)
                      ++|+.|++++ +.+..+|..+...        ++|   +     .|++++|++..+|..+.  .+++|+.|++++| .+.
T Consensus       697 ~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L---~-----~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~  766 (876)
T 4ecn_A          697 SPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLL---T-----TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFS  766 (876)
T ss_dssp             CCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGC---C-----EEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCS
T ss_pred             CCCCEEECCC-CcCCccChHHhccccccccccCCc---c-----EEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCC
Confidence            5677788877 4566776544332        266   6     88888888888888776  8888999999885 455


Q ss_pred             cccccccCCCCCCEEeecC------CCCCcccccCcCCCCCCC
Q 046123           72 SLPSTINGLRSLRTLYLSG------CSKLKNVPETLGKVESLE  108 (108)
Q Consensus        72 ~lp~~~~~l~~L~~l~l~~------~~~~~~~p~~~~~l~~L~  108 (108)
                      .+|..++.+++|+.|++++      |.....+|..++++++|+
T Consensus       767 ~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~  809 (876)
T 4ecn_A          767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI  809 (876)
T ss_dssp             SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred             ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence            6888888888899998876      556677888887777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.14  E-value=4.1e-10  Score=77.50  Aligned_cols=80  Identities=21%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             CCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +|++|++++| .++.+ |..+..+.+|   +     .|++++|.+..+++ .+..+++|+.|++++| .+..+|.++..+
T Consensus       193 ~L~~L~l~~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l  262 (330)
T 1xku_A          193 SLTELHLDGN-KITKVDAASLKGLNNL---A-----KLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH  262 (330)
T ss_dssp             TCSEEECTTS-CCCEECTGGGTTCTTC---C-----EEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTC
T ss_pred             cCCEEECCCC-cCCccCHHHhcCCCCC---C-----EEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccC
Confidence            3444444442 33333 3444445555   5     66666666554433 3555666666666663 345566656666


Q ss_pred             CCCCEEeecCCC
Q 046123           81 RSLRTLYLSGCS   92 (108)
Q Consensus        81 ~~L~~l~l~~~~   92 (108)
                      ++|+++++++|.
T Consensus       263 ~~L~~L~l~~N~  274 (330)
T 1xku_A          263 KYIQVVYLHNNN  274 (330)
T ss_dssp             SSCCEEECCSSC
T ss_pred             CCcCEEECCCCc
Confidence            666666666643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.14  E-value=2.6e-10  Score=85.01  Aligned_cols=97  Identities=25%  Similarity=0.212  Sum_probs=79.7

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      +++++|++++ +.++.++ ..+..+.+|   +     +|++++|.+..+ |..+..+++|+.|++++| .+..+|+ +|+
T Consensus        25 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L---~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~   94 (680)
T 1ziw_A           25 TNITVLNLTH-NQLRRLPAANFTRYSQL---T-----SLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA   94 (680)
T ss_dssp             TTCSEEECCS-SCCCCCCGGGGGGGTTC---S-----EEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCcEEECCC-CCCCCcCHHHHhCCCcC---c-----EEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence            3689999999 5677776 468888999   9     999999999966 455899999999999995 5777776 689


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++++|+++++++|......|..|+++++|+
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             cCCCCCEEECCCCccCccChhHccccCCCC
Confidence            999999999999766554557788888774

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.12  E-value=4e-10  Score=79.17  Aligned_cols=86  Identities=15%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccccc
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTIN   78 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~   78 (108)
                      +++|++|++++| .++.++ ..+..+.+|   +     +|++++|.+..+|+. +..+++|+.|++++|......|..++
T Consensus        92 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  162 (390)
T 3o6n_A           92 AHTIQKLYMGFN-AIRYLPPHVFQNVPLL---T-----VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ  162 (390)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred             CCCcCEEECCCC-CCCcCCHHHhcCCCCC---C-----EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence            467999999994 677765 667889999   9     999999999988877 68999999999999654333455789


Q ss_pred             CCCCCCEEeecCCCCCc
Q 046123           79 GLRSLRTLYLSGCSKLK   95 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~   95 (108)
                      .+++|+++++++|....
T Consensus       163 ~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          163 ATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             SCTTCCEEECCSSCCSB
T ss_pred             CCCCCCEEECCCCcCCc
Confidence            99999999999975443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=3.6e-10  Score=83.69  Aligned_cols=86  Identities=15%  Similarity=0.203  Sum_probs=71.2

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccccccc
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTIN   78 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~   78 (108)
                      +++|++|++++| .++.+| ..++.+.+|   +     +|++++|.+..+|+. +..+++|+.|++++|......|..++
T Consensus        98 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L---~-----~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  168 (597)
T 3oja_B           98 AHTIQKLYMGFN-AIRYLPPHVFQNVPLL---T-----VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ  168 (597)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             CCCCCEEECCCC-cCCCCCHHHHcCCCCC---C-----EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence            467999999995 577775 566889999   9     999999999988877 68999999999999654444556799


Q ss_pred             CCCCCCEEeecCCCCCc
Q 046123           79 GLRSLRTLYLSGCSKLK   95 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~   95 (108)
                      .+++|++|++++|....
T Consensus       169 ~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          169 ATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TCTTCCEEECTTSCCSB
T ss_pred             cCCcCcEEECcCCCCCC
Confidence            99999999999975543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.12  E-value=6.7e-10  Score=74.82  Aligned_cols=52  Identities=25%  Similarity=0.369  Sum_probs=26.0

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCC
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~   92 (108)
                      .|++++|+++.++ .+..+++|+.|++++| .+..++ .++.+++|+++++++|.
T Consensus       110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          110 RLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC
T ss_pred             EEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc
Confidence            4444444444332 3455555555555552 344443 35555556666665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.11  E-value=4.9e-10  Score=77.24  Aligned_cols=77  Identities=16%  Similarity=0.169  Sum_probs=43.3

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++++|++++ +.++.++ ..+..+.+|   +     +|++++|.+..+ |..+..+++|+.|++++| .+..+|..+.  
T Consensus        55 ~l~~L~l~~-n~i~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--  122 (332)
T 2ft3_A           55 DTTLLDLQN-NDISELRKDDFKGLQHL---Y-----ALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--  122 (332)
T ss_dssp             TCCEEECCS-SCCCEECTTTTTTCTTC---C-----EEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--
T ss_pred             CCeEEECCC-CcCCccCHhHhhCCCCC---c-----EEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--
Confidence            456666666 3455543 455566666   6     666666666644 444666666666666663 3445554433  


Q ss_pred             CCCCEEeecCC
Q 046123           81 RSLRTLYLSGC   91 (108)
Q Consensus        81 ~~L~~l~l~~~   91 (108)
                      ++|+++++++|
T Consensus       123 ~~L~~L~l~~n  133 (332)
T 2ft3_A          123 SSLVELRIHDN  133 (332)
T ss_dssp             TTCCEEECCSS
T ss_pred             ccCCEEECCCC
Confidence            44555555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.11  E-value=5.1e-10  Score=77.01  Aligned_cols=63  Identities=22%  Similarity=0.231  Sum_probs=37.4

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccc
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPS   75 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~   75 (108)
                      .+++|++++ +.++.++ ..+..+.+|   +     +|++++|.+..+ |..+..+++|+.|++++| .+..+|.
T Consensus        53 ~l~~L~L~~-n~i~~~~~~~~~~l~~L---~-----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~  117 (330)
T 1xku_A           53 DTALLDLQN-NKITEIKDGDFKNLKNL---H-----TLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE  117 (330)
T ss_dssp             TCCEEECCS-SCCCCBCTTTTTTCTTC---C-----EEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS
T ss_pred             CCeEEECCC-CcCCEeChhhhccCCCC---C-----EEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh
Confidence            456666666 3455554 355666666   6     666666666654 445666666666666663 3444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.10  E-value=2.3e-10  Score=82.86  Aligned_cols=84  Identities=13%  Similarity=0.092  Sum_probs=70.0

Q ss_pred             CCCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCc-ccccccc
Q 046123            1 MKSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLK-SLPSTIN   78 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~   78 (108)
                      +++|++|++++| .++.+ |..+..+.+|   +     +|++++|++..+|..  .+++|+.|++++|.... .+|..++
T Consensus        44 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~  112 (520)
T 2z7x_B           44 LSKLRILIISHN-RIQYLDISVFKFNQEL---E-----YLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFG  112 (520)
T ss_dssp             CTTCCEEECCSS-CCCEEEGGGGTTCTTC---C-----EEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred             cccccEEecCCC-ccCCcChHHhhcccCC---C-----EEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhc
Confidence            468999999994 67666 6788899999   9     999999999988876  88999999999965443 4678899


Q ss_pred             CCCCCCEEeecCCCCCc
Q 046123           79 GLRSLRTLYLSGCSKLK   95 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~   95 (108)
                      .+++|++|++++|....
T Consensus       113 ~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B          113 NMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             GCTTCCEEEEEESSCCG
T ss_pred             cCCcceEEEecCcccch
Confidence            99999999999976543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.10  E-value=5.9e-10  Score=76.53  Aligned_cols=9  Identities=33%  Similarity=0.298  Sum_probs=3.8

Q ss_pred             CCcEEeccC
Q 046123            3 SLKTLVLSG   11 (108)
Q Consensus         3 ~L~~L~l~~   11 (108)
                      +|++|++++
T Consensus        64 ~L~~L~L~~   72 (308)
T 1h6u_A           64 NLIGLELKD   72 (308)
T ss_dssp             TCCEEECCS
T ss_pred             CCCEEEccC
Confidence            344444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.09  E-value=7.7e-10  Score=76.36  Aligned_cols=76  Identities=16%  Similarity=0.290  Sum_probs=33.7

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      +|++|++++| .++.++. +..+.+|   +     +|++++|.+..++ .+..+++|+.|++++| .+..+++ +..+++
T Consensus        67 ~L~~L~l~~n-~i~~~~~-~~~l~~L---~-----~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~  133 (347)
T 4fmz_A           67 NLEYLNLNGN-QITDISP-LSNLVKL---T-----NLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTK  133 (347)
T ss_dssp             TCCEEECCSS-CCCCCGG-GTTCTTC---C-----EEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTT
T ss_pred             CccEEEccCC-ccccchh-hhcCCcC---C-----EEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCc
Confidence            4444455442 3444433 3444444   4     4555544444432 2444455555555442 2333333 444444


Q ss_pred             CCEEeecCC
Q 046123           83 LRTLYLSGC   91 (108)
Q Consensus        83 L~~l~l~~~   91 (108)
                      |+++++++|
T Consensus       134 L~~L~l~~n  142 (347)
T 4fmz_A          134 MYSLNLGAN  142 (347)
T ss_dssp             CCEEECTTC
T ss_pred             eeEEECCCC
Confidence            444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.09  E-value=8.7e-10  Score=75.20  Aligned_cols=14  Identities=50%  Similarity=0.854  Sum_probs=5.6

Q ss_pred             ccCCCCCCEEeecC
Q 046123           77 INGLRSLRTLYLSG   90 (108)
Q Consensus        77 ~~~l~~L~~l~l~~   90 (108)
                      +..+++|+++++++
T Consensus       174 l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          174 LAGLTKLQNLYLSK  187 (291)
T ss_dssp             GTTCTTCCEEECCS
T ss_pred             hcCCCccCEEECCC
Confidence            33333444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.08  E-value=3e-10  Score=78.09  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=44.9

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++ +.++.++.. ..+.+|   +     .|++++|.+..+|+.+..+++|+.|++++| .+..+|+.+..++
T Consensus       169 ~~L~~L~L~~-N~l~~~~~~-~~l~~L---~-----~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~  237 (317)
T 3o53_A          169 DTLEHLNLQY-NFIYDVKGQ-VVFAKL---K-----TLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQ  237 (317)
T ss_dssp             TTCCEEECTT-SCCCEEECC-CCCTTC---C-----EEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCT
T ss_pred             CcCCEEECCC-CcCcccccc-cccccC---C-----EEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCC
Confidence            4555666665 344444322 234555   5     666666666655555555666666666653 4445555555556


Q ss_pred             CCCEEeecCCCCC
Q 046123           82 SLRTLYLSGCSKL   94 (108)
Q Consensus        82 ~L~~l~l~~~~~~   94 (108)
                      +|+++++++|...
T Consensus       238 ~L~~L~l~~N~~~  250 (317)
T 3o53_A          238 NLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCEEECTTCCCB
T ss_pred             CCCEEEccCCCcc
Confidence            6666666665443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.08  E-value=8.7e-10  Score=74.27  Aligned_cols=78  Identities=12%  Similarity=0.139  Sum_probs=39.0

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCC---------------
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDC---------------   67 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~---------------   67 (108)
                      +|++|++++ +.++.++ .+..+.+|   +     .|++++|++..+++ +..+++|+.|++++|               
T Consensus        42 ~L~~L~l~~-n~i~~l~-~l~~l~~L---~-----~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~  110 (263)
T 1xeu_A           42 GVQNFNGDN-SNIQSLA-GMQFFTNL---K-----ELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSR  110 (263)
T ss_dssp             TCSEEECTT-SCCCCCT-TGGGCTTC---C-----EEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCE
T ss_pred             cCcEEECcC-CCcccch-HHhhCCCC---C-----EEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccE
Confidence            455555555 2444444 33444445   4     55555555554443 444455555555442               


Q ss_pred             -----cCCccccccccCCCCCCEEeecCCC
Q 046123           68 -----KNLKSLPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        68 -----~~~~~lp~~~~~l~~L~~l~l~~~~   92 (108)
                           +.+..++ .++.+++|++|++++|.
T Consensus       111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A          111 LFLDNNELRDTD-SLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             EECCSSCCSBSG-GGTTCTTCCEEECTTSC
T ss_pred             EEccCCccCCCh-hhcCcccccEEECCCCc
Confidence                 2233333 35566666777776643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.08  E-value=1.1e-09  Score=74.68  Aligned_cols=92  Identities=22%  Similarity=0.262  Sum_probs=63.7

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +++|++|++++ +.++.++. +..+.+|   +     .|++++|++..+ +.+..+++|+.|++++| .+..+ +.++.+
T Consensus        89 l~~L~~L~l~~-n~l~~~~~-l~~l~~L---~-----~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l  155 (291)
T 1h6t_A           89 LKNLGWLFLDE-NKVKDLSS-LKDLKKL---K-----SLSLEHNGISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRL  155 (291)
T ss_dssp             CTTCCEEECCS-SCCCCGGG-GTTCTTC---C-----EEECTTSCCCCC-GGGGGCTTCCEEECCSS-CCCCC-GGGGGC
T ss_pred             CCCCCEEECCC-CcCCCChh-hccCCCC---C-----EEECCCCcCCCC-hhhcCCCCCCEEEccCC-cCCcc-hhhccC
Confidence            35788888888 45666554 6777778   7     888888888766 35777888888888874 45555 457778


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      ++|++|++++|.... ++. +..+++|
T Consensus       156 ~~L~~L~L~~N~l~~-~~~-l~~l~~L  180 (291)
T 1h6t_A          156 TKLDTLSLEDNQISD-IVP-LAGLTKL  180 (291)
T ss_dssp             TTCSEEECCSSCCCC-CGG-GTTCTTC
T ss_pred             CCCCEEEccCCcccc-chh-hcCCCcc
Confidence            888888888864433 332 5555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.08  E-value=6.2e-10  Score=76.84  Aligned_cols=86  Identities=20%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++| .++.+ +.+..+.+|   +     .+++++|.+..++ .+..+++|+.|++++|......|..++.++
T Consensus       243 ~~L~~L~l~~n-~l~~~-~~~~~l~~L---~-----~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          243 SQLTWLEIGTN-QISDI-NAVKDLTKL---K-----MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             TTCCEEECCSS-CCCCC-GGGTTCTTC---C-----EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred             CCCCEEECCCC-ccCCC-hhHhcCCCc---C-----EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence            34555555552 34443 234445555   5     6666666666553 366667777777777544444555666777


Q ss_pred             CCCEEeecCCCCCcccc
Q 046123           82 SLRTLYLSGCSKLKNVP   98 (108)
Q Consensus        82 ~L~~l~l~~~~~~~~~p   98 (108)
                      +|+++++++|......|
T Consensus       312 ~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             TCSEEECCSSSCCCCGG
T ss_pred             cCCEEEccCCccccccC
Confidence            77777777765444333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.08  E-value=8.5e-10  Score=75.73  Aligned_cols=76  Identities=20%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++ +.++.++. +..+.+|   +     .|++++|.+..+++ +..+++|+.|++++| .+..+++ +..++
T Consensus       107 ~~L~~L~l~~-n~l~~~~~-l~~l~~L---~-----~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~  173 (308)
T 1h6u_A          107 QSIKTLDLTS-TQITDVTP-LAGLSNL---Q-----VLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLS  173 (308)
T ss_dssp             TTCCEEECTT-SCCCCCGG-GTTCTTC---C-----EEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred             CCCCEEECCC-CCCCCchh-hcCCCCC---C-----EEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCC
Confidence            3555666655 24444432 4444445   4     55555554444333 444444444444442 2333333 33344


Q ss_pred             CCCEEeecC
Q 046123           82 SLRTLYLSG   90 (108)
Q Consensus        82 ~L~~l~l~~   90 (108)
                      +|+++++++
T Consensus       174 ~L~~L~l~~  182 (308)
T 1h6u_A          174 KLTTLKADD  182 (308)
T ss_dssp             TCCEEECCS
T ss_pred             CCCEEECCC
Confidence            444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=6.7e-10  Score=76.92  Aligned_cols=84  Identities=19%  Similarity=0.159  Sum_probs=69.3

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++|+.|++++++.++.+| ..+..+.+|   +     .|++++|+++.+++ .|..+++|+.|+|++ +.+..+|+.+..
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L---~-----~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~  101 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGEL---R-----NLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ  101 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCC---S-----EEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCC---C-----EEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence            569999999646788887 678899999   9     99999999997765 589999999999999 567788876544


Q ss_pred             CCCCCEEeecCCCCC
Q 046123           80 LRSLRTLYLSGCSKL   94 (108)
Q Consensus        80 l~~L~~l~l~~~~~~   94 (108)
                      ..+|++|++.+|...
T Consensus       102 ~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A          102 GLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCCCEEECCSSCCC
T ss_pred             cCCceEEEeeCCCcc
Confidence            444999999997654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.06  E-value=1.3e-10  Score=79.73  Aligned_cols=30  Identities=10%  Similarity=0.189  Sum_probs=14.3

Q ss_pred             EEEecCccccccC-cccccCCCCcEEeccCC
Q 046123           38 SFILEGTAIRGLP-ASIELLSGSVLLNLKDC   67 (108)
Q Consensus        38 ~l~l~~~~~~~~p-~~~~~l~~L~~L~l~~~   67 (108)
                      +|++++|++..++ ..+..+++|+.|++++|
T Consensus       153 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDN  183 (312)
T ss_dssp             EEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred             EEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence            5555555554333 33444555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.04  E-value=5.5e-10  Score=81.16  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=34.8

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      .|++++|.+..++. ...+++|+.|++++ +.+..+|+.++.+++|+++++++|. +..+|..++.+++|
T Consensus       173 ~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L  239 (487)
T 3oja_A          173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNL  239 (487)
T ss_dssp             EEECTTSCCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTC
T ss_pred             EEecCCCccccccc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCC
Confidence            44444444443322 22355555555555 3344555556666666666666643 33466555555444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.04  E-value=1.6e-09  Score=74.65  Aligned_cols=79  Identities=23%  Similarity=0.294  Sum_probs=41.6

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +|++|++++ +.++.++ ..+..+.+|   +     .|++++|.+..+++ .+..+++|+.|++++| .+..+|.+++.+
T Consensus       194 ~L~~L~l~~-n~i~~~~~~~l~~l~~L---~-----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l  263 (332)
T 2ft3_A          194 TLNELHLDH-NKIQAIELEDLLRYSKL---Y-----RLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDL  263 (332)
T ss_dssp             SCSCCBCCS-SCCCCCCTTSSTTCTTC---S-----CCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGC
T ss_pred             CCCEEECCC-CcCCccCHHHhcCCCCC---C-----EEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcC
Confidence            455566665 3444443 445555555   5     55555555554433 3555555555555552 344555555555


Q ss_pred             CCCCEEeecCC
Q 046123           81 RSLRTLYLSGC   91 (108)
Q Consensus        81 ~~L~~l~l~~~   91 (108)
                      ++|+++++++|
T Consensus       264 ~~L~~L~l~~N  274 (332)
T 2ft3_A          264 KLLQVVYLHTN  274 (332)
T ss_dssp             TTCCEEECCSS
T ss_pred             ccCCEEECCCC
Confidence            55555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.04  E-value=1e-09  Score=80.48  Aligned_cols=82  Identities=15%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             CCCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccc--cccc
Q 046123            1 MKSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSL--PSTI   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l--p~~~   77 (108)
                      +++|++|++++| .++.+ |..+..+.+|   +     +|++++|++..+|..  .+++|+.|++++|. +..+  |..+
T Consensus        75 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~  142 (562)
T 3a79_B           75 LSELRVLRLSHN-RIRSLDFHVFLFNQDL---E-----YLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEF  142 (562)
T ss_dssp             CTTCCEEECCSC-CCCEECTTTTTTCTTC---C-----EEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGG
T ss_pred             CCCccEEECCCC-CCCcCCHHHhCCCCCC---C-----EEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhh
Confidence            468999999994 67776 6778889999   9     999999999999877  89999999999954 5554  5789


Q ss_pred             cCCCCCCEEeecCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKL   94 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~   94 (108)
                      +++++|++|++++|...
T Consensus       143 ~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          143 GNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             GGCTTCCEEEEECSBCC
T ss_pred             cccCcccEEecCCCccc
Confidence            99999999999997544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.03  E-value=1.4e-10  Score=84.23  Aligned_cols=92  Identities=12%  Similarity=0.108  Sum_probs=71.6

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++ +.++.+|.. ..+++|   +     .|++++|.+..+|+.+..+++|+.|++++ +.+..+|+.++.++
T Consensus       169 ~~L~~L~Ls~-N~l~~~~~~-~~l~~L---~-----~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~  237 (487)
T 3oja_A          169 DTLEHLNLQY-NFIYDVKGQ-VVFAKL---K-----TLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQ  237 (487)
T ss_dssp             TTCCEEECTT-SCCCEEECC-CCCTTC---C-----EEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCT
T ss_pred             CcccEEecCC-Ccccccccc-ccCCCC---C-----EEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCC
Confidence            4667777777 345555432 346677   7     99999999999998899999999999999 45778999999999


Q ss_pred             CCCEEeecCCCCC-cccccCcCCC
Q 046123           82 SLRTLYLSGCSKL-KNVPETLGKV  104 (108)
Q Consensus        82 ~L~~l~l~~~~~~-~~~p~~~~~l  104 (108)
                      +|+++++++|... ..+|..+..+
T Consensus       238 ~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          238 NLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             TCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             CCCEEEcCCCCCcCcchHHHHHhC
Confidence            9999999998765 4555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.02  E-value=5.7e-12  Score=81.46  Aligned_cols=78  Identities=23%  Similarity=0.216  Sum_probs=44.3

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++ +.++.+| .+..+.+|   +     .|++++|.+..+|..+..+++|+.|++++| .+..+| +++.++
T Consensus        48 ~~L~~L~ls~-n~l~~l~-~~~~l~~L---~-----~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~  115 (198)
T 1ds9_A           48 KACKHLALST-NNIEKIS-SLSGMENL---R-----ILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLV  115 (198)
T ss_dssp             TTCSEEECSE-EEESCCC-CHHHHTTC---C-----EEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHH
T ss_pred             CCCCEEECCC-CCCcccc-ccccCCCC---C-----EEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCC
Confidence            4566666666 3455555 55555666   6     666666666666555555556666666653 344444 344555


Q ss_pred             CCCEEeecCC
Q 046123           82 SLRTLYLSGC   91 (108)
Q Consensus        82 ~L~~l~l~~~   91 (108)
                      +|+++++++|
T Consensus       116 ~L~~L~l~~N  125 (198)
T 1ds9_A          116 NLRVLYMSNN  125 (198)
T ss_dssp             HSSEEEESEE
T ss_pred             CCCEEECCCC
Confidence            5555555553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.99  E-value=1.7e-09  Score=77.80  Aligned_cols=78  Identities=15%  Similarity=0.267  Sum_probs=47.3

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++ +.++.+++ +..+.+|   +     +|++++|.+..+++ +..+++|+.|++++| .+..+++ ++.++
T Consensus        68 ~~L~~L~Ls~-n~l~~~~~-~~~l~~L---~-----~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~  134 (466)
T 1o6v_A           68 NNLTQINFSN-NQLTDITP-LKNLTKL---V-----DILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLT  134 (466)
T ss_dssp             TTCCEEECCS-SCCCCCGG-GTTCTTC---C-----EEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred             cCCCEEECCC-CccCCchh-hhccccC---C-----EEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCC
Confidence            4566666666 34555554 5556666   6     66666666665554 666666666666663 3445544 66666


Q ss_pred             CCCEEeecCCC
Q 046123           82 SLRTLYLSGCS   92 (108)
Q Consensus        82 ~L~~l~l~~~~   92 (108)
                      +|++|++++|.
T Consensus       135 ~L~~L~l~~n~  145 (466)
T 1o6v_A          135 NLNRLELSSNT  145 (466)
T ss_dssp             TCSEEEEEEEE
T ss_pred             CCCEEECCCCc
Confidence            66666666643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.98  E-value=4.2e-09  Score=78.63  Aligned_cols=14  Identities=50%  Similarity=0.854  Sum_probs=5.9

Q ss_pred             ccCCCCCCEEeecC
Q 046123           77 INGLRSLRTLYLSG   90 (108)
Q Consensus        77 ~~~l~~L~~l~l~~   90 (108)
                      +..+++|++|++++
T Consensus       171 l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          171 LAGLTKLQNLYLSK  184 (605)
T ss_dssp             GTTCTTCCEEECCS
T ss_pred             hccCCCCCEEECcC
Confidence            33344444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.97  E-value=3e-09  Score=76.79  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++ +.++.+| .+..+.+|   +     +|++++|.+..+|  ++.+++|+.|++++| .+..+|  ++.++
T Consensus        42 ~~L~~L~Ls~-n~l~~~~-~l~~l~~L---~-----~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~  106 (457)
T 3bz5_A           42 ATLTSLDCHN-SSITDMT-GIEKLTGL---T-----KLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLT  106 (457)
T ss_dssp             TTCCEEECCS-SCCCCCT-TGGGCTTC---S-----EEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCT
T ss_pred             CCCCEEEccC-CCcccCh-hhcccCCC---C-----EEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCC
Confidence            4567777777 3566665 45666666   6     7777777666654  566666666666663 344443  55666


Q ss_pred             CCCEEeecCCC
Q 046123           82 SLRTLYLSGCS   92 (108)
Q Consensus        82 ~L~~l~l~~~~   92 (108)
                      +|+++++++|.
T Consensus       107 ~L~~L~L~~N~  117 (457)
T 3bz5_A          107 KLTYLNCDTNK  117 (457)
T ss_dssp             TCCEEECCSSC
T ss_pred             cCCEEECCCCc
Confidence            66666666643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.96  E-value=7.6e-12  Score=80.88  Aligned_cols=86  Identities=19%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccc--cccC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPS--TING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~   79 (108)
                      ++|++|++++ +.++.+|..+..+++|   +     .|++++|++..+| .+..+++|+.|++++| .+..++.  .+..
T Consensus        70 ~~L~~L~l~~-n~l~~l~~~~~~~~~L---~-----~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~  138 (198)
T 1ds9_A           70 ENLRILSLGR-NLIKKIENLDAVADTL---E-----ELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAA  138 (198)
T ss_dssp             TTCCEEEEEE-EEECSCSSHHHHHHHC---S-----EEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTT
T ss_pred             CCCCEEECCC-CCcccccchhhcCCcC---C-----EEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhc
Confidence            6799999999 5788888877777889   9     9999999999876 6889999999999994 5666554  6888


Q ss_pred             CCCCCEEeecCCCCCcccc
Q 046123           80 LRSLRTLYLSGCSKLKNVP   98 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p   98 (108)
                      +++|+++++++|......|
T Consensus       139 l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          139 LDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             TTTCSEEEECSCHHHHHHH
T ss_pred             CCCCCEEEecCCccccccc
Confidence            9999999999976544444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.93  E-value=1e-09  Score=75.09  Aligned_cols=90  Identities=19%  Similarity=0.121  Sum_probs=44.7

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccc---cCcc--cccCCCCcEEeccCCcCCccccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRG---LPAS--IELLSGSVLLNLKDCKNLKSLPS   75 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~---~p~~--~~~l~~L~~L~l~~~~~~~~lp~   75 (108)
                      ++|++|++++| .+..++ ..+..+.+|   +     +|++++|++..   ++..  +..+++|+.|++++| .+..++.
T Consensus       145 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~  214 (310)
T 4glp_A          145 PGLKVLSIAQA-HSPAFSCEQVRAFPAL---T-----SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTG  214 (310)
T ss_dssp             SCCCEEEEECC-SSCCCCTTSCCCCTTC---C-----EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHH
T ss_pred             cCCCEEEeeCC-CcchhhHHHhccCCCC---C-----EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHH
Confidence            45666666663 444443 455566666   6     66666665432   2211  244555555555553 2333332


Q ss_pred             ----cccCCCCCCEEeecCCCCCcccccCc
Q 046123           76 ----TINGLRSLRTLYLSGCSKLKNVPETL  101 (108)
Q Consensus        76 ----~~~~l~~L~~l~l~~~~~~~~~p~~~  101 (108)
                          .++.+++|++|++++|......|..+
T Consensus       215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          215 VCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             HHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence                12444555666665544444334443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.92  E-value=8.3e-09  Score=77.04  Aligned_cols=92  Identities=24%  Similarity=0.282  Sum_probs=60.2

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +++|+.|++++ +.+..+| .+..+.+|   +     .|++++|++..++ .+..+++|+.|++++| .+..+ +.++.+
T Consensus        86 l~~L~~L~Ls~-N~l~~l~-~l~~l~~L---~-----~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l  152 (605)
T 1m9s_A           86 LKNLGWLFLDE-NKIKDLS-SLKDLKKL---K-----SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRL  152 (605)
T ss_dssp             CTTCCEEECCS-SCCCCCT-TSTTCTTC---C-----EEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSC
T ss_pred             CCCCCEEECcC-CCCCCCh-hhccCCCC---C-----EEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCc-hhhccc
Confidence            35677788877 3566655 45667777   7     7777777777653 4777777888888774 45555 456777


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      ++|++|++++|......|  +..+++|
T Consensus       153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L  177 (605)
T 1m9s_A          153 TKLDTLSLEDNQISDIVP--LAGLTKL  177 (605)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             CCCCEEECcCCcCCCchh--hccCCCC
Confidence            777888877765443333  4444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.91  E-value=5.8e-09  Score=71.36  Aligned_cols=85  Identities=18%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             CCCcEEeccCCcCCCcCCccc--CCccccccccCcceeEEEecCcccccc-C----cccccCCCCcEEeccCCcCCcccc
Q 046123            2 KSLKTLVLSGCLKLKKFPDIV--GKSSQRKLQAGISSWSFILEGTAIRGL-P----ASIELLSGSVLLNLKDCKNLKSLP   74 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~--~~~~~L~~~~~~~~~~l~l~~~~~~~~-p----~~~~~l~~L~~L~l~~~~~~~~lp   74 (108)
                      ++|++|++++|...+..|..+  ..+.+|   +     .|++++|.+... +    ..+..+++|+.|++++|......|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L---~-----~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  162 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLAL---S-----SLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC  162 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCC---S-----SCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCC---C-----EEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence            357888888854344456555  667777   7     788888877632 2    224467788888888755433344


Q ss_pred             ccccCCCCCCEEeecCCCCC
Q 046123           75 STINGLRSLRTLYLSGCSKL   94 (108)
Q Consensus        75 ~~~~~l~~L~~l~l~~~~~~   94 (108)
                      ..++.+++|++|++++|...
T Consensus       163 ~~~~~l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          163 EQVRAFPALTSLDLSDNPGL  182 (310)
T ss_dssp             TSCCCCTTCCEEECCSCTTC
T ss_pred             HHhccCCCCCEEECCCCCCc
Confidence            56777778888888876543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.91  E-value=7.6e-09  Score=74.35  Aligned_cols=28  Identities=18%  Similarity=0.281  Sum_probs=11.5

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccC
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKD   66 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~   66 (108)
                      .|++++|.+..+++ +..+++|+.|++++
T Consensus       269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          269 ELKLGANQISNISP-LAGLTALTNLELNE  296 (466)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             EEECCCCccCcccc-ccCCCccCeEEcCC
Confidence            44444444443332 33444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.90  E-value=1.1e-08  Score=73.76  Aligned_cols=76  Identities=13%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +++|++|++++ +.++.+|  ++.+.+|   +     +|++++|.+..++  ++.+++|+.|++++| .+..+|  ++.+
T Consensus        63 l~~L~~L~Ls~-n~l~~~~--~~~l~~L---~-----~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l  126 (457)
T 3bz5_A           63 LTGLTKLICTS-NNITTLD--LSQNTNL---T-----YLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQN  126 (457)
T ss_dssp             CTTCSEEECCS-SCCSCCC--CTTCTTC---S-----EEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTC
T ss_pred             cCCCCEEEccC-CcCCeEc--cccCCCC---C-----EEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec--CCCC
Confidence            35677777777 3566664  5666666   6     7777777766653  666677777777764 344443  5566


Q ss_pred             CCCCEEeecCCC
Q 046123           81 RSLRTLYLSGCS   92 (108)
Q Consensus        81 ~~L~~l~l~~~~   92 (108)
                      ++|+++++++|.
T Consensus       127 ~~L~~L~l~~N~  138 (457)
T 3bz5_A          127 PLLTYLNCARNT  138 (457)
T ss_dssp             TTCCEEECTTSC
T ss_pred             CcCCEEECCCCc
Confidence            666666666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.90  E-value=1.2e-09  Score=81.21  Aligned_cols=59  Identities=15%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             EEEecCccccccCcccccCCCC-------cEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccC
Q 046123           38 SFILEGTAIRGLPASIELLSGS-------VLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPET  100 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L-------~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~  100 (108)
                      .|++++|.++.+|. +..  +|       +.|++++ +.+..+|..++.+++|+++++++|......|..
T Consensus       184 ~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          184 ALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             EEECCSSCCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             EEECcCCCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            56666666555555 333  45       6666666 345556666656666666666665555554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.87  E-value=1.9e-09  Score=74.01  Aligned_cols=54  Identities=26%  Similarity=0.297  Sum_probs=27.2

Q ss_pred             EEEecCcc--c--cccCcccccCCCCcEEeccCCcCC-ccccccccCCCCCCEEeecCC
Q 046123           38 SFILEGTA--I--RGLPASIELLSGSVLLNLKDCKNL-KSLPSTINGLRSLRTLYLSGC   91 (108)
Q Consensus        38 ~l~l~~~~--~--~~~p~~~~~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~l~l~~~   91 (108)
                      .|++++|.  +  ..++..+..+++|+.|++++|..+ ...++.++.+++|++|++++|
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            55555552  2  233444445555555555554422 234445555556666666655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.86  E-value=1.3e-08  Score=70.82  Aligned_cols=81  Identities=14%  Similarity=0.132  Sum_probs=49.7

Q ss_pred             CCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCcccc-ccCcc-cccCCCCcEEeccCCcCCcccc-cccc
Q 046123            3 SLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIR-GLPAS-IELLSGSVLLNLKDCKNLKSLP-STIN   78 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~   78 (108)
                      ++++|++++ +.++.+|. .+..+.+|   +     +|++++|.+. .+|.. |.+++++..+...+++.+..++ ..|.
T Consensus        31 ~l~~L~Ls~-N~i~~i~~~~f~~l~~L---~-----~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~  101 (350)
T 4ay9_X           31 NAIELRFVL-TKLRVIQKGAFSGFGDL---E-----KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  101 (350)
T ss_dssp             TCSEEEEES-CCCSEECTTSSTTCTTC---C-----EEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred             CCCEEEccC-CcCCCcCHHHHcCCCCC---C-----EEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence            466777777 46666663 45666777   6     7777777654 44433 5666666554443334555553 4566


Q ss_pred             CCCCCCEEeecCCC
Q 046123           79 GLRSLRTLYLSGCS   92 (108)
Q Consensus        79 ~l~~L~~l~l~~~~   92 (108)
                      .+++|+++++++|.
T Consensus       102 ~l~~L~~L~l~~n~  115 (350)
T 4ay9_X          102 NLPNLQYLLISNTG  115 (350)
T ss_dssp             CCTTCCEEEEEEEC
T ss_pred             hccccccccccccc
Confidence            77777777777744

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.85  E-value=9.2e-09  Score=76.44  Aligned_cols=86  Identities=14%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|+.|++++ +.++.+|.   .+.+|   +     .|++++|.+..+|. +.  ++|+.|++++| .+..+|. +..  
T Consensus       140 ~~L~~L~Ls~-N~l~~lp~---~l~~L---~-----~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--  200 (571)
T 3cvr_A          140 ALLEYINADN-NQLTMLPE---LPTSL---E-----VLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--  200 (571)
T ss_dssp             TTCCEEECCS-SCCSCCCC---CCTTC---C-----EEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC---
T ss_pred             ccccEEeCCC-CccCcCCC---cCCCc---C-----EEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--
Confidence            3455566655 34555554   24455   5     67777777666666 44  67777777773 4556666 543  


Q ss_pred             CC-------CEEeecCCCCCcccccCcCCCCCC
Q 046123           82 SL-------RTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        82 ~L-------~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +|       ++|++++| .+..+|..+..+++|
T Consensus       201 ~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L  232 (571)
T 3cvr_A          201 RNHHSEETEIFFRCREN-RITHIPENILSLDPT  232 (571)
T ss_dssp             -------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred             hhhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence            56       77777774 445677665556554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.82  E-value=5.1e-09  Score=78.47  Aligned_cols=57  Identities=26%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccc
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVP   98 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p   98 (108)
                      .|++++|.++.+|.   .+++|+.|++++| .+..+|+.++.+++|+++++++|...+..|
T Consensus       245 ~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          245 ELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             EEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             EEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence            55555555555544   3455566666553 344556556666666666666655444333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.81  E-value=1.7e-08  Score=70.27  Aligned_cols=93  Identities=12%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRS   82 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~   82 (108)
                      ++++-++ +.++++|..+.  .++   +     .|++++|+++.+|+. |.++++|+.|++++|...+.+|+ +|.++++
T Consensus        12 ~~v~C~~-~~Lt~iP~~l~--~~l---~-----~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X           12 RVFLCQE-SKVTEIPSDLP--RNA---I-----ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             TEEEEES-TTCCSCCTTCC--TTC---S-----EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             CEEEecC-CCCCccCcCcC--CCC---C-----EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            4555566 56888886552  467   7     888999999888865 88899999999998665566665 5678888


Q ss_pred             CCEEeecCCCCCccc-ccCcCCCCCCC
Q 046123           83 LRTLYLSGCSKLKNV-PETLGKVESLE  108 (108)
Q Consensus        83 L~~l~l~~~~~~~~~-p~~~~~l~~L~  108 (108)
                      +..+...+++.+..+ |+.|+.+++|+
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             hhhhhcccCCcccccCchhhhhccccc
Confidence            765444443445555 56677777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.80  E-value=2e-09  Score=73.91  Aligned_cols=54  Identities=28%  Similarity=0.423  Sum_probs=24.4

Q ss_pred             EEEecCcccc-ccCcccccCCCCcEEeccCCcCCcc--ccccccCCCCCCEEeecCC
Q 046123           38 SFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKS--LPSTINGLRSLRTLYLSGC   91 (108)
Q Consensus        38 ~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~l~l~~~   91 (108)
                      .|++++|.+. ..+..+..+++|+.|++++|..+..  ++..+..+++|++|++++|
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            4555444444 3333344445555555554433331  3333444455555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.79  E-value=3e-08  Score=71.51  Aligned_cols=73  Identities=22%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      +|++|++++ +.++.+| .++.+.+|   +     ++++++|++..+|..+   .+|+.|++++| .+..+| +++++++
T Consensus       132 ~L~~L~L~~-n~l~~lp-~~~~l~~L---~-----~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~  196 (454)
T 1jl5_A          132 LLEYLGVSN-NQLEKLP-ELQNSSFL---K-----IIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPF  196 (454)
T ss_dssp             TCCEEECCS-SCCSSCC-CCTTCTTC---C-----EEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTT
T ss_pred             CCCEEECcC-CCCCCCc-ccCCCCCC---C-----EEECCCCcCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCC
Confidence            344444444 2333444 24444444   4     4444444444433221   23444444442 233333 2444444


Q ss_pred             CCEEeecC
Q 046123           83 LRTLYLSG   90 (108)
Q Consensus        83 L~~l~l~~   90 (108)
                      |+++++++
T Consensus       197 L~~L~l~~  204 (454)
T 1jl5_A          197 LTAIYADN  204 (454)
T ss_dssp             CCEEECCS
T ss_pred             CCEEECCC
Confidence            44444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.78  E-value=1.1e-08  Score=73.80  Aligned_cols=86  Identities=20%  Similarity=0.321  Sum_probs=35.0

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCc--cccccccCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLK--SLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l   80 (108)
                      +|++|++++ +.++.+|..   +.+|   +     .+++++|.++.+|.   .+++|+.|++++|...+  .+|.+++.+
T Consensus       318 ~L~~L~Ls~-N~l~~lp~~---~~~L---~-----~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          318 SLEELNVSN-NKLIELPAL---PPRL---E-----RLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             TCCEEECCS-SCCSCCCCC---CTTC---C-----EEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             cCCEEECCC-Ccccccccc---CCcC---C-----EEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence            455555555 334444432   2445   5     66666666666655   35667777777654433  455566555


Q ss_pred             -------------CCCCEEeecCCCCCc--ccccCcCC
Q 046123           81 -------------RSLRTLYLSGCSKLK--NVPETLGK  103 (108)
Q Consensus        81 -------------~~L~~l~l~~~~~~~--~~p~~~~~  103 (108)
                                   ++|+++++++|...+  .+|..++.
T Consensus       383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~  420 (454)
T 1jl5_A          383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED  420 (454)
T ss_dssp             ECCC----------------------------------
T ss_pred             hhcccccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence                         567777777655444  55554443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=5.4e-08  Score=67.09  Aligned_cols=94  Identities=14%  Similarity=0.178  Sum_probs=76.9

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCc-EEeccCCcCCcccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSV-LLNLKDCKNLKSLP-STI   77 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~-~L~l~~~~~~~~lp-~~~   77 (108)
                      ++|+.+++++ +.++.+| ..+..+.+|   +     .+++..| +..+++. |.++.+|+ .+++.+  .+..++ .+|
T Consensus       226 ~~L~~l~L~~-n~i~~I~~~aF~~~~~L---~-----~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF  293 (329)
T 3sb4_A          226 PNLVSLDISK-TNATTIPDFTFAQKKYL---L-----KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF  293 (329)
T ss_dssp             TTCCEEECTT-BCCCEECTTTTTTCTTC---C-----EEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT
T ss_pred             CCCeEEECCC-CCcceecHhhhhCCCCC---C-----EEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhh
Confidence            5799999998 5688887 567889999   9     9999887 8778765 99999999 999987  466665 589


Q ss_pred             cCCCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVP-ETLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~  108 (108)
                      .++.+|+.++++.|+ +..++ ..|.++++|+
T Consensus       294 ~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          294 MGCDNLRYVLATGDK-ITTLGDELFGNGVPSK  324 (329)
T ss_dssp             TTCTTEEEEEECSSC-CCEECTTTTCTTCCCC
T ss_pred             hCCccCCEEEeCCCc-cCccchhhhcCCcchh
Confidence            999999999998854 45554 5788888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.75  E-value=5.9e-08  Score=72.74  Aligned_cols=63  Identities=29%  Similarity=0.315  Sum_probs=45.5

Q ss_pred             EEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           38 SFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .|++++|.++.+|   ..+++|+.|++++| .+..+|.   .+++|++|++++|. +..+|..+.++++|+
T Consensus       225 ~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~  287 (622)
T 3g06_A          225 ELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSET  287 (622)
T ss_dssp             EEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTC
T ss_pred             EEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccC
Confidence            7777777777666   34577888888884 5667776   46778899998864 457888787777664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.70  E-value=4.3e-09  Score=73.87  Aligned_cols=17  Identities=18%  Similarity=0.190  Sum_probs=7.3

Q ss_pred             CcccccCCCCcEEeccC
Q 046123           50 PASIELLSGSVLLNLKD   66 (108)
Q Consensus        50 p~~~~~l~~L~~L~l~~   66 (108)
                      |..+..+++|+.|++++
T Consensus       237 ~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          237 AIALKSWPNLRELGLND  253 (386)
T ss_dssp             HHHGGGCTTCCEEECTT
T ss_pred             HHHHccCCCcCEEECCC
Confidence            33344444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.58  E-value=1.9e-08  Score=70.59  Aligned_cols=86  Identities=16%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             CCCcEEeccCCcCCC--cCC---cccCCccccccccCcceeEEEecCcccc------ccCcccccCCCCcEEeccCCcCC
Q 046123            2 KSLKTLVLSGCLKLK--KFP---DIVGKSSQRKLQAGISSWSFILEGTAIR------GLPASIELLSGSVLLNLKDCKNL   70 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~--~~p---~~~~~~~~L~~~~~~~~~~l~l~~~~~~------~~p~~~~~l~~L~~L~l~~~~~~   70 (108)
                      ++|++|++++| .++  .++   ..+..+.+|   +     .|++++|++.      .++..+..+++|+.|++++|...
T Consensus       159 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L---~-----~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          159 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLL---H-----TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTC---C-----EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             CCCcEEECCCC-CCCcHHHHHHHHHHHhCCCc---C-----EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence            57888888884 443  233   344456677   7     8899888877      23336788889999999886532


Q ss_pred             ----ccccccccCCCCCCEEeecCCCCCcc
Q 046123           71 ----KSLPSTINGLRSLRTLYLSGCSKLKN   96 (108)
Q Consensus        71 ----~~lp~~~~~l~~L~~l~l~~~~~~~~   96 (108)
                          ..+|..+..+++|++|++++|.....
T Consensus       230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          230 HLGSSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             cHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence                55777788888888888888765443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.29  E-value=1.4e-07  Score=65.85  Aligned_cols=56  Identities=18%  Similarity=0.184  Sum_probs=27.7

Q ss_pred             CCcEEeccCCcCCCcCC-----cccCCcc-ccccccCcceeEEEecCcccccc-CcccccC-----CCCcEEeccCC
Q 046123            3 SLKTLVLSGCLKLKKFP-----DIVGKSS-QRKLQAGISSWSFILEGTAIRGL-PASIELL-----SGSVLLNLKDC   67 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-----~~~~~~~-~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l-----~~L~~L~l~~~   67 (108)
                      +|++|++++| .++..+     ..+..++ +|   +     .|++++|.+... +..+..+     ++|+.|++++|
T Consensus        23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L---~-----~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           23 GVTSLDLSLN-NLYSISTVELIQAFANTPASV---T-----SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTC---C-----EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred             CceEEEccCC-CCChHHHHHHHHHHHhCCCce---e-----EEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence            3666666663 344443     2333344 45   5     566666655533 2223332     55555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.25  E-value=1.7e-07  Score=66.68  Aligned_cols=83  Identities=22%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             CCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCcccccc-Cccccc-----CCCCcEEeccCCcCCc
Q 046123            3 SLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIEL-----LSGSVLLNLKDCKNLK   71 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~-----l~~L~~L~l~~~~~~~   71 (108)
                      +|++|++++|. ++.     ++..+..+++|   +     .+++++|.+... +..+..     .++|+.|++++|....
T Consensus       314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L---~-----~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFL---L-----ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHHHHCSSC---C-----EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             cceeeEcCCCC-CchHHHHHHHHHHhhCCCc---c-----EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            45556665532 322     23333344566   6     777777766532 222221     4577777777754322


Q ss_pred             ----cccccccCCCCCCEEeecCCCCC
Q 046123           72 ----SLPSTINGLRSLRTLYLSGCSKL   94 (108)
Q Consensus        72 ----~lp~~~~~l~~L~~l~l~~~~~~   94 (108)
                          .+|.++..+++|+++++++|...
T Consensus       385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          385 SSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence                56666667777777887776543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=1.8e-06  Score=58.75  Aligned_cols=58  Identities=24%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             EEEecCccccccC---cccccCCCCcEEeccCCcCCccccccccCCC--CCCEEeecCCCCCccc
Q 046123           38 SFILEGTAIRGLP---ASIELLSGSVLLNLKDCKNLKSLPSTINGLR--SLRTLYLSGCSKLKNV   97 (108)
Q Consensus        38 ~l~l~~~~~~~~p---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~l~l~~~~~~~~~   97 (108)
                      .|++++|++..++   ..+..+++|+.|++++| .+..+. .+..+.  +|++|++++|.....+
T Consensus       174 ~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             EEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence            6666666665432   33455666666666663 344332 122222  5666666665554433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.21  E-value=1.3e-07  Score=67.20  Aligned_cols=9  Identities=33%  Similarity=0.479  Sum_probs=4.5

Q ss_pred             CCcEEeccC
Q 046123            3 SLKTLVLSG   11 (108)
Q Consensus         3 ~L~~L~l~~   11 (108)
                      +|++|++++
T Consensus       200 ~L~~L~L~~  208 (461)
T 1z7x_W          200 QLEALKLES  208 (461)
T ss_dssp             CCCEEECTT
T ss_pred             CceEEEccC
Confidence            445555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=1e-06  Score=56.56  Aligned_cols=85  Identities=14%  Similarity=0.207  Sum_probs=59.2

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCcc-ccc-cCcccccC----CCCcEEeccCCcCCccc-c
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTA-IRG-LPASIELL----SGSVLLNLKDCKNLKSL-P   74 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~-~~~-~p~~~~~l----~~L~~L~l~~~~~~~~l-p   74 (108)
                      .|+.||+++|. +++.. ..+..+.+|   +     .|++++|. ++. --..+..+    ++|+.|++++|..+.+- -
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L---~-----~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYV---E-----KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCC---C-----EEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCC---C-----EEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            47889999975 65543 455678888   8     99998884 652 22334443    46999999998877652 1


Q ss_pred             ccccCCCCCCEEeecCCCCCcc
Q 046123           75 STINGLRSLRTLYLSGCSKLKN   96 (108)
Q Consensus        75 ~~~~~l~~L~~l~l~~~~~~~~   96 (108)
                      ..+..+++|++|++++|..++.
T Consensus       133 ~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHhcCCCCCEEECCCCCCCCc
Confidence            3466788999999999876543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.14  E-value=1.3e-05  Score=55.07  Aligned_cols=66  Identities=18%  Similarity=0.184  Sum_probs=42.3

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCC-EEeecCCCCCccc-ccCcCCCCCC
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLR-TLYLSGCSKLKNV-PETLGKVESL  107 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~-~l~l~~~~~~~~~-p~~~~~l~~L  107 (108)
                      .+++++|++..+++. |.++.+|+.+++.++  +..+++ +|.++.+|+ .+++.+ + +..+ +..|.++.+|
T Consensus       230 ~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          230 SLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNL  299 (329)
T ss_dssp             EEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTE
T ss_pred             EEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccC
Confidence            777777777766655 777777777777763  555554 567777777 777766 3 3333 3456666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.11  E-value=5.9e-07  Score=62.61  Aligned_cols=84  Identities=12%  Similarity=0.005  Sum_probs=58.6

Q ss_pred             EeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccC-----cccccCC-CCcEEeccCCcCCccccccccCC
Q 046123            7 LVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLP-----ASIELLS-GSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         7 L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p-----~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +.+++++..+.+|..+....++   +     .|++++|.+...+     ..+..++ +|+.|++++|......+..+..+
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L---~-----~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~   74 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGV---T-----SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI   74 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTC---C-----EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             cccccccchHHHHHHHhCCCCc---e-----EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH
Confidence            5677743333445555555668   8     9999999998766     4577888 89999999965433345555554


Q ss_pred             -----CCCCEEeecCCCCCcccc
Q 046123           81 -----RSLRTLYLSGCSKLKNVP   98 (108)
Q Consensus        81 -----~~L~~l~l~~~~~~~~~p   98 (108)
                           ++|++|++++|......+
T Consensus        75 l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           75 LAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhccCCCccEEECcCCcCChHHH
Confidence                 789999999976544433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.03  E-value=4.2e-06  Score=61.16  Aligned_cols=20  Identities=20%  Similarity=0.097  Sum_probs=11.4

Q ss_pred             ccccccCCCCCCEEeecCCC
Q 046123           73 LPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        73 lp~~~~~l~~L~~l~l~~~~   92 (108)
                      +|..+..+++|++|++++|.
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCC
T ss_pred             HHHHHhhcCCCcEEecCCCc
Confidence            34444455566666666655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.01  E-value=2.6e-06  Score=62.30  Aligned_cols=51  Identities=12%  Similarity=0.046  Sum_probs=24.7

Q ss_pred             EEEecCcccc-----ccCcccccCCCCcEEeccCCcCCccccccccCCCCCCEEeec
Q 046123           38 SFILEGTAIR-----GLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLS   89 (108)
Q Consensus        38 ~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~   89 (108)
                      .|++++|.+.     .++..+..+++|+.|++++|. +..+|..+..+++|++++++
T Consensus       196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEEC
T ss_pred             EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccc
Confidence            5555555543     222224455666666666532 33344444444445555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.01  E-value=4.5e-07  Score=66.31  Aligned_cols=12  Identities=25%  Similarity=0.362  Sum_probs=6.0

Q ss_pred             CCCCCEEeecCC
Q 046123           80 LRSLRTLYLSGC   91 (108)
Q Consensus        80 l~~L~~l~l~~~   91 (108)
                      +++|++|++++|
T Consensus       210 ~~~L~~L~L~~~  221 (594)
T 2p1m_B          210 CPNLKSLKLNRA  221 (594)
T ss_dssp             CTTCCEEECCTT
T ss_pred             CCCCcEEecCCC
Confidence            344555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.88  E-value=1.2e-05  Score=54.65  Aligned_cols=77  Identities=18%  Similarity=0.190  Sum_probs=57.8

Q ss_pred             CCCCcEEeccCCcCCCcC---CcccCCccccccccCcceeEEEecCccccccCcccccCC--CCcEEeccCCcCCccccc
Q 046123            1 MKSLKTLVLSGCLKLKKF---PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLS--GSVLLNLKDCKNLKSLPS   75 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~---p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~--~L~~L~l~~~~~~~~lp~   75 (108)
                      +++|++|++++ |.+..+   |..+..+++|   +     .|++++|.++.+ ..+..+.  +|+.|++.+|+....+|.
T Consensus       169 l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L---~-----~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          169 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNL---K-----ILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             CTTCCEEECTT-SCCCCCGGGTTHHHHSTTC---C-----EEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             CCCCCEEECCC-CCCCCCccchhHHhhCCCC---C-----EEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCc
Confidence            46899999999 566654   4555678899   9     999999999976 3345554  999999999775555552


Q ss_pred             -------cccCCCCCCEEe
Q 046123           76 -------TINGLRSLRTLY   87 (108)
Q Consensus        76 -------~~~~l~~L~~l~   87 (108)
                             .+..+++|+.||
T Consensus       239 ~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEES
T ss_pred             chhHHHHHHHHCcccCeEC
Confidence                   356678888886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.85  E-value=4.4e-06  Score=61.06  Aligned_cols=55  Identities=18%  Similarity=0.259  Sum_probs=27.5

Q ss_pred             EEEecCcccc-ccCcccc-cCCCCcEEeccCCcCCcc--ccccccCCCCCCEEeecCCC
Q 046123           38 SFILEGTAIR-GLPASIE-LLSGSVLLNLKDCKNLKS--LPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        38 ~l~l~~~~~~-~~p~~~~-~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~l~l~~~~   92 (108)
                      .|+++++.+. ..+..+. .+++|+.|++.+|..+..  ++..+.++++|++|++++|.
T Consensus       109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            6666666554 2223332 455666666665543333  33333345556666665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.76  E-value=7.6e-06  Score=57.69  Aligned_cols=56  Identities=20%  Similarity=0.036  Sum_probs=27.1

Q ss_pred             EEEecCccccc-----cCcccccCCCCcEEeccCCcCCc----cccccccCCCCCCEEeecCCCC
Q 046123           38 SFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK----SLPSTINGLRSLRTLYLSGCSK   93 (108)
Q Consensus        38 ~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~~   93 (108)
                      +|++++|.+..     ++..+...++|+.|++++|....    .+..++...++|++|++++|..
T Consensus       187 ~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             EEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             EEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            66666665542     12334445556666666543211    1223333445566666666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.69  E-value=3.4e-06  Score=59.50  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             EEEecCccccc-----cCcccccCCCCcEEeccCCcCCcc-----ccccccCCCCCCEEeecCCCCC
Q 046123           38 SFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLKS-----LPSTINGLRSLRTLYLSGCSKL   94 (108)
Q Consensus        38 ~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~l~l~~~~~~   94 (108)
                      .|++++|.+..     ++..+..+++|+.|++++|. +..     +..++...++|++|++++|...
T Consensus       159 ~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             EEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             eeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            66666666542     23334556667777777643 332     2444555566777777776543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.46  E-value=9.9e-05  Score=47.24  Aligned_cols=72  Identities=14%  Similarity=0.140  Sum_probs=48.9

Q ss_pred             eeEEEecCccccc-cCcccccCCCCcEEeccCCcCCccc-cccccCC----CCCCEEeecCCCCCcc-cccCcCCCCCC
Q 046123           36 SWSFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSL-PSTINGL----RSLRTLYLSGCSKLKN-VPETLGKVESL  107 (108)
Q Consensus        36 ~~~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l----~~L~~l~l~~~~~~~~-~p~~~~~l~~L  107 (108)
                      |+.+|++++.++. --..+.++++|+.|++++|..+.+- -..+..+    ++|++|++++|..++. --..+.++++|
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            4499999998773 2345789999999999999876642 1234443    3799999999975543 22233444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.45  E-value=5.6e-05  Score=48.18  Aligned_cols=83  Identities=14%  Similarity=0.181  Sum_probs=49.5

Q ss_pred             CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCcCCc
Q 046123            2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK   71 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~   71 (108)
                      ++|++|++++|..+..     +...+....++   +     +|++++|.+..     +...+...+.|+.|++++|. ++
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L---~-----~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~  106 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYV---K-----KFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS  106 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSC---C-----EEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCc---C-----EEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence            4677888887524433     23334445566   6     78888777652     23334555677888887754 33


Q ss_pred             c-----ccccccCCCCCCEEee--cCCCC
Q 046123           72 S-----LPSTINGLRSLRTLYL--SGCSK   93 (108)
Q Consensus        72 ~-----lp~~~~~l~~L~~l~l--~~~~~   93 (108)
                      .     +..++...++|++|++  ++|..
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence            2     3445666667777777  55543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.44  E-value=0.00093  Score=47.48  Aligned_cols=36  Identities=14%  Similarity=0.235  Sum_probs=17.7

Q ss_pred             cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCC
Q 046123           53 IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGC   91 (108)
Q Consensus        53 ~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~   91 (108)
                      |.++.+|+.+.+..  .+..+. .+|.++ +|+.+++.+|
T Consensus       319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred             hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence            44555555555543  133332 245555 5666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.41  E-value=0.0011  Score=47.16  Aligned_cols=15  Identities=13%  Similarity=0.016  Sum_probs=8.6

Q ss_pred             cccCCCCCCEEeecC
Q 046123           76 TINGLRSLRTLYLSG   90 (108)
Q Consensus        76 ~~~~l~~L~~l~l~~   90 (108)
                      +|.++.+|+.+++.+
T Consensus       266 aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          266 AFYYCPELAEVTTYG  280 (401)
T ss_dssp             TTTTCTTCCEEEEES
T ss_pred             HhhCCCCCCEEEeCC
Confidence            455555666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.37  E-value=0.00014  Score=46.24  Aligned_cols=81  Identities=12%  Similarity=0.194  Sum_probs=54.7

Q ss_pred             CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEec--cCCcC
Q 046123            2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNL--KDCKN   69 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l--~~~~~   69 (108)
                      ++|++|++++| .+.+     +...+.....|   +     .|++++|.+..     +...+...+.|+.|++  ++|. 
T Consensus        65 ~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L---~-----~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-  134 (185)
T 1io0_A           65 TYVKKFSIVGT-RSNDPVAFALAEMLKVNNTL---K-----SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-  134 (185)
T ss_dssp             CSCCEEECTTS-CCCHHHHHHHHHHHHHCSSC---C-----EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-
T ss_pred             CCcCEEECcCC-CCChHHHHHHHHHHHhCCCc---C-----EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-
Confidence            46888999985 4543     22333344567   7     89999998763     4455677788999999  6644 


Q ss_pred             Ccc-----ccccccCCCCCCEEeecCCC
Q 046123           70 LKS-----LPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        70 ~~~-----lp~~~~~l~~L~~l~l~~~~   92 (108)
                      ++.     +...+...++|+++++++|.
T Consensus       135 i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          135 LGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            432     34455556789999998864

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.19  E-value=0.0011  Score=40.08  Aligned_cols=53  Identities=15%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             EEeccCCcCCC--cCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcC
Q 046123            6 TLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKN   69 (108)
Q Consensus         6 ~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~   69 (108)
                      .++-++ +.++  .+|..+.  .++   +     .|++++|+++.+|.. |..+++|+.+++.+|+.
T Consensus        12 ~v~Cs~-~~L~~~~vP~~lp--~~l---~-----~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAFP--VDT---T-----ELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCCC--TTC---S-----EEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCC-CCCccccCCCCCC--cCC---C-----EEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            566666 5677  7885433  356   7     899999999988776 78889999999998653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.99  E-value=0.0073  Score=41.90  Aligned_cols=50  Identities=16%  Similarity=0.232  Sum_probs=22.4

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeec
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLS   89 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~   89 (108)
                      .+.+.++.+..+++. |.++.+|+.+.+..  .+..+.+ +|.++.+|+.+.+.
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence            444444444444332 44555555555543  1333332 44445555554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.95  E-value=0.0052  Score=42.63  Aligned_cols=93  Identities=11%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-ccc
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TIN   78 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~   78 (108)
                      ..|+.+.+..  .++.++ ..+..+..+   +     .+.+..+ +..++.. |.++.+|+.+.+.+ ..+..+++ +|.
T Consensus       240 ~~L~~i~lp~--~v~~I~~~aF~~~~~l---~-----~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~  307 (379)
T 4h09_A          240 KALDEIAIPK--NVTSIGSFLLQNCTAL---K-----TLNFYAK-VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFM  307 (379)
T ss_dssp             SSCCEEEECT--TCCEECTTTTTTCTTC---C-----EEEECCC-CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTT
T ss_pred             ccceEEEcCC--CccEeCccccceeehh---c-----ccccccc-ceeccccccccccccccccccc-cccceehhhhhc
Confidence            3466666654  355554 455667778   7     8877543 6666554 88999999999987 45666654 788


Q ss_pred             CCCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVP-ETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~  108 (108)
                      ++.+|+.+.+.. + ++.+. ..|.++++|+
T Consensus       308 ~c~~L~~i~lp~-~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          308 DCVKLSSVTLPT-A-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TCTTCCEEECCT-T-CCEECTTTTTTCTTCC
T ss_pred             CCCCCCEEEcCc-c-ccEEHHHHhhCCCCCC
Confidence            899999999975 2 45554 4577776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.93  E-value=0.0089  Score=41.86  Aligned_cols=35  Identities=6%  Similarity=0.166  Sum_probs=15.9

Q ss_pred             cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeec
Q 046123           53 IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLS   89 (108)
Q Consensus        53 ~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~   89 (108)
                      |.++.+|+.+.+.+  .+..+. .+|.++.+|+.+.+.
T Consensus       307 F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          307 FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC
T ss_pred             ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC
Confidence            44555555555543  133332 244445555555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.91  E-value=0.0024  Score=38.54  Aligned_cols=53  Identities=25%  Similarity=0.315  Sum_probs=43.0

Q ss_pred             EEEecCcccc--ccCcccccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeecCCCC
Q 046123           38 SFILEGTAIR--GLPASIELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLSGCSK   93 (108)
Q Consensus        38 ~l~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~   93 (108)
                      .++-++++++  .+|..+.  .+++.|+|++ +.+..+|+ .|..+.+|+++++++|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            6778888888  8887544  4799999999 56888876 467889999999999754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.90  E-value=0.0026  Score=44.64  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=50.9

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCcccc-ccccC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLP-STING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~   79 (108)
                      +|+.+.+..  .++.++ .++..+.+|   +     .+++..+ +..+.. .|.++.+|+.+.+..+  +..+. .+|.+
T Consensus       298 ~L~~i~l~~--~i~~I~~~aF~~c~~L---~-----~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~  364 (394)
T 4fs7_A          298 SLTEVKLLD--SVKFIGEEAFESCTSL---V-----SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQG  364 (394)
T ss_dssp             TCCEEEECT--TCCEECTTTTTTCTTC---C-----EECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTT
T ss_pred             ccccccccc--ccceechhhhcCCCCC---C-----EEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhC
Confidence            445555543  245554 344556666   6     6666433 555543 3777777777777652  45554 36777


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +.+|+.+++..+  +..+...|.++.+|
T Consensus       365 C~~L~~i~lp~~--~~~~~~~F~~c~~L  390 (394)
T 4fs7_A          365 CINLKKVELPKR--LEQYRYDFEDTTKF  390 (394)
T ss_dssp             CTTCCEEEEEGG--GGGGGGGBCTTCEE
T ss_pred             CCCCCEEEECCC--CEEhhheecCCCCC
Confidence            777777777652  33344455555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.71  E-value=0.001  Score=46.82  Aligned_cols=13  Identities=8%  Similarity=0.186  Sum_probs=6.4

Q ss_pred             CCCCCCEEeecCC
Q 046123           79 GLRSLRTLYLSGC   91 (108)
Q Consensus        79 ~l~~L~~l~l~~~   91 (108)
                      .+++|+.|++++|
T Consensus       305 ~l~~L~~L~L~~n  317 (362)
T 2ra8_A          305 KIKHLKFINMKYN  317 (362)
T ss_dssp             HHTTCSEEECCSB
T ss_pred             cCCcceEEECCCC
Confidence            3445555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.51  E-value=0.0036  Score=43.98  Aligned_cols=11  Identities=27%  Similarity=0.422  Sum_probs=6.5

Q ss_pred             CCCcEEeccCC
Q 046123            2 KSLKTLVLSGC   12 (108)
Q Consensus         2 ~~L~~L~l~~~   12 (108)
                      ++|+.|.+++|
T Consensus       172 P~L~~L~L~g~  182 (362)
T 2ra8_A          172 PLLNNLKIKGT  182 (362)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCCcEEEEeCC
Confidence            45666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.26  E-value=0.025  Score=39.58  Aligned_cols=76  Identities=13%  Similarity=0.235  Sum_probs=54.5

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STING   79 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~   79 (108)
                      .|+.+.+.  +.++.++ ..+..+.+|   +     .+++..+ ++.+... |.++.+|+.+.+..  .+..+. .+|.+
T Consensus       289 ~L~~i~l~--~~i~~I~~~aF~~c~~L---~-----~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~  355 (394)
T 4gt6_A          289 ALQDIEFS--SRITELPESVFAGCISL---K-----SIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSN  355 (394)
T ss_dssp             TCCEEECC--TTCCEECTTTTTTCTTC---C-----EEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTT
T ss_pred             ccccccCC--CcccccCceeecCCCCc---C-----EEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhC
Confidence            45555553  2455665 455667788   8     8888654 6666544 89999999999976  266665 47899


Q ss_pred             CCCCCEEeecCC
Q 046123           80 LRSLRTLYLSGC   91 (108)
Q Consensus        80 l~~L~~l~l~~~   91 (108)
                      +.+|+.+++.++
T Consensus       356 C~~L~~i~~~~~  367 (394)
T 4gt6_A          356 CTALNNIEYSGS  367 (394)
T ss_dssp             CTTCCEEEESSC
T ss_pred             CCCCCEEEECCc
Confidence            999999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.33  E-value=0.075  Score=37.09  Aligned_cols=66  Identities=14%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCCCCCcccc-cCcCCCCCCC
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGCSKLKNVP-ETLGKVESLE  108 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~~~~~p-~~~~~l~~L~  108 (108)
                      .+.+..+ +..+.+. |.++.+|+.+++.+  .+..+. .+|.++.+|+.+.+..+  +..+. ..|.++.+|+
T Consensus       301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLK  369 (394)
T ss_dssp             EEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCC
T ss_pred             ccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCC
Confidence            6666543 5556544 88889999999875  366665 47888999999999763  45554 5688877764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.14  E-value=0.041  Score=35.60  Aligned_cols=81  Identities=21%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCcCCc
Q 046123            2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK   71 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~   71 (108)
                      ++|+.|++++++.+.+     +-+.+..-..|   +     .|++++|++..     +.+.+..-+.|+.|++++|. ++
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L---~-----~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig  111 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHI---E-----KFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT  111 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC---C-----EEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCc---C-----EEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CC
Confidence            3578888877434443     22333334556   6     88888887752     23334566788888888854 33


Q ss_pred             c-----ccccccCCCCCCEEeecCC
Q 046123           72 S-----LPSTINGLRSLRTLYLSGC   91 (108)
Q Consensus        72 ~-----lp~~~~~l~~L~~l~l~~~   91 (108)
                      .     +-+++..-..|++|++++|
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCC
Confidence            2     2334444456888888753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.48  E-value=0.27  Score=31.70  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=52.4

Q ss_pred             CCCcEEeccCCcCCCcCC-----cccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCc--C
Q 046123            2 KSLKTLVLSGCLKLKKFP-----DIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCK--N   69 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-----~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~--~   69 (108)
                      ++|+.|++++| .+++..     ..+..-..|   +     .|++++|.|..     +.+.+..-+.|+.|++++|.  .
T Consensus        70 ~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL---~-----~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~  140 (197)
T 1pgv_A           70 KHIEKFSLANT-AISDSEARGLIELIETSPSL---R-----VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  140 (197)
T ss_dssp             SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSC---C-----EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             CCcCEEEccCC-CCChHHHHHHHHHHhcCCcc---C-----eEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcC
Confidence            46899999995 555431     222233556   7     99999998862     33445666789999998642  2


Q ss_pred             Cc-----cccccccCCCCCCEEeecCC
Q 046123           70 LK-----SLPSTINGLRSLRTLYLSGC   91 (108)
Q Consensus        70 ~~-----~lp~~~~~l~~L~~l~l~~~   91 (108)
                      ++     .+-+.+..=++|+.++++.+
T Consensus       141 ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          141 LGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            33     13334444567899998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 6e-05
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 41  LEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPET 100
           +    +  LPA    L     L      +L  +P      ++L+ L++     L+  P+ 
Sbjct: 291 VSNNKLIELPALPPRLE---RLIASFN-HLAEVPEL---PQNLKQLHVEYN-PLREFPDI 342

Query: 101 LGKVESL 107
              VE L
Sbjct: 343 PESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 32.9 bits (73), Expect = 0.004
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 16/84 (19%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSV 60
             SL+ L +S   KL + P +  +     L+        I     +  +P   + L    
Sbjct: 283 PPSLEELNVSNN-KLIELPALPPR-----LE------RLIASFNHLAEVPELPQNLK--- 327

Query: 61  LLNLKDCKNLKSLPSTINGLRSLR 84
            L+++    L+  P     +  LR
Sbjct: 328 QLHVEYNP-LREFPDIPESVEDLR 350

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 33.6 bits (75), Expect = 0.002
 Identities = 9/46 (19%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 63  NLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE 108
           +L++ +   +LP  +  L+ L +L +S  +    +P+  G ++  +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFD 294

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.29
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.22
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.2
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.18
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.13
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.13
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.08
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.89
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.87
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.86
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.86
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.8
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.51
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.11
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.03
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.65
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.58
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.23

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.8e-13  Score=80.00  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=39.3

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccc--ccccCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLP--STINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l   80 (108)
                      +|++|++++ +.++.+|+.++.+.+|   +     .+++++|.++.+| .+..+++|+.+++++ +.+..+|  ..++.+
T Consensus        21 ~L~~L~ls~-N~l~~lp~~~~~l~~L---~-----~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~   89 (124)
T d1dcea3          21 LVTHLDLSH-NRLRALPPALAALRCL---E-----VLQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSC   89 (124)
T ss_dssp             TCCEEECCS-SCCCCCCGGGGGCTTC---C-----EEECCSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGC
T ss_pred             CCCEEECCC-CccCcchhhhhhhhcc---c-----ccccccccccccC-ccccccccCeEECCC-CccCCCCCchhhcCC
Confidence            455555555 3455555445555555   5     5555555555443 255555555555555 3344333  234455


Q ss_pred             CCCCEEeecCC
Q 046123           81 RSLRTLYLSGC   91 (108)
Q Consensus        81 ~~L~~l~l~~~   91 (108)
                      ++|+++++++|
T Consensus        90 ~~L~~L~l~~N  100 (124)
T d1dcea3          90 PRLVLLNLQGN  100 (124)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEECCCC
Confidence            55555555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=3e-12  Score=81.16  Aligned_cols=97  Identities=21%  Similarity=0.280  Sum_probs=72.8

Q ss_pred             CCCcEEeccCCcCCCc-CC-cccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccc-cc
Q 046123            2 KSLKTLVLSGCLKLKK-FP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPS-TI   77 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~-~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~-~~   77 (108)
                      +++++|++++ +.++. ++ ..+..+.+|   +     .|++++|.+..+++ .+..+++|+.|++++| .+..+|+ +|
T Consensus        29 ~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L---~-----~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F   98 (192)
T d1w8aa_          29 LHTTELLLND-NELGRISSDGLFGRLPHL---V-----KLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMF   98 (192)
T ss_dssp             TTCSEEECCS-CCCCSBCCSCSGGGCTTC---C-----EEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSS
T ss_pred             CCCCEEEeCC-CCCcccccccccCCCceE---e-----eeeccccccccccccccccccccceeeeccc-cccccCHHHH
Confidence            3678899999 45654 43 556778888   8     99999999886654 4888899999999984 5666654 68


Q ss_pred             cCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .++++|++|++++|......|+.|..+++|+
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             hCCCcccccccCCccccccCHHHhcCCcccc
Confidence            8899999999999655444456677777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=3.2e-12  Score=76.29  Aligned_cols=90  Identities=20%  Similarity=0.281  Sum_probs=74.7

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRSLR   84 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~   84 (108)
                      ++|++++ +.++.++. +..+.++   +     +|++++|+++++|+.+..+++|+.|++++ +.+..+|+ ++.+++|+
T Consensus         1 R~L~Ls~-n~l~~l~~-l~~l~~L---~-----~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~-~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAH-KDLTVLCH-LEQLLLV---T-----HLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG-VANLPRLQ   68 (124)
T ss_dssp             SEEECTT-SCCSSCCC-GGGGTTC---C-----EEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCC
T ss_pred             CEEEcCC-CCCCCCcc-cccCCCC---C-----EEECCCCccCcchhhhhhhhccccccccc-ccccccCc-cccccccC
Confidence            5799999 67888874 6888899   9     99999999999998899999999999999 56888864 89999999


Q ss_pred             EEeecCCCCCcccc--cCcCCCCCC
Q 046123           85 TLYLSGCSKLKNVP--ETLGKVESL  107 (108)
Q Consensus        85 ~l~l~~~~~~~~~p--~~~~~l~~L  107 (108)
                      ++++++| .+..+|  ..+..+++|
T Consensus        69 ~L~l~~N-~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          69 ELLLCNN-RLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             EEECCSS-CCCSSSTTGGGGGCTTC
T ss_pred             eEECCCC-ccCCCCCchhhcCCCCC
Confidence            9999995 455554  345666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.9e-12  Score=78.26  Aligned_cols=93  Identities=22%  Similarity=0.243  Sum_probs=62.1

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccccc-ccCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPST-INGLR   81 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~   81 (108)
                      +++.|++++ +.++.++.....+.+|   +     .+++++|++++++ .+..+++|+.|++++| .+..+|++ +..++
T Consensus        19 ~lr~L~L~~-n~I~~i~~~~~~l~~L---~-----~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~   87 (162)
T d1a9na_          19 RDRELDLRG-YKIPVIENLGATLDQF---D-----AIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALP   87 (162)
T ss_dssp             SCEEEECTT-SCCCSCCCGGGGTTCC---S-----EEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred             cCcEEECCC-CCCCccCccccccccC---C-----EEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCcccccccc
Confidence            567788888 5677777655667777   7     8888888877764 4777778888888874 46666554 34577


Q ss_pred             CCCEEeecCCCCCccccc--CcCCCCCC
Q 046123           82 SLRTLYLSGCSKLKNVPE--TLGKVESL  107 (108)
Q Consensus        82 ~L~~l~l~~~~~~~~~p~--~~~~l~~L  107 (108)
                      +|+++++++|. +..+++  .+..+++|
T Consensus        88 ~L~~L~L~~N~-i~~~~~l~~l~~l~~L  114 (162)
T d1a9na_          88 DLTELILTNNS-LVELGDLDPLASLKSL  114 (162)
T ss_dssp             TCCEEECCSCC-CCCGGGGGGGGGCTTC
T ss_pred             ccccceecccc-cccccccccccccccc
Confidence            77888887754 333432  34455544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.28  E-value=3.8e-12  Score=85.58  Aligned_cols=96  Identities=20%  Similarity=0.307  Sum_probs=47.2

Q ss_pred             CCCcEEeccCCcC-CCcCCcccCCccccccccCcceeEEEecCcccccc-CcccccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLK-LKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGL-PASIELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~-~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++|++|++++|+. .+.+|+.++.+.+|   +     +|++++|++..+ +..+..+.+|+.++++.|.....+|+.+++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L---~-----~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQL---H-----YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTC---S-----EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             cccccccccccccccccccccccccccc---c-----hhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            3445555544222 22444444445555   4     555555554432 222444455555555554444445555666


Q ss_pred             CCCCCEEeecCCCCCcccccCcCCCC
Q 046123           80 LRSLRTLYLSGCSKLKNVPETLGKVE  105 (108)
Q Consensus        80 l~~L~~l~l~~~~~~~~~p~~~~~l~  105 (108)
                      ++.++++++++|.....+|..+..+.
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~  173 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             Ccccceeecccccccccccccccccc
Confidence            66666666666555555555544443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=4.5e-11  Score=75.58  Aligned_cols=84  Identities=21%  Similarity=0.234  Sum_probs=70.4

Q ss_pred             CCCCcEEeccCCcCCCcC-CcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cc
Q 046123            1 MKSLKTLVLSGCLKLKKF-PDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TI   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~-p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~   77 (108)
                      +++|+.|++++| .+..+ +..+..+.+|   +     .|++++|++..+++. |.++++|+.|++++ +.++.+|+ +|
T Consensus        53 l~~L~~L~L~~N-~i~~~~~~~~~~~~~L---~-----~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f  122 (192)
T d1w8aa_          53 LPHLVKLELKRN-QLTGIEPNAFEGASHI---Q-----ELQLGENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSF  122 (192)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTC---C-----EEECCSCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSS
T ss_pred             CceEeeeecccc-cccccccccccccccc---c-----eeeeccccccccCHHHHhCCCcccccccCC-ccccccCHHHh
Confidence            468999999994 56665 4777788999   9     999999999988765 89999999999999 56777655 68


Q ss_pred             cCCCCCCEEeecCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKL   94 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~   94 (108)
                      ..+++|+++++++|...
T Consensus       123 ~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         123 EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCTTCCEEECTTCCBC
T ss_pred             cCCcccccccccccccc
Confidence            89999999999997543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.5e-11  Score=79.93  Aligned_cols=96  Identities=24%  Similarity=0.289  Sum_probs=54.3

Q ss_pred             CCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccCC
Q 046123            3 SLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +|+.+++++ +.++.+| ..+..+.++   +     .+++++|+++.+++. +.++++|+.+++++|+.....|..|.++
T Consensus       130 ~L~~l~l~~-N~l~~i~~~~f~~~~~L---~-----~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l  200 (284)
T d1ozna_         130 ALQYLYLQD-NALQALPDDTFRDLGNL---T-----HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (284)
T ss_dssp             TCCEEECCS-SCCCCCCTTTTTTCTTC---C-----EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             ccchhhhcc-ccccccChhHhccccch---h-----hcccccCcccccchhhhccccccchhhhhhccccccChhHhhhh
Confidence            455555555 3455554 334445555   5     666666666655433 5666666666666644444445566666


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      ++|+++++++|......+..|+++++|
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             hhccccccccccccccccccccccccc
Confidence            666666666655444444455555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5e-11  Score=73.51  Aligned_cols=83  Identities=19%  Similarity=0.166  Sum_probs=53.9

Q ss_pred             CCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccccccC
Q 046123            2 KSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPSTING   79 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~   79 (108)
                      ++++.|++++++.++.++ ..+..+.+|   +     .|++++|+++.+++. |..+++|+.|++++ +.+..+|.....
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L---~-----~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~  101 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGEL---R-----NLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ  101 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCC---S-----EEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred             cccCeeecCCCccccccCchhhcccccc---C-----cceeeccccCCcccccccccccccceeccC-CCCcccChhhhc
Confidence            456677776644566665 456666777   7     777777777766433 67777777777777 456666665544


Q ss_pred             CCCCCEEeecCCCC
Q 046123           80 LRSLRTLYLSGCSK   93 (108)
Q Consensus        80 l~~L~~l~l~~~~~   93 (108)
                      ..+|+++++++|..
T Consensus       102 ~~~l~~L~L~~Np~  115 (156)
T d2ifga3         102 GLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCCCEEECCSSCC
T ss_pred             cccccccccCCCcc
Confidence            44677777776543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.20  E-value=1.2e-11  Score=83.12  Aligned_cols=98  Identities=18%  Similarity=0.254  Sum_probs=81.0

Q ss_pred             CCcEEeccCCcCCC--cCCcccCCccccccccCcceeEEEecC-cccc-ccCcccccCCCCcEEeccCCcCCcccccccc
Q 046123            3 SLKTLVLSGCLKLK--KFPDIVGKSSQRKLQAGISSWSFILEG-TAIR-GLPASIELLSGSVLLNLKDCKNLKSLPSTIN   78 (108)
Q Consensus         3 ~L~~L~l~~~~~~~--~~p~~~~~~~~L~~~~~~~~~~l~l~~-~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~   78 (108)
                      .++.|++++++...  .+|+.++.+++|   +     +|++++ |.+. .+|+.++++++|++|++++|......+..+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L---~-----~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYL---N-----FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTC---S-----EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccc---c-----ccccccccccccccccccccccccchhhhcccccccccccccc
Confidence            46789999954333  478899999999   9     999986 7787 7899999999999999999655555666788


Q ss_pred             CCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           79 GLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .+.+|+++++++|.....+|..+++++.++
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             chhhhcccccccccccccCchhhccCcccc
Confidence            899999999999888888898888887664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.7e-11  Score=75.20  Aligned_cols=86  Identities=15%  Similarity=0.182  Sum_probs=70.6

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc--cc
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS--TI   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~--~~   77 (108)
                      +++|++|++++ +.++.++ .+..+++|   +     .|++++|++..+++. +..+++|+.|++++| .+..+++  .+
T Consensus        40 l~~L~~L~Ls~-N~i~~l~-~~~~l~~L---~-----~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l  108 (162)
T d1a9na_          40 LDQFDAIDFSD-NEIRKLD-GFPLLRRL---K-----TLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPL  108 (162)
T ss_dssp             TTCCSEEECCS-SCCCEEC-CCCCCSSC---C-----EEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGG
T ss_pred             cccCCEEECCC-CCCCccC-CcccCcch---h-----hhhcccccccCCCccccccccccccceeccc-ccccccccccc
Confidence            46799999999 5788885 46778899   8     999999999988876 567999999999994 5776664  67


Q ss_pred             cCCCCCCEEeecCCCCCcccc
Q 046123           78 NGLRSLRTLYLSGCSKLKNVP   98 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p   98 (108)
                      ..+++|+++++++|. +...|
T Consensus       109 ~~l~~L~~L~l~~N~-i~~~~  128 (162)
T d1a9na_         109 ASLKSLTYLCILRNP-VTNKK  128 (162)
T ss_dssp             GGCTTCCEEECCSSG-GGGST
T ss_pred             ccccccchhhcCCCc-ccccc
Confidence            889999999999964 34444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3e-10  Score=74.83  Aligned_cols=68  Identities=31%  Similarity=0.458  Sum_probs=42.5

Q ss_pred             EEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccccCCCCCCEEeecCCCCCcccccCcCCCCCC
Q 046123           38 SFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STINGLRSLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        38 ~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      .+++++|.+..+++. +..+++++.+++++| .+..+| ..|..+++|++|++++|. +..+|+.+..+++|
T Consensus       128 ~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L  197 (266)
T d1p9ag_         128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLL  197 (266)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCC
T ss_pred             cccccccccceeccccccccccchhcccccc-cccccCccccccccccceeecccCC-CcccChhHCCCCCC
Confidence            555555555555444 456677777777774 455544 456777778888887754 55777766556555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.2e-10  Score=75.17  Aligned_cols=98  Identities=23%  Similarity=0.342  Sum_probs=77.2

Q ss_pred             CCCCcEEeccCCcCCCcCC-cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCcccc-ccc
Q 046123            1 MKSLKTLVLSGCLKLKKFP-DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STI   77 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p-~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~   77 (108)
                      +++|++|++++| ....++ ..+....+|   +     .+++++|.++.+|+. +..+++|+.|++++| .+..+| .+|
T Consensus       104 l~~L~~L~l~~n-~~~~~~~~~~~~~~~L---~-----~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f  173 (284)
T d1ozna_         104 LGRLHTLHLDRC-GLQELGPGLFRGLAAL---Q-----YLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAF  173 (284)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTTTCTTC---C-----EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred             cccCCEEecCCc-ccccccccccchhccc---c-----hhhhccccccccChhHhccccchhhcccccC-cccccchhhh
Confidence            467889999884 555554 455667778   8     999999999988654 788899999999995 566654 577


Q ss_pred             cCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           78 NGLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        78 ~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .++++|+++++++|......|..|+.+++|+
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~  204 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ccccccchhhhhhccccccChhHhhhhhhcc
Confidence            8899999999999877777788888887764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=6.7e-10  Score=74.05  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=60.8

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCc-ccccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPA-SIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++++.|++++|......+..+..+..+   +     ++++++|.+.++++ .+.++++|++|++++| .+..+|+++..+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l---~-----~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l  241 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNL---A-----KLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH  241 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTC---C-----EEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccc---c-----ccccccccccccccccccccccceeeecccc-cccccccccccc
Confidence            456677777744333344556666666   7     88888888886644 4777888888888884 577788888888


Q ss_pred             CCCCEEeecCCCCCcccc
Q 046123           81 RSLRTLYLSGCSKLKNVP   98 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p   98 (108)
                      ++|+++++++|. ++.++
T Consensus       242 ~~L~~L~Ls~N~-i~~i~  258 (305)
T d1xkua_         242 KYIQVVYLHNNN-ISAIG  258 (305)
T ss_dssp             SSCCEEECCSSC-CCCCC
T ss_pred             cCCCEEECCCCc-cCccC
Confidence            888888888854 44544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.3e-10  Score=72.68  Aligned_cols=97  Identities=22%  Similarity=0.255  Sum_probs=52.6

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCc-------------
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCK-------------   68 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~-------------   68 (108)
                      ++|++|++++ +.++.+|. +..+++|   +     .|++++|++...+..+..+++|+.+++++|.             
T Consensus        55 ~~L~~L~L~~-N~l~~l~~-~~~l~~L---~-----~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  124 (266)
T d1p9ag_          55 TRLTQLNLDR-AELTKLQV-DGTLPVL---G-----TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG  124 (266)
T ss_dssp             TTCCEEECTT-SCCCEEEC-CSCCTTC---C-----EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred             cccccccccc-cccccccc-ccccccc---c-----ccccccccccccccccccccccccccccccccceeecccccccc
Confidence            4566666666 34555542 2445555   5     6666666555555555555555555555432             


Q ss_pred             ----------CCccccc-cccCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           69 ----------NLKSLPS-TINGLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        69 ----------~~~~lp~-~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                                .+..+|+ .+..+++++++++++|......+..|+.+++|+
T Consensus       125 ~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_         125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             ccccccccccccceeccccccccccchhcccccccccccCccccccccccc
Confidence                      2334443 345566777777777654444445566666553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.7e-09  Score=65.49  Aligned_cols=89  Identities=12%  Similarity=0.036  Sum_probs=70.6

Q ss_pred             CcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCc-cccccCcc-cccCCCCcEEeccCCcCCcccc-ccccCC
Q 046123            4 LKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGT-AIRGLPAS-IELLSGSVLLNLKDCKNLKSLP-STINGL   80 (108)
Q Consensus         4 L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~-~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l   80 (108)
                      .+.++.++ +...++|..+..+.++   +     .+++.++ .++.++.. |.++++|+.|++++ +.++.++ .+|.++
T Consensus        10 ~~~l~c~~-~~~~~~p~~l~~l~~l---~-----~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l   79 (156)
T d2ifga3          10 SSGLRCTR-DGALDSLHHLPGAENL---T-----ELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFT   79 (156)
T ss_dssp             SSCEECCS-SCCCTTTTTSCSCSCC---S-----EEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSC
T ss_pred             CCeEEecC-CCCccCcccccCcccc---C-----eeecCCCccccccCchhhccccccCcceeec-cccCCccccccccc
Confidence            45677777 5677888888888899   8     9999876 48888754 99999999999999 4677774 578999


Q ss_pred             CCCCEEeecCCCCCcccccC-cCC
Q 046123           81 RSLRTLYLSGCSKLKNVPET-LGK  103 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~-~~~  103 (108)
                      ++|+++++++|. +..+|.. |..
T Consensus        80 ~~L~~L~Ls~N~-l~~l~~~~~~~  102 (156)
T d2ifga3          80 PRLSRLNLSFNA-LESLSWKTVQG  102 (156)
T ss_dssp             SCCCEEECCSSC-CSCCCSTTTCS
T ss_pred             ccccceeccCCC-CcccChhhhcc
Confidence            999999999954 5667654 443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=9.1e-09  Score=68.38  Aligned_cols=95  Identities=21%  Similarity=0.235  Sum_probs=74.5

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccc-cCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRG-LPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      ++|+.+++++ +.+..+|..+  ..++   +     .+++++|.... .+..+.+++.++.|++++|......+..+.++
T Consensus       150 ~~L~~l~l~~-n~l~~l~~~~--~~~L---~-----~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         150 KKLSYIRIAD-TNITTIPQGL--PPSL---T-----ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             TTCCEEECCS-SCCCSCCSSC--CTTC---S-----EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             cccCcccccc-CCccccCccc--CCcc---C-----EEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            5688888988 4577776543  4677   8     99999998884 45668999999999999964443445678899


Q ss_pred             CCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           81 RSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        81 ~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      ++|++|++++| .+..+|..+.++++|+
T Consensus       219 ~~L~~L~L~~N-~L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         219 PHLRELHLNNN-KLVKVPGGLADHKYIQ  245 (305)
T ss_dssp             TTCCEEECCSS-CCSSCCTTTTTCSSCC
T ss_pred             ccceeeecccc-cccccccccccccCCC
Confidence            99999999996 5678898888888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=9.9e-09  Score=65.37  Aligned_cols=50  Identities=26%  Similarity=0.460  Sum_probs=26.8

Q ss_pred             cCCCCcEEeccCCcCCccccccccCCCCCCEEeecCCCCCcccccCcCCCCCCC
Q 046123           55 LLSGSVLLNLKDCKNLKSLPSTINGLRSLRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        55 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      .+++|+.+++++| .+..+++ ++++++|+.|++++|. +..+| .+.++++|+
T Consensus       154 ~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~  203 (210)
T d1h6ta2         154 RLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLD  203 (210)
T ss_dssp             GCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCS
T ss_pred             ccccccccccccc-ccccccc-ccCCCCCCEEECCCCC-CCCCh-hhcCCCCCC
Confidence            3445555555553 3334433 5666777777777653 44454 355555553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=9e-09  Score=65.02  Aligned_cols=53  Identities=13%  Similarity=0.154  Sum_probs=24.8

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKD   66 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~   66 (108)
                      +++.|++++ +.++.++ .+..+++|   +     +|++++|+++.+++ +.++++|+.+++++
T Consensus        41 ~l~~L~l~~-~~i~~l~-~l~~l~nL---~-----~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~   93 (199)
T d2omxa2          41 QVTTLQADR-LGIKSID-GVEYLNNL---T-----QINFSNNQLTDITP-LKNLTKLVDILMNN   93 (199)
T ss_dssp             TCCEEECTT-SCCCCCT-TGGGCTTC---C-----EEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             CCCEEECCC-CCCCCcc-ccccCCCc---C-----cCccccccccCccc-ccCCcccccccccc
Confidence            344555555 2344432 23444444   4     55555555544432 44555555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=3.9e-09  Score=71.54  Aligned_cols=91  Identities=12%  Similarity=0.162  Sum_probs=62.4

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ..++.+++.. +.+..++ .+..+..+   +     .+++++|+++.+++ +..+++|+.|++++| .+..++ ++++++
T Consensus       285 ~~l~~l~~~~-n~l~~~~-~~~~~~~l---~-----~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~-~l~~l~  351 (384)
T d2omza2         285 TALTNLELNE-NQLEDIS-PISNLKNL---T-----YLTLYFNNISDISP-VSSLTKLQRLFFANN-KVSDVS-SLANLT  351 (384)
T ss_dssp             TTCSEEECCS-SCCSCCG-GGGGCTTC---S-----EEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCT
T ss_pred             cccccccccc-ccccccc-ccchhccc---C-----eEECCCCCCCCCcc-cccCCCCCEEECCCC-CCCCCh-hHcCCC
Confidence            3456677776 3455543 35566777   7     88888888887653 778888888888885 566665 578888


Q ss_pred             CCCEEeecCCCCCcccccCcCCCCCC
Q 046123           82 SLRTLYLSGCSKLKNVPETLGKVESL  107 (108)
Q Consensus        82 ~L~~l~l~~~~~~~~~p~~~~~l~~L  107 (108)
                      +|+++++++|... .++. ++++++|
T Consensus       352 ~L~~L~l~~N~l~-~l~~-l~~l~~L  375 (384)
T d2omza2         352 NINWLSAGHNQIS-DLTP-LANLTRI  375 (384)
T ss_dssp             TCCEEECCSSCCC-BCGG-GTTCTTC
T ss_pred             CCCEEECCCCcCC-CChh-hccCCCC
Confidence            8888888886544 3432 5555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.86  E-value=2.4e-11  Score=77.60  Aligned_cols=77  Identities=23%  Similarity=0.227  Sum_probs=41.1

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++ +.++.++ .+..+.+|   +     .|++++|++..++..+..+..|+.|++++| .+..++ ++..++
T Consensus        48 ~~L~~L~Ls~-n~I~~i~-~l~~l~~L---~-----~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l~  115 (198)
T d1m9la_          48 KACKHLALST-NNIEKIS-SLSGMENL---R-----ILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLV  115 (198)
T ss_dssp             TTCCEEECSE-EEESCCC-CHHHHTTC---C-----EEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHH-HHHHHH
T ss_pred             cccceeECcc-cCCCCcc-cccCCccc---c-----Chhhcccccccccccccccccccccccccc-cccccc-cccccc
Confidence            4566677766 3555554 34555666   6     666666666655543444445555555553 343332 244445


Q ss_pred             CCCEEeecC
Q 046123           82 SLRTLYLSG   90 (108)
Q Consensus        82 ~L~~l~l~~   90 (108)
                      +|+++++++
T Consensus       116 ~L~~L~L~~  124 (198)
T d1m9la_         116 NLRVLYMSN  124 (198)
T ss_dssp             HSSEEEESE
T ss_pred             ccccccccc
Confidence            555555555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=1.7e-08  Score=63.68  Aligned_cols=78  Identities=15%  Similarity=0.279  Sum_probs=47.6

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCC
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGL   80 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l   80 (108)
                      +++|++|++++ +.++.+++ ++.+++|   +     .+++++|.+..++. +.+++.|+.+++++|. .... +.+..+
T Consensus        61 l~nL~~L~Ls~-N~l~~~~~-l~~l~~L---~-----~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~-~~~~-~~~~~l  127 (199)
T d2omxa2          61 LNNLTQINFSN-NQLTDITP-LKNLTKL---V-----DILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDI-DPLKNL  127 (199)
T ss_dssp             CTTCCEEECCS-SCCCCCGG-GTTCTTC---C-----EEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCC-GGGTTC
T ss_pred             CCCcCcCcccc-ccccCccc-ccCCccc---c-----cccccccccccccc-cccccccccccccccc-cccc-cccchh
Confidence            46788888888 46777654 6777777   7     88888777665543 5566666666666532 2222 224444


Q ss_pred             CCCCEEeecCC
Q 046123           81 RSLRTLYLSGC   91 (108)
Q Consensus        81 ~~L~~l~l~~~   91 (108)
                      ++|+++++++|
T Consensus       128 ~~L~~L~l~~n  138 (199)
T d2omxa2         128 TNLNRLELSSN  138 (199)
T ss_dssp             TTCSEEECCSS
T ss_pred             hhhHHhhhhhh
Confidence            55555555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=1.9e-08  Score=68.09  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=46.2

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      .+++.+++++ +.++++++ +..+++|   +     .|++++|+++.++ .+.++++|+.|++++| .+..+++ +.+++
T Consensus       307 ~~l~~L~ls~-n~l~~l~~-l~~l~~L---~-----~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~  373 (384)
T d2omza2         307 KNLTYLTLYF-NNISDISP-VSSLTKL---Q-----RLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTP-LANLT  373 (384)
T ss_dssp             TTCSEEECCS-SCCSCCGG-GGGCTTC---C-----EEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCBCGG-GTTCT
T ss_pred             cccCeEECCC-CCCCCCcc-cccCCCC---C-----EEECCCCCCCCCh-hHcCCCCCCEEECCCC-cCCCChh-hccCC
Confidence            3556666666 34555542 4556666   6     6666666666554 3666666777777663 4555544 56666


Q ss_pred             CCCEEeecCC
Q 046123           82 SLRTLYLSGC   91 (108)
Q Consensus        82 ~L~~l~l~~~   91 (108)
                      +|+.|++++|
T Consensus       374 ~L~~L~L~~N  383 (384)
T d2omza2         374 RITQLGLNDQ  383 (384)
T ss_dssp             TCSEEECCCE
T ss_pred             CCCEeeCCCC
Confidence            6666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.79  E-value=4.6e-11  Score=76.27  Aligned_cols=83  Identities=20%  Similarity=0.297  Sum_probs=67.5

Q ss_pred             CCCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCcccc--cccc
Q 046123            1 MKSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLP--STIN   78 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp--~~~~   78 (108)
                      +++|++|++++ +.++.+|.....+..|   +     .|++++|+++.++ .+..+++|+.|++++ +.+..++  ..+.
T Consensus        69 l~~L~~L~Ls~-N~i~~i~~~~~~~~~L---~-----~L~l~~N~i~~l~-~~~~l~~L~~L~L~~-N~i~~~~~~~~l~  137 (198)
T d1m9la_          69 MENLRILSLGR-NLIKKIENLDAVADTL---E-----ELWISYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLA  137 (198)
T ss_dssp             HTTCCEEECCE-EEECSCSSHHHHHHHC---C-----EEECSEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHT
T ss_pred             CccccChhhcc-cccccccccccccccc---c-----ccccccccccccc-ccccccccccccccc-chhcccccccccc
Confidence            36899999999 5788887655556678   8     9999999999774 488899999999998 4576665  3688


Q ss_pred             CCCCCCEEeecCCCCC
Q 046123           79 GLRSLRTLYLSGCSKL   94 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~   94 (108)
                      .+++|+++++++|...
T Consensus       138 ~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         138 ALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             TTTTCSEEEECSSHHH
T ss_pred             CCCccceeecCCCccc
Confidence            9999999999997543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=3e-08  Score=63.11  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDC   67 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~   67 (108)
                      ++|++|++++ +.++.+++ +..+.+|   +     ++++++|+++.++ .+..+++|+.+++.+|
T Consensus        68 ~~L~~L~L~~-n~i~~l~~-~~~l~~L---~-----~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          68 PNVTKLFLNG-NKLTDIKP-LANLKNL---G-----WLFLDENKVKDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             TTCCEEECCS-SCCCCCGG-GTTCTTC---C-----EEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred             CCCCEEeCCC-ccccCccc-cccCccc---c-----ccccccccccccc-cccccccccccccccc
Confidence            4566666666 34555442 3455555   5     6666666665554 3555556666666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=1.9e-08  Score=64.50  Aligned_cols=91  Identities=15%  Similarity=0.226  Sum_probs=63.2

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCCC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLRS   82 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~   82 (108)
                      .++.+.++++ .+.... .+..+.++   +     .+++++|.+...++ +..+++|+.|++++| .+..+++ ++++++
T Consensus       130 ~~~~l~~~~~-~~~~~~-~~~~~~~L---~-----~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~  196 (227)
T d1h6ua2         130 NLQVLYLDLN-QITNIS-PLAGLTNL---Q-----YLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP-LASLPN  196 (227)
T ss_dssp             TCCEEECCSS-CCCCCG-GGGGCTTC---C-----EEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTT
T ss_pred             chhhhhchhh-hhchhh-hhcccccc---c-----cccccccccccchh-hcccccceecccCCC-ccCCChh-hcCCCC
Confidence            4566677663 344332 34566777   7     88898888775543 788899999999885 5667655 788889


Q ss_pred             CCEEeecCCCCCcccccCcCCCCCCC
Q 046123           83 LRTLYLSGCSKLKNVPETLGKVESLE  108 (108)
Q Consensus        83 L~~l~l~~~~~~~~~p~~~~~l~~L~  108 (108)
                      |++|++++|+ +..++. ++++++|+
T Consensus       197 L~~L~Ls~N~-lt~i~~-l~~l~~L~  220 (227)
T d1h6ua2         197 LIEVHLKNNQ-ISDVSP-LANTSNLF  220 (227)
T ss_dssp             CCEEECTTSC-CCBCGG-GTTCTTCC
T ss_pred             CCEEECcCCc-CCCCcc-cccCCCCC
Confidence            9999999874 555653 55666553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4e-08  Score=63.12  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=54.0

Q ss_pred             CCcEEeccCCcCCCcCCc-ccCCccccccccCcceeEEEecCcccc-ccCc-ccccCCCCcEEeccCCcCCcccc-cccc
Q 046123            3 SLKTLVLSGCLKLKKFPD-IVGKSSQRKLQAGISSWSFILEGTAIR-GLPA-SIELLSGSVLLNLKDCKNLKSLP-STIN   78 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~-~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~   78 (108)
                      ++++|++++ +.++.+|+ .+..+.+|   +     ++++++|.+. .++. .|.+++.++.+.+..++.+...+ ..|.
T Consensus        30 ~l~~L~Ls~-n~i~~l~~~~f~~l~~L---~-----~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~  100 (242)
T d1xwdc1          30 NAIELRFVL-TKLRVIQKGAFSGFGDL---E-----KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  100 (242)
T ss_dssp             CCSEEEEES-CCCCEECTTTTTTCTTC---C-----EEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEE
T ss_pred             CCCEEECcC-CcCCccChhHhhccchh---h-----hhhhccccccceeecccccccccccccccccccccccccccccc
Confidence            567777777 46777763 45667777   7     7777777765 3433 36777777777776555554443 4567


Q ss_pred             CCCCCCEEeecCCC
Q 046123           79 GLRSLRTLYLSGCS   92 (108)
Q Consensus        79 ~l~~L~~l~l~~~~   92 (108)
                      ++++|+++++++|.
T Consensus       101 ~l~~L~~l~l~~~~  114 (242)
T d1xwdc1         101 NLPNLQYLLISNTG  114 (242)
T ss_dssp             CCTTCCEEEEESCC
T ss_pred             ccccccccccchhh
Confidence            77788888887754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.65  E-value=1.1e-07  Score=60.71  Aligned_cols=76  Identities=12%  Similarity=0.264  Sum_probs=54.6

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|+.|++++| .+...+. +..+.+|   +     .+++++|++.++++ +..+++|+.|++++| .+..+++ +++++
T Consensus       151 ~~L~~L~l~~n-~~~~~~~-l~~l~~L---~-----~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~  217 (227)
T d1h6ua2         151 TNLQYLSIGNA-QVSDLTP-LANLSKL---T-----TLKADDNKISDISP-LASLPNLIEVHLKNN-QISDVSP-LANTS  217 (227)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCTTC---C-----EEECCSSCCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCT
T ss_pred             ccccccccccc-ccccchh-hcccccc---e-----ecccCCCccCCChh-hcCCCCCCEEECcCC-cCCCCcc-cccCC
Confidence            46778888774 4554433 5667777   7     88888888777654 777888888888885 5667764 77788


Q ss_pred             CCCEEeecC
Q 046123           82 SLRTLYLSG   90 (108)
Q Consensus        82 ~L~~l~l~~   90 (108)
                      +|+++++++
T Consensus       218 ~L~~L~lsn  226 (227)
T d1h6ua2         218 NLFIVTLTN  226 (227)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCEEEeeC
Confidence            888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.3e-07  Score=60.59  Aligned_cols=93  Identities=12%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             cEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-cccCCCC
Q 046123            5 KTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-TINGLRS   82 (108)
Q Consensus         5 ~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~   82 (108)
                      ++++.++ ..++.+|..+.  ..+   +     +|++++|.+..+|+. |.++++|+.+++++|.....+++ +|.++..
T Consensus        11 ~~i~c~~-~~l~~iP~~l~--~~l---~-----~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1          11 RVFLCQE-SKVTEIPSDLP--RNA---I-----ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             SEEEEES-CSCSSCCSCSC--SCC---S-----EEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             CEEEEeC-CCCCCcCCCCC--CCC---C-----EEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence            5666666 56888886553  467   8     999999999988875 89999999999999766555554 6788999


Q ss_pred             CCEEeecCCCCCccc-ccCcCCCCCCC
Q 046123           83 LRTLYLSGCSKLKNV-PETLGKVESLE  108 (108)
Q Consensus        83 L~~l~l~~~~~~~~~-p~~~~~l~~L~  108 (108)
                      ++++.+..++.+... +..|.++++|+
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999998765555444 45677777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.51  E-value=3.9e-07  Score=60.46  Aligned_cols=49  Identities=18%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             CCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccC
Q 046123            3 SLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKD   66 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~   66 (108)
                      ++++|++++ +.++.+|+.   .++|   +     +|++++|+++++|+.+   .+|+.|++.+
T Consensus        39 ~l~~LdLs~-~~L~~lp~~---~~~L---~-----~L~Ls~N~l~~lp~~~---~~L~~L~l~~   87 (353)
T d1jl5a_          39 QAHELELNN-LGLSSLPEL---PPHL---E-----SLVASCNSLTELPELP---QSLKSLLVDN   87 (353)
T ss_dssp             TCSEEECTT-SCCSCCCSC---CTTC---S-----EEECCSSCCSSCCCCC---TTCCEEECCS
T ss_pred             CCCEEEeCC-CCCCCCCCC---CCCC---C-----EEECCCCCCcccccch---hhhhhhhhhh
Confidence            467777777 457777754   3456   6     7777777777766543   2445555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.41  E-value=8.6e-07  Score=58.75  Aligned_cols=75  Identities=19%  Similarity=0.295  Sum_probs=58.8

Q ss_pred             CCCcEEeccCCcCCCcCCcccCCccccccccCcceeEEEecCccccccCcccccCCCCcEEeccCCcCCccccccccCCC
Q 046123            2 KSLKTLVLSGCLKLKKFPDIVGKSSQRKLQAGISSWSFILEGTAIRGLPASIELLSGSVLLNLKDCKNLKSLPSTINGLR   81 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~   81 (108)
                      ++|++|++++ +.++++|..+   .+|   +     .|++.+|++..++.-   .+.|+.|++++| .+..+|+ ++.+.
T Consensus        58 ~~L~~L~Ls~-N~l~~lp~~~---~~L---~-----~L~l~~n~l~~l~~l---p~~L~~L~L~~n-~l~~lp~-~~~l~  120 (353)
T d1jl5a_          58 PHLESLVASC-NSLTELPELP---QSL---K-----SLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLPE-LQNSS  120 (353)
T ss_dssp             TTCSEEECCS-SCCSSCCCCC---TTC---C-----EEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCCC-CTTCT
T ss_pred             CCCCEEECCC-CCCcccccch---hhh---h-----hhhhhhcccchhhhh---cccccccccccc-ccccccc-hhhhc
Confidence            5789999998 6899998654   467   7     888999988876542   246899999984 5778876 57889


Q ss_pred             CCCEEeecCCCC
Q 046123           82 SLRTLYLSGCSK   93 (108)
Q Consensus        82 ~L~~l~l~~~~~   93 (108)
                      +|+++++++|..
T Consensus       121 ~L~~L~l~~~~~  132 (353)
T d1jl5a_         121 FLKIIDVDNNSL  132 (353)
T ss_dssp             TCCEEECCSSCC
T ss_pred             cceeeccccccc
Confidence            999999988543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=4.2e-07  Score=60.09  Aligned_cols=84  Identities=23%  Similarity=0.330  Sum_probs=53.1

Q ss_pred             CCcEEeccCCcCCCc-CCcccCCccccccccCcceeEEEecCcccc-ccCcccccCCCCcEEeccCCcCCcc--cccccc
Q 046123            3 SLKTLVLSGCLKLKK-FPDIVGKSSQRKLQAGISSWSFILEGTAIR-GLPASIELLSGSVLLNLKDCKNLKS--LPSTIN   78 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~-~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~--lp~~~~   78 (108)
                      +|++|++++|....+ +...+..+.+|   +     +|+++++.+. ..+..+..+++|+.|++++|..+.+  +..-..
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L---~-----~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~  118 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKL---Q-----NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS  118 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCC---S-----EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCc---c-----cccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhH
Confidence            577788877532222 23445666777   7     8888877766 4455567777888888887766543  222234


Q ss_pred             CCCCCCEEeecCCCCC
Q 046123           79 GLRSLRTLYLSGCSKL   94 (108)
Q Consensus        79 ~l~~L~~l~l~~~~~~   94 (108)
                      ++++|+++++++|...
T Consensus       119 ~~~~L~~L~ls~c~~~  134 (284)
T d2astb2         119 SCSRLDELNLSWCFDF  134 (284)
T ss_dssp             HCTTCCEEECCCCTTC
T ss_pred             HHHhcccccccccccc
Confidence            5677888888776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=7.5e-07  Score=58.84  Aligned_cols=83  Identities=27%  Similarity=0.297  Sum_probs=38.3

Q ss_pred             CCCcEEeccCCcCCCcC--CcccCC-ccccccccCcceeEEEecCcc--cc--ccCcccccCCCCcEEeccCCcCCc-cc
Q 046123            2 KSLKTLVLSGCLKLKKF--PDIVGK-SSQRKLQAGISSWSFILEGTA--IR--GLPASIELLSGSVLLNLKDCKNLK-SL   73 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~--p~~~~~-~~~L~~~~~~~~~~l~l~~~~--~~--~~p~~~~~l~~L~~L~l~~~~~~~-~l   73 (108)
                      ++|++|++++|..+.+.  ...+.. ...|   +     .++++++.  +.  .+..-...+++|+.|++++|..+. ..
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L---~-----~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~  192 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETI---T-----QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC  192 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTC---C-----EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             Hhccccccccccccccccchhhhccccccc---c-----hhhhcccccccccccccccccccccccccccccccCCCchh
Confidence            56777777776554331  111111 2344   4     55555431  22  122223345555555555544433 23


Q ss_pred             cccccCCCCCCEEeecCCC
Q 046123           74 PSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        74 p~~~~~l~~L~~l~l~~~~   92 (108)
                      ...+..+++|+++++++|+
T Consensus       193 ~~~l~~~~~L~~L~L~~C~  211 (284)
T d2astb2         193 FQEFFQLNYLQHLSLSRCY  211 (284)
T ss_dssp             GGGGGGCTTCCEEECTTCT
T ss_pred             hhhhcccCcCCEEECCCCC
Confidence            3344455555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.8e-07  Score=55.39  Aligned_cols=55  Identities=25%  Similarity=0.236  Sum_probs=25.7

Q ss_pred             EEEecCccccccC---cccccCCCCcEEeccCCcCCccccc-cccCCCCCCEEeecCCCC
Q 046123           38 SFILEGTAIRGLP---ASIELLSGSVLLNLKDCKNLKSLPS-TINGLRSLRTLYLSGCSK   93 (108)
Q Consensus        38 ~l~l~~~~~~~~p---~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~   93 (108)
                      +|++++|+++.++   ..+..+++|+.|++++ +.++.+++ ......+|+.+++++|..
T Consensus        69 ~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          69 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             CCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             EeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCc
Confidence            5555555555432   2244455555555555 33444443 112223455555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=5.4e-06  Score=56.36  Aligned_cols=34  Identities=32%  Similarity=0.352  Sum_probs=15.6

Q ss_pred             CCcEEeccCCcCCc----cccccccCCCCCCEEeecCC
Q 046123           58 GSVLLNLKDCKNLK----SLPSTINGLRSLRTLYLSGC   91 (108)
Q Consensus        58 ~L~~L~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~   91 (108)
                      +|+.|++++|....    .++.++..+++|+++++++|
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             CCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            45555555543111    12334444555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6.8e-06  Score=50.03  Aligned_cols=78  Identities=18%  Similarity=0.085  Sum_probs=52.8

Q ss_pred             CCCCcEEeccCCcCCCcCC---cccCCccccccccCcceeEEEecCccccccCcc-cccCCCCcEEeccCCcCCccccc-
Q 046123            1 MKSLKTLVLSGCLKLKKFP---DIVGKSSQRKLQAGISSWSFILEGTAIRGLPAS-IELLSGSVLLNLKDCKNLKSLPS-   75 (108)
Q Consensus         1 l~~L~~L~l~~~~~~~~~p---~~~~~~~~L~~~~~~~~~~l~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~lp~-   75 (108)
                      +++|++|++++ +.++.++   ..+..+++|   +     .|++++|.++++++. +.....|+.+++.+|+....... 
T Consensus        64 ~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L---~-----~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          64 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNL---K-----ILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             CTTCCCCCCCS-SCCCCCSGGGTHHHHSTTC---C-----CCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             CCCCCEeeCCC-ccccCCchhHHHHhhCCcc---c-----ccccccCccccchhhhhhhccccceeecCCCCcCcCcccc
Confidence            46788899998 5677664   334567778   8     889999998877653 34455788888988654332221 


Q ss_pred             ------cccCCCCCCEEe
Q 046123           76 ------TINGLRSLRTLY   87 (108)
Q Consensus        76 ------~~~~l~~L~~l~   87 (108)
                            .+..+++|++||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                  245577888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3.2e-05  Score=52.39  Aligned_cols=95  Identities=15%  Similarity=0.242  Sum_probs=64.5

Q ss_pred             CCcEEeccCCcCCCcC--CcccCCccccccccCcceeEEEecCcccc-----ccCcccccCCCCcEEeccCCcCCcc---
Q 046123            3 SLKTLVLSGCLKLKKF--PDIVGKSSQRKLQAGISSWSFILEGTAIR-----GLPASIELLSGSVLLNLKDCKNLKS---   72 (108)
Q Consensus         3 ~L~~L~l~~~~~~~~~--p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~~~---   72 (108)
                      .|+.||+++ +.+.+.  ...++.+.++   +     .+++++|+++     .++..+..+++|+.|++++|. +..   
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l---~-----~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~   72 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQC---Q-----VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGV   72 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTC---S-----EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHH
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhCCCC---C-----EEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHH
Confidence            578999998 567663  3445667888   8     9999999876     234446788999999999854 432   


Q ss_pred             --ccccccC-CCCCCEEeecCCCCCcc----cccCcCCCCCC
Q 046123           73 --LPSTING-LRSLRTLYLSGCSKLKN----VPETLGKVESL  107 (108)
Q Consensus        73 --lp~~~~~-l~~L~~l~l~~~~~~~~----~p~~~~~l~~L  107 (108)
                        +...+.. ..+|++|++++|...+.    ++..+..+++|
T Consensus        73 ~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L  114 (460)
T d1z7xw1          73 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL  114 (460)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTC
T ss_pred             HHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccc
Confidence              2333332 34799999999865432    34445555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.80  E-value=0.00058  Score=45.29  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             CCCcEEeccCCcCCCc------CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCc
Q 046123            2 KSLKTLVLSGCLKLKK------FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCK   68 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~------~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~   68 (108)
                      ++++.+++++| .+..      +...+...++|   +     .|++++|.+..     +...+..+++|+.|++++|.
T Consensus       186 ~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L---~-----~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         186 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQEL---K-----VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTC---C-----EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhcccccccc-cccccccccchhhhhcchhhh---c-----ccccccccccccccccccccccccccchhhhhhcCc
Confidence            34666666663 3322      11223344555   5     66666665531     23335566666666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.70  E-value=0.00059  Score=41.24  Aligned_cols=83  Identities=19%  Similarity=0.145  Sum_probs=55.7

Q ss_pred             CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCcCCc
Q 046123            2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK   71 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~   71 (108)
                      ++|+.|++++++.++.     +-..+.....+   +     .|++++|.+..     +...+...+.|+.|++++|....
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L---~-----~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHI---E-----KFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC---C-----EEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCcc---c-----eeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            5789999987544433     12234455667   7     99999998762     22335667889999999975332


Q ss_pred             c----ccccccCCCCCCEEeecCCC
Q 046123           72 S----LPSTINGLRSLRTLYLSGCS   92 (108)
Q Consensus        72 ~----lp~~~~~l~~L~~l~l~~~~   92 (108)
                      .    +-.++..-++|++|++++|.
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHHHHHhCCcCCEEECCCCc
Confidence            2    33356667789999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.27  E-value=0.0011  Score=43.92  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=40.7

Q ss_pred             EEEecCccccc------cCcccccCCCCcEEeccCCcCCc----cccccccCCCCCCEEeecCCCCCc
Q 046123           38 SFILEGTAIRG------LPASIELLSGSVLLNLKDCKNLK----SLPSTINGLRSLRTLYLSGCSKLK   95 (108)
Q Consensus        38 ~l~l~~~~~~~------~p~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~~~~   95 (108)
                      .+++++|++..      +...+..+++|+.|++++|....    .+...+...++|+++++++|...+
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            89998887752      23346678889999999864321    244556777889999998876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.06  E-value=0.022  Score=33.71  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=49.8

Q ss_pred             CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCcCCc
Q 046123            2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCKNLK   71 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~   71 (108)
                      ++|+.|++++++.++.     +-..+....++   +     .|++++|.+..     +...+...+.++.+++.+|....
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L---~-----~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYV---K-----KFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSC---C-----EEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCcc---C-----eeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            5688888877443432     22333456677   7     88998887652     22335667888888888764332


Q ss_pred             ----cccccccCCCCCCEEeec
Q 046123           72 ----SLPSTINGLRSLRTLYLS   89 (108)
Q Consensus        72 ----~lp~~~~~l~~L~~l~l~   89 (108)
                          .+-.++...++|+.+++.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECC
T ss_pred             hhHHHHHHHHHhCccccEEeec
Confidence                233456666778776664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.94  E-value=0.012  Score=35.11  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             CCCcEEeccCCcCCCc-----CCcccCCccccccccCcceeEEEecCccccc-----cCcccccCCCCcEEeccCCc--C
Q 046123            2 KSLKTLVLSGCLKLKK-----FPDIVGKSSQRKLQAGISSWSFILEGTAIRG-----LPASIELLSGSVLLNLKDCK--N   69 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~~l~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~--~   69 (108)
                      ++|++|++++| .+++     +...+.....+   +     .|++++|.+..     +...+...+.|+.|++.+|.  .
T Consensus        44 ~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L---~-----~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          44 KHIEKFSLANT-AISDSEARGLIELIETSPSL---R-----VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             SCCCEEECTTS-CCBHHHHTTHHHHHHHCSSC---C-----EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             Cccceeecccc-ccchhHHHHHhhhhhhcccc---c-----ceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            46899999995 4443     12333445667   7     99999998763     33346677889999998753  1


Q ss_pred             Cc-----cccccccCCCCCCEEeecCC
Q 046123           70 LK-----SLPSTINGLRSLRTLYLSGC   91 (108)
Q Consensus        70 ~~-----~lp~~~~~l~~L~~l~l~~~   91 (108)
                      ++     .+...+..-++|+.++++.+
T Consensus       115 ~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         115 LGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             ccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            21     13344555678999988763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.23  E-value=0.1  Score=30.60  Aligned_cols=81  Identities=11%  Similarity=0.144  Sum_probs=53.3

Q ss_pred             CCCcEEeccCCcCCCcC-----CcccCCccccccccCcceeEEEecCcccc-----ccCcccccCCCCcEEeccCCc-CC
Q 046123            2 KSLKTLVLSGCLKLKKF-----PDIVGKSSQRKLQAGISSWSFILEGTAIR-----GLPASIELLSGSVLLNLKDCK-NL   70 (108)
Q Consensus         2 ~~L~~L~l~~~~~~~~~-----p~~~~~~~~L~~~~~~~~~~l~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~-~~   70 (108)
                      ++|+.|++++| .++.-     ...+.....+   +     .+++.++.+.     .+...+...+.|+.+++..+. .+
T Consensus        46 ~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l---~-----~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          46 TYVKKFSIVGT-RSNDPVAFALAEMLKVNNTL---K-----SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             CSCCEEECTTS-CCCHHHHHHHHHHHHHCSSC---C-----EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             CccCeeeccCC-cccHHHHHHHHHHHhhcccc---h-----hhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcC
Confidence            57899999995 44332     2233344566   7     9999988764     234556778899987776432 33


Q ss_pred             c-----cccccccCCCCCCEEeecCC
Q 046123           71 K-----SLPSTINGLRSLRTLYLSGC   91 (108)
Q Consensus        71 ~-----~lp~~~~~l~~L~~l~l~~~   91 (108)
                      +     .+.+.+...++|+.+++..+
T Consensus       117 ~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         117 GNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            2     24445666788999998764