Citrus Sinensis ID: 046181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
MAILWHFAIVVSIAIVFIPTSTLPMNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQKQCDHLWAIHPPLLSEGPKPYAIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKRQNMKVIVVNNHFGPNRNQRLPGYTQYAIGGSMNPSIKSQANLLIAPKVGNKKEQTFQVADAKSARSLTSESSV
ccHHHHHHHHHHHHHEEccccccccccccccccccccHHHHHHHHHHccccccccEEEcccccEEEEEEEccccccccccccEEEEEEEEEEEEEEEEEEEEccccccccccccEEEEEccccEEEEEEEEcccccccEEEEEccccEEEEccEEcccccccccEEEEEEcEEcccccccccccccEEEccccccEEEEEccEEEccccccccEEEEEEccccccccEEEEEcc
ccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccccccEEcccEEEEEEEEccEEEEccccEcccccccEEEEEccccEEEEcccHHccccccEEEEEcccEEEEEcccccccccccccEEEEEEcccccccHcccccEEEEEEcccccccEEccccEEEccccccccEEEEEcccccccccccEEccc
MAILWHFAIVVSIAIVFiptstlpmnvtdqcwrknpnwhmhqcqvatcsmsfsgkitdnvgkdivhykvtdpgddtinpklgtlrygatlipqkqcdhlwaihppllsegpkpyaIRLVTTSKVWIDHNIRYEcqdglidvrrgstdvtisnnwfrnqekrQNMKVIVVNnhfgpnrnqrlpgytqyaiggsmnpsikSQANlliapkvgnkkeqtFQVAdaksarsltsessv
MAILWHFAIVVSIAIVFIPTSTLPMNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKvtdpgddtinpkLGTLRYGATLIPQKQCDHLWAIHPPLLSEGPKPYAIRLVTTSKVWIDHNIRYECqdglidvrrgstdvtisnnwfrnqekrqnMKVIVVNNhfgpnrnqrLPGYTQYAIGGSMNPSIKSQANLLIAPKVGNKKEQtfqvadaksarsltsessv
MAILWHfaivvsiaivfiPTSTLPMNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQKQCDHLWAIHPPLLSEGPKPYAIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKRQNMKVIVVNNHFGPNRNQRLPGYTQYAIGGSMNPSIKSQANLLIAPKVGNKKEQTFQVADAKSARSLTSESSV
**ILWHFAIVVSIAIVFIPTSTLPMNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQKQCDHLWAIHPPLLSEGPKPYAIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKRQNMKVIVVNNHFGPNRNQRLPGYTQYAIGG*******************************************
MAILWHFAIVVSIAIVFIPTSTLPMNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQKQCDHLWAIHPPLLSEGPKPYAIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKRQNMKVIVVNNHFGPNRNQRLPGYTQYAIGGSMNPSIKSQANLLIAPKVGNKKEQTFQVADAKSARSLTSES**
MAILWHFAIVVSIAIVFIPTSTLPMNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQKQCDHLWAIHPPLLSEGPKPYAIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKRQNMKVIVVNNHFGPNRNQRLPGYTQYAIGGSMNPSIKSQANLLIAPKVGNKKE********************
*AILWHFAIVVSIAIVFIPTSTLPMNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQKQCDHLWAIHPPLLSEGPKPYAIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKRQNMKVIVVNNHFGPNRNQRLPGYTQYAIGGSMNPSIKSQANLLIAPKVGNKKEQTFQVADAKSARSLTSE***
iHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAILWHFAIVVSIAIVFIPTSTLPMNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQKQCDHLWAIHPPLLSEGPKPYAIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKRQNMKVIVVNNHFGPNRNQRLPGYTQYAIGGSMNPSIKSQANLLIAPKVGNKKEQTFQVADAKSARSLTSESSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query234 2.2.26 [Sep-21-2011]
Q9M8Z8416 Probable pectate lyase 8 no no 0.807 0.454 0.285 8e-19
Q9SCG9346 Major pollen allergen Cup N/A no 0.452 0.306 0.421 1e-17
P81294367 Major pollen allergen Jun N/A no 0.452 0.288 0.406 2e-17
Q9LLT1367 Major pollen allergen Jun N/A no 0.452 0.288 0.406 3e-17
Q96385375 Major pollen allergen Cha N/A no 0.452 0.282 0.406 1e-16
P18632374 Sugi basic protein OS=Cry N/A no 0.452 0.283 0.398 3e-16
Q9LRM5452 Probable pectate lyase 9 no no 0.435 0.225 0.410 3e-16
O65456394 Probable pectate lyase 16 no no 0.461 0.274 0.392 5e-16
Q93Z25432 Probable pectate lyase 22 no no 0.470 0.254 0.369 7e-16
O65388384 Putative pectate lyase 2 no no 0.448 0.273 0.378 9e-16
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function desciption
 Score = 94.0 bits (232), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 108/280 (38%), Gaps = 91/280 (32%)

Query: 26  NVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDT-INPKLGTL 84
           N  D CWR +  W + + ++A CS+ F        G+D   Y VTDPGDD  +NP  GTL
Sbjct: 68  NPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIG--GRDGRFYVVTDPGDDDPVNPIPGTL 125

Query: 85  RY-------------------------------------------GATLIPQKQCD---- 97
           R+                                           GA L  Q   +    
Sbjct: 126 RHAVIQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVH 185

Query: 98  --HLWAIHP---PLLSEGPKPYAIR---------LVTTSKVWIDHNIRYECQDGLIDVRR 143
             H+    P    ++   P  Y  R         +  +S +WIDHN    C DGL+D   
Sbjct: 186 GIHVHDCKPTGNAMVRSSPSHYGFRSMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVM 245

Query: 144 GSTDVTISNNWFRNQE------------KRQNMKVIVVNNHFGPNRNQRLP----GY--- 184
            ST +T+SNN+F +              + + M+V +  NHFG    QR+P    GY   
Sbjct: 246 SSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHV 305

Query: 185 --------TQYAIGGSMNPSIKSQANLLIAPKVGNKKEQT 216
                     YAIGGS  P+I SQ N  +AP     KE T
Sbjct: 306 VNNDYTHWEMYAIGGSAGPTINSQGNRFLAPVNPFAKEVT 345

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9SCG9|MPAC1_CUPAR Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1 Back     alignment and function description
>sp|P81294|MPAJ1_JUNAS Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1 Back     alignment and function description
>sp|Q9LLT1|MPAJ1_JUNVI Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1 Back     alignment and function description
>sp|Q96385|MPAC1_CHAOB Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P18632|SBP_CRYJA Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description
>sp|O65456|PLY16_ARATH Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|O65388|PLY2_ARATH Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
356546071 370 PREDICTED: probable pectate lyase 8-like 0.957 0.605 0.411 3e-55
356540726320 PREDICTED: probable pectate lyase 8-like 0.807 0.590 0.442 7e-52
449439601 350 PREDICTED: putative pectate lyase 2-like 0.850 0.568 0.413 1e-49
297811015298 pectate lyase family protein [Arabidopsi 0.675 0.530 0.408 6e-38
356495431289 PREDICTED: LOW QUALITY PROTEIN: probable 0.854 0.692 0.380 1e-37
15242373297 pectate lyase [Arabidopsis thaliana] gi| 0.675 0.531 0.404 3e-37
357518457 392 Major pollen allergen-like protein [Medi 0.995 0.594 0.333 3e-37
357518441 392 Major pollen allergen-like protein [Medi 0.991 0.591 0.324 6e-35
357499737285 Major pollen allergen Jun v [Medicago tr 0.670 0.550 0.406 1e-34
357457961 373 Major pollen allergen-like protein [Medi 0.897 0.563 0.344 1e-34
>gi|356546071|ref|XP_003541455.1| PREDICTED: probable pectate lyase 8-like [Glycine max] Back     alignment and taxonomy information
 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/321 (41%), Positives = 169/321 (52%), Gaps = 97/321 (30%)

Query: 3   ILWHFAIVVSIAIVFIPTSTLP-------MNVTDQCWRKNPNWHMHQCQVATCSMSFSGK 55
           ILW F +V+ +  ++ P  +         +NV DQCWR NP W  H+ Q+ATCS+ ++GK
Sbjct: 9   ILWCFVLVIIVVALYTPNISAAKQSKINGLNVIDQCWRLNPKWRRHRPQLATCSVGYTGK 68

Query: 56  ITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQK-----QCDHLWAIHPPLLSE- 109
           +T+N+GKD++HYKV DP DD INPK GTLRYGA++I  K     Q D    +  PLL   
Sbjct: 69  MTNNIGKDLIHYKVIDPNDDPINPKPGTLRYGASVIQGKVWITFQRDMHIKLERPLLISS 128

Query: 110 ----------------------------------------------GPKPYAIRL----- 118
                                                         GP+   I L     
Sbjct: 129 FTTIDGRGVNVNIADNACLMIFKATNVIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDG 188

Query: 119 -----VTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEK------------R 161
                VT SK+WIDHN  Y CQDGL+DV RGSTDVT+SNNWFRNQ+K             
Sbjct: 189 DAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRD 248

Query: 162 QNMKVIVVNNHFGPNRNQRLP---------------GYTQYAIGGSMNPSIKSQANLLIA 206
           QNMKV +V NHFGPN NQR+P               G+ QYAIGGSM PS+KS+ANL IA
Sbjct: 249 QNMKVTIVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIA 308

Query: 207 PKVGNKKEQTFQVADAKSARS 227
           P +G+ KE T++ +  K+  +
Sbjct: 309 PTIGS-KEVTWRKSTQKNGNT 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540726|ref|XP_003538836.1| PREDICTED: probable pectate lyase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|449439601|ref|XP_004137574.1| PREDICTED: putative pectate lyase 2-like [Cucumis sativus] gi|449529517|ref|XP_004171746.1| PREDICTED: putative pectate lyase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297811015|ref|XP_002873391.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319228|gb|EFH49650.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356495431|ref|XP_003516581.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|15242373|ref|NP_196490.1| pectate lyase [Arabidopsis thaliana] gi|9955515|emb|CAC05454.1| major pollen allergen-like protein [Arabidopsis thaliana] gi|332003986|gb|AED91369.1| pectate lyase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357518457|ref|XP_003629517.1| Major pollen allergen-like protein [Medicago truncatula] gi|355523539|gb|AET03993.1| Major pollen allergen-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357518441|ref|XP_003629509.1| Major pollen allergen-like protein [Medicago truncatula] gi|355523531|gb|AET03985.1| Major pollen allergen-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357499737|ref|XP_003620157.1| Major pollen allergen Jun v [Medicago truncatula] gi|355495172|gb|AES76375.1| Major pollen allergen Jun v [Medicago truncatula] Back     alignment and taxonomy information
>gi|357457961|ref|XP_003599261.1| Major pollen allergen-like protein [Medicago truncatula] gi|355488309|gb|AES69512.1| Major pollen allergen-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
TAIR|locus:2184797297 AT5G09280 [Arabidopsis thalian 0.316 0.249 0.577 2.7e-34
TAIR|locus:2008925384 AT1G11920 [Arabidopsis thalian 0.316 0.192 0.422 2.8e-19
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.290 0.150 0.425 7.7e-18
TAIR|locus:2093131 440 AT3G24670 [Arabidopsis thalian 0.252 0.134 0.419 3.3e-17
TAIR|locus:2120643394 AT4G22090 [Arabidopsis thalian 0.316 0.187 0.433 4.5e-17
TAIR|locus:2086656 412 AT3G27400 [Arabidopsis thalian 0.299 0.169 0.423 6e-17
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.260 0.141 0.424 9.2e-17
TAIR|locus:2197808 431 AT1G04680 [Arabidopsis thalian 0.252 0.136 0.435 1e-16
TAIR|locus:2120633394 RHS14 "root hair specific 14" 0.316 0.187 0.411 2e-16
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.290 0.144 0.375 2.6e-16
TAIR|locus:2184797 AT5G09280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 247 (92.0 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 52/90 (57%), Positives = 61/90 (67%)

Query:   115 AIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEK------------RQ 162
             AIRLVT  KVWIDHN  Y+C+DGL+DV  GSTDVT+SNNWFRNQ+K             +
Sbjct:   122 AIRLVTAKKVWIDHNTLYDCEDGLLDVTLGSTDVTVSNNWFRNQDKVMLLGHDDGYVKDK 181

Query:   163 NMKVIVVNNHFGPNRNQRLP----GYTQYA 188
             +M+V VV NHFGPN NQR+P    GY   A
Sbjct:   182 DMRVTVVFNHFGPNCNQRMPRVRHGYAHVA 211
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2008925 AT1G11920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120643 AT4G22090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120633 RHS14 "root hair specific 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
smart00656190 smart00656, Amb_all, Amb_all domain 1e-18
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 1e-15
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 2e-04
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 48/130 (36%), Positives = 60/130 (46%), Gaps = 37/130 (28%)

Query: 115 AIRLVTTSKVWIDHNIRYECQ---------DGLIDVRRGSTDVTISNNWFRNQEK----- 160
           AI +  +S VWIDH     C          DGLID++ GST VTISNN+F N  K     
Sbjct: 62  AISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLG 121

Query: 161 -------RQNMKVIVVNNHFGPNRNQRLP---------------GYTQYAIGGSMNPSIK 198
                     M+V + +N+FG N  QR P               G+T YAIGG M  +I 
Sbjct: 122 HSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATIL 180

Query: 199 SQANLLIAPK 208
           S+ N   AP 
Sbjct: 181 SEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 99.97
smart00656190 Amb_all Amb_all domain. 99.97
PLN02218431 polygalacturonase ADPG 97.14
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.83
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.81
PLN02793443 Probable polygalacturonase 96.71
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.7
PLN02155394 polygalacturonase 96.68
PLN03003 456 Probable polygalacturonase At3g15720 96.43
PLN02218431 polygalacturonase ADPG 96.28
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.24
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 95.98
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 95.76
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 95.69
smart00656190 Amb_all Amb_all domain. 95.55
PLN02793 443 Probable polygalacturonase 95.38
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.07
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 94.61
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.54
PLN03010409 polygalacturonase 94.53
PLN02188404 polygalacturonase/glycoside hydrolase family prote 94.52
PLN03003 456 Probable polygalacturonase At3g15720 94.49
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 94.02
PLN02155394 polygalacturonase 93.81
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 93.56
PLN03010 409 polygalacturonase 93.43
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 93.42
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 89.94
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 87.92
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 85.43
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 85.36
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 85.24
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 82.96
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-38  Score=284.03  Aligned_cols=177  Identities=23%  Similarity=0.308  Sum_probs=142.7

Q ss_pred             CCCCCCCCcEEEEEECCCCCC---CCCCCCc--eEEEeEEecCCcc----------------ee--------EEEEEc--
Q 046181           55 KITDNVGKDIVHYKVTDPGDD---TINPKLG--TLRYGATLIPQKQ----------------CD--------HLWAIH--  103 (234)
Q Consensus        55 ~tTGG~GG~v~~~~VTtl~D~---~~~~~pg--tlr~~~~i~~~~~----------------~i--------~gi~I~--  103 (234)
                      +||||.||++  ++|.|.+|+   +.+.+|.  +|.+.|+|....|                ++        .|+.|+  
T Consensus        47 GTtGG~~g~~--v~v~ta~~l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g~gl~i~~a  124 (345)
T COG3866          47 GTTGGSGGDI--VTVRTANDLETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVGGGLKIRDA  124 (345)
T ss_pred             CcccCCCCcE--EEEeeHHHHHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEeceEEEEeC
Confidence            9999999999  999999999   6667777  8889998854411                11        355555  


Q ss_pred             CCcccc-----C---CC--CCeEEe-eCCCcEEEEceeecc--------CCCCeeEeeeCCccEEEeCceecCCccc---
Q 046181          104 PPLLSE-----G---PK--PYAIRL-VTTSKVWIDHNIRYE--------CQDGLIDVRRGSTDVTISNNWFRNQEKR---  161 (234)
Q Consensus       104 ~~g~i~-----~---~~--~DaI~i-~~s~nVWIDHcsfs~--------~~Dglldi~~~s~~VTIS~n~f~~h~k~---  161 (234)
                      +|+++|     .   .+  .|+|+| .+++|||||||+|+.        ..||++|+++++++||||||+|++|+|.   
T Consensus       125 ~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~  204 (345)
T COG3866         125 GNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLL  204 (345)
T ss_pred             CcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeee
Confidence            444443     1   22  499999 579999999999999        6899999999999999999999999998   


Q ss_pred             ----------CceeEEEEceEECCCCCCCCC-----------CCC----ceeeecCCC--CeEEEEceeEeCCCCCCC--
Q 046181          162 ----------QNMKVIVVNNHFGPNRNQRLP-----------GYT----QYAIGGSMN--PSIKSQANLLIAPKVGNK--  212 (234)
Q Consensus       162 ----------~~~~vT~hhN~fa~~~~~R~P-----------~~~----~y~ig~~~~--a~vlvE~NyF~~~~~p~~--  212 (234)
                                ++.+||+||||| .|+.||+|           ||.    .|+++.++|  |++++|+|||++...|..  
T Consensus       205 G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~  283 (345)
T COG3866         205 GSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFL  283 (345)
T ss_pred             ccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEEeeccceEEEEecceeccCCCCceee
Confidence                      667899999999 89999999           221    256667777  999999999999544322  


Q ss_pred             -----------------------------------cccccccccccchhhh-cccCCC
Q 046181          213 -----------------------------------KEQTFQVADAKSARSL-TSESSV  234 (234)
Q Consensus       213 -----------------------------------~~~~~~~~p~~~v~~~-~~~~g~  234 (234)
                                                         .-++|+++|...||+. |++||+
T Consensus       284 dt~~~~GY~~~d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGa  341 (345)
T COG3866         284 DTKGTSGYANQDSGSYLNSSKSMSVRAGGVTWNPSSYYSYTVDPPEDVKSFVTNYAGA  341 (345)
T ss_pred             ecCCccceEEeccCceecccCCcccccCCccCCCCCCcccccCChHHhhhhhhccccc
Confidence                                               1146899999999999 999984

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 2e-18
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 66/133 (49%), Gaps = 27/133 (20%)
Query: 115 AIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEK------------RQ 162
           AI +   +  WIDHN   +C DGLIDV  GST +TISNN F N  K             +
Sbjct: 152 AITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDK 211
Query: 163 NMKVIVVNNHFGPNRNQRLPG---------------YTQYAIGGSMNPSIKSQANLLIAP 207
           +MKV V  N FGPN  QR+P                +  YAIGGS NP+I S+ N   AP
Sbjct: 212 SMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAP 271
Query: 208 KVGNKKEQTFQVA 220
               KKE T ++ 
Sbjct: 272 SESYKKEVTKRIG 284

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 3e-20
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 4e-15
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 3e-12
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 7e-12
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 2e-11
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 3e-11
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 3e-11
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 5e-11
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 8e-10
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 4e-09
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 6e-08
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score = 86.7 bits (214), Expect = 3e-20
 Identities = 54/136 (39%), Positives = 66/136 (48%), Gaps = 27/136 (19%)

Query: 115 AIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEK------------RQ 162
           AI +   +  WIDHN   +C DGLIDV  GST +TISNN F N  K             +
Sbjct: 152 AITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDK 211

Query: 163 NMKVIVVNNHFGPNRNQRLP---------------GYTQYAIGGSMNPSIKSQANLLIAP 207
           +MKV V  N FGPN  QR+P                +  YAIGGS NP+I S+ N   AP
Sbjct: 212 SMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAP 271

Query: 208 KVGNKKEQTFQVADAK 223
               KKE T ++    
Sbjct: 272 SESYKKEVTKRIGCES 287
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.75
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.43
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.41
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.26
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.9
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.84
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 96.84
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.67
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.59
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.5
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.41
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.21
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.14
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.1
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 96.05
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 96.05
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.03
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 95.99
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 95.89
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.86
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 95.84
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 95.76
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 95.69
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.68
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 95.67
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 95.67
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 95.56
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 95.49
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 95.33
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.26
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.24
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 95.06
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 93.85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 93.24
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 92.92
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 92.77
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 88.15
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 87.87
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 83.76
2inu_A410 Insulin fructotransferase; right-handed parallel b 83.12
2inu_A410 Insulin fructotransferase; right-handed parallel b 81.64
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=2.8e-59  Score=431.98  Aligned_cols=207  Identities=38%  Similarity=0.651  Sum_probs=172.2

Q ss_pred             CChhhhhhccCCCccccccccccccccccCCCCCCCCCcEEEEEECCCCCCCCCCC------------CceEEEeE--Ee
Q 046181           25 MNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPK------------LGTLRYGA--TL   90 (234)
Q Consensus        25 ~n~~d~c~~~~~~w~~~~~~lA~~a~Gfg~~tTGG~GG~v~~~~VTtl~D~~~~~~------------pgtlr~~~--~i   90 (234)
                      +||||+||||+|+|+.+||+||+||||||++||||+||++  |+||+++|++.+|+            |++|++.+  +|
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v--~~VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I   78 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDF--YTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNI   78 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEE--EEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEE
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccE--EEECChHHcccccCcchhHHHhccCCCeEEEEcCCcEE
Confidence            6999999999999999999999999999999999999999  99999999754444            45554443  32


Q ss_pred             cCCc-----------------------cee-----EEEEEcCCccc----------------------cCCCCCeEEeeC
Q 046181           91 IPQK-----------------------QCD-----HLWAIHPPLLS----------------------EGPKPYAIRLVT  120 (234)
Q Consensus        91 ~~~~-----------------------~~i-----~gi~I~~~g~i----------------------~~~~~DaI~i~~  120 (234)
                      ...+                       .||     +||+|| ++.+                      ...++|||+|++
T Consensus        79 ~l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIr-nl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~  157 (346)
T 1pxz_A           79 KLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILH-SLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRN  157 (346)
T ss_dssp             CCSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEE-SCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEES
T ss_pred             ecCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEE-eeEEEeeccCCCceEEeccCcccccccCCCCCEEEEec
Confidence            1100                       122     556665 1111                      136799999999


Q ss_pred             CCcEEEEceeeccCCCCeeEeeeCCccEEEeCceecCCccc------------CceeEEEEceEECCCCCCCCC------
Q 046181          121 TSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKR------------QNMKVIVVNNHFGPNRNQRLP------  182 (234)
Q Consensus       121 s~nVWIDHcsfs~~~Dglldi~~~s~~VTIS~n~f~~h~k~------------~~~~vT~hhN~fa~~~~~R~P------  182 (234)
                      ++|||||||+|+|+.||++|+++++++||||||+|++|+|+            +.++||||||||++++.+|+|      
T Consensus       158 s~nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~  237 (346)
T 1pxz_A          158 VTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGL  237 (346)
T ss_dssp             CEEEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSE
T ss_pred             CceEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecce
Confidence            99999999999999999999999999999999999999988            246999999999559999999      


Q ss_pred             ---------CCCceeeecCCCCeEEEEceeEeCCCCCCC-----------------------------------------
Q 046181          183 ---------GYTQYAIGGSMNPSIKSQANLLIAPKVGNK-----------------------------------------  212 (234)
Q Consensus       183 ---------~~~~y~ig~~~~a~vlvE~NyF~~~~~p~~-----------------------------------------  212 (234)
                               +|..|++++++++++++|+|||++++.|..                                         
T Consensus       238 ~hv~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~  317 (346)
T 1pxz_A          238 VHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEE  317 (346)
T ss_dssp             EEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCC
T ss_pred             EEEEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCcc
Confidence                     577899999999999999999999876421                                         


Q ss_pred             -----cccccccccccchhhhcccCCC
Q 046181          213 -----KEQTFQVADAKSARSLTSESSV  234 (234)
Q Consensus       213 -----~~~~~~~~p~~~v~~~~~~~g~  234 (234)
                           +.++|+++|+++|++||++||+
T Consensus       318 ~~~y~~~~~~~~~~~~~v~~~~~~aG~  344 (346)
T 1pxz_A          318 TNIYNSNEAFKVENGNAAPQLTKNAGV  344 (346)
T ss_dssp             CCCCCTTTCCCCCCGGGHHHHTTTCSS
T ss_pred             CCCCCcccccccCCHHHHHHHhhhccC
Confidence                 2245889999999999999996
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 234
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-15
d1pxza_ 346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 4e-11
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 1e-12
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-12
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-11
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 3e-10
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 8e-08
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score = 72.4 bits (177), Expect = 1e-15
 Identities = 54/135 (40%), Positives = 66/135 (48%), Gaps = 27/135 (20%)

Query: 115 AIRLVTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEK------------RQ 162
           AI +   +  WIDHN   +C DGLIDV  GST +TISNN F N  K             +
Sbjct: 152 AITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDK 211

Query: 163 NMKVIVVNNHFGPNRNQRLP---------------GYTQYAIGGSMNPSIKSQANLLIAP 207
           +MKV V  N FGPN  QR+P                +  YAIGGS NP+I S+ N   AP
Sbjct: 212 SMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAP 271

Query: 208 KVGNKKEQTFQVADA 222
               KKE T ++   
Sbjct: 272 SESYKKEVTKRIGCE 286
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 99.97
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.42
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 96.63
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.14
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.02
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.83
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 95.82
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 95.72
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.71
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.42
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.36
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 95.25
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 95.23
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 94.71
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 94.26
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 93.77
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 93.75
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 92.76
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 92.5
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 92.27
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 91.66
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 90.77
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 90.58
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 80.72
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1.1e-61  Score=444.73  Aligned_cols=205  Identities=42%  Similarity=0.723  Sum_probs=172.3

Q ss_pred             CChhhhhhccCCCccccccccccccccccCCCCCCCCCcEEEEEECCCCCCCCCCCCceEEEeEEecCCcc---------
Q 046181           25 MNVTDQCWRKNPNWHMHQCQVATCSMSFSGKITDNVGKDIVHYKVTDPGDDTINPKLGTLRYGATLIPQKQ---------   95 (234)
Q Consensus        25 ~n~~d~c~~~~~~w~~~~~~lA~~a~Gfg~~tTGG~GG~v~~~~VTtl~D~~~~~~pgtlr~~~~i~~~~~---------   95 (234)
                      .||||+||||+|+|+++||+||+||||||++|||||||+|  |+||||+|+.++|+||+||.++  .|.+|         
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v--~~Vt~l~D~~~~~g~GsLr~a~--~~~~pr~IvF~vsg   76 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDF--YTVTSTDDNPVNPTPGTLRYGA--TREKALWIIFSQNM   76 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEE--EEECCCCCCTTSCCTTSHHHHH--HCSSCEEEEESSCE
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceE--EEecChhhccccCCCccHHHHh--hCCCCeEEEEeccE
Confidence            5999999999999999999999999999999999999999  9999999985555555555554  23222         


Q ss_pred             ------------------------------ee-----EEEEEcCCccc----------------------cCCCCCeEEe
Q 046181           96 ------------------------------CD-----HLWAIHPPLLS----------------------EGPKPYAIRL  118 (234)
Q Consensus        96 ------------------------------~i-----~gi~I~~~g~i----------------------~~~~~DaI~i  118 (234)
                                                    ++     +||+|| ++.+                      ...++|+|+|
T Consensus        77 ~I~l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIir-nl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i  155 (346)
T d1pxza_          77 NIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILH-SLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITM  155 (346)
T ss_dssp             EECCSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEE-SCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEE
T ss_pred             EEeccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEe-ceEEecCcccCCcccccccccCccccccCCCceeee
Confidence                                          01     466666 1211                      1346899999


Q ss_pred             eCCCcEEEEceeeccCCCCeeEeeeCCccEEEeCceecCCccc------------CceeEEEEceEECCCCCCCCC----
Q 046181          119 VTTSKVWIDHNIRYECQDGLIDVRRGSTDVTISNNWFRNQEKR------------QNMKVIVVNNHFGPNRNQRLP----  182 (234)
Q Consensus       119 ~~s~nVWIDHcsfs~~~Dglldi~~~s~~VTIS~n~f~~h~k~------------~~~~vT~hhN~fa~~~~~R~P----  182 (234)
                      ++++|||||||+|+|+.||++|+++++++||||||+|++|.|.            ++++||||||+|+++..+|+|    
T Consensus       156 ~~s~nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~  235 (346)
T d1pxza_         156 RNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY  235 (346)
T ss_dssp             ESCEEEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEES
T ss_pred             ecCceEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCcccc
Confidence            9999999999999999999999999999999999999999887            667899999999655566666    


Q ss_pred             -----------CCCceeeecCCCCeEEEEceeEeCCCCCCC---------------------------------------
Q 046181          183 -----------GYTQYAIGGSMNPSIKSQANLLIAPKVGNK---------------------------------------  212 (234)
Q Consensus       183 -----------~~~~y~ig~~~~a~vlvE~NyF~~~~~p~~---------------------------------------  212 (234)
                                 +|..|++++++++++++|+|||++++.|..                                       
T Consensus       236 g~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~  315 (346)
T d1pxza_         236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKT  315 (346)
T ss_dssp             SEEEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCC
T ss_pred             ceEEEECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCc
Confidence                       677899999999999999999999888742                                       


Q ss_pred             -------cccccccccccchhhhcccCCC
Q 046181          213 -------KEQTFQVADAKSARSLTSESSV  234 (234)
Q Consensus       213 -------~~~~~~~~p~~~v~~~~~~~g~  234 (234)
                             +.++|.++|+++|+++++.||+
T Consensus       316 ~~~~~~~~~~~y~~~~as~V~~v~~~AGa  344 (346)
T d1pxza_         316 EETNIYNSNEAFKVENGNAAPQLTKNAGV  344 (346)
T ss_dssp             CCCCCCCTTTCCCCCCGGGHHHHTTTCSS
T ss_pred             cccccccCccccccCCHHHHHhhhccCCC
Confidence                   2356899999999999999996
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure