Citrus Sinensis ID: 046157
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RWU5 | 665 | F-box/LRR-repeat protein | no | no | 0.890 | 0.772 | 0.250 | 1e-24 | |
| A6H779 | 423 | F-box/LRR-repeat protein | yes | no | 0.542 | 0.739 | 0.254 | 6e-22 | |
| Q9UKC9 | 423 | F-box/LRR-repeat protein | yes | no | 0.552 | 0.754 | 0.252 | 6e-21 | |
| Q5R3Z8 | 423 | F-box/LRR-repeat protein | yes | no | 0.545 | 0.744 | 0.260 | 1e-20 | |
| Q9C5D2 | 610 | F-box/LRR-repeat protein | no | no | 0.852 | 0.806 | 0.218 | 1e-20 | |
| Q8BH16 | 423 | F-box/LRR-repeat protein | yes | no | 0.552 | 0.754 | 0.252 | 2e-20 | |
| Q96IG2 | 436 | F-box/LRR-repeat protein | no | no | 0.422 | 0.559 | 0.281 | 2e-19 | |
| Q58DG6 | 436 | F-box/LRR-repeat protein | no | no | 0.422 | 0.559 | 0.281 | 2e-19 | |
| Q9CZV8 | 436 | F-box/LRR-repeat protein | no | no | 0.422 | 0.559 | 0.277 | 6e-19 | |
| C8V4D4 | 585 | SCF E3 ubiquitin ligase c | yes | no | 0.584 | 0.576 | 0.227 | 1e-18 |
| >sp|Q8RWU5|FBL3_ARATH F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1 | Back alignment and function desciption |
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Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 142/567 (25%), Positives = 252/567 (44%), Gaps = 53/567 (9%)
Query: 4 NPLDLPPECWELIFNSLN----DQSHFESLSLVSHRFLSITNYLRNSLKLTDP-STPFLP 58
P DL E EL+F L+ + S +S SL F + + R SLK P + +LP
Sbjct: 11 KPFDLLSE--ELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLK---PLRSDYLP 65
Query: 59 QLFNRFQNLKKIDLSEFQGDPNSILYLIS-RSGLDLESLNISNLKSFPFMGLKELGTKMK 117
++ R++N +DL+ + L ++ SG L SL++S SF GL L K
Sbjct: 66 RILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGPTLRSLDLSRSGSFSAAGLLRLALKCV 125
Query: 118 NLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISY----PENDSSFLPQGFQNIQSFSFY 173
NL E++ S RD+D VAE LE L + + + G + + + S
Sbjct: 126 NLVEIDLSNATEMRDADAAVVAEA-RSLERLKLGRCKMLTDMGIGCIAVGCKKLNTVSLK 184
Query: 174 ----ITDSGIEALSMKLKRLKRINLS------------------------GNFFITDKSL 205
+ D G+ L++K K ++ ++LS G F + D SL
Sbjct: 185 WCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDDDSL 244
Query: 206 MFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVSISVNGI-GIPTIDSCFKESFAY 264
L + L+++ C +T G++ + + L + ++ + ++D F S
Sbjct: 245 KSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLD--FASSLKK 302
Query: 265 ARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNL 324
L I L ++ + L+ +G C LK++ LS C + T G+S L+ K + L L++
Sbjct: 303 VSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDI 362
Query: 325 EAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLD 384
L S+ ++ L + + C+ ++ F+ I ++C LL E+ + T N D
Sbjct: 363 TCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDL-TDNEIDD 421
Query: 385 DFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKS 444
+ + + SL L N++D+ L + + C NL +DL +GIT+ GI I +
Sbjct: 422 EGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQG 481
Query: 445 CCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSA----LNDHALKMIANTCSRILHLD 500
C ++ + I C+ + D + + L K +LQ S + L IA C R+ +D
Sbjct: 482 CIHLETINISYCQDITDKSL-VSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVD 540
Query: 501 LDNCLNVTTSGVKEVVEHCRTLREINL 527
L C ++ +G+ + + L++IN+
Sbjct: 541 LKKCPSINDAGLLALAHFSQNLKQINV 567
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Arabidopsis thaliana (taxid: 3702) |
| >sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 | Back alignment and function description |
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| >sp|C8V4D4|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | ||||||
| 255572789 | 578 | F-box/LRR-repeat protein, putative [Rici | 1.0 | 0.998 | 0.589 | 0.0 | |
| 224075637 | 577 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.585 | 0.0 | |
| 225443116 | 575 | PREDICTED: EIN3-binding F-box protein 1- | 0.977 | 0.980 | 0.498 | 1e-141 | |
| 297839871 | 577 | leucine-rich repeat family protein [Arab | 0.948 | 0.948 | 0.489 | 1e-141 | |
| 18412879 | 578 | leucine-rich repeats-containing protein | 0.948 | 0.946 | 0.490 | 1e-141 | |
| 449491197 | 587 | PREDICTED: F-box/LRR-repeat protein 4-li | 0.982 | 0.965 | 0.466 | 1e-128 | |
| 356522300 | 577 | PREDICTED: F-box protein At-B-like [Glyc | 0.965 | 0.965 | 0.453 | 1e-127 | |
| 147866221 | 552 | hypothetical protein VITISV_001566 [Viti | 0.925 | 0.967 | 0.481 | 1e-126 | |
| 356529000 | 559 | PREDICTED: F-box/LRR-repeat protein 2-li | 0.920 | 0.949 | 0.454 | 1e-105 | |
| 357467773 | 575 | F-box/LRR-repeat protein [Medicago trunc | 0.956 | 0.96 | 0.398 | 1e-101 |
| >gi|255572789|ref|XP_002527327.1| F-box/LRR-repeat protein, putative [Ricinus communis] gi|223533327|gb|EEF35079.1| F-box/LRR-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/578 (58%), Positives = 439/578 (75%), Gaps = 1/578 (0%)
Query: 1 MTENPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQL 60
MTE +DLP ECWELI NSL+ HFESLSLVS RF S+TN+LR +L ++ + PFL L
Sbjct: 1 MTEKSIDLPQECWELILNSLDHHRHFESLSLVSTRFFSMTNHLRQNLTISSHTLPFLSHL 60
Query: 61 FNRFQNLKKIDLSEF-QGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNL 119
NRF NLK I +S+ + D NS+L+ +S+S LDL+SLN N FP +GL+E G KM+NL
Sbjct: 61 LNRFPNLKSIQISQLSKDDLNSLLHQLSKSELDLDSLNFENQTRFPHLGLREFGLKMRNL 120
Query: 120 KELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQSFSFYITDSGI 179
++L+CSK +DSDL + + LE LDIS+P DS F P G ++Q FS +TD GI
Sbjct: 121 RKLHCSKISGLQDSDLFLIGSSFPLLEDLDISFPLYDSRFNPNGSLDLQCFSGIVTDDGI 180
Query: 180 EALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSP 239
L +KL +L+RI+LSGN FITDKSL FLS N +LL E+ +RDCDFITQ+GIS MRN
Sbjct: 181 LELGLKLNKLRRIDLSGNRFITDKSLHFLSLNCLLLSEVKVRDCDFITQNGISLIMRNCS 240
Query: 240 NLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLS 299
NL SIS++G+GIP+IDS F+ESF YA+ LCE+ LSNSFISDELL L+ EACLPLKKL +S
Sbjct: 241 NLNSISLDGVGIPSIDSFFQESFTYAKSLCELHLSNSFISDELLYLVAEACLPLKKLTVS 300
Query: 300 HCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNS 359
HCYNF+ GISFLL +Y+ L +L+LE ANFL DESMI+LS FL +L++I+L C+KLT+
Sbjct: 301 HCYNFSFVGISFLLYRYKFLVYLDLEGANFLTDESMIELSNFLCNLSYINLSLCSKLTSL 360
Query: 360 TFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILC 419
TFF +++ CPLLS++KME TNLG+++F L+ NP++KSL L N NLSD+ L K+A C
Sbjct: 361 TFFALIKNCPLLSDVKMERTNLGVEEFMVDLITNPRIKSLKLVGNNNLSDDCLIKIACCC 420
Query: 420 PNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGS 479
P+L+V+++S+C GITEEGI E+L+SC EI+ LE+ RC + +L I++ELPKLEVLQ G
Sbjct: 421 PSLQVLEISYCFGITEEGIKEVLRSCSEIRHLEMNRCVGIKNLDINVELPKLEVLQVQGP 480
Query: 480 ALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVA 539
++D AL +IA C +LHLDL CLNVT GV EVV++C LRE+NL+WCD V VD++A
Sbjct: 481 GIDDEALAVIAKRCQMLLHLDLAGCLNVTEKGVNEVVQNCTKLREMNLKWCDNVKVDMIA 540
Query: 540 WMVFSRPSLRKIIPPCGFAPTESQKNFFLRHGCLVCKG 577
MVFSRPSLRKI PPCGF PT+ Q +FFL+HGCLVCKG
Sbjct: 541 TMVFSRPSLRKITPPCGFIPTDKQISFFLQHGCLVCKG 578
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075637|ref|XP_002304715.1| predicted protein [Populus trichocarpa] gi|222842147|gb|EEE79694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225443116|ref|XP_002273285.1| PREDICTED: EIN3-binding F-box protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297839871|ref|XP_002887817.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297333658|gb|EFH64076.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18412879|ref|NP_565242.1| leucine-rich repeats-containing protein [Arabidopsis thaliana] gi|6730724|gb|AAF27114.1|AC018849_2 hypothetical protein; 8015-9751 [Arabidopsis thaliana] gi|21592320|gb|AAM64271.1| unknown [Arabidopsis thaliana] gi|110739194|dbj|BAF01513.1| hypothetical protein [Arabidopsis thaliana] gi|195546962|gb|ACG49251.1| At1g80630 [Arabidopsis thaliana] gi|332198308|gb|AEE36429.1| leucine-rich repeats-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449491197|ref|XP_004158826.1| PREDICTED: F-box/LRR-repeat protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356522300|ref|XP_003529785.1| PREDICTED: F-box protein At-B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|147866221|emb|CAN81984.1| hypothetical protein VITISV_001566 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356529000|ref|XP_003533085.1| PREDICTED: F-box/LRR-repeat protein 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357467773|ref|XP_003604171.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355505226|gb|AES86368.1| F-box/LRR-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | ||||||
| TAIR|locus:2198903 | 578 | AT1G80630 [Arabidopsis thalian | 0.771 | 0.769 | 0.5 | 3.9e-115 | |
| TAIR|locus:2149805 | 665 | AT5G01720 "AT5G01720" [Arabido | 0.923 | 0.801 | 0.262 | 9.3e-30 | |
| UNIPROTKB|F1NHD2 | 423 | FBXL2 "Uncharacterized protein | 0.519 | 0.709 | 0.282 | 3e-23 | |
| UNIPROTKB|F1PWK1 | 422 | FBXL2 "Uncharacterized protein | 0.514 | 0.703 | 0.285 | 3.9e-23 | |
| UNIPROTKB|A6H779 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.516 | 0.704 | 0.276 | 4e-23 | |
| TAIR|locus:2143320 | 642 | AT5G27920 "AT5G27920" [Arabido | 0.890 | 0.800 | 0.241 | 4e-23 | |
| UNIPROTKB|Q9UKC9 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.514 | 0.702 | 0.285 | 1.7e-22 | |
| UNIPROTKB|Q5R3Z8 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.514 | 0.702 | 0.285 | 1.7e-22 | |
| RGD|1562243 | 422 | Fbxl2 "F-box and leucine-rich | 0.514 | 0.703 | 0.278 | 6.9e-22 | |
| MGI|MGI:1919429 | 423 | Fbxl2 "F-box and leucine-rich | 0.514 | 0.702 | 0.278 | 7.1e-22 |
| TAIR|locus:2198903 AT1G80630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 231/462 (50%), Positives = 314/462 (67%)
Query: 115 KMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQGFQNIQSFSFYI 174
+MKN+KEL C F DSDL+++ LE LDISYP + S +
Sbjct: 105 EMKNVKELKCYGVGGFSDSDLVSIGVNFPLLEKLDISYPNSSPS--------------RV 150
Query: 175 TDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFA 234
+DSG+ LS LK L +IN+SGN FITDKSL+ LS N +LLREI+ RDCDFI+ I F
Sbjct: 151 SDSGVIELSSNLKGLLKINISGNSFITDKSLIALSQNCLLLREIIFRDCDFISSDCIKFV 210
Query: 235 MRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLK 294
+RNS NL S+++NGIG+ +S ++F +AR L E+DLS+SF+SD+LL L+ A LPLK
Sbjct: 211 LRNSRNLESLAINGIGLRPRESLLTDAFLFARCLTELDLSDSFLSDDLLCLIASAKLPLK 270
Query: 295 KLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDLGFCA 354
KL+LS C+ FT GI +LL KYQSL HLNL+ ANFL DE ++ L F L F++L FC+
Sbjct: 271 KLLLSDCHGFTFDGILYLLDKYQSLVHLNLKGANFLSDEMVMKLGMFFRRLTFLNLSFCS 330
Query: 355 KLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLV-INPQVKSLHLARNGNLSDESLK 413
KLT FF+I+ C L + M TN G++++T VK L+L+RN NL DE L+
Sbjct: 331 KLTGLAFFSIIERCVSLRCMIMVGTNFGVEEYTKDTKDFKSGVKFLYLSRNHNLLDECLE 390
Query: 414 KLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGI-DLELPKLE 472
K++ CP +E +D++ C GIT +GI E+ ++C +++ L+I RC + LG+ D ELPKLE
Sbjct: 391 KISRHCPFIESLDVAQCPGITRDGILEVWRNCGKLRSLDISRCTGIKSLGVVDFELPKLE 450
Query: 473 VLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDE 532
L+A G+ ++D AL MI+ C +LHLDL CLNV++ GVKEVV+ C LREINL++C E
Sbjct: 451 SLRACGTWIDDEALDMISKKCRGLLHLDLQGCLNVSSRGVKEVVQSCIRLREINLKYC-E 509
Query: 533 VNVDIVAWMVFSRPSLRKIIPPCGFAPTESQKNFFLRHGCLV 574
+ + WMVF+ PSLRKI+PPCGF+PT++ KNFFLRHGC+V
Sbjct: 510 ADKKMYTWMVFANPSLRKIVPPCGFSPTKALKNFFLRHGCVV 551
|
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| TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
| RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00031484 | hypothetical protein (577 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 577 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 2e-10 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 1e-09 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 4e-09 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 2e-07 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 23/179 (12%)
Query: 365 LRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEV 424
L CP+ + +N ++K L L + + DE L LA CPNL+V
Sbjct: 35 LYMCPISDPPLDQLSNCN------------KLKKLILPGSKLIDDEGLIALAQSCPNLQV 82
Query: 425 IDLSHCLGITEEGIGEILKSCCEIKCLEIKR---CRAVFDLGIDLEL----PKLEVLQAS 477
+DL C IT+ GI + +C +++ + + R + D+ + L L+ + +
Sbjct: 83 LDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSL-SALGKNCTFLQTVGFA 141
Query: 478 GSALNDHALKMIANTCSRIL-HLDLDNCLNVTTSGVKEVVE--HCRTLREINLRWCDEV 533
G + D + +A+ CS+ L L L+NC N+T + ++ + L + R C +
Sbjct: 142 GCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLI 200
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 100.0 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.93 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.91 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.91 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.89 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.74 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.73 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.7 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.7 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.65 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.64 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.6 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.57 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.56 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.51 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.45 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.45 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.37 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.3 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.25 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.2 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.16 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.96 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.93 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.92 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.81 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.79 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.65 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.63 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.48 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.47 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.46 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.44 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.44 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.37 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.36 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.35 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.33 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.32 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.19 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.09 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.05 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.76 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.44 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.36 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.2 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.09 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.09 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.96 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.84 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 96.83 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.82 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.81 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.52 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.32 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.29 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.28 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.04 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.04 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 95.91 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.9 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 95.88 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.71 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.67 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 95.56 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 95.4 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.28 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.23 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 94.97 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 94.1 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 94.0 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 93.16 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 92.47 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 92.01 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.6 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 90.56 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 89.81 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 88.41 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 85.69 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 85.4 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 84.38 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 81.97 |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=263.19 Aligned_cols=385 Identities=22% Similarity=0.341 Sum_probs=243.3
Q ss_pred CCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhccccccccccCCCCCchHHHHhhcccCceecccCccCCch-hHHH
Q 046157 6 LDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQLFNRFQNLKKIDLSEFQGDPN-SILY 84 (577)
Q Consensus 6 ~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~l~ 84 (577)
-.||+|++..||++| +.+.+.+++.+|+-|+..+. .-.+++++++..+..+++ +.+.
T Consensus 73 ~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~Al---------------------D~~~~q~idL~t~~rDv~g~VV~ 130 (483)
T KOG4341|consen 73 RSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLAL---------------------DGSCWQHIDLFTFQRDVDGGVVE 130 (483)
T ss_pred ccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhh---------------------ccccceeeehhcchhcCCCccee
Confidence 469999999999999 89999999999999987661 112335555555443333 2222
Q ss_pred HHhhc-CCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEeeccCCCCCCCCCCcC
Q 046157 85 LISRS-GLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDSSFLPQG 163 (577)
Q Consensus 85 ~~~~~-~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 163 (577)
.+.+. +..+++|.++||..+.+..+..+...||++++|.+.+|..+++..+..+.+.|++|++|++..|.
T Consensus 131 ~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--------- 201 (483)
T KOG4341|consen 131 NMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--------- 201 (483)
T ss_pred hHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc---------
Confidence 23222 34566666666666666656555555566655555555555555555555555555555555544
Q ss_pred cccccccccccCHHHHHHHHHcCccCcEEeccCCcccChhHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCccE
Q 046157 164 FQNIQSFSFYITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIRDCDFITQSGISFAMRNSPNLVS 243 (577)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 243 (577)
.+++..+..++++|++|+++++++|+.++..++..+.+++..++.+...+|.....
T Consensus 202 ---------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--------------- 257 (483)
T KOG4341|consen 202 ---------SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--------------- 257 (483)
T ss_pred ---------hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH---------------
Confidence 34444444455555555555555544444444444443333333333333322222
Q ss_pred EEecCCCCCCcchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHhcCCCcCeee
Q 046157 244 ISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLN 323 (577)
Q Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 323 (577)
+ .+..+...++-+.+++
T Consensus 258 -------------------------------------e--------------------------~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 258 -------------------------------------E--------------------------ALLKAAAYCLEILKLN 274 (483)
T ss_pred -------------------------------------H--------------------------HHHHHhccChHhhccc
Confidence 2 2222222333333444
Q ss_pred cccccccChHHHHHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCcccccccCCCCccEEEcCC
Q 046157 324 LEAANFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTPLVINPQVKSLHLAR 403 (577)
Q Consensus 324 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 403 (577)
+..|..++++++..+...+..|+.|..++|..+++..+..+..++++ |+.+.+.+
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~-------------------------L~~l~l~~ 329 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN-------------------------LQVLELSG 329 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc-------------------------eEEEeccc
Confidence 44444455666666666666667777766666666666666655544 34444445
Q ss_pred CCCCCHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEcccccccccccccccCCCceEEEccCCCCCH
Q 046157 404 NGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKSCCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALND 483 (577)
Q Consensus 404 ~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~i~~ 483 (577)
|..+++.++..++..++.|+.+++..|..+++..+..+..+|+.|+++.++.|.. ++|
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~----------------------itD 387 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL----------------------ITD 387 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh----------------------hhh
Confidence 5667777777777778888888888887777766777777888888888887774 445
Q ss_pred HHHHHHHH---hCCCccEEecCCCCCCChhhHHHHHhhCCCCcEEEecCCCCCcHHHHHHHHHhCCCCceeccCCC
Q 046157 484 HALKMIAN---TCSRILHLDLDNCLNVTTSGVKEVVEHCRTLREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPCG 556 (577)
Q Consensus 484 ~~~~~l~~---~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~~ 556 (577)
+++..+.. ....|+.+.+++|+.+++..+..+ ..|++|+.+++.+|..++.+.+..+..++|+++....-..
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence 54443332 456899999999998888877765 7899999999999999999999999999999988765543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 577 | ||||
| 2p1m_B | 594 | Tir1-ask1 Complex Structure Length = 594 | 3e-06 | ||
| 3ogk_B | 592 | Structure Of Coi1-Ask1 In Complex With Coronatine A | 2e-05 |
| >pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 | Back alignment and structure |
|
| >pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 3e-66
Identities = 103/564 (18%), Positives = 209/564 (37%), Gaps = 56/564 (9%)
Query: 6 LDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQLFNRFQ 65
L P E E +F+ + S+SLV + I + R + + + + RF
Sbjct: 7 LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFP 66
Query: 66 NLKKIDLS-------------EFQGDPNSILYLISRSGLDLESLNISNLKSFPFMGLKEL 112
++ ++L + G + +S S LE + + + L+ +
Sbjct: 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELI 125
Query: 113 GTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLDISYPENDS------SFLPQGFQN 166
KN K L S F L A+A TC L+ LD+ + D S P + +
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185
Query: 167 IQSFSFY-----ITDSGIEALSMKLKRLKRINLSGNFFITDKSLMFLSSNLVLLREILIR 221
+ S + ++ S +E L + LK + L+ + + L L L E+
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTG 243
Query: 222 DCDFITQ----SGISFAMRNSPNLVSISVNGIGIPTIDSCFKESFAYARGLCEIDLSNSF 277
+ SG+S A+ L +S + + ++ L ++LS +
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA---VPAYLPAVYSVCSRLTTLNLSYAT 300
Query: 278 ISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAANFLE------ 331
+ L L C L++L + AG+ L S + L L + +
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358
Query: 332 --DESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDDFTTP 389
++ ++ +S L + L FC ++TN+ TI R P ++ ++ D+ T
Sbjct: 359 LTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417
Query: 390 LVINPQVKSL--------HLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEI 441
++ ++ L+ +G L+D+ + + +E++ ++ G ++ G+ +
Sbjct: 418 EPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHV 476
Query: 442 LKSCCEIKCLEIKRCRAVFDLGIDL--ELPKLEVLQASGSALNDHALKMIANTCSRILHL 499
L C ++ LEI+ C + +L + L S +++ A K++ ++
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536
Query: 500 DLDNCLNVTTSGVKEVVEHCRTLR 523
+D + VE R
Sbjct: 537 VIDERGAPDSRPESCPVERVFIYR 560
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.94 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.9 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.9 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.89 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.88 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.88 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.88 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.88 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.88 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.88 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.88 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.87 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.86 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.86 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.85 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.84 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.84 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.84 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.82 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.81 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.8 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.79 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.79 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.79 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.79 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.78 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.78 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.78 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.78 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.77 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.77 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.76 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.76 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.75 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.74 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.73 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.71 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.71 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.7 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.66 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.65 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.64 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.64 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.63 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.62 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.6 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.58 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.55 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.55 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.55 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.51 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.51 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.5 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.49 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.49 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.48 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.47 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.46 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.46 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.45 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.42 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.42 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.42 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.41 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.41 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.41 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.4 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.38 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.36 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.36 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.36 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.36 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.35 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.32 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.32 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.31 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.3 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.24 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.21 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.2 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.17 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.15 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.15 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.14 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.11 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.09 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.08 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.07 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.05 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.05 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.04 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.04 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.02 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.0 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.99 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.98 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.98 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.95 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.91 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.88 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.86 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.82 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.82 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.78 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.75 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 98.74 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.71 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.67 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.65 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.63 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.63 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.58 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.57 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.56 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.56 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.53 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.51 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.5 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.49 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.48 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.48 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.47 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.46 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.45 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.43 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.37 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.36 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.09 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.07 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.01 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.94 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.93 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.92 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.91 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.88 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.81 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.75 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.74 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 97.7 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.5 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.33 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.26 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.24 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.17 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.09 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.04 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.01 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 96.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.93 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.89 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 96.59 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 96.5 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.03 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 95.95 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 95.04 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=379.96 Aligned_cols=496 Identities=18% Similarity=0.231 Sum_probs=359.5
Q ss_pred CCCCCCChHHHHHHHHhcCCccchhhhHHhhHHHHhhhccccccccccCCCCCchHHHHhhcccCceecccCcc------
Q 046157 3 ENPLDLPPECWELIFNSLNDQSHFESLSLVSHRFLSITNYLRNSLKLTDPSTPFLPQLFNRFQNLKKIDLSEFQ------ 76 (577)
Q Consensus 3 ~~~~~LP~evl~~I~~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~------ 76 (577)
+...+||+|||.+||+||+..+|+.++++|||+|+++....+..+.+...........+.+|+++++++++++.
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 83 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN 83 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGT
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcc
Confidence 66788999999999999954999999999999999997666666665543333446788899999999998753
Q ss_pred -------CCchhHHHHHhhcCCCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHHHhhcCCCcEee
Q 046157 77 -------GDPNSILYLISRSGLDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAVAETCEFLEVLD 149 (577)
Q Consensus 77 -------~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 149 (577)
....+++..+...+++|++|+++++. +++..+..+...+++|++|++.+|..++...+..+...+++|++|+
T Consensus 84 l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 162 (594)
T 2p1m_B 84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162 (594)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEE
T ss_pred cccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEe
Confidence 12234566777778899999999875 7777777777778999999999887777777888888899999999
Q ss_pred ccCCCCCCCCCCcCcccccccccccCHH---HHHHHHHcCccCcEEeccCCc-ccChhHHHHHHhcCCCCcEEEeccCCC
Q 046157 150 ISYPENDSSFLPQGFQNIQSFSFYITDS---GIEALSMKLKRLKRINLSGNF-FITDKSLMFLSSNLVLLREILIRDCDF 225 (577)
Q Consensus 150 l~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~ 225 (577)
+++|. +++. .+..+...+++|++|+++++. .+++..+..+...+++|++|++.+|..
T Consensus 163 L~~~~-------------------i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 163 LRESD-------------------VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp CTTCE-------------------EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CcCCc-------------------cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 99887 3322 233334467789999998764 566777777777789999999988743
Q ss_pred CCHHHHHHHHhcCCCccEEEecCCCCCC---cchhHHHHhhhhcCCCEE-EcCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 046157 226 ITQSGISFAMRNSPNLVSISVNGIGIPT---IDSCFKESFAYARGLCEI-DLSNSFISDELLRLLGEACLPLKKLVLSHC 301 (577)
Q Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 301 (577)
..++...+..+++|++|.+..+.... ........+.++++|+.+ .+.. .....+..+...+++|++|++++|
T Consensus 224 --~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~--~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 224 --LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD--AVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp --HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT--CCGGGGGGGHHHHTTCCEEECTTC
T ss_pred --HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc--cchhhHHHHHHhhCCCCEEEccCC
Confidence 33466777888899999877654211 112334456677888877 3332 223333444445778888888877
Q ss_pred CCCCHHHHHHHHhcCCCcCeeecccccccChHHHHHHHhcCCCCCEEee--------cCCCCCChHHHHHHHhhCCCCCe
Q 046157 302 YNFTLAGISFLLSKYQSLEHLNLEAANFLEDESMIDLSKFLTSLNFIDL--------GFCAKLTNSTFFTILRECPLLSE 373 (577)
Q Consensus 302 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l--------~~~~~~~~~~l~~l~~~~~~L~~ 373 (577)
. +.+.++..+...+++|++|++.++ +++..+..+...+++|+.|++ ..+..+++.++..+...|++|+.
T Consensus 300 ~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 300 T-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp C-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred C-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 6 666666666677788888888776 456666666666788888887 34456777777777666777777
Q ss_pred EEeeeccCCCCcccccccCCCCccEEEcCCCCCCCHHHHHHHHhhCCCccEEecC-----CCCCCC----HHHHHHHHhh
Q 046157 374 IKMETTNLGLDDFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLS-----HCLGIT----EEGIGEILKS 444 (577)
Q Consensus 374 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~ 444 (577)
|.+..+ .+++..+..++..+++|+.|+++ +|..++ +.++..++..
T Consensus 377 L~~~~~--------------------------~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 377 VLYFCR--------------------------QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp EEEEES--------------------------CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred HHHhcC--------------------------CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 655443 35566666666667777777777 455666 5666666777
Q ss_pred CCCCcEEEcccccccccccc---cccCCCceEEEccCCCCCHHHHHHHHHhCCCccEEecCCCCCCChhhHHHHHhhCCC
Q 046157 445 CCEIKCLEIKRCRAVFDLGI---DLELPKLEVLQASGSALNDHALKMIANTCSRILHLDLDNCLNVTTSGVKEVVEHCRT 521 (577)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~l~~~~~~~~~ 521 (577)
+++|+.|++++ .+++.++ ...+++|+.|++++|.+++.++..+...+++|+.|++++|+ +++.++..+...+++
T Consensus 431 ~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 431 CKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLET 507 (594)
T ss_dssp CTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGG
T ss_pred CCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCC
Confidence 77777777755 3444332 22467788888888889999998887889999999999997 588888888888999
Q ss_pred CcEEEecCCCCCcHHHHHHHHHhCCCCceeccCC
Q 046157 522 LREINLRWCDEVNVDIVAWMVFSRPSLRKIIPPC 555 (577)
Q Consensus 522 L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~~~~ 555 (577)
|+.|++++|+. +++++..+...+|.|+...+..
T Consensus 508 L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 508 MRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp SSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred CCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 99999999976 8888888889999998776654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 577 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 9/231 (3%)
Query: 268 LCEIDLSNSFISDELLRLLGEACLPLKKLVLSHCYNFTLAGISFLLSKYQSLEHLNLEAA 327
+ +DLSNS I L + C L+ L L + ++ L+K +L LNL
Sbjct: 48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVN-TLAKNSNLVRLNLSGC 105
Query: 328 NFLEDESMIDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKME---TTNLGLD 384
+ + ++ L + L+ ++L +C T + NL
Sbjct: 106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 165
Query: 385 DFTTPLVINPQVKSLHLARNGNLSDESLKKLAILCPNLEVIDLSHCLGITEEGIGEILKS 444
D +T + P + L L+ + L ++ ++ L+ + LS C I E + E L
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLE-LGE 223
Query: 445 CCEIKCLEIKRCRAVFDLGIDLELPKLEVLQASGSALNDHALKMIANTCSR 495
+K L++ V D + L L LQ + S A I N ++
Sbjct: 224 IPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQ 272
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.88 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.88 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.88 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.87 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.64 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.64 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.55 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.19 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.09 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.08 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.08 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.08 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.03 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.02 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.0 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.92 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.87 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.86 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.85 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.83 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.81 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.71 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.71 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.68 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.68 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.6 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.57 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.56 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.55 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.51 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.51 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.49 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.49 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.45 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.4 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.19 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.09 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.07 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.03 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.86 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.58 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.48 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.4 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.79 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.4e-19 Score=177.40 Aligned_cols=410 Identities=20% Similarity=0.226 Sum_probs=255.9
Q ss_pred CCccEEeccCCCCcChhhHHHHHHcCCCCCeeecCCCccccchhHHHH---HhhcCCCcEeeccCCCCCCCCCCcCcccc
Q 046157 91 LDLESLNISNLKSFPFMGLKELGTKMKNLKELNCSKNFSFRDSDLIAV---AETCEFLEVLDISYPENDSSFLPQGFQNI 167 (577)
Q Consensus 91 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (577)
.+|+.|+++ +..+++.++..+...++++++|+|.+| ++++.++..+ ...+++|++|++++|.
T Consensus 2 ~~l~~ld~~-~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~------------- 66 (460)
T d1z7xw1 2 LDIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE------------- 66 (460)
T ss_dssp EEEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-------------
T ss_pred CCCCEEEee-CCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc-------------
Confidence 357888886 556888888888888999999999988 5776665544 4678999999999988
Q ss_pred cccccccCHHHHHHHHHcC----ccCcEEeccCCcccChhHHHHHH---hcCCCCcEEEeccCCCCCHHHHHHHHhcC--
Q 046157 168 QSFSFYITDSGIEALSMKL----KRLKRINLSGNFFITDKSLMFLS---SNLVLLREILIRDCDFITQSGISFAMRNS-- 238 (577)
Q Consensus 168 ~~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-- 238 (577)
+++.++..+...+ .+|++|++++| .+++.+...+. ..+++|++|++.++. +.+.++..+....
T Consensus 67 ------i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~ 138 (460)
T d1z7xw1 67 ------LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLD 138 (460)
T ss_dssp ------CHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTS
T ss_pred ------CChHHHHHHHHHHhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc-chhhhhhhhhhcccc
Confidence 8888888877654 46999999986 57776655443 467899999998864 5555444443322
Q ss_pred --CCccEEEecCCCCCC-cchhHHHHhhhhcCCCEEEcCCCCCChHHHHHHH----hcCCCCcEEEecCCCCCCHH--HH
Q 046157 239 --PNLVSISVNGIGIPT-IDSCFKESFAYARGLCEIDLSNSFISDELLRLLG----EACLPLKKLVLSHCYNFTLA--GI 309 (577)
Q Consensus 239 --~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~----~~~~~L~~L~l~~~~~~~~~--~l 309 (577)
............... ........+.....++.+.++.+...+....... ........+.+..+...... ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (460)
T d1z7xw1 139 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 218 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred cccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence 233344444333211 1223344556677888888888776665544332 22345667777665443321 22
Q ss_pred HHHHhcCCCcCeeecccccccChHHH----HHHHhcCCCCCEEeecCCCCCChHHHHHHHhhCCCCCeEEeeeccCCCCc
Q 046157 310 SFLLSKYQSLEHLNLEAANFLEDESM----IDLSKFLTSLNFIDLGFCAKLTNSTFFTILRECPLLSEIKMETTNLGLDD 385 (577)
Q Consensus 310 ~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 385 (577)
.......+.++.+.+.++.. .+... .......+.++.++++++. +..........
T Consensus 219 ~~~l~~~~~~~~l~~~~n~~-~~~~~~~~~~~~~~~~~~l~~l~l~~n~-i~~~~~~~~~~------------------- 277 (460)
T d1z7xw1 219 CGIVASKASLRELALGSNKL-GDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCR------------------- 277 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH-------------------
T ss_pred cccccccccccccchhhccc-cccccchhhccccccccccccccccccc-ccccccccccc-------------------
Confidence 33345567777777777652 23222 2222334567777777654 33333222211
Q ss_pred ccccccCCCCccEEEcCCCCCCCHHHHHHHHh----hCCCccEEecCCCCCCCHHHHH---HHHhhCCCCcEEEcccccc
Q 046157 386 FTTPLVINPQVKSLHLARNGNLSDESLKKLAI----LCPNLEVIDLSHCLGITEEGIG---EILKSCCEIKCLEIKRCRA 458 (577)
Q Consensus 386 ~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 458 (577)
.+...+.++.++++++. +++.++..+.. ..+.|+.++++++ .+++.++. .+...+++|++|++++|.
T Consensus 278 ---~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~- 351 (460)
T d1z7xw1 278 ---VLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR- 351 (460)
T ss_dssp ---HHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-
T ss_pred ---ccccccccccccccccc-ccccccchhhcccccccccccccccccc-chhhhhhhhcccccccccchhhhheeeec-
Confidence 11223445555555544 55555554432 2356777777776 45554433 334566777777777775
Q ss_pred cccccc-------cccCCCceEEEccCCCCCHHHHHHHH---HhCCCccEEecCCCCCCChhhHHHHHhhC----CCCcE
Q 046157 459 VFDLGI-------DLELPKLEVLQASGSALNDHALKMIA---NTCSRILHLDLDNCLNVTTSGVKEVVEHC----RTLRE 524 (577)
Q Consensus 459 l~~~~~-------~~~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~c~~l~~~~l~~~~~~~----~~L~~ 524 (577)
+++.++ ....+.|++|++++|.+++.++.+++ ..+++|++|+++++ .+++.++..+...+ ..|+.
T Consensus 352 i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~ 430 (460)
T d1z7xw1 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQ 430 (460)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCE
T ss_pred ccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCE
Confidence 544331 12356688888888888887766654 35688999999886 58888888776544 36899
Q ss_pred EEecCCCCCc--HHHHHHHHHhCCCCcee
Q 046157 525 INLRWCDEVN--VDIVAWMVFSRPSLRKI 551 (577)
Q Consensus 525 L~l~~c~~~~--~~~~~~~~~~~~~L~~l 551 (577)
|++.++..-. ...+..+.+..|+|+.|
T Consensus 431 l~l~~~~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp EECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 9998874332 23455667788888765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|