Citrus Sinensis ID: 046151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MNNNKAEADTSSSMADPETRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQVI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHcccccccccccEEEEEEEEccccccccHHccccccccccccEEEEEEEccccccccEEEEEEEEEcccccccHHccccccccccEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEcccHHHHHHHHHHccccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccHHHHHccccccEEEEEEEccccccccEEEEEEEcccccccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnnnkaeadtsssmadpetrptytthhlaipsgvtqdEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVrrfdqpqtykHFIKscsvsdnftmavgstrdvnvisglpaatsterldildddrqvtgfsiiggehrlrnyrsvtsvhgfnrdgAICTVVLESYvvdvpegnteedtRLFADTVVKLNLQKLVSVAESQVI
Flexible Loop (DISEMBL)
mnnnkaeadtsssmadpeTRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIsglpaatsterldildddrQVTGFsiiggehrlrnYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVsvaesqvi
Low Complexity Region (SEG)
MNNNKAEADTSSSMADPETRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQVI
Disordered region (IsUnstruct)
**************************HLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDV********************DRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVS*******
Disordered Region (DISOPRED)
****************************************ELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQVI
Disordered Region (DISEMBL)
*********************TYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV********
Disordered Region (DISPRO)
**************************HLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNNKAEADTSSSMADPETRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
O49686	191	Abscisic acid receptor PY	yes	no	0.846	0.926	0.740	4e-73
Q8VZS8	221	Abscisic acid receptor PY	no	no	0.961	0.909	0.674	2e-69
O80992	190	Abscisic acid receptor PY	no	no	0.827	0.910	0.562	3e-51
Q9SSM7	209	Abscisic acid receptor PY	no	no	0.832	0.832	0.497	2e-48
Q8S8E3	215	Abscisic acid receptor PY	no	no	0.746	0.725	0.550	3e-44
Q9FLB1	203	Abscisic acid receptor PY	no	no	0.751	0.773	0.512	4e-44
O80920	207	Abscisic acid receptor PY	no	no	0.799	0.806	0.563	3e-43
Q1ECF1	211	Abscisic acid receptor PY	no	no	0.765	0.758	0.518	4e-43
Q9FGM1	188	Abscisic acid receptor PY	no	no	0.770	0.856	0.490	6e-43
Q84MC7	187	Abscisic acid receptor PY	no	no	0.779	0.871	0.490	1e-41

>sp|O49686|PYR1_ARATH Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1

 Score =  274 bits (700), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 150/177 (84%)

Query: 30  IPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKH 89
           +PS +T +E  ELK S+ EFHTYQL    CSSL AQRI AP ++VWSIVRRFD+PQTYKH
Sbjct: 1   MPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKH 60

Query: 90  FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNY 149
           FIKSCSV  NF M VG TRDV VISGLPA TSTERLDILDD+R+VTGFSIIGGEHRL NY
Sbjct: 61  FIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNY 120

Query: 150 RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           +SVT+VH F ++  I TVVLESYVVD+PEGN+E+DTR+FADTVVKLNLQKL +VAE+
Sbjct: 121 KSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 177

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZS8|PYL1_ARATH Abscisic acid receptor PYL1 OS=Arabidopsis thaliana GN=PYL1 PE=1 SV=1

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 167/206 (81%), Gaps = 5/206 (2%)

Query: 6   AEADTSSSMADPE--TRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLL 63
           A +++SSS  + E  ++   T HH  +PS +TQDEF +L QS+ EFHTYQL   +CSSLL
Sbjct: 2   ANSESSSSPVNEEENSQRISTLHHQTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLL 61

Query: 64  AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTE 123
           AQRI AP + VWS+VRRFD+PQ YKHFIKSC+VS++F M VG TRDVNVISGLPA TS E
Sbjct: 62  AQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRE 121

Query: 124 RLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGA---ICTVVLESYVVDVPEGN 180
           RLD+LDDDR+VTGFSI GGEHRLRNY+SVT+VH F ++     I TVVLESYVVDVPEGN
Sbjct: 122 RLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGN 181

Query: 181 TEEDTRLFADTVVKLNLQKLVSVAES 206
           +EEDTRLFADTV++LNLQKL S+ E+
Sbjct: 182 SEEDTRLFADTVIRLNLQKLASITEA 207

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|O80992|PYL2_ARATH Abscisic acid receptor PYL2 OS=Arabidopsis thaliana GN=PYL2 PE=1 SV=1

 Score =  201 bits (510), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 3/176 (1%)

Query: 33  GVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK 92
           G+T +E   L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K
Sbjct: 9   GLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVK 68

Query: 93  SCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSV 152
            C +       VGS R+V VISGLPA+TSTERL+ +DDD +V  F ++GGEHRL+NY+SV
Sbjct: 69  RCRLISG-DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSV 127

Query: 153 TSVHGF-NRD-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           TSV+ F N+D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 128 TSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 183

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSM7|PYL3_ARATH Abscisic acid receptor PYL3 OS=Arabidopsis thaliana GN=PYL3 PE=1 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 9/183 (4%)

Query: 31  PSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHF 90
           P G+T+DEF  L   +   HT+  S N C+SL+A R+ AP   +W  VR F  P  YKHF
Sbjct: 22  PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHF 81

Query: 91  IKSCSVSDNFT----MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRL 146
           IKSC++  N      + VG+ R+V+V+SGLPA+TS E L++LD+++++  F ++GGEHRL
Sbjct: 82  IKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRL 141

Query: 147 RNYRSVTSVHGF-----NRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV 201
            NYRSVTSV+ F     ++   + +VVLESY+VD+P+GNTEEDTR+F DTVVK NLQ L 
Sbjct: 142 NNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLA 201

Query: 202 SVA 204
            ++
Sbjct: 202 VIS 204

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8E3|PYL6_ARATH Abscisic acid receptor PYL6 OS=Arabidopsis thaliana GN=PYL6 PE=1 SV=1

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 2/158 (1%)

Query: 50  HTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRD 109
           HT+ +  +QC S++ Q + AP   VWSI+ RF+ PQ YKHF+KSC V       VGS R+
Sbjct: 52  HTHVVGPSQCFSVVVQDVEAPVSTVWSILSRFEHPQAYKHFVKSCHVVIGDGREVGSVRE 111

Query: 110 VNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF--NRDGAICTV 167
           V V+SGLPAA S ERL+I+DDDR V  FS++GG+HRL NY+SVT+VH    + DG   T 
Sbjct: 112 VRVVSGLPAAFSLERLEIMDDDRHVISFSVVGGDHRLMNYKSVTTVHESEEDSDGKKRTR 171

Query: 168 VLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
           V+ESYVVDVP GN +E+T  FADT+V+ NLQ L  +AE
Sbjct: 172 VVESYVVDVPAGNDKEETCSFADTIVRCNLQSLAKLAE 209

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB1|PYL5_ARATH Abscisic acid receptor PYL5 OS=Arabidopsis thaliana GN=PYL5 PE=1 SV=1

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 115/160 (71%), Gaps = 3/160 (1%)

Query: 41  ELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNF 100
            + + V   HT+ +  +QC S + Q I AP + VW++VRRFD P+ YK+FI+ C +    
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGD 99

Query: 101 TMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNR 160
            + VG  R+V V+SGLPA +STERL+ILD++R V  FS++GG+HRL+NYRSVT++H  + 
Sbjct: 100 GLHVGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHASDD 159

Query: 161 DGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKL 200
           +G   TVV+ESY+VDVP GNTEE+T  F DT+V+ NLQ L
Sbjct: 160 EG---TVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSL 196

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|O80920|PYL4_ARATH Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 120/172 (69%), Gaps = 5/172 (2%)

Query: 36  QDEFDELKQ--SVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKS 93
           Q  F  L +  +   FHT+++  NQC S + Q I AP   VWS+VRRFD PQ YKHF+KS
Sbjct: 27  QKRFPSLSRDSTAARFHTHEVGPNQCCSAVIQEISAPISTVWSVVRRFDNPQAYKHFLKS 86

Query: 94  CSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVT 153
           CSV       VGS R V+V+SGLPAA+STERLDILDD+R V  FS++GG+HRL NYRSVT
Sbjct: 87  CSVIGGDGDNVGSLRQVHVVSGLPAASSTERLDILDDERHVISFSVVGGDHRLSNYRSVT 146

Query: 154 SVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
           ++H     G   TVV+ESYVVDVP GNT+E+T  F D +V+ NLQ L  +AE
Sbjct: 147 TLHPSPISG---TVVVESYVVDVPPGNTKEETCDFVDVIVRCNLQSLAKIAE 195

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECF1|PYL7_ARATH Abscisic acid receptor PYL7 OS=Arabidopsis thaliana GN=PYL7 PE=1 SV=1

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 116/162 (71%), Gaps = 2/162 (1%)

Query: 44  QSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMA 103
           QS+   H +   +NQC+S+L + I+AP  +VWS+VRRFDQPQ YK FI  C+V  N    
Sbjct: 21  QSLRLRHLHHCRENQCTSVLVKYIQAPVHLVWSLVRRFDQPQKYKPFISRCTV--NGDPE 78

Query: 104 VGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGA 163
           +G  R+VNV SGLPA TSTERL+ LDD+  + G +IIGG+HRL+NY S+ +VH    DG 
Sbjct: 79  IGCLREVNVKSGLPATTSTERLEQLDDEEHILGINIIGGDHRLKNYSSILTVHPEMIDGR 138

Query: 164 ICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
             T+V+ES+VVDVP+GNT++DT  F ++++K NL+ L  V+E
Sbjct: 139 SGTMVMESFVVDVPQGNTKDDTCYFVESLIKCNLKSLACVSE 180

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGM1|PYL8_ARATH Abscisic acid receptor PYL8 OS=Arabidopsis thaliana GN=PYL8 PE=1 SV=1

 Score =  174 bits (440), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 114/163 (69%), Gaps = 2/163 (1%)

Query: 43  KQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTM 102
           ++ +   H ++L  NQCSS L + I AP  +VWS+VRRFDQPQ YK FI  C V  N  M
Sbjct: 16  REFIRRHHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQPQKYKPFISRCVVKGN--M 73

Query: 103 AVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDG 162
            +G+ R+V+V SGLPA  STERL++LDD+  +    I+GG+HRL+NY S+ S+H    +G
Sbjct: 74  EIGTVREVDVKSGLPATRSTERLELLDDNEHILSIRIVGGDHRLKNYSSIISLHPETIEG 133

Query: 163 AICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
            I T+V+ES+VVDVPEGNT+++T  F + ++K NL+ L  ++E
Sbjct: 134 RIGTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 176

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84MC7|PYL9_ARATH Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 115/165 (69%), Gaps = 2/165 (1%)

Query: 41  ELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNF 100
           E  Q V   H +   +NQC+S L + I+AP  +VWS+VRRFDQPQ YK F+  C+V  + 
Sbjct: 16  ETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGD- 74

Query: 101 TMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNR 160
              +GS R+VNV SGLPA TSTERL++LDD+  + G  IIGG+HRL+NY S+ +VH    
Sbjct: 75  -PEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEII 133

Query: 161 DGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
           +G   T+V+ES+VVDVP+GNT+++T  F + +++ NL+ L  V+E
Sbjct: 134 EGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSE 178

Receptor for abscisic acid (ABA) required for ABA-mediated responses such as stomatal closure and germination inhibition. Inhibits the activity of group-A protein phosphatases type 2C (PP2Cs) when activated by ABA. Confers enhanced sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
255557579	215	conserved hypothetical protein [Ricinus	0.937	0.911	0.806	1e-89
224138116	203	predicted protein [Populus trichocarpa]	0.923	0.950	0.789	2e-85
224126473	203	predicted protein [Populus trichocarpa]	0.933	0.960	0.781	7e-85
449461497	232	PREDICTED: abscisic acid receptor PYR1-l	0.875	0.788	0.786	1e-80
326367315	208	abscisic acid receptor PYR1 [Fragaria x	0.937	0.942	0.715	3e-80
449462015	224	PREDICTED: abscisic acid receptor PYR1-l	0.885	0.825	0.759	3e-78
297742099	286	unnamed protein product [Vitis vinifera]	0.952	0.695	0.729	2e-75
225427209	214	PREDICTED: abscisic acid receptor PYR1-l	0.956	0.934	0.725	4e-75
357485255	327	Abscisic acid receptor PYR1 [Medicago tr	0.971	0.620	0.689	6e-75
356526719	212	PREDICTED: abscisic acid receptor PYR1-l	0.947	0.933	0.705	6e-75

>gi|255557579|ref|XP_002519819.1| conserved hypothetical protein [Ricinus communis] gi|223540865|gb|EEF42423.1| conserved hypothetical protein [Ricinus communis]

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/196 (80%), Positives = 172/196 (87%)

Query: 10  TSSSMADPETRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRA 69
           +SS M DPE  PTYT+HHL IPSG+T  EF+EL   + EFHTY+++ +QCSSLLAQR+ A
Sbjct: 7   SSSPMTDPEQEPTYTSHHLTIPSGLTPSEFEELSPLISEFHTYRINPSQCSSLLAQRVNA 66

Query: 70  PNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILD 129
           PNDVVWS VRRFD+PQTYKHFIKSC+V   FTM VGSTRDVNVISGLPAATSTERLDILD
Sbjct: 67  PNDVVWSKVRRFDKPQTYKHFIKSCAVEPGFTMTVGSTRDVNVISGLPAATSTERLDILD 126

Query: 130 DDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFA 189
           DDR VTGF+IIGGEHRLRNYRSVT+VHGF RDG I TVVLESYVVDVPEGNTEEDTRLFA
Sbjct: 127 DDRHVTGFTIIGGEHRLRNYRSVTTVHGFQRDGRIWTVVLESYVVDVPEGNTEEDTRLFA 186

Query: 190 DTVVKLNLQKLVSVAE 205
           DTVVKLNLQKL  VAE
Sbjct: 187 DTVVKLNLQKLAFVAE 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138116|ref|XP_002326522.1| predicted protein [Populus trichocarpa] gi|222833844|gb|EEE72321.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 168/195 (86%), Gaps = 2/195 (1%)

Query: 14  MADP-ETRPT-YTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPN 71
           M DP +  PT YTTHH+ IP  +TQ EFDEL   + EFH Y++   QCSSLLAQRI APN
Sbjct: 1   MTDPAQQEPTTYTTHHVTIPPSLTQSEFDELNPLITEFHNYRIRPGQCSSLLAQRINAPN 60

Query: 72  DVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDD 131
           D+VWS+ RRFD+PQTYKHFIKSCSV+  FTM VGSTRDVNVISGLPAATSTERLDILDD+
Sbjct: 61  DLVWSLARRFDKPQTYKHFIKSCSVAPGFTMTVGSTRDVNVISGLPAATSTERLDILDDE 120

Query: 132 RQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADT 191
           RQVTGFSIIGGEHRL+NYRSVT+VHGF R+G I TVVLESYVVDVPEGNTEEDTRLFADT
Sbjct: 121 RQVTGFSIIGGEHRLKNYRSVTTVHGFEREGKIWTVVLESYVVDVPEGNTEEDTRLFADT 180

Query: 192 VVKLNLQKLVSVAES 206
           VVKLNLQKL SVAE 
Sbjct: 181 VVKLNLQKLASVAEG 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126473|ref|XP_002329563.1| predicted protein [Populus trichocarpa] gi|222870272|gb|EEF07403.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 154/197 (78%), Positives = 169/197 (85%), Gaps = 2/197 (1%)

Query: 14  MADPETRPTY--TTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPN 71
           M DPE + +   TTHH+ IPSG+TQ E +EL   + EFHTY++S  QCSSLLAQ I APN
Sbjct: 1   MTDPEQQESIASTTHHITIPSGLTQSESEELAPLITEFHTYRISAGQCSSLLAQLISAPN 60

Query: 72  DVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDD 131
           D VWSIVRRFD+PQTYKHFIKSCSV   FTM VGSTRDVNVISGLPAATSTERLDILDD+
Sbjct: 61  DTVWSIVRRFDKPQTYKHFIKSCSVGPGFTMTVGSTRDVNVISGLPAATSTERLDILDDE 120

Query: 132 RQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADT 191
           +Q+TGFSIIGGEHRLRNYRSVT+VHGF R+G I TVVLESYVVDVPEGNTEE+ RLFADT
Sbjct: 121 QQLTGFSIIGGEHRLRNYRSVTTVHGFEREGKIRTVVLESYVVDVPEGNTEEEARLFADT 180

Query: 192 VVKLNLQKLVSVAESQV 208
           VVKLNLQKL SVAES V
Sbjct: 181 VVKLNLQKLASVAESLV 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461497|ref|XP_004148478.1| PREDICTED: abscisic acid receptor PYR1-like [Cucumis sativus] gi|449526876|ref|XP_004170439.1| PREDICTED: abscisic acid receptor PYR1-like [Cucumis sativus]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/183 (78%), Positives = 157/183 (85%)

Query: 26  HHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQ 85
           HHL +P G+TQ EFD LK  + EFHTY+L   QCSSLL+Q IRAP DVVWS+VRRFD+PQ
Sbjct: 28  HHLTVPPGLTQHEFDNLKNLIFEFHTYELRPGQCSSLLSQLIRAPRDVVWSVVRRFDKPQ 87

Query: 86  TYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHR 145
           TYKHFIKSC+V+++F M VG TRDVNVISGLPAATSTERLDILDDDR VTGFSI GGEHR
Sbjct: 88  TYKHFIKSCTVAEDFIMTVGCTRDVNVISGLPAATSTERLDILDDDRCVTGFSITGGEHR 147

Query: 146 LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
           LRNYRSVT+VH   RDG I TVVLESY+VDVPEGNTEEDTRLFADTVVKLNLQKL SV E
Sbjct: 148 LRNYRSVTTVHEMERDGQIWTVVLESYIVDVPEGNTEEDTRLFADTVVKLNLQKLTSVTE 207

Query: 206 SQV 208
             V
Sbjct: 208 GMV 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326367315|gb|ADZ55282.1| abscisic acid receptor PYR1 [Fragaria x ananassa]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 143/200 (71%), Positives = 167/200 (83%), Gaps = 4/200 (2%)

Query: 7   EADTSSSMADPETRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQR 66
           E  +S++  DPE+    + HHL +PSG+TQ EFD+LK  V EFHTY++    CSSLLAQR
Sbjct: 2   EKPSSAAEQDPES----SQHHLTVPSGLTQSEFDDLKPVVAEFHTYRVGPGHCSSLLAQR 57

Query: 67  IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
           I AP + VW +VRRFD+PQTYKHFI+SC+V + F M+VG TRDVNVISGLPAATSTERLD
Sbjct: 58  IHAPLETVWKVVRRFDKPQTYKHFIRSCTVKEGFVMSVGCTRDVNVISGLPAATSTERLD 117

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTR 186
           +LD++  VTGFSIIGGEHRLRNYRSVT+VHGF RDG I TVVLESYVVDVPEGN+EEDTR
Sbjct: 118 LLDEEGHVTGFSIIGGEHRLRNYRSVTTVHGFERDGRIWTVVLESYVVDVPEGNSEEDTR 177

Query: 187 LFADTVVKLNLQKLVSVAES 206
           LFADTVV+LNLQKL SV E+
Sbjct: 178 LFADTVVRLNLQKLASVTEA 197

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462015|ref|XP_004148737.1| PREDICTED: abscisic acid receptor PYR1-like [Cucumis sativus] gi|449523401|ref|XP_004168712.1| PREDICTED: abscisic acid receptor PYR1-like [Cucumis sativus]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 142/187 (75%), Positives = 161/187 (86%), Gaps = 2/187 (1%)

Query: 22  TY-TTHHL-AIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVR 79
           TY TTHHL A+PSG+TQ+EFDELK  V EFH Y+L++ +CSSLLAQR++AP++ VWSIVR
Sbjct: 31  TYLTTHHLSALPSGLTQEEFDELKDLVAEFHIYKLTRGRCSSLLAQRVQAPSEAVWSIVR 90

Query: 80  RFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSI 139
           RFDQPQ+YKHFIKSC+VS+ FTM +G TR+VNVISGLPA TSTERLDI DD+R V GFSI
Sbjct: 91  RFDQPQSYKHFIKSCTVSEGFTMKLGCTREVNVISGLPADTSTERLDIHDDERHVIGFSI 150

Query: 140 IGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQK 199
           IGGEHRLRNYRSVTSVH   RDG I +VVLESY VDVP GNTEED RLFADTVV+LNLQK
Sbjct: 151 IGGEHRLRNYRSVTSVHQLERDGQIWSVVLESYAVDVPPGNTEEDARLFADTVVRLNLQK 210

Query: 200 LVSVAES 206
           L SV E 
Sbjct: 211 LASVVEG 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742099|emb|CBI33886.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/207 (72%), Positives = 165/207 (79%), Gaps = 8/207 (3%)

Query: 4   NKAEADTSSSMADPETRPT----YTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQC 59
           NKAE   +SSMA+ E+  +     TTHHL IP G+TQ EF EL  S+ EFHTYQ+   QC
Sbjct: 24  NKAE---TSSMAEAESEDSETTTPTTHHLTIPPGLTQPEFQELAHSISEFHTYQVGPGQC 80

Query: 60  SSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA 119
           SSLLAQR+ AP   VWS+VRRFD+PQTYKHFIKSC V D F M VG  RDVNVISGLPA 
Sbjct: 81  SSLLAQRVHAPLPTVWSVVRRFDKPQTYKHFIKSCHVEDGFEMRVGCLRDVNVISGLPAE 140

Query: 120 TSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF-NRDGAICTVVLESYVVDVPE 178
           TSTERLDILDD+R VTGFSIIGGEHRLRNYRSVT+VH + N  G I TVVLESYVVD+PE
Sbjct: 141 TSTERLDILDDERHVTGFSIIGGEHRLRNYRSVTTVHEYQNHGGEIWTVVLESYVVDMPE 200

Query: 179 GNTEEDTRLFADTVVKLNLQKLVSVAE 205
           GNTEEDTRLFADTVVKLNLQKL SV E
Sbjct: 201 GNTEEDTRLFADTVVKLNLQKLASVTE 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427209|ref|XP_002280361.1| PREDICTED: abscisic acid receptor PYR1-like [Vitis vinifera]

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 151/208 (72%), Positives = 165/208 (79%), Gaps = 8/208 (3%)

Query: 4   NKAEADTSSSMADPETRPT----YTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQC 59
           NKAE   +SSMA+ E+  +     TTHHL IP G+TQ EF EL  S+ EFHTYQ+   QC
Sbjct: 2   NKAE---TSSMAEAESEDSETTTPTTHHLTIPPGLTQPEFQELAHSISEFHTYQVGPGQC 58

Query: 60  SSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA 119
           SSLLAQR+ AP   VWS+VRRFD+PQTYKHFIKSC V D F M VG  RDVNVISGLPA 
Sbjct: 59  SSLLAQRVHAPLPTVWSVVRRFDKPQTYKHFIKSCHVEDGFEMRVGCLRDVNVISGLPAE 118

Query: 120 TSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF-NRDGAICTVVLESYVVDVPE 178
           TSTERLDILDD+R VTGFSIIGGEHRLRNYRSVT+VH + N  G I TVVLESYVVD+PE
Sbjct: 119 TSTERLDILDDERHVTGFSIIGGEHRLRNYRSVTTVHEYQNHGGEIWTVVLESYVVDMPE 178

Query: 179 GNTEEDTRLFADTVVKLNLQKLVSVAES 206
           GNTEEDTRLFADTVVKLNLQKL SV E 
Sbjct: 179 GNTEEDTRLFADTVVKLNLQKLASVTEG 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485255|ref|XP_003612915.1| Abscisic acid receptor PYR1 [Medicago truncatula] gi|355514250|gb|AES95873.1| Abscisic acid receptor PYR1 [Medicago truncatula]

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 142/206 (68%), Positives = 160/206 (77%), Gaps = 3/206 (1%)

Query: 5   KAEADTSSSMADPETRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLA 64
           KAE+ T+S+          T HHL +PSG+ Q EFD L   +   HTY +  NQCS+LLA
Sbjct: 3   KAESSTASTSDQDSDENHRTQHHLTLPSGLRQHEFDSLIPFINSHHTYLIGPNQCSTLLA 62

Query: 65  QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTER 124
           QRI AP   VWS+VR FD+PQ YKHFIKSCS+ + F M VG TRDVNVISGLPAATSTER
Sbjct: 63  QRIHAPPQTVWSVVRSFDKPQIYKHFIKSCSLKEGFQMKVGCTRDVNVISGLPAATSTER 122

Query: 125 LDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNT 181
           LD+LDD+R+VTGFSIIGGEHRL+NYRSVTSVHGF   +  G I TVVLESYVVDVPEGNT
Sbjct: 123 LDVLDDERRVTGFSIIGGEHRLKNYRSVTSVHGFGDGDNGGEIWTVVLESYVVDVPEGNT 182

Query: 182 EEDTRLFADTVVKLNLQKLVSVAESQ 207
           EEDTRLFADTVVKLNLQKL SV E +
Sbjct: 183 EEDTRLFADTVVKLNLQKLASVTEGK 208

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526719|ref|XP_003531964.1| PREDICTED: abscisic acid receptor PYR1-like [Glycine max]

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/200 (70%), Positives = 162/200 (81%), Gaps = 2/200 (1%)

Query: 9   DTSSSMADPETRPTYTT-HHLAIPSGVTQDEFDELKQSVVEFHTYQLSQN-QCSSLLAQR 66
           D + S  + +  PT+ T +HL  P G+T +EF++LK SV+E HTY ++   QCSSLLAQR
Sbjct: 2   DKTHSGEEQDPNPTHPTRNHLDPPPGLTPEEFEDLKPSVLEHHTYSVTPTRQCSSLLAQR 61

Query: 67  IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
           I AP   VW++VR FD PQ YKHFIKSC V + F +AVGSTRDV+VISGLPAATSTERLD
Sbjct: 62  IHAPPHTVWTVVRCFDNPQAYKHFIKSCHVKEGFQLAVGSTRDVHVISGLPAATSTERLD 121

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTR 186
           +LDDDR V GF+I+GG+HRLRNYRSVTSVHGF RDG I TVVLESYVVDVPEGNTEEDTR
Sbjct: 122 LLDDDRHVIGFTIVGGDHRLRNYRSVTSVHGFERDGKIWTVVLESYVVDVPEGNTEEDTR 181

Query: 187 LFADTVVKLNLQKLVSVAES 206
           LFADTVVKLNLQKL SV E 
Sbjct: 182 LFADTVVKLNLQKLASVTEG 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2178585	221	PYL1 "PYR1-like 1" [Arabidopsi	0.961	0.909	0.674	4.3e-70
TAIR|locus:2141040	191	PYR1 "PYRABACTIN RESISTANCE 1"	0.846	0.926	0.740	2.2e-66
TAIR|locus:2057407	190	PYL2 "PYR1-like 2" [Arabidopsi	0.827	0.910	0.562	1.1e-48
TAIR|locus:2057175	207	PYL4 "PYR1-like 4" [Arabidopsi	0.803	0.811	0.560	3e-46
TAIR|locus:2032738	209	PYL3 "AT1G73000" [Arabidopsis	0.899	0.899	0.484	3e-46
TAIR|locus:2063063	215	PYL6 "PYR1-like 6" [Arabidopsi	0.947	0.920	0.470	1.2e-42
TAIR|locus:2153549	203	PYL5 "PYRABACTIN RESISTANCE 1-	0.770	0.793	0.506	6.6e-42
TAIR|locus:2163731	188	RCAR3 "regulatory components o	0.770	0.856	0.490	1.6e-40
TAIR|locus:505006424	211	PYL7 "PYR1-like 7" [Arabidopsi	0.765	0.758	0.518	4.2e-40
TAIR|locus:2035227	187	RCAR1 "regulatory component of	0.779	0.871	0.490	1.4e-39

TAIR|locus:2178585 PYL1 "PYR1-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 139/206 (67%), Positives = 167/206 (81%)

Query:     6 AEADTSSSMADPE--TRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLL 63
             A +++SSS  + E  ++   T HH  +PS +TQDEF +L QS+ EFHTYQL   +CSSLL
Sbjct:     2 ANSESSSSPVNEEENSQRISTLHHQTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLL 61

Query:    64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTE 123
             AQRI AP + VWS+VRRFD+PQ YKHFIKSC+VS++F M VG TRDVNVISGLPA TS E
Sbjct:    62 AQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRE 121

Query:   124 RLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGA---ICTVVLESYVVDVPEGN 180
             RLD+LDDDR+VTGFSI GGEHRLRNY+SVT+VH F ++     I TVVLESYVVDVPEGN
Sbjct:   122 RLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGN 181

Query:   181 TEEDTRLFADTVVKLNLQKLVSVAES 206
             +EEDTRLFADTV++LNLQKL S+ E+
Sbjct:   182 SEEDTRLFADTVIRLNLQKLASITEA 207

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

GO:0010427 "abscisic acid binding" evidence=IDA

GO:0080163 "regulation of protein serine/threonine phosphatase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2141040 PYR1 "PYRABACTIN RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 131/177 (74%), Positives = 150/177 (84%)

Query:    30 IPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKH 89
             +PS +T +E  ELK S+ EFHTYQL    CSSL AQRI AP ++VWSIVRRFD+PQTYKH
Sbjct:     1 MPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKH 60

Query:    90 FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNY 149
             FIKSCSV  NF M VG TRDV VISGLPA TSTERLDILDD+R+VTGFSIIGGEHRL NY
Sbjct:    61 FIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNY 120

Query:   150 RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
             +SVT+VH F ++  I TVVLESYVVD+PEGN+E+DTR+FADTVVKLNLQKL +VAE+
Sbjct:   121 KSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 177

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA;IPI

GO:0010427 "abscisic acid binding" evidence=IDA

GO:0080163 "regulation of protein serine/threonine phosphatase activity" evidence=IDA

GO:0004872 "receptor activity" evidence=IMP;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA;IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2057407 PYL2 "PYR1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 99/176 (56%), Positives = 128/176 (72%)

Query:    33 GVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK 92
             G+T +E   L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K
Sbjct:     9 GLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVK 68

Query:    93 SCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSV 152
              C +       VGS R+V VISGLPA+TSTERL+ +DDD +V  F ++GGEHRL+NY+SV
Sbjct:    69 RCRLISG-DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSV 127

Query:   153 TSVHGF-NRD-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
             TSV+ F N+D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct:   128 TSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 183

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2057175 PYL4 "PYR1-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 97/173 (56%), Positives = 121/173 (69%)

Query:    36 QDEFDELKQ--SVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKS 93
             Q  F  L +  +   FHT+++  NQC S + Q I AP   VWS+VRRFD PQ YKHF+KS
Sbjct:    27 QKRFPSLSRDSTAARFHTHEVGPNQCCSAVIQEISAPISTVWSVVRRFDNPQAYKHFLKS 86

Query:    94 CSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVT 153
             CSV       VGS R V+V+SGLPAA+STERLDILDD+R V  FS++GG+HRL NYRSVT
Sbjct:    87 CSVIGGDGDNVGSLRQVHVVSGLPAASSTERLDILDDERHVISFSVVGGDHRLSNYRSVT 146

Query:   154 SVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
             ++H     G   TVV+ESYVVDVP GNT+E+T  F D +V+ NLQ L  +AE+
Sbjct:   147 TLHPSPISG---TVVVESYVVDVPPGNTKEETCDFVDVIVRCNLQSLAKIAEN 196

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IGI;IDA

TAIR|locus:2032738 PYL3 "AT1G73000" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 96/198 (48%), Positives = 134/198 (67%)

Query:    16 DPETRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVW 75
             DP +  T TT   + P G+T+DEF  L   +   HT+  S N C+SL+A R+ AP   +W
Sbjct:     8 DPSSSSTTTTSS-STPYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIW 66

Query:    76 SIVRRFDQPQTYKHFIKSCSVSDNFT----MAVGSTRDVNVISGLPAATSTERLDILDDD 131
               VR F  P  YKHFIKSC++  N      + VG+ R+V+V+SGLPA+TS E L++LD++
Sbjct:    67 RFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEE 126

Query:   132 RQVTGFSIIGGEHRLRNYRSVTSVHGF-----NRDGAICTVVLESYVVDVPEGNTEEDTR 186
             +++  F ++GGEHRL NYRSVTSV+ F     ++   + +VVLESY+VD+P+GNTEEDTR
Sbjct:   127 KRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTR 186

Query:   187 LFADTVVKLNLQKLVSVA 204
             +F DTVVK NLQ L  ++
Sbjct:   187 MFVDTVVKSNLQNLAVIS 204

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2063063 PYL6 "PYR1-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 95/202 (47%), Positives = 128/202 (63%)

Query:     8 ADTSSSMADPETRPTYTTHHLAIPSGVTQDE-FDELKQSVVEFHTYQLSQNQCSSLLAQR 66
             + T++  A+   R  Y  HH      V+      ++ + V   HT+ +  +QC S++ Q 
Sbjct:    10 SSTAAEAANATVR-NYPHHHQKQVQKVSLTRGMADVPEHVELSHTHVVGPSQCFSVVVQD 68

Query:    67 IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
             + AP   VWSI+ RF+ PQ YKHF+KSC V       VGS R+V V+SGLPAA S ERL+
Sbjct:    69 VEAPVSTVWSILSRFEHPQAYKHFVKSCHVVIGDGREVGSVREVRVVSGLPAAFSLERLE 128

Query:   127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRD--GAICTVVLESYVVDVPEGNTEED 184
             I+DDDR V  FS++GG+HRL NY+SVT+VH    D  G   T V+ESYVVDVP GN +E+
Sbjct:   129 IMDDDRHVISFSVVGGDHRLMNYKSVTTVHESEEDSDGKKRTRVVESYVVDVPAGNDKEE 188

Query:   185 TRLFADTVVKLNLQKLVSVAES 206
             T  FADT+V+ NLQ L  +AE+
Sbjct:   189 TCSFADTIVRCNLQSLAKLAEN 210

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2153549 PYL5 "PYRABACTIN RESISTANCE 1-LIKE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 83/164 (50%), Positives = 115/164 (70%)

Query:    44 QSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMA 103
             + V   HT+ +  +QC S + Q I AP + VW++VRRFD P+ YK+FI+ C +     + 
Sbjct:    43 EHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLH 102

Query:   104 VGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGA 163
             VG  R+V V+SGLPA +STERL+ILD++R V  FS++GG+HRL+NYRSVT++H  + +G 
Sbjct:   103 VGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHASDDEG- 161

Query:   164 ICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ 207
               TVV+ESY+VDVP GNTEE+T  F DT+V+ NLQ L      Q
Sbjct:   162 --TVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLARSTNRQ 203

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0010427 "abscisic acid binding" evidence=IDA

TAIR|locus:2163731 RCAR3 "regulatory components of ABA receptor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 80/163 (49%), Positives = 114/163 (69%)

Query:    43 KQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTM 102
             ++ +   H ++L  NQCSS L + I AP  +VWS+VRRFDQPQ YK FI  C V  N  M
Sbjct:    16 REFIRRHHKHELVDNQCSSTLVKHINAPVHIVWSLVRRFDQPQKYKPFISRCVVKGN--M 73

Query:   103 AVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDG 162
              +G+ R+V+V SGLPA  STERL++LDD+  +    I+GG+HRL+NY S+ S+H    +G
Sbjct:    74 EIGTVREVDVKSGLPATRSTERLELLDDNEHILSIRIVGGDHRLKNYSSIISLHPETIEG 133

Query:   163 AICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
              I T+V+ES+VVDVPEGNT+++T  F + ++K NL+ L  ++E
Sbjct:   134 RIGTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 176

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0004872 "receptor activity" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

TAIR|locus:505006424 PYL7 "PYR1-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 84/162 (51%), Positives = 116/162 (71%)

Query:    44 QSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMA 103
             QS+   H +   +NQC+S+L + I+AP  +VWS+VRRFDQPQ YK FI  C+V  N    
Sbjct:    21 QSLRLRHLHHCRENQCTSVLVKYIQAPVHLVWSLVRRFDQPQKYKPFISRCTV--NGDPE 78

Query:   104 VGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGA 163
             +G  R+VNV SGLPA TSTERL+ LDD+  + G +IIGG+HRL+NY S+ +VH    DG 
Sbjct:    79 IGCLREVNVKSGLPATTSTERLEQLDDEEHILGINIIGGDHRLKNYSSILTVHPEMIDGR 138

Query:   164 ICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
               T+V+ES+VVDVP+GNT++DT  F ++++K NL+ L  V+E
Sbjct:   139 SGTMVMESFVVDVPQGNTKDDTCYFVESLIKCNLKSLACVSE 180

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

TAIR|locus:2035227 RCAR1 "regulatory component of ABA receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 81/165 (49%), Positives = 115/165 (69%)

Query:    41 ELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNF 100
             E  Q V   H +   +NQC+S L + I+AP  +VWS+VRRFDQPQ YK F+  C+V  + 
Sbjct:    16 ETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGD- 74

Query:   101 TMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNR 160
                +GS R+VNV SGLPA TSTERL++LDD+  + G  IIGG+HRL+NY S+ +VH    
Sbjct:    75 -PEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEII 133

Query:   161 DGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
             +G   T+V+ES+VVDVP+GNT+++T  F + +++ NL+ L  V+E
Sbjct:   134 EGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSE 178

GO:0005634 "nucleus" evidence=ISM

GO:0004872 "receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0010427 "abscisic acid binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49686	PYR1_ARATH	No assigned EC number	0.7401	0.8468	0.9267	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290191 hypothetical protein (203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	1e-25
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	4e-06
pfam10604	140	pfam10604, Polyketide_cyc2, Polyketide cyclase / d	9e-06
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	1e-04
pfam03364	125	pfam03364, Polyketide_cyc, Polyketide cyclase / de	0.003

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 96.2 bits (240), Expect = 1e-25
 Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 59  CSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA 118
               ++  I AP D VW+++  F     +   + SC +       VG+ R V +  G   
Sbjct: 1   AKVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGG-GPGVGAVRTVTLKDG--- 56

Query: 119 ATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE 178
            T  ERL  LDD  +   + I+ G   ++NY +   V     +G   T V  +   D PE
Sbjct: 57  GTVRERLLALDDAERRYSYRIVEGPLPVKNYVATIRVT---PEGDGGTRVTWTAEFDPPE 113

Query: 179 GNTEEDTRLFADTVVKLNLQKLVSVAE 205
           G T+E  R F   V +  L  L +  E
Sbjct: 114 GLTDELARAFLTGVYRAGLAALKAALE 140

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 89  HFIKSCSV--SDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRL 146
             IKS  +   D      GS + +    G       ER+D +D++ +   +++I G+   
Sbjct: 33  PVIKSVELLEGDG---GPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTVIEGDVLK 89

Query: 147 RNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKL 195
             Y+S      F      G +    +E Y         EE+ +   +  +K+
Sbjct: 90  DGYKSYKVEIKFVPKGDGGCVVKWTIE-YEKKGDAEPPEEEIKAGKEKALKM 140

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 10/140 (7%)

Query: 67  IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
           I AP + VW++V  F+    +   +    +     + V  T            T  E L 
Sbjct: 10  IAAPPEKVWALVSDFENWPRWHPGVLRVELEGGGPLGVVGTLRAG-----GGRTVREELV 64

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLES-YVVDVPEGNTEEDT 185
             D   +   + I+     + NY    +V      G    V     +    P G      
Sbjct: 65  EYDPAGRRLEYRIVEP-LGVTNYVGTWTVTP---AGGGTRVTWTGEFDPPGPLGLNGPAA 120

Query: 186 RLFADTVVKLNLQKLVSVAE 205
                  ++  L  L ++ E
Sbjct: 121 AKAVKGDIEAGLDNLKALLE 140

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily. Length = 140

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 84  PQTYKHFIKSCSV-SDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG 142
           P+   H I+   V    +    GS +              ER++  D+  +   +S++ G
Sbjct: 30  PKAIPHHIQGVEVHEGEWG-TGGSIKKWTYTEDGKPKVVKERIEADDEKNKTITYSVLEG 88

Query: 143 EHRLRNYRSVTSVHGFN---RDGAICTVVLE----SYVVDVPEGNTEEDTRLFAD 190
              L +Y+S  +          G+I    +E       V  PE   +   +L  D
Sbjct: 89  -DVLEDYKSFITTLQVIPKSNGGSIVKWTIEYEKIGDDVPEPEKYLKFVVKLTKD 142

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|217515 pfam03364, Polyketide_cyc, Polyketide cyclase / dehydrase and lipid transport

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 10/135 (7%)

Query: 67  IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
           + AP + VW++V   ++   Y  F+  C   +                GL  + +     
Sbjct: 1   VPAPAEQVWALVTDVER---YPEFLPWCKSVEVLDRDGSLADWRVAFGGLRRSFTARVT- 56

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTR 186
            L    ++    + G   RL                     V      +           
Sbjct: 57  -LQPPERIEMVLVDGDFKRLEGSWRFEP-----GGPGTRVKVTLELDFEFASPLPGALLG 110

Query: 187 LFADTVVKLNLQKLV 201
                V++  L+   
Sbjct: 111 FVFRRVLRTLLEAFR 125

This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. The family also includes proteins which are involved in the binding/transport of lipids. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	99.94
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	99.84
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.72
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.65
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.56
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.45
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.36
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.35
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.3
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.23
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.2
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.19
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.18
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.18
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.09
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.08
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	98.98
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	98.87
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	98.72
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	98.71
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	98.58
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	98.34
PRK10724	158	hypothetical protein; Provisional	98.22
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.18
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.11
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.07
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	97.82
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	97.79
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	97.75
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	97.72
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	97.67
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	97.55
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	97.53
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	97.46
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	97.46
COG5637	217	Predicted integral membrane protein [Function unkn	97.43
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	97.35
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	97.35
COG3832	149	Uncharacterized conserved protein [Function unknow	97.21
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	97.04
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	96.96
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	95.55
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	95.53
COG4276	153	Uncharacterized conserved protein [Function unknow	95.06
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	94.91
cd08905	209	START_STARD1-like Cholesterol-binding START domain	94.78
cd08874	205	START_STARD9-like C-terminal START domain of mamma	93.49
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	92.88
cd08906	209	START_STARD3-like Cholesterol-binding START domain	92.0
cd08871	222	START_STARD10-like Lipid-binding START domain of m	91.72
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	91.41
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	90.64
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	90.39
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	89.51
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	85.01
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	85.0
cd08913	240	START_STARD14-like Lipid-binding START domain of m	83.33
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	83.18
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	82.47
cd00177	193	START Lipid-binding START domain of mammalian STAR	82.07

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=99.94  E-value=3.1e-26  Score=184.54  Aligned_cols=126  Identities=16%  Similarity=0.228  Sum_probs=106.6

Q ss_pred             EeEEEecChHHHHHHhhcCCC--CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~--~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      ...+|+||+++||+++++|+.  ++.|+|+|++|++++|+ +++||||.|+|.+|++..+++|||+.+|+++|+|+|+|+
T Consensus         5 ~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~vv   83 (148)
T cd07816           5 HEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTVI   83 (148)
T ss_pred             EEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEEEE
Confidence            346799999999999999984  78999999999999997 799999999999887777999999999999999999999


Q ss_pred             eccc---CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC--HHHHHHHHHHH
Q 046151          141 GGEH---RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT--EEDTRLFADTV  192 (209)
Q Consensus       141 eG~~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~--~e~a~~~i~~v  192 (209)
                      +|++   ++++|+++++|.|.+++   +|++.|...|++.+++.  .+....++..+
T Consensus        84 eg~~~~~~~~~y~~t~~v~~~~~~---~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~  137 (148)
T cd07816          84 EGDVLKDGYKSYKVEIKFVPKGDG---GCVVKWTIEYEKKGDAEPPEEEIKAGKEKA  137 (148)
T ss_pred             ecccccCceEEEEEEEEEEECCCC---CEEEEEEEEEEECCCCCCCHHHHHhHHHHH
Confidence            9998   49999999999987432   48999999998766643  33333444433

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.84  E-value=5.8e-20  Score=149.77  Aligned_cols=115  Identities=17%  Similarity=0.300  Sum_probs=92.9

Q ss_pred             eEEEecChHHHHHHhhcCCC--CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           64 AQRIRAPNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~--~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      ...+++||+++|++++..+.  |+..|+.|+++++++||+|..||||.|+|..|+|..+++||++.+|+++++++|++++
T Consensus         9 E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y~viE   88 (151)
T PF00407_consen    9 EVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITYTVIE   88 (151)
T ss_dssp             EEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEEEEEe
Confidence            45789999999999997444  8999999999999999854455999999999999999999999999999999999999


Q ss_pred             ccc--CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC
Q 046151          142 GEH--RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT  181 (209)
Q Consensus       142 G~~--p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~  181 (209)
                      |++  .+..|.+++++.|.++++   |++-|...++...++.
T Consensus        89 Gd~l~~~~~~~~~~~~~~~~~g~---~v~k~t~~Ye~~~~~~  127 (151)
T PF00407_consen   89 GDVLGDYKSFKSTIQKIPKGDGG---CVVKWTIEYEKKGEDV  127 (151)
T ss_dssp             ETTGTTTEEEEEEEEEEEETTSC---EEEEEEEEEEESSTSC
T ss_pred             ccccccEEEEEEEEEecCCCCCc---eEEEEEEEEEecCCCC
Confidence            996  344556666666655443   7888888887554444

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.72  E-value=6e-16  Score=118.21  Aligned_cols=135  Identities=30%  Similarity=0.426  Sum_probs=115.7

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      +.+|+||+++||+++.|+.+.+.|.|.++++++.++.+ ++|++|.+.+..|   ..+++++..+|+.++.+.|++.+|+
T Consensus         6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~-~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~~~~~   81 (140)
T cd07821           6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGP-GVGAVRTVTLKDG---GTVRERLLALDDAERRYSYRIVEGP   81 (140)
T ss_pred             EEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCC-CCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEEecCCC
Confidence            46899999999999999999999999999999987653 6899999999765   5788999999999889999999887


Q ss_pred             cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      .++.++..+.++.+.+++   +|.+.+...++++.+.-......++...+..+|++|++.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~---~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~  140 (140)
T cd07821          82 LPVKNYVATIRVTPEGDG---GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE  140 (140)
T ss_pred             CCcccceEEEEEEECCCC---ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence            888889999999986533   37888888888665444566788999999999999999875

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.65  E-value=3.2e-14  Score=108.72  Aligned_cols=135  Identities=19%  Similarity=0.205  Sum_probs=109.2

Q ss_pred             eeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEE
Q 046151           60 SSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSI  139 (209)
Q Consensus        60 ~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~i  139 (209)
                      .-+.++.|+||+++||.++.||.+.+.|.|.+.+|++.+++  +.|..+.+... |.  ..+++++..+|++++.+.|++
T Consensus         3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~-g~--~~~~~~i~~~~~~~~~~~~~~   77 (139)
T PF10604_consen    3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGG--GPGTERTVRVA-GR--GTVREEITEYDPEPRRITWRF   77 (139)
T ss_dssp             EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEEC--STEEEEEEEEC-SC--SEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcccc--ccceeEEEEec-cc--cceeEEEEEecCCCcEEEEEE
Confidence            34556789999999999999999999999999999998633  45666777753 32  478999999998899999999


Q ss_pred             eecccCccceEEEEEEEeecCCCCceEEEEEEeeecC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          140 IGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDV-PEGNT-EEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       140 ieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~-P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      .  ..++.++..+.++.|.+ +|   |.+.|...+++ +.+.- ...++..+...++..|++||+.+|
T Consensus        78 ~--~~~~~~~~~~~~~~~~~-~g---t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E  139 (139)
T PF10604_consen   78 V--PSGFTNGTGRWRFEPVG-DG---TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE  139 (139)
T ss_dssp             E--SSSSCEEEEEEEEEEET-TT---EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             E--ecceeEEEEEEEEEEcC-CC---EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence            6  56788899999999875 33   77888887774 33443 456789999999999999999987

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.56  E-value=1.9e-13  Score=106.64  Aligned_cols=136  Identities=15%  Similarity=0.178  Sum_probs=102.4

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCc-----ceEEEEEeecCCCcceeeEeeceecCCCCEEEEE
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAV-----GSTRDVNVISGLPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~v-----GsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      +..|+||+++||+++.||++.+.|.|.+++|+++++.+++.     |..+.+...  .+ +.++.++...|+.++.++|+
T Consensus         4 ~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~~~i~~~   80 (144)
T cd08866           4 RVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFK--FE-ARVVLELREREEFPRELDFE   80 (144)
T ss_pred             EEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeee--ee-EEEEEEEEEecCCCceEEEE
Confidence            46799999999999999999999999999999886542111     112222111  11 34566777778778999999


Q ss_pred             EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +++|+  +..|..+.++.|.++++  +|.+.+...+++..+--...+..++...+...|++|++.+|+
T Consensus        81 ~~~g~--~~~~~g~w~~~~~~~~~--~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~  144 (144)
T cd08866          81 MVEGD--FKRFEGSWRLEPLADGG--GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES  144 (144)
T ss_pred             EcCCc--hhceEEEEEEEECCCCC--eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99885  67889999999876423  488888888875444445667889999999999999999985

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.45  E-value=7.2e-12  Score=95.33  Aligned_cols=135  Identities=11%  Similarity=0.023  Sum_probs=100.0

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      ++.|+||+++||+++.||.+.+.|.|.+.+++..++...++|+...+.+..++..-.+++++..+|+ ++.+.|...+|+
T Consensus         4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~~~~~~   82 (140)
T cd08865           4 SIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFRGSSGP   82 (140)
T ss_pred             EEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEEecCCC
Confidence            4689999999999999999999999999999987654457899988876533211256889998885 578999987664


Q ss_pred             cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG--NTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g--~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +   .+..+..+.+.+ +   +|.+.+...++.+..  .-.......+...++..|++||+.+|.
T Consensus        83 ~---~~~~~~~~~~~~-~---~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~  140 (140)
T cd08865          83 F---PYEDTYTFEPVG-G---GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA  140 (140)
T ss_pred             c---ceEEEEEEEEcC-C---ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence            3   367778888753 2   377777766664211  112335667778889999999999884

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.36  E-value=2.4e-11  Score=94.49  Aligned_cols=136  Identities=13%  Similarity=0.020  Sum_probs=98.5

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEee-cCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVI-SGLPAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~-~G~p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      +.+|+||+++||+++.||.+.+.|+|. .+++...++ ++...+|.+... .|.  ....+.+..+|++.+.+.|..+++
T Consensus         4 s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~-~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~~~~~   79 (142)
T cd08861           4 SVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELD-GGVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVFRQEEP   79 (142)
T ss_pred             EEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEc-CCEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEEEEeeC
Confidence            357999999999999999998889998 555544432 122245655554 232  222345556888899999999886


Q ss_pred             ccCccceEEEEEEEeecCCCCceEEEEEEeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVP--EGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P--~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +.++..+....++.|.+++   +|.|.+...++++  .+..+..+..++...+..+|++||+.+|.
T Consensus        80 ~~~~~~~~g~w~~~~~~~~---~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  142 (142)
T cd08861          80 PPPVASMSGEWRFEPLGGG---GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER  142 (142)
T ss_pred             CCChhhheeEEEEEECCCC---cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence            6678889988899986533   3777777776643  23455666888999999999999999984

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.35  E-value=7.3e-11  Score=90.57  Aligned_cols=132  Identities=14%  Similarity=0.040  Sum_probs=97.4

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      ++.|+||+++||+++.||.+.+.|.|.+.+|++.++.+ ++|+...++...+   ..+..++..+++.+ .|+|+...  
T Consensus         6 ~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~-~~G~~~~~~~~~~---~~~~~~i~~~~p~~-~~~~~~~~--   78 (138)
T cd08862           6 TIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPP-AVGSSFKMKPPGL---VRSTFTVTELRPGH-SFTWTGPA--   78 (138)
T ss_pred             EEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCC-CCCcEEEEecCCC---CceEEEEEEecCCC-EEEEEecC--
Confidence            46899999999999999999999999999999986532 6787766765432   35778888888654 57777543  


Q ss_pred             cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG-NTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g-~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                       +...+..+.++.+.+++   +|.+.+.+.+..|.+ .........+...++..|++||+.+|.
T Consensus        79 -~~~~~~~~~~~~~~~~~---~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  138 (138)
T cd08862          79 -PGISAVHRHEFEAKPDG---GVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ  138 (138)
T ss_pred             -CCEEEEEEEEEEEcCCC---cEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence             23455667777775422   376777777764432 224456788999999999999999884

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.30  E-value=2.6e-10  Score=87.51  Aligned_cols=132  Identities=14%  Similarity=0.041  Sum_probs=86.8

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceec-CCCCEEEEEEeec
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILD-DDRQVTGFSIIGG  142 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lD-d~~~~~sY~iieG  142 (209)
                      +..|+||+++||+++.|+.+.+.|.|.+.+|++.++.+++.+....+.+..+   ....+-+..++ +..+.++|+..+|
T Consensus         7 s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~   83 (140)
T cd07819           7 EFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY---GIKDTYALEYTWDGAGSVSWTLVEG   83 (140)
T ss_pred             EEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeee---eEEEEEEEEEEEcCCCcEEEEEecc
Confidence            3579999999999999999999999999999996543233333444554322   11112222222 2267799999887


Q ss_pred             ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046151          143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSV  203 (209)
Q Consensus       143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~  203 (209)
                      . +...+.....+.|.++    +|.+.+...+++.-+.-.-....+...+...-+++|++.
T Consensus        84 ~-~~~~~~~~~~~~~~~~----~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  139 (140)
T cd07819          84 E-GNRSQEGSYTLTPKGD----GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR  139 (140)
T ss_pred             c-ceeEEEEEEEEEECCC----CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence            5 5777888888887643    377877777653222223334566666677777777764

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.23  E-value=7.8e-10  Score=84.34  Aligned_cols=135  Identities=13%  Similarity=0.060  Sum_probs=90.5

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCC-CcceeeEeeceecCCCCEEEEEEeec
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGL-PAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~-p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      +++|+||+++||+++.|+.+.+.|.+.+..++...   ..+|+...+.+..++ ......+++..+|+. +.+.|+...+
T Consensus         5 ~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~---~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~~~~~~   80 (141)
T cd07822           5 EIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS---LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAWRGGLP   80 (141)
T ss_pred             EEEecCCHHHHHHHHhccccccccChhheeEeccc---cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEEEecCC
Confidence            46799999999999999999999999887776542   257887777765431 224678889999985 5788998776


Q ss_pred             ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG-NTEEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g-~~~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      +.....+..+..+.+..++   +|.+.+.+.+.-+.. .........+...++..|+.||+.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~---~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E  141 (141)
T cd07822          81 FPGLLDGEHSFELEPLGDG---GTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE  141 (141)
T ss_pred             CCcEeeEEEEEEEEEcCCC---cEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence            5543345566677774333   366655555432211 11222345666667777777877765

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.20  E-value=1.4e-09  Score=85.44  Aligned_cols=138  Identities=12%  Similarity=-0.015  Sum_probs=95.9

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEE---c-cCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSV---S-DNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~---~-eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      ..++.|+||+++||.++.|+.+.+.|.|.+..+..   . .+...++|+...++...+  .+....++..+++ ++.+.|
T Consensus         5 ~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~~v~~~~p-~~~i~~   81 (150)
T cd07818           5 ERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDK--VGEGEMEITESVP-NERIEY   81 (150)
T ss_pred             EEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCc--ccceEEEEEecCC-CcEEEE
Confidence            34568999999999999999999999997765432   1 122346888877765442  1244566777765 567999


Q ss_pred             EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN----TEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~----~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      ++..++.....+..+..+.+. ++   +|.+.+.+.++.|-+-    ........+...+..+|++||+.+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-~~---gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~  150 (150)
T cd07818          82 ELRFIKPFEATNDVEFTLEPV-GG---GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK  150 (150)
T ss_pred             EEEecCCccccceEEEEEEEc-CC---ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            987532211356778888876 23   3888888888755332    22344677788889999999999986

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.19  E-value=9.4e-10  Score=84.48  Aligned_cols=130  Identities=12%  Similarity=0.133  Sum_probs=90.1

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      +++|+||+++||+++.|+.+.+.|.|.+.++++.++.    +....+.+..|... ..+.+...+++ ++.+.|....|.
T Consensus         5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~g~~~-~~~~~v~~~~~-~~~i~~~~~~~~   78 (139)
T cd07817           5 SITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT----RSHWKAKGPAGLSV-EWDAEITEQVP-NERIAWRSVEGA   78 (139)
T ss_pred             EEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC----ceEEEEecCCCCcE-EEEEEEeccCC-CCEEEEEECCCC
Confidence            3579999999999999999999999999999987541    22233333224322 34455555555 445899887664


Q ss_pred             cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHh
Q 046151          144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTE----EDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~----e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      +   .+..+.++.+..+ +  +|.+.....++++.+...    .....++...++.+|++||+.+|
T Consensus        79 ~---~~~~~~~f~~~~~-~--~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE  138 (139)
T cd07817          79 D---PNAGSVRFRPAPG-R--GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE  138 (139)
T ss_pred             C---CcceEEEEEECCC-C--CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence            3   4567778887543 2  377777777775543322    33467788889999999999998

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.18  E-value=5.7e-10  Score=86.98  Aligned_cols=133  Identities=11%  Similarity=0.092  Sum_probs=97.8

Q ss_pred             EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeeccc
Q 046151           65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEH  144 (209)
Q Consensus        65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~  144 (209)
                      ..|+||+++||+++.|+.+.+.|.|.+.+|++.++.  +.+....+++.-++-......++. +++ +++++++.++|  
T Consensus         5 ~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~g--   78 (138)
T cd07813           5 RLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERD--EDELEAELTVGFGGIRESFTSRVT-LVP-PESIEAELVDG--   78 (138)
T ss_pred             EEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcC--CCEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEecCC--
Confidence            579999999999999999999999999999998765  234444455543321123344444 565 66889998888  


Q ss_pred             CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          145 RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       145 p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +++.+....++.|.+++   +|.+.....++++-+--...+..++....+..|+++++.+++
T Consensus        79 ~~~~~~g~w~~~p~~~~---~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~  137 (138)
T cd07813          79 PFKHLEGEWRFKPLGEN---ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ  137 (138)
T ss_pred             ChhhceeEEEEEECCCC---CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46778888899987643   378888888875422223445788888899999999998875

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.18  E-value=3.1e-09  Score=78.02  Aligned_cols=134  Identities=16%  Similarity=0.052  Sum_probs=96.2

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      ....|+||+++||+++.|+.+...|.|.+.++++.++.....|....+.+..+. ......++..+++ +..++|++..+
T Consensus         3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~~~~   80 (141)
T cd07812           3 ASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRVTGG   80 (141)
T ss_pred             EEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEEecC
Confidence            346799999999999999999999999999999987655567777777664121 1356788888887 66889999877


Q ss_pred             ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 046151          143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN---TEEDTRLFADTVVKLNLQKLVS  202 (209)
Q Consensus       143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~---~~e~a~~~i~~v~k~gL~~Lk~  202 (209)
                      +.+ ..+..+..+.+..+   .+|.+.+...++.+...   .......++...+...|++|++
T Consensus        81 ~~~-~~~~~~~~~~~~~~---~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T cd07812          81 GGG-VDGTGEWRLEPEGD---GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA  139 (141)
T ss_pred             CCC-cceeEEEEEEECCC---CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence            664 56677778887543   13778888888765543   2344455555555666666654

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.09  E-value=3.5e-09  Score=81.08  Aligned_cols=135  Identities=10%  Similarity=-0.007  Sum_probs=89.6

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      .+.+|+||+++||+++.|+.+.+.|.|.+..+.+...   .-|+.+......++-...++.++..+|+. +.+.|+...+
T Consensus         4 ~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~---~Gg~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~~~~   79 (139)
T cd07814           4 IEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLR---VGGRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTWAFS   79 (139)
T ss_pred             EEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEccc---CCceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEeccc
Confidence            3468999999999999999998899876333333211   11666655433221123578899999966 6799998876


Q ss_pred             cc-CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          143 EH-RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       143 ~~-p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +. +...+.....+.+.+ +   +|.+.+...+..+.+. .......+...+..-|++||+.+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~-~---~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~E~  139 (139)
T cd07814          80 DETPGPETTVTVTLEETG-G---GTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALLEK  139 (139)
T ss_pred             CCCCCCceEEEEEEEECC-C---CEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence            53 344556666777754 3   3777776665443222 3344556666788889999999985

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.08  E-value=5.3e-09  Score=84.43  Aligned_cols=138  Identities=12%  Similarity=0.041  Sum_probs=93.3

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEe-ecCCCcceeeEeeceecCCCCEEEEE-Ee
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNV-ISGLPAATSTERLDILDDDRQVTGFS-II  140 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~-~~G~p~~~~~ErLd~lDd~~~~~sY~-ii  140 (209)
                      .+++|+|||++||.+|.|+.+-+.|.|.++++++.+.++.+.|+--.+.. ..|.+..+..|+.  +|...+.+.++ ..
T Consensus         5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~--~~~~~~~i~~~~~~   82 (146)
T cd08860           5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERT--LDPVNRTVRARRVE   82 (146)
T ss_pred             eEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEE--ecCCCcEEEEEEec
Confidence            34689999999999999999999999999999998654334553221222 2333223333433  68888888885 22


Q ss_pred             ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE--GNTEEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~--g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      .  .|+..-...-++.|.+ +|   |.|.....+..+.  +....-..++++..+...|++||+.+|+.|
T Consensus        83 ~--~p~~~m~~~W~f~~~~-~g---T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~  146 (146)
T cd08860          83 T--GPFAYMNIRWEYTEVP-EG---TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA  146 (146)
T ss_pred             C--CCcceeeeeEEEEECC-CC---EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence            3  3555555555778763 33   6665555554332  333445678899999999999999999854

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.98  E-value=1.8e-08  Score=78.44  Aligned_cols=138  Identities=17%  Similarity=0.186  Sum_probs=85.1

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCC-CCCcceEEEEEeec-CCCcceeeEeeceecCCCCEEEEEEe
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNF-TMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd-~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      ++++|+||+++||+++.||...+.|.|....+....++ +..+|+...+.... |++ ..+..++..+++.. .+.|+..
T Consensus         4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l~~~~~   81 (144)
T cd07825           4 VSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LIAWRPG   81 (144)
T ss_pred             EEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EEEEEcc
Confidence            45689999999999999999998998743222222222 34789888777654 333 34566777777755 4888864


Q ss_pred             ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHh
Q 046151          141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTE-EDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~-e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      -...+...-..+.++.+..+ +  +|.+.....+..+..-.. .........-++..|++|++.+|
T Consensus        82 ~~~~~~~~~~~~~~l~~~~~-g--~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~  144 (144)
T cd07825          82 PAGQEPGGHRWRWELEPIGP-G--RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLAE  144 (144)
T ss_pred             CCCCCCCceeEEEEEEECCC-C--cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence            22222333344566776543 2  366766565543322100 11223356668899999999886

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.87  E-value=1.4e-07  Score=74.60  Aligned_cols=130  Identities=15%  Similarity=0.104  Sum_probs=81.3

Q ss_pred             EEEecChHHHHHHhhcCCCCCccccccceeEEcc-CCCCCcceEEEEEeecCCCcc-eeeEeeceecCCCCEEEEEEeec
Q 046151           65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSD-NFTMAVGSTRDVNVISGLPAA-TSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~e-Gd~g~vGsvR~lt~~~G~p~~-~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      .+|+||+++||+++.|+...+.|.|.+.++++.+ +.+.++|+.-+.......|.. .++-++..+| ..+.+.|+. .|
T Consensus         7 ~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~~~~~-~g   84 (146)
T cd07824           7 WRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIE-PLSLLEVRA-SG   84 (146)
T ss_pred             EEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeec-CCcEEEEEE-EE
Confidence            5799999999999999999999999999999886 333477777555433222321 3344445544 466788885 56


Q ss_pred             ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 046151          143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE-------GNTEEDTRLFADTVVKLNLQKLVSV  203 (209)
Q Consensus       143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~-------g~~~e~a~~~i~~v~k~gL~~Lk~~  203 (209)
                      ++.   ...+.++.+.+ +   +|.+.....++.+-       +.-..........++...+++||+.
T Consensus        85 ~~~---~~~~~~~~~~~-~---gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~  145 (146)
T cd07824          85 DLE---GVGRWTLAPDG-S---GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR  145 (146)
T ss_pred             eee---EEEEEEEEEcC-C---CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence            532   35666788742 2   36676666665432       1122223444555555556666553

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=98.72  E-value=2e-07  Score=71.42  Aligned_cols=129  Identities=20%  Similarity=0.246  Sum_probs=84.4

Q ss_pred             EecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccCc
Q 046151           67 IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRL  146 (209)
Q Consensus        67 I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p~  146 (209)
                      |+||+++||+++.|+.+.+.|.|.+++|++.+.+++  +..-.+.+..++.......+........  +.+..++|+  +
T Consensus         1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~--~   74 (130)
T PF03364_consen    1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD--GMRARWEVKFGGIKRSWTSRVTEDPPER--IRFEQISGP--F   74 (130)
T ss_dssp             ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC--EEEEEEEECTTTTCEEEEEEEEEECTTT--EEEESSETT--E
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC--eEEEEEEEecCCEEEEEEEEEEEEEeee--eeeeecCCC--c
Confidence            789999999999999999999999999999876522  2222334433322123445554444444  778877774  6


Q ss_pred             cceEEEEEEEeecC-CCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046151          147 RNYRSVTSVHGFNR-DGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV  201 (209)
Q Consensus       147 ~~Y~sti~V~~~~~-~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk  201 (209)
                      +.+...-++.+..+ +|+..|.+.-.+.++++-+--..-+..++....+..|++|+
T Consensus        75 ~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (130)
T PF03364_consen   75 KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR  130 (130)
T ss_dssp             EEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence            88888889998763 11223555555555544444455567788888888877764

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=98.71  E-value=4e-07  Score=70.05  Aligned_cols=130  Identities=18%  Similarity=0.102  Sum_probs=83.6

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc-ee--eEeeceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA-TS--TERLDILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~-~~--~ErLd~lDd~~~~~sY~ii  140 (209)
                      +..|+||+++||+++.|+.+...|.|.+.+++..+++  .......+.+  | |.+ ..  +-++..+|+. +.+.++..
T Consensus         6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~-~~~~~~~~   79 (144)
T cd05018           6 EFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPN--EYEATVKLKV--G-PVKGTFKGKVELSDLDPP-ESYTITGE   79 (144)
T ss_pred             EEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCC--eEEEEEEEEE--c-cEEEEEEEEEEEEecCCC-cEEEEEEE
Confidence            3679999999999999999999999999999887542  2222222222  2 221 22  3444444544 56777765


Q ss_pred             e-cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC----CHHHHHHHHHHHHHHHHHHHHHHH
Q 046151          141 G-GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN----TEEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       141 e-G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~----~~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      . +......+..+.++.+. ++   +|.+.+...++.+ +.    -......++..++..=+++||+.+
T Consensus        80 ~~~~~~~~~~~~~~~l~~~-~~---gT~v~~~~~~~~~-g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~  143 (144)
T cd05018          80 GKGGAGFVKGTARVTLEPD-GG---GTRLTYTADAQVG-GKLAQLGSRLIDGAARKLINQFFENLASKI  143 (144)
T ss_pred             EcCCCceEEEEEEEEEEec-CC---cEEEEEEEEEEEc-cChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4 22335578888888875 33   3778887777733 32    233345666777777777787765

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.58  E-value=3.4e-06  Score=65.99  Aligned_cols=108  Identities=15%  Similarity=0.119  Sum_probs=77.8

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCC--CcceEEEEEeecCC-CcceeeEeeceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTM--AVGSTRDVNVISGL-PAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g--~vGsvR~lt~~~G~-p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      +++|+||+++||+.+.|+.+++.|.|.+.++++.+..++  .+|+.-.+.+..++ +. ..+-++..+++ ++.+.+..+
T Consensus         4 s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p-~~~f~~~~~   81 (137)
T cd07820           4 STVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEP-PRRFVDEQV   81 (137)
T ss_pred             EEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcC-CCeEEEEec
Confidence            467999999999999999999999999999999743222  45777777775442 22 33455555664 456888877


Q ss_pred             ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC
Q 046151          141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG  179 (209)
Q Consensus       141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g  179 (209)
                      .|+  +..+.-+..+.+.+ +   +|.+.....++.|-+
T Consensus        82 ~G~--~~~w~h~~~f~~~~-~---gT~vt~~v~~~~p~g  114 (137)
T cd07820          82 SGP--FRSWRHTHRFEAIG-G---GTLMTDRVEYRLPLG  114 (137)
T ss_pred             cCC--chhCEEEEEEEECC-C---ceEEEEEEEEeCCch
Confidence            774  55677777888753 2   488888888887643

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=98.34  E-value=2e-05  Score=62.24  Aligned_cols=134  Identities=15%  Similarity=0.096  Sum_probs=81.7

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc-eee--EeeceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA-TST--ERLDILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~-~~~--ErLd~lDd~~~~~sY~ii  140 (209)
                      +.+|+||+++||.++.|+.....|.|.+++.+..+++  .  ..-.++++-| |.. ..+  =++..++...+++.+..-
T Consensus         4 ~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~--~--~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (146)
T cd07823           4 EFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDD--E--YKGTVKVKLG-PISASFKGTARLLEDDEAARRAVLEAT   78 (146)
T ss_pred             eEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCC--e--EEEEEEEEEc-cEEEEEEEEEEEEeccCCCcEEEEEEE
Confidence            3579999999999999999999999999888876432  2  2222333222 211 221  145555557888888765


Q ss_pred             ecccC--cc-ceEEEEEEEeecCCCCceEEEEEEeeecC--C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          141 GGEHR--LR-NYRSVTSVHGFNRDGAICTVVLESYVVDV--P-EGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       141 eG~~p--~~-~Y~sti~V~~~~~~g~~~T~v~~s~~~d~--P-~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +.+..  .. ....++++.|  .++  +|.+.|...++.  | ..--........+.++..=+++|++.+|.
T Consensus        79 g~~~~~~g~~~~~~~~~l~~--~~~--gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e~  146 (146)
T cd07823          79 GKDARGQGTAEATVTLRLSP--AGG--GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLAA  146 (146)
T ss_pred             EecCCCcceEEEEEEEEEEe--cCC--cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            42111  11 2344556665  232  477877776542  1 12233445667777777788888888774

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PRK10724 hypothetical protein; Provisional

Probab=98.22  E-value=3.1e-05  Score=63.61  Aligned_cols=134  Identities=10%  Similarity=0.036  Sum_probs=86.6

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      +..|++|+++||++|.|..+.+.|.|.++++++.+-.++  +-+..+++.-++-..+.+.|... ++ ++++.+..++| 
T Consensus        20 ~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~--~~~a~l~v~~~g~~~~f~srv~~-~~-~~~I~~~~~~G-   94 (158)
T PRK10724         20 TALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG--QMTAAVDVSKAGISKTFTTRNQL-TS-NQSILMQLVDG-   94 (158)
T ss_pred             EEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC--EEEEEEEEeeCCccEEEEEEEEe-cC-CCEEEEEecCC-
Confidence            367999999999999999998899999999999865322  23444554333222334444443 43 34799999998 


Q ss_pred             cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                       |++.+...=+++|.++++   |.|.-...|+.+-.--+..+..+.+.+.+.=+++..+.+++
T Consensus        95 -pF~~l~g~W~f~p~~~~~---t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~  153 (158)
T PRK10724         95 -PFKKLIGGWKFTPLSQEA---CRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKE  153 (158)
T ss_pred             -ChhhccceEEEEECCCCC---EEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             477788777899876433   66766666654333323334455555555555555555544

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.18  E-value=4.8e-05  Score=61.29  Aligned_cols=127  Identities=12%  Similarity=0.009  Sum_probs=80.0

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      -.+.++|+||+++||+++.|+...+.|.+..   .   .+ -.+|...++.+....+ ....-++..+|+. +.+.|+..
T Consensus        13 i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~---~~-~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~-~~l~~~~~   83 (157)
T cd08899          13 LRFERLLPAPIEDVWAALTDPERLARWFAPG---T---GD-LRVGGRVEFVMDDEEG-PNATGTILACEPP-RLLAFTWG   83 (157)
T ss_pred             EEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---C---CC-cccCceEEEEecCCCC-CccceEEEEEcCC-cEEEEEec
Confidence            4566789999999999999999988898722   1   21 2566666666543111 2456777777776 46778876


Q ss_pred             ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      .++   .....++++.+.+ +   +|.+.-...+. + +.   .....+..-....|++||+.+|+..
T Consensus        84 ~~~---~~~~~~~~l~~~~-~---gT~v~~~~~~~-~-~~---~~~~~~~~GW~~~L~~Lk~~~e~~~  139 (157)
T cd08899          84 EGG---GESEVRFELAPEG-D---GTRLTLTHRLL-D-ER---FGAGAVGAGWHLCLDVLEAALEGGP  139 (157)
T ss_pred             CCC---CCceEEEEEEEcC-C---CEEEEEEEecc-C-ch---hhhhhhcccHHHHHHHHHHHHcCCC
Confidence            544   2233455666532 2   25443333321 1 21   2445566668888999999999854

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.11  E-value=0.00017  Score=55.04  Aligned_cols=129  Identities=14%  Similarity=0.011  Sum_probs=72.2

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      +++.|+||+++||+++-|+...+.|.+..   .. .++ -.+|..=.+....... ..+.=++..++ .++.+.|+...+
T Consensus         4 ~~~~i~ap~e~Vw~~~td~~~~~~W~~~~---~~-~~~-~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~~~~~~   76 (136)
T cd08893           4 YVTYIRATPEKVWQALTDPEFTRQYWGGT---TV-ESD-WKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVHTWRAV   76 (136)
T ss_pred             EEEEecCCHHHHHHHHcCchhhhheeccc---cc-ccC-CcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEEEEecC
Confidence            45789999999999999999988886542   12 222 2455433344332101 12344566666 455566776532


Q ss_pred             cc----CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          143 EH----RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       143 ~~----p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      ..    +.....-++.+.+.+  +  +|.+.-.... .+++.   .....+...+...|++||+.+|+
T Consensus        77 ~~~~~~~~~~~~v~~~l~~~~--~--~t~l~~~~~~-~~~~~---~~~~~~~~gw~~~l~~Lk~~~e~  136 (136)
T cd08893          77 WDPEMAAEPPSRVTFEIEPVG--D--VVKLTVTHDG-FPPGS---PTLEGVSGGWPAILSSLKTLLET  136 (136)
T ss_pred             CCcccCCCCCEEEEEEEEecC--C--cEEEEEEecC-CCCch---hHHHhhhcCHHHHHHHHHHHhcC
Confidence            22    222344455666542  2  2544333332 22221   23445555677789999999884

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.07  E-value=0.00014  Score=56.19  Aligned_cols=132  Identities=11%  Similarity=0.004  Sum_probs=72.4

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      +++|+||+++||+++.++...+.|.+... +.+..|. +..|   .+.+.++ ......=++..+++.+ .+.|+.....
T Consensus         6 ~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~-~~~g---~~~~~~~-~~~~~~~~i~~~~p~~-~l~~~~~~~~   78 (145)
T cd08898           6 TILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGE-GATG---EITYPGY-EHGVFPVTVVEVDPPR-RFSFRWHPPA   78 (145)
T ss_pred             EEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCC-ccee---EEecCCC-CccceEEEEEEeCCCc-EEEEEecCCC
Confidence            36799999999999999999888887543 2222221 1122   2333222 1123344566666544 4667764322


Q ss_pred             ----c---CccceEEEEEEEeecCCCCceEEEEEEeeecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          144 ----H---RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG-NTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       144 ----~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g-~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                          .   .......++++.+.. +   +|.+...-......+ +..+.....+..-...-|++||+.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~-~---gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~  145 (145)
T cd08898          79 IDPGEDYSAEPSTLVEFTLEPIA-G---GTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA  145 (145)
T ss_pred             cccccccCCCCceEEEEEEEecC-C---cEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence                1   122234555666643 2   365544433211222 122234455666788889999998874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=97.82  E-value=0.00024  Score=58.26  Aligned_cols=103  Identities=18%  Similarity=0.130  Sum_probs=66.3

Q ss_pred             EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCc-cee--eEeeceecCCCCEEEEEEee
Q 046151           65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA-ATS--TERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~-~~~--~ErLd~lDd~~~~~sY~iie  141 (209)
                      ..|+||+++||+.+.|+.......|.++|++.. |+  +-=+  .+.++-| |. +++  +=++..+|+..++|+.+.-+
T Consensus         7 f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~-g~--e~~~--~v~l~ig-~l~~~~~g~~~~~~v~~~~~~~~i~g~G   80 (146)
T COG3427           7 FRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN-GD--EYTA--KVKLKIG-PLKGTFSGRVRFVNVDEPPRSITINGSG   80 (146)
T ss_pred             EEecCCHHHHHHHhcCHHHHHhhcCCcceeeec-CC--eEEE--EEEEeec-ceeEEEEEEEEEccccCCCcEEEEEeec
Confidence            479999999999999999999999999999986 33  2111  2222222 22 233  45566677888888888765


Q ss_pred             cccCccceEEEEEEEeecCCCCceEEEEEEeeecC
Q 046151          142 GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDV  176 (209)
Q Consensus       142 G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~  176 (209)
                      |-. -..-.+++.+.-.+.+.  +|++-|....+.
T Consensus        81 ~~~-~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~  112 (146)
T COG3427          81 GGA-AGFADGTVDVQLEPSGE--GTRVNWFADANV  112 (146)
T ss_pred             ccc-cceeeeeeEEEEEEcCC--CcEEEEEEEccc
Confidence            332 22334444443333332  388999888763

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.79  E-value=0.00069  Score=53.10  Aligned_cols=131  Identities=11%  Similarity=0.057  Sum_probs=71.2

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcccc--cc--ceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKH--FI--KSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p--~V--~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      .+++.|+||+++||.++-+-..++.|..  .+  ..+.+   + ..+|..-.+.+.  +|.. -...=+..++++.+ .+
T Consensus         3 ~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~---d-~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p~~-~l   76 (139)
T cd08894           3 VTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEF---D-LRPGGRWRFVMHGPDGTD-YPNRIVFLEIEPPE-RI   76 (139)
T ss_pred             EEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEE---E-ecCCCEEEEEEECCCCCE-ecceEEEEEEcCCC-EE
Confidence            4678899999999999998777666642  11  12222   1 244544333332  2211 11233566777655 46


Q ss_pred             EEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          136 GFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       136 sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      .|+...++.   ....++++.+.. +   +|.+.-...+. +++.-++.+...+.......|++|++.+|+
T Consensus        77 ~~t~~~~~~---~~~v~~~~~~~~-~---gT~ltl~~~~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~  139 (139)
T cd08894          77 VYDHGSGPP---RFRLTVTFEEQG-G---KTRLTWRQVFP-TAAERCEKIKFGAVEGNEQTLDRLAAYLAR  139 (139)
T ss_pred             EEEeccCCC---cEEEEEEEEECC-C---CEEEEEEEEcC-CHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence            677643311   233455666542 3   25554334432 111112223455677788889999998874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=97.75  E-value=0.0036  Score=51.53  Aligned_cols=136  Identities=11%  Similarity=0.028  Sum_probs=78.5

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCc---ceeeEeeceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA---ATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~---~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      ..+|++|+++||+++.|.+..+.|-|.+.++++.+..+. ---+-.+.+....|+   ..+..+--..+.++..+...+.
T Consensus        46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~-~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~  124 (195)
T cd08876          46 VAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDD-NERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLE  124 (195)
T ss_pred             EEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCC-CcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEEEee
Confidence            356999999999999999998899999999999875421 122333333333332   1222211122322344444444


Q ss_pred             eccc--C-------ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Q 046151          141 GGEH--R-------LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       141 eG~~--p-------~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      ..+.  |       +..+.+...+++..++   +|.+.....+|+ .|.- .-....++...+..-|++|++.+
T Consensus       125 s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~---~t~vt~~~~~dp-~g~iP~~lv~~~~~~~~~~~l~~l~~~~  194 (195)
T cd08876         125 AAPEALPEQKGYVRIKTVEGQWTFTPLGNG---KTRVTYQAYADP-GGSIPGWLANAFAKDAPYNTLENLRKQL  194 (195)
T ss_pred             cCCccCCCCCCeEEceeceeeEEEEECCCC---eEEEEEEEEeCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3322  3       4556666677776532   366655556664 3432 33334566666667777777654

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.72  E-value=0.002  Score=50.66  Aligned_cols=136  Identities=14%  Similarity=0.036  Sum_probs=68.8

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcccccc--ceeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCCEEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFI--KSCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V--~s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      .+.+.|+||+++||.++-+-..++.|...-  -.|.....+ -.+|..-.+.+.. ++......=+...+|+.++ +.|+
T Consensus         3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~~t   80 (143)
T cd08900           3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFD-FRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IVYT   80 (143)
T ss_pred             EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EEEE
Confidence            456789999999999999877776675320  012222222 2455544444331 2211133345666766544 5555


Q ss_pred             Ee--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          139 II--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       139 ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      ..  .++.+......++.+.+.  ++  +|.+.-....-.+++  .+ ....+..-....|++|++.+|+
T Consensus        81 ~~~~~~~~~~~~s~v~~~l~~~--~~--gT~l~~~~~~~~~~~--~~-~~~~~~~GW~~~l~~L~~~l~~  143 (143)
T cd08900          81 YTMHIGGTLLSASLATVEFAPE--GG--GTRLTLTEQGAFLDG--DD-DPAGREQGTAALLDNLAAELER  143 (143)
T ss_pred             EeeccCCccccceEEEEEEEEC--CC--CEEEEEEEEEecccc--cc-hhhhHHHHHHHHHHHHHHHHhC
Confidence            42  222222222334555653  22  254433333211111  11 2234455567789999998874

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.67  E-value=0.0017  Score=51.31  Aligned_cols=134  Identities=11%  Similarity=0.115  Sum_probs=66.9

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccc----cceeEEccCCCCCcceEEEEEee-cCCCcceeeEeeceecCCCCEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHF----IKSCSVSDNFTMAVGSTRDVNVI-SGLPAATSTERLDILDDDRQVTG  136 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~----V~s~e~~eGd~g~vGsvR~lt~~-~G~p~~~~~ErLd~lDd~~~~~s  136 (209)
                      .+++.|+||+++||.++-+-..+..|..-    +..+.+.    -.+|..=.+.+. .++..-...=+...+|+.++ +.
T Consensus         3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d----~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~-l~   77 (146)
T cd08896           3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELD----LRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGER-LV   77 (146)
T ss_pred             EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEE----eecCcEEEEEEECCCCCEecceEEEEEEeCCCE-EE
Confidence            35688999999999999876666666431    2222221    133433333332 12211123455777777654 44


Q ss_pred             EE--EeecccCc-cce-EEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          137 FS--IIGGEHRL-RNY-RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       137 Y~--iieG~~p~-~~Y-~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      |+  +.++..+. ..+ ..++++.+.. ++   |.+.-...+ .++...++....-+..-....|++|++.+|
T Consensus        78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~g---T~Ltl~~~~-~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          78 FTDALTPGWRPAEKPFMTAIITFEDEG-GG---TRYTARARH-WTEADRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEEeecCCcCCCCCCcEEEEEEEEecC-Cc---EEEEEEEEe-CCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            55  33321221 122 3345666532 33   544321222 111111111222345668889999999887

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.55  E-value=0.0069  Score=47.77  Aligned_cols=133  Identities=14%  Similarity=0.048  Sum_probs=69.8

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccc-eeEEccCCCCCcceEEEEEe--ec------CCCcceeeEeeceecCCC
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK-SCSVSDNFTMAVGSTRDVNV--IS------GLPAATSTERLDILDDDR  132 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~-s~e~~eGd~g~vGsvR~lt~--~~------G~p~~~~~ErLd~lDd~~  132 (209)
                      ++++.|+||+++||+++-|...++.|.+--. .+.....+ ..+|..-.+.+  .+      .+......=++..+++.+
T Consensus         3 ~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~   81 (146)
T cd08895           3 RLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFD-AREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNE   81 (146)
T ss_pred             EEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEe-cccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCC
Confidence            4678999999999999998888777753110 12222121 23444333333  22      011112333577777765


Q ss_pred             CEEEEEEe--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          133 QVTGFSII--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       133 ~~~sY~ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      + +.|+..  ++..+ .....++.+.+.  ++  +|.+...... .+.+    ........-...-|.+|++.+|.
T Consensus        82 ~-i~~~~~~~~~~~~-~~~~v~~~~~~~--~~--~T~lt~~~~~-~~~~----~~~~~~~~GW~~~l~~L~~~le~  146 (146)
T cd08895          82 R-IVYTDVFDDPSLS-GEMTMTWTLSPV--SG--GTDVTIVQSG-IPDG----IPPEDCELGWQESLANLAALVEA  146 (146)
T ss_pred             E-EEEEEEecCCCCC-ceEEEEEEEEec--CC--CEEEEEEEeC-CCch----hhhhHHHHHHHHHHHHHHHHhcC
Confidence            4 556642  22233 222344455543  33  3666555543 2322    12234444566778899988763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.53  E-value=0.0018  Score=50.34  Aligned_cols=127  Identities=13%  Similarity=0.156  Sum_probs=68.4

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcccccccee--EEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSC--SVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~--e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      ++++.|+||+++||.++-+-..++.|......+  .....| -.+|..-.+.+.  +|.....+.=+...+++. +.+.|
T Consensus         3 ~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~~l~~   80 (133)
T cd08897           3 TVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAEND-LRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-KLIEY   80 (133)
T ss_pred             EEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeec-CCcCCEEEEEEEcCCCCcccccceEEEEECCC-CEEEE
Confidence            356889999999999999887878884332221  111122 256655444332  221111233445566654 45778


Q ss_pred             EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +..++      ...++++.+.  ++  +|.+.-.  ++. ...   .....+..-....|.+||+.+|.
T Consensus        81 ~~~~~------~~v~~~l~~~--~~--gT~l~l~--~~~-~~~---~~~~~~~~GW~~~l~~L~~~le~  133 (133)
T cd08897          81 TMEDG------REVEVEFTEE--GD--GTKVVET--FDA-ENE---NPVEMQRQGWQAILDNFKKYVES  133 (133)
T ss_pred             EcCCC------CEEEEEEEEC--CC--CEEEEEE--ECC-CCC---CcHHHHHHHHHHHHHHHHHHhhC
Confidence            86432      2345566653  22  3544322  222 111   12223444568899999998873

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=97.46  E-value=0.0015  Score=49.08  Aligned_cols=121  Identities=12%  Similarity=0.058  Sum_probs=63.6

Q ss_pred             ecChHHHHHHhhcCCCCCcc-ccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccC-
Q 046151           68 RAPNDVVWSIVRRFDQPQTY-KHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHR-  145 (209)
Q Consensus        68 ~APa~~VW~vVrdF~~~~~w-~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p-  145 (209)
                      +||+++||+++-+-..+..| ........+      .+|..-.+.-.+| ......=++..+++.++ +.|+.--++.+ 
T Consensus         1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~~~------~~Gg~~~~~~~~g-~~~~~~~~v~~~~p~~~-i~~~~~~~~~~~   72 (124)
T PF08327_consen    1 DAPPERVWEALTDPEGLAQWFTTSEAEMDF------RPGGSFRFMDPDG-GEFGFDGTVLEVEPPER-IVFTWRMPDDPD   72 (124)
T ss_dssp             SSSHHHHHHHHHSHHHHHHHSEEEEEEEEC------STTEEEEEEETTS-EEEEEEEEEEEEETTTE-EEEEEEEETSSS
T ss_pred             CcCHHHHHHHHCCHhHHhhccCCCcceeee------ecCCEEEEEecCC-CCceeeEEEEEEeCCEE-EEEEEEccCCCC
Confidence            69999999999998888899 221222222      3454333311222 11122224777777665 66775433322 


Q ss_pred             ccceEEEEEEEeecCCCCceEEE-EEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          146 LRNYRSVTSVHGFNRDGAICTVV-LESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       146 ~~~Y~sti~V~~~~~~g~~~T~v-~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      ...-..++.+.+ .+++   |.+ +....++     .++.....+..-....|++|++.+|
T Consensus        73 ~~~~~v~~~~~~-~~~~---T~l~~~~~~~~-----~~~~~~~~~~~gw~~~l~~L~~~lE  124 (124)
T PF08327_consen   73 GPESRVTFEFEE-EGGG---TRLTLTHSGFP-----DDDEEEEGMEQGWEQMLDRLKAYLE  124 (124)
T ss_dssp             CEEEEEEEEEEE-ETTE---EEEEEEEEEEH-----SHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEE-cCCc---EEEEEEEEcCC-----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            223334445565 2232   433 2222211     1222222266667888899999887

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=97.46  E-value=0.0051  Score=48.55  Aligned_cols=136  Identities=8%  Similarity=-0.012  Sum_probs=69.2

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcccccc-ceeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCC-EEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFI-KSCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQ-VTGFS  138 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V-~s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~-~~sY~  138 (209)
                      ++.++|+||+++||.++-+-..++.|...- -.+...+.| -.+|..-.+.+.. ++....+.=+...+|+.++ .|++.
T Consensus         3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t~~   81 (142)
T cd07826           3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECD-IRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQTEE   81 (142)
T ss_pred             EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEe-ccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEEeE
Confidence            467899999999999988766655554321 111122222 2455544444432 2111123445666776543 34444


Q ss_pred             EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      +.+.  +...-..++++.+.  ++  +|.+.-...+. .+...+......+..-....|++|++.++
T Consensus        82 ~~~~--~~~~s~v~~~l~~~--~~--gT~l~l~~~~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          82 FEGL--PDGVALETVTFTEL--GG--RTRLTATSRYP-SKEARDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             ecCC--CCCceEEEEEEEEC--CC--CEEEEEEEEeC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            4322  22222344455653  22  25443323331 11111223445666778888999988775

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=97.43  E-value=0.0031  Score=53.79  Aligned_cols=138  Identities=14%  Similarity=0.168  Sum_probs=85.8

Q ss_pred             CCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeec--CCCcceeeEeeceecCCC
Q 046151           55 SQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIS--GLPAATSTERLDILDDDR  132 (209)
Q Consensus        55 ~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~--G~p~~~~~ErLd~lDd~~  132 (209)
                      .|..++..  ++|++|+++||.+.+||-+++.|+-.+.|+++.+..  .    -+|++..  |+-+.+- -++ .-|..+
T Consensus        68 ~~i~v~~~--V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddk--r----SrW~~~ap~g~~v~We-a~i-t~d~~~  137 (217)
T COG5637          68 KPIEVEVQ--VTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDK--R----SRWKANAPLGLEVEWE-AEI-TKDIPG  137 (217)
T ss_pred             CceEEEEE--EEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCC--c----cceeEcCCCCceEEEe-ehh-hccCCC
Confidence            34444444  689999999999999999999999999999998654  1    2354432  2222221 222 247888


Q ss_pred             CEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHH-HHH---HHHHHHHHHHHHHHHHHhhc
Q 046151          133 QVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEED-TRL---FADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       133 ~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~-a~~---~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      ..|.+.=++|.- +.| +..+.+.+.+.+.   |.|.=...+.+|-+-.... ++.   ..+.-++.-|+..|...|..
T Consensus       138 e~I~W~Sl~Ga~-v~N-sG~VrF~~~pg~~---t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~  211 (217)
T COG5637         138 ERIQWESLPGAR-VEN-SGAVRFYDAPGDS---TEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG  211 (217)
T ss_pred             cEEeeecCCCCc-CCC-CccEEeeeCCCCc---eEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence            899999888742 333 3344555544332   5554444444555533222 222   23455788888888887763

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=97.35  E-value=0.0064  Score=48.12  Aligned_cols=132  Identities=12%  Similarity=-0.018  Sum_probs=64.4

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccc-cc-------cceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCE
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYK-HF-------IKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQV  134 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~-p~-------V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~  134 (209)
                      ..++|+||+++||.++-+  .+..|. |.       ...|++.    ..+|..-.....+|.  ....=+..++|+.++ 
T Consensus         4 ~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d----~~~GG~~~~~~~~g~--~~~~g~v~~v~p~~~-   74 (149)
T cd08891           4 KSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFE----PRAGGRWYEIGEDGT--ECEWGTVLAWEPPSR-   74 (149)
T ss_pred             EEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEc----ccCCcEEEEecCCCc--EeceEEEEEEcCCCE-
Confidence            457899999999999988  344553 32       2344443    134433222222231  122345666776654 


Q ss_pred             EEEEEe-ec-ccCccceEEEE--EEEeecCCCCceEEEEEEeeecCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          135 TGFSII-GG-EHRLRNYRSVT--SVHGFNRDGAICTVVLESYVVDVPEG--NTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       135 ~sY~ii-eG-~~p~~~Y~sti--~V~~~~~~g~~~T~v~~s~~~d~P~g--~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +.|+-. .. ..+...+.+.+  ++.+..+++   |.+.=........+  ..++.....+..--..-|+.|++.+|+
T Consensus        75 l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~g---T~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~  149 (149)
T cd08891          75 LVFTWQINADWRPDPDKASEVEVRFEAVGAEG---TRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK  149 (149)
T ss_pred             EEEEeccCCCcCcCCCCceEEEEEEEECCCCC---eEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence            556643 11 11222233444  445432122   44322222111222  122333444455566679999999885

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=97.35  E-value=0.01  Score=46.03  Aligned_cols=121  Identities=11%  Similarity=0.055  Sum_probs=63.2

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      .+++.|+||+++||+++-+-..++.|.....+.++..|     |..+   +.+|    .+.=+...+++.+ .+.|+---
T Consensus         3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~G-----G~~~---~~~g----~~~g~~~~i~p~~-~l~~~w~~   69 (126)
T cd08892           3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAKVG-----GKFS---LFGG----NITGEFVELVPGK-KIVQKWRF   69 (126)
T ss_pred             EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCCCC-----CEEE---EeCC----ceEEEEEEEcCCC-EEEEEEEc
Confidence            35688999999999999987777778643333333332     2333   2334    2333456666543 35555432


Q ss_pred             cccCccceEEEE--EEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          142 GEHRLRNYRSVT--SVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       142 G~~p~~~Y~sti--~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      .+.+.. ..+++  .+.+.  ++  +|.+.=.... .|.+    +....-.++-..-|++|++.+|
T Consensus        70 ~~~~~~-~~s~v~~~l~~~--~~--gT~ltl~~~g-~~~~----~~~~~~~GW~~~~~~~l~~~~~  125 (126)
T cd08892          70 KSWPEG-HYSTVTLTFTEK--DD--ETELKLTQTG-VPAG----EEERTREGWERYYFESIKQTFG  125 (126)
T ss_pred             CCCCCC-CcEEEEEEEEEC--CC--CEEEEEEEEC-CCCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence            222221 22334  44543  22  2543222222 2332    2233445555567889998876

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.0086  Score=48.31  Aligned_cols=133  Identities=11%  Similarity=0.030  Sum_probs=67.7

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcc--eEEEEEeecCCCcceeeEeeceecCCCC-EEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVG--STRDVNVISGLPAATSTERLDILDDDRQ-VTGFS  138 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vG--svR~lt~~~G~p~~~~~ErLd~lDd~~~-~~sY~  138 (209)
                      .+..+|+||+++||.++-+-..+..|.. -..|++.    ..+|  ....+... +++.....-+..++++..+ +|+|.
T Consensus        11 ~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d----~r~gg~~~~~~~~~-~g~~~~~~~~~~~v~p~~rIv~tw~   84 (149)
T COG3832          11 EIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFD----ARTGGGERVRFRGP-DGPVHSFEGEYLEVVPPERIVFTWD   84 (149)
T ss_pred             EEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccc----eecCCceEEeeecC-CCCeeecceEEEEEcCCcEEEEEec
Confidence            4567899999999999999888888875 3221111    1122  22223332 2233344566666776655 33444


Q ss_pred             EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHh
Q 046151          139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLF--ADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~--i~~v~k~gL~~Lk~~~E  205 (209)
                      .-+++.+...-..++++.+...++  ++..+.-..+  +- ..+.+.+..  +..-...-|++|++.++
T Consensus        85 ~~~~~~~~~~~~v~~~l~~~~~g~--~~~~~~~~~~--~~-~~~~~~~~~~~~~~Gw~~~~~~l~~~l~  148 (149)
T COG3832          85 FDEDGEPFLKSLVTITLTPEDDGG--TTTLVRTSGG--GF-LEDEDQKLGMGMEEGWGQLLDNLKALLE  148 (149)
T ss_pred             cCCCCCcccCceEEEEEEEecCCC--cEEEEEEeec--cc-cchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence            444444432234455666654333  2333222221  10 122222222  24446666777777665

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=97.04  E-value=0.01  Score=47.04  Aligned_cols=100  Identities=19%  Similarity=0.156  Sum_probs=59.2

Q ss_pred             EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecCCCCEEEEEEee
Q 046151           65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      .+|+||+++||+++.|...+....|.+++.+..+ + .-.+.+   +++-| |..   ..+=++..+|+.++.. .++-+
T Consensus         3 ~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~-~~~~~~---~v~vG-~i~~~~~g~~~~~~~~~~~~~~-~~~~g   75 (140)
T PF06240_consen    3 FEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-D-EYKGKV---KVKVG-PIKGTFDGEVRITEIDPPESYT-LEFEG   75 (140)
T ss_dssp             EEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-T-EEEEEE---EEESC-CCEEEEEEEEEEEEEETTTEEE-EEEEE
T ss_pred             EEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-c-EEEEEE---EEEec-cEEEEEEEEEEEEEcCCCcceE-eeeec
Confidence            4799999999999999999999999999998875 3 112222   22222 321   2234556666666653 44443


Q ss_pred             cccCccce--EEEEEEEeecCCCCceEEEEEEeeec
Q 046151          142 GEHRLRNY--RSVTSVHGFNRDGAICTVVLESYVVD  175 (209)
Q Consensus       142 G~~p~~~Y--~sti~V~~~~~~g~~~T~v~~s~~~d  175 (209)
                      .+. ....  ...+++...+ ++ . |.+.|...++
T Consensus        76 ~g~-~~~~~~~~~~~~~~~~-~~-~-T~v~~~~~~~  107 (140)
T PF06240_consen   76 RGR-GGGSSASANITLSLED-DG-G-TRVTWSADVE  107 (140)
T ss_dssp             EEC-TCCEEEEEEEEEEECC-CT-C-EEEEEEEEEE
T ss_pred             cCC-ccceEEEEEEEEEcCC-CC-C-cEEEEEEEEE
Confidence            332 2233  3344444332 22 3 8899988876

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=96.96  E-value=0.023  Score=44.44  Aligned_cols=126  Identities=14%  Similarity=0.010  Sum_probs=64.9

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      ...|+||+++||.++-+-..++.|...-.+.++.      +|..-.+.+...++  .+.=+...+++. +.+.|+...++
T Consensus         5 ~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~------~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~w~~~~   75 (136)
T cd08901           5 AMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLE------EGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIEWGDPG   75 (136)
T ss_pred             EEEecCCHHHHHHHhcCHHHhccccccCCCcccc------CCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEEecCCC
Confidence            4679999999999999988877763222233333      34332344433322  222355566554 55667764321


Q ss_pred             cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 046151          144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDT--RLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a--~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                       +  .-..++++.+.+. +  +|.+.=. ....|.. ..+..  ...+..-...-|++|++.+|.
T Consensus        76 -~--~s~v~~~l~~~~~-g--gT~ltl~-~~~~~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~  132 (136)
T cd08901          76 -E--PTTVEWTFEELDD-G--RTFVTIT-ESGFPGT-DDEGLKQALGSTEGWTLVLAGLKAYLEH  132 (136)
T ss_pred             -C--CEEEEEEEEECCC-C--cEEEEEE-ECCCCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence             1  1122345554321 2  2433211 2222333 22111  122334567779999999885

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=95.55  E-value=0.13  Score=42.15  Aligned_cols=59  Identities=27%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             hHHHHHHhh-cCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151           71 NDVVWSIVR-RFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        71 a~~VW~vVr-dF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      .++||.-+. .--+|+.+-|.|.+|++.+..  ...-.|.|+|. +   ..++|+....-+.  .+.|
T Consensus        20 r~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~--~~~~~R~v~fg-~---~~v~E~v~~~~~~--~V~f   79 (149)
T PF08982_consen   20 REQLWRGLVLKARNPQLFVPGIDSCEVLSES--DTVLTREVTFG-G---ATVRERVTLYPPE--RVDF   79 (149)
T ss_dssp             HHHHHHHHHHHHH-GGGT-TT--EEEEEEE---SSEEEEEEEET-T---EEEEEEEEEETTT--EEEE
T ss_pred             HHHHHHHHHHHHhChhhCccccCeEEEEecC--CCeEEEEEEEC-C---cEEEEEEEEeCCc--EEEE
Confidence            358999855 567799999999999998653  55778999992 3   5899999866554  5666

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=95.53  E-value=0.91  Score=37.11  Aligned_cols=63  Identities=16%  Similarity=0.202  Sum_probs=47.4

Q ss_pred             hHHHHHH-hhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           71 NDVVWSI-VRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        71 a~~VW~v-VrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      .+++|.- +++--+|+.+-|.|.+|++.+..  .--..|.|+|..+    .++|+....-+  ..+.|.+-.
T Consensus        19 r~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~--~~~l~Rel~f~~~----~v~e~vt~~~~--~~v~f~~~~   82 (141)
T cd08863          19 RAQLWRGLVLRAREPQLFVPGLDRCEVLSES--GTVLERELTFGPA----KIRETVTLEPP--SRVHFLQAD   82 (141)
T ss_pred             HHHHHhHHHhhhCCchhcccccceEEEEecC--CCEEEEEEEECCc----eEEEEEEecCC--cEEEEEecC
Confidence            4699987 55678899999999999998654  2246699999654    78899885433  457777754

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=95.06  E-value=1.6  Score=35.93  Aligned_cols=131  Identities=22%  Similarity=0.258  Sum_probs=81.2

Q ss_pred             EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEee---cCCCcc-eeeEeece--ecCCCCEEEEE
Q 046151           65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVI---SGLPAA-TSTERLDI--LDDDRQVTGFS  138 (209)
Q Consensus        65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~---~G~p~~-~~~ErLd~--lDd~~~~~sY~  138 (209)
                      .+|+||.+.||+.-.+-++++.--|--+ +..-.|+  .++..-++++.   -|.|.+ +-+-|.++  +|+-. +++=.
T Consensus         8 ~~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~--eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~~-~FtDv   83 (153)
T COG4276           8 TTITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS--EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNGS-RFTDV   83 (153)
T ss_pred             eEecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC--cccceeeeeecceeecCCCCceEEEEeeecccCCcc-eeeee
Confidence            4799999999999988888655444333 3333443  56655555553   244432 34455555  55543 35555


Q ss_pred             EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-----HHHHHHHHHHHHHHHHHHHHHH
Q 046151          139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-----EEDTRLFADTVVKLNLQKLVSV  203 (209)
Q Consensus       139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-----~e~a~~~i~~v~k~gL~~Lk~~  203 (209)
                      .+.|++|--|++-+-+..+  ++|  +|+..-+-.+.+|.+..     .-.+..+.+.+|+.-=..|++-
T Consensus        84 ~i~gPfp~~~WrHtH~F~~--egg--~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l~r~  149 (153)
T COG4276          84 CITGPFPALNWRHTHNFVD--EGG--GTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTLFRG  149 (153)
T ss_pred             eecCCccceeeEEEeeeec--CCC--cEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHHhhc
Confidence            6788888777776666553  233  58888877777887732     2234567777777655555543

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=94.91  E-value=1.4  Score=37.04  Aligned_cols=151  Identities=9%  Similarity=0.004  Sum_probs=80.4

Q ss_pred             CCCCceeeEEeEEEecChHHHHH-HhhcCCCCCccccccceeEEccCCCCCcceEEEEEeec-CCCcc---eeeEeecee
Q 046151           54 LSQNQCSSLLAQRIRAPNDVVWS-IVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIS-GLPAA---TSTERLDIL  128 (209)
Q Consensus        54 ~~~~~~~~~v~~~I~APa~~VW~-vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~-G~p~~---~~~ErLd~l  128 (209)
                      +.+.++.-. ...|+||+++|+. ++.|.+..+.|-+.+..+++.+..++..--+..++... +.|++   .+.-|--..
T Consensus        44 ~~~~~~~k~-~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~  122 (208)
T cd08868          44 PGVGKVFRL-TGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGI  122 (208)
T ss_pred             CCCceEEEE-EEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEe
Confidence            444444443 4588999999985 56789999999999999988755322222223222111 12321   121122222


Q ss_pred             cCCCCEEEEEEee--------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHH-HHHHHHHHHHHHHH
Q 046151          129 DDDRQVTGFSIIG--------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDT-RLFADTVVKLNLQK  199 (209)
Q Consensus       129 Dd~~~~~sY~iie--------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a-~~~i~~v~k~gL~~  199 (209)
                      ++....+...-++        |-++...+.+...++|.++ +..+|.+.+....| |-|.--.-. ..++....-.-|++
T Consensus       123 ~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~-~~~~t~v~~~~~~D-p~G~iP~~lvN~~~~~~~~~~~~~  200 (208)
T cd08868         123 RENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN-NPNKCNFTWLLNTD-LKGWLPQYLVDQALASVLLDFMKH  200 (208)
T ss_pred             cCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC-CCCceEEEEEEEEC-CCCCCcceeeehhhHHHHHHHHHH
Confidence            3333322222222        2234555556667777643 22357777766666 444422222 23444445566778


Q ss_pred             HHHHHhhc
Q 046151          200 LVSVAESQ  207 (209)
Q Consensus       200 Lk~~~E~~  207 (209)
                      |++.++.|
T Consensus       201 Lr~~~~~~  208 (208)
T cd08868         201 LRKRIATL  208 (208)
T ss_pred             HHHHHhhC
Confidence            88877654

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=94.78  E-value=1.4  Score=37.43  Aligned_cols=146  Identities=15%  Similarity=0.080  Sum_probs=81.4

Q ss_pred             ceeeEEeEEEecChHHHH-HHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeec-CCCcc---eeeEeeceecCCC
Q 046151           58 QCSSLLAQRIRAPNDVVW-SIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIS-GLPAA---TSTERLDILDDDR  132 (209)
Q Consensus        58 ~~~~~v~~~I~APa~~VW-~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~-G~p~~---~~~ErLd~lDd~~  132 (209)
                      +-.- ....|++|+++|+ .++-|....+.|.+.+.++++++-.+...=-++.++... +.+++   .+.-|...-++.+
T Consensus        49 k~~k-~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~  127 (209)
T cd08905          49 KVFR-LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST  127 (209)
T ss_pred             cEEE-EEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence            4444 4468999999999 777789999999999999998754311221234332211 11121   2222222223333


Q ss_pred             CEE-EEEEe-------ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
Q 046151          133 QVT-GFSII-------GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSV  203 (209)
Q Consensus       133 ~~~-sY~ii-------eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~  203 (209)
                      ..+ ..++.       .|-++..+..+...++|.+++ ..+|.+.|....| |-|.--. -...++...--.-|.+|++.
T Consensus       128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~-~~~t~v~~~~~~D-pkG~iP~~lvN~~~~~~~~~~~~~Lr~~  205 (209)
T cd08905         128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGD-PSKTKLTWLLSID-LKGWLPKSIINQVLSQTQVDFANHLRQR  205 (209)
T ss_pred             EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCC-CCceEEEEEEeec-CCCCCCHHHHHHHhHHhHHHHHHHHHHH
Confidence            322 22221       122234455555567776432 1247777766666 5565322 33466666666778888888


Q ss_pred             Hhh
Q 046151          204 AES  206 (209)
Q Consensus       204 ~E~  206 (209)
                      ++.
T Consensus       206 ~~~  208 (209)
T cd08905         206 MAS  208 (209)
T ss_pred             Hhc
Confidence            764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=93.49  E-value=2.2  Score=36.53  Aligned_cols=46  Identities=26%  Similarity=0.367  Sum_probs=36.7

Q ss_pred             EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEE
Q 046151           65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDV  110 (209)
Q Consensus        65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~l  110 (209)
                      .+|+||+++||+++.|...-+.|-+.++++++.+-.+....-++..
T Consensus        51 ~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~   96 (205)
T cd08874          51 GVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLV   96 (205)
T ss_pred             EEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEE
Confidence            3689999999999999999999999999999986543344434443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=92.88  E-value=1.2  Score=35.02  Aligned_cols=21  Identities=10%  Similarity=0.131  Sum_probs=17.8

Q ss_pred             EecChHHHHHHhhcCCCCCcc
Q 046151           67 IRAPNDVVWSIVRRFDQPQTY   87 (209)
Q Consensus        67 I~APa~~VW~vVrdF~~~~~w   87 (209)
                      ++||+++||.++-+-..+..|
T Consensus         1 f~ap~e~Vw~A~Tdp~~l~~w   21 (132)
T PTZ00220          1 FYVPPEVLYNAFLDAYTLTRL   21 (132)
T ss_pred             CCCCHHHHHHHHcCHHHHHHH
Confidence            589999999999987776666

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=92.00  E-value=7  Score=33.26  Aligned_cols=146  Identities=13%  Similarity=0.076  Sum_probs=78.6

Q ss_pred             ceeeEEeEEEecChHHHH-HHhhcCCCCCccccccceeEEccCCCCCcceEEEEEee-cCCCcc---eeeEeeceecCCC
Q 046151           58 QCSSLLAQRIRAPNDVVW-SIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVI-SGLPAA---TSTERLDILDDDR  132 (209)
Q Consensus        58 ~~~~~v~~~I~APa~~VW-~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~-~G~p~~---~~~ErLd~lDd~~  132 (209)
                      ++.-. ..+|++|+++++ .++.|....+.|-+.+.+|++++-.+...=-++.++.. .++|.+   .+.-|--.-+.+.
T Consensus        49 ~~fk~-~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~  127 (209)
T cd08906          49 KTFIL-KAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR  127 (209)
T ss_pred             cEEEE-EEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc
Confidence            77744 468899999998 68999999999999999999875431111112333321 112332   2222222223333


Q ss_pred             C-EEEEEEeeccc-Cccce------EEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
Q 046151          133 Q-VTGFSIIGGEH-RLRNY------RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSV  203 (209)
Q Consensus       133 ~-~~sY~iieG~~-p~~~Y------~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~  203 (209)
                      . .+..++.-..+ |-++|      .+-..+.+.. .+..+|.+.|....| |-|+--. ....++...--.-|.+|++.
T Consensus       128 ~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~-~~~~~t~vt~~~~~D-p~G~lP~~lvN~~~~~~~~~~~~~LR~~  205 (209)
T cd08906         128 YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSA-SNPSVCTFIWILNTD-LKGRLPRYLIHQSLAATMFEFASHLRQR  205 (209)
T ss_pred             EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECC-CCCCceEEEEEEecC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 23333322122 23333      2223444421 122247777777766 5554322 33455655666677888887


Q ss_pred             Hhh
Q 046151          204 AES  206 (209)
Q Consensus       204 ~E~  206 (209)
                      ++.
T Consensus       206 ~~~  208 (209)
T cd08906         206 IRD  208 (209)
T ss_pred             Hhh
Confidence            764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=91.72  E-value=7.4  Score=32.94  Aligned_cols=135  Identities=10%  Similarity=0.009  Sum_probs=76.2

Q ss_pred             EecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecCCCCEE-EEEEe--
Q 046151           67 IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDDDRQVT-GFSII--  140 (209)
Q Consensus        67 I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd~~~~~-sY~ii--  140 (209)
                      .++|++.+++++.|-..-+.|-+.+..+++++..+.. -.|-...+....|++   .+.-|...-++....+ ..++.  
T Consensus        56 ~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~-~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~~  134 (222)
T cd08871          56 PDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPN-NDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKHK  134 (222)
T ss_pred             CCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCC-CEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccCC
Confidence            3799999999999988888999999999887543211 233333333233331   1222222222222222 22221  


Q ss_pred             -----ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 046151          141 -----GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       141 -----eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                           .|-+++..+.+...+.|.+.+   +|.+.+....| |-|.--. -...++....-.-|++|++.+++
T Consensus       135 ~~P~~~g~VR~~~~~~g~~i~p~~~~---~t~vt~~~~~D-p~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~  202 (222)
T cd08871         135 KYPPRKGFVRAISLLTGYLIRPTGPK---GCTLTYVTQND-PKGSLPKWVVNKATTKLAPKVMKKLHKAALK  202 (222)
T ss_pred             CCCCCCCeEEeEEEccEEEEEECCCC---CEEEEEEEecC-CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                 122345556666677776432   37777766666 5554322 23455556566778888888876

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=91.41  E-value=4.1  Score=34.32  Aligned_cols=153  Identities=12%  Similarity=0.097  Sum_probs=84.6

Q ss_pred             HHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCc-ceeeEe
Q 046151           46 VVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA-ATSTER  124 (209)
Q Consensus        46 ~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~-~~~~Er  124 (209)
                      |..|-+..+...-..-.+...|++|++.+.+++.|-+..+.|.|++.+++..+..+ ..-.+-.+.+  ..|. -.-||=
T Consensus        33 i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~-~~~~v~y~~~--~~PwPv~~RD~  109 (215)
T cd08877          33 IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLG-RADKVCYLRV--DLPWPLSNREA  109 (215)
T ss_pred             eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecC-CceEEEEEEE--eCceEecceEE
Confidence            34444444443334444456899999999999999988899999998887764431 1112222222  2443 111332


Q ss_pred             e------ceecCCCCEEEEEE--eec----------ccC--------ccceEEEEEEEeecCCCCceEEEEEEeeecCCC
Q 046151          125 L------DILDDDRQVTGFSI--IGG----------EHR--------LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE  178 (209)
Q Consensus       125 L------d~lDd~~~~~sY~i--ieG----------~~p--------~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~  178 (209)
                      +      +.+|. +..+...+  +..          .+|        +..+.+...++|.+++.   |.+......| |.
T Consensus       110 v~~~~~~~~~~~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~---t~v~~~~~~D-P~  184 (215)
T cd08877         110 VFRGFGVDRLEE-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTK---CYLRFVANVD-PK  184 (215)
T ss_pred             EEEEEEEeeecc-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCC---eEEEEEEEcC-CC
Confidence            2      23333 33332221  110          022        23344445667754332   5554444454 55


Q ss_pred             CC-C-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          179 GN-T-EEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       179 g~-~-~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +. - .--...++..+....|.+|++++++
T Consensus       185 g~~IP~~liN~~~k~~~~~~~~~l~k~~~~  214 (215)
T cd08877         185 MSLVPKSLLNFVARKFAGLLFEKIQKAAKN  214 (215)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            54 2 3344677788888899999998875

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=90.64  E-value=9.5  Score=32.23  Aligned_cols=150  Identities=13%  Similarity=0.026  Sum_probs=85.8

Q ss_pred             CCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcc-eEEEEEeecCCCcc---eeeEeeceecC
Q 046151           55 SQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVG-STRDVNVISGLPAA---TSTERLDILDD  130 (209)
Q Consensus        55 ~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vG-svR~lt~~~G~p~~---~~~ErLd~lDd  130 (209)
                      ++-...-......++|++.|.+++.|-+.-+.|-+.+.++++++.+. ..+ -+-.+.++.--|+.   .+.-|-...|+
T Consensus        42 s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~-~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~  120 (207)
T cd08911          42 TGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDP-ETGSEIIYWEMQWPKPFANRDYVYVRRYIIDE  120 (207)
T ss_pred             CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccC-CCCCEEEEEEEECCCCCCCccEEEEEEEEEcC
Confidence            44444444443449999999999999888889999999999876531 112 12223333223332   44444445565


Q ss_pred             CCCEE---EEEEe-------ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHH
Q 046151          131 DRQVT---GFSII-------GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQK  199 (209)
Q Consensus       131 ~~~~~---sY~ii-------eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~  199 (209)
                      ++..+   ++.+-       .|-+++..|.+...+.|....+..++.+...+.. .|-|+--. ....++....-.=|++
T Consensus       121 ~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~-dPgG~IP~~lvN~~~~~~~~~~l~~  199 (207)
T cd08911         121 ENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD-NPGVNIPSYITSWVAMSGMPDFLER  199 (207)
T ss_pred             CCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe-CCCCccCHHHHHHHHHhhccHHHHH
Confidence            55432   22222       2344677788888888763111123444444444 46665433 2345666666666778


Q ss_pred             HHHHHhh
Q 046151          200 LVSVAES  206 (209)
Q Consensus       200 Lk~~~E~  206 (209)
                      |++.+.+
T Consensus       200 l~~a~~~  206 (207)
T cd08911         200 LRNAALK  206 (207)
T ss_pred             HHHHHhc
Confidence            8777654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=90.39  E-value=10  Score=32.13  Aligned_cols=141  Identities=10%  Similarity=0.028  Sum_probs=74.9

Q ss_pred             EeEEEecChHHHHHHhhcCCCC--CccccccceeEEccCCCCCcceEEEEEeec--CCCc---cee-eEeeceecCCCCE
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQP--QTYKHFIKSCSVSDNFTMAVGSTRDVNVIS--GLPA---ATS-TERLDILDDDRQV  134 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~--~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~--G~p~---~~~-~ErLd~lDd~~~~  134 (209)
                      ...+|+|++++|++++-|-.+.  +.|-+.+.++++++--+....-+|. ....  ++.+   ..+ .-.....++....
T Consensus        50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~  128 (208)
T cd08903          50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTIS  128 (208)
T ss_pred             EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEE
Confidence            4467899999999999876554  7999999999988654333333443 2110  1111   111 1222333443333


Q ss_pred             EEEEEeec-cc-CccceE------EEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHh
Q 046151          135 TGFSIIGG-EH-RLRNYR------SVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       135 ~sY~iieG-~~-p~~~Y~------sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      +.+..+.- .. |-++|.      +...+.+.+.+ ..+|.+.+....| |-|+--. -...++......-|++|++.+.
T Consensus       129 i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~-~~~t~v~~~~~~D-pkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~  206 (208)
T cd08903         129 SNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGE-PDKTQLVSFFQTD-LSGYLPQTVVDSFFPASMAEFYNNLTKAVK  206 (208)
T ss_pred             EeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCC-CCceEEEEEEEec-cCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            33333322 11 223331      23344554322 2247677766666 5555332 3345555555577888888765


Q ss_pred             h
Q 046151          206 S  206 (209)
Q Consensus       206 ~  206 (209)
                      +
T Consensus       207 ~  207 (208)
T cd08903         207 A  207 (208)
T ss_pred             h
Confidence            4

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=89.51  E-value=5.1  Score=33.04  Aligned_cols=93  Identities=11%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeeccc
Q 046151           65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEH  144 (209)
Q Consensus        65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~  144 (209)
                      ..|..+|++++++|.|-..-+...|....+.+.+.+  ...-+=.+++.-++--.+..=|.. +++..++|--.+++|+ 
T Consensus         8 ~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~--~~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~~l~~GP-   83 (146)
T COG2867           8 ALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERN--ERELIAELDVGFKGIRETFTTRVT-LKPTARSIDMKLIDGP-   83 (146)
T ss_pred             eeccCCHHHHHHHHHHHHhCchhccccccceEeccC--cceeEEEEEEEhhheeeeeeeeee-ecCchhhhhhhhhcCC-
Confidence            468999999999999988877888888888888776  334555555543321122222222 4555557878888885 


Q ss_pred             CccceEEEEEEEeecCCC
Q 046151          145 RLRNYRSVTSVHGFNRDG  162 (209)
Q Consensus       145 p~~~Y~sti~V~~~~~~g  162 (209)
                       ++...++=+..|...++
T Consensus        84 -Fk~L~~~W~F~pl~~~~  100 (146)
T COG2867          84 -FKYLKGGWQFTPLSEDA  100 (146)
T ss_pred             -hhhhcCceEEEECCCCc
Confidence             45667777888864443

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=85.01  E-value=22  Score=29.81  Aligned_cols=134  Identities=13%  Similarity=0.013  Sum_probs=73.6

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecCCCC--EEEEE
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDDDRQ--VTGFS  138 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd~~~--~~sY~  138 (209)
                      ..+|+||+++|++.+-+.  -+.|-+.+.++++++-.+...--++ ..+..-.|+.   .+.-|.-..|.++.  .+.++
T Consensus        49 ~~~v~a~~~~v~~~l~d~--r~~Wd~~~~~~~vie~id~~~~i~y-~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~  125 (197)
T cd08869          49 STEVEAPPEEVLQRILRE--RHLWDDDLLQWKVVETLDEDTEVYQ-YVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVET  125 (197)
T ss_pred             EEEeCCCHHHHHHHHHHH--HhccchhhheEEEEEEecCCcEEEE-EEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEE
Confidence            357899999999988764  3789999999998754311111122 2222222331   22333333333333  32333


Q ss_pred             Eee--cccC-----ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046151          139 IIG--GEHR-----LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       139 iie--G~~p-----~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      =++  ..+|     ...+.+...+.|.+. +  +|.+..-...| |-|.--.-.......+.-..|++|+..+
T Consensus       126 Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~-~--~t~vty~~~~D-p~G~iP~wl~N~~~~~~~~~~~~l~~~~  194 (197)
T cd08869         126 SVEHTEPVPLGGVRAVVLASRYLIEPCGS-G--KSRVTHICRVD-LRGRSPEWYNKVYGHLCARELLRIRDSF  194 (197)
T ss_pred             CCcCCCCCCCCCEEEEEEeeeEEEEECCC-C--CeEEEEEEEEC-CCCCCCceeecchHhHHHHHHHHHHhhc
Confidence            232  1223     233344445676542 2  37677766666 5554444345555677888889988764

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=85.00  E-value=19  Score=29.12  Aligned_cols=135  Identities=18%  Similarity=0.128  Sum_probs=68.2

Q ss_pred             EeEEEecChHHHHHHhhc--CCC--CCcc---ccccceeEEccCCCCCcceEEEEEe-ecCCCc-------c----eeeE
Q 046151           63 LAQRIRAPNDVVWSIVRR--FDQ--PQTY---KHFIKSCSVSDNFTMAVGSTRDVNV-ISGLPA-------A----TSTE  123 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrd--F~~--~~~w---~p~V~s~e~~eGd~g~vGsvR~lt~-~~G~p~-------~----~~~E  123 (209)
                      ++.++++|+++||+++.|  |-.  .+..   ...+.+++.. |+  ++-....-.+ .+.+|.       +    .-+|
T Consensus         3 ~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~-~~--g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e   79 (159)
T PF10698_consen    3 HSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVD-GD--GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE   79 (159)
T ss_pred             EEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEc-CC--eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence            456899999999999885  322  1111   1123333332 22  1111111111 123342       1    1134


Q ss_pred             eeceecCCCCEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046151          124 RLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSV  203 (209)
Q Consensus       124 rLd~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~  203 (209)
                      +....++..+..+|++--...|++ .++++.+.+.  ++  +|.+.....+.+.-+---....+++...++..|+...+.
T Consensus        80 ~w~~~~~g~~~g~~~~~~~G~P~~-~~G~~~L~~~--~~--gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~  154 (159)
T PF10698_consen   80 TWTPLDDGRRTGTFTVSIPGAPVS-ISGTMRLRPD--GG--GTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEF  154 (159)
T ss_pred             EEecCCCCeEEEEEEEEecCceEE-EEEEEEEecC--CC--CEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHH
Confidence            444457888888888754444554 6788888872  22  355544444443222222234445555666666665555


Q ss_pred             Hh
Q 046151          204 AE  205 (209)
Q Consensus       204 ~E  205 (209)
                      ..
T Consensus       155 ~~  156 (159)
T PF10698_consen  155 TA  156 (159)
T ss_pred             HH
Confidence            43

The function is not known.

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=83.33  E-value=29  Score=30.52  Aligned_cols=55  Identities=5%  Similarity=0.124  Sum_probs=41.1

Q ss_pred             CCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEE
Q 046151           55 SQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVN  111 (209)
Q Consensus        55 ~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt  111 (209)
                      +.-++.-.. ..|++|+++|++++.|...-+.|-+.+.+|++++-.+.... +..++
T Consensus        78 s~~~~fK~e-~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-vY~v~  132 (240)
T cd08913          78 DKFLSFKVE-MVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA-IYHVT  132 (240)
T ss_pred             CCccEEEEE-EEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcE-EEEEe
Confidence            444566444 58899999999999999999999999999998754322222 55554

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=83.18  E-value=26  Score=29.40  Aligned_cols=147  Identities=12%  Similarity=0.063  Sum_probs=80.1

Q ss_pred             CCCceeeEEeEEE-ecChHHHHHHhhcCCCCCccccccceeEEccCCCC-CcceEEEEEeecCCCc---ceeeEeeceec
Q 046151           55 SQNQCSSLLAQRI-RAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTM-AVGSTRDVNVISGLPA---ATSTERLDILD  129 (209)
Q Consensus        55 ~~~~~~~~v~~~I-~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g-~vGsvR~lt~~~G~p~---~~~~ErLd~lD  129 (209)
                      +..+-.-.+. ++ ++|++.|.+++.|-..-+.|-+.+.++++++-+.. +.-.++ +.++.--|.   ..+.-|-...|
T Consensus        47 s~~~~~k~~~-~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y-~~~~~P~P~s~RD~V~~r~~~~~  124 (209)
T cd08870          47 TGLYEYLVRG-VFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVR-WVKKFPFPLSDREYVIARRLWES  124 (209)
T ss_pred             CCceEEEEEE-EEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEE-EEEECCCcCCCceEEEEEEEEEc
Confidence            3334444443 45 77999999999998888899999999988755421 122222 222212223   12322322233


Q ss_pred             -CCCCEEEEEEee-------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 046151          130 -DDRQVTGFSIIG-------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKL  200 (209)
Q Consensus       130 -d~~~~~sY~iie-------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~L  200 (209)
                       +..+.+..+-+.       |-.++..|.+...+.|.. .+..+|-+.-.+..| |.|.- .-.+..++....-.-|++|
T Consensus       125 ~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~-~~~~~t~~~~~~~~d-p~G~IP~wlvN~~~~~~~~~~l~~l  202 (209)
T cd08870         125 DDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVK-GDGQGSACEVTYFHN-PDGGIPRELAKLAVKRGMPGFLKKL  202 (209)
T ss_pred             CCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEec-CCCCceEEEEEEEEC-CCCCCCHHHHHHHHHhhhHHHHHHH
Confidence             333333222221       444677888888888763 111235555555555 55543 2333455555555566777


Q ss_pred             HHHHh
Q 046151          201 VSVAE  205 (209)
Q Consensus       201 k~~~E  205 (209)
                      ++.+.
T Consensus       203 ~~a~~  207 (209)
T cd08870         203 ENALR  207 (209)
T ss_pred             HHHHh
Confidence            76653

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=82.47  E-value=27  Score=30.77  Aligned_cols=51  Identities=6%  Similarity=0.029  Sum_probs=38.7

Q ss_pred             CceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEE
Q 046151           57 NQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTR  108 (209)
Q Consensus        57 ~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR  108 (209)
                      .++...+ ..|++|+++||+++.|...-+.|-+.+.+|++++..+...+-++
T Consensus        76 ~l~fk~e-~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy  126 (235)
T cd08873          76 VLSFCVE-LKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYH  126 (235)
T ss_pred             ceEEEEE-EEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEE
Confidence            3444444 46999999999999999999999999999999863322444444

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=82.07  E-value=23  Score=27.93  Aligned_cols=53  Identities=11%  Similarity=0.141  Sum_probs=40.0

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCC
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLP  117 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p  117 (209)
                      ..+|++|+++||+++.+....+.|-+.+.++++.+-.... -.+....+....|
T Consensus        44 ~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~-~~i~~~~~~~p~p   96 (193)
T cd00177          44 EGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEH-TDIIYYKTKPPWP   96 (193)
T ss_pred             EEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCC-eEEEEEEeeCCCc
Confidence            4579999999999999988888999999999988654222 3444555554444

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
3k3k_A	211	Crystal Structure Of Dimeric Abscisic Acid (Aba) Re		4e-74
3k90_A	193	The Abscisic Acid Receptor Pyr1 In Complex With Abs		1e-73
3njo_A	194	X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Co		3e-73
3zvu_A	193	Structure Of The Pyr1 His60pro Mutant In Complex Wi		2e-72
3jrs_A	208	Crystal Structure Of (+)-Aba-Bound Pyl1 Length = 20		9e-70
3kdj_A	202	Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le		1e-69
3jrq_B	186	Crystal Structure Of (+)-aba-bound Pyl1 In Complex		1e-67
3kay_A	178	Crystal Structure Of Abscisic Acid Receptor Pyl1 Le		2e-64
3nj1_A	193	X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabact		2e-52
3kdh_A	190	Structure Of Ligand-Free Pyl2 Length = 190		3e-52
3nj0_A	193	X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Co		3e-52
3kaz_A	176	Crystal Structure Of Abscisic Acid Receptor Pyl2 Le		9e-51
3ujl_A	177	Crystal Structure Of Abscisic Acid Bound Pyl2 In Co		1e-50
3nmh_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 In		1e-50
3nmp_A	178	Crystal Structure Of The Abscisic Receptor Pyl2 Mut		6e-50
3oji_A	189	X-Ray Crystal Structure Of The Py13 -Pyrabactin Com		1e-49
3klx_A	209	Crystal Structure Of Native Abscisic Acid Receptor		2e-49
4dsb_A	186	Complex Structure Of Abscisic Acid Receptor Pyl3 Wi		9e-49
4dsc_A	188	Complex Structure Of Abscisic Acid Receptor Pyl3 Wi		5e-48
3qrz_B	223	Crystal Structure Of Native Abscisic Acid Receptor		4e-45
3oqu_A	205	Crystal Structure Of Native Abscisic Acid Receptor		9e-43
3uqh_A	191	Crystal Strcuture Of Aba Receptor Pyl10 (Apo) Lengt		9e-43
3rt2_A	183	Crystal Structure Of Apo-Pyl10 Length = 183		1e-42
3rt0_C	183	Crystal Structure Of Pyl10-Hab1 Complex In The Abse		1e-42

>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid And Aba-Free Open-Lid Subunits Length = 211

Iteration: 1
 Score =  273 bits (699), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 150/177 (84%)
Query: 30  IPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKH 89
           +PS +T +E  ELK S+ EFHTYQL    CSSL AQRI AP ++VWSIVRRFD+PQTYKH
Sbjct: 21  MPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKH 80
Query: 90  FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNY 149
           FIKSCSV  NF M VG TRDV VISGLPA TSTERLDILDD+R+VTGFSIIGGEHRL NY
Sbjct: 81  FIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNY 140
Query: 150 RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           +SVT+VH F ++  I TVVLESYVVD+PEGN+E+DTR+FADTVVKLNLQKL +VAE+
Sbjct: 141 KSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 197

>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic Acid Length = 193

Iteration: 1
 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/178 (73%), Positives = 150/178 (84%)
Query: 29  AIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYK 88
           A+ S +T +E  ELK S+ EFHTYQL    CSSL AQRI AP ++VWSIVRRFD+PQTYK
Sbjct: 2   AMASELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYK 61
Query: 89  HFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRN 148
           HFIKSCSV  NF M VG TRDV VISGLPA TSTERLDILDD+R+VTGFSIIGGEHRL N
Sbjct: 62  HFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTN 121
Query: 149 YRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           Y+SVT+VH F ++  I TVVLESYVVD+PEGN+E+DTR+FADTVVKLNLQKL +VAE+
Sbjct: 122 YKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 179

>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex Length = 194

Iteration: 1
 Score =  270 bits (691), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/177 (73%), Positives = 149/177 (84%)
Query: 30  IPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKH 89
           +PS +T +E  ELK S+ EFHTYQL    CSSL AQRI AP ++VWSIVRRFD+PQTYKH
Sbjct: 4   MPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKH 63
Query: 90  FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNY 149
           FIKSCSV  NF M VG TRDV VISGL A TSTERLDILDD+R+VTGFSIIGGEHRL NY
Sbjct: 64  FIKSCSVEQNFEMRVGCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNY 123
Query: 150 RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           +SVT+VH F ++  I TVVLESYVVD+PEGN+E+DTR+FADTVVKLNLQKL +VAE+
Sbjct: 124 KSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 180

>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The Hab1 Phosphatase And Abscisic Acid Length = 193

Iteration: 1
 Score =  268 bits (685), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/178 (73%), Positives = 149/178 (83%)
Query: 29  AIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYK 88
           A+ S +T +E  ELK S+ EFHTYQL    CSSL AQRI AP ++VWSIVRRFD+PQTYK
Sbjct: 2   AMASELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYK 61
Query: 89  HFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRN 148
            FIKSCSV  NF M VG TRDV VISGLPA TSTERLDILDD+R+VTGFSIIGGEHRL N
Sbjct: 62  PFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTN 121
Query: 149 YRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           Y+SVT+VH F ++  I TVVLESYVVD+PEGN+E+DTR+FADTVVKLNLQKL +VAE+
Sbjct: 122 YKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEA 179

>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1 Length = 208

Iteration: 1
 Score =  259 bits (661), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 156/186 (83%), Gaps = 3/186 (1%)
Query: 24  TTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQ 83
           T HH  +PS +TQDEF +L QS+ EFHTYQL   +CSSLLAQRI AP + VWS+VRRFD+
Sbjct: 19  TLHHQTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDR 78
Query: 84  PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143
           PQ YKHFIKSC+VS++F M VG TRDVNVISGLPA TS ERLD+LDDDR+VTGFSI GGE
Sbjct: 79  PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGE 138
Query: 144 HRLRNYRSVTSVHGFNRDGA---ICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKL 200
           HRLRNY+SVT+VH F ++     I TVVLESYVVDVPEGN+EEDTRLFADTV++LNLQKL
Sbjct: 139 HRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKL 198
Query: 201 VSVAES 206
            S+ E+
Sbjct: 199 ASITEA 204

>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 202

Iteration: 1
 Score =  258 bits (660), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 156/186 (83%), Gaps = 3/186 (1%)
Query: 24  TTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQ 83
           T HH  +PS +TQDEF +L QS+ EFHTYQL   +CSSLLAQRI AP + VWS+VRRFD+
Sbjct: 3   TLHHQTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDR 62
Query: 84  PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE 143
           PQ YKHFIKSC+VS++F M VG TRDVNVISGLPA TS ERLD+LDDDR+VTGFSI GGE
Sbjct: 63  PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGE 122
Query: 144 HRLRNYRSVTSVHGFNRDGA---ICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKL 200
           HRLRNY+SVT+VH F ++     I TVVLESYVVDVPEGN+EEDTRLFADTV++LNLQKL
Sbjct: 123 HRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKL 182
Query: 201 VSVAES 206
            S+ E+
Sbjct: 183 ASITEA 188

>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 186

Iteration: 1
 Score =  252 bits (643), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 153/180 (85%), Gaps = 3/180 (1%)
Query: 30  IPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKH 89
           +PS +TQDEF +L QS+ EFHTYQL   +CSSLLAQRI AP + VWS+VRRFD+PQ YKH
Sbjct: 4   MPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKH 63
Query: 90  FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNY 149
           FIKSC+VS++F M VG TRDVNVISGLPA TS ERLD+LDDDR+VTGFSI GGEHRLRNY
Sbjct: 64  FIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNY 123
Query: 150 RSVTSVHGFNRDGA---ICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           +SVT+VH F ++     I TVVLESYVVDVPEGN+EEDTRLFADTV++LNLQKL S+ E+
Sbjct: 124 KSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 183

>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1 Length = 178

Iteration: 1
 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/172 (73%), Positives = 146/172 (84%), Gaps = 3/172 (1%)
Query: 38  EFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVS 97
           EF +L QS+ EFHTYQL   +CSSLLAQRI AP + VWS+VRRFD+PQ YKHFIKSC+VS
Sbjct: 3   EFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVS 62
Query: 98  DNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHG 157
           ++F M VG TRDVNVISGLPA TS ERLD+LDDDR+VTGFSI GGEHRLRNY+SVT+VH 
Sbjct: 63  EDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHR 122
Query: 158 FNRDGA---ICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           F ++     I TVVLESYVVDVPEGN+EEDTRLFADTV++LNLQKL S+ E+
Sbjct: 123 FEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEA 174

>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A Complex Length = 193

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 128/176 (72%), Gaps = 3/176 (1%)
Query: 33  GVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK 92
           G+T +E   L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K
Sbjct: 12  GLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVK 71
Query: 93  SCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSV 152
            C +       VGS R+V VISGLPA+TSTERL+ +DDD +V  F I+GGEHRL+NY+SV
Sbjct: 72  RCRLISG-DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKNYKSV 130
Query: 153 TSVHGF-NRD-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           TSV+ F N+D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 131 TSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 186

>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2 Length = 190

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 3/176 (1%)
Query: 33  GVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK 92
           G+T +E   L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K
Sbjct: 9   GLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVK 68
Query: 93  SCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSV 152
            C +       VGS R+V VISGLPA+TSTERL+ +DDD +V  F ++GGEHRL+NY+SV
Sbjct: 69  RCRLISG-DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSV 127
Query: 153 TSVHGF-NRD-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           TSV+ F N+D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 128 TSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 183

>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex Length = 193

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 3/176 (1%)
Query: 33  GVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK 92
           G+T +E   L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K
Sbjct: 12  GLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVK 71
Query: 93  SCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSV 152
            C +       VGS R+V VISGLPA+TSTERL+ +DDD +V  F ++GGEHRL+NY+SV
Sbjct: 72  RCRLISG-DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSV 130
Query: 153 TSVHGF-NRD-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           TSV+ F N+D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 131 TSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 186

>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 Length = 176

Iteration: 1
 Score =  196 bits (498), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 96/167 (57%), Positives = 123/167 (73%), Gaps = 3/167 (1%)
Query: 42  LKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFT 101
           L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K C +     
Sbjct: 6   LEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG-D 64
Query: 102 MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF-NR 160
             VGS R+V VISGLPA+TSTERL+ +DDD +V  F ++GGEHRL+NY+SVTSV+ F N+
Sbjct: 65  GDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQ 124
Query: 161 D-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 125 DSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 171

>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex With Type 2c Protein Phosphatase Abi2 Length = 177

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/167 (57%), Positives = 123/167 (73%), Gaps = 3/167 (1%)
Query: 42  LKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFT 101
           L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K C +     
Sbjct: 7   LEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG-D 65
Query: 102 MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF-NR 160
             VGS R+V VISGLPA+TSTERL+ +DDD +V  F ++GGEHRL+NY+SVTSV+ F N+
Sbjct: 66  GDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQ 125
Query: 161 D-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 126 DSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 172

>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex With Pyrabactin Length = 178

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/167 (57%), Positives = 123/167 (73%), Gaps = 3/167 (1%)
Query: 42  LKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFT 101
           L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K C +     
Sbjct: 7   LEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG-D 65
Query: 102 MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF-NR 160
             VGS R+V VISGLPA+TSTERL+ +DDD +V  F ++GGEHRL+NY+SVTSV+ F N+
Sbjct: 66  GDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQ 125
Query: 161 D-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 126 DSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 172

>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant A93f In Complex With Pyrabactin Length = 178

Iteration: 1
 Score =  193 bits (490), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 95/167 (56%), Positives = 122/167 (73%), Gaps = 3/167 (1%)
Query: 42  LKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFT 101
           L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF+K C +     
Sbjct: 7   LEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG-D 65
Query: 102 MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF-NR 160
             VGS R+V VISGLP +TSTERL+ +DDD +V  F ++GGEHRL+NY+SVTSV+ F N+
Sbjct: 66  GDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQ 125
Query: 161 D-GAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           D G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 126 DSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 172

>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex Length = 189

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 9/183 (4%)
Query: 31  PSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHF 90
           P G+T+DEF  L   +   HT+  S N C+SL+A R+ AP   +W  VR F  P  YKHF
Sbjct: 2   PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHF 61
Query: 91  IKSCSVSDNFT----MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRL 146
           IKSC++  N      + VG+ R+V+V+SGLPA+TS E L++LD+++++  F ++GGEHRL
Sbjct: 62  IKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRL 121
Query: 147 RNYRSVTSVHGF-----NRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV 201
            NYRSVTSV+ F     ++   + +VVLESY+VD+P+GNTEEDTR+F DTVVK NLQ L 
Sbjct: 122 NNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLA 181
Query: 202 SVA 204
            ++
Sbjct: 182 VIS 184

>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3 Length = 209

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/183 (49%), Positives = 127/183 (69%), Gaps = 9/183 (4%)
Query: 31  PSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHF 90
           P G+T+DEF  L   +   HT+  S N C+SL+A R+ AP   +W  VR F  P  YKHF
Sbjct: 22  PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHF 81
Query: 91  IKSCSVSDNFT----MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRL 146
           IKSC++  N      + VG+ R+V+V+SGLPA+TS E L++LD+++++  F ++GGEHRL
Sbjct: 82  IKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRL 141
Query: 147 RNYRSVTSVHGF-----NRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV 201
            NYRSVTSV+ F     ++   + +VVLESY+VD+P+GNTEEDTR+F DTVVK NLQ L 
Sbjct: 142 NNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLA 201
Query: 202 SVA 204
            ++
Sbjct: 202 VIS 204

>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With (+)-Aba In Spacegroup Of I 212121 At 2.70a Length = 186

Iteration: 1
 Score =  189 bits (480), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 126/181 (69%), Gaps = 9/181 (4%)
Query: 33  GVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK 92
           G+T+DEF  L   +   HT+  S N C+SL+A R+ AP   +W  VR F  P  YKHFIK
Sbjct: 1   GLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIK 60
Query: 93  SCSVSDNFT----MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRN 148
           SC++  N      + VG+ R+V+V+SGLPA+TS E L++LD+++++  F ++GGEHRL N
Sbjct: 61  SCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNN 120
Query: 149 YRSVTSVHGF-----NRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSV 203
           YRSVTSV+ F     ++   + +VVLESY+VD+P+GNTEEDTR+F DTVVK NLQ L  +
Sbjct: 121 YRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVI 180
Query: 204 A 204
           +
Sbjct: 181 S 181

>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With (+)-Aba In Spacegroup Of H32 At 1.95a Length = 188

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 125/180 (69%), Gaps = 9/180 (5%)
Query: 34  VTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKS 93
           +T+DEF  L   +   HT+  S N C+SL+A R+ AP   +W  VR F  P  YKHFIKS
Sbjct: 4   LTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKS 63
Query: 94  CSVSDNFT----MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNY 149
           C++  N      + VG+ R+V+V+SGLPA+TS E L++LD+++++  F ++GGEHRL NY
Sbjct: 64  CTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNY 123
Query: 150 RSVTSVHGF-----NRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVA 204
           RSVTSV+ F     ++   + +VVLESY+VD+P+GNTEEDTR+F DTVVK NLQ L  ++
Sbjct: 124 RSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 183

>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9 With Aba Length = 205

Iteration: 1
 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 115/165 (69%), Gaps = 2/165 (1%)
Query: 41  ELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNF 100
           E  Q V   H +   +NQC+S L + I+AP  +VWS+VRRFDQPQ YK F+  C+V  + 
Sbjct: 34  ETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTVIGD- 92
Query: 101 TMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNR 160
              +GS R+VNV SGLPA TSTERL++LDD+  + G  IIGG+HRL+NY S+ +VH    
Sbjct: 93  -PEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEII 151
Query: 161 DGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
           +G   T+V+ES+VVDVP+GNT+++T  F + +++ NL+ L  V+E
Sbjct: 152 EGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSE 196

>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo) Length = 191

Iteration: 1
 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 5/170 (2%)
Query: 40  DELKQSVVEF----HTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCS 95
           DE K+   E+    H ++L ++QCSS L + I+AP  +VWSIVRRFD+PQ YK FI  C 
Sbjct: 4   DETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCV 63
Query: 96  VSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSV 155
           V     + VGS R+V++ SGLPA  STE L+ILDD+  + G  I+GG+HRL+NY S  S+
Sbjct: 64  VQGK-KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISL 122
Query: 156 HGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
           H    DG   T+ +ES+VVDVPEGNT+E+T  F + +++ NL  L  V E
Sbjct: 123 HSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTE 172

>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10 Length = 183

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 5/170 (2%)
Query: 40  DELKQSVVEF----HTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCS 95
           DE K+   E+    H ++L ++QCSS L + I+AP  +VWSIVRRFD+PQ YK FI  C 
Sbjct: 4   DETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCV 63
Query: 96  VSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSV 155
           V     + VGS R+V++ SGLPA  STE L+ILDD+  + G  I+GG+HRL+NY S  S+
Sbjct: 64  VQGK-KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISL 122
Query: 156 HGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
           H    DG   T+ +ES+VVDVPEGNT+E+T  F + +++ NL  L  V E
Sbjct: 123 HSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTE 172

>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 183

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 5/170 (2%)
Query: 40  DELKQSVVEF----HTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCS 95
           DE K+   E+    H ++L ++QCSS L + I+AP  +VWSIVRRFD+PQ YK FI  C 
Sbjct: 4   DETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCV 63
Query: 96  VSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSV 155
           V     + VGS R+V++ SGLPA  STE L+ILDD+  + G  I+GG+HRL+NY S  S+
Sbjct: 64  VQGK-KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISL 122
Query: 156 HGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
           H    DG   T+ +ES+VVDVPEGNT+E+T  F + +++ NL  L  V E
Sbjct: 123 HSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADVTE 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	5e-87
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	2e-82
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	4e-80
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	2e-68
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	7e-66
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	8e-66
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	8e-59
2le1_A	151	Uncharacterized protein; structural genomics, nort	3e-26
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	9e-24
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	9e-18
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	3e-15
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	8e-13
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	6e-12
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	6e-11
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	1e-10
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	6e-10
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	5e-07
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	7e-07
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	2e-06
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	8e-05

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score =  254 bits (650), Expect = 5e-87
 Identities = 135/200 (67%), Positives = 161/200 (80%), Gaps = 3/200 (1%)

Query: 10  TSSSMADPETRPTYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRA 69
           +S    +  ++   T HH  +PS +TQDEF +L QS+ EFHTYQL   +CSSLLAQRI A
Sbjct: 5   SSPVNEEENSQRISTLHHQTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHA 64

Query: 70  PNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILD 129
           P + VWS+VRRFD+PQ YKHFIKSC+VS++F M VG TRDVNVISGLPA TS ERLD+LD
Sbjct: 65  PPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLD 124

Query: 130 DDRQVTGFSIIGGEHRLRNYRSVTSVHGFNR---DGAICTVVLESYVVDVPEGNTEEDTR 186
           DDR+VTGFSI GGEHRLRNY+SVT+VH F +   +  I TVVLESYVVDVPEGN+EEDTR
Sbjct: 125 DDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTR 184

Query: 187 LFADTVVKLNLQKLVSVAES 206
           LFADTV++LNLQKL S+ E+
Sbjct: 185 LFADTVIRLNLQKLASITEA 204

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score =  243 bits (620), Expect = 2e-82
 Identities = 131/185 (70%), Positives = 150/185 (81%)

Query: 22  TYTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRF 81
                   +PS +T +E  ELK S+ EFHTYQL    CSSL AQRI AP ++VWSIVRRF
Sbjct: 13  GLVPRGSHMPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRF 72

Query: 82  DQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG 141
           D+PQTYKHFIKSCSV  NF M VG TRDV VISGLPA TSTERLDILDD+R+VTGFSIIG
Sbjct: 73  DKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIG 132

Query: 142 GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV 201
           GEHRL NY+SVT+VH F ++  I TVVLESYVVD+PEGN+E+DTR+FADTVVKLNLQKL 
Sbjct: 133 GEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLA 192

Query: 202 SVAES 206
           +VAE+
Sbjct: 193 TVAEA 197

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score =  236 bits (603), Expect = 4e-80
 Identities = 91/185 (49%), Positives = 128/185 (69%), Gaps = 9/185 (4%)

Query: 31  PSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHF 90
           P G+T+DEF  L   +   HT+  S N C+SL+A R+ AP   +W  VR F  P  YKHF
Sbjct: 2   PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHF 61

Query: 91  IKSCSVSDN----FTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRL 146
           IKSC++  N      + VG+ R+V+V+SGLPA+TS E L++LD+++++  F ++GGEHRL
Sbjct: 62  IKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRL 121

Query: 147 RNYRSVTSVHGF-----NRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV 201
            NYRSVTSV+ F     ++   + +VVLESY+VD+P+GNTEEDTR+F DTVVK NLQ L 
Sbjct: 122 NNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLA 181

Query: 202 SVAES 206
            ++ +
Sbjct: 182 VISTA 186

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score =  206 bits (526), Expect = 2e-68
 Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 3/178 (1%)

Query: 31  PSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHF 90
             G+T +E   L+  +  +H ++     C+SL+ QRI AP  VVW ++RRFD P+ YKHF
Sbjct: 7   VKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHF 66

Query: 91  IKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYR 150
           +K C +       VGS R+V VISGLPA+TSTERL+ +DDD +V  F ++GGEHRL+NY+
Sbjct: 67  VKRCRLISG-DGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYK 125

Query: 151 SVTSVHGF--NRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES 206
           SVTSV+ F     G + TVVLESY VD+PEGNTEEDT++F DTVVKLNLQKL   A S
Sbjct: 126 SVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATS 183

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score =  201 bits (511), Expect = 7e-66
 Identities = 83/186 (44%), Positives = 118/186 (63%), Gaps = 2/186 (1%)

Query: 23  YTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFD 82
           Y      +  G       E  Q V   H +   +NQC+S L + I+AP  +VWS+VRRFD
Sbjct: 16  YFQMMDGVEGGTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFD 75

Query: 83  QPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG 142
           QPQ YK F+  C+V  +    +GS R+VNV SGLPA TSTERL++LDD+  + G  IIGG
Sbjct: 76  QPQKYKPFVSRCTVIGDPE--IGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGG 133

Query: 143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVS 202
           +HRL+NY S+ +VH    +G   T+V+ES+VVDVP+GNT+++T  F + +++ NL+ L  
Sbjct: 134 DHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLAD 193

Query: 203 VAESQV 208
           V+E   
Sbjct: 194 VSERLA 199

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score =  199 bits (508), Expect = 8e-66
 Identities = 81/173 (46%), Positives = 116/173 (67%), Gaps = 2/173 (1%)

Query: 34  VTQDEFDELK-QSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK 92
           +  DE  +++ + + + H ++L ++QCSS L + I+AP  +VWSIVRRFD+PQ YK FI 
Sbjct: 1   MNGDETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFIS 60

Query: 93  SCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSV 152
            C V     + VGS R+V++ SGLPA  STE L+ILDD+  + G  I+GG+HRL+NY S 
Sbjct: 61  RCVVQGK-KLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSST 119

Query: 153 TSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE 205
            S+H    DG   T+ +ES+VVDVPEGNT+E+T  F + +++ NL  L  V E
Sbjct: 120 ISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTE 172

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151

 Score = 97.5 bits (242), Expect = 3e-26
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 6/140 (4%)

Query: 66  RIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERL 125
            + AP   VW++V  F     +   + + ++        G+ R     +        ERL
Sbjct: 9   EVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTE---EELVERL 65

Query: 126 DILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDT 185
              D+  +   +++      + N+R+V  V   +        V+ + + D       E  
Sbjct: 66  VERDESARRLVYTMPDPPFPITNHRAVLEVVPRDDRH---CTVVWTAMFDCSPETARELE 122

Query: 186 RLFADTVVKLNLQKLVSVAE 205
            +  D V  + L  L     
Sbjct: 123 SVIGDGVFAVGLNALAERYG 142

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146

 Score = 91.4 bits (226), Expect = 9e-24
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 67  IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
           I    + VW ++  F+    +  +I S  +++      G  R +    G    T  ERL+
Sbjct: 10  IFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTE-----GGRVRHLANPDG---ETIIERLE 61

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTR 186
           + +D  +   +SI+     + NY S   V     +     V         P   ++E+  
Sbjct: 62  VFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGT-ESNTSLVEWSGTF--TPVAVSDEEAI 118

Query: 187 LFADTVVKLNLQKLVSVAES 206
                +    L+ L      
Sbjct: 119 NLVHGIYSDGLKALQHAFLD 138

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160

 Score = 75.9 bits (186), Expect = 9e-18
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 67  IRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFT-MAVGSTRDVNVISGLPAATSTERL 125
           + AP + VWS +R F         IKSC         +VG+ R +N           + L
Sbjct: 10  VDAPVERVWSRIRNFHDFSWAPSLIKSCKKVGGGGGYSVGARRLLN-------GEFLDTL 62

Query: 126 DILDDDRQVTGFSIIGGE-----HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN 180
               +  +   +S+  G        + NY     +     D    T V  S   +     
Sbjct: 63  IAYSEIERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDD--TTFVEWSGSWESASTE 120

Query: 181 TEEDTRLFADTVVKLNLQKLVSVAESQ 207
             E    + +TV +  L  L +   S+
Sbjct: 121 AVE----YMNTVYRSLLADLAAEFTSE 143

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score = 69.6 bits (170), Expect = 3e-15
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 67  IRAPNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTER 124
           I+A  D    +         +     I+ C + +     VGS    N +    A  + ER
Sbjct: 25  IKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKER 84

Query: 125 LDILDDDRQVTGFSIIGGEHRLRNYRSVTS----VHGFNRDGAIC--TVVLESYVVDVPE 178
           ++ ++ D+ +  F +I G   ++ Y+S              G+I    +  E    +V  
Sbjct: 85  IEAVEPDKNLITFRVIEG-DLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAH 143

Query: 179 GNTEEDTRLFADTVVK 194
             T      F   V K
Sbjct: 144 PETLLQ---FCVEVSK 156

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score = 62.6 bits (152), Expect = 8e-13
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 67  IRAPNDVVWSI-VRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTE 123
           +    + +W++  + F    P+   H +K   + +     VG+    N +  +  +   E
Sbjct: 11  LSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEG-DGGVGTILIFNFLPEVSPSYQRE 69

Query: 124 RLDILDDDRQVTGFSIIGGE---HRLRNYRSVTSVHGFNRDGAICTVVLESYVV-DVPEG 179
            +   D+     G  +I G      L  Y++   +     D  +  V +      D+ E 
Sbjct: 70  EITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEK 129

Query: 180 NTEEDTRLFADTVVK 194
            T   T       ++
Sbjct: 130 VTPTKTSQSTLMYLR 144

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score = 60.4 bits (146), Expect = 6e-12
 Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 69  APNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
            P  +  + V   D   P+     IK   + +      G+ + +    G        ++D
Sbjct: 14  PPPRLFKAFVLDADNLVPKIAPQAIKHSEILEG-DGGPGTIKKITFGEGSQYGYVKHKID 72

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNTEE 183
            +D +     +++I G+        ++           G+I       +     E   E 
Sbjct: 73  SIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEH 132

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score = 58.5 bits (141), Expect = 6e-11
 Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 16/146 (10%)

Query: 67  IRAPNDVVWSIVRRFDQ----PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATST 122
           + A  D +W++          P       +   +  +    VG+  D+  + G       
Sbjct: 37  VAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEIIGDGG--VGTILDMTFVPGEFPHEYK 94

Query: 123 ERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEG 179
           E+  ++D++ ++    +I G +                  +D  +     E +V      
Sbjct: 95  EKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKP---- 150

Query: 180 NTEEDTRLFADTVVKLNLQKLVSVAE 205
              E  ++    +    L  +     
Sbjct: 151 ---EFVKIVEPLITTGPLAAMADAIS 173

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score = 55.1 bits (132), Expect = 6e-10
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 69  APNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
           AP+ +  ++V    Q   +   H  KS  + +     VG+   +  + G P      + D
Sbjct: 21  APHRLFKALVLERHQVLVKAQPHVFKSGEIIEG-DGGVGTVTKITFVDGHPLTYMLHKFD 79

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTV 167
            +D       +++  G+    N   V         G     
Sbjct: 80  EIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSKG 120

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 69  APNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
               +  + +   D   P+     I S    +      G+ + ++   G P     +R+D
Sbjct: 14  PAARLFKAFILDGDNLFPKVAPQAISSVENIEG-NGGPGTIKKISFPEGFPFKYVKDRVD 72

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTS---VHGFNRDGAICTVVLESYVVDVPEGNTEE 183
            +D       +S+I G         +++   +      G+I  +  + +     E   E+
Sbjct: 73  EVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQ 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 7e-08
 Identities = 25/228 (10%), Positives = 63/228 (27%), Gaps = 68/228 (29%)

Query: 18  ETR-PTYTTHHLAIPSGVT-QDEFDELKQSVVEFHTYQLSQNQ---------C--SSLLA 64
           E R   Y  + +     V+    + +L+Q++      +L   +            + +  
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVAL 168

Query: 65  QRIRA-------PNDVVWSIVRRFDQP------------QTYKHFIKSCSVSDNFTMAVG 105
               +          + W  ++  + P            Q   ++      S N  + + 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 106 STRDVNVISGLPAATSTER-LDILDD--DRQV-TGFSIIGGEHRLRNYRS---VTSVHGF 158
           S +    +  L  +   E  L +L +  + +    F          N      +T+    
Sbjct: 229 SIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAF----------NLSCKILLTT---- 272

Query: 159 NRDGAICTVVLESY-----VVDVPEGNTEEDTR-LFADTVVKLNLQKL 200
            R   +   +  +      +       T ++ + L     +    Q L
Sbjct: 273 -RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDL 318

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 39/229 (17%), Positives = 58/229 (25%), Gaps = 86/229 (37%)

Query: 34  VTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPN-----DVVWSIVRRFDQPQTYK 88
           +  +       S          Q +   LL  +    N       V +        + + 
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQN-------AKAWN 260

Query: 89  HFIKSCSVSDNFTMAVGSTRDVNVISGLPAA--------------TSTERLDIL------ 128
            F  SC +    T     TR   V   L AA              T  E   +L      
Sbjct: 261 AFNLSCKIL--LT-----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 129 -DDD--RQVTG-----FSIIG-----GEHRLRNYRSVT---------------------- 153
              D  R+V        SII      G     N++ V                       
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 154 -----SVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNL 197
                SV  F     I T++L     DV     + D  +  + + K +L
Sbjct: 374 MFDRLSV--FPPSAHIPTILLSLIWFDVI----KSDVMVVVNKLHKYSL 416

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 6/131 (4%)

Query: 69  APNDVVWSIVRRFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDI 127
           AP  +  ++V   D         I+S  + +      G+ + +  I G  +     +++ 
Sbjct: 15  APAKLYKALVTDADIIIPKAVETIQSVEIVEG-NGGPGTIKKLTFIEGGESKYVLHKIEA 73

Query: 128 LDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNTEED 184
           +D+      +SI+GG         ++           G+I  V ++       + N EE+
Sbjct: 74  IDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPN-EEE 132

Query: 185 TRLFADTVVKL 195
            +         
Sbjct: 133 GKAAKARGDAF 143

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score = 46.2 bits (109), Expect = 7e-07
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 69  APNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
           AP  +  ++ +  D+  P+  +       V  N     G+ + +  I     +    +LD
Sbjct: 14  APAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGG--PGTIKKIIAIHDGHTSFVLHKLD 71

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVT---SVHGFNRDGAICTVVLESYVVDVPEGNTEE 183
            +D+      +SIIGGE    +   ++    +      G+I  + ++ +     +  +E 
Sbjct: 72  AIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHT--KGDVLSET 129

Query: 184 DTRLFADTVVKL 195
                    + L
Sbjct: 130 VRDQAKFKGLGL 141

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 19/119 (15%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 69  APNDVVWSIVRRFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDI 127
           AP  +  ++ +  D   Q     I+S  + +     VG+ + +    G   +   +++D 
Sbjct: 14  APAKLYKALTKDSDTIAQKIDGPIQSIELVEG-NGGVGTIKKITANEGDKTSFVLQKVDA 72

Query: 128 LDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNTEE 183
           +D+      +SI+GG     +   ++        +  G+I  V L+ +       +   
Sbjct: 73  IDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAV 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	100.0
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	100.0
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	100.0
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	100.0
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	100.0
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	100.0
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	100.0
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	100.0
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.97
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	99.95
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	99.95
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	99.94
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	99.94
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.94
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	99.94
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	99.94
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	99.94
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	99.94
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	99.93
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	99.93
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	99.93
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	99.91
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.75
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.6
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.6
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.51
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.49
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.47
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.07
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.05
2pcs_A	162	Conserved protein; structural genomics, unknown fu	98.93
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	98.92
2leq_A	146	Uncharacterized protein; start domains, structural	98.72
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.68
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.59
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.5
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	98.49
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	98.43
2il5_A	171	Hypothetical protein; structural genomics, APC2365	98.35
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.25
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	98.24
2lcg_A	142	Uncharacterized protein; start domain, structural	98.2
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.18
2ldk_A	172	Uncharacterized protein; structural genomics, nort	98.11
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.08
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.04
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.01
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.0
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	97.99
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	97.99
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	97.96
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	97.95
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	97.93
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	97.91
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	97.91
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	97.89
3put_A	166	Hypothetical conserved protein; structural genomic	97.76
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	97.67
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	97.62
3qsz_A	189	STAR-related lipid transfer protein; structural ge	97.46
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	97.39
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	97.29
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	97.17
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.07
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.97
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	96.95
2lio_A	136	Uncharacterized protein; structural genomics, nort	96.92
2luz_A	192	CALU16; structural genomics, northeast structural	96.54
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	94.79
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	94.35
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	94.26
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	94.2
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	93.64
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	90.83
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	85.7
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	84.24

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=6.3e-57  Score=383.78  Aligned_cols=197  Identities=70%  Similarity=1.080  Sum_probs=164.7

Q ss_pred             CCCCCCCCCCC--CCCccCCCCCCCChhhhhhhHHHHHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCcccc
Q 046151           12 SSMADPETRPT--YTTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKH   89 (209)
Q Consensus        12 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p   89 (209)
                      ||.-..+||.+  +++||+++|+|||++|+.+|+++|++||+|+|+||||+++++++|+||+++||++|+||++++.|+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~c~~~v~~~I~ApadkVW~lv~Df~~l~~w~p   84 (208)
T 3jrs_A            5 SSPVNEEENSQRISTLHHQTMPSDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKH   84 (208)
T ss_dssp             -----------------------CCCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCT
T ss_pred             CCCcChhhcccccccceeecCCCCCCHHHHHHHHHHHHHHhccCCCCCeEeEEEEEEEeCCHHHHHHHHhCcCChhHccc
Confidence            44445566666  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccCccceEEEEEEEeecCCCC---ceE
Q 046151           90 FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGA---ICT  166 (209)
Q Consensus        90 ~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~---~~T  166 (209)
                      +|++|++.+|+++++|+||.|+|.+|+|+++++|||+++|+++|+|+|+|++|++|+++|+|+++|+|..++++   .|+
T Consensus        85 ~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDde~~~~sYsIieG~lpv~~Y~sti~V~p~~~g~~t~V~Wt  164 (208)
T 3jrs_A           85 FIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWT  164 (208)
T ss_dssp             TEEEEECCTTCCCSTTCEEEEEECTTSSCCEEEEEEEEEETTTTEEEEEEEESSSSCTTCEEEEEEEEEEC-----CEEE
T ss_pred             cceEEEEecCCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEEEEEeeCCcceeeEEEEEEEEEccCCCccEEEEE
Confidence            99999999998779999999999999999999999999999999999999999999999999999999764422   345


Q ss_pred             EEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          167 VVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       167 ~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      ..+++|..|+|+|+++++++.|++++|++||++||+++|+++
T Consensus       165 ~~fes~~~D~p~g~~~e~a~~~~~~vy~~gL~~L~~~~e~~~  206 (208)
T 3jrs_A          165 VVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN  206 (208)
T ss_dssp             EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            556677778999999999999999999999999999999986

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=100.00  E-value=1.3e-56  Score=376.93  Aligned_cols=177  Identities=51%  Similarity=0.904  Sum_probs=164.9

Q ss_pred             CCCCChhhhhhhHHHHHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEcc-CCCCC---cce
Q 046151           31 PSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSD-NFTMA---VGS  106 (209)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~e-Gd~g~---vGs  106 (209)
                      |+|||++|+.+|.++|++||+|.++|+||+|+++++|+||+++||++|+||++|+.|||+|++|++++ |+++.   +||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vGs   81 (189)
T 3oji_A            2 PYGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGT   81 (189)
T ss_dssp             CTTCCHHHHHHHHHHHHHHSCCCCC-CEEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTTC
T ss_pred             CcccCHHHHHHhHHHHHHhcccCCCCCccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999997 86322   999


Q ss_pred             EEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccCccceEEEEEEEeecC--CC---CceEEEEEEeeecCCCCCC
Q 046151          107 TRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNR--DG---AICTVVLESYVVDVPEGNT  181 (209)
Q Consensus       107 vR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~--~g---~~~T~v~~s~~~d~P~g~~  181 (209)
                      ||.|+|++|.|+++++|||++||+++|+|+|+|++|++|++||+|+++|+++++  +|   ..+|+++|+|.+|+|+|++
T Consensus        82 VR~ltl~~G~P~~~i~ErL~~lDde~~~~sY~Iieg~~pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~t  161 (189)
T 3oji_A           82 IREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNT  161 (189)
T ss_dssp             EEEEEECSSSSBSEEEEEEEEEETTTTEEEEEEEECSBSSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTSC
T ss_pred             EEEEEecCCCcCceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999875  44   3689999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          182 EEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       182 ~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      ++++++|++++|++||++||+++|+.
T Consensus       162 ~e~~~~~v~~v~~~gL~~L~~~~e~~  187 (189)
T 3oji_A          162 EEDTRMFVDTVVKSNLQNLAVISTAS  187 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999974

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=100.00  E-value=2e-54  Score=369.08  Aligned_cols=185  Identities=71%  Similarity=1.076  Sum_probs=169.9

Q ss_pred             CCccCCCCCCCChhhhhhhHHHHHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCC
Q 046151           24 TTHHLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMA  103 (209)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~  103 (209)
                      .+||+++|+|||++|+.+|+++|++||+|+|+||||+++++++|+||+++||++|+||++++.|+|+|++|++.+|++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~c~~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eGd~g~   94 (211)
T 3k3k_A           15 VPRGSHMPSELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMR   94 (211)
T ss_dssp             ------CCSSCCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCC
T ss_pred             ccCCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCeEeEEEEEEEcCCHHHHHHHHhCcCChhHcCccceEEEEecCCCCC
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999998779


Q ss_pred             cceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH
Q 046151          104 VGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE  183 (209)
Q Consensus       104 vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e  183 (209)
                      +|+||.|+|.+|+|+++++|||+.+|+++|+|+|+|++|++|+++|+++++|.|.++++-.|+..+++|..|+|+|++++
T Consensus        95 vGsVR~lt~~~G~p~~~vkErL~~lDd~~~~~sYsIieg~lpv~~Y~sti~V~p~~~ggV~Wt~~fes~~~D~P~g~~~e  174 (211)
T 3k3k_A           95 VGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSED  174 (211)
T ss_dssp             TTCEEEEEESSSSSCEEEEEEEEEEETTTTEEEEEEEEETTGGGTCEEEEEEEEEEETTEEEEEEEEEEEEECCSSSSSS
T ss_pred             CCcEEEEEecCCCccceEEEEEEEEeccCCEEEEEEeecCcceeEEEEEEEEEECCCCCEEEEEEEEEecCCCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999987554455666778888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          184 DTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       184 ~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      +++.|++++|++||++||+++|+++
T Consensus       175 ~a~~~v~~iy~~gL~~L~~~~e~~~  199 (211)
T 3k3k_A          175 DTRMFADTVVKLNLQKLATVAEAMA  199 (211)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999975

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=100.00  E-value=2.3e-53  Score=356.94  Aligned_cols=182  Identities=53%  Similarity=0.891  Sum_probs=166.8

Q ss_pred             cCCCCCCCChhhhhhhHHHHHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcce
Q 046151           27 HLAIPSGVTQDEFDELKQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGS  106 (209)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGs  106 (209)
                      +..+|+|||++|+..|.++|++||+|+|+||||+++++++|+||+++||++|+||++++.|+|+|++|++++|+ |++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGd-g~vGs   81 (190)
T 3kl1_A            3 SSPAVKGLTDEEQKTLEPVIKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGD-GDVGS   81 (190)
T ss_dssp             -------CCHHHHHHHHHHHHHHSCCCCCTTEEEEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESS-SSTTC
T ss_pred             CCCCCCcCCHHHHhhhhHHHHHHhccCCCCCceeEEEEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCC-CCCCe
Confidence            44689999999999999999999999999999999999999999999999999999999999999999999997 68999


Q ss_pred             EEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecccCccceEEEEEEEeecC--CCCceEEEEEEeeecCCCCCCHHH
Q 046151          107 TRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNR--DGAICTVVLESYVVDVPEGNTEED  184 (209)
Q Consensus       107 vR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~--~g~~~T~v~~s~~~d~P~g~~~e~  184 (209)
                      ||.|+|.+|+|+++++|||+.+|+++|+|+|+|++|++|+++|+|++++.++..  ++..+|+|.|++.|++|+|+++++
T Consensus        82 VR~~t~~~G~p~~~vkErL~~iD~~~~~~sY~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~~~e~  161 (190)
T 3kl1_A           82 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEED  161 (190)
T ss_dssp             EEEEEECSSSSCEEEEEEEEEEETTTTEEEEEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTCCHHH
T ss_pred             EEEEEecCCCccceEEEEEEEEeccCCEEEEEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCCCHHH
Confidence            999999999998999999999999999999999999999999999999998743  233579999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC
Q 046151          185 TRLFADTVVKLNLQKLVSVAESQVI  209 (209)
Q Consensus       185 a~~~i~~v~k~gL~~Lk~~~E~~~~  209 (209)
                      ++.|++++|++||++||+++|+++.
T Consensus       162 ~~~~~~~~~~~gL~~L~~~~e~~~~  186 (190)
T 3kl1_A          162 TKMFVDTVVKLNLQKLGVAATSAPM  186 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999863

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=100.00  E-value=2.6e-50  Score=336.80  Aligned_cols=169  Identities=47%  Similarity=0.806  Sum_probs=154.7

Q ss_pred             hhhhH-HHHHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCC
Q 046151           39 FDELK-QSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLP  117 (209)
Q Consensus        39 ~~~~~-~~~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p  117 (209)
                      +..++ ++|++||+|+|+||||+++++++|+||+++||++|+||++++.|+|+|++| ..+|+++++|+||.|+|.+|.|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~~G~p   84 (183)
T 3rt2_A            6 TKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRC-VVQGKKLEVGSVREVDLKSGLP   84 (183)
T ss_dssp             ----CCHHHHHHSCCCCSTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEE-EESSSCCCTTCEEEEEECCSST
T ss_pred             cceechHHHHHhhccCCCCCceEEEEEEEEeCCHHHHHHHHhCcCchhhcCccceEE-EeeCCCCCCCcEEEEEeCCCCc
Confidence            44445 899999999999999999999999999999999999999999999999999 4567557999999999999989


Q ss_pred             cceeeEeeceecCCCCEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHH
Q 046151          118 AATSTERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNL  197 (209)
Q Consensus       118 ~~~~~ErLd~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL  197 (209)
                      .++++|||+.+|+++|+|+|+|++|++|+++|+++++|+|.+.+|..+|+|.|++.||+|+|+++++++.|++++|++||
T Consensus        85 ~~~vkErL~~~D~~~~~~sY~Iieg~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~~e~~~~~~~~i~~~~L  164 (183)
T 3rt2_A           85 ATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNL  164 (183)
T ss_dssp             TCEEEEEEEEEETTTTEEEEEEEEESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEEECCCCEEEEEEecCCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999997623323699999999999999999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 046151          198 QKLVSVAESQV  208 (209)
Q Consensus       198 ~~Lk~~~E~~~  208 (209)
                      ++||+++|+++
T Consensus       165 ~~L~~~~e~~~  175 (183)
T 3rt2_A          165 NSLADVTERLQ  175 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999975

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=100.00  E-value=1.5e-49  Score=337.63  Aligned_cols=164  Identities=49%  Similarity=0.809  Sum_probs=155.7

Q ss_pred             HHHHHhhhcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceee
Q 046151           43 KQSVVEFHTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATST  122 (209)
Q Consensus        43 ~~~~~~~h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~  122 (209)
                      .++|++||+|+|+||||+++++++|+|||++||++|+||+++++|+|+|++|++ +|+ +++|+||.|+|.+|.|+++++
T Consensus        36 ~~~~~~~~~h~p~~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~ev-eGd-g~vGsVR~vt~~~G~p~~~vk  113 (205)
T 3oqu_A           36 VQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGD-PEIGSLREVNVKSGLPATTST  113 (205)
T ss_dssp             CCHHHHHTCCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEC-CSS-CCTTCEEEEEECTTSSCSEEE
T ss_pred             cHHHHHHHhcCCCCcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEe-eCC-CCCCcEEEEEEcCCCccceEE
Confidence            389999999999999999999999999999999999999999999999999987 575 699999999999999999999


Q ss_pred             EeeceecCCCCEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 046151          123 ERLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVS  202 (209)
Q Consensus       123 ErLd~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~  202 (209)
                      |||+++|+++|+|+|+|++|++|+++|+++++|.|.+++|..+|+++|+|.+|+|+|+++++++.|++++|++||++||+
T Consensus       114 ErL~~lDde~~~~sYsIieG~lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~t~e~~~~~v~~v~~~gL~~L~~  193 (205)
T 3oqu_A          114 ERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLAD  193 (205)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSSCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEecCcceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999876555589999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q 046151          203 VAESQV  208 (209)
Q Consensus       203 ~~E~~~  208 (209)
                      ++|+|+
T Consensus       194 ~~e~~~  199 (205)
T 3oqu_A          194 VSERLA  199 (205)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999975

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=100.00  E-value=4.3e-32  Score=216.60  Aligned_cols=133  Identities=20%  Similarity=0.316  Sum_probs=121.4

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      +++|+|||++||++|+||++++.|.|+|++|++.+|     |++|.|+|.+|   .+++|||+.+|+++++|+|+|++|+
T Consensus         7 si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~G-----G~vR~~~~~~G---~~~~Erl~~~D~~~~~~~y~iv~g~   78 (146)
T 3f08_A            7 SMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLANPDG---ETIIERLEVFNDKERYYTYSIMNAP   78 (146)
T ss_dssp             EEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEGG-----GTEEEEECTTS---CEEEEEEEEEETTTTEEEEEEEECS
T ss_pred             EEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeCC-----CeEEEEEeCCC---CEEEEEEEEEeCCCCEEEEEEecCC
Confidence            468999999999999999999999999999999864     99999999877   5899999999999999999999999


Q ss_pred             cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +|+++|.++++|.|...++  +|++.|++.|+ |+|..++.++++++++|++||++||+.+|.+
T Consensus        79 ~~~~~~~~~~~v~p~~~~~--gt~v~w~~~~~-p~g~~~~~~~~~~~~~~~~~L~~Lk~~~e~~  139 (146)
T 3f08_A           79 FPVTNYLSTIQVKEGTESN--TSLVEWSGTFT-PVAVSDEEAINLVHGIYSDGLKALQHAFLDL  139 (146)
T ss_dssp             SSEEEEEEEEEEEECSSTT--CEEEEEEEEEE-ESSSCHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CceeEEEEEEEEEEecCCC--cEEEEEEEEEE-eCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999843333  48999999998 5888899999999999999999999999986

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.97  E-value=1.4e-29  Score=205.84  Aligned_cols=131  Identities=18%  Similarity=0.180  Sum_probs=117.2

Q ss_pred             eEEEecChHHHHHHhhcCCCCCcccccccee-EEccCCC-CCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSC-SVSDNFT-MAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~-e~~eGd~-g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      +++|+|||++||++|+||+++ .|.|.+.+| ++.+|++ +++|+||.|    |   ++++|||+.+|+++|+|+|+|++
T Consensus         7 si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~----g---g~v~Erl~~~D~~~~~~sY~ii~   78 (160)
T 3p51_A            7 SIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL----N---GEFLDTLIAYSEIERRIMYSMDE   78 (160)
T ss_dssp             EEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE----T---TTEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE----C---CEEEEEEEEEcCCCcEEEEEEec
Confidence            468999999999999999999 999999888 9988863 589999998    3   37999999999999999999999


Q ss_pred             cccC-----ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          142 GEHR-----LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       142 G~~p-----~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      |++|     +++|.++++|.|.++++  +|++.|++.|++++    +.++.+++++|++||++||+.+|+..
T Consensus        79 g~l~~~~~~~~~y~~~~~v~p~~~~g--gt~V~w~~~~~~~~----~~~~~~~~~~~~~~L~~Lk~~~e~~~  144 (160)
T 3p51_A           79 GPSPVSSGEIYNYVGNLHLLPVTIDD--TTFVEWSGSWESAS----TEAVEYMNTVYRSLLADLAAEFTSES  144 (160)
T ss_dssp             CSTTSSTTTEEEEEEEEEEEEETTTT--EEEEEEEEEEEESC----SHHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred             CCCcccccceeEEEEEEEEEEecCCC--CEEEEEEEEEEeCH----HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999     99999999999986333  59999999998764    27889999999999999999999864

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.95  E-value=5.6e-28  Score=197.45  Aligned_cols=126  Identities=14%  Similarity=0.151  Sum_probs=109.8

Q ss_pred             cCCCCCCceeeEEeEEEecChHHHHHH-hhcCCCCCcccc-ccceeEEccCCCCCcceEEEEEeecCCCcceeeEeecee
Q 046151           51 TYQLSQNQCSSLLAQRIRAPNDVVWSI-VRRFDQPQTYKH-FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDIL  128 (209)
Q Consensus        51 ~h~~~~~~~~~~v~~~I~APa~~VW~v-VrdF~~~~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~l  128 (209)
                      .|++++++++..+  +|+|||++||++ ++||+.++.|.| +|++|++++|++|++||||.|+|..|++..+++|||+.+
T Consensus        11 ~~~~~~~k~~~ev--~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~~kErl~~i   88 (166)
T 2i9y_A           11 EASSLVGKLETDV--EIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAV   88 (166)
T ss_dssp             CCSSSEEEEEEEE--EESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEEEEEEEEEE
T ss_pred             cccCCccEEEEEE--EecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceEEEEEEEEE
Confidence            3578888888884  799999999999 458999889998 999999999987899999999999998888999999999


Q ss_pred             cCCCCEEEEEEeeccc--CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC
Q 046151          129 DDDRQVTGFSIIGGEH--RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN  180 (209)
Q Consensus       129 Dd~~~~~sY~iieG~~--p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~  180 (209)
                      |+++++|+|+|++|++  ++++|.++++|.|.++++  +|++.|+..|+...++
T Consensus        89 D~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~--gs~v~wt~~ye~~~~~  140 (166)
T 2i9y_A           89 EPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGP--GSIVHWHLEYEKISEE  140 (166)
T ss_dssp             ETTTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETT--EEEEEEEEEEEESSTT
T ss_pred             eccCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCC--CcEEEEEEEEEECCCC
Confidence            9999999999999998  578889999999875432  5899999998754443

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=99.95  E-value=1e-26  Score=188.12  Aligned_cols=112  Identities=16%  Similarity=0.265  Sum_probs=97.3

Q ss_pred             EeEEEecChHHHHHH-hhcCCCC-Ccccc-ccceeEEccCCCCCcceEEEEEeecC-CCcceeeEeeceecCCCCEEEEE
Q 046151           63 LAQRIRAPNDVVWSI-VRRFDQP-QTYKH-FIKSCSVSDNFTMAVGSTRDVNVISG-LPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        63 v~~~I~APa~~VW~v-VrdF~~~-~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~~G-~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      ...+|+|||++||++ ++||+++ +.|.| .|++|++++|+ |++||||.|+|.+| .| ++++|||+.+|+++|+|+|+
T Consensus         7 ~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGd-gg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~~~~~~y~   84 (155)
T 2flh_A            7 TQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGD-GGVGTILIFNFLPEVSP-SYQREEITEFDESSHEIGLQ   84 (155)
T ss_dssp             EEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECS-SSTTCEEEEEECTTSSS-CEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCC-CCCCeEEEEEeeCCCCC-cEEEEEEEEEeCCCCEEEEE
Confidence            346899999999999 8999996 67776 77999998897 68999999999998 77 89999999999999999999


Q ss_pred             Eeeccc---CccceEEEEEEEeecCCCCceEEEEEEeeecCCCC
Q 046151          139 IIGGEH---RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG  179 (209)
Q Consensus       139 iieG~~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g  179 (209)
                      |++|++   ++++|+++++|.|.+++   +|++.|+..|++..+
T Consensus        85 iieg~~l~~~~~~~~~~i~v~p~~~g---gs~v~wt~~y~~~~~  125 (155)
T 2flh_A           85 VIEGGYLSQGLSYYKTTFKLSEIEED---KTLVNVKISYDHDSD  125 (155)
T ss_dssp             EEEEGGGGTTCSEEEEEEEEEEEETT---EEEEEEEEEEEC---
T ss_pred             EEeccccccCceEEEEEEEEEECCCC---CEEEEEEEEEEECCC
Confidence            999986   69999999999997643   489999999875444

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=99.94  E-value=7e-27  Score=190.22  Aligned_cols=113  Identities=12%  Similarity=0.118  Sum_probs=98.7

Q ss_pred             EeEEEecChHHHHHHh-hcCCC-CCcccc-ccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEE
Q 046151           63 LAQRIRAPNDVVWSIV-RRFDQ-PQTYKH-FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSI  139 (209)
Q Consensus        63 v~~~I~APa~~VW~vV-rdF~~-~~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~i  139 (209)
                      ...+|+|||++||+++ +||++ .+.|.| +|++|++++|+ |++|+||.|+|.+|+|.++++|||+.+|+++|+|+|+|
T Consensus         7 ~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGd-gg~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~~~y~i   85 (159)
T 4a8u_A            7 TEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGN-GGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSV   85 (159)
T ss_dssp             EEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECS-SSTTCEEEEECCTTSSCSEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCC-CCCceEEEEEEecCCCccEEEEEEEEEccccCEEEEEE
Confidence            3468999999999998 99999 456665 79999999997 57999999999999998999999999999999999999


Q ss_pred             eecccC---ccceEEEEEEEeecCCCCceEEEEEEeeecCCCC
Q 046151          140 IGGEHR---LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG  179 (209)
Q Consensus       140 ieG~~p---~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g  179 (209)
                      ++|+++   +++|+++++|.|.+++   +|++.|+..|+...+
T Consensus        86 iegd~l~~~~~~y~~ti~v~p~~~g---gs~v~wt~~y~~~~~  125 (159)
T 4a8u_A           86 IEGGPVGDTLEKISNEIKIVATPNG---GSILKINNKYHTKGD  125 (159)
T ss_dssp             EEETTCBTTEEEEEEEEEEEECTTS---CEEEEEEEEEEESSS
T ss_pred             eeCCCCccceEEEEEEEEEEECCCC---ceEEEEEEEEEECCC
Confidence            999974   7999999999986543   488999999875433

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.94  E-value=6.5e-27  Score=184.04  Aligned_cols=137  Identities=19%  Similarity=0.238  Sum_probs=120.4

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeecc
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGE  143 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~  143 (209)
                      +.+|+||+++||+++.||++.+.|.|.|++|++.+|+++++|++|.+++.+|   ..++|+|+.+|+.+++|+|++++|+
T Consensus         7 si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~~~~~G---~~~~e~i~~~d~~~~~~~~~~~~g~   83 (151)
T 2le1_A            7 SVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTE---EELVERLVERDESARRLVYTMPDPP   83 (151)
T ss_dssp             EEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEESSSSS---SCEEEEEEEEETTTTEEEEEEEECS
T ss_pred             EEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEEEeCCC---CEEEEEEEEEeCCCCEEEEEEecCC
Confidence            4689999999999999999999999999999999876678999999999766   4799999999999999999999999


Q ss_pred             cCccceEEEEEEEeecCCCCceEEEEEEeeecC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          144 HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDV-PEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       144 ~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~-P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +|+.+|.++++|.|.. ++  +|.+.|...|++ |.+.....+. ++..+|+.||++||+.+|+.
T Consensus        84 ~~~~~~~~~~~l~~~~-~~--gt~v~w~~~f~~~p~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~  144 (151)
T 2le1_A           84 FPITNHRAVLEVVPRD-DR--HCTVVWTAMFDCSPETARELESV-IGDGVFAVGLNALAERYGRL  144 (151)
T ss_dssp             SSEEEEEEEEEEEESS-SS--CEEEEEEEEEEECHHHHHHHHHH-TTTTHHHHHHHHHHHHTTTT
T ss_pred             CCceeEEEEEEEEECC-CC--cEEEEEEEEEEecCCCCCHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence            8999999999999843 22  489999988886 5655555566 88999999999999999985

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=99.94  E-value=8.7e-26  Score=182.59  Aligned_cols=137  Identities=13%  Similarity=0.105  Sum_probs=109.0

Q ss_pred             eEEEecChHHHHHHhh-cCCC-CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           64 AQRIRAPNDVVWSIVR-RFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        64 ~~~I~APa~~VW~vVr-dF~~-~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      ..+|+|||++||++++ ||++ .+.|.|+|++|++++|+ |++|+||.|+|.+|.|+.+++|||+.+|+++|+|+|+|++
T Consensus         8 e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~-g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~~~y~iie   86 (157)
T 1tw0_A            8 ETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGN-GGVGTIKKITANEGDKTSFVLQKVDAIDEANLGYDYSIVG   86 (157)
T ss_dssp             EEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESS-SSTTCEEEEEEEETTEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCC-CCCCeEEEEEeeCCCccceEEEEEEEEeccCCEEEEEEEe
Confidence            3579999999999999 9986 46777999999999997 5899999999999988789999999999999999999999


Q ss_pred             cccC---ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Q 046151          142 GEHR---LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       142 G~~p---~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      |++.   +++|.++++|.|.+++   +|++.|+..|++..+.. .++..+.+...+...++.|.+.+
T Consensus        87 Gd~~~~~~~~~~~~~~v~~~~~~---gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl  150 (157)
T 1tw0_A           87 GTGLPESLEKLSFETKVVAGSGG---GSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYV  150 (157)
T ss_dssp             CTTSCTTEEEEEEEEEEEECSSS---SEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccceEEEEEEEEEEecCCC---CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9863   7899999999986543   38899999988655543 22222233344555555555543

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=99.94  E-value=2.5e-26  Score=185.96  Aligned_cols=137  Identities=9%  Similarity=0.098  Sum_probs=109.0

Q ss_pred             eEEEecChHHHHHHhh-cCCC-CCcccc-ccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSIVR-RFDQ-PQTYKH-FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~vVr-dF~~-~~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      ..+|+|||++||++++ ||++ .+.|+| +|++|++++|+ +++||||.|+|.+|.|+++++|||+.+|+++|+|+|+|+
T Consensus         8 e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGd-gg~Gsvr~~~~~~G~~~~~~kErl~~~D~~~~~~~y~ii   86 (159)
T 1e09_A            8 EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGD-GGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLI   86 (159)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEECCSSSCEEEEEEEEEEETTTTEEEEEEC
T ss_pred             EEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCC-CCCceEEEEEecCCCCceEEEEEEEEEcCCCCEEEEEEE
Confidence            3579999999999999 9986 477887 89999999996 589999999999998878999999999999999999999


Q ss_pred             eccc---CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Q 046151          141 GGEH---RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       141 eG~~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      +|++   ++++|+++++|.|.+++   +|++.|+..|++..+.. +++..++....+...++.|.+.+
T Consensus        87 eG~~~~~~~~~~~~~~~v~~~~~~---gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl  151 (159)
T 1e09_A           87 EGDALGDTLEKISYETKLVASPSG---GSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYL  151 (159)
T ss_dssp             CCTTTGGGEEEEEEEEEECCCTTS---SEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccCcccceEEEEEEEEEecCCC---CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997   78999999999986543   38899999988654443 22222233334555555554433

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=99.94  E-value=2.5e-26  Score=188.59  Aligned_cols=114  Identities=11%  Similarity=0.131  Sum_probs=99.4

Q ss_pred             eEEeEEEecChHHHHHH-hhcCCCC-Ccccc-ccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151           61 SLLAQRIRAPNDVVWSI-VRRFDQP-QTYKH-FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~v-VrdF~~~-~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      -....+|+|||++||++ ++||+++ +.|+| +|++|++++|+ |++||||.|+|.+|+|.++++|||+.+|+++|+|+|
T Consensus        12 ~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~iD~~~~~~~Y   90 (165)
T 3ie5_A           12 IVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGD-GGVGTVTKITFVDGHPLTYMLHKFDEIDAANFYCKY   90 (165)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEECTTSSCCEEEEEEEEEEGGGTEEEE
T ss_pred             EEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCC-CCCCeEEEEEecCCCCCceEEEEEEEEchhcCEEEE
Confidence            33446899999999999 6999996 78887 69999998897 799999999999999988999999999999999999


Q ss_pred             EEeeccc---CccceEEEEEEEeecCCCCceEEEEEEeeecCCCC
Q 046151          138 SIIGGEH---RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG  179 (209)
Q Consensus       138 ~iieG~~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g  179 (209)
                      +|++|++   ++++|+++++|. .. +|  +|++.|+..|++..+
T Consensus        91 ~iieG~~l~~~~~~y~~~i~v~-~~-~g--gs~vkwt~~y~~~~~  131 (165)
T 3ie5_A           91 TLFEGDVLRDNIEKVVYEVKLE-AV-GG--GSKGKITVTYHPKPG  131 (165)
T ss_dssp             EEEEEGGGTTTEEEEEEEEEEE-EE-TT--EEEEEEEEEEEECTT
T ss_pred             EEecCCCCccceEEEEEEEEEE-eC-CC--ceEEEEEEEEEECCC
Confidence            9999985   499999999998 33 33  589999999985444

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=99.94  E-value=3e-26  Score=184.74  Aligned_cols=137  Identities=14%  Similarity=0.083  Sum_probs=109.8

Q ss_pred             eEEEecChHHHHHHhh-cCCC-CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           64 AQRIRAPNDVVWSIVR-RFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        64 ~~~I~APa~~VW~vVr-dF~~-~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      ..+|+|||++||++++ ||++ .+.|.|+|++|++++|+ |++|+||.|+|.+|.|+.+++|||+.+|+++|+|+|+|++
T Consensus         8 e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~-g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~~~y~iie   86 (155)
T 1icx_A            8 EQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-GGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIG   86 (155)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESS-SSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             EEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecC-CCCCeEEEEEEecCCcceeEEEEEEEEeccCCEEEEEEEe
Confidence            3579999999999999 9986 36677999999999997 5899999999999988889999999999999999999999


Q ss_pred             cccC---ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046151          142 GEHR---LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       142 G~~p---~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      |++.   +++|+++++|.|.+++   +|++.|+..|++..+...++..+.+...+...++.|.+.+
T Consensus        87 Gd~~~~~~~~~~~~~~v~~~~~~---gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl  149 (155)
T 1icx_A           87 GEGLDESLEKISYESKILPGPDG---GSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYV  149 (155)
T ss_dssp             ETTSCTTEEEEEEEEEEEECGGG---CEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCccceEEEEEEEEEEecCCC---CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9863   7899999999986543   3889999988765444222222233445666666666544

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=99.93  E-value=3.5e-26  Score=193.40  Aligned_cols=113  Identities=15%  Similarity=0.218  Sum_probs=98.1

Q ss_pred             EEeEEEecChHHHHHH-hh-cCCCC-Ccccc-ccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151           62 LLAQRIRAPNDVVWSI-VR-RFDQP-QTYKH-FIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        62 ~v~~~I~APa~~VW~v-Vr-dF~~~-~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      +...+|+|||++||++ ++ ||+++ +.|.| +|++|+++ |+ |++||||.|+|.+|+|+.+++|||+.+|+++|+|+|
T Consensus        32 ~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-Gd-Gg~GsIR~lt~~~G~~~~~vkErle~iDde~~~~sY  109 (201)
T 2vq5_A           32 HHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GD-GGVGTILDMTFVPGEFPHEYKEKFILVDNEHRLKKV  109 (201)
T ss_dssp             EEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SS-SSTTCEEEEECCTTCSSCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cC-CCCCeEEEEEecCCCcccEEEEEEEEEchhhCEEEE
Confidence            3456899999999999 68 99996 67887 67999999 87 689999999999998888999999999999999999


Q ss_pred             EEeeccc---CccceEEEEEEEeecCCCCceEEEEEEeeecCCCC
Q 046151          138 SIIGGEH---RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG  179 (209)
Q Consensus       138 ~iieG~~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g  179 (209)
                      +|++|++   ++++|+++++|.|.+++   +|++.|+..|++..+
T Consensus       110 siieGd~l~~~~~~y~~tikv~p~~dg---gs~vkWt~~ye~~~~  151 (201)
T 2vq5_A          110 QMIEGGYLDLGVTYYMDTIHVVPTGKD---SCVIKSSTEYHVKPE  151 (201)
T ss_dssp             EEEEEGGGGTTEEEEEEEEEEEEEETT---EEEEEEEEEEEECGG
T ss_pred             EEEecCccccceeEEEEEEEEEECCCC---CeEEEEEEEEEECCC
Confidence            9999984   69999999999997543   488999888874433

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=99.93  E-value=1e-25  Score=182.16  Aligned_cols=137  Identities=11%  Similarity=0.093  Sum_probs=109.3

Q ss_pred             eEEEecChHHHHHHhh-cCCC-CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           64 AQRIRAPNDVVWSIVR-RFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        64 ~~~I~APa~~VW~vVr-dF~~-~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      ..+|+|||++||++++ ||++ .+.|.|.|++|++++|+ |++||||.|+|.+|.|+.+++|||+.+|+++|+|+|+|++
T Consensus         9 e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGd-gg~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~iie   87 (158)
T 2qim_A            9 EYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGN-GGPGTIKKLTFIEGGESKYVLHKIEAIDEANLGYNYSIVG   87 (158)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESS-SSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             EEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecC-CCCCeEEEEEEcCCCcceeEEEEEEEEecCCCEEEEEEEe
Confidence            3579999999999999 9986 36677999999999997 5899999999999988788999999999999999999999


Q ss_pred             cccC---ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Q 046151          142 GEHR---LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       142 G~~p---~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      |++.   +++|.++++|.|.+++   +|++.|...|++..+.. .++..+.....+...++.|.+.+
T Consensus        88 G~~~~~~~~~~~~~~~v~~~~~~---gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl  151 (158)
T 2qim_A           88 GVGLPDTIEKISFETKLVEGANG---GSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYL  151 (158)
T ss_dssp             ESSCCCSEEEEEEEEEEEECSTT---CEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccceEEEEEEEEEEecCCC---CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9863   7799999999986543   38999999998665543 22222233344555555555543

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=99.91  E-value=4.8e-24  Score=173.14  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=91.9

Q ss_pred             EEEecChHHHHHH-hhcCCC--CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           65 QRIRAPNDVVWSI-VRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        65 ~~I~APa~~VW~v-VrdF~~--~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      .++++||+++|.+ ++||++  |+.+|++|++|++ +|+ |++|+||.|+|.+|+|..+++|||+.+|+++|+|+|+|++
T Consensus        10 ~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~v-eGd-g~~Gsir~~t~~~g~~~~~~kErle~iD~~~~~~~y~iie   87 (154)
T 2wql_A           10 ITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGD-GGAGTVRIITLPEGSPITTMTVRTDAVNKEALSYDSTVID   87 (154)
T ss_dssp             EEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEE-ESS-SSTTCEEEEECCTTCSCCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEecCCHHHHHHHHhhcccccchhhcccceeEEEE-ECC-CCCCeEEEEEEcCCCCceEEEEEEEEEehhhCEEEEEEEe
Confidence            5799999999975 789998  6778889999996 675 6899999999999999999999999999999999999999


Q ss_pred             ccc---CccceEEEEEEEeecCCCCceEEEEEEeeec
Q 046151          142 GEH---RLRNYRSVTSVHGFNRDGAICTVVLESYVVD  175 (209)
Q Consensus       142 G~~---p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d  175 (209)
                      |++   ++++|+++++|.|.+++   +|++.|+..++
T Consensus        88 Gd~l~~~~~~~~~~ikv~p~~~g---gsvvk~t~~Y~  121 (154)
T 2wql_A           88 GDILLGFIESIETHMVVVPTADG---GSITKTTAIFH  121 (154)
T ss_dssp             SGGGTTTEEEEEEEEEEEECTTS---CEEEEEEEEEE
T ss_pred             ccccccceEEEEEEEEEeeCCCC---cEEEEEEEEEE
Confidence            985   57888889999987544   37788877775

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.75  E-value=1.8e-17  Score=133.43  Aligned_cols=143  Identities=9%  Similarity=-0.000  Sum_probs=110.2

Q ss_pred             hcCCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceec
Q 046151           50 HTYQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILD  129 (209)
Q Consensus        50 h~h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lD  129 (209)
                      .+|||++++.+.++  +|+|||++||+++.||.+.+.|.|.|.++++. |. -.+|+.+.+++..|   ..++++|..+|
T Consensus        11 ~~~g~~~~~i~~si--~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~~-G~-~~~G~~~~~~~~~~---~~~~~~v~~~~   83 (155)
T 3ijt_A           11 QQMGRGSMKFSFEL--AVNTKKEDAWTYYSQVNQWFVWEGDLEQISLE-GE-FTTGQKGKMKMEDM---PELAFTLVEVR   83 (155)
T ss_dssp             ----CCCEEEEEEE--EESSCHHHHHHHHHCGGGGGGTSTTEEEEEES-SS-SSTTCEEEEEETTS---CCEEEEECCCB
T ss_pred             cccCCCcEEEEEEE--EEcCCHHHHHHHHhCcccccccchhhEeeecc-CC-CCCCCEEEEEeCCC---CcEEEEEEEEe
Confidence            45999999999885  79999999999999999999999999999875 43 38999999998655   36789999999


Q ss_pred             CCCCEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          130 DDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN-TEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       130 d~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~-~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +..+ ++|+.   .+|+..|.....|.|..++   +|.+.|...++-+... ..-.+.+.+...|..+|++||+.+|+
T Consensus        84 p~~~-~~~~~---~~p~~~~~~~h~l~p~~~g---gTrvt~~~~~~G~~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~  154 (155)
T 3ijt_A           84 ENQC-FSDLT---ATPFGNVLFEHEILENPDG---TISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILET  154 (155)
T ss_dssp             TTTE-EEEEE---EETTEEEEEEEEEEECTTS---CEEEEEEEEESCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             CCcE-EEEEE---ecCCeEEEEEEEEEEcCCC---cEEEEEEEEEECCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8876 77764   3566677777788875433   4889898888533321 12234578888899999999999996

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.60  E-value=1.5e-14  Score=118.01  Aligned_cols=134  Identities=8%  Similarity=0.047  Sum_probs=101.3

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEE-EEE---eecCCCcceeeEeeceecCCCCEEEEEE
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTR-DVN---VISGLPAATSTERLDILDDDRQVTGFSI  139 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR-~lt---~~~G~p~~~~~ErLd~lDd~~~~~sY~i  139 (209)
                      +..|+|||++||.+|.||.+.+.|.|.+.++++.++++   +.+| .+.   ..+|....+..++  .+|+.+++|+|+.
T Consensus         8 si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~---~~~~~~l~~~~~~~G~~~~~ts~~--~~d~~~~~I~~~~   82 (169)
T 3tvq_A            8 SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDG---DGFDFRLKTRPDANGRVWEWVSHR--VPDKGSRTVRAHR   82 (169)
T ss_dssp             EEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEET---TEEEEEEEECCCTTSCCCEEEEEE--EEEGGGTEEEEEE
T ss_pred             EEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCC---CEEEEEEEEEecCCCeEEEEEEEE--EEcCCCcEEEEEE
Confidence            46799999999999999999999999999999987642   2333 233   1233322233444  3799999999998


Q ss_pred             eecccCccceEEEEEEEeecCCCCceEEEEEEeee--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          140 IGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVV--DVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       140 ieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~--d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +.+. |++.|.++.++.|.++    +|.|.|...|  .++.+..++.....++..++.+|++||+.+|+.
T Consensus        83 l~~g-Pf~~~~g~W~f~p~~~----gt~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~  147 (169)
T 3tvq_A           83 VETG-PFAYMNLHWTYRAVAG----GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDR  147 (169)
T ss_dssp             SSCT-TEEEEEEEEEEEEETT----EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-ChhheeeEEEEEECCC----CEEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            6544 8999999999998743    2677775444  444455677788999999999999999999984

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.60  E-value=2.3e-14  Score=115.78  Aligned_cols=138  Identities=12%  Similarity=0.015  Sum_probs=103.4

Q ss_pred             eeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEE--e-ecCCCcceeeEeeceecCCCCEE
Q 046151           59 CSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVN--V-ISGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        59 ~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt--~-~~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      .+.+  .+|+|||++||.+|.||.+.+.|.|.+.++++.+++ +..-.+| ++  . ..|....+..++  .+|+.+++|
T Consensus         5 v~~s--i~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~-~~~~~~r-l~~~~~~~G~~~~~ts~~--~~d~~~~~I   78 (159)
T 3tl1_A            5 TDNE--ITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRD-DDKVTFR-LTMHPDADGKVWSWVSER--VADPVTRTV   78 (159)
T ss_dssp             EEEE--EEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEEC-SSEEEEE-EEECCCTTSCCCEEEEEE--EEETTTTEE
T ss_pred             eEEE--EEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecC-CCEEEEE-EEEEeccCceEEEEEEEE--EEcCCCCEE
Confidence            4444  579999999999999999998999999999988764 2222334 43  2 234332333344  579999999


Q ss_pred             EEEEeecccCccceEEEEEEEeecCCCCceEEEEEEe--eecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          136 GFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESY--VVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       136 sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~--~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +|+++... |++.|.+..++.|.++    +|.|.|..  .+.+..+..++.+.+.++..++.+|++||+.+|+.
T Consensus        79 ~~~~~~~g-Pf~~l~g~W~f~p~~~----gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~  147 (159)
T 3tl1_A           79 RAQRVETG-PFQYMNIVWEYAETAE----GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQA  147 (159)
T ss_dssp             EEEESSCT-TEEEEEEEEEEEEETT----EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCC-ChhhccCEEEEEECCC----CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            99988433 7999999999998643    37777764  44444555667788899999999999999999974

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.51  E-value=1.1e-13  Score=107.69  Aligned_cols=103  Identities=11%  Similarity=0.130  Sum_probs=74.4

Q ss_pred             CceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEE
Q 046151           57 NQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTG  136 (209)
Q Consensus        57 ~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~s  136 (209)
                      ++++..  .+|+|||++||+++++|+.++ |.              .+          |.      +||+.+|++|++|+
T Consensus         5 g~~~~e--~~i~~~a~k~w~~~~~~~~~p-~g--------------~~----------G~------~~ie~iD~~~~~~~   51 (122)
T 1vjh_A            5 GALSVK--FDVKCPADKFFSAFVEDTNRP-FE--------------KN----------GK------TEIEAVDLVKKTMT   51 (122)
T ss_dssp             EEEEEE--EEESSCHHHHHHHHHHHTTSC-SS--------------TT----------CE------EEEEEEETTTTEEE
T ss_pred             cEEEEE--EEecCCHHHHHHHHhhcccCC-cc--------------CC----------Cc------cEEEEEecccCEEE
Confidence            345555  579999999999999986654 42              22          31      29999999999999


Q ss_pred             EEEeecccC--ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC--HHHHHHHHHHHHH
Q 046151          137 FSIIGGEHR--LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT--EEDTRLFADTVVK  194 (209)
Q Consensus       137 Y~iieG~~p--~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~--~e~a~~~i~~v~k  194 (209)
                      |++++|+++  +++|+++++|.|.++++  +|++.|...|+...++.  .+....++..+||
T Consensus        52 y~iieGd~~~~~~~~~~~~~v~~~~~~~--gs~vkwt~~ye~~~~~~~~p~~~~~~~~~~~k  111 (122)
T 1vjh_A           52 IQMSGSEIQKYFKTLKGSIAVTPIGVGD--GSHVVWTFHFEKVHKDIDDPHSIIDESVKYFK  111 (122)
T ss_dssp             EEEECTTGGGTEEEEEEEEEEEECSSSS--CEEEEEEEEEEESSTTSCCSHHHHHHHHHHHH
T ss_pred             EEEEEccccccEEEEEEEEEEEEecCCC--CeEEEEEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            999999985  79999999999864233  48899988886433322  2344455555554

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.49  E-value=7.5e-13  Score=99.23  Aligned_cols=137  Identities=13%  Similarity=0.087  Sum_probs=98.0

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      .+.+|+||+++||+++.|+.+.+.|.|.+.++++.+++  ..|....+++..++-....+.++. .++.++.+.|++++|
T Consensus         6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~--~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~~g   82 (147)
T 2d4r_A            6 AERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVARE--GARTRSRWVAVAMGKKVRWLEEEE-WDDENLRNRFFSPEG   82 (147)
T ss_dssp             EEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEE--TTEEEEEEEEEETTEEEEEEEEEE-EETTTTEEEEEEEEE
T ss_pred             EEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeC--CCccEEEEEEEeCCceEEEEEEEE-EcCCCcEEEEEeccC
Confidence            34689999999999999999999999999999987653  225555666543321112344443 356778999999888


Q ss_pred             ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN----TEEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~----~~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      ++  ..+..+.++.|.+ +   +|.+.|...++++-+.    ........+...++..|++||+.+|+.+
T Consensus        83 ~~--~~~~~~~~~~~~~-~---gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~~  146 (147)
T 2d4r_A           83 DF--DRYEGTWVFLPEG-E---GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS  146 (147)
T ss_dssp             SC--SEEEEEEEEEECS-S---SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             Ch--hheEEEEEEEECC-C---CcEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            54  6678888888753 2   2778787777654221    2333446777889999999999999864

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.47  E-value=9.5e-13  Score=106.01  Aligned_cols=141  Identities=13%  Similarity=0.090  Sum_probs=98.9

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      -..+++|+||+++||++|.||.+.+.|.|.+.++++.+++++. -.+| +++..++-....+.+ ..+|+.++.+.|+++
T Consensus         7 v~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~-~~~~-~~~~~~G~~~~~~s~-~~~~~~~~~i~~~~~   83 (172)
T 3tfz_A            7 VEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGY-QVVR-LHVDVAGEINTWTSR-RDLDPARRVIAYRQL   83 (172)
T ss_dssp             EEEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTE-EEEE-EEEEETTEEEEEEEE-EEEETTTTEEEEEEE
T ss_pred             EEEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCE-EEEE-EEEecCCEEEEEEEE-EEEeCCCCEEEEEEe
Confidence            3445689999999999999999999999999999998664211 1223 333323211112222 347888999999999


Q ss_pred             ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC-------------CHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN-------------TEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~-------------~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +++.|++.+....++.|.+++   +|.|.|...|+.+.+.             ........++.-++..|++||+.+|+.
T Consensus        84 ~~~gpf~~~~g~w~f~~~~~~---~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE~~  160 (172)
T 3tfz_A           84 ETAPIVGHMSGEWRAFTLDAE---RTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERR  160 (172)
T ss_dssp             ECCTTEEEEEEEEEEEEEETT---EEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCChhhcEEEEEEEECCCC---cEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            877788899988899987533   4788887666543322             112234566677788999999999974

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.07  E-value=4.1e-09  Score=81.79  Aligned_cols=138  Identities=10%  Similarity=0.028  Sum_probs=96.0

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCC-C-CcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFT-M-AVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~-g-~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      .+.+|+||+++||++|.|+.+.+.|.|.++++++.+.++ + +.+....+.+.-++-....+-|+. +|+.++.+.++.+
T Consensus         6 ~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~i~~~~~   84 (148)
T 1t17_A            6 VTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDARSIDVSLL   84 (148)
T ss_dssp             EEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTCEEEEEES
T ss_pred             EEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEE-EcCCCcEEEEEEC
Confidence            346899999999999999999999999999999885421 1 133445566543322233445555 4777778999999


Q ss_pred             ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +|+  ++.+.+..++.|.++    +|.+.....++++.+--...+..+++.+.+.-|+++++.++++
T Consensus        85 ~G~--f~~~~g~w~f~~~~~----gt~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~  145 (148)
T 1t17_A           85 YGP--FKRLNNGWRFMPEGD----ATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQL  145 (148)
T ss_dssp             STT--SSCEEEEEEEEEETT----EEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--hhccEEEEEEEECCC----CeEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            984  677788889988642    2777777777655333234445666777777777777777653

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.05  E-value=5.6e-09  Score=82.34  Aligned_cols=134  Identities=13%  Similarity=0.072  Sum_probs=88.4

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecC-CCcceeeEeeceecCCCCEEEEEEee
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISG-LPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G-~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      .+++|+||+++||+++.||.+.+.|.|.+.++++.++.    +..-.+.+..| .+. ...-++..+ ..++.+.|+.++
T Consensus         8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~~----~~~~~~~~~~G~~~~-~~~~~v~e~-~p~~~i~~~~~~   81 (155)
T 3ggn_A            8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDK----RSRWTVEAPAPLGTV-SWEAELTAD-EPGKRIAWRSLP   81 (155)
T ss_dssp             EEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSSS----EEEEEEECCTTTCEE-EEEEEEEEE-ETTTEEEEEECT
T ss_pred             EEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecCC----eeEEEEEecCCcceE-EEEEEEEEe-cCCCEEEEEECC
Confidence            34679999999999999999999999999999988542    22222333223 222 234455544 456678999988


Q ss_pred             cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHhh
Q 046151          142 GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEED----TRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       142 G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~----a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      |+.  ..+..+.++.+.+.++  +|.+.....+++|.+--...    ...+.+.++++.|+.||+.+|.
T Consensus        82 g~~--~~~~g~~~F~~~~~~~--gT~V~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~  146 (155)
T 3ggn_A           82 GAR--IENSGEVLFRPAPGAR--GTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQEL  146 (155)
T ss_dssp             TCS--SCEEEEEEEEECSSSS--CEEEEEEEEEC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--cceEEEEEEEECCCCC--ceEEEEEEEEECCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            853  4567778888763222  48888888887765543222    2345788999999999999996

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=98.93  E-value=1.2e-08  Score=79.74  Aligned_cols=137  Identities=12%  Similarity=0.070  Sum_probs=85.8

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceee--EeeceecCCCCEEEEEEe
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATST--ERLDILDDDRQVTGFSII  140 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~--ErLd~lDd~~~~~sY~ii  140 (209)
                      .+.+|+||+++||+++.|+...+.|.|.+.++++.+|.    +....+++..|.-...++  -++..+|+. +++.|+..
T Consensus         7 ~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~   81 (162)
T 2pcs_A            7 GSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGED----KYKADLQIGIAAVKGKYDAIIEVTDIKPP-YHYKLLVN   81 (162)
T ss_dssp             EEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETT----EEEEEEEECCGGGCEEEEEEEEEEEEETT-TEEEEEEE
T ss_pred             eEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCC----eEEEEEEEEeeeEEEEEEEEEEEEecCCC-cEEEEEEE
Confidence            34689999999999999999999999999988887542    122334443331112333  356666665 46666664


Q ss_pred             e-cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          141 G-GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE---GNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       141 e-G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~---g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      . |..+...+..++++.+..++   +|.+.+...++..-   .--......+...++..-+++||+.+|+.
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~---gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~  149 (162)
T 2pcs_A           82 GEGGPGFVNAEGVIDLTPINDE---CTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKS  149 (162)
T ss_dssp             EEETTEEEEEEEEEEEEESSSS---EEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCccEEEEEEEEEEecCCC---cEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2 22333456677777763322   47777655554211   11223335566777888889999999873

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=98.92  E-value=3.2e-08  Score=76.31  Aligned_cols=134  Identities=10%  Similarity=-0.002  Sum_probs=85.5

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeE--eeceecCCCCEEEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTE--RLDILDDDRQVTGFSI  139 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~E--rLd~lDd~~~~~sY~i  139 (209)
                      ..+.+|+||+++||+++.|+...+.|.|.+.+++ .+|+    +..-.++...|.-.....-  ++..+|+ .+++.|+.
T Consensus        16 ~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~i~~~~   89 (157)
T 2ns9_A           16 EGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-VEDG----SFTIELRLSLGPLRGDARVRASFEDLEK-PSKATVKG   89 (157)
T ss_dssp             EEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-EETT----EEEEEEEEESSSSEEEEEEEEEEEEEET-TTEEEEEE
T ss_pred             eeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-ECCC----EEEEEEEEEEcceeEEEEEEEEEEecCC-CcEEEEEE
Confidence            3446899999999999999999999999998888 5442    2222234333321122333  4546665 45677765


Q ss_pred             ee-ccc-CccceEEEEEEEeecCCCCceEEEEEEeeecCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          140 IG-GEH-RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVP---EGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       140 ie-G~~-p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P---~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      .. |.. ++ .+..+.++.+.+ +   +|.+.+...++..   ..-.......+++..+...+++||+.+|+
T Consensus        90 ~~~~~~~~~-~~~~~~~l~~~~-~---gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~  156 (157)
T 2ns9_A           90 SGRGAGSTL-DFTLRFAVEPSG-G---GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  156 (157)
T ss_dssp             EEECSSEEE-EEEEEEEEEEET-T---EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EecCCCccE-EEEEEEEEEeCC-C---cEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            32 211 23 367777888753 2   4777666554321   12234455678888899999999999986

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=98.72  E-value=4.1e-07  Score=68.66  Aligned_cols=130  Identities=12%  Similarity=0.020  Sum_probs=82.9

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccc-cccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYK-HFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~-p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      .++++|+||+++||+++.|+..++.|. ...  +   .++ ..+|..-.+....++..-.+.-++..+++ ++.+.|+..
T Consensus         8 ~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~--~---~~~-~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~~~~   80 (146)
T 2leq_A            8 QVKTVINAPIEKVWEALVNPEIIKEYMFGTT--V---VSD-WKEGSQIVWKGEWKGKAYEDKGTILQFNE-RSILQYSHF   80 (146)
T ss_dssp             EEEEEECSCHHHHHHHHSCTTHHHHHSSSCE--E---ECC-CSTTCEEEEEEEETTEEEEEEEEEEEEET-TTEEEEECB
T ss_pred             EEEEEECCCHHHHHHHHcCHHHhceeEcCCc--c---eec-cCCCCEEEEEecCCCceecccEEEEEEcC-CCEEEEEEc
Confidence            445789999999999999999988884 221  2   222 24565555665544211156788888887 456778875


Q ss_pred             ec--c---cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          141 GG--E---HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       141 eG--~---~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      ..  .   .+...+..++.+.+.+ +   +|.+.+..... |+.    .....+..-+...|++||+.+|+-
T Consensus        81 ~~~~g~~~~~~~~~~~~~~l~~~~-~---gT~l~~~~~~~-~~~----~~~~~~~~gw~~~l~~Lk~~le~~  143 (146)
T 2leq_A           81 SPLTGKPDLPENYHVVTITLTALK-K---GVEVELTQDNN-ETE----KEQKHSEDNWNTMLEGLKKFLENK  143 (146)
T ss_dssp             CGGGCCCSCGGGSCEEEEEEEECS-S---CEEEEEEEEEE-SSH----HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             cCccCCCCCCCCceEEEEEEEEcC-C---CeEEEEEEecC-Cch----hhHhhHHhhHHHHHHHHHHHHhcc
Confidence            32  1   1223456667777753 2   36665544332 221    345567777899999999999963

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.68  E-value=1.9e-07  Score=73.31  Aligned_cols=130  Identities=12%  Similarity=0.007  Sum_probs=81.9

Q ss_pred             eeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEE
Q 046151           59 CSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        59 ~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      ..-.++++|+||+++||+++.|+..++.|.+.+...++      .+|..-.+.+. |..  .+..++..+++ ++.+.|+
T Consensus         9 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~------~~Gg~~~~~~~-g~~--~~~~~v~e~~p-~~~l~~~   78 (160)
T 2lak_A            9 FVVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEVEP------EPGGLYLVNVT-GAR--FARGSFREVVP-VHRLAYS   78 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHHHHHTSCSSEEESC------STTCCEEECSS-TTC--CSSCCEEEEET-TTEEEEC
T ss_pred             ceEEEEEEeCCCHHHHHHHhcChHHHhhhCCCcceeec------cCCCEEEEEEe-CCc--eEEEEEEEEcC-CCEEEEE
Confidence            34445578999999999999999998888765433322      34444345554 432  45677888887 4557777


Q ss_pred             Eeecc---cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          139 IIGGE---HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       139 iieG~---~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      ...++   .+......++++.+.+ +   +|.+.+.... .+.   . +....+..-+...|++||+.+|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~-~---gT~l~~~~~~-~~~---~-~~~~~~~~gw~~~L~~Lk~~le~~  141 (160)
T 2lak_A           79 FGWDGSEVVPPGSSLVEIDLIEQG-G---GTLLRLTHSG-LPS---A-EQCAGHEEGWAHYLGRLTEVAAGR  141 (160)
T ss_dssp             CCCCSSSCCCTTSCEEEEEEEECS-S---SEEEEEEEEC-CCS---H-HHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EEecCCCCCCCCcEEEEEEEEECC-C---CEEEEEEEeC-CCC---H-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            64332   2334556677777643 2   3666654442 121   1 233344555789999999999975

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.59  E-value=3.6e-07  Score=70.12  Aligned_cols=125  Identities=15%  Similarity=0.035  Sum_probs=81.4

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      .+++.|+||+++||+++.|+...+.|.+.   ++   ++ ..+|....+.+. +   +.+.-++..+++ ++.+.|+...
T Consensus        11 ~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~---~~---~~-~~~G~~~~~~~~-~---g~~~~~v~e~~p-~~~l~~~~~~   78 (143)
T 1xn6_A           11 KQTIVFNASIQKVWSVVSTAEGIASWFMP---ND---FV-LEVGHEFHVQSP-F---GPSPCKVLEIDE-PNHLSFSWDT   78 (143)
T ss_dssp             EEEEEESSCHHHHHHTTSCSHHHHTTSCC---BC---CC-CCTTCEECBCCT-T---CCCCEEEEEEET-TTEEEEEETT
T ss_pred             EEEEEEcCCHHHHHHHHhCHhHHHHhcCC---CC---cC-cCCCCEEEEEEc-C---CCceEEEEEEeC-CCEEEEEEeC
Confidence            45578999999999999999998888775   22   22 356665555542 2   236778888988 4568888754


Q ss_pred             cccCccceEEEEEEEeecCCCCceEEEEEEee-ecCCC-C-----CCHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 046151          142 GEHRLRNYRSVTSVHGFNRDGAICTVVLESYV-VDVPE-G-----NTEEDTRLFADTVVKLNL-QKLVSVAES  206 (209)
Q Consensus       142 G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~-~d~P~-g-----~~~e~a~~~i~~v~k~gL-~~Lk~~~E~  206 (209)
                      +     ....++.+.+.+++   +|.+..... +..++ +     ...+.....+...+...| ++||+.+|+
T Consensus        79 ~-----~~~~~~~l~~~~~g---~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le~  143 (143)
T 1xn6_A           79 D-----GWVVSFDLKDLGDN---KTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG  143 (143)
T ss_dssp             T-----TEEEEEEEEEEETT---EEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred             C-----CEEEEEEEEECCCC---cEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            3     44556677775432   365544333 22111 1     123344556667788999 999999884

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.50  E-value=3.6e-06  Score=67.68  Aligned_cols=133  Identities=14%  Similarity=0.036  Sum_probs=75.3

Q ss_pred             CCCCCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCC
Q 046151           52 YQLSQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDD  131 (209)
Q Consensus        52 h~~~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~  131 (209)
                      |.|.-..|+.+  ++|+||+++||++++||.+++.|.+.++++....++      -  +... ..|.+.++=|.+. |..
T Consensus        22 ~~~~m~~~~~s--i~I~ap~eeVy~~~~D~e~lP~W~~~l~~~~~~~~~------~--w~a~-~~p~G~v~v~~~~-~~~   89 (156)
T 2qpv_A           22 HMPVMQSRIIH--LSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADGE------D--WIAK-GGPLGEVRVNFAP-HNE   89 (156)
T ss_dssp             -CCCCCEEEEE--EEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEETT------E--EEEE-CSSSCEEEEEECC-CCS
T ss_pred             CCCCccceEEE--EEEcCCHHHHHHHHHChhhHHHHHHhhhhhcccCCC------c--EEEe-ccCCCcEEEEEec-CCC
Confidence            34555566666  579999999999999999999999999887222221      1  2222 2333333222221 111


Q ss_pred             CCE-EEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          132 RQV-TGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       132 ~~~-~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      -.. ..|..+.+..-   -.....|.|.+ +   +|.|.....  .|++...... +.-..++...|++||+++|.
T Consensus        90 ~gv~d~~~~l~~g~~---~~~~~rv~p~g-~---GTeV~~tl~--~~pg~~~~~~-~~~~~~v~~dL~~LK~l~E~  155 (156)
T 2qpv_A           90 FGVIDHVVTLPDGLK---VYNALRVTPNG-S---GTEVSFTLL--RLEGMTDEDF-EQDASAITADLEMLKSLLEA  155 (156)
T ss_dssp             SCBCCEEEECTTSCE---EEEEEEEEEET-T---EEEEEEEEE--CCTTCCHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEEecCCCcE---EEEEEEEEeCC-C---CEEEEEEEe--cCCCCChhhh-hhhHHHHHHHHHHHHHHHhC
Confidence            122 23443332111   11234555542 2   476755442  4566666554 23334789999999999984

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=98.49  E-value=2.8e-06  Score=68.00  Aligned_cols=141  Identities=8%  Similarity=-0.080  Sum_probs=81.8

Q ss_pred             CceeeEEeEEEecChHHHHHHhhcCCCCCccccc-cceeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCCE
Q 046151           57 NQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHF-IKSCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQV  134 (209)
Q Consensus        57 ~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~-V~s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~  134 (209)
                      ....-.+++.|+||+++||+++-|...++.|.+. --.|...+++ ..+|..-.+.+.. ++......-++..+++.+ .
T Consensus        20 ~~~~i~~~r~i~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~-r   97 (178)
T 1xuv_A           20 GKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFE-PKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPE-R   97 (178)
T ss_dssp             TCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEEC-CSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-E
T ss_pred             CCcEEEEEEEECCCHHHHHHHhCCHHHHHhCCCCCCccceEEEEe-cccCCEEEEEEECCCCCEEEEEEEEEEEeCCC-E
Confidence            3344556678999999999999998887788431 1112222232 2556554454432 221123567888888754 5


Q ss_pred             EEEEEeecccC--ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHhhc
Q 046151          135 TGFSIIGGEHR--LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRL----FADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       135 ~sY~iieG~~p--~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~----~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      |.|+...++.|  ......++.+.+.++ +  +|.+.....+. +    .+....    .+..-+...|++||+.+|..
T Consensus        98 l~~~~~~~~~~~~~~~~~v~~~l~~~~~-g--gT~lt~~~~~~-~----~~~~~~~~~~~~~~Gw~~~L~~Lk~~le~~  168 (178)
T 1xuv_A           98 IISTFEFEGLPEKGHVILDTARFEALPG-D--RTKLTSHSVFQ-T----IEDRDGMLQSGMEEGINDSYERLDELLEKM  168 (178)
T ss_dssp             EEEEEEETTSSSSCCCEEEEEEEEEETT-T--EEEEEEEEECS-S----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCcEEEEEEEEEcCC-C--CEEEEEEEEeC-C----HHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            67776533333  223455666776532 2  36666655542 1    122222    23456788999999999863

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=98.43  E-value=6.2e-06  Score=62.44  Aligned_cols=135  Identities=11%  Similarity=0.013  Sum_probs=81.5

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcccccc-ceeEEccCCCCCcceEEEEEeec--CCCcceeeEeeceecCCCCEEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFI-KSCSVSDNFTMAVGSTRDVNVIS--GLPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V-~s~e~~eGd~g~vGsvR~lt~~~--G~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      .+.+.|+||+++||+++.|...++.|.+.- -.+...+++ ..+|..-.+.+..  ++......-++..+++ ++.+.|+
T Consensus         6 ~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~-~~~Gg~~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~~   83 (147)
T 1z94_A            6 RLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFLAFASGQKHAFGGRYLELVP-GERIRYT   83 (147)
T ss_dssp             EEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEEETTTCCEEEEEEEEEEEET-TTEEEEE
T ss_pred             EEEEEeCCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEc-cCCCcEEEEEEEECCCCCEEEEEEEEEEEcC-CCEEEEE
Confidence            455789999999999999988877776421 111222232 3567665665541  2222346678888887 4567888


Q ss_pred             EeecccCcc-ceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          139 IIGGEHRLR-NYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       139 iieG~~p~~-~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      ...++.... ....++++.+.+  +  +|.+.....+. |...    ....+..-+...|++||+.+|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~--~--gT~l~~~~~~~-~~~~----~~~~~~~gw~~~L~~L~~~le~~  144 (147)
T 1z94_A           84 DRFDDAGLPGDMITTITLAPLS--C--GADLSIVQEGI-PDAI----PPENCYLGWQQSLKQLAALVEPD  144 (147)
T ss_dssp             EEESCCC---CEEEEEEEEEET--T--EEEEEEEEECC-CTTS----CHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEeCCCCCCcEEEEEEEEecC--C--CEEEEEEEEcC-Cchh----hHHHHHHHHHHHHHHHHHHHHhh
Confidence            754421111 334556666643  2  47666655543 3322    22345667888999999999873

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=98.35  E-value=1.1e-05  Score=63.56  Aligned_cols=143  Identities=10%  Similarity=-0.018  Sum_probs=80.9

Q ss_pred             eeeEEeEEEecChHHHHHHhhcCCCCCcccc-ccceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEE
Q 046151           59 CSSLLAQRIRAPNDVVWSIVRRFDQPQTYKH-FIKSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        59 ~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      -.-.++++|+||+++||+++-|...++.|.+ .--.+...+++ ..+|..-.+.+.  +|. .-...-++..+++ ++.+
T Consensus        14 ~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~-~~~~~~~v~e~~p-~~rl   90 (171)
T 2il5_A           14 VEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEAD-VKEGGKYRIVDQQRNGK-VNVIEGIYESLVM-DEYV   90 (171)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEEC-CSTTCEEEEEEECGGGC-EEEEEEEEEEEET-TTEE
T ss_pred             ceEEEEEEeCCCHHHHHHHHCCHHHHHhccCCCCccceEEEec-ccCCCEEEEEEECCCCC-EEEEEEEEEEEcC-CCEE
Confidence            3445667899999999999999877667753 11112222232 256665445443  231 1135667888876 4557


Q ss_pred             EEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC--CCH-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          136 GFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG--NTE-------EDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       136 sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g--~~~-------e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      .|+...++.|......++.+.+.+++   +|.+..........+  ...       ......+..-+...|++||+.+|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~g---~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~  167 (171)
T 2il5_A           91 KMTIGMPGLSETQDVIEVEFFERETG---GTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIET  167 (171)
T ss_dssp             EEEESCC--CCCCEEEEEEEEECSSS---SEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCCCCcEEEEEEEEECCCC---CEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78876443333334555666764321   265555443221111  111       233344555678889999999986


Q ss_pred             c
Q 046151          207 Q  207 (209)
Q Consensus       207 ~  207 (209)
                      .
T Consensus       168 ~  168 (171)
T 2il5_A          168 S  168 (171)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.25  E-value=1.7e-05  Score=61.36  Aligned_cols=126  Identities=11%  Similarity=-0.011  Sum_probs=78.4

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      .+++.|+||+++||+++.|+..++.|.+..      .++ ..+|..-.+.+ .+   +.+.-++..+++. +.+.|+...
T Consensus         8 ~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~------~~~-~~~Gg~~~~~~-~~---g~~~~~v~e~~p~-~~l~~~~~~   75 (146)
T 1xn5_A            8 KKEVRFNAPIEKVWEAVSTSEGLAFWFMEN------DLK-AETGHHFHLQS-PF---GPSPCQVTDVERP-IKLSFTWDT   75 (146)
T ss_dssp             EEEEEESSCHHHHHHHTTSHHHHHTTSCCB------CCC-SCTTCEEEEEC-SS---CEEEEEEEEEETT-TEEEEEETT
T ss_pred             EEEEEEcCCHHHHHHHHhChhHHHHhcCCC------CCC-ccCCCEEEEEe-cC---CceEEEEEEEeCC-cEEEEEEeC
Confidence            445789999999999999999988886532      222 35676555554 22   3477888889875 567788752


Q ss_pred             cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC-------CCHHHHHHHHHHHHHHHH-HHHHHHHhhcC
Q 046151          142 GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG-------NTEEDTRLFADTVVKLNL-QKLVSVAESQV  208 (209)
Q Consensus       142 G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g-------~~~e~a~~~i~~v~k~gL-~~Lk~~~E~~~  208 (209)
                           .....++.+.+.+ +   +|.+........+.+       ...+.....+..-....| ++|++.+|..+
T Consensus        76 -----~~~~~~~~l~~~~-~---gT~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GW~~~l~~~L~~~l~~~~  141 (146)
T 1xn5_A           76 -----DGWSVTFHLKEEE-N---GTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVELEH  141 (146)
T ss_dssp             -----TTEEEEEEEEECS-S---SEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC---
T ss_pred             -----CCEEEEEEEEEcC-C---CEEEEEEEEEecCCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence                 1234456666642 2   365554433221111       123445556666788888 99999998753

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=98.24  E-value=1.8e-05  Score=62.63  Aligned_cols=132  Identities=9%  Similarity=-0.027  Sum_probs=72.8

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEe---ecCCC-c-ceeeEeeceecCCCCEEEEE
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNV---ISGLP-A-ATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~---~~G~p-~-~~~~ErLd~lDd~~~~~sY~  138 (209)
                      +.+|+|||++||++|.|+.+.+.|.|.+...+-. ++    |..| +.+   .-|+. . ...+-|. .+|++++++.++
T Consensus        12 s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~-~~----~~~~-~~~a~l~vg~~~~~~~~~s~~-~~~~~~~~I~~~   84 (161)
T 3p9v_A           12 DLEIPASYDEVFDLLADVPKSASHFPKVDKLVDL-GN----NAYR-WEMEKVGVDKHAIQSVYACTY-HADKEAGKITWS   84 (161)
T ss_dssp             EEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEE-ET----TEEE-EEECCBSSGGGCBCCEEEEEE-EEETTTTEEEEE
T ss_pred             EEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEc-CC----CceE-EEEEEEeeeeEEEEEEEEEEE-EEcCCCCEEEEE
Confidence            3579999999999999999832333333222221 22    2222 222   22211 1 1222232 367778899999


Q ss_pred             EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVP---EGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P---~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +++|++ .+......++.|.++ |  .|.|.+...++.+   .+--...+..+++.+++.-+++..+.+++
T Consensus        85 ~~~g~~-~~~l~g~w~f~p~~~-g--~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~  151 (161)
T 3p9v_A           85 PIKGEG-NGVVSGSWTLSAKGD-N--ATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKK  151 (161)
T ss_dssp             ECTTST-TEEEEEEEEEEESSS-S--CEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EecCcc-ceeEEEEEEEEECCC-C--eEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998765 355667778888653 3  2677777666544   33333333444444444444444444443

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=98.20  E-value=3.9e-05  Score=58.75  Aligned_cols=126  Identities=10%  Similarity=0.013  Sum_probs=76.8

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcc-cc-ccceeEEccCCCCCcceEEEEEeec--CCCcceeeEeeceecCCCCEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTY-KH-FIKSCSVSDNFTMAVGSTRDVNVIS--GLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w-~p-~V~s~e~~eGd~g~vGsvR~lt~~~--G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      .+++.|+||+++||+++-|...++.| .+ .--.+...+++ ..+|..-.+.+..  |.......-++..+++. +.+.|
T Consensus         4 ~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p~-~~l~~   81 (142)
T 2lcg_A            4 TVETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVD-LREGGAFSSRMEAKDGSMGFDFAGTYTKVVEN-KRIEY   81 (142)
T ss_dssp             EEEEEESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEEC-CSTTCEEEEEEEETTSSCEEEEEEEEEEEETT-TEEEE
T ss_pred             EEEEEeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEc-cccCCEEEEEEEcCCCCceeeeEEEEEEEcCC-CEEEE
Confidence            35678999999999999998887777 33 21112222232 3567666555542  21112466778888874 55778


Q ss_pred             EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +.- |      ...++.+.+.+  +  +|.+.....+  +.....    ..+..-....|++|++.+|.
T Consensus        82 ~~~-g------~~~~~~l~~~~--~--gT~l~~~~~~--~~~~~~----~~~~~Gw~~~L~~L~~~le~  133 (142)
T 2lcg_A           82 AFG-D------RTAKVEFLEAP--Q--GVTVRVSFVA--ETEYPV----EQQQQGWQAILNNFKRHVES  133 (142)
T ss_dssp             EET-T------EEEEEEEEEET--T--EEEEEEEEEC--CSSSCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             EcC-C------CEEEEEEEEcC--C--CEEEEEEEec--CCHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            861 1      44455666643  2  4766655444  222222    23455678889999999986

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.18  E-value=7.1e-05  Score=56.80  Aligned_cols=122  Identities=13%  Similarity=0.028  Sum_probs=75.5

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      +++.|+||+++||+++-|+..++.|.+.  .+   .++ ..+|..-.+.+.. .+ ...+=++..+++. +.+.|+..+|
T Consensus         5 ~~~~i~ap~e~Vw~altd~~~~~~W~~~--~~---~~~-~~~Gg~~~~~~~~-~~-~~~~~~v~~~~p~-~~l~~~~~~g   75 (135)
T 3q6a_A            5 TKMQVDVPRETVFEAFVDPEKIGGFWFS--SS---SER-WEQGKTITLRYEE-YD-AELNINIERVEDN-QLIAFTWGAH   75 (135)
T ss_dssp             EEEEESSCHHHHHHHHHCTTTGGGTSSS--EE---SSC-CCTTCEEEEECGG-GT-C-CEEEEEEEETT-TEEEEEETTE
T ss_pred             EEEEeCCCHHHHHHHHcCHHHhcccCCC--CC---ccc-ccCCCEEEEEEcC-cC-ceEEEEEEEEcCC-CEEEEEEcCC
Confidence            4578999999999999999998888542  23   232 3567665566532 11 1234467777766 4577887542


Q ss_pred             ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          143 EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       143 ~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                             ..++++.+.+ +   +|.+....... +.. ..+ ....+..-....|++||+.+|..
T Consensus        76 -------~~~~~l~~~~-~---gT~l~~~~~~~-~~~-~~~-~~~~~~~GW~~~l~~L~~~le~g  126 (135)
T 3q6a_A           76 -------PITIQFEESE-A---GTVVTTTEKDF-DTQ-DVK-QLLGQKEGWVYMLSCLKVYLEHG  126 (135)
T ss_dssp             -------EEEEEEEEET-T---EEEEEEEECCC-CSS-CHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -------eEEEEEEECC-C---CEEEEEEEcCC-Ccc-hHH-HHhhchhCHHHHHHHHHHHHhcC
Confidence                   4556777642 2   46665443321 222 122 23445556778899999999873

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=98.11  E-value=6.7e-05  Score=59.21  Aligned_cols=141  Identities=9%  Similarity=0.045  Sum_probs=77.5

Q ss_pred             eeEEeEEEecChHHHHHHhhcCCCCCcccc-ccceeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCCEEEE
Q 046151           60 SSLLAQRIRAPNDVVWSIVRRFDQPQTYKH-FIKSCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        60 ~~~v~~~I~APa~~VW~vVrdF~~~~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      .-.+++.|+||+++||+++-|...++.|.. .=-.+...+++ ..+|..-.+.+.. ++......-++.++++.+ .+.|
T Consensus        13 ~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~~~v~e~~p~~-rl~~   90 (172)
T 2ldk_A           13 SFSIVAEFDADVKRVWAIWEDPRQLERWWGPPTWPATFETHE-FTVGGKAAYYMTGPDGTKARGWWQFTTIEAPD-HLEF   90 (172)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHHTTSSCTTSCEEEEEEC-CSTTCEEEEEEECTTSCEEEEEEEEEEECSSS-EEEE
T ss_pred             eEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCcccceEEEe-ecCCCEEEEEEECCCCCEEeeEEEEEEEcCCC-EEEE
Confidence            345667899999999999999777666632 10012222232 3566554444432 221123567888888754 4667


Q ss_pred             EEeecc---cCc---cceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          138 SIIGGE---HRL---RNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       138 ~iieG~---~p~---~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +....+   .|.   .....++.+.+.  ++  +|.+.....+. ++...+......+..-+...|++||+.+|+.
T Consensus        91 ~~~~~~~~g~p~~~~~~~~v~~~l~~~--~~--gT~lt~~~~~~-~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~  161 (172)
T 2ldk_A           91 DDGFADEHGAPVDELGVTHATVKLEPL--EN--RTRMTIISTFE-SEEQMQKMAEMGMEEGMREAIEQIDAVLSEP  161 (172)
T ss_dssp             EEEEBCSSCCBCTTTCEEEEEEEEEEE--TT--EEEEEEEEEES-CHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC
T ss_pred             EEeecCCCCCccCCCccEEEEEEEEEc--CC--CEEEEEEEEcC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            764221   221   223445566664  22  47666555542 2110011111234566788999999999874

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.08  E-value=0.00012  Score=58.17  Aligned_cols=138  Identities=9%  Similarity=0.016  Sum_probs=79.0

Q ss_pred             ceeeEEeEEEecChHHHHHHhhcCCCCCccccc--cceeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCCE
Q 046151           58 QCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHF--IKSCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQV  134 (209)
Q Consensus        58 ~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~--V~s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~  134 (209)
                      ...-.++++|+||+++||+++-|...++.|.+.  + .+...+++ ..+|..-.+.+.. ++......-++..+++.+ .
T Consensus         9 ~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~p~~~-~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~-r   85 (178)
T 1xfs_A            9 ELDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPW-SISDCRVD-LRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEK-R   85 (178)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTC-EEEEEEEC-CSTTCEEEEEEECTTCCEEEEEEEEEEEETTT-E
T ss_pred             CceEEEEEEecCCHHHHHHHhCCHHHHhhCCCCCCe-eeeEEEEe-eECCcEEEEEEECCCCCEEEEEEEEEEEeCCC-E
Confidence            334456678999999999999998887777432  2 12222232 3567655555542 221124566788888654 4


Q ss_pred             EEEEEeecc--cCcc------------ceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHH----HHHHHHHH
Q 046151          135 TGFSIIGGE--HRLR------------NYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLF----ADTVVKLN  196 (209)
Q Consensus       135 ~sY~iieG~--~p~~------------~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~----i~~v~k~g  196 (209)
                      +.|+..-++  .|..            ....++++.+.+  +  +|.+.....+.     ..+....+    +..-+...
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~--~--gT~l~~~~~~~-----~~~~~~~~~~~~~~~Gw~~~  156 (178)
T 1xfs_A           86 LIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTS--S--GTRYTACAMHN-----TPGQRKLHEEMGFHEGWGTT  156 (178)
T ss_dssp             EEEESSEEGGGEECCC-----------CCEEEEEEEECS--S--SEEEEEEEECS-----SHHHHHHHHTTTHHHHHHHH
T ss_pred             EEEEEEEcCCCCccccccccccccccccEEEEEEEEECC--C--CEEEEEEEEcC-----CHHHHHHHHhhhHHHHHHHH
Confidence            667753111  1211            234555666642  2  36665554442     11222222    35567889


Q ss_pred             HHHHHHHHhhc
Q 046151          197 LQKLVSVAESQ  207 (209)
Q Consensus       197 L~~Lk~~~E~~  207 (209)
                      |++||+.+|+.
T Consensus       157 l~~L~~~le~~  167 (178)
T 1xfs_A          157 ITQLEELLKQE  167 (178)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999874

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.04  E-value=0.00017  Score=55.68  Aligned_cols=128  Identities=13%  Similarity=0.020  Sum_probs=73.4

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcc-ccc--cceeEEccCCCCCcceEEEEEeec-CCC-cceeeEeeceecCCCCEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTY-KHF--IKSCSVSDNFTMAVGSTRDVNVIS-GLP-AATSTERLDILDDDRQVTG  136 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w-~p~--V~s~e~~eGd~g~vGsvR~lt~~~-G~p-~~~~~ErLd~lDd~~~~~s  136 (209)
                      .+++.|+||+++||+++-|...++.| .+.  + .+...+++ ..+|..-.+.+.. ++. .-.+.-++..+++. +.+.
T Consensus         4 ~~~~~i~Ap~e~Vw~altdp~~~~~W~~~p~~~-~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~-~~l~   80 (144)
T 2lgh_A            4 SIEAHIEQEIEAVWWAWNDPDCIARWNAASSDW-HTTGSRVD-LVVGGRFCHHMAAKDGSAGFDFTGTFTRVEAP-TRLS   80 (144)
T ss_dssp             EEEEEESSCHHHHHHHHHCHHHHTTSSSCSTTE-EEEEEEEC-CSTTCEEEEEEEETTSSCEEEEEEEEEEEETT-TEEE
T ss_pred             EEEEEeCCCHHHHHHHhCCHHHHhccCCCCCCc-ccceEEEC-CCCCCEEEEEEECCCCCceEEeEEEEEEEeCC-CEEE
Confidence            35678999999999999998887787 431  1 11122222 2455443344331 222 11345678888864 5577


Q ss_pred             EEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          137 FSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       137 Y~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      |+.. |     ....++++.+.  ++  +|.+.-...+  +....    ...+..-....|++|++.+|...
T Consensus        81 ~~~~-~-----~~~~~~~l~~~--~~--gT~l~~~~~~--~~~~~----~~~~~~Gw~~~L~~L~~~le~~~  136 (144)
T 2lgh_A           81 FVMD-D-----GREVDVQFASE--PG--GTWVQETFDA--ETSHT----PAQQQAGWQGILDNFKRYVEAAG  136 (144)
T ss_dssp             EEET-T-----CCEEEEEEEEE--TT--EEEEEEEEEC--CTTSC----HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEec-C-----CcEEEEEEEEc--CC--CEEEEEEEEC--CCHHH----HHHHHHHHHHHHHHHHHHHhhCc
Confidence            8853 2     23445566664  22  3655443433  22222    22244556778999999998743

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.01  E-value=8.9e-05  Score=58.69  Aligned_cols=142  Identities=8%  Similarity=-0.067  Sum_probs=79.6

Q ss_pred             CCceeeEEeEEEecChHHHHHHhhcCCCCCcccccc-ceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCC
Q 046151           56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFI-KSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDR  132 (209)
Q Consensus        56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V-~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~  132 (209)
                      ++...-.+++.|+||+++||+++-|...+..|.+.- -.+...+++ ..+|..-.+.+.  +|.. -.+.=++..+++..
T Consensus        10 ~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p~~   87 (164)
T 3pu2_A           10 GSATRLEFRRHFAATPEQLWAALTSPALLPAWLFARGWPMTECVFE-PHKGGLIRQVWTGPEGRT-RGLTGRVILAEPPH   87 (164)
T ss_dssp             CBTTEEEEEEEESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEEEC-CSTTCEEEEEEECGGGCE-EEEEEEEEEEETTT
T ss_pred             CCCceEEEEEEECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEEEe-ccCCCEEEEEEECCCCCE-EEEEEEEEEEcCCC
Confidence            344455667899999999999999999988886421 112222232 356654444432  2321 14566777787754


Q ss_pred             CEEEEEEe--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 046151          133 QVTGFSII--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDT-RLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       133 ~~~sY~ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a-~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                       ++.|+..  ++..|. .-..++.+.+.+  +  +|.+.....+.  .....+.. ...+..-....|++|++.++.+
T Consensus        88 -rl~~t~~~~~~~~~~-~s~vt~~l~~~~--~--gT~l~l~~~~~--~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~~  157 (164)
T 3pu2_A           88 -RLIHSELYDEDWTGG-ETLVTLQLLPVE--G--GTELAMAVDYA--TPEARDAVAASAMATEMEEAYRHLDVMLAAL  157 (164)
T ss_dssp             -EEEEEEBCC---CCS-CEEEEEEEEEET--T--EEEEEEEEECS--STTHHHHHHTSTHHHHHHHHHHHHHHHHHHC
T ss_pred             -EEEEEEeccCCCCCC-CEEEEEEEEEcC--C--CEEEEEEEEeC--CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence             4667653  211222 233445666543  2  36554444442  22111111 1345667888999999998875

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.00  E-value=7.6e-05  Score=58.69  Aligned_cols=139  Identities=11%  Similarity=0.078  Sum_probs=77.1

Q ss_pred             eeEEeEEEecChHHHHHHhhcCCCCCccccc-cceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEEE
Q 046151           60 SSLLAQRIRAPNDVVWSIVRRFDQPQTYKHF-IKSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVTG  136 (209)
Q Consensus        60 ~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~-V~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~s  136 (209)
                      .-.+++.|+||+++||.++-|...+..|... =-.+...+++ ..+|..-.+.+.  +|..  ...-++..+++.+ .|.
T Consensus         9 ~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~--~~~g~v~e~~p~~-rl~   84 (164)
T 2l9p_A            9 KIIFTRTFSAPINKVFDAYTKRELFEQWFHPQDASVTVYDFN-ATKGGSAFYAIQAPQMIS--YTIAEYLQVDAPY-YIE   84 (164)
T ss_dssp             EEEECCEESSCHHHHHHHHHCHHHHTTTCCCTTCEEEEEECC-CSTTEEEEEEEEETTEEE--EEEEEESCCBTTT-EEE
T ss_pred             eEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCceeeEEEEe-ccCCCEEEEEEECCCCCE--EEEEEEEEEcCCC-EEE
Confidence            4456678999999999999998887777431 0012222343 356655444433  2311  1677888888755 466


Q ss_pred             EEEeecc---cCc---cceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhcC
Q 046151          137 FSIIGGE---HRL---RNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDT-RLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       137 Y~iieG~---~p~---~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a-~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      |+...++   .|.   .....++++.+.  ++  +|.+.-...+.  .....+.. ...+..-....|++|++.+|++.
T Consensus        85 ~t~~~~~~~g~p~~~~~~~~v~~~l~~~--~~--gT~l~~~~~~~--~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~  157 (164)
T 2l9p_A           85 YLDYFATSKGEKDTSMPGMHITLNFEEV--KG--KTTVTSTSTFP--TESAAQQAIDMGVETGMNSTLNQLEKLLNQKL  157 (164)
T ss_dssp             EEEEEEBTTBSCCSSSCCEEEEEEECCC--SS--SEEEEEEEECS--STTHHHHHHHHTHHHHHHHHHHHHHHHHHSSC
T ss_pred             EEEEecCCCCCccCCCCceEEEEEEEEC--CC--CEEEEEEEEcC--CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            6654211   121   223444455543  22  35554434432  22111211 12345557778999999999864

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=97.99  E-value=0.00022  Score=55.01  Aligned_cols=128  Identities=13%  Similarity=0.093  Sum_probs=74.2

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcc-cc-ccceeEEccCCCCCcceEEEEEeec-CCC-cceeeEeeceecCCCCEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTY-KH-FIKSCSVSDNFTMAVGSTRDVNVIS-GLP-AATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w-~p-~V~s~e~~eGd~g~vGsvR~lt~~~-G~p-~~~~~ErLd~lDd~~~~~sY  137 (209)
                      .+++.|+||+++||+++-|...++.| .+ .=-.|...+++ ..+|..-.+.+.. +++ .-.+.-++..+++.+ .|.|
T Consensus         5 ~~~~~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~-~l~~   82 (144)
T 2l8o_A            5 TVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQND-LKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTND-LIEY   82 (144)
T ss_dssp             EEEEEECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECC-CSTTCEEEEEEECTTSSCEEEEEEEEEEEETTT-EEEE
T ss_pred             EEEEEECCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEc-cCCCCEEEEEEECCCCCceeeeeEEEEEEeCCC-EEEE
Confidence            35678999999999999998887777 43 11123333333 2455544444432 222 113566788888754 5778


Q ss_pred             EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +.. |     ....++++.+.+  +  +|.+.....+  +.....    ..+..-....|++|++.+|.+
T Consensus        83 ~~~-g-----~~~v~~~l~~~~--~--gT~l~~~~~~--~~~~~~----~~~~~Gw~~~L~~L~~~le~~  136 (144)
T 2l8o_A           83 TIG-D-----GRKVRIVFTHTG--D--TTNIVESFDP--EETNPR----ELQQSGWQAILNSFKSYTENN  136 (144)
T ss_dssp             EET-T-----CCEEEEEEEECS--S--SEEEEEEECC--CSSSCH----HHHHHHHHHHHHHHHHHHGGG
T ss_pred             EeC-C-----CeEEEEEEEEcC--C--CEEEEEEEeC--CCHHHH----HHHHHHHHHHHHHHHHHHHhH
Confidence            853 2     234455666642  2  3655444333  322222    223445677899999999874

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=97.99  E-value=6.9e-05  Score=59.04  Aligned_cols=135  Identities=13%  Similarity=0.038  Sum_probs=75.0

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCcccccc-----ceeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCCE
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYKHFI-----KSCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQV  134 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V-----~s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~  134 (209)
                      =.+++.|+||+++||+++-|...+..|.+..     ..+++   + ..+|..-.+.+.. ++....+.=++.++++.++ 
T Consensus        11 i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~~---d-~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~r-   85 (162)
T 3q64_A           11 FIIERLYPAPPSKVFFALGNADAKRRWFTDPDNPMPGRFEM---D-FRVGGKEVNAGGPKDGPIHVYTATYQDIVPDQR-   85 (162)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCEE---C-CSTTCEEEEEECCTTSCCEEEEEEEEEEETTTE-
T ss_pred             EEEEEEeCCCHHHHHHHHCCHHHHhhcCCCCCCccceEEEE---C-CccCCEEEEEEECCCCCEEEEEEEEEEEcCCCE-
Confidence            3566789999999999999988877776322     12222   2 2455554444432 1211246677888877544 


Q ss_pred             EEEEEe--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          135 TGFSII--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       135 ~sY~ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +.|+..  ....+...-..++.+.+.+  +  +|.+........+++..   ....+..-....|++|++.+|+.
T Consensus        86 l~~~~~~~~~~~~~~~s~v~~~l~~~~--~--gT~lt~~~~~~~~~~~~---~~~~~~~GW~~~L~~L~~~le~~  153 (162)
T 3q64_A           86 IVYSYDMLFGETRISVSLATIQLFAEG--E--GTRLVLTEQGAFLDGHD---TPSTREHGTGVLLDLLDAFLDKT  153 (162)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEET--T--EEEEEEEEEEEEETTSS---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCceEEEEEEEEcC--C--CEEEEEEEEecCccchh---HHHHHHHHHHHHHHHHHHHHhhc
Confidence            556653  1122222233344556543  2  36554433321122211   12345666788899999999873

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=97.96  E-value=0.00018  Score=55.70  Aligned_cols=136  Identities=9%  Similarity=-0.062  Sum_probs=73.6

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcccc-ccceeE--EccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCCEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKH-FIKSCS--VSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p-~V~s~e--~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      .+++.|+||+++||+++-|...+..|.+ .--.+.  ..+.+ ..+|..-.+.+.. ++..-...=++..+++. +.+.|
T Consensus         5 ~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~-~~l~~   82 (152)
T 3eli_A            5 RLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLD-FTRLGPWFSVMVNGEGQRYKVSGQVTHVKPP-QSVGF   82 (152)
T ss_dssp             EEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCC-CSSSEEEEEEEECTTCCEEEEEEEEEEEETT-TEEEE
T ss_pred             EEEEEECCCHHHHHHHHcCHHHHhhccCCCCcccccceeEEc-ccCCcEEEEEEECCCCCEEEEEEEEEEEcCC-CEEEE
Confidence            4567899999999999999887777743 111111  11222 3566554455432 11111456778888775 44667


Q ss_pred             EEeecccCc-cceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          138 SIIGGEHRL-RNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       138 ~iieG~~p~-~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +....+.+- ....+.+++.-.+.++  +|.+.-.... .+.   . +....+..-....|++|++.+|-
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~l~~~~~--gT~l~l~~~~-~~~---~-~~~~~~~~GW~~~L~~L~~~l~~  145 (152)
T 3eli_A           83 TWGWHDDDDRRGAESHVMFIVEPCAK--GARLILDHRE-LGD---D-EMSLRHEEGWTSSLRKLAAELAL  145 (152)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCBC----CEEEEEEEES-CSC---H-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeecCCCCCCCCcEEEEEEEEECCC--CEEEEEEEcc-CCC---H-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            764322211 1123444443323332  3655433331 122   1 23445666788899999998874

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=97.95  E-value=0.00019  Score=55.88  Aligned_cols=131  Identities=8%  Similarity=-0.031  Sum_probs=75.4

Q ss_pred             eeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEE
Q 046151           59 CSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        59 ~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      ..-.+++.|+||+++||+++-|...++.|.+.   +.   ++ ..+|..-.+....|   ..+.=++..+++.+ .+.|+
T Consensus         9 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~---~~---~~-~~~Gg~~~~~~~~g---~~~~g~v~e~~p~~-~l~~~   77 (151)
T 3q63_A            9 RTVVVERQISHPPEKLWRALTQPHLIEEWLMK---ND---FK-PAVGHRFNISADWG---GVLDCEVLAVEPNK-TLSYT   77 (151)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHHHHHHSCE---EC---CC-SSTTCEEEEECTTS---CEEEEEEEEEETTT-EEEEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHcCHHHHHhhcCc---CC---Cc-cCCCCEEEEECCCC---CEEEEEEEEEeCCC-EEEEE
Confidence            34456678999999999999998888888762   22   22 35665544442222   35667777888755 46677


Q ss_pred             Eeecc--c-CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          139 IIGGE--H-RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       139 iieG~--~-p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      ...++  . +...-..++.+.+.+ +   +|.+....... ++. .. .....+..-....|++|++.+|..
T Consensus        78 ~~~~~~~~~~~~~s~v~~~l~~~~-~---gT~l~l~~~g~-~~~-~~-~~~~~~~~GW~~~L~~L~~~le~~  142 (151)
T 3q63_A           78 WNLAHQDPAFDLRSVVTFTLTPTP-T---GTHLRMEQSGF-RPD-QR-RAYGGAKMGWPQFFEKLEQLLDRT  142 (151)
T ss_dssp             CBBCCSSTTTCBCCEEEEEEEECS-S---SEEEEEEEECC-CTT-CH-HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EecCCCCCCCCCCeEEEEEEEEcC-C---CEEEEEEEeCC-Ccc-hH-HHHHhhhhCHHHHHHHHHHHHhcc
Confidence            64321  1 111223344556542 2   36554433322 222 22 233344555677899999999874

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=97.93  E-value=2.4e-05  Score=61.02  Aligned_cols=125  Identities=13%  Similarity=0.022  Sum_probs=75.5

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      -.+++.|+||+++||+++.|+..++.|.+.   +   .++ ..+|..-.+.+..|    .+.-++..+++. +.+.|+..
T Consensus        12 i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~---~---~~~-~~~Gg~~~~~~~~g----~~~~~v~e~~p~-~~l~~~~~   79 (152)
T 2kew_A           12 ITKSITLEAPIQKVWETVSTSEGIAKWFMP---N---DFQ-LKEGQEFHLQSPFG----PSPCKVLAVQAP-TELSFEWD   79 (152)
T ss_dssp             EEEEEEECSCHHHHHHHSSSSHHHHHHHCS---C---CCC-SCSSCCBCSSSSCC----SCCBEEEEEETT-TEEEEECT
T ss_pred             EEEEEEECCCHHHHHHHHhCHHHHHHhcCC---C---CCC-CCCCCEEEEEecCC----ceEEEEEEEeCC-cEEEEEEc
Confidence            344578999999999999999998888654   2   222 24555444444222    356678888875 55778764


Q ss_pred             ecccCccceEEEEEEEeecCCCCceEEEEEEee-ecCCC-C-----CCHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 046151          141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYV-VDVPE-G-----NTEEDTRLFADTVVKLNL-QKLVSVAES  206 (209)
Q Consensus       141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~-~d~P~-g-----~~~e~a~~~i~~v~k~gL-~~Lk~~~E~  206 (209)
                      .+     ....++.+.+.+  +  +|.+..... +..++ +     ...+.....+..-....| ++||+.+|.
T Consensus        80 ~~-----~~~~~~~l~~~~--~--gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~  144 (152)
T 2kew_A           80 TE-----GWVVTFQLEDLG--E--KTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEE  144 (152)
T ss_dssp             TS-----CCEEEEEEECCS--S--CEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred             cC-----CEEEEEEEEECC--C--CEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            33     233455666532  2  365544332 32111 1     113334445666678888 999999986

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=97.91  E-value=0.00015  Score=57.75  Aligned_cols=135  Identities=10%  Similarity=-0.037  Sum_probs=75.1

Q ss_pred             eeEEeEEEecChHHHHHHhhcCCCCCcccc-c-cceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEE
Q 046151           60 SSLLAQRIRAPNDVVWSIVRRFDQPQTYKH-F-IKSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        60 ~~~v~~~I~APa~~VW~vVrdF~~~~~w~p-~-V~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      .-.+++.|+||+++||.++-|...+..|.. . + .+...+++ ..+|..-.+.+.  +|.. ....-++.++++.++ +
T Consensus        17 ~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~-~~~~~~~d-~~~Gg~~~~~~~~~~G~~-~~~~g~v~e~~p~~r-l   92 (175)
T 2lf2_A           17 TITIKREFAAVRAIVWEAFTRAEILDQWWAPKPW-KAKTKSMD-FKEGGTWLYAMVGPNGEE-HWSICEYAIIKPIER-F   92 (175)
T ss_dssp             EEEEEEEESSCHHHHHHHHTCHHHHHHSSSSSSS-EEEEEEEC-CSTTCEEEEEEECSSSCE-EEEEEEECCCCSSSE-E
T ss_pred             eEEEEEEEcCCHHHHHHHhCCHHHHhhCcCCCCc-cceEEEEe-ccCCCEEEEEEECCCCCE-EEeEEEEEEEcCCCE-E
Confidence            345567899999999999999888777742 1 1 12222232 255654444443  2321 135678888887554 5


Q ss_pred             EEEEeecc---cCc---cceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHh
Q 046151          136 GFSIIGGE---HRL---RNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRL----FADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       136 sY~iieG~---~p~---~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~----~i~~v~k~gL~~Lk~~~E  205 (209)
                      .|+..-++   .|.   .....++++.+.+  +  +|.+.-...+.     ..+....    .+..-....|++|++.+|
T Consensus        93 ~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~--~--gT~l~~~~~~~-----~~~~~~~~~~~~~~~Gw~~~L~~L~~~le  163 (175)
T 2lf2_A           93 TGKDGFTDASGKLNTEMPRSNWDMRFIDKG--E--ITEVQYHISYD-----DVAQLEATIQMGFKEGITMAMENLDELLV  163 (175)
T ss_dssp             EEEEEEESSTTCCCTTSCCEEEEEEEEEET--T--EEEEEEEEECS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCcCCCCCcEEEEEEEEECC--C--CEEEEEEEecC-----CHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            56653211   221   2344555666642  2  35554333332     1222222    245556778999999998


Q ss_pred             hc
Q 046151          206 SQ  207 (209)
Q Consensus       206 ~~  207 (209)
                      +.
T Consensus       164 ~~  165 (175)
T 2lf2_A          164 SG  165 (175)
T ss_dssp             HH
T ss_pred             hC
Confidence            63

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=97.91  E-value=0.00018  Score=58.59  Aligned_cols=124  Identities=10%  Similarity=0.036  Sum_probs=74.6

Q ss_pred             CCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEE
Q 046151           56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      +....-.+++.|+||+++||+++-|+..++.|.+.....++      .+|..-.+.+.+    ....-++..+++.+ .+
T Consensus        33 ~~~~~i~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~~d~------~~Gg~~~~~~~~----~~~~~~v~e~~p~~-rl  101 (184)
T 2nn5_A           33 NQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGEL------GVNGFWRFILPD----FEETMPFTDYAEEK-YL  101 (184)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEEC------STTCEEEEEETT----EEEEEEEEEEETTT-EE
T ss_pred             CCCcEEEEEEEeCCCHHHHHHHHcCHHHHHHhCCCcccccc------CCCCEEEEEEeC----CCceEEEEEecCCC-EE
Confidence            33345556678999999999999999998899764433233      344433344421    23456788888765 46


Q ss_pred             EEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeec--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          136 GFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVD--VPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       136 sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d--~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      .|+.. +      ...++.+.+.. ++  +|.+.....+.  .+.  ..+   . ....+...|++||+.+|+
T Consensus       102 ~~~~~-~------~~v~~~l~~~~-~~--gT~l~~~~~~~~g~~~--~~~---~-~~~GW~~~L~~Lk~~le~  158 (184)
T 2nn5_A          102 GVTWD-T------GIIYFDLKEQA-PH--QTLLVFSESLPENFTT--PRH---K-DIAGWSIVLNRLKQVVET  158 (184)
T ss_dssp             EEEET-T------EEEEEEEEEEE-TT--EEEEEEEEEECTTCSS--CHH---H-HHHHHHHHHHHHHHHHHC
T ss_pred             EEEEc-C------eEEEEEEEECC-CC--CEEEEEEEeccCCccc--hhh---H-HHHHHHHHHHHHHHHHhc
Confidence            67652 1      34455666622 22  35554443221  221  122   1 445577889999999986

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=97.89  E-value=0.00011  Score=57.76  Aligned_cols=138  Identities=10%  Similarity=-0.006  Sum_probs=72.7

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccccccc--eeEEccCCCCCcceEEEEEeec-CCCcceeeEeeceecCCCCEEEE
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIK--SCSVSDNFTMAVGSTRDVNVIS-GLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~--s~e~~eGd~g~vGsvR~lt~~~-G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      =.+++.|+||+++||+++-|...+..|.+...  .+...+++ ..+|..-.+.+.. ++..-.+.=++..+++.++ +.|
T Consensus        10 i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~r-l~~   87 (161)
T 3rd6_A           10 FTIERTYPQSPDRVFHAFADKATVRRWRVDGDGFTVAEFSFD-FRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQR-IVF   87 (161)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHHHHHHHTCCCCC---CEEEEC-CSTTCEEEEEECSTTSCCEEEEEEEEEEETTTE-EEE
T ss_pred             EEEEEEECCCHHHHHHHhcCHHHHhhccCCCCCceeeEEEEc-cCcCCEEEEEEECCCCCEEEEEEEEEEEcCCCE-EEE
Confidence            35667899999999999999887777763211  11111222 2556554455432 1111245667788887544 556


Q ss_pred             EEe--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          138 SII--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       138 ~ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +..  ....+......++.+.+.+  +  +|.+........+++..   ....+..-....|++|++.+|..
T Consensus        88 ~~~~~~~~~~~~~s~v~~~l~~~~--~--gT~lt~~~~~~~~~~~~---~~~~~~~GW~~~L~~L~~~le~~  152 (161)
T 3rd6_A           88 SYRMAIGPQPMSASLTTVELTPSG--D--GTRLTYTEQGAFFDGVD---SAKGREEGTRGLLEALAAELQKW  152 (161)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEET--T--EEEEEEEEEEEEETTCC---CHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEecCCCCCCCceEEEEEEEECC--C--CEEEEEEEEecCcchhh---hHHHHHHHHHHHHHHHHHHHhhc
Confidence            653  1222222233444556542  2  35553333221122211   12345566888899999998863

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=97.76  E-value=0.00012  Score=58.09  Aligned_cols=133  Identities=13%  Similarity=0.044  Sum_probs=71.5

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccc-cc----cceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCC
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYK-HF----IKSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQ  133 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~-p~----V~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~  133 (209)
                      =.+++.|+||+++||.++-|...+..|. |.    +..+++   + ..+|..-.+.+.  +|. .-.+.-++.++++.++
T Consensus        11 i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~~~---d-~~~GG~~~~~~~~~~G~-~~~~~g~v~ev~p~~r   85 (166)
T 3put_A           11 FVIERRLTAPVARVFRAWSTPESKRQWFACHGEWVPLEYAL---D-FRPGGTERNYTADTDGL-LHAYDARYIDIVPDTR   85 (166)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHHHHHHHHTCC---CCSEEEE---C-CSTTCEEEEEEECTTSC-EEEEEEEEEEEETTTE
T ss_pred             EEEEEEECCCHHHHHHHhCCHHHHHhcCCCCCCceeeEEEe---C-cccCCEEEEEEECCCCC-EEEEEEEEEEEcCCcE
Confidence            3566789999999999999877777775 22    222333   2 245544444432  332 1235677888887554


Q ss_pred             EEEEEEe--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          134 VTGFSII--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       134 ~~sY~ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                       +.|+..  .+..+...-..++.+.+.  ++  +|.+.-.-....+++..   ....+..-....|++|++.+|+
T Consensus        86 -lv~t~~~~~~~~~~~~s~vt~~l~~~--~~--gT~ltl~~~~~~~~~~~---~~~~~~~GW~~~L~~L~~~le~  152 (166)
T 3put_A           86 -IIYAYEMKLGQTRISASLVTVAFDVE--PS--GTRMVFTEQVVFLDGYG---DNGARLQGTEIGLDNLELFLVR  152 (166)
T ss_dssp             -EEEEEEEEETTEEEEEEEEEEEEEEC--SS--SEEEEEEEEEEEETTCC---CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEEecCCCCCCCceEEEEEEEEC--CC--CEEEEEEEEecCccchh---hHHHHHHHHHHHHHHHHHHHhc
Confidence             556653  112222222334455553  22  25443222211122211   1223455677789999999987

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=97.67  E-value=0.00051  Score=55.81  Aligned_cols=129  Identities=12%  Similarity=0.098  Sum_probs=77.4

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCC------C--------cceeeEeec
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGL------P--------AATSTERLD  126 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~------p--------~~~~~ErLd  126 (209)
                      -.+++.|+||+++||+++-|...+..|.+.   |   +.+ ..+|..-.+.+..+.      |        ...+.=++.
T Consensus        21 i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~---~---~~d-~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~g~v~   93 (191)
T 2k5g_A           21 IRFERLLPGPIERVWAWLADADKRARWLAG---G---ELP-RQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLL   93 (191)
T ss_dssp             EEEEEEESSSSHHHHHHHHCHHHHTTTSCC---C---CCC-SSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEEEE
T ss_pred             EEEEEEeCCCHHHHHHHHcCHHHHhhcCCC---C---CCC-ccCCCEEEEEEcCCccccccCcccccccCCCceeEEEEE
Confidence            345678999999999999999888888764   2   222 356766666664310      1        113566788


Q ss_pred             eecCCCCEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       127 ~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      .+++.+ .+.|+...++.+ .....++++.+.+ +   +|.+.-.... .+.   . +....+..-....|++||+.+|+
T Consensus        94 e~~pp~-rl~~~~~~~~~~-~~~~v~~~l~~~~-~---gT~l~~~~~~-~~~---~-~~~~~~~~GW~~~L~~L~~~le~  162 (191)
T 2k5g_A           94 RCEPPR-VLALTWGGGAGE-APSEVLFELSEAG-E---QVRLVLTHTR-LAD---R-AAMLDVAGGWHAHLAVLAGKLAG  162 (191)
T ss_dssp             EEETTT-EEEEECCCCSSS-SCCEEEEEEEECS-S---SEEEEEEEEC-CCS---H-HHHHHHTTTTTTHHHHHHHHHHT
T ss_pred             EecCCC-EEEEEeecCCCC-CCEEEEEEEEEcC-C---CEEEEEEEec-CCC---H-HHHHHHHHhHHHHHHHHHHHHCC
Confidence            888655 577776543322 1234455666542 2   2544333231 121   2 23334455567889999999987


Q ss_pred             c
Q 046151          207 Q  207 (209)
Q Consensus       207 ~  207 (209)
                      .
T Consensus       163 ~  163 (191)
T 2k5g_A          163 Q  163 (191)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=97.62  E-value=0.00042  Score=55.01  Aligned_cols=135  Identities=10%  Similarity=0.051  Sum_probs=68.4

Q ss_pred             CCCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCE
Q 046151           55 SQNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQV  134 (209)
Q Consensus        55 ~~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~  134 (209)
                      .+....=.+++.|+||+++||.++-+-..+..|.+. ..+++.    ..+|..  +.+..|    .+.=++.++++.++ 
T Consensus        15 ~~~~~~i~~~r~~~ap~e~Vw~A~Tdpe~l~~W~~g-~~~~~d----~~~GG~--~~~~~G----~~~g~v~ev~p~~r-   82 (158)
T 3ni8_A           15 YFQGMSFEITEEYYVPPEVLFNAFTDAYTLTRLSRG-SLAEVD----LKVGGK--FSLFSG----SILGEFTEITKPHK-   82 (158)
T ss_dssp             ---CCCEEEEEEESSCHHHHHHHHHCHHHHHHHTTT-SCCEEC----CSTTCE--EEETTT----TEEEEEEEEETTTE-
T ss_pred             CCCCceEEEEEEECCCHHHHHHHhcCHHHHHhhcCC-CccEEE----ccCCCE--EEEecC----CEEEEEEEEeCCcE-
Confidence            445566677889999999999999987777777651 123321    134433  333334    23455666776544 


Q ss_pred             EEEEEeecccCccce-EEEEEEEeecCCCCceEEEEEEeeecCCCCCC--HHHHHHHHHHHHHH-HHHHHHHHHh
Q 046151          135 TGFSIIGGEHRLRNY-RSVTSVHGFNRDGAICTVVLESYVVDVPEGNT--EEDTRLFADTVVKL-NLQKLVSVAE  205 (209)
Q Consensus       135 ~sY~iieG~~p~~~Y-~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~--~e~a~~~i~~v~k~-gL~~Lk~~~E  205 (209)
                      +.|+---.+.+...+ ..++.+.+.. ++  +|.+.-.... .|....  .+.+...+..-... -|++||+.+|
T Consensus        83 lv~tw~~~~~~~~~~s~vt~~l~~~~-~~--~T~ltl~~~g-~~~~~~~~~~~~~~~~~~GW~~~~L~~Lk~~Le  153 (158)
T 3ni8_A           83 IVEKWKFRDWNECDYSTVTVEFISVK-EN--HTKLKLTHNN-IPASNKYNEGGVLERCKNGWTQNFLHNIEVILG  153 (158)
T ss_dssp             EEEEEEETTSCSSCCEEEEEEEEEEE-TT--EEEEEEEEEC-CCSSCTTCCCCHHHHHHHHHHHTHHHHHHHTSC
T ss_pred             EEEEEEecCCCCCCcEEEEEEEEecC-CC--CEEEEEEEEc-cCchhhhccchhHHHHHhChhHHHHHHHHHHhC
Confidence            445443222222222 2334555532 22  3544332222 222221  11123234444555 4899998876

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=97.46  E-value=0.0081  Score=47.86  Aligned_cols=138  Identities=11%  Similarity=0.014  Sum_probs=84.1

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecCC-CCEEEEEE
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDDD-RQVTGFSI  139 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd~-~~~~sY~i  139 (209)
                      ..+|++|+++||.++.|...-+.|-|.+.++++++-+ ++ -.+-.+.++...|..   .+.-+--..|.+ ...+.++.
T Consensus        32 ~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~-~~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~  109 (189)
T 3qsz_A           32 EVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKAT-DT-EQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEA  109 (189)
T ss_dssp             EEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEEC-SS-EEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeec-CC-ceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEc
Confidence            4578999999999999999999999999999988653 22 222334443222331   222222212322 22333333


Q ss_pred             ee-------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          140 IG-------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       140 ie-------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      .-       |-+++..|.+...+.| ++ +  +|.+.....+| |-|.- .-....++....-.-|++|++.+++.+
T Consensus       110 ~~~~~P~~~~~VR~~~~~~~~~i~p-~~-~--~t~vt~~~~~d-p~G~iP~~lvn~~~~~~~~~~l~~L~k~~~~~~  181 (189)
T 3qsz_A          110 VPDYLPLRKGKVRIPRAKGQWTLVP-DA-D--GVDVTYQMHAS-PGGSIPSWLANQTVVETPFGTLKALRSHLRQAH  181 (189)
T ss_dssp             CTTSSCCCTTSEECCCEEEEEEEEE-CS-S--SEEEEEEEEEC-SCSSSCHHHHHHTTTHHHHHHHHHHHHHHTC--
T ss_pred             CCCccCCCCCeEEeeEeeEEEEEEE-CC-C--eEEEEEEEEeC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            11       1124677888888888 43 3  37777777777 44544 333455666667778899999988753

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=97.39  E-value=0.00099  Score=53.04  Aligned_cols=137  Identities=12%  Similarity=0.044  Sum_probs=73.3

Q ss_pred             eeeEEeEEEecChHHHHHHhhcCCCCCccc-cccceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEE
Q 046151           59 CSSLLAQRIRAPNDVVWSIVRRFDQPQTYK-HFIKSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        59 ~~~~v~~~I~APa~~VW~vVrdF~~~~~w~-p~V~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      -.=.+++.|+||+++||.++-+-..+..|. |.=-.+...+.+ -.+|..-.+.+.  +|.. -...-+..++++.++ +
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~~~~G~~-~~~~g~~~ev~p~~r-l   89 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHD-LRPGGRVTYFMTGPDGEK-YAGYWEITAVDEPHS-F   89 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHHHSHHHHHHHHCCTTSCCEEEEEC-CSTTCEEEEEEECTTSCE-EEEEEEEEEEETTTE-E
T ss_pred             CEEEEEEEEcCCHHHHHHHhCCHHHHhhEeCCCCeeeeEEEEc-ccCCcEEEEEEECCCCCE-EeeEEEEEEEeCCcE-E
Confidence            344567899999999999998766655553 210112222222 245544334433  2311 135677888887544 5


Q ss_pred             EEEEe----ecccC--ccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHh
Q 046151          136 GFSII----GGEHR--LRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRL----FADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       136 sY~ii----eG~~p--~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~----~i~~v~k~gL~~Lk~~~E  205 (209)
                      .|+..    +|...  ...-..++++.+.  ++  +|.+.....++     +.++...    -+..-....|++|++.++
T Consensus        90 v~t~~~~~~~g~p~~~~~~s~vt~~l~~~--~~--gT~lt~~~~~~-----~~~~~~~~~~~g~~~GW~~~L~~L~~~l~  160 (168)
T 3uid_A           90 SFLDGFADEDFNPNTDLPVSTNVYTFTEH--DG--GTRATYVGTYA-----SAEALQQVLDMGVIEGASSAINQIDALLT  160 (168)
T ss_dssp             EEEEEEECTTSCBCSSCCCEEEEEEEEEE--TT--EEEEEEEEECS-----CHHHHHHHHHTTHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeeccCCCCcCCCCCcEEEEEEEEEC--CC--CEEEEEEEecC-----CHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence            56653    22211  1122344566654  22  35554333332     1222222    255667889999999988


Q ss_pred             hc
Q 046151          206 SQ  207 (209)
Q Consensus       206 ~~  207 (209)
                      ..
T Consensus       161 ~~  162 (168)
T 3uid_A          161 AT  162 (168)
T ss_dssp             SC
T ss_pred             hh
Confidence            64

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=97.29  E-value=0.0011  Score=50.76  Aligned_cols=125  Identities=8%  Similarity=0.055  Sum_probs=67.3

Q ss_pred             eeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEE
Q 046151           59 CSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        59 ~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      ..-.+++.|+||+++||+++-|...+..|.+.....++      .+|..  +.+.+|.    +.=++.++++. +.+.|+
T Consensus        11 ~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~~~d~------~~Gg~--~~~~~G~----~~g~v~e~~p~-~~l~~~   77 (145)
T 1x53_A           11 CKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLEA------DRGGK--FHMVDGN----VSGEFTDLVPE-KHIVMK   77 (145)
T ss_dssp             EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBCCC------STTCC--CBBTTTT----EECCEEEEETT-TEEEEE
T ss_pred             cEEEEEEEECCCHHHHHHHhCCHHHHHHhcCCCceEEC------CCCCE--EEEECCe----eEEEEEEEeCC-CEEEEE
Confidence            34456688999999999999998888888643322222      23322  3333441    33455666654 456676


Q ss_pred             EeecccCccce-EEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 046151          139 IIGGEHRLRNY-RSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKL-NLQKLVSVAES  206 (209)
Q Consensus       139 iieG~~p~~~Y-~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~-gL~~Lk~~~E~  206 (209)
                      ....+.+...| ..++.+.+  .++  +|.+....... |.+    +.. .+..-... -|++||+.+|.
T Consensus        78 ~~~~~~~~~~~~~v~~~l~~--~~~--gT~l~~~~~~~-~~~----~~~-~~~~Gw~~~~l~~L~~~le~  137 (145)
T 1x53_A           78 WRFKSWPEGHFATITLTFID--KNG--ETELCMEGRGI-PAP----EEE-RTRQGWQRYYFEGIKQTFGY  137 (145)
T ss_dssp             EEETTSCTTCCEEEEEECCB--CSS--CEEEEEEEEEE-EHH----HHH-HHHHTTHHHHHHHHHHHTCC
T ss_pred             EecCCCCCCCcEEEEEEEEE--CCC--CEEEEEEEECC-CHH----HHH-HHHhchhHHHHHHHHHHHhc
Confidence            64433333322 23334444  232  35443332211 211    223 33334454 79999999885

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=97.17  E-value=0.013  Score=47.29  Aligned_cols=138  Identities=12%  Similarity=0.098  Sum_probs=86.7

Q ss_pred             EeEEE-ecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eee-EeeceecCCCCEE--
Q 046151           63 LAQRI-RAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TST-ERLDILDDDRQVT--  135 (209)
Q Consensus        63 v~~~I-~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~-ErLd~lDd~~~~~--  135 (209)
                      ...+| ++|+++|+.++.|...-+.|.+.+.++++.+-+  + ..+-.+.+....|..   .+. .....+|++...+  
T Consensus        56 ~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~--~-~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~  132 (214)
T 1ln1_A           56 VFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECN--G-ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHV  132 (214)
T ss_dssp             EEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEET--T-EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEE
T ss_pred             EEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccC--C-CEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEE
Confidence            34578 599999999999988888999999999988653  2 455566665434442   222 2223355443322  


Q ss_pred             --EEEEe-------ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          136 --GFSII-------GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       136 --sY~ii-------eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                        ..++-       .|-.+...|.+...+.|.+.+   +|.+......|+ -|.- .--...++....-.-|++|++.++
T Consensus       133 i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~---~t~v~~~~~~Dp-~G~iP~~l~n~~~~~~~~~~l~~l~k~~~  208 (214)
T 1ln1_A          133 ILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKK---GSKVFMYYFDNP-GGQIPSWLINWAAKNGVPNFLKDMARACQ  208 (214)
T ss_dssp             EEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSS---SEEEEEEEEECC-SSCCCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCC---ceEEEEEEEECC-CCcccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence              21221       122246677887788876432   377877777774 4543 333455666666777888888887


Q ss_pred             hc
Q 046151          206 SQ  207 (209)
Q Consensus       206 ~~  207 (209)
                      +.
T Consensus       209 ~y  210 (214)
T 1ln1_A          209 NY  210 (214)
T ss_dssp             TC
T ss_pred             hc
Confidence            64

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.07  E-value=0.0081  Score=46.86  Aligned_cols=132  Identities=11%  Similarity=-0.038  Sum_probs=64.8

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccc-ccc------ceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYK-HFI------KSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQV  134 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~-p~V------~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~  134 (209)
                      .+++.|+||+++||.++-+  .+..|. |..      ..|++. -. |  |.. .....+|...  ..=++.++|+.+ +
T Consensus         7 ~~~r~~~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~~~d-r~-G--G~~-~~~~~~G~~~--~~g~v~ev~pp~-r   76 (155)
T 1zxf_A            7 RHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVD-KK-G--GRW-YEIDEQGEEH--TFGLIRKVDEPD-T   76 (155)
T ss_dssp             EEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEE-TT-T--TEE-ECCCTTTSCC--CCEEEEEEETTT-E
T ss_pred             EEEEEEeCCHHHHHHHHHh--hHHhhcCCCccccCCCceEEEE-CC-C--CEE-EEECCCCCeE--eEEEEEEECCCC-E
Confidence            4567899999999999998  355554 332      234443 11 1  222 2222233211  112566677654 4


Q ss_pred             EEEEEe-ecc---cCccceEEEEEEEeecCCCCceEEEE-EEeeecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          135 TGFSII-GGE---HRLRNYRSVTSVHGFNRDGAICTVVL-ESYVVDVPEGN-TEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       135 ~sY~ii-eG~---~p~~~Y~sti~V~~~~~~g~~~T~v~-~s~~~d~P~g~-~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +.|+-- .++   .+-..-..++++.+.+ +|  +|.+. .-..++ ..+. .++..+..+..-....|++|++.+++.
T Consensus        77 l~~tw~~~~~~~~~~~~~s~vt~~l~~~~-~g--~T~ltl~~~~~~-~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~~  151 (155)
T 1zxf_A           77 LVIGWRLNGFGRIDPDNSSEFTVTFVADG-QK--KTRVDVEHTHFD-RMGTKHAKRVRNGMDKGWPTILQSFQDKIDEE  151 (155)
T ss_dssp             EEEECCCSSSSSCCCSSCCCEEEEEEEET-TT--EEEEEEEECSST-TSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCCCCCCcEEEEEEEEECC-CC--cEEEEEEEeccc-ccccchhHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            667632 221   1212223355666643 22  24332 222222 1111 222333344444678899999988763

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.97  E-value=0.0086  Score=55.16  Aligned_cols=105  Identities=16%  Similarity=0.153  Sum_probs=76.1

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCC-CCCcceEEEEEeecCCCcceeeEee--ceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNF-TMAVGSTRDVNVISGLPAATSTERL--DILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd-~g~vGsvR~lt~~~G~p~~~~~ErL--d~lDd~~~~~sY~ii  140 (209)
                      ++.|+||+++||+.+.+..+++.|.|-...+++..+. ...+|++- +.+..  +..+. -|.  ..+|+.. .+.....
T Consensus         6 ~~~i~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~-~~~~~--~~~w~-~~~~~t~~~~~~-~F~d~~~   80 (516)
T 3oh8_A            6 SHFIPFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTI-FSLPA--GLKWV-ARHDLSGFLNGS-RFTDVCL   80 (516)
T ss_dssp             EEEESSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEE-EECST--TCEEE-EEECGGGCBTTT-EEEEECC
T ss_pred             EEEccCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEE-EecCC--CcEEE-EEEccccccCCC-eEEEEec
Confidence            4679999999999999999988898888899887543 33678777 77643  33444 444  6777665 5677777


Q ss_pred             ecccC-ccceEEEEEEEeecCCCCceEEEEEEeeecCC
Q 046151          141 GGEHR-LRNYRSVTSVHGFNRDGAICTVVLESYVVDVP  177 (209)
Q Consensus       141 eG~~p-~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P  177 (209)
                      .|+++ +..++-+-.+.+.+  +  +|.+.....+..|
T Consensus        81 ~gp~~~~~~w~h~h~f~~~~--~--gt~~~d~~~~~~p  114 (516)
T 3oh8_A           81 TAPVKALANWRHVHNFVDQD--G--GTLITDSVSTRLP  114 (516)
T ss_dssp             SCSSGGGSSCEEEEEEEEET--T--EEEEEEEEECSSC
T ss_pred             cCcccceeeeEEEEEEEEcC--C--CcEEEEEEEeeCc
Confidence            77755 66666666776643  2  4888888888777

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=96.95  E-value=0.005  Score=50.08  Aligned_cols=125  Identities=12%  Similarity=0.028  Sum_probs=72.0

Q ss_pred             CCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEE
Q 046151           56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      +....-.+++.|+||+++||.++-|...+..|....      +++ ..+|..-.+.+.       ..=++..+++. +.+
T Consensus        18 ~~~~~i~~~r~i~Appe~Vw~alTdpe~l~~W~~p~------~~d-~~~Gg~~~~~~~-------~~g~v~e~~pp-~rl   82 (181)
T 4fpw_A           18 GEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP------KGD-LREGGNFALQGN-------ASGDILRCEPP-RRL   82 (181)
T ss_dssp             EEEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSCCE------ESC-CSTTCEEEESSS-------CEEECCEEETT-TEE
T ss_pred             CCCceEEEEEEECCCHHHHHHHHcChHHHhhccCCC------ccC-CCCCCEEEEEec-------CCEEEEEEcCC-cEE
Confidence            344566777899999999999999988877785432      122 255554333221       12356667664 557


Q ss_pred             EEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          136 GFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       136 sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      .|+...++.+  ....++.+.+.  ++  +|.+.-..... +    ++ ....+..-....|++|++.+++.
T Consensus        83 ~~tw~~~~~~--~s~vt~~l~~~--~~--gT~Ltl~~~~~-~----~e-~~~~~~~GW~~~L~~L~~~L~G~  142 (181)
T 4fpw_A           83 TISWVYEGKP--DSEVELRLSEE--GD--GTLLELEHATT-S----EQ-MLVEVGVGWEMALDFLGMFIRGD  142 (181)
T ss_dssp             EEEEBCTTSC--CEEEEEEEEEE--TT--EEEEEEEEEES-C----HH-HHHHHHHHHHHHHHHHHHHC---
T ss_pred             EEEEEcCCCC--cEEEEEEEEEC--CC--cEEEEEEEEcC-C----HH-HHHHHHHhHHHHHHHHHHHhCCC
Confidence            7887544332  22345566663  22  36554434332 2    12 23344445688999999998864

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.92  E-value=0.027  Score=44.21  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             EeEEEecCh-HHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           63 LAQRIRAPN-DVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        63 v~~~I~APa-~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      +...|+||+ ++||++|..-.++..|..  -.+.. .|      ..  .+|.-+.+ +...=++..+|+.+ .++|+-..
T Consensus         8 ~e~~i~A~~~~~VW~~IStPegL~~Wfa--d~v~~-~g------~~--~~F~w~~~-~~~~~~v~~~~~~~-~i~FrW~~   74 (136)
T 2lio_A            8 LEYLLNATSKNILWSAISTPTGLEDWFA--DKVVS-DD------KT--VTFCWGKT-EQRQAGIVAIRAYS-FIRFHWLD   74 (136)
T ss_dssp             EEEEECTTSCTHHHHGGGSHHHHTTTSS--SEEEE-ET------TE--EEEESSSS-SEEEEEEEEEETTT-EEEEEESS
T ss_pred             EEEEecCChHHHHHHHhCChhhhhcccC--CCCcc-cC------ce--EEEEeCCC-CcEeEEEEEEcCCC-EEEEEccC
Confidence            346899999 999999999888888863  23432 23      11  22222333 44566777777665 48899864


Q ss_pred             cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          142 GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       142 G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      .+  -.++...+++......+. .++.+-.|.    +.   ++ ..-+...-..-|.+||+.++.+
T Consensus        75 ~~--~~~~~~e~~l~~~~~t~~-~~L~vtdFa----~~---~~-~e~~~~gW~~~l~~Lk~~lg~~  129 (136)
T 2lio_A           75 DE--NERDYFEIKMSYNELTGD-YVLEITDFS----EA---DE-ADDLKELWDSQVSKLRRTCGFL  129 (136)
T ss_dssp             SS--SSSCEEEEEEEECTTTSC-EEEEEEEEE----CH---HH-HHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CC--CCceEEEEEEEecCCCCc-EEEEEecCC----Cc---cc-hhHHHhhHHHHHHHHHHHhhhh
Confidence            32  234555666665432222 344444222    11   12 2235666677788999999876

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=96.54  E-value=0.069  Score=43.85  Aligned_cols=122  Identities=14%  Similarity=0.034  Sum_probs=69.4

Q ss_pred             ceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151           58 QCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        58 ~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      ..+-.+.++++||+++||..+-+-..+..|...   +++   + ..+|..-.  +. +.    ..-++..+|+. +.+.|
T Consensus        31 ~~~l~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~---~~~---d-~r~GG~~~--~~-~~----~~g~v~ev~pp-~rL~~   95 (192)
T 2luz_A           31 ARSIIIRQRYDAPVDEVWSACTDPNRINRWFIE---PKG---D-LREGGNFA--LQ-GN----ASGDILRCEPP-RRLTI   95 (192)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHHCHHHHTTTSCC---EEE---C-CSTTSEEE--ET-TS----EEEEEEEEETT-TEEEE
T ss_pred             ceEEEEEEEeCCCHHHHHHHHcCHHHHheeeCC---Ccc---c-CccCcEEE--ee-cc----ccceEEEEecC-eeEEE
Confidence            345567889999999999999998888888753   333   2 24554322  32 21    22345667764 45667


Q ss_pred             EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      +....+.+  .-..++.+.+.+ +   +|.+.-.-.. .|    ++.+..+..+ -...|++|++.+++
T Consensus        96 tw~~~~~~--~~~vt~~L~~~g-~---gT~Ltl~h~~-~~----~~~~~~~~~G-W~~~Ld~L~~~L~g  152 (192)
T 2luz_A           96 SWVYEGKP--DSEVELRLSEEG-D---GTLLELEHAT-TS----EQMLVEVGVG-WEMALDFLGMFIRG  152 (192)
T ss_dssp             EEEESSSC--EEEEEEEEEEET-T---EEEEEEEEEE-SC----HHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred             EEeecCCC--CceEEEEEEEcC-C---cEEEEEEEEC-CC----HHHHHHHhcc-HHHHHHHHHHHhCC
Confidence            75433222  123344556543 2   3543222222 12    3334444444 47789999999986

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=94.79  E-value=1.1  Score=36.51  Aligned_cols=148  Identities=9%  Similarity=-0.019  Sum_probs=80.9

Q ss_pred             CCceeeEEeEEEecChHHHHHHh--hcCCCCCccccccceeEEccCCCCCcceE-EEEEeec-CCCcc---eee-Eeece
Q 046151           56 QNQCSSLLAQRIRAPNDVVWSIV--RRFDQPQTYKHFIKSCSVSDNFTMAVGST-RDVNVIS-GLPAA---TST-ERLDI  127 (209)
Q Consensus        56 ~~~~~~~v~~~I~APa~~VW~vV--rdF~~~~~w~p~V~s~e~~eGd~g~vGsv-R~lt~~~-G~p~~---~~~-ErLd~  127 (209)
                      +..+.-. ..+|++|+++|+.++  .|...-+.|-+.+..+++++-.++. ..| +.++... +.|+.   .+. .....
T Consensus        65 ~~~~~k~-~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~~-~~i~~~~~~~~~~~~v~~RDfv~~r~~~~  142 (231)
T 2r55_A           65 PGNLYRG-EGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDT-LCVSRTSTPSAAMKLISPRDFVDLVLVKR  142 (231)
T ss_dssp             SSEEEEE-EEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSS-EEEEEEECCCBTTTTBCCEEEEEEEEEEE
T ss_pred             CCcEEEE-EEEECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEcCCC-EEEEEEEeccccCCccCCCeEEEEEEEEE
Confidence            3444433 357899999999999  7888888999999999987543222 222 3222111 12331   121 22222


Q ss_pred             ecCCCCEE-EEEEee-------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHH
Q 046151          128 LDDDRQVT-GFSIIG-------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQ  198 (209)
Q Consensus       128 lDd~~~~~-sY~iie-------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~  198 (209)
                      +++....+ ..++.-       |-.+...+.+...++|...++ .+|.+.+....| |-|+- ..-+..++....-.-|+
T Consensus       143 ~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~-~~t~vt~~~~~D-p~G~iP~~lvn~~~~~~~~~~~~  220 (231)
T 2r55_A          143 YEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEP-TKTNLVTFFHTD-LSGYLPQNVVDSFFPRSMTRFYA  220 (231)
T ss_dssp             CTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--C-CCEEEEEEECEE-CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCC-CcEEEEEEEEeC-CCCCccHHHHHHHHhHhHHHHHH
Confidence            23322332 333321       112334445555677764222 247788877776 55554 33345566656667788


Q ss_pred             HHHHHHhhc
Q 046151          199 KLVSVAESQ  207 (209)
Q Consensus       199 ~Lk~~~E~~  207 (209)
                      +|++.+++.
T Consensus       221 ~Lr~~~~~~  229 (231)
T 2r55_A          221 NLQKAVKQF  229 (231)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHHHh
Confidence            888888764

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=94.35  E-value=1.1  Score=36.49  Aligned_cols=142  Identities=11%  Similarity=-0.000  Sum_probs=78.9

Q ss_pred             EeEEEecChHHHH-HHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeec--CCCcc---eeeEeeceecCCCCEEE
Q 046151           63 LAQRIRAPNDVVW-SIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIS--GLPAA---TSTERLDILDDDRQVTG  136 (209)
Q Consensus        63 v~~~I~APa~~VW-~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~--G~p~~---~~~ErLd~lDd~~~~~s  136 (209)
                      +...|++|+++|+ .++.|...-+.|-+.+..+++++-.+...--+..++ ..  +.|+.   .+.-|--..++....+.
T Consensus        70 ~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~~~~~-~p~~~~~~~~RDfv~~r~~~~~~~~~vi~  148 (229)
T 1em2_A           70 LKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVS-AGAAGGVVSPRDFVNVRRIERRRDRYLSS  148 (229)
T ss_dssp             EEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEE-CCBTTTTBCCEEEEEEEEEEECSSEEEEE
T ss_pred             EEEEecCCHHHHHHHHHhCccchhhcccccceEEEEEecCCCeEEEEEEe-cCcCCCCcCCCeeEEEEEEEEcCCEEEEE
Confidence            3456799999999 778888888899999999998754322211123222 22  23432   12112112223322222


Q ss_pred             EEEee--------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          137 FSIIG--------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       137 Y~iie--------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      .+=++        |-++...+.+...+.|...+. ..|.+.+....| |-|+- .--...++....-.=|++|++.++++
T Consensus       149 ~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~-~~t~vt~~~~~D-p~G~iP~~l~n~~~~~~~~~~~~~Lr~~~~~~  226 (229)
T 1em2_A          149 GIATSHSAKPPTHKYVRGENGPGGMIVLKSASNP-RVCTFVWILNTD-LKGRLPRYLIHQSLAATMFEFAFHLRQRISEL  226 (229)
T ss_dssp             EEECCCTTSCCCTTSEECEECSEEEEEEECSSCT-TCEEEEEEECEE-CCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EecccCCCCCCCCCCEeeeecccEEEEEecCCCC-CcEEEEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22121        223455566667778764322 247777777776 55543 22234555555556678888887764

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=94.26  E-value=0.33  Score=39.14  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=50.6

Q ss_pred             HHHHHH-hhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee-cccCccce
Q 046151           72 DVVWSI-VRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG-GEHRLRNY  149 (209)
Q Consensus        72 ~~VW~v-VrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie-G~~p~~~Y  149 (209)
                      ++||.- +++-.+|+.+.|.|.+|++.+..  .-.-+|.++|..+    .++|+...+-+  .++.|.+-. |.++....
T Consensus        23 ~QlW~GL~~kar~p~~Fvp~i~~c~Vlse~--~~~~~R~l~fg~~----~i~e~vtl~~~--~~v~f~~~~t~~~~gs~l   94 (157)
T 2ffs_A           23 LQLWEGLVCRAREPQYFVVGLERFEILVDD--GDRLHRRLYLPGL----VVEDEVVLKAP--DSAHYSIKPSAEVAGGSL   94 (157)
T ss_dssp             HHHHHHHHHHHHCGGGTCTTCCEEEEEEEC--SSEEEEEEEETTE----EEEEEEEEETT--TEEEEEECCCSSSBEEEE
T ss_pred             HHHHHHHHHHhcChhhcccccCeEEEEecC--CCeEEEEEEECCC----ccceEEEEcCC--cEEEEEcccccCCCCceE
Confidence            689998 44677899999999999998543  2367899999644    68888876543  458888865 34444433

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=94.20  E-value=1.3  Score=36.19  Aligned_cols=146  Identities=8%  Similarity=-0.066  Sum_probs=80.4

Q ss_pred             CCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCC--cc---eeeEe-eceec
Q 046151           56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLP--AA---TSTER-LDILD  129 (209)
Q Consensus        56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p--~~---~~~Er-Ld~lD  129 (209)
                      +.++.-. ..+|+||+++|++++.|...-+.|-+.+..+++++-.++.. .|-...+....+  .+   .+.-| ....+
T Consensus        65 ~~~~~k~-~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~  142 (224)
T 1jss_A           65 NGYLYKA-QGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENC-CVMRYTTAGQLLNIISPREFVDFSYTVGYE  142 (224)
T ss_dssp             SSEEEEE-EEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTE-EEEEEEECCBTTTTBCCEEEEEEEEEEEET
T ss_pred             CceEEEE-EEEEeCCHHHHHHHHhCcccccccccceeeEEEEEEcCCCe-EEEEEEcccccCCCCCCCeEEEEEEEEEcC
Confidence            4455444 45789999999999998777789999999999875432222 232222222211  21   11111 12223


Q ss_pred             CCCCEEE-EEEe-----ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 046151          130 DDRQVTG-FSII-----GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNT-EEDTRLFADTVVKLNLQKLVS  202 (209)
Q Consensus       130 d~~~~~s-Y~ii-----eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~-~e~a~~~i~~v~k~gL~~Lk~  202 (209)
                       +...+. .++.     .|-++..++.+...+.|.+++ ...|.+.+-...| |-|.- .--...++......=+++|++
T Consensus       143 -~~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~-~~~t~vt~~~~~D-p~G~iP~~lvn~~~~~~~~~~~~~Lr~  219 (224)
T 1jss_A          143 -EGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDS-PSQSLLTGYIQTD-LRGMIPQSAVDTAMASTLANFYSDLRK  219 (224)
T ss_dssp             -TEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTE-EEEEEEEEEECEE-CCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CeEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCC-CCceEEEEEEEeC-CCCCccHHHHHHHHHHhHHHHHHHHHH
Confidence             222221 2221     122345556666677876532 1357777777776 55543 333345555555666777777


Q ss_pred             HHhh
Q 046151          203 VAES  206 (209)
Q Consensus       203 ~~E~  206 (209)
                      .+++
T Consensus       220 ~~~~  223 (224)
T 1jss_A          220 GLRK  223 (224)
T ss_dssp             HTC-
T ss_pred             HHhh
Confidence            7654

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=93.64  E-value=2  Score=34.74  Aligned_cols=145  Identities=11%  Similarity=0.009  Sum_probs=77.7

Q ss_pred             CceeeEEeEEEecChHHHHHHh-hcCCCCCccccccceeEEccCCCCCcceEEEEEeec--CCCcc---eeeEeeceecC
Q 046151           57 NQCSSLLAQRIRAPNDVVWSIV-RRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVIS--GLPAA---TSTERLDILDD  130 (209)
Q Consensus        57 ~~~~~~v~~~I~APa~~VW~vV-rdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~--G~p~~---~~~ErLd~lDd  130 (209)
                      .++.-. ..+|++|+++||.++ .|+..-+.|-+.+.++++++-.+... .|-......  ..|..   .+.=|--.-++
T Consensus        54 g~~~k~-~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~  131 (221)
T 3p0l_A           54 GKVFRL-EVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDT-FITHELAAEAAGNLVGPRDFVSVRCAKRRG  131 (221)
T ss_dssp             CEEEEE-EEEESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSE-EEEEEEECC---CCSCCEEEEEEEEEEECS
T ss_pred             ceEEEE-EEEEcCCHHHHHHHHHhccchhhhcCcchheEEEEEecCCCe-EEEEEeeccccCCccCCceEEEEEEEEEcC
Confidence            344443 357899999999998 58888889999999999875532222 122222222  22331   11111111123


Q ss_pred             CCCEEE-EEEee-------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHH-HHHHHHHHHHHHHHHHHH
Q 046151          131 DRQVTG-FSIIG-------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE-DTRLFADTVVKLNLQKLV  201 (209)
Q Consensus       131 ~~~~~s-Y~iie-------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e-~a~~~i~~v~k~gL~~Lk  201 (209)
                      ....+. .++.-       |-++...+.+...+.|.+++ ..+|.+.+....| |-|.--. -+..++....-.-|++|+
T Consensus       132 ~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~~~t~vt~~~~~D-p~G~iP~~lvn~~~~~~~~~~~~~Lr  209 (221)
T 3p0l_A          132 STCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGS-PSKTKLTWLLSID-LKGWLPKSIINQVLSQTQVDFANHLR  209 (221)
T ss_dssp             SCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTE-EEEEEEEEEECEE-CCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCC-CCcEEEEEEEEec-CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            222221 22211       11234445566677876532 2257777777776 5565322 334454444445677888


Q ss_pred             HHHh
Q 046151          202 SVAE  205 (209)
Q Consensus       202 ~~~E  205 (209)
                      +.++
T Consensus       210 ~~~~  213 (221)
T 3p0l_A          210 KRLE  213 (221)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            7776

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=90.83  E-value=5.5  Score=33.01  Aligned_cols=136  Identities=11%  Similarity=0.031  Sum_probs=76.0

Q ss_pred             eEEEecChHHHHH-HhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---ee--eEeeceecCCCCEEEE
Q 046151           64 AQRIRAPNDVVWS-IVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TS--TERLDILDDDRQVTGF  137 (209)
Q Consensus        64 ~~~I~APa~~VW~-vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~--~ErLd~lDd~~~~~sY  137 (209)
                      ..+|++|+++|+. ++.|   .+.|-+.+..+++++-.+... .|-...+....|+.   .+  +-....+++....+..
T Consensus        80 ~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~id~~~-~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~  155 (237)
T 2pso_A           80 SVEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQT-EIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVS  155 (237)
T ss_dssp             EEEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTE-EEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEE
T ss_pred             EEEEcCChHHHHHHHHhh---hhhHHhhhceEEEEEEcCCCc-EEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEE
Confidence            4578999999875 5666   679999999999886532111 23334444333332   22  2222233455555544


Q ss_pred             EEeec-------ccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          138 SIIGG-------EHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       138 ~iieG-------~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      +-++-       -++...+.+...+.|.+. +  +|.+.+-...| |-|.--.-...++....-.-|.+|++.++++
T Consensus       156 ~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~-~--~t~vt~~~~~D-p~G~iP~~ln~~~~~~~~~~l~~LR~~~~~~  228 (237)
T 2pso_A          156 LSVEHEEAQLLGGVRAVVMDSQYLIEPCGS-G--KSRLTHICRID-LKGHSPEWYSKGFGHLCAAEVARIRNSFQPL  228 (237)
T ss_dssp             EECCCTTCCCCSSEECCEEEEEEEEEECST-T--CEEEEEEEEEC-CSSSCTTTTTTHHHHHHHHHHHHHHHTTSCC
T ss_pred             EcccCCCCCCCCcEEEEEeccEEEEEECCC-C--CEEEEEEEEeC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            43332       234555666667787642 2  47787777776 3343322222333333334688888887764

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=85.70  E-value=14  Score=30.41  Aligned_cols=52  Identities=12%  Similarity=0.081  Sum_probs=38.8

Q ss_pred             EE-ecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCc
Q 046151           66 RI-RAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPA  118 (209)
Q Consensus        66 ~I-~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~  118 (209)
                      .| ++|+++|+.++.|+...+.|-+.+.++++++-.+ .-+.|-...++...|.
T Consensus        80 ~~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~i~-~~~~i~y~~~~~p~p~  132 (255)
T 2e3n_A           80 AVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLA-DNAIIIYQTHKRVWPA  132 (255)
T ss_dssp             EEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEEEE-TTEEEEEEEECCCTTS
T ss_pred             EEcCCCHHHHHHHHhCcchHhhhhhhcceeEEEEEcC-CCCEEEEEEeecCCCc
Confidence            45 5999999999999999999999999999886521 1135666666554454

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=84.24  E-value=9  Score=32.54  Aligned_cols=109  Identities=8%  Similarity=-0.033  Sum_probs=61.9

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecC-CCc---ceeeEeece--ecCCC-CEE
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISG-LPA---ATSTERLDI--LDDDR-QVT  135 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G-~p~---~~~~ErLd~--lDd~~-~~~  135 (209)
                      +..+|+||++.||.++.|...-+.|.+.+.++++++-.++. -.|-.+....- .+.   ..+.-|--.  .++.+ ..+
T Consensus        92 ~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi  170 (258)
T 3fo5_A           92 MEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDPYVI  170 (258)
T ss_dssp             EEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSSTTCCEEE
T ss_pred             EEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-eEEEEEecCCccCCCCCCEEEEEEEEEeccCCCCEEEE
Confidence            44679999999999999988888999999999987432112 12333433221 122   122222221  22332 344


Q ss_pred             EEE-Eee-------cccCccceEEEEEEEeecCCCCceEEEEEEeeec
Q 046151          136 GFS-IIG-------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVD  175 (209)
Q Consensus       136 sY~-iie-------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d  175 (209)
                      ..+ +.-       |-.+..++.+...+.|.+++   .|.+......|
T Consensus       171 ~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~---~t~VtY~~q~d  215 (258)
T 3fo5_A          171 ALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQ---LTKVSYYNQAT  215 (258)
T ss_dssp             EEEEEECTTSCCCTTSEECCCSSEEEEEEEEETT---EEEEEEEESCC
T ss_pred             EEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCC---CEEEEEEEeeC
Confidence            333 321       22245566777788887543   35555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	5e-16
d3cnwa1	138	d.129.3.8 (A:3-140) Uncharacterized protein XoxI {	8e-16
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	1e-15
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	4e-14
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	6e-11
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	2e-09
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	5e-09

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score = 69.9 bits (171), Expect = 5e-16
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 75  WSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDR 132
              V   D   P+      KS  +  +     G+ + + +  G P  T T R+D ++ + 
Sbjct: 20  QGFVIDVDTVLPKAAPGAYKSVEIKGD--GGPGTLKIITLPDGGPITTMTLRIDGVNKEA 77

Query: 133 QVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNTEEDTRLFA 189
               +S+I G+  L    S+ +          G+IC      +         EE+ +   
Sbjct: 78  LTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI-FHTKGDAVVPEENIKYAN 136

Query: 190 DTVVKL 195
           +    L
Sbjct: 137 EQNTAL 142

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

 Score = 69.1 bits (168), Expect = 8e-16
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 64  AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTE 123
           +  I    + VW ++  F+    +  +I S  +++           V  ++     T  E
Sbjct: 7   SMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG--------GRVRHLANPDGDTIIE 58

Query: 124 RLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEE 183
           RL++ +D  +   +SI+     + NY S   V          T ++E      P   ++E
Sbjct: 59  RLEVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESN---TSLVEWSGTFTPVEVSDE 115

Query: 184 DTRLFADTVVKLNLQKL 200
           +       +    L+ L
Sbjct: 116 EAINLFHGIYSDGLKAL 132

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score = 68.8 bits (168), Expect = 1e-15
 Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 67  IRAPNDVVWSI-VRRFD--QPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTE 123
              P   ++   +   D   P+     I S    +      G+ + +N   G P     +
Sbjct: 11  SVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEG-NGGPGTIKKINFPEGFPFKYVKD 69

Query: 124 RLDILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGN 180
           R+D +D       +S+I G         +++          G +  +  + +     E  
Sbjct: 70  RVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVK 129

Query: 181 TEEDTRLFADTVVKL 195
             E  +   +    L
Sbjct: 130 -AEQVKASKEMGETL 143

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 64.9 bits (158), Expect = 4e-14
 Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 69  APNDVVWSIVRRFD--QPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
            P  +  + V   D   P+     IK   + +      G+ + +    G        ++D
Sbjct: 14  PPPRLFKAFVLDADNLVPKIAPQAIKHSEILEG-DGGPGTIKKITFGEGSQYGYVKHKID 72

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNTEE 183
            +D +     +++I G+        ++           G+I       +     E   E 
Sbjct: 73  SIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEH 132

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 56.4 bits (136), Expect = 6e-11
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 69  APNDVVWSIVRRFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDI 127
           AP  +  ++V+  D         I+S    +      G+ + + +I G        +++ 
Sbjct: 14  APARLYKALVKDADAIIPKAVEAIQSIETVEG-NGGPGTIKKLTLIEGGETKYVLHKIEA 72

Query: 128 LDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNTEE 183
           +D+      +SI+GG         ++           G+I  V ++       + N EE
Sbjct: 73  VDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEE 131

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 8/122 (6%)

Query: 69  APNDVVWSIVRRFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDI 127
           AP  +  ++ +  D   Q     I+S  + +     VG+ + +    G   +   +++D 
Sbjct: 14  APAKLYKALTKDSDTIAQKIDGPIQSIELVEG-NGGVGTIKKITANEGDKTSFVLQKVDA 72

Query: 128 LDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVD---VPEGNT 181
           +D+      +SI+GG     +   ++        +  G+I  V L+ +      + +   
Sbjct: 73  IDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVR 132

Query: 182 EE 183
           ++
Sbjct: 133 DD 134

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score = 51.1 bits (122), Expect = 5e-09
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 11/121 (9%)

Query: 69  APNDVVWSIVRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLD 126
           AP  +  ++ +  D+  P+  +       V  N     G+ + +  I     +    +LD
Sbjct: 14  APAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN--GGPGTIKKIIAIHDGHTSFVLHKLD 71

Query: 127 ILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGF---NRDGAICTVVLESYVVDVPEGNTEE 183
            +D+      +SIIGGE    +   ++           G+I  + ++ +     +G+   
Sbjct: 72  AIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFH----TKGDVLS 127

Query: 184 D 184
           +
Sbjct: 128 E 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.96
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	99.92
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	99.88
d1fm4a_	159	Major tree pollen allergen {European white birch (	99.88
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	99.86
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	99.85
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	99.84
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.57
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.5
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.41
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.31
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.25
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.15
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	98.69
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	98.64
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	98.23
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	97.94
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	97.72
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	97.68
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	97.59
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	97.58
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	97.55
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	97.51
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	97.45
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	96.79
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	96.69
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	96.05
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	95.63
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	93.99
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	91.83
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	85.21

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.96  E-value=3e-28  Score=188.70  Aligned_cols=134  Identities=19%  Similarity=0.301  Sum_probs=120.3

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      .+.+++|+|||++||++|+||++++.|+|.|.+|+..+|     |++|.+++.+|   ..+.|||+.+|+.+|+++|+++
T Consensus         4 ~~~si~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~~-----G~~R~~~~~~g---~~~~E~l~~~d~~~~~~~y~~~   75 (138)
T d3cnwa1           4 TTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLANPDG---DTIIERLEVFNDKERYYTYSIM   75 (138)
T ss_dssp             EEEEEEESSCHHHHHHHHCCTTCGGGTCTTCSEEEEEGG-----GTEEEEECTTC---CEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEEeCCHHHHHHHHhCccchHHHhcccceeEeecC-----ceeEEEEecCC---ceeEEEEEEEeCCCcEEEEEEe
Confidence            445678999999999999999999999999999998643     99999999877   6899999999999999999999


Q ss_pred             ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          141 GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       141 eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      +|++|+++|.++++|.|.++++  +|.+.|...|+ |++..++.+..++.++|++||++||+...
T Consensus        76 ~~~~p~~~~~~~~~l~p~~~g~--~t~v~w~~~f~-p~~~~~~~~~~~~~~~~~~~l~~L~~~f~  137 (138)
T d3cnwa1          76 NAPFPVTNYLSTIQVKEGTESN--TSLVEWSGTFT-PVEVSDEEAINLFHGIYSDGLKALQQAFL  137 (138)
T ss_dssp             ECSSSEEEEEEEEEEEECSSTT--CEEEEEEEEEE-ESSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceeeEEEEEEEECCCCC--eEEEEEEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999976544  48999999997 56778888899999999999999998763

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=99.92  E-value=2.8e-25  Score=177.24  Aligned_cols=128  Identities=14%  Similarity=0.160  Sum_probs=100.9

Q ss_pred             eEEEecChHHHHH-HhhcCCC-CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           64 AQRIRAPNDVVWS-IVRRFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        64 ~~~I~APa~~VW~-vVrdF~~-~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      ...+.+||+++|. +++||++ ++++++.|++|++++|| |++||||.|+|..|+|..+++|||+.+|+++|+|+|+|++
T Consensus         8 E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGd-g~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~~~y~iiE   86 (147)
T d1txca1           8 ETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGN-GGVGTIKKITANEGDKTSFVLQKVDAIDEANLGYDYSIVG   86 (147)
T ss_dssp             EEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESS-SSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             EEeccCCHHHHHHhhhcccccCccccccccccceeecCC-CCcceEEEEEEcCCCcceEEEEEEEEEccCCcEEEEEEEc
Confidence            4567899999996 6779999 57888889999999997 6899999999999998889999999999999999999999


Q ss_pred             cccC---ccceEEEEEEEeecCCCCceEEEEEEeeecC-----CCCCCHHHHHHHHHHHHHH
Q 046151          142 GEHR---LRNYRSVTSVHGFNRDGAICTVVLESYVVDV-----PEGNTEEDTRLFADTVVKL  195 (209)
Q Consensus       142 G~~p---~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~-----P~g~~~e~a~~~i~~v~k~  195 (209)
                      |+.+   +.+|..++.+.|..++   +|++-|+..|++     |+++..+++.....++||+
T Consensus        87 Gd~l~~~~~s~~~~~~~~~~~~g---gs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~Ka  145 (147)
T d1txca1          87 GTGLPESLEKLSFETKVVAGSGG---GSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKA  145 (147)
T ss_dssp             STTSCTTEEEEEEEEEEEECSTT---CEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCccccceEEEEEEEEEecCCCC---CcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhhee
Confidence            9864   5566666777765433   478888888752     2222223345566666654

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=99.88  E-value=3.3e-22  Score=161.31  Aligned_cols=116  Identities=10%  Similarity=0.137  Sum_probs=93.7

Q ss_pred             EeEEEecChHHHHHH-hhcCCC--CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEE
Q 046151           63 LAQRIRAPNDVVWSI-VRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSI  139 (209)
Q Consensus        63 v~~~I~APa~~VW~v-VrdF~~--~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~i  139 (209)
                      ....+++||+++|.+ ++||++  |+.++..|++|++++|| |++||||.|+|..|+|..+++|||+.+|+++|+++|+|
T Consensus         7 ~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGd-g~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~~~y~v   85 (159)
T d1e09a_           7 SEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGD-GGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTL   85 (159)
T ss_dssp             EEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESS-SSTTCEEEEEECCSSSCEEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCC-CCcCcEEEEEEcCCCCcEEEEEEEEEEcccccEEEEEE
Confidence            345679999999988 679988  67788889999999997 58999999999999999999999999999999999999


Q ss_pred             eecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC
Q 046151          140 IGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG  179 (209)
Q Consensus       140 ieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g  179 (209)
                      |+|++++..|++..........+..+|++-|...++...+
T Consensus        86 iEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~  125 (159)
T d1e09a_          86 IEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGN  125 (159)
T ss_dssp             CCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSS
T ss_pred             EecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCC
Confidence            9999877777665532222222223588999888874333

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=99.88  E-value=3.9e-22  Score=160.81  Aligned_cols=108  Identities=17%  Similarity=0.191  Sum_probs=93.1

Q ss_pred             eEEEecChHHHHHH-hhcCCC--CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSI-VRRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~v-VrdF~~--~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      ...+++||+++|++ ++||++  |+.+|..|++|++++|+ |++||||.|+|..|+|..+++|||+.+|+++|+|+|+++
T Consensus         8 E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGd-g~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~y~vi   86 (159)
T d1fm4a_           8 EATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGN-GGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVI   86 (159)
T ss_dssp             EEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECS-SSTTCEEEEECCTTSSSSEEEEEEEEEETTTTEEEEEEE
T ss_pred             EeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCC-CCCCCEEEEEecCCCCceEEEEEEEEEcccccEEEEEEE
Confidence            34679999999997 679998  67888899999999997 689999999999999999999999999999999999999


Q ss_pred             ecccC---ccceEEEEEEEeecCCCCceEEEEEEeeec
Q 046151          141 GGEHR---LRNYRSVTSVHGFNRDGAICTVVLESYVVD  175 (209)
Q Consensus       141 eG~~p---~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d  175 (209)
                      +|++.   ++.|++++++.+.+++   +|++-|...++
T Consensus        87 EGd~l~~~~~s~~~~~k~~~~~~g---g~v~kwt~eYe  121 (159)
T d1fm4a_          87 EGGPVGDTLEKISNEIKIVATPDG---GCVLKISNKYH  121 (159)
T ss_dssp             EBTTBTTTEEEEEEEEEEEECTTS---CEEEEEEEEEE
T ss_pred             eccccccceEEEEEEEEEecCCCC---ceEEEEEEEEE
Confidence            99963   5666778888876543   37888877775

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.86  E-value=2.3e-22  Score=162.30  Aligned_cols=109  Identities=12%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             eEEEecChHHHHHH-hhcCCC-CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           64 AQRIRAPNDVVWSI-VRRFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        64 ~~~I~APa~~VW~v-VrdF~~-~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      ...+++||+++|.+ ++|++. ++++++.|++|++++|| |++||||.|+|..|+|..+++||++.+|+++++++|++|+
T Consensus         8 E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGd-G~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~~~y~viE   86 (157)
T d1xdfa1           8 ESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGN-GGPGTIKKLTLIEGGETKYVLHKIEAVDEANLRYNYSIVG   86 (157)
T ss_dssp             EEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESS-SSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTEEEEEEES
T ss_pred             EEeccCCHHHHHHHHhhchhhccccchhheecceeecCC-CCCCcEEEEEEcCCCccEEEEEEEEEEechhcEEEEEEEe
Confidence            45688999999987 579988 57789999999999997 7999999999999999999999999999999999999999


Q ss_pred             cccCc---cceEEEEEEEeecCCCCceEEEEEEeeecC
Q 046151          142 GEHRL---RNYRSVTSVHGFNRDGAICTVVLESYVVDV  176 (209)
Q Consensus       142 G~~p~---~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~  176 (209)
                      |++.+   +.|+.++++.|..++   +|++-|...++.
T Consensus        87 Gd~l~~~~~s~~~~~k~~~~~~g---gsv~k~t~eYe~  121 (157)
T d1xdfa1          87 GVGLPDTIEKISFETKLVEGANG---GSIGKVTIKIET  121 (157)
T ss_dssp             STTSCTTEEEEEEEEEEEECTTS---SEEEEEEEEEEE
T ss_pred             cccccccEEEEEEEEEEEcCCCC---ceEEEEEEEEEE
Confidence            99754   455556677765543   377888777763

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=99.85  E-value=6.5e-21  Score=152.95  Aligned_cols=111  Identities=14%  Similarity=0.150  Sum_probs=90.4

Q ss_pred             eEEEecChHHHHHHh-hcCCC--CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSIV-RRFDQ--PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~vV-rdF~~--~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      ...+++||+++|.++ +|+++  |+..|.+|++|++ +|| |++||||.|+|..|+|..+++||++++|+++++|+|+++
T Consensus         8 E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~svev-eGd-G~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~~~y~vi   85 (153)
T d2bk0a1           8 ELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGD-GGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVI   85 (153)
T ss_dssp             EEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEE-ESS-SSTTCEEEEECCTTSSCCEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEeccCCHHHHHHHHhhcccccccccccceeeEEEE-ECC-CCCCeEEEEEEecCccceeeEEEEEEEecCccEEEEEEE
Confidence            457899999999985 68887  6666668999997 686 799999999999999999999999999999999999999


Q ss_pred             ecccCccce---EEEEEEEeecCCCCceEEEEEEeeecCCCC
Q 046151          141 GGEHRLRNY---RSVTSVHGFNRDGAICTVVLESYVVDVPEG  179 (209)
Q Consensus       141 eG~~p~~~Y---~sti~V~~~~~~g~~~T~v~~s~~~d~P~g  179 (209)
                      +|++.+.+|   +.++++.|.+++   +|++-|...++...+
T Consensus        86 EGd~l~~~y~s~~~~~~~~~~~~g---gsv~k~t~eYe~~~~  124 (153)
T d2bk0a1          86 DGDILLGFIESIENHVVLVPTADG---GSICKTTAIFHTKGD  124 (153)
T ss_dssp             ESGGGTTTEEEEEEEEEEEECTTS---CEEEEEEEEEEESTT
T ss_pred             ecccccccEEEEEEEEEEecCCCC---CeEEEEEEEEEECCC
Confidence            999765555   555566765433   478888777764433

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=99.84  E-value=8.8e-21  Score=152.56  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=92.0

Q ss_pred             EEEecChHHHHHH-hhcCCC-CCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151           65 QRIRAPNDVVWSI-VRRFDQ-PQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        65 ~~I~APa~~VW~v-VrdF~~-~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      ....+||+++|.+ ++|+++ +++++|.|++|++++|| |++||||.|+|..|+|..+++||++++|++||+++|++|+|
T Consensus         9 ~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGd-Gg~GsIk~~~~~~~~~~~~~Kerie~iD~en~~~~y~viEG   87 (155)
T d1icxa_           9 QSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-GGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGG   87 (155)
T ss_dssp             EEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESS-SSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             EEecCCHHHHhhhheeccchhchhhhhheeeeeEecCC-CccceEEEEEeccCCceEEEEEEEEEEcccccEEEEEEEec
Confidence            4678999999998 668888 47788899999999997 79999999999999999999999999999999999999999


Q ss_pred             ccCccce---EEEEEEEeecCCCCceEEEEEEeeecCC
Q 046151          143 EHRLRNY---RSVTSVHGFNRDGAICTVVLESYVVDVP  177 (209)
Q Consensus       143 ~~p~~~Y---~sti~V~~~~~~g~~~T~v~~s~~~d~P  177 (209)
                      ++....|   +.++++.|.+++   +|++-|+..+++.
T Consensus        88 d~l~~~~~~~~~~~k~~~~~~~---g~i~k~t~eYe~~  122 (155)
T d1icxa_          88 EGLDESLEKISYESKILPGPDG---GSIGKINVKFHTK  122 (155)
T ss_dssp             TTSCTTEEEEEEEEEEEECGGG---CEEEEEEEEEEES
T ss_pred             ccccccEEEEEEEEEEecCCCC---CeEEEEEEEEEEC
Confidence            9754444   555666665543   4788888888754

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.57  E-value=8.7e-14  Score=104.07  Aligned_cols=133  Identities=10%  Similarity=0.028  Sum_probs=102.2

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      +.++.|+||+++||+++.|+.+.+.|+|.|++++..+.  ...|+...+++..+   ..+..++..+++. ++++|+...
T Consensus         4 s~si~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~--~~~G~~~~~~~~~~---~~~~~~v~~~~p~-~~~~~~~~~   77 (137)
T d2b79a1           4 SFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGE--FTTGQKGKMKMEDM---PELAFTLVEVREN-QCFSDLTAT   77 (137)
T ss_dssp             EEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSS--SSTTCEEEEEETTS---CCEEEEECCCBTT-TEEEEEEEE
T ss_pred             EEEEEEcCCHHHHHHHHhhhhhCccccCcccceeeccc--ccceEEEEEEEcCC---cceeeeeecccCC-cEEEEEecc
Confidence            34578999999999999999999999999999998644  37899999998655   3567788888765 468887633


Q ss_pred             cccCccceEEEEEEEeecCCCCceEEEEEEeeecCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          142 GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVP-EGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       142 G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P-~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                         |+..+.....+.+..+ |  +|.+.+.+.+..+ ...........+...+...|++||+.+|.
T Consensus        78 ---~~~~~~~~~~~~~~~~-g--~t~vt~~~~~~g~~~~~~~~~~~~~v~~~~~~~l~~LK~~~Ea  137 (137)
T d2b79a1          78 ---PFGNVLFEHEILENPD-G--TISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILET  137 (137)
T ss_dssp             ---TTEEEEEEEEEEECTT-S--CEEEEEEEEECSCSCCTTHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred             ---cceeeeeEEEEccCCC-C--cEEEEEEEecccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               4556777777776543 3  3888888888633 33344456677888899999999999984

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.50  E-value=2.8e-13  Score=102.76  Aligned_cols=144  Identities=7%  Similarity=0.003  Sum_probs=103.8

Q ss_pred             CCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEE
Q 046151           56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      +++|..++  +|+||+++||+++.|+.+.+.|.|.+.+|.+.+.+..+++....+...-++. ....+....++...+.+
T Consensus         2 ~~~~e~si--~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (155)
T d2rera1           2 AARTDNSI--VVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGR-VWEWVSHRVPDKGSRTV   78 (155)
T ss_dssp             CEEEEEEE--EESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSC-CCEEEEEEEEEGGGTEE
T ss_pred             CCEEEEEE--EECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeee-eEEEEEEEEEcCCccEE
Confidence            45777774  7999999999999999999999999999998866533444444444322221 23344445567778888


Q ss_pred             EEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeec--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          136 GFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVD--VPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       136 sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d--~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      .|....+ .++..+....++.+.+ +   ||.+.+.+.++  ++.+.........++..++..|++||+.+|+.
T Consensus        79 ~~~~~~~-~~~~~~~~~w~~~~~~-~---gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~  147 (155)
T d2rera1          79 RAHRVET-GPFAYMNLHWTYRAVA-G---GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDR  147 (155)
T ss_dssp             EEEESSC-TTEEEEEEEEEEEEET-T---EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecC-ccceeeEEEEEEeecC-C---ccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            8887544 3577788888888864 2   47777777665  33344455567889999999999999999974

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=2.9e-12  Score=96.49  Aligned_cols=135  Identities=14%  Similarity=0.097  Sum_probs=97.7

Q ss_pred             EEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeeccc
Q 046151           65 QRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGGEH  144 (209)
Q Consensus        65 ~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG~~  144 (209)
                      +.|+||+++||++|.||.+.+.|.|.+++|++.++++...+  ..+.+...+.....+.+. .+++.+..+.|++..|+ 
T Consensus         7 ~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~g~-   82 (146)
T d2d4ra1           7 RYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTR--SRWVAVAMGKKVRWLEEE-EWDDENLRNRFFSPEGD-   82 (146)
T ss_dssp             EEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEE--EEEEEEETTEEEEEEEEE-EEETTTTEEEEEEEEES-
T ss_pred             EEECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcce--EEEEEEeeeeeEEEEEEE-EEcCCCCEEEEEEccCC-
Confidence            57999999999999999999999999999999866532333  333333222112333443 35788899999999886 


Q ss_pred             CccceEEEEEEEeecCCCCceEEEEEEeeecCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          145 RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVP----EGNTEEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       145 p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P----~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                       +..|.++.++.|.+ +   +|.+.+...++..    .+--...+...+...++..|++|++.++.+.
T Consensus        83 -~~~~~g~w~l~~~~-~---gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~s  145 (146)
T d2d4ra1          83 -FDRYEGTWVFLPEG-E---GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS  145 (146)
T ss_dssp             -CSEEEEEEEEEECS-S---SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -cceEEEEEEEEecC-C---ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             45788888999854 2   3777777666532    2234566678888889999999999998754

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.31  E-value=1e-11  Score=95.32  Aligned_cols=80  Identities=10%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEeec
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIGG  142 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iieG  142 (209)
                      +...|++||+++|.++++               .++|++.                ...+||++++|++|++++|++++|
T Consensus         9 ~eveik~~a~kf~~~~~~---------------~~~~~~~----------------~~~KerVe~vD~en~sity~vieG   57 (120)
T d1vjha_           9 VKFDVKCPADKFFSAFVE---------------DTNRPFE----------------KNGKTEIEAVDLVKKTMTIQMSGS   57 (120)
T ss_dssp             EEEEESSCHHHHHHHHHH---------------HTTSCSS----------------TTCEEEEEEEETTTTEEEEEEECT
T ss_pred             EEEEecCCHHHHHHHhhh---------------ccCCCCC----------------cccEEEEEEEcCCCCEEEEEEEee
Confidence            346899999999999953               2234321                244899999999999999999999


Q ss_pred             cc--CccceEEEEEEEeecCCCCceEEEEEEeeec
Q 046151          143 EH--RLRNYRSVTSVHGFNRDGAICTVVLESYVVD  175 (209)
Q Consensus       143 ~~--p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d  175 (209)
                      ++  .++.|+.++++.|.+++  .||++-|...+.
T Consensus        58 dvl~~yksf~~~i~~~p~~~g--~gsi~kwt~eYe   90 (120)
T d1vjha_          58 EIQKYFKTLKGSIAVTPIGVG--DGSHVVWTFHFE   90 (120)
T ss_dssp             TGGGTEEEEEEEEEEEECSSS--SCEEEEEEEEEE
T ss_pred             ccccceeEEEEEEEEEecCCC--CceEEEEEEEEE
Confidence            97  46666777788886543  247888877775

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.25  E-value=1.1e-10  Score=89.16  Aligned_cols=132  Identities=14%  Similarity=0.096  Sum_probs=91.2

Q ss_pred             CCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEE
Q 046151           56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVT  135 (209)
Q Consensus        56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~  135 (209)
                      |-.-+.+++++|+||+++||+++.||.+++.|.+.+.+++..+|.     ..  +..  .+|.+.++-++.. |..++.+
T Consensus         2 p~~~~~~~~i~I~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~~~~-----~~--~~~--~~~~G~~~~~i~~-~~p~~~i   71 (133)
T d2qpva1           2 PVMQSRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADGE-----DW--IAK--GGPLGEVRVNFAP-HNEFGVI   71 (133)
T ss_dssp             CCCCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEETT-----EE--EEE--CSSSCEEEEEECC-CCSSCBC
T ss_pred             CcceEEEEEEEECCCHHHHHHHHhChhhcchhhhccceeEEecCC-----cE--EEE--ecCCCcEEEEEEE-cCCCCEE
Confidence            334466777899999999999999999999999999998877652     22  333  2344556666655 6778889


Q ss_pred             EEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          136 GFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       136 sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      .|+...|+..    ...+.+.+.+++.  +|.+.+.+.  .|++..++.... ....++..|++||+.+|.
T Consensus        72 ~w~~~~~~~~----~g~v~fr~~~~g~--gt~v~~~~~--~ppg~~~~~~~~-~~~~v~~dL~rlK~l~Ea  133 (133)
T d2qpva1          72 DHVVTLPDGL----KVYNALRVTPNGS--GTEVSFTLL--RLEGMTDEDFEQ-DASAITADLEMLKSLLEA  133 (133)
T ss_dssp             CEEEECTTSC----EEEEEEEEEEETT--EEEEEEEEE--CCTTCCHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCC----EEEEEEEEccCCC--eEEEEEEEE--eCCCCchHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            9999877532    1223344443332  477766553  466766665443 444679999999999984

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.15  E-value=7.2e-11  Score=86.91  Aligned_cols=140  Identities=9%  Similarity=-0.032  Sum_probs=87.9

Q ss_pred             ceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151           58 QCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        58 ~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      +++.+  .+|+|||++||+++.|+.+.+.|.|.+++++...+   ..+...........-...........++......+
T Consensus         4 k~e~s--i~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (147)
T d2ns9a1           4 RYEGS--FEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDG---SFTIELRLSLGPLRGDARVRASFEDLEKPSKATVK   78 (147)
T ss_dssp             EEEEE--EEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETT---EEEEEEEEESSSSEEEEEEEEEEEEEETTTEEEEE
T ss_pred             EEEEE--EEEcCCHHHHHHHHhCHhhhhhcccchhheeeccc---ccceeEEEEEEEEeeEeeeeeeeeeecCCcceeEE
Confidence            35566  57999999999999999999999999999887543   22222222221111012234445555555544434


Q ss_pred             EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVP---EGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P---~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      ...........+..+..+.+.+ +   +|.+.|...++.+   ..--.......++..+...|++||+.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~-~---gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~  146 (147)
T d2ns9a1          79 GSGRGAGSTLDFTLRFAVEPSG-G---GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE  146 (147)
T ss_dssp             EEEECSSEEEEEEEEEEEEEET-T---EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EeeeccccceeeEEEEEEEecC-C---CcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4333333355667777777643 2   3667776666532   22234455778888999999999998875

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=98.69  E-value=9.2e-08  Score=73.44  Aligned_cols=141  Identities=9%  Similarity=-0.017  Sum_probs=81.5

Q ss_pred             eeEEeEEEecChHHHHHHhhcCCCCCccc-cccceeEEccCCCCCcceEEEEEee--cCCCcceeeEeeceecCCCCEEE
Q 046151           60 SSLLAQRIRAPNDVVWSIVRRFDQPQTYK-HFIKSCSVSDNFTMAVGSTRDVNVI--SGLPAATSTERLDILDDDRQVTG  136 (209)
Q Consensus        60 ~~~v~~~I~APa~~VW~vVrdF~~~~~w~-p~V~s~e~~eGd~g~vGsvR~lt~~--~G~p~~~~~ErLd~lDd~~~~~s  136 (209)
                      .=.++++|+||+++||+++-|...++.|. |.--++...+.+ ..+|....+.+.  +|. .....-++..+++.++ +.
T Consensus        13 ~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d-~~~gg~~~~~~~~~~g~-~~~~~g~v~~i~~~~r-l~   89 (163)
T d1xuva_          13 EIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFE-PKNGGSWQYIQKDPEGN-EYAFHGVNHDVTEPER-II   89 (163)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEEC-CSTTCEEEEEEECTTSC-EEEEEEEEEEEETTTE-EE
T ss_pred             eEEEEEEeCCCHHHHHHHHcChHHhhhccCCCCccceeeeee-ceeCceEEEEEEecCCC-ceEEEEEEEEecCCCE-EE
Confidence            44566899999999999999987766664 322233443333 345555444443  332 2246778888988866 55


Q ss_pred             EEEe--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          137 FSII--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       137 Y~ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      |+.-  +.+.+......++.+.+.+ ++  +|++.....+..++. .+......+..-...-|++||+.+|++
T Consensus        90 ~tw~~~~~~~~~~~~~v~~~~e~~~-~g--~t~~~~~~~~~~~~~-~~~~~~~g~~~GW~~~L~~L~~~le~~  158 (163)
T d1xuva_          90 STFEFEGLPEKGHVILDTARFEALP-GD--RTKLTSHSVFQTIED-RDGMLQSGMEEGINDSYERLDELLEKM  158 (163)
T ss_dssp             EEEEETTSSSSCCCEEEEEEEEEET-TT--EEEEEEEEECSSHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCCCcEEEEEEEEEeC-CC--cEEEEEEEcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6543  2222333345555666643 33  355555444432211 122223334555677899999999875

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=98.64  E-value=6.5e-07  Score=67.83  Aligned_cols=139  Identities=12%  Similarity=0.044  Sum_probs=94.8

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecC--CCcceeeEeeceecCCCCEEEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISG--LPAATSTERLDILDDDRQVTGFSI  139 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G--~p~~~~~ErLd~lDd~~~~~sY~i  139 (209)
                      .++.+|++||++||++|.|+..-+.|.|.++++++.+..+..-|......+..|  +...... -....+..+..+....
T Consensus         5 ~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   83 (148)
T d1t17a_           5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFA-TRVRRDKDARSIDVSL   83 (148)
T ss_dssp             EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEE-EEEEEETTTCEEEEEE
T ss_pred             eEEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeeeeEEEEE-EEeeecCCceEEEEec
Confidence            466789999999999999999999999999999987543223333333444333  2212222 2234667777777777


Q ss_pred             eecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046151          140 IGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       140 ieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      .+|+  ++.....-.+.+.+ +   +|.|.+...++.+-..-...+..+++.+.+.-++++++.++.+
T Consensus        84 ~~g~--f~~l~~~W~f~~~~-~---~T~V~~~l~fe~~~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~l  145 (148)
T d1t17a_          84 LYGP--FKRLNNGWRFMPEG-D---ATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQL  145 (148)
T ss_dssp             SSTT--SSCEEEEEEEEEET-T---EEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCch--hhhcccceeeccCC-C---ceEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6664  56667777888754 2   4889888888766554455556777777777777888877764

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=98.23  E-value=4.5e-06  Score=61.54  Aligned_cols=134  Identities=13%  Similarity=0.112  Sum_probs=76.1

Q ss_pred             eEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecCCCCEEEEEEe
Q 046151           64 AQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDDDRQVTGFSII  140 (209)
Q Consensus        64 ~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd~~~~~sY~ii  140 (209)
                      ..+|+||+++||++|.|+...+.|.|.+++++..+++. ..+.++ +.+  | |..   ..+.++...+..... .....
T Consensus         6 ~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~-~~~~~~-~~~--g-~~~~~~~~~~~~~~~~~~~~~-~~~~~   79 (147)
T d2pcsa1           6 SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDK-YKADLQ-IGI--A-AVKGKYDAIIEVTDIKPPYHY-KLLVN   79 (147)
T ss_dssp             EEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTE-EEEEEE-ECC--G-GGCEEEEEEEEEEEEETTTEE-EEEEE
T ss_pred             eEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCE-EEEEEE-Eee--c-ceeeeeEEEEEEeccCcccce-eEeec
Confidence            35799999999999999999999999999999886531 122222 222  2 211   344566666666543 33332


Q ss_pred             e-cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCC--C-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          141 G-GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPE--G-NTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       141 e-G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~--g-~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      . +............+.+.. +  .+|.+.+...++..-  . --.......++.++..=+++|++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~-~--~~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~~~f~~~~~~~l~~  146 (147)
T d2pcsa1          80 GEGGPGFVNAEGVIDLTPIN-D--ECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAK  146 (147)
T ss_dssp             EEETTEEEEEEEEEEEEESS-S--SEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhcceeEEeeeccc-C--CcEEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            2 222233333333444322 2  358888877776311  1 122333445555555666666666554

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.94  E-value=0.0002  Score=54.15  Aligned_cols=142  Identities=11%  Similarity=-0.030  Sum_probs=73.3

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccc-cccceeEEccCCCCCcceEEEEEeecC-CCcceeeEeeceecCCCCEEEEE
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYK-HFIKSCSVSDNFTMAVGSTRDVNVISG-LPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~-p~V~s~e~~eGd~g~vGsvR~lt~~~G-~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      =.+.+.|+||+++||.++-|-..+..|. |.--.+...+.+ ..+|..-.+.+... +....+.-++..+++.++ |.|+
T Consensus         9 i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p~~~-i~~t   86 (164)
T d2il5a1           9 VEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEAD-VKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEY-VKMT   86 (164)
T ss_dssp             EEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEEC-CSTTCEEEEEEECGGGCEEEEEEEEEEEETTTE-EEEE
T ss_pred             EEEEEEECCCHHHHHHHHcCHHHHhCcccCCCccceEEEee-cccCceEEEEEecCCcceEEEEEEEEEEcCCCE-EEEE
Confidence            3566789999999999999877766653 322223333333 35665544544321 111245667888877665 5565


Q ss_pred             EeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCC--CCHH----H---HHHHHHHHHHHHHHHHHHHHhhc
Q 046151          139 IIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEG--NTEE----D---TRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       139 iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g--~~~e----~---a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      .--.+.+......++.+.+..+++   |.+........+..  ....    .   ....+..-...-|++||+.+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~e~~~gg---T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~lE~g  161 (164)
T d2il5a1          87 IGMPGLSETQDVIEVEFFERETGG---TQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETS  161 (164)
T ss_dssp             ESCC--CCCCEEEEEEEEECSSSS---EEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EeccCCCCCceEEEEEEEEcCCCC---EEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            421111122223333444433333   55544333322222  1211    1   12233444677789999999864

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=97.72  E-value=0.00018  Score=53.09  Aligned_cols=133  Identities=12%  Similarity=0.068  Sum_probs=71.8

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcccc-ccceeEEccCCCCCcceEEEEEeec--CCCcceeeEeeceecCCCCEEEEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKH-FIKSCSVSDNFTMAVGSTRDVNVIS--GLPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p-~V~s~e~~eGd~g~vGsvR~lt~~~--G~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      .+.++|+||+++||.++-+-..+..|.+ .--.+...+++ ..+|..-.+.+..  ++....+.=++..+++.++ +.|+
T Consensus         5 ~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p~~~-i~~t   82 (143)
T d1z94a1           5 RLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFLAFASGQKHAFGGRYLELVPGER-IRYT   82 (143)
T ss_dssp             EEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEEETTTCCEEEEEEEEEEEETTTE-EEEE
T ss_pred             EEEEEECCCHHHHHHHhcCHHHHhhhhCCCCccceeEeec-cccceeEEEEEeeCCCCcEEEEEEEEEEecCCeE-EEEE
Confidence            3457899999999999998777666632 22233333333 3566554444432  2222234557778887776 5566


Q ss_pred             Ee--ecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          139 II--GGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       139 ii--eG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      ..  +++.+ .....++++.+.+ ++   |.+.-... ..|+....+    .+..-....|++||+.+|+
T Consensus        83 ~~~~~~~~~-~~~~v~~~l~~~~-~g---T~lt~~~~-~~~~~~~~~----~~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          83 DRFDDAGLP-GDMITTITLAPLS-CG---ADLSIVQE-GIPDAIPPE----NCYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             EEESCCC----CEEEEEEEEEET-TE---EEEEEEEE-CCCTTSCHH----HHHHHHHHHHHHHHHHHSC
T ss_pred             EeccCCCCC-CcEEEEEEEEEcC-CC---EEEEEEEE-cCCChhHHH----HHHHHHHHHHHHHHHHHcC
Confidence            43  22222 2233445666653 22   43322222 233333222    2333466779999999985

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.68  E-value=0.00011  Score=55.84  Aligned_cols=140  Identities=9%  Similarity=0.042  Sum_probs=72.9

Q ss_pred             eEEeEEEecChHHHHHHhhcCCCCCccc-cccceeEEccCCCCCcceEEEEEeecC-CCcceeeEeeceecCCCCEEEEE
Q 046151           61 SLLAQRIRAPNDVVWSIVRRFDQPQTYK-HFIKSCSVSDNFTMAVGSTRDVNVISG-LPAATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        61 ~~v~~~I~APa~~VW~vVrdF~~~~~w~-p~V~s~e~~eGd~g~vGsvR~lt~~~G-~p~~~~~ErLd~lDd~~~~~sY~  138 (209)
                      =.++++|+||+++||.++-+-..++.|. |.--.+...+++ -.+|..-.+.+... +......=+...+++.++ +.|+
T Consensus         7 l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~~r-l~~t   84 (165)
T d1xfsa_           7 LMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVD-LRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEKR-LIWT   84 (165)
T ss_dssp             EEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEEC-CSTTCEEEEEEECTTCCEEEEEEEEEEEETTTE-EEEE
T ss_pred             EEEEEEEcCCHHHHHHHHcCHHHHhhcCCCCCccceeeccc-ceeCceEEEEEECCCCceeeEEEEEEEecCCcE-EEEE
Confidence            3567899999999999999877766663 321122232333 35665544444322 222234557777777654 4554


Q ss_pred             --Eeecc------------cCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046151          139 --IIGGE------------HRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       139 --iieG~------------~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                        +.++.            .....-..++++.+.+ +   +|.+.-...+..+ +..+...+..+..-...-|++|++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~---gT~lt~~~~~~~~-~~~~~~~~~g~~~GW~~~l~~L~~~l  159 (165)
T d1xfsa_          85 SALVKNYRPAVPATTSDKECAHIVMTAVIELQPTS-S---GTRYTACAMHNTP-GQRKLHEEMGFHEGWGTTITQLEELL  159 (165)
T ss_dssp             SSEEGGGEECCC-----------CCEEEEEEEECS-S---SEEEEEEEECSSH-HHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             EeecccccccccccccccCCCCccEEEEEEEEEcC-C---cEEEEEEEEcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              32211            1111123344556532 2   2544433332211 11122222224555778899999999


Q ss_pred             hhc
Q 046151          205 ESQ  207 (209)
Q Consensus       205 E~~  207 (209)
                      |+.
T Consensus       160 e~~  162 (165)
T d1xfsa_         160 KQE  162 (165)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            874

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=97.59  E-value=0.0007  Score=49.61  Aligned_cols=135  Identities=7%  Similarity=-0.043  Sum_probs=68.7

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCcccc-ccceeEEccCC-CCCcceEEEEEeecC-CCcceeeEeeceecCCCCE-EEE
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKH-FIKSCSVSDNF-TMAVGSTRDVNVISG-LPAATSTERLDILDDDRQV-TGF  137 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p-~V~s~e~~eGd-~g~vGsvR~lt~~~G-~p~~~~~ErLd~lDd~~~~-~sY  137 (209)
                      .++++|+||+++||.++-|-..+..|.. .--.+...+.+ +..+|.--...+... +....+.=+...+++.++. |++
T Consensus         4 ~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~rl~~t~   83 (143)
T d3elia1           4 RLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQSVGFTW   83 (143)
T ss_dssp             EEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTTEEEEEE
T ss_pred             EEEEEECCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcEEEEEEEEEEcCCCCEEEEEE
Confidence            4678999999999999998777666642 11122111111 123443333333322 1112355678888888652 344


Q ss_pred             EEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046151          138 SIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       138 ~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      .+.+.+ +-....+.+++.-.+.++  +|.+.-.... .|   +. +.......-.+.-|++|++.+
T Consensus        84 ~~~~~~-~~~~~~~~vt~~l~~~~~--gT~l~~~~~~-~~---~~-~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          84 GWHDDD-DRRGAESHVMFIVEPCAK--GARLILDHRE-LG---DD-EMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EEECTT-SCEEEEEEEEEECCBC----CEEEEEEEES-CS---CH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCC-CCCCCcEEEEEEEEEcCC--CEEEEEEEEc-CC---CH-HHHHHHHHHHHHHHHHHHHHh
Confidence            444433 233445555554333232  3544322221 22   12 233344445678888888865

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=97.58  E-value=4.2e-05  Score=57.63  Aligned_cols=135  Identities=10%  Similarity=-0.054  Sum_probs=67.0

Q ss_pred             EeEEEecChHHHHHHhhcCCCCCccccccc-----eeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEE
Q 046151           63 LAQRIRAPNDVVWSIVRRFDQPQTYKHFIK-----SCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGF  137 (209)
Q Consensus        63 v~~~I~APa~~VW~vVrdF~~~~~w~p~V~-----s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY  137 (209)
                      ++++|+||+++||.++-+ .-.+.|+|...     .+.+..+   .-|..+. ...+|.  ..+.=++.++++.++ +.|
T Consensus         8 ~~~~i~Ap~e~Vf~a~te-~~~~Ww~~~~~~~~~~~~~~~~~---~gG~~~~-~~~dG~--~~~~g~v~ei~p~~r-l~~   79 (155)
T d1zxfa1           8 HSVTVKADRKTAFKTFLE-GFPEWWPNNFRTTKVGAPLGVDK---KGGRWYE-IDEQGE--EHTFGLIRKVDEPDT-LVI   79 (155)
T ss_dssp             EEEEESSHHHHHHHHHTT-CSSSSSSGGGSTTTTCSSCEEET---TTTEEEC-CCTTTS--CCCCEEEEEEETTTE-EEE
T ss_pred             EEEEEeCCHHHHHHHHHh-hhHhhcCCCCCCceEEEEEEeeC---CCceEEE-Eccccc--eeeeEEEEEEecCcE-EEE
Confidence            456899999999999986 22334455432     2223222   2243332 222332  223346788888775 567


Q ss_pred             EEeecc--c--CccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046151          138 SIIGGE--H--RLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN-TEEDTRLFADTVVKLNLQKLVSVAESQV  208 (209)
Q Consensus       138 ~iieG~--~--p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~-~~e~a~~~i~~v~k~gL~~Lk~~~E~~~  208 (209)
                      +---++  .  +......++.+.+..++   +|.+.=....-...+. ..+.....+..-...-|++||+.+|+.+
T Consensus        80 tw~~~~~~~~~~~~~s~v~~~~~~~~~~---~T~ltl~h~g~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~~  152 (155)
T d1zxfa1          80 GWRLNGFGRIDPDNSSEFTVTFVADGQK---KTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEEG  152 (155)
T ss_dssp             ECCCSSSSSCCCSSCCCEEEEEEEETTT---EEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             EEecCCccccccccceEEEEEEEecCCC---CEEEEEEEeccCcccchhHHHHHhhhhhhHHHHHHHHHHHhhhhc
Confidence            642211  1  12222344455554433   3533222221111121 1223333444456777899999999753

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=97.55  E-value=0.0004  Score=51.97  Aligned_cols=125  Identities=17%  Similarity=0.105  Sum_probs=67.4

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      ..++.|+||+++||.++-|-..++.|.+.   +.+.    ..+|..  +.+..  +.+...=++.++++. +.+.|+.-.
T Consensus        11 ~~~~~i~ap~e~Vw~alTdp~~l~~W~~~---~~~~----~~~G~~--~~~~~--~~g~~~g~v~~~~p~-~~l~~tw~~   78 (143)
T d1xn6a_          11 KQTIVFNASIQKVWSVVSTAEGIASWFMP---NDFV----LEVGHE--FHVQS--PFGPSPCKVLEIDEP-NHLSFSWDT   78 (143)
T ss_dssp             EEEEEESSCHHHHHHTTSCSHHHHTTSCC---BCCC----CCTTCE--ECBCC--TTCCCCEEEEEEETT-TEEEEEETT
T ss_pred             EEEEEECCCHHHHHHHhcChHHhceEeec---cCcc----cccCce--EEEec--cccceeEEEEEEeCC-cEEEEEEcC
Confidence            34568999999999999998888888642   3221    234443  33321  112344566777775 557788632


Q ss_pred             cccCccceEEEEEEEeecCCCCceEEEE-EEeeecCCC------CCCHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 046151          142 GEHRLRNYRSVTSVHGFNRDGAICTVVL-ESYVVDVPE------GNTEEDTRLFADTVVKLNL-QKLVSVAES  206 (209)
Q Consensus       142 G~~p~~~Y~sti~V~~~~~~g~~~T~v~-~s~~~d~P~------g~~~e~a~~~i~~v~k~gL-~~Lk~~~E~  206 (209)
                      +     ....++.+.+..+++   |.+. .-..++.+.      +.........+..-...-| ++||+.+|+
T Consensus        79 ~-----~~~v~~~l~~~~~G~---T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~lEG  143 (143)
T d1xn6a_          79 D-----GWVVSFDLKDLGDNK---TEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG  143 (143)
T ss_dssp             T-----TEEEEEEEEEEETTE---EEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred             C-----CcEEEEEEEEcCCCc---EEEEEEEeCCCCchhhhhhcchhhHHHHHHHhhCHHHHHHHHHHHHhCC
Confidence            1     234455666654332   4332 211222111      1123333333443333335 789999985

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=97.51  E-value=0.00024  Score=52.27  Aligned_cols=80  Identities=13%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             EEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee
Q 046151           62 LLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG  141 (209)
Q Consensus        62 ~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie  141 (209)
                      .+++.|+||+++||.++-+...+..|.+..   ...    ..+|..-...  .+  ...+.=++..+++.+ .|.|+.-.
T Consensus         8 ~~~~~i~ap~e~Vw~alt~p~~~~~W~~~~---~~~----~~~g~~~~~~--~~--~~~~~g~v~~~~~~~-~l~~~~~~   75 (138)
T d1xn5a_           8 KKEVRFNAPIEKVWEAVSTSEGLAFWFMEN---DLK----AETGHHFHLQ--SP--FGPSPCQVTDVERPI-KLSFTWDT   75 (138)
T ss_dssp             EEEEEESSCHHHHHHHTTSHHHHHTTSCCB---CCC----SCTTCEEEEE--CS--SCEEEEEEEEEETTT-EEEEEETT
T ss_pred             EEEEEECCCHHHHHHHHcCHHHhceEccCC---ccc----ccceeeEEec--CC--ccceeEEEEEEeCCc-EEEEEecC
Confidence            345789999999999999988888887532   111    2345433332  22  234555677788765 57787632


Q ss_pred             cccCccceEEEEEEEee
Q 046151          142 GEHRLRNYRSVTSVHGF  158 (209)
Q Consensus       142 G~~p~~~Y~sti~V~~~  158 (209)
                      +     +...++.+.+.
T Consensus        76 ~-----~~~v~~~l~~~   87 (138)
T d1xn5a_          76 D-----GWSVTFHLKEE   87 (138)
T ss_dssp             T-----TEEEEEEEEEC
T ss_pred             C-----CeEEEEEEEEc
Confidence            2     23445566664

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.45  E-value=0.00044  Score=53.56  Aligned_cols=125  Identities=14%  Similarity=0.078  Sum_probs=72.4

Q ss_pred             CceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEE
Q 046151           57 NQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTG  136 (209)
Q Consensus        57 ~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~s  136 (209)
                      |...=.+.+.|+||+++||+++-+...+..|.+......+      .+|.--.+.+.++    ...-++.++++ ++.+.
T Consensus        10 ~~~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~~d~------~~GG~~~~~~~~~----~~~~~v~~~ep-p~rL~   78 (160)
T d2nn5a1          10 QTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGEL------GVNGFWRFILPDF----EETMPFTDYAE-EKYLG   78 (160)
T ss_dssp             TEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEEC------STTCEEEEEETTE----EEEEEEEEEET-TTEEE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHcCHHHHHhhCCCCCcccc------cCCCeeEEEcCCC----CcceEEEEEec-CCEEE
Confidence            3444566789999999999999998888899875533322      3343334555433    34556777875 55677


Q ss_pred             EEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046151          137 FSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAES  206 (209)
Q Consensus       137 Y~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E~  206 (209)
                      |+--++       .-+..+.+..++   +|++.=.-..  |++..+. +.....+ -..-|++||+.+|+
T Consensus        79 ~tW~~~-------~v~~eL~~~~~~---~t~l~l~~~~--~~~~~~~-~~~~~~G-W~~~Ld~L~~~leg  134 (160)
T d2nn5a1          79 VTWDTG-------IIYFDLKEQAPH---QTLLVFSESL--PENFTTP-RHKDIAG-WSIVLNRLKQVVET  134 (160)
T ss_dssp             EEETTE-------EEEEEEEEEETT---EEEEEEEEEE--CTTCSSC-HHHHHHH-HHHHHHHHHHHHHC
T ss_pred             EEecCc-------eEEEEEecCCCC---eEEEEEEEec--Cccccch-hhhhHHH-HHHHHHHHHHHHcC
Confidence            875211       123455554332   2433222222  3332221 1112233 48889999999987

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=96.79  E-value=0.0055  Score=47.20  Aligned_cols=131  Identities=11%  Similarity=0.029  Sum_probs=69.0

Q ss_pred             eeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCC--------------cceeeEee
Q 046151           60 SSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLP--------------AATSTERL  125 (209)
Q Consensus        60 ~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p--------------~~~~~ErL  125 (209)
                      +=.+.+.|+||+++||+++-+-..+..|.... .+     + ..+|..-.+.+.++..              ...+.=++
T Consensus        20 ~l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p~-~~-----d-~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v   92 (183)
T d2k5ga1          20 SIRFERLLPGPIERVWAWLADADKRARWLAGG-EL-----P-RQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTL   92 (183)
T ss_dssp             SEEEEEEESSSSHHHHHHHHCHHHHTTTSCCC-CC-----C-SSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHhChHHHhhhcCCC-Cc-----c-ccCCCEEEEEecCCCCcccccccccccCCCceeEEEEE
Confidence            34566889999999999999888877775321 11     1 2344443444432111              01345578


Q ss_pred             ceecCCCCEEEEEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046151          126 DILDDDRQVTGFSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVAE  205 (209)
Q Consensus       126 d~lDd~~~~~sY~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~E  205 (209)
                      ..+++. +.+.|+...++... .-..++.+.+.  ++  +|.+.=.-.. .+   ..+.... ...--..-|++|++.+|
T Consensus        93 ~~~~p~-~rl~~tw~~~~~~~-~s~v~~~l~~~--g~--gT~ltl~~~~-~~---~~~~~~~-~~~GW~~~L~~L~~~le  161 (183)
T d2k5ga1          93 LRCEPP-RVLALTWGGGAGEA-PSEVLFELSEA--GE--QVRLVLTHTR-LA---DRAAMLD-VAGGWHAHLAVLAGKLA  161 (183)
T ss_dssp             EEEETT-TEEEEECCCCSSSS-CCEEEEEEEEC--SS--SEEEEEEEEC-CC---SHHHHHH-HTTTTTTHHHHHHHHHH
T ss_pred             EEEeCC-eEEEEEeccCCCCC-cEEEEEEEEEc--CC--cEEEEEEEec-CC---ChhhHHH-HhhhHHHHHHHHHHHHC
Confidence            888864 45778865443211 11223344543  32  2433221111 11   1222222 22334556999999998


Q ss_pred             hcC
Q 046151          206 SQV  208 (209)
Q Consensus       206 ~~~  208 (209)
                      +..
T Consensus       162 g~~  164 (183)
T d2k5ga1         162 GQA  164 (183)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            743

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.002  Score=47.75  Aligned_cols=125  Identities=9%  Similarity=0.168  Sum_probs=65.0

Q ss_pred             ceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCC-EEE
Q 046151           58 QCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQ-VTG  136 (209)
Q Consensus        58 ~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~-~~s  136 (209)
                      +|.=++.++|+||+++||.++-+-..++.|...-...+.      .+|..  +.+.+|    .+.=++..+++.++ .++
T Consensus         3 T~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~~~~~~d~------~~Gg~--f~~~~g----~~~G~~~ev~p~~rlv~t   70 (132)
T d1x53a1           3 TCKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLEA------DRGGK--FHMVDG----NVSGEFTDLVPEKHIVMK   70 (132)
T ss_dssp             EEEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBCCC------STTCC--CBBTTT----TEECCEEEEETTTEEEEE
T ss_pred             ceEEEEEEEECCCHHHHHHHHcCHHHHHhhhCCcccccc------ccCCE--EEEEec----ceeEEEEEEeCCCEEEEE
Confidence            577788899999999999999987777788633222222      33322  223333    23445666776664 234


Q ss_pred             EEEeecccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046151          137 FSIIGGEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLVSVA  204 (209)
Q Consensus       137 Y~iieG~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk~~~  204 (209)
                      +++-+  .+...+ +++++.-.+.++  +|.+.-.... .|++    +....-.++=+.=|++||+.+
T Consensus        71 w~~~~--~~~~~~-s~vt~~l~~~~~--~T~l~l~~~g-~p~~----~~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          71 WRFKS--WPEGHF-ATITLTFIDKNG--ETELCMEGRG-IPAP----EEERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             EEETT--SCTTCC-EEEEEECCBCSS--CEEEEEEEEE-EEHH----HHHHHHHTTHHHHHHHHHHHT
T ss_pred             EecCC--CCCCCc-EEEEEEEEECCC--cEEEEEEEEC-CCcc----hHHHHHhhHHHHHHHHHHHHc
Confidence            44433  332223 445444333232  3544222221 2322    222233343334477787765

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.057  Score=41.51  Aligned_cols=142  Identities=10%  Similarity=-0.026  Sum_probs=82.7

Q ss_pred             eEEEecChHHHHH-HhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecC-CCc---ceeeEeeceecCCCCEEEEE
Q 046151           64 AQRIRAPNDVVWS-IVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISG-LPA---ATSTERLDILDDDRQVTGFS  138 (209)
Q Consensus        64 ~~~I~APa~~VW~-vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G-~p~---~~~~ErLd~lDd~~~~~sY~  138 (209)
                      ..+|++|+++|.. ++.|...-+.|.+.+.++++++-.+...-.+..+..... .|.   ..+.-|-...+++...+.+.
T Consensus        57 ~~~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~~~~~~~~  136 (214)
T d1em2a_          57 KTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGI  136 (214)
T ss_dssp             EEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEEEEEcCCcEEEEEE
Confidence            3578999999986 677888888999999999988643112222333332222 223   23334444445555444444


Q ss_pred             Eee--------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhc
Q 046151          139 IIG--------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEED-TRLFADTVVKLNLQKLVSVAESQ  207 (209)
Q Consensus       139 iie--------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~-a~~~i~~v~k~gL~~Lk~~~E~~  207 (209)
                      -+.        |-.++..+.+...+.|.+++. ..|.+.+....| |-|.--.- ...++....-.-|++|++.+.++
T Consensus       137 s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~-~~t~vt~~~~~D-p~G~iP~~lvn~~~~~~~~~~~~~Lrk~~~k~  212 (214)
T d1em2a_         137 ATSHSAKPPTHKYVRGENGPGGMIVLKSASNP-RVCTFVWILNTD-LKGRLPRYLIHQSLAATMFEFAFHLRQRISEL  212 (214)
T ss_dssp             ECCCTTSCCCTTSEECEECSEEEEEEECSSCT-TCEEEEEEECEE-CCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eeccccccCCCCeEEEEEEeeeEEEEECCCCC-CeEEEEEEEEeC-CCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            332        222445555666777765432 247777777776 56653222 23445555555688888877765

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.28  Score=37.02  Aligned_cols=121  Identities=9%  Similarity=-0.075  Sum_probs=67.8

Q ss_pred             CCceeeEEeEEEecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceE-EEEEeecCCCc-c---eeeEeeceecC
Q 046151           56 QNQCSSLLAQRIRAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGST-RDVNVISGLPA-A---TSTERLDILDD  130 (209)
Q Consensus        56 ~~~~~~~v~~~I~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsv-R~lt~~~G~p~-~---~~~ErLd~lDd  130 (209)
                      +..+.-.. .+|+||+++|++++.|...-+.|.|.+.++++++..+ .-..+ ..+......|. +   .+.-|-..-++
T Consensus        42 ~~~~~r~~-~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~-~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~  119 (199)
T d1jssa_          42 NGYLYKAQ-GVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFE-ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYE  119 (199)
T ss_dssp             SSEEEEEE-EEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECS-TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEET
T ss_pred             CcEEEEEE-EEeCCCHHHHHHHHhChhhhhhcccchheEEEEEEcC-CCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcC
Confidence            44454444 5789999999999999999999999999999886531 11233 33322112222 1   11112222233


Q ss_pred             CCCEEEEEEee------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCC
Q 046151          131 DRQVTGFSIIG------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGN  180 (209)
Q Consensus       131 ~~~~~sY~iie------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~  180 (209)
                      +...+......      |-.+...+.+...+.|.++ +..+|.+.+-+..| |-|.
T Consensus       120 ~~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~-~~~~t~vt~~~~~D-p~G~  173 (199)
T d1jssa_         120 EGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKD-SPSQSLLTGYIQTD-LRGM  173 (199)
T ss_dssp             TEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETT-EEEEEEEEEEECEE-CCSC
T ss_pred             CcEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCC-CCCcEEEEEEEEcC-CCCC
Confidence            33222222222      2224555566667788653 32357777767666 4454

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.99  E-value=0.16  Score=38.85  Aligned_cols=121  Identities=12%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             HHHHHH-hhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcceeeEeeceecCCCCEEEEEEee-cccCccce
Q 046151           72 DVVWSI-VRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAATSTERLDILDDDRQVTGFSIIG-GEHRLRNY  149 (209)
Q Consensus        72 ~~VW~v-VrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~~~~ErLd~lDd~~~~~sY~iie-G~~p~~~Y  149 (209)
                      +++|.- +.+--+|+.+-|.|.+|++.+..  +-+-.|.++|..    ..++|+....-+.  .+.|.+-. |+......
T Consensus        23 ~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~--~~~~~Rel~fg~----~~v~e~Vtl~~~~--~v~f~~~a~~~~~g~~l   94 (151)
T d2ffsa1          23 LQLWEGLVCRAREPQYFVVGLERFEILVDD--GDRLHRRLYLPG----LVVEDEVVLKAPD--SAHYSIKPSAEVAGGSL   94 (151)
T ss_dssp             HHHHHHHHHHHHCGGGTCTTCCEEEEEEEC--SSEEEEEEEETT----EEEEEEEEEETTT--EEEEEECCCSSSBEEEE
T ss_pred             HHHHHHHHHhhcCHhhcccccceEEEEEec--CCeEEEEEEECC----ceeEEEEEEcCCc--EEEEEcccccCCCCcEE
Confidence            599998 55677789999999999998653  447889999953    3788988865443  45787653 44433333


Q ss_pred             EEEEEEEeecCCCCceEEEEE-EeeecCCCCC-CHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 046151          150 RSVTSVHGFNRDGAICTVVLE-SYVVDVPEGN-TEEDTRLFADT-VVKLNLQKLVSVAES  206 (209)
Q Consensus       150 ~sti~V~~~~~~g~~~T~v~~-s~~~d~P~g~-~~e~a~~~i~~-v~k~gL~~Lk~~~E~  206 (209)
                        ++++. .+++|   .+++. .|....|... ...+...++.. +..+-++.++.+-|.
T Consensus        95 --~~~Ie-ep~~g---~L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~IRe~  148 (151)
T d2ffsa1          95 --DMTIE-EPEPG---SLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDR  148 (151)
T ss_dssp             --EEEEE-EEETT---EEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --EEEEc-cCCCC---eEEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence              23333 23333   23322 2222233221 11222334444 455667788777765

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=1.8  Score=32.19  Aligned_cols=142  Identities=12%  Similarity=0.114  Sum_probs=77.5

Q ss_pred             CCceeeEEeEEE-ecChHHHHHHhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---ee-eEeeceecC
Q 046151           56 QNQCSSLLAQRI-RAPNDVVWSIVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TS-TERLDILDD  130 (209)
Q Consensus        56 ~~~~~~~v~~~I-~APa~~VW~vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~-~ErLd~lDd  130 (209)
                      +..+.-.. .+| ++|+++++.++.|.+.-+.|-+.+.++......  .. .+-.+.+....|+.   .+ .-+...+++
T Consensus        43 ~~~~~k~~-~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~~~--~~-~i~y~~~~~p~p~~~RD~v~~~~~~~~~~  118 (203)
T d1ln1a_          43 GLYEYKVF-GVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECN--GE-TVVYWEVKYPFPMSNRDYVYLRQRRDLDM  118 (203)
T ss_dssp             TEEEEEEE-EEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEET--TE-EEEEEEECCCTTSCCEEEEEEEEEEEECS
T ss_pred             CcEEEEEE-EEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEccC--Cc-EEEEEEcccccccCCceEEEEEEEEEccC
Confidence            33444443 467 599999999999988888999999887654322  11 33334444334442   11 122233344


Q ss_pred             CCCEEEEEEe---e--------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHH-HHHHHHHHHHHHHH
Q 046151          131 DRQVTGFSII---G--------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEED-TRLFADTVVKLNLQ  198 (209)
Q Consensus       131 ~~~~~sY~ii---e--------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~-a~~~i~~v~k~gL~  198 (209)
                      +...+.+-+.   .        |-.++..+.+...+.|.+.+   +|.+......| |-|.--.- ...+.......-|.
T Consensus       119 ~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~---~t~v~~~~~~D-p~G~iP~~lvn~~~~~~~~~~~~  194 (203)
T d1ln1a_         119 EGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKK---GSKVFMYYFDN-PGGQIPSWLINWAAKNGVPNFLK  194 (203)
T ss_dssp             TTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSS---SEEEEEEEEEC-CSSCCCHHHHHHHHHTHHHHHHH
T ss_pred             CCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCC---cEEEEEEEEcC-CCCcCHHHHHHHHHHHHHHHHHH
Confidence            4332322221   1        22356667777777875433   47777777776 44543222 23344444445566


Q ss_pred             HHHHHHh
Q 046151          199 KLVSVAE  205 (209)
Q Consensus       199 ~Lk~~~E  205 (209)
                      +|++.+.
T Consensus       195 ~l~k~~~  201 (203)
T d1ln1a_         195 DMARACQ  201 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666553

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.21  E-value=5.7  Score=29.44  Aligned_cols=143  Identities=11%  Similarity=0.014  Sum_probs=77.7

Q ss_pred             CCCceeeEEeEEEecChHHHHH-HhhcCCCCCccccccceeEEccCCCCCcceEEEEEeecCCCcc---eeeEeeceecC
Q 046151           55 SQNQCSSLLAQRIRAPNDVVWS-IVRRFDQPQTYKHFIKSCSVSDNFTMAVGSTRDVNVISGLPAA---TSTERLDILDD  130 (209)
Q Consensus        55 ~~~~~~~~v~~~I~APa~~VW~-vVrdF~~~~~w~p~V~s~e~~eGd~g~vGsvR~lt~~~G~p~~---~~~ErLd~lDd  130 (209)
                      ++.+|.-.. .+|+|++++|.. ++.+   .+.|.+.+..+++++-.+... .|-...+..-.|..   .+.-+-...|.
T Consensus        41 s~~~~~k~~-~~i~a~~~~vl~~~l~~---r~~Wd~~~~~~~~le~~~~~~-~i~y~~~~~p~pvs~RD~v~~~~~~~~~  115 (197)
T d2psoa1          41 NPLKLWKAS-VEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQT-EIYQYVLNSMAPHPSRDFVVLRTWKTDL  115 (197)
T ss_dssp             CCCCEEEEE-EEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTE-EEEEEEECCSSSCCCEEEEEEEEEESCC
T ss_pred             CCeEEEEEE-EEEcCCHHHHHHHHHHh---HHHHhhhhheEEEEEEcCCCC-EEEEEEccCCCcccceeEEEEEEEEEeC
Confidence            455666554 478999999875 4543   568999999999886421111 12222333222332   12222223333


Q ss_pred             CC--CEEEEEEee-------cccCccceEEEEEEEeecCCCCceEEEEEEeeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046151          131 DR--QVTGFSIIG-------GEHRLRNYRSVTSVHGFNRDGAICTVVLESYVVDVPEGNTEEDTRLFADTVVKLNLQKLV  201 (209)
Q Consensus       131 ~~--~~~sY~iie-------G~~p~~~Y~sti~V~~~~~~g~~~T~v~~s~~~d~P~g~~~e~a~~~i~~v~k~gL~~Lk  201 (209)
                      ++  ..+...-++       +..+...+.+...+.|.+++   .|.+..-...| |-|.--.-....+.......+.+|+
T Consensus       116 ~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~---~t~vt~~~~~D-p~G~iP~W~~n~~~~~~~~~~~~lr  191 (197)
T d2psoa1         116 PKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSG---KSRLTHICRID-LKGHSPEWYSKGFGHLCAAEVARIR  191 (197)
T ss_dssp             GGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTT---CEEEEEEEEEC-CSSSCTTTTTTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCC---cEEEEEEEEEC-CCCcCchhHHhhhHHHHHHHHHHHH
Confidence            33  344443333       22346666666777876432   37777777776 4454322233334556667777777


Q ss_pred             HHHhh
Q 046151          202 SVAES  206 (209)
Q Consensus       202 ~~~E~  206 (209)
                      +..++
T Consensus       192 ~~f~~  196 (197)
T d2psoa1         192 NSFQP  196 (197)
T ss_dssp             HTTSC
T ss_pred             HhhhC
Confidence            76654