Citrus Sinensis ID: 046186

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MANTCSLLNLVILFRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRRK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccEEEEEccccccEEEccEEEEEEEEEEcccccccccccccEEEEEEEEEEcccEEEcccccccccccccccccccccccccccccccEEEccccccEEEEccccEEEEEEcccccEEEEEEEEcccccccccccccEEEEcccccHHcccccEEEccccccccccccccccHHHHHHHHcccHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHccHHHHHccccccccccccccEEccccccccccccccccccccccEEEEccccccccccccccEEEEEEEEccccccccccccccEEEEEEEcEEEEEEEEccccEEEEEEEEccEEEEEccccEEEEEEccccEEEEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccEEEccccEEEEEccccHHHHHccEEEEEEEEcccccccccccccccEEEEEEcccccccEEEEEccccccHcccccccccccccccccccccEEEEEEccccEEEEcccEEEEEEccccccEEEEEEEEcccccccccccccEEEEEccccccccccccccccccccccccEEccccHHHHHHHHcccHHHHHHHHccccccccEEEEccccEEcccccccccccHHccccccccccccccccccccccHcccEEHEccccccccccccccccEEEEEccccccHHHHEcccEEEEEEccccEEcccccccccEEEEEEEccEEEEEEcccccEEEcccEcccEEEEEcccEEEEEEccccccEEEEEEEcccccccHccccHHHHHcccccc
Coil and Loop (DISEMBL)
MANTCSLLNLVILFRGCLAAnqqqwqqpndcqinnlealepnnrveceagvvetwdpgheqfqCAGVAVVRHTIRqkglllpqfsnspqLVYILQAYtyrrgshgdpfpgypetyqspqqggfgesagrsqqdSHQKIRRfrqgdifalpagvahwcynegstPVVAVVLLDvanndnqldrnprkfhlagnphqeFQQQRQQErfgghqqcnnvfcgfDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGqlqvarpprtqsqreyeedsseyersrgryggdngvEETMCTMKLrenigdpskadiytqgaghittlnsfnlpVLRWIQLSAERGLLhrnammvphwnlnAHSIMYAISGSCHVqvvdsygrsvydgevrrgqimvvpqNFAVVKRAggaefewisfktndnamisplsgrtsvmrgkgrrk
Flexible Loop (DISEMBL)
MANTCSLLNLVILFRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLllpqfsnspQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRlrsekdyrgaivtvrgqlqvarpprtqsqreyeedsseyersrgryggdngVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWIsfktndnamisplsgrtsvmrgkgrrk
Low Complexity Region (SEG)
MANTCSLLNLVILFRGCLAANqqqwqqPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPvvavvlldvanndnqldRNPRKFHLAGNPhqefqqqrqqerfgghqqCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQreyeedsseyersrgryggdNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRRK
Disordered region (IsUnstruct)
*******************************************RVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRG*************************************RFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANN*******************************GHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQL***************************************************KADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTND*********************
Disordered Region (DISOPRED)
***TCSLLNLVILFRG***********************EPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYP****************************FRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFH*****************************GFDTRILAEAFNVD***************************************************************T*KLR*****PS**DIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKG***
Disordered Region (DISEMBL)
MANTCSLLNLVILFRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQ*********************IRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP*************GGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQ*************************RYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSG************
Disordered Region (DISPRO)
*ANTCSLLNLVILFRGCLAANQQQW***NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQ*****************SHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP*******************NNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPP************************DNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISP**GR**VMRG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANTCSLLNLVILFRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	436	2.2.26 [Sep-21-2011]
P13744	480	11S globulin subunit beta	N/A	no	0.944	0.858	0.443	1e-107
P09802	509	Legumin A OS=Gossypium hi	N/A	no	0.938	0.803	0.451	1e-105
P02857	517	Legumin A OS=Pisum sativu	N/A	no	0.926	0.781	0.434	1e-102
P15838	520	Legumin A2 OS=Pisum sativ	N/A	no	0.926	0.776	0.430	1e-101
P11828	481	Glycinin G3 OS=Glycine ma	yes	no	0.931	0.844	0.447	1e-100
P04776	495	Glycinin G1 OS=Glycine ma	yes	no	0.942	0.830	0.429	7e-99
P05692	503	Legumin J OS=Pisum sativu	N/A	no	0.908	0.787	0.425	5e-98
P09800	516	Legumin B OS=Gossypium hi	N/A	no	0.901	0.761	0.459	8e-98
P07728	499	Glutelin type-A 1 OS=Oryz	yes	no	0.942	0.823	0.425	6e-97
P05190	484	Legumin type B OS=Vicia f	N/A	no	0.912	0.822	0.429	4e-96

>sp|P13744|11SB_CUCMA 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/453 (44%), Positives = 281/453 (62%), Gaps = 41/453 (9%)

Query: 2   ANTCSLLNLVILFRGCLAANQQQ----------WQQ-----PNDCQINNLEALEPNNRVE 46
           ++  + L L +   GCL+  +QQ          WQQ     P  C++ NL A +P  R E
Sbjct: 4   SSLFTFLCLAVFINGCLSQIEQQSPWEFQGSEVWQQHRYQSPRACRLENLRAQDPVRRAE 63

Query: 47  CEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGD 106
            EA   E WD  +++FQCAGV ++RHTIR KGLLLP FSN+P+L+++ Q +    G  G 
Sbjct: 64  AEAIFTEVWDQDNDEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGF----GIRGI 119

Query: 107 PFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVV 166
             PG  ETYQ+  +    +SAG + +D HQKIR FR+GD+  +PAGV+HW YN G + +V
Sbjct: 120 AIPGCAETYQTDLRRS--QSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLV 177

Query: 167 AVVLLDVANNDNQLDRNPRKFHLAGNPHQEF----QQQRQQERFGGHQQCNNVFCGFDTR 222
            +V  D  N  NQ+D   RKF+LAG P Q      + +R   +    ++  N+F GF   
Sbjct: 178 LIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRKGSSGEKSGNIFSGFADE 237

Query: 223 ILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGR 282
            L EAF +D  LVR+L+ E D R  IV V    +V  P           +  E ERSRGR
Sbjct: 238 FLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLP-----------EKDEEERSRGR 286

Query: 283 Y-----GGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAE 337
           Y       +NG+EET+CT++L++NIG   +AD++    G I+T N   LP+LR ++LSAE
Sbjct: 287 YIESESESENGLEETICTLRLKQNIGRSVRADVFNPRGGRISTANYHTLPILRQVRLSAE 346

Query: 338 RGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV 397
           RG+L+ NAM+ PH+ +N+HS+MYA  G+  VQVVD++G+SV+DGEVR GQ++++PQNF V
Sbjct: 347 RGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVV 406

Query: 398 VKRAGGAEFEWISFKTNDNAMISPLSGRTSVMR 430
           +KRA    FEWI+FKTNDNA+ + L+GR S MR
Sbjct: 407 IKRASDRGFEWIAFKTNDNAITNLLAGRVSQMR 439

This is a seed storage protein.
Cucurbita maxima (taxid: 3661)

>sp|P09802|LEGA_GOSHI Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2

 Score =  384 bits (985), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/458 (45%), Positives = 276/458 (60%), Gaps = 49/458 (10%)

Query: 16  GCLAANQQQWQQP-NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTI 74
           GCLA      QQ  N+CQIN L A  P  R+  EAG  E W+P  +Q +CAGV+V+R TI
Sbjct: 18  GCLARQTFSSQQSQNECQINRLRASAPQTRIRSEAGTTEWWNPNCQQLRCAGVSVMRQTI 77

Query: 75  RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDS 134
              GL+LP F+N+PQL+YI+Q     RG  G   PG  ET+Q  QQ    +S GR Q D 
Sbjct: 78  EPNGLVLPSFTNAPQLLYIVQG----RGIQGIVMPGCAETFQDSQQWQH-QSRGRFQ-DQ 131

Query: 135 HQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPH 194
           HQK+RRFRQGDI ALP GV HW YN+G+  VV + LLD  N+ NQLD  PR+FHLAGNP 
Sbjct: 132 HQKVRRFRQGDIIALPQGVVHWSYNDGNERVVTINLLDTGNSANQLDNIPRRFHLAGNPE 191

Query: 195 QEFQQQRQ------------------------------QERFGGHQQ----------CNN 214
           +E +Q R+                                R   HQ+          CNN
Sbjct: 192 EEQRQLRRLAQQMQGRSERGEESEEEEGEGEEEEEEDNPSRRSRHQEEEEQGRESSSCNN 251

Query: 215 VFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSS 274
           + C FD   LA+AFNVD  ++R+++  +  RG I+ VR +LQV  PPR + +   E    
Sbjct: 252 LLCAFDRNFLAQAFNVDHDIIRKIQRVRGNRGTIIRVRDRLQVVTPPRMEEEEREERQQE 311

Query: 275 E-YERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQ 333
           + Y  +RG    DNG+EET C+M+++EN+ DP +ADI+   AG I+TLN FNLP+L+ ++
Sbjct: 312 QRYRHTRG-GSQDNGLEETFCSMRIKENLADPERADIFNPQAGRISTLNRFNLPILQRLE 370

Query: 334 LSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ 393
           LSAERG+L+  A ++P WN+NAH I+Y + G   VQVV+  G +V+D  V +GQ++ VPQ
Sbjct: 371 LSAERGVLYNRAGLIPQWNVNAHKILYMLRGCARVQVVNHNGDAVFDDNVEQGQLLTVPQ 430

Query: 394 NFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRG 431
           NFA +K+AG    EWISF TN  A  +P++G  S MR 
Sbjct: 431 NFAFMKQAGNEGAEWISFFTNSEATNTPMAGSVSFMRA 468

This is a seed storage protein.

Gossypium hirsutum (taxid: 3635)

>sp|P02857|LEGA_PEA Legumin A OS=Pisum sativum GN=LEGA PE=1 SV=1

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/467 (43%), Positives = 286/467 (61%), Gaps = 63/467 (13%)

Query: 16  GCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIR 75
           GC A  +Q  Q  N+CQ+  L+ALEP+NR+E E G++ETW+P ++QF+CAGVA+ R T++
Sbjct: 18  GCFALREQPQQ--NECQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQ 75

Query: 76  QKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSH 135
           +  L  P +SN+PQ ++I Q   Y     G  FPG PET++ PQ+   GE  GR  +D H
Sbjct: 76  RNALRRPYYSNAPQEIFIQQGNGY----FGMVFPGCPETFEEPQESEQGE--GRRYRDRH 129

Query: 136 QKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQ 195
           QK+ RFR+GDI A+P G+  W YN+  TPV+AV L D+ +++NQLD+ PR+F+LAGN  Q
Sbjct: 130 QKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQ 189

Query: 196 EFQQQRQQERFGGHQQ----CNNVFCGFDTRILAEAFNVDERLVRRL--RSEKDYRGAIV 249
           EF Q + Q+  GG Q+     NN+F GF    L +AFNV+  +V RL  R+E + +GAIV
Sbjct: 190 EFLQYQHQQ--GGKQEQENEGNNIFSGFKRDYLEDAFNVNRHIVDRLQGRNEDEEKGAIV 247

Query: 250 TVRGQLQVARPPRTQSQ----------------------REYEEDSSEY----------- 276
            V+G L +  PP  Q++                         EE+  E            
Sbjct: 248 KVKGGLSIISPPEKQARHQRGSRQEEDEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRR 307

Query: 277 --------------ERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLN 322
                         ++ + R  GDNG+EET+CT KLR NIG  S  DIY   AG I T+ 
Sbjct: 308 GEEEEEDKKERGGSQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSPDIYNPEAGRIKTVT 367

Query: 323 SFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGE 382
           S +LPVLRW++LSAE G LH+NAM VPH+NLNA+SI+YA+ G   +QVV+  G +V+DGE
Sbjct: 368 SLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGE 427

Query: 383 VRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVM 429
           +  G+ + VPQN+AV  ++    F +++FKTND A I+ L+G +SV+
Sbjct: 428 LEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVI 474

This protein found in the seeds of many leguminous and non-leguminous plants is the source of sulfur-containing amino acids in seed meals.

Pisum sativum (taxid: 3888)

>sp|P15838|LEGA2_PEA Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1

 Score =  370 bits (951), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/469 (43%), Positives = 284/469 (60%), Gaps = 65/469 (13%)

Query: 16  GCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIR 75
           GC A  +Q  Q  N+CQ+  L ALEP+NR+E E G++ETW+P ++QF+CAGVA+ R T++
Sbjct: 19  GCFALREQPEQ--NECQLERLNALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQ 76

Query: 76  QKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSH 135
              L  P +SN+PQ ++I Q   Y     G  FPG PET++ PQ+   GE  GR  +D H
Sbjct: 77  HNALRRPYYSNAPQEIFIQQGNGY----FGMVFPGCPETFEEPQESEQGE--GRRYRDRH 130

Query: 136 QKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQ 195
           QK+ RFR+GDI A+P G+  W YN+  TPV+AV L D+ +++NQLD+ PR+F+LAGN  Q
Sbjct: 131 QKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQ 190

Query: 196 EFQQQRQQERFGGHQQ----CNNVFCGFDTRILAEAFNVDERLVRRL--RSEKDYRGAIV 249
           EF + + Q+  GG Q+     NN+F GF    L +AFNV+  +V RL  R+E + +GAIV
Sbjct: 191 EFLRYQHQQ--GGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIV 248

Query: 250 TVRGQLQVARPPRTQSQ------------------------REYEEDSSEY--------- 276
            V+G L +  PP  Q++                           EE+  E          
Sbjct: 249 KVKGGLSIISPPEKQARHQRGSRQEEDEDEDEERQPRHQRGSRQEEEEDEDEERQPRHQR 308

Query: 277 ----------------ERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITT 320
                           ++ + R  GDNG+EET+CT KLR NIG  S  DIY   AG I T
Sbjct: 309 RRGEEEEEDKKERRGSQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSPDIYNPEAGRIKT 368

Query: 321 LNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYD 380
           + S +LPVLRW++LSAE G LH+NAM VPH+NLNA+SI+YA+ G   +QVV+  G +V+D
Sbjct: 369 VTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFD 428

Query: 381 GEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVM 429
           GE+  G+ + VPQN+AV  ++    F +++FKTND A I+ L+G +SV+
Sbjct: 429 GELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVI 477

This protein found in the seeds of many leguminous and non-leguminous plants is the source of sulfur-containing amino acids in seed meals.

Pisum sativum (taxid: 3888)

>sp|P11828|GLYG3_SOYBN Glycinin G3 OS=Glycine max GN=GY3 PE=3 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/440 (44%), Positives = 277/440 (62%), Gaps = 34/440 (7%)

Query: 12  ILFRGC-LAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVV 70
           +LF GC  A + ++  Q N+CQI  L AL+P+NR+E E G +ETW+P ++ FQCAGVA+ 
Sbjct: 11  LLFSGCCFAFSFREQPQQNECQIQRLNALKPDNRIESEGGFIETWNPNNKPFQCAGVALS 70

Query: 71  RHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRS 130
           R T+ +  L  P ++N+PQ +YI Q      G  G  FPG P T++ PQQ G        
Sbjct: 71  RCTLNRNALRRPSYTNAPQEIYIQQG----SGIFGMIFPGCPSTFEEPQQKG----QSSR 122

Query: 131 QQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLA 190
            QD HQKI  FR+GD+ A+P G A+W YN   TPVVAV L+D  +  NQLD+ PR+F+LA
Sbjct: 123 PQDRHQKIYHFREGDLIAVPTGFAYWMYNNEDTPVVAVSLIDTNSFQNQLDQMPRRFYLA 182

Query: 191 GNPHQEFQQQRQQERFGGHQ------------QCNNVFCGFDTRILAEAFNVDERLVRRL 238
           GN  QEF Q + Q++ GG Q            +  ++  GF    L  AF VD ++VR+L
Sbjct: 183 GNQEQEFLQYQPQKQQGGTQSQKGKRQQEEENEGGSILSGFAPEFLEHAFVVDRQIVRKL 242

Query: 239 R--SEKDYRGAIVTVRGQLQVARPP----RTQSQREYEEDSSEYER---SRGRYGGDNGV 289
           +  +E++ +GAIVTV+G L V  PP    + + + E + D  E ++   S+ R    NG+
Sbjct: 243 QGENEEEEKGAIVTVKGGLSVISPPTEEQQQRPEEEEKPDCDEKDKHCQSQSR----NGI 298

Query: 290 EETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVP 349
           +ET+CTM+LR NIG  S  DI+   AG ITT  S + P L W++LSA+ G L +NAM VP
Sbjct: 299 DETICTMRLRHNIGQTSSPDIFNPQAGSITTATSLDFPALSWLKLSAQFGSLRKNAMFVP 358

Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWI 409
           H+NLNA+SI+YA++G   VQVV+  G  V+DGE++ GQ+++VPQNFAV  R+    FE++
Sbjct: 359 HYNLNANSIIYALNGRALVQVVNCNGERVFDGELQEGQVLIVPQNFAVAARSQSDNFEYV 418

Query: 410 SFKTNDNAMISPLSGRTSVM 429
           SFKTND   I  L+G  S++
Sbjct: 419 SFKTNDRPSIGNLAGANSLL 438

Glycinin is the major seed storage protein of soybean.

Glycine max (taxid: 3847)

>sp|P04776|GLYG1_SOYBN Glycinin G1 OS=Glycine max GN=GY1 PE=1 SV=2

 Score =  361 bits (926), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 193/449 (42%), Positives = 277/449 (61%), Gaps = 38/449 (8%)

Query: 12  ILFRGC-LAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVV 70
           +LF GC  A + ++  Q N+CQI  L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ 
Sbjct: 11  LLFSGCCFAFSSREQPQQNECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALS 70

Query: 71  RHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRS 130
           R T+ +  L  P ++N PQ +YI Q     +G  G  +PG P T++ PQQ      + R 
Sbjct: 71  RCTLNRNALRRPSYTNGPQEIYIQQG----KGIFGMIYPGCPSTFEEPQQPQQRGQSSRP 126

Query: 131 QQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLA 190
           Q D HQKI  FR+GD+ A+P GVA W YN   TPVVAV ++D  + +NQLD+ PR+F+LA
Sbjct: 127 Q-DRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLA 185

Query: 191 GNPHQEFQQQRQQERFGGHQ------------QCNNVFCGFDTRILAEAFNVDERLVRRL 238
           GN  QEF + +Q++  GGHQ            +  ++  GF    L  AF+VD+++ + L
Sbjct: 186 GNQEQEFLKYQQEQ--GGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNL 243

Query: 239 RSEKD--YRGAIVTVRGQLQVARPPRTQSQREYEE--------------DSSEYERSRGR 282
           + E +   +GAIVTV+G L V +PP  + Q+  +E                   +R RG 
Sbjct: 244 QGENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGS 303

Query: 283 YGGD--NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGL 340
                 NG++ET+CTM+LR NIG  S  DIY   AG +TT  S + P L W++LSAE G 
Sbjct: 304 QSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGS 363

Query: 341 LHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKR 400
           L +NAM VPH+NLNA+SI+YA++G   +QVV+  G  V+DGE++ G++++VPQNF V  R
Sbjct: 364 LRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAAR 423

Query: 401 AGGAEFEWISFKTNDNAMISPLSGRTSVM 429
           +    FE++SFKTND  MI  L+G  S++
Sbjct: 424 SQSDNFEYVSFKTNDTPMIGTLAGANSLL 452

Glycinin is the major seed storage protein of soybean.

Glycine max (taxid: 3847)

>sp|P05692|LEGJ_PEA Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1

 Score =  358 bits (919), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 190/447 (42%), Positives = 276/447 (61%), Gaps = 51/447 (11%)

Query: 16  GCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIR 75
            CLA + + + + N CQ++++ ALEP++RVE EAG+ ETW+P H + +CAGV+++R TI 
Sbjct: 19  ACLATSSE-FDRLNQCQLDSINALEPDHRVESEAGLTETWNPNHPELKCAGVSLIRRTID 77

Query: 76  QKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSH 135
             GL LP FS SPQL++I+Q     +G  G  FPG PETY+ P+     + + + Q DSH
Sbjct: 78  PNGLHLPSFSPSPQLIFIIQG----KGVLGLSFPGCPETYEEPRSSQSRQESRQQQGDSH 133

Query: 136 QKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQ 195
           QK+RRFR+GDI A+P+G+ +W YN G  P+VA+ LLD +N  NQLD  PR F+L GNP  
Sbjct: 134 QKVRRFRKGDIIAIPSGIPYWTYNHGDEPLVAISLLDTSNIANQLDSTPRVFYLGGNPET 193

Query: 196 EFQQQRQQERFGGHQQ------------------------CNNVFCGFDTRILAEAFNVD 231
           EF +  Q+E+ G H+Q                         N+V  GF +  LA+ FN +
Sbjct: 194 EFPET-QEEQQGRHRQKHSYPVGRRSGHHQQEEESEEQNEGNSVLSGFSSEFLAQTFNTE 252

Query: 232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEY--------------- 276
           E   +RLRS +D R  IV V G L++ +P   + + + +  S  +               
Sbjct: 253 EDTAKRLRSPRDERSQIVRVEGGLRIIKPKGKEEEEKEQSHSHSHREEKEEEEEEEEDEE 312

Query: 277 --ERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQL 334
             +RS  R    NG+EET+C+ K+RENI D ++AD+Y   AG I+T NS  LPVLR+++L
Sbjct: 313 EKQRSEER---KNGLEETICSAKIRENIADAARADLYNPRAGRISTANSLTLPVLRYLRL 369

Query: 335 SAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQN 394
           SAE   L+RN +  PHWN+NA+S++Y I G   V++V+  G +V+D +VR+GQ++VVPQN
Sbjct: 370 SAEYVRLYRNGIYAPHWNINANSLLYVIRGEGRVRIVNCQGNTVFDNKVRKGQLVVVPQN 429

Query: 395 FAVVKRAGGAE-FEWISFKTNDNAMIS 420
           F V ++AG  E  E++ FKTND A +S
Sbjct: 430 FVVAEQAGEEEGLEYVVFKTNDRAAVS 456

This protein found in the seeds of many leguminous and non-leguminous plants is the source of sulfur-containing amino acids in seed meals.

Pisum sativum (taxid: 3888)

>sp|P09800|LEGB_GOSHI Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1

 Score =  357 bits (917), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 273/437 (62%), Gaps = 44/437 (10%)

Query: 31  CQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQL 90
           CQ+ NL AL+P +R   EAG  E WD   +QFQCAGVA +RH I++KGLLLP F+++P L
Sbjct: 50  CQLQNLNALQPKHRFRSEAGETEFWDQNEDQFQCAGVAFLRHKIQRKGLLLPSFTSAPML 109

Query: 91  VYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALP 150
            Y+ Q      G HG  FPG PETYQS  Q    +   R Q+D HQK+RR ++GD+ ALP
Sbjct: 110 FYVEQG----EGIHGAVFPGCPETYQSQSQQNIQD---RPQRDQHQKLRRLKEGDVVALP 162

Query: 151 AGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPH-------QEFQQQRQQ 203
           AGVAHW +N G + +V V L+DV N+ NQLD N RKF LAG+P        Q   + ++Q
Sbjct: 163 AGVAHWIFNNGRSQLVLVALVDVGNDANQLDENFRKFFLAGSPQGGVVRGGQSRDRNQRQ 222

Query: 204 ERFGGHQQC---------NNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQ 254
            R    ++          NNV  GF   +LA+AF +D RL R+L++E+D RGAIV +   
Sbjct: 223 SRTQRGEREEEESQESGGNNVLSGFRDNLLAQAFGIDTRLARKLQNERDNRGAIVRMEHG 282

Query: 255 LQ----------------VARPPRTQSQREYEEDSSEYERSRGRYGGD----NGVEETMC 294
            +                  R P+ Q ++E +E+ SE E    R  G     NG+EET C
Sbjct: 283 FEWPEEGQRRQGREEEGEEEREPKWQRRQESQEEGSEEEEREERGRGRRRSGNGLEETFC 342

Query: 295 TMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLN 354
           +M+L+      S AD++    G ITT+NSFNLP+L+++QLSAERG+L+ NA+  PHWN+N
Sbjct: 343 SMRLKHRT-PASSADVFNPRGGRITTVNSFNLPILQYLQLSAERGVLYNNAIYAPHWNMN 401

Query: 355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN 414
           AHSI+Y   G+  +Q+V   G +++D +V RGQ++ VPQN AVVK+AG   FEWI+FKTN
Sbjct: 402 AHSIVYITRGNGRIQIVSENGEAIFDEQVERGQVITVPQNHAVVKKAGRRGFEWIAFKTN 461

Query: 415 DNAMISPLSGRTSVMRG 431
            NA IS ++GR S+MRG
Sbjct: 462 ANAKISQIAGRVSIMRG 478

This is a seed storage protein.

Gossypium hirsutum (taxid: 3635)

>sp|P07728|GLUA1_ORYSJ Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2

 Score =  354 bits (909), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 190/447 (42%), Positives = 278/447 (62%), Gaps = 36/447 (8%)

Query: 10  LVILFRGCLAA-----NQQQWQQ-----PNDCQINNLEALEPNNRVECEAGVVETWDPGH 59
           L +L  G LA      +  QWQ      P +C+ + L+A EP   V  +AG  E +D  +
Sbjct: 15  LFLLCNGSLAQQLLGQSTSQWQSSRRGSPRECRFDRLQAFEPIRSVRSQAGTTEFFDVSN 74

Query: 60  EQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQ 119
           EQFQC GV+VVR  I  +GLLLP ++N   LVYI+Q     RG  G  FPG PE+YQ   
Sbjct: 75  EQFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQG----RGITGPTFPGCPESYQQQF 130

Query: 120 QGG----FGESAGRSQQ--DSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDV 173
           Q        ES  +SQ+  D HQKI RFRQGD+ ALPAGVAHWCYN+G  PVVA+ + D+
Sbjct: 131 QQSGQAQLTESQSQSQKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDL 190

Query: 174 ANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDER 233
            N  NQLD   R F LAGN       +R+ E     ++  N+F GF T +L+EA  V  +
Sbjct: 191 NNGANQLDPRQRDFLLAGNKRNPQAYRREVE-----ERSQNIFSGFSTELLSEALGVSSQ 245

Query: 234 LVRRLRSEKDYRGAIVTVRGQLQVARP---------PRTQSQREYEEDSSEYERSRGRYG 284
           + R+L+ + D RG IV V   L + +P          + QS+  Y+E   +Y++S+   G
Sbjct: 246 VARQLQCQNDQRGEIVRVEHGLSLLQPYASLQEQEQGQVQSRERYQE--GQYQQSQYGSG 303

Query: 285 GDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRN 344
             NG++ET CT+++R+NI +P++AD Y   AG +T LN+ N P+L  +Q+SA +  L++N
Sbjct: 304 CSNGLDETFCTLRVRQNIDNPNRADTYNPRAGRVTNLNTQNFPILSLVQMSAVKVNLYQN 363

Query: 345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGA 404
           A++ P WN+NAHS++Y   G   VQVV++ G++V++GE+RRGQ++++PQ++AVVK+A   
Sbjct: 364 ALLSPFWNINAHSVVYITQGRARVQVVNNNGKTVFNGELRRGQLLIIPQHYAVVKKAQRE 423

Query: 405 EFEWISFKTNDNAMISPLSGRTSVMRG 431
              +I+FKTN N+M+S ++G++S+ R 
Sbjct: 424 GCAYIAFKTNPNSMVSHIAGKSSIFRA 450

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P05190|LEGB4_VICFA Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1

 Score =  352 bits (902), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 185/431 (42%), Positives = 265/431 (61%), Gaps = 33/431 (7%)

Query: 14  FRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHT 73
           F     A   ++ + N C+++N+ ALEP++RVE EAG+ ETW+P H + +CAGV+++R T
Sbjct: 16  FTSTCLATSSEFDRLNQCRLDNINALEPDHRVESEAGLTETWNPNHPELRCAGVSLIRRT 75

Query: 74  IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQD 133
           I   GL LP +S SPQL+YI+Q     +G  G   PG P+TYQ P+     + + + Q D
Sbjct: 76  IDPNGLHLPSYSPSPQLIYIIQG----KGVIGLTLPGCPQTYQEPRSSQSRQGSRQQQPD 131

Query: 134 SHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP 193
           SHQKIRRFR+GDI A+P+G+ +W YN G  P+VA+ LLD +N  NQLD  PR F+L GNP
Sbjct: 132 SHQKIRRFRKGDIIAIPSGIPYWTYNNGDEPLVAISLLDTSNIANQLDSTPRVFYLVGNP 191

Query: 194 H-------------QEFQQQRQQERFGGH----------QQCNNVFCGFDTRILAEAFNV 230
                          + +      R GG           +  N+V  GF +  LA  FN 
Sbjct: 192 EVEFPETQEEQQERHQQKHSLPVGRRGGQHQQEEESEEQKDGNSVLSGFSSEFLAHTFNT 251

Query: 231 DERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVE 290
           +E   +RLRS +D R  IV V G L++  P   Q + E EE+  +         G NG+E
Sbjct: 252 EEDTAKRLRSPRDKRNQIVRVEGGLRIINPEGQQEEEEEEEEEKQRSEQ-----GRNGLE 306

Query: 291 ETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPH 350
           ET+C++K+RENI  P++AD+Y   AG I+T NS  LP+LR+++LSAE   L+RN +  PH
Sbjct: 307 ETICSLKIRENIAQPARADLYNPRAGSISTANSLTLPILRYLRLSAEYVRLYRNGIYAPH 366

Query: 351 WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAE-FEWI 409
           WN+NA+S++Y I G   V++V+S G +V+D +V +GQ++VVPQNF V ++AG  E  E++
Sbjct: 367 WNINANSLLYVIRGEGRVRIVNSQGNAVFDNKVTKGQLVVVPQNFVVAEQAGEEEGLEYL 426

Query: 410 SFKTNDNAMIS 420
            FKTND A +S
Sbjct: 427 VFKTNDRAAVS 437

This protein found in the seeds of many leguminous and non-leguminous plants is the source of sulfur-containing amino acids in seed meals.

Vicia faba (taxid: 3906)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
171853010	473	Pis v 5.0101 allergen 11S globulin precu	0.942	0.868	0.644	1e-140
25991543	457	allergen Ana o 2 [Anacardium occidentale	0.938	0.894	0.620	1e-140
224085637	480	predicted protein [Populus trichocarpa]	0.889	0.808	0.598	1e-139
158998782	505	11S legumin protein [Carya illinoinensis	0.963	0.831	0.568	1e-135
158998780	505	11S legumin protein [Carya illinoinensis	0.963	0.831	0.570	1e-134
224062141	480	predicted protein [Populus trichocarpa]	0.883	0.802	0.576	1e-132
56788031	507	seed storage protein [Juglans regia]	0.972	0.836	0.557	1e-130
255567250	478	legumin A precursor, putative [Ricinus c	0.954	0.870	0.563	1e-129
255567248	508	legumin A precursor, putative [Ricinus c	0.954	0.818	0.559	1e-129
118340975	487	11S globulin precursor isoform 3B [Ficus	0.938	0.839	0.506	1e-129

>gi|171853010|gb|ACB55490.1| Pis v 5.0101 allergen 11S globulin precusor [Pistacia vera]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/422 (64%), Positives = 330/422 (78%), Gaps = 11/422 (2%)

Query: 14  FRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHT 73
           F GCLA+ +QQ QQ N+CQI+ L+ALEP+NRVE EAG+VETWDP HEQF+CAGVAV RHT
Sbjct: 17  FHGCLAS-RQQGQQQNECQIDQLDALEPDNRVEYEAGMVETWDPNHEQFRCAGVAVARHT 75

Query: 74  IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQD 133
           I+  GL LP++SN+P L+YI++      G  G   PG PETYQ+PQQG     + R Q D
Sbjct: 76  IQPNGLRLPEYSNAPTLMYIVEG----EGMTGTLIPGCPETYQAPQQGQQHGQSSRFQ-D 130

Query: 134 SHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP 193
            HQKI+RFR+GDI ALPAGVA+WCYNEG++PVV V LLDV+N+ NQLD  PRKF+LAGNP
Sbjct: 131 KHQKIQRFRKGDIIALPAGVANWCYNEGNSPVVTVTLLDVSNSQNQLDMYPRKFNLAGNP 190

Query: 194 HQEFQQQRQQERFGGH----QQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV 249
             EFQQQ+QQ+  G      + CNN+FCGFDT+ILAE F V++ LV++L++EKD RGAIV
Sbjct: 191 EDEFQQQQQQQSRGRRQSQQKSCNNIFCGFDTKILAEVFQVEQSLVKQLQNEKDNRGAIV 250

Query: 250 TVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKAD 309
            V+G LQV RPPR QS+R +E    E E  RGR G DNG+EET+CTMKL+ENI DPS++D
Sbjct: 251 KVKGDLQVIRPPRRQSERGFES-EEESEYERGRRGRDNGLEETICTMKLKENIHDPSRSD 309

Query: 310 IYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQ 369
           IYT   G IT+LNS NLP+L+W+QLSAERG+L  NA+MVPHWN NAHSI+Y   G+  VQ
Sbjct: 310 IYTPEVGRITSLNSLNLPILKWLQLSAERGVLQNNALMVPHWNFNAHSIVYGCKGNAQVQ 369

Query: 370 VVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVM 429
           VVD++G +V+DGEV  GQI VVPQNFAVVKRA G  FEWISFKTND AMISPL+G TSV+
Sbjct: 370 VVDNFGNTVFDGEVSEGQIFVVPQNFAVVKRARGQRFEWISFKTNDRAMISPLAGSTSVL 429

Query: 430 RG 431
           R 
Sbjct: 430 RA 431

Source: Pistacia vera

Species: Pistacia vera

Genus: Pistacia

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25991543|gb|AAN76862.1|AF453947_1 allergen Ana o 2 [Anacardium occidentale]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/424 (62%), Positives = 331/424 (78%), Gaps = 15/424 (3%)

Query: 10  LVILFRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAV 69
            +ILF GCLA+ +Q+WQQ ++CQI+ L+ALEP+NRVE EAG VE WDP HEQF+CAGVA+
Sbjct: 5   FLILFHGCLAS-RQEWQQQDECQIDRLDALEPDNRVEYEAGTVEAWDPNHEQFRCAGVAL 63

Query: 70  VRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGR 129
           VRHTI+  GLLLPQ+SN+PQL+Y++Q      G  G  +PG PETYQ+PQQG     +GR
Sbjct: 64  VRHTIQPNGLLLPQYSNAPQLIYVVQG----EGMTGISYPGCPETYQAPQQGRQQGQSGR 119

Query: 130 SQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHL 189
            Q D HQKIRRFR+GDI A+PAGVAHWCYNEG++PVV V LLDV+N+ NQLDR PRKFHL
Sbjct: 120 FQ-DRHQKIRRFRRGDIIAIPAGVAHWCYNEGNSPVVTVTLLDVSNSQNQLDRTPRKFHL 178

Query: 190 AGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV 249
           AGNP   FQQQ+Q +  G      N+F GFDT +LAEAF VDERL+++L+SE D RG IV
Sbjct: 179 AGNPKDVFQQQQQHQSRG-----RNLFSGFDTELLAEAFQVDERLIKQLKSE-DNRGGIV 232

Query: 250 TVRG-QLQVARPPRTQSQREYEEDSSEYERSRGRYGG-DNGVEETMCTMKLRENIGDPSK 307
            V+  +L+V RP R+QS+R  E +    +  R R+G  DNG+EET+CTM+L+ENI DP++
Sbjct: 233 KVKDDELRVIRPSRSQSERGSESEEESEDEKR-RWGQRDNGIEETICTMRLKENINDPAR 291

Query: 308 ADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCH 367
           ADIYT   G +TTLNS NLP+L+W+QLS E+G+L++NA+++PHWNLN+HSI+Y   G   
Sbjct: 292 ADIYTPEVGRLTTLNSLNLPILKWLQLSVEKGVLYKNALVLPHWNLNSHSIIYGCKGKGQ 351

Query: 368 VQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTS 427
           VQVVD++G  V+DGEVR GQ++VVPQNFAVVKRA    FEWISFKTND AM SPL+GRTS
Sbjct: 352 VQVVDNFGNRVFDGEVREGQMLVVPQNFAVVKRAREERFEWISFKTNDRAMTSPLAGRTS 411

Query: 428 VMRG 431
           V+ G
Sbjct: 412 VLGG 415

Source: Anacardium occidentale

Species: Anacardium occidentale

Genus: Anacardium

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085637|ref|XP_002307645.1| predicted protein [Populus trichocarpa] gi|222857094|gb|EEE94641.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/423 (59%), Positives = 309/423 (73%), Gaps = 35/423 (8%)

Query: 26  QQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFS 85
           Q    CQ++ L AL+P NR++ EAG  E+WDP H+QFQCAGVAVVR TI   GLLLP +S
Sbjct: 33  QHQGQCQLDRLNALKPGNRIKSEAGETESWDPNHDQFQCAGVAVVRRTIEPNGLLLPSYS 92

Query: 86  NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAG---RSQQDSHQKIRRFR 142
           N+PQLVYI+Q     RG  G   PG PET+Q  Q     ES G   R  QD HQK+ RFR
Sbjct: 93  NAPQLVYIVQG----RGMTGTLMPGCPETFQESQ-----ESQGQGRRRLQDQHQKVHRFR 143

Query: 143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLD-RNPRKFHLAGNPHQEFQQQR 201
           +GD+ ALPAGVAHWCYN+G   V+AV +LD+AN+ NQLD  NPR F+LAGNP +EFQQ +
Sbjct: 144 EGDVIALPAGVAHWCYNDGKERVIAVTVLDMANSANQLDDMNPRNFYLAGNPQEEFQQVQ 203

Query: 202 QQER-----------FGGH--QQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAI 248
            Q R           F GH  QQCNN+FCG DTR LAEAFNV E++ R+L+SE D RG I
Sbjct: 204 GQPRHRGEQRTGREPFRGHGQQQCNNIFCGMDTRFLAEAFNVSEQVARKLQSESDRRGNI 263

Query: 249 VTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKA 308
           V V+G LQ+  PP   S R+ E++  +    RG +   NG+EETMCTM++RENIGDPS+A
Sbjct: 264 VRVKGGLQIVMPP---SLRQEEQEQGQ----RGEH--RNGLEETMCTMRIRENIGDPSRA 314

Query: 309 DIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHV 368
           D++T  AG I+T+NS NLP+LR+IQLSAERG+L+  AMM+PHWNLNAHSIMYAI G  HV
Sbjct: 315 DVFTPEAGRISTVNSHNLPILRYIQLSAERGVLYNEAMMMPHWNLNAHSIMYAIRGQAHV 374

Query: 369 QVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSV 428
           QVVD  GR+V+DGE+R GQ++ VPQNFAVVKR+    FEW+SFKTNDNAMISPL+GRTS 
Sbjct: 375 QVVDHSGRTVFDGEMREGQVLTVPQNFAVVKRSDQQSFEWVSFKTNDNAMISPLAGRTSA 434

Query: 429 MRG 431
           +R 
Sbjct: 435 LRA 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158998782|gb|ABW86979.1| 11S legumin protein [Carya illinoinensis]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 257/452 (56%), Positives = 316/452 (69%), Gaps = 32/452 (7%)

Query: 8   LNLVILFRGCLA-ANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAG 66
           L +V LF GCLA +  +Q  +   CQ+N L+ALEP NR+E EAGV+E+WDP H+Q QCAG
Sbjct: 13  LIIVALFNGCLAQSGGRQQHKFGQCQLNRLDALEPTNRIEAEAGVIESWDPNHQQLQCAG 72

Query: 67  VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES 126
           VAVVR TI   GLLLP +SN+PQLVYI +     RG  G  FPG PET++  Q+      
Sbjct: 73  VAVVRRTIEPNGLLLPHYSNAPQLVYIARG----RGITGVLFPGCPETFEESQRQSQQGQ 128

Query: 127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRK 186
               QQD HQKIR FR+GDI A PAGVAHWCYN+GS+PVVA+ LLD  NN NQLD+NPR 
Sbjct: 129 RREFQQDRHQKIRHFREGDIIAFPAGVAHWCYNDGSSPVVAIFLLDTHNNANQLDQNPRN 188

Query: 187 FHLAGNPHQEFQQQRQQERFG--------------GHQQ---CNNVFCGFDTRILAEAFN 229
           F+LAGNP  EF+ Q QQE                 G QQ    NNVF GFD   LA+AFN
Sbjct: 189 FYLAGNPDDEFRPQGQQEYEQHRRQQQHQQRRGEHGEQQRDLGNNVFSGFDAEFLADAFN 248

Query: 230 VDERLVRRLRSEKDYRGAIVTVRG-QLQVARP-------PRTQSQREYEEDSSEYERSRG 281
           VD    RRL+SE D+RG+IV V G QLQV RP          + +    E  S  ER + 
Sbjct: 249 VDTETARRLQSENDHRGSIVRVEGRQLQVIRPRWSREEQEHEERKERERERESGSERRQS 308

Query: 282 RYGG--DNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERG 339
           R GG  DNG+EET+CT+ LRENIGDPS+ADIYT+ AG I+T+NS NLP+LRW+QLSAERG
Sbjct: 309 RRGGRDDNGLEETICTLSLRENIGDPSRADIYTEEAGRISTVNSHNLPILRWLQLSAERG 368

Query: 340 LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK 399
            L+ +A+ VPHWNLNAHS++YA+ G   VQVVD++G++V+D E+R GQ++ +PQNFAVVK
Sbjct: 369 ALYSDALYVPHWNLNAHSVVYALRGRAEVQVVDNFGQTVFDDELREGQLLTIPQNFAVVK 428

Query: 400 RAGGAEFEWISFKTNDNAMISPLSGRTSVMRG 431
           RA    FEW+SFKTN+NAM+SPL+GRTS +R 
Sbjct: 429 RARNEGFEWVSFKTNENAMVSPLAGRTSAIRA 460

Source: Carya illinoinensis

Species: Carya illinoinensis

Genus: Carya

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158998780|gb|ABW86978.1| 11S legumin protein [Carya illinoinensis]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/452 (57%), Positives = 317/452 (70%), Gaps = 32/452 (7%)

Query: 8   LNLVILFRGCLA-ANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAG 66
           L +V LF GCLA +  +Q  +   CQ+N L+ALEP NR+E EAGV+E+WDP H+Q QCAG
Sbjct: 13  LIIVALFNGCLAQSGGRQQHKFGQCQLNRLDALEPTNRIEAEAGVIESWDPNHQQLQCAG 72

Query: 67  VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES 126
           VAVVR TI   GLLLP +SN+PQLVYI +     RG  G  FPG PET++  Q+      
Sbjct: 73  VAVVRRTIEPNGLLLPHYSNAPQLVYIARG----RGITGVLFPGCPETFEESQRQSQQGQ 128

Query: 127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRK 186
               QQD HQKIR FR+GDI A PAGVAHWCYN+GS+PVVA+ LLD  NN NQLD+NPR 
Sbjct: 129 RREFQQDRHQKIRHFREGDIIAFPAGVAHWCYNDGSSPVVAIFLLDTHNNANQLDQNPRN 188

Query: 187 FHLAGNPHQEFQQQRQQERFG--------------GHQQ---CNNVFCGFDTRILAEAFN 229
           F+LAGNP  EF+ Q QQE                 G QQ    NNVF GFD   LA+AFN
Sbjct: 189 FYLAGNPDDEFRPQGQQEYEQHRRQQQHQQRRGEHGEQQRDLGNNVFSGFDAEFLADAFN 248

Query: 230 VDERLVRRLRSEKDYRGAIVTVRG-QLQVARP-------PRTQSQREYEEDSSEYERSRG 281
           VD    RRL+SE D+RG+IV V G QLQV RP          + +    E  SE ER + 
Sbjct: 249 VDTETARRLQSENDHRGSIVRVEGRQLQVIRPRWSREEQEHEERKERERERESESERRQS 308

Query: 282 RYGG--DNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERG 339
           R GG  DNG+EET+CT+ LRENIGDPS+ADIYT+ AG I+T+NS NLP+LRW+QLSAERG
Sbjct: 309 RRGGRDDNGLEETICTLSLRENIGDPSRADIYTEEAGRISTVNSHNLPILRWLQLSAERG 368

Query: 340 LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK 399
            L+ +A+ VPHWNLNAHS++YA+ G   VQVVD++G++V+D E+R GQ++ +PQNFAVVK
Sbjct: 369 ALYSDALYVPHWNLNAHSVVYALRGRAEVQVVDNFGQTVFDDELREGQLLTIPQNFAVVK 428

Query: 400 RAGGAEFEWISFKTNDNAMISPLSGRTSVMRG 431
           RA    FEW+SFKTN+NAM+SPL+GRTS +R 
Sbjct: 429 RARDEGFEWVSFKTNENAMVSPLAGRTSAIRA 460

Source: Carya illinoinensis

Species: Carya illinoinensis

Genus: Carya

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062141|ref|XP_002300775.1| predicted protein [Populus trichocarpa] gi|222842501|gb|EEE80048.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/413 (57%), Positives = 303/413 (73%), Gaps = 28/413 (6%)

Query: 33  INNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVY 92
           ++ L AL P++R++CEAGV+E+WDP H+QFQCAGVAVVR TI   GLLLP ++N+PQLVY
Sbjct: 39  LDRLNALRPDDRIKCEAGVIESWDPNHDQFQCAGVAVVRRTIEPNGLLLPSYTNAPQLVY 98

Query: 93  ILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAG 152
           I+Q         G   PG PET+Q  Q+    +S  R  QD HQK+R+FR+GD+ ALPAG
Sbjct: 99  IVQGKVL----TGTLMPGCPETFQESQESRGQDS--RRFQDQHQKVRQFREGDVIALPAG 152

Query: 153 VAHWCYNEGSTPVVAVVLLDVANNDNQLD-RNPRKFHLAGNPHQEF-----------QQQ 200
           VAHW +NEG+ PVVAV ++DVA++ NQLD  +PR F+LAGNP  EF           +QQ
Sbjct: 153 VAHWFFNEGNEPVVAVSVIDVAHSANQLDVLSPRNFYLAGNPEDEFRQVEDQPRRHGEQQ 212

Query: 201 RQQERFGGH--QQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVA 258
             +E + GH  QQCNNVFCG DTR LAEAFN++E++ RRL+ E D RG IV V+G LQ+ 
Sbjct: 213 TGRESYRGHGQQQCNNVFCGMDTRFLAEAFNINEQVARRLQGESDRRGNIVRVKGGLQIV 272

Query: 259 RPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHI 318
           RPP  + + + ++     +         NG+EETMCTM++ ENIGDPS+AD++T  AG I
Sbjct: 273 RPPSLRQEEQIQQQRPGEQF--------NGLEETMCTMRIGENIGDPSRADVFTPEAGRI 324

Query: 319 TTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSV 378
           +T+NS NLP+LR+IQLSAERG+L+  AMMVPHWNLNAHSIMYAI G   +QVVD  GR+V
Sbjct: 325 STVNSHNLPILRYIQLSAERGVLYNEAMMVPHWNLNAHSIMYAIRGQARIQVVDHSGRTV 384

Query: 379 YDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRG 431
           +DGE+R GQ++ VPQNFAVVKRA    FEW+SFKTNDNAMISPL+GRTS +R 
Sbjct: 385 FDGEMREGQVLTVPQNFAVVKRAEQNRFEWVSFKTNDNAMISPLAGRTSAIRA 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56788031|gb|AAW29810.1| seed storage protein [Juglans regia]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/456 (55%), Positives = 315/456 (69%), Gaps = 32/456 (7%)

Query: 4   TCSLLNLVILFRGCLAANQQQWQQPNDCQ-INNLEALEPNNRVECEAGVVETWDPGHEQF 62
           +  L  +V LF GCLA +  + QQ      +N L+ALEP NR+E EAGV+E+WDP ++QF
Sbjct: 8   SIYLFLIVALFNGCLAQSGGRQQQQFGQCQLNRLDALEPTNRIEAEAGVIESWDPNNQQF 67

Query: 63  QCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGG 122
           QCAGVAVVR TI   GLLLPQ+SN+PQLVYI +     RG  G  FPG PET++  Q+  
Sbjct: 68  QCAGVAVVRRTIEPNGLLLPQYSNAPQLVYIARG----RGITGVLFPGCPETFEESQRQS 123

Query: 123 FGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDR 182
               +   QQD HQKIR FR+GDI A PAGVAHW YN+GS PVVA+ LLD  NN NQLD+
Sbjct: 124 QQGQSREFQQDRHQKIRHFREGDIIAFPAGVAHWSYNDGSNPVVAISLLDTNNNANQLDQ 183

Query: 183 NPRKFHLAGNPHQEFQQQRQQE------------RFGGHQQ-----CNNVFCGFDTRILA 225
           NPR F+LAGNP  EF+ Q QQE            R G H Q      NNVF GFD   LA
Sbjct: 184 NPRNFYLAGNPDDEFRPQGQQEYEQHRRQQQRQQRPGEHGQQQRGLGNNVFSGFDADFLA 243

Query: 226 EAFNVDERLVRRLRSEKDYRGAIVTVRG-QLQVARPPRTQSQREYEEDSSEYERSRGRY- 283
           +AFNVD    RRL+SE D+R +IV V G QLQV RP  ++ ++E EE             
Sbjct: 244 DAFNVDTETARRLQSENDHRRSIVRVEGRQLQVIRPRWSREEQEREERKERERERESESE 303

Query: 284 ------GG--DNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLS 335
                 GG  DNG+EET+CT++LRENIGDPS+ADIYT+ AG I+T+NS  LPVLRW+QLS
Sbjct: 304 RRQSRRGGRDDNGLEETICTLRLRENIGDPSRADIYTEEAGRISTVNSHTLPVLRWLQLS 363

Query: 336 AERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF 395
           AERG L+ +A+ VPHWNLNAHS++YA+ G   VQVVD++G++V+D E+R GQ++ +PQNF
Sbjct: 364 AERGALYSDALYVPHWNLNAHSVVYALRGRAEVQVVDNFGQTVFDDELREGQLLTIPQNF 423

Query: 396 AVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRG 431
           AVVKRA    FEW+SFKTN+NAM+SPL+GRTS +R 
Sbjct: 424 AVVKRARNEGFEWVSFKTNENAMVSPLAGRTSAIRA 459

Source: Juglans regia

Species: Juglans regia

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567250|ref|XP_002524606.1| legumin A precursor, putative [Ricinus communis] gi|223536159|gb|EEF37814.1| legumin A precursor, putative [Ricinus communis]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/440 (56%), Positives = 317/440 (72%), Gaps = 24/440 (5%)

Query: 5   CSLLNLVILFRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQC 64
           C+ L L++LF G  A +   +QQ N+CQ+N L A EP+NR++ EAG +E+W+P H+QFQC
Sbjct: 8   CASLCLILLFHGSSAGSS--FQQQNECQLNRLNAFEPDNRIQSEAGTIESWNPNHDQFQC 65

Query: 65  AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFG 124
           AGVAV RHTI  +GLLLP +SN+PQLVYI+Q     RG  G  FPG  ET+Q  QQ    
Sbjct: 66  AGVAVTRHTIEPRGLLLPAYSNAPQLVYIVQG----RGMFGVMFPGCAETFQESQQ---- 117

Query: 125 ESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNP 184
            S+   QQ+ HQKIR FR+GDI ALPAG AHWCYN+GS PVVAV + D ANN NQLDRNP
Sbjct: 118 SSSSSRQQEQHQKIRHFRRGDIIALPAGAAHWCYNDGSEPVVAVTIFDTANNANQLDRNP 177

Query: 185 RKFHLAGNPHQEFQQQ------RQQERFG--GHQQ-----CNNVFCGFDTRILAEAFNVD 231
           R F+LAGNP  EFQ+Q      R+Q R+   G  +     CNNVFCG D+R++AEAFN++
Sbjct: 178 RNFYLAGNPEDEFQKQSRRPGEREQGRYSLSGDSERRRGPCNNVFCGMDSRLIAEAFNIN 237

Query: 232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEE 291
           E+L R+L+SE D+RG IV V G LQV RPPRTQ +RE +E + EYE SRGR    NG+EE
Sbjct: 238 EQLARKLQSENDFRGNIVRVEGDLQVTRPPRTQQEREEQE-AREYEESRGRERTYNGIEE 296

Query: 292 TMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHW 351
           T CTM+++ENI DPS+AD++    G ++T+NS NLP+LR ++LSA   +L  NA+ +PHW
Sbjct: 297 TFCTMRMKENIADPSRADLFVPEVGRMSTVNSHNLPILRSLRLSASHVVLRNNAVRMPHW 356

Query: 352 NLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF 411
           N NAHS++YAI G   +QVVD  G SV+DG VR+GQ++ VPQNF VVKRA    FE+++F
Sbjct: 357 NTNAHSVIYAIRGQAQIQVVDENGNSVFDGNVRQGQVLTVPQNFMVVKRAESDRFEYVAF 416

Query: 412 KTNDNAMISPLSGRTSVMRG 431
           KTNDNAM    +GRTS +R 
Sbjct: 417 KTNDNAMTFDAAGRTSAIRA 436

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567248|ref|XP_002524605.1| legumin A precursor, putative [Ricinus communis] gi|223536158|gb|EEF37813.1| legumin A precursor, putative [Ricinus communis]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/440 (55%), Positives = 315/440 (71%), Gaps = 24/440 (5%)

Query: 5   CSLLNLVILFRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQC 64
           C+ L L++LF G  A +   +QQ N+CQ+N L A EP+NR++ EAG +E+W+P H+QFQC
Sbjct: 38  CASLCLILLFHGSSAGSS--FQQQNECQLNRLNAFEPDNRIQSEAGTIESWNPNHDQFQC 95

Query: 65  AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFG 124
           AGVAV RHTI  +GLLLP +SN+PQLVYI+Q     RG  G  FPG  ET+Q  QQ    
Sbjct: 96  AGVAVTRHTIEPRGLLLPAYSNAPQLVYIVQG----RGMFGVMFPGCSETFQESQQ---- 147

Query: 125 ESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNP 184
            S+   QQ+ HQKIR FR+GDI ALPAG AHWCYN+G+ PVVAV + D ANN NQLDRNP
Sbjct: 148 SSSSSGQQEQHQKIRHFRRGDIIALPAGAAHWCYNDGNEPVVAVTVFDTANNANQLDRNP 207

Query: 185 RKFHLAGNPHQEFQQQ------RQQERF---GGHQQ----CNNVFCGFDTRILAEAFNVD 231
           R F+LAGNP  EFQ+Q      R+Q R+   G  ++    CNNVFCG D+R++AEAFN++
Sbjct: 208 RNFYLAGNPEDEFQKQSRRPGEREQGRYSLSGASERRRGSCNNVFCGMDSRLIAEAFNIN 267

Query: 232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEE 291
           E+L R+L+SE D+RG IV V G LQV RPPRTQ +RE +E     E SRG     NG+EE
Sbjct: 268 EQLARKLQSENDFRGNIVWVEGDLQVTRPPRTQQEREEQEAREYEE-SRGHERTYNGIEE 326

Query: 292 TMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHW 351
           T CTM+++ENI DPS+ADI+    G ++T+NS NLP+LR ++LSA   +L  NA+ +PHW
Sbjct: 327 TFCTMRMKENIADPSRADIFVPEVGRMSTVNSHNLPILRSLRLSASHVVLRNNAVRMPHW 386

Query: 352 NLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF 411
           N NAHS++YAI G   +QVVD  GRSV+DG VR+GQ++ VPQNF VVKRA    FE+++F
Sbjct: 387 NTNAHSVIYAIRGQAQIQVVDENGRSVFDGNVRQGQVLTVPQNFMVVKRAESDRFEYVAF 446

Query: 412 KTNDNAMISPLSGRTSVMRG 431
           KTNDNAM    +GRTS +R 
Sbjct: 447 KTNDNAMTFDAAGRTSAIRA 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118340975|gb|ABK80755.1| 11S globulin precursor isoform 3B [Ficus pumila var. awkeotsang]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/438 (50%), Positives = 306/438 (69%), Gaps = 29/438 (6%)

Query: 14  FRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHT 73
           F GC A    Q+Q+ ++CQ+N LEA EP+NR++CE G++E+W+P HEQFQC GVA+VR T
Sbjct: 18  FHGCSARRTGQFQRQDECQLNRLEAREPDNRLQCEGGLLESWNPNHEQFQCVGVALVRLT 77

Query: 74  IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQD 133
           I+  GL LP ++NSPQLV+I++     RG  G  FPG PET++  Q+G       +S QD
Sbjct: 78  IQPNGLHLPSYTNSPQLVHIVRG----RGVVGTLFPGCPETFEESQRG-----TSQSSQD 128

Query: 134 SHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP 193
            HQK+ R R+GD+ ALPAGVA+W YN+G  P+V V L DV+N++NQLDR PR+F+LAGNP
Sbjct: 129 RHQKVHRIREGDVLALPAGVAYWSYNDGDQPLVVVSLFDVSNHENQLDRFPRRFYLAGNP 188

Query: 194 HQEFQQQRQQERFGGH-----------------QQCNNVFCGFDTRILAEAFNVDERLVR 236
           HQEF + R+QE++G                      NNVF GF+ + + EAF VD    R
Sbjct: 189 HQEFLKSRRQEQYGEQGSQQERRREEQQQQEQGSYINNVFSGFNLQFIQEAFKVDTETAR 248

Query: 237 RLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYE---EDSSEYERSRGRYGGDNGVEETM 293
           R++S+KD RG+I+ V+ +L   RP  ++ ++E+E   E+  + ER   R  G NG+EET 
Sbjct: 249 RIQSQKDRRGSIIRVKEKLDFVRPSTSREEQEHEMRQEEQRQTERQFAREQGHNGLEETF 308

Query: 294 CTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNL 353
           CTM LRENIGDPS+AD+++  AG ++++NS+NLP+L W+QLSAERG L+ NA+  PHWN 
Sbjct: 309 CTMSLRENIGDPSRADVFSPQAGRLSSVNSYNLPILNWLQLSAERGFLYSNALYSPHWNK 368

Query: 354 NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKT 413
           NAH ++YAI GS   QVVD +GR+V+DG +R+GQ + VPQNF +VK+A    FEW+SFKT
Sbjct: 369 NAHGVIYAIRGSARCQVVDDFGRTVFDGHLRQGQALTVPQNFVIVKQAENEGFEWVSFKT 428

Query: 414 NDNAMISPLSGRTSVMRG 431
           ND A ++ L+GRTS M+ 
Sbjct: 429 NDRAKVNQLAGRTSFMQA 446

Source: Ficus pumila var. awkeotsang

Species: Ficus pumila

Genus: Ficus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
TAIR|locus:2121308	524	CRU3 "AT4G28520" [Arabidopsis	0.731	0.608	0.396	4e-83
TAIR|locus:2167654	472	CRA1 "CRUCIFERINA" [Arabidopsi	0.956	0.883	0.397	3.3e-79
UNIPROTKB|Q9XHP0	459	Q9XHP0 "11S globulin seed stor	0.871	0.827	0.366	4.4e-68
UNIPROTKB|Q9M4Q7	353	Q9M4Q7 "Seed storage protein"	0.694	0.858	0.429	4e-67
TAIR|locus:2024234	455	CRU2 "AT1G03880" [Arabidopsis	0.786	0.753	0.388	8.5e-65
TAIR|locus:2024219	451	AT1G03890 [Arabidopsis thalian	0.463	0.447	0.470	3.7e-48
TAIR|locus:2065516	356	AT2G28680 "AT2G28680" [Arabido	0.279	0.342	0.292	3.5e-19
TAIR|locus:2026545	356	AT1G07750 "AT1G07750" [Arabido	0.279	0.342	0.284	1.2e-14
TAIR|locus:2056568	511	AT2G28490 [Arabidopsis thalian	0.201	0.172	0.319	5.6e-06

TAIR|locus:2121308 CRU3 "AT4G28520" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
 Identities = 134/338 (39%), Positives = 198/338 (58%)

Query:   100 RRGSHGDPFPGYPETYQSPQQGGFGES-AGRSQQ------DSHQKIRRFRQGDIFALPAG 152
             ++G  G P+ G  +  Q  +QG  G+   G+ QQ      D HQK+   R+GD+FA   G
Sbjct:   151 QQGRQGQPWEGQGQQGQQGRQGQQGQPWEGQGQQGQQGFRDMHQKVEHVRRGDVFANTPG 210

Query:   153 VAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXXXXXXXXXC 212
              AHW YN G  P                 RNPR FHLAGN                    
Sbjct:   211 SAHWIYNSGEQPLVIIALLDIANYQNQLDRNPRVFHLAGNNQQGGFGGSQQQQEQ----- 265

Query:   213 NNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQXXXXXX 272
              N++ GFD +++A+A  +D +L ++L++++D RG IV V+G  QV RPP  Q        
Sbjct:   266 KNLWSGFDAQVIAQALKIDVQLAQQLQNQQDSRGNIVRVKGPFQVVRPPLRQPYESEEWR 325

Query:   273 XXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWI 332
                           NG+EET+C+M+  ENI DP++AD+Y    G +T++NS+ LP+L ++
Sbjct:   326 HPRSPQG-------NGLEETICSMRSHENIDDPARADVYKPSLGRVTSVNSYTLPILEYV 378

Query:   333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVP 392
             +LSA RG+L  NAM++P +N+NA+ I+Y   G   +QVV+  G++V D +V++GQ++V+P
Sbjct:   379 RLSATRGVLQGNAMVLPKYNMNANEILYCTGGQGRIQVVNDNGQNVLDQQVQKGQLVVIP 438

Query:   393 QNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMR 430
             Q FA V ++ G +FEWISFKTN+NAMIS L+GRTS++R
Sbjct:   439 QGFAYVVQSHGNKFEWISFKTNENAMISTLAGRTSLLR 476

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;TAS

GO:0042735 "protein body" evidence=TAS

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2167654 CRA1 "CRUCIFERINA" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 175/440 (39%), Positives = 249/440 (56%)

Query:     1 MANTCSLLN----LVILFRGCLAANXXXXXX-PNDCQINNLEALEPNNRVECEAGVVETW 55
             MA   SLL+    L+ILF G  A         PN+CQ++ L ALEP++ ++ EAG +E W
Sbjct:     1 MARVSSLLSFCLTLLILFHGYAAQQGQQGQQFPNECQLDQLNALEPSHVLKSEAGRIEVW 60

Query:    56 DPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETY 115
             D    Q +C+GV+  R+ I  KGL LP F N+ +L ++ +     RG  G   PG  ET+
Sbjct:    61 DHHAPQLRCSGVSFARYIIESKGLYLPSFFNTAKLSFVAKG----RGLMGKVIPGCAETF 116

Query:   116 Q--SPQQGGFGESAGRSQQ--DSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXX 171
             Q  S  Q  F E  G+SQ+  D HQK+   R GD  A   GVA W YN+G  P       
Sbjct:   117 QDSSEFQPRF-EGQGQSQRFRDMHQKVEHIRSGDTIATTPGVAQWFYNDGQEPLVIVSVF 175

Query:   172 XXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVD 231
                       RNPR F+LAGN                     N+F GF   ++A+A  +D
Sbjct:   176 DLASHQNQLDRNPRPFYLAGNNPQGQVWLQGREQQPQ----KNIFNGFGPEVIAQALKID 231

Query:   232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQXXXXXXXXXXXXXXXXXXXXNGVEE 291
              +  ++L+++ D RG IV V+G   V RPP  + Q                    NG+EE
Sbjct:   232 LQTAQQLQNQDDNRGNIVRVQGPFGVIRPP-LRGQRPQEEEEEEGRHGRHG----NGLEE 286

Query:   292 TMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHW 351
             T+C+ +  +N+ DPS+AD+Y    G+I+TLNS++LP+LR+I+LSA RG + +NAM++P W
Sbjct:   287 TICSARCTDNLDDPSRADVYKPQLGYISTLNSYDLPILRFIRLSALRGSIRQNAMVLPQW 346

Query:   352 NLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF 411
             N NA++I+Y   G   +Q+V+  G  V+DG+V +GQ++ VPQ F+VVKRA    F+W+ F
Sbjct:   347 NANANAILYVTDGEAQIQIVNDNGNRVFDGQVSQGQLIAVPQGFSVVKRATSNRFQWVEF 406

Query:   412 KTNDNAMISPLSGRTSVMRG 431
             KTN NA I+ L+GRTSV+RG
Sbjct:   407 KTNANAQINTLAGRTSVLRG 426

GO:0005634 "nucleus" evidence=ISM

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0010162 "seed dormancy process" evidence=RCA

UNIPROTKB|Q9XHP0 Q9XHP0 "11S globulin seed storage protein 2" [Sesamum indicum (taxid:4182)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 149/407 (36%), Positives = 217/407 (53%)

Query:    31 CQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQL 90
             C+   +   +P+ R++ E G  E WD   EQFQCAG+  +R TIR  GL LP +  SP+L
Sbjct:    34 CRFQRISGAQPSLRIQSEGGTTELWDERQEQFQCAGIVAMRSTIRPNGLSLPNYHPSPRL 93

Query:    91 VYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQ-------DSHQKIRRFRQ 143
             VYI +     +G      PG  ETYQ  +     E    S+Q       D HQK+ R RQ
Sbjct:    94 VYIERG----QGLISIMVPGCAETYQVHRSQRTMERTEASEQQDRGSVRDLHQKVHRLRQ 149

Query:   144 GDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXX 203
             GDI A+P+G AHWCYN+GS                   +  R F+LAG            
Sbjct:   150 GDIVAIPSGAAHWCYNDGSEDLVAVSINDVNHLSNQLDQKFRAFYLAGGVPRSGEQEQQA 209

Query:   204 XXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRT 263
                      +N+F  FD  +L+EAFNV +  +RR++SE++ RG IV  R ++   RP   
Sbjct:   210 RQTF-----HNIFRAFDAELLSEAFNVPQETIRRMQSEEEERGLIVMARERMTFVRPDEE 264

Query:   264 QSQXXXXXXXXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNS 323
             + +                    NG+EET CTMK R N+    +ADI+++ AG +  ++ 
Sbjct:   265 EGEQEHRGRQLD-----------NGLEETFCTMKFRTNVESRREADIFSRQAGRVHVVDR 313

Query:   324 FNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEV 383
               LP+L+++ LSAE+G L+ NA++ P W++  H+I+Y   G   VQVVD  G+++ +  V
Sbjct:   314 NKLPILKYMDLSAEKGNLYSNALVSPDWSMTGHTIVYVTRGDAQVQVVDHNGQALMNDRV 373

Query:   384 RRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMR 430
              +G++ VVPQ +    RAG   FEW++FKT  + M SPL+G TSV+R
Sbjct:   374 NQGEMFVVPQYYTSTARAGNNGFEWVAFKTTGSPMRSPLAGYTSVIR 420

GO:0042735 "protein body" evidence=NAS

GO:0045735 "nutrient reservoir activity" evidence=NAS

GO:0051259 "protein oligomerization" evidence=NAS

UNIPROTKB|Q9M4Q7 Q9M4Q7 "Seed storage protein" [Ricinus communis (taxid:3988)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 135/314 (42%), Positives = 183/314 (58%)

Query:   128 GRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKF 187
             G+S++D HQK+R+ R+GD+ AL AGVA W YN G +P                 +N R F
Sbjct:     2 GQSRRDQHQKVRQIREGDVIALHAGVAQWIYNNGRSPLVLVQIIDTSNPANQLDQNHRDF 61

Query:   188 HLAGNPXXX----------XXXXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRR 237
              LAGNP                              NVF G D R++AE+FN++  L R+
Sbjct:    62 FLAGNPQREVQSQRGERGRTSERRSTSTGSAHDNSGNVFSGMDERVIAESFNINTDLARK 121

Query:   238 LRSEKDYRGAIVTVRGQLQVARPPRTQSQXXXXXXXXXXXXXXXX-XXXXNGVEETMCTM 296
             LR E D RG IV+V   L++  P R+Q +                     NG+EET CT 
Sbjct:   122 LRGENDLRGIIVSVEHDLEMLAPQRSQEEEREEREEEAQRQLERSPRARFNGLEETFCTR 181

Query:   297 KLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAH 356
             +LR NI  PS+ADIY   AG +T++NS NLP+LR++QLS ++ +L++NA+M PHWN+NAH
Sbjct:   182 RLRHNINKPSEADIYNPRAGRVTSVNSHNLPILRYLQLSIQKAVLYKNALMTPHWNINAH 241

Query:   357 SIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDN 416
             SI Y   GS  VQ+V+  G SV+DG+V+RGQ+  VPQNF V+ +A     EW+SFKTNDN
Sbjct:   242 SIRYITRGSGRVQIVNENGDSVFDGQVQRGQMFTVPQNFVVITKASNEGLEWVSFKTNDN 301

Query:   417 AMISPLSGRTSVMR 430
             A I+ L+GR S +R
Sbjct:   302 AKINQLAGRVSAIR 315

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2024234 CRU2 "AT1G03880" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 143/368 (38%), Positives = 203/368 (55%)

Query:    74 IRQKGLLLPQFSNSPQLVYI--------LQAYTYRRGSHGDPFPGYPETYQSPQQGGFGE 125
             +R  G    +F   PQ +++        L    + RG  G   PG  ET+      G G+
Sbjct:    61 LRCSGFAFERFVIEPQGLFLPTFLNAGKLTFVVHGRGLMGRVIPGCAETFMESPVFGEGQ 120

Query:   126 SAGRSQ--QDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRN 183
               G+SQ  +D HQK+   R GD  A P+GVA W YN G+ P                 RN
Sbjct:   121 GQGQSQGFRDMHQKVEHLRCGDTIATPSGVAQWFYNNGNEPLILVAAADLASNQNQLDRN 180

Query:   184 PRKFHLAGNPXXXXXXXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD 243
              R F +AGN                    NN+F GF   ILA+AF ++    ++L++++D
Sbjct:   181 LRPFLIAGNNPQGQEWLQGRKQQKQ----NNIFNGFAPEILAQAFKINVETAQQLQNQQD 236

Query:   244 YRGAIVTVRGQLQVARPPRTQSQXXXXXXXXXXXXXXXXXXXXNGVEETMCTMKLRENIG 303
              RG IV V G   V RPP  + +                    NG+EET+CTM+  EN+ 
Sbjct:   237 NRGNIVKVNGPFGVIRPPLRRGEGGQQPHEIA-----------NGLEETLCTMRCTENLD 285

Query:   304 DPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAIS 363
             DPS AD+Y    G+I+TLNS+NLP+LR ++LSA RG + +NAM++P WN+NA++ +Y  +
Sbjct:   286 DPSDADVYKPSLGYISTLNSYNLPILRLLRLSALRGSIRKNAMVLPQWNVNANAALYVTN 345

Query:   364 GSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLS 423
             G  H+Q+V+  G  V+D E+  GQ++VVPQ F+V+K A G +FEWI FKTN+NA ++ L+
Sbjct:   346 GKAHIQMVNDNGERVFDQEISSGQLLVVPQGFSVMKHAIGEQFEWIEFKTNENAQVNTLA 405

Query:   424 GRTSVMRG 431
             GRTSVMRG
Sbjct:   406 GRTSVMRG 413

GO:0009845 "seed germination" evidence=RCA;TAS

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2024219 AT1G03890 [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 103/219 (47%), Positives = 139/219 (63%)

Query:   213 NNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQ-VARPPRTQSQXXXXX 271
             NN F GFD  I+AEAF ++    ++L+++KD RG I+   G L  V  PPR   Q     
Sbjct:   211 NNAFSGFDPNIIAEAFKINIETAKQLQNQKDNRGNIIRANGPLHFVIPPPREWQQDGIA- 269

Query:   272 XXXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRW 331
                            NG+EET CT K+ ENI DP ++D ++  AG I+TLNS NLPVLR 
Sbjct:   270 ---------------NGIEETYCTAKIHENIDDPERSDHFSTRAGRISTLNSLNLPVLRL 314

Query:   332 IQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVV 391
             ++L+A RG L+   M++P W  NAH+++Y   G   +QVVD  G+SV++ +V +GQI+V+
Sbjct:   315 VRLNALRGYLYSGGMVLPQWTANAHTVLYVTGGQAKIQVVDDNGQSVFNEQVGQGQIIVI 374

Query:   392 PQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMR 430
             PQ FAV K AG   FEWISFKTNDNA I+ LSG+TS +R
Sbjct:   375 PQGFAVSKTAGETGFEWISFKTNDNAYINTLSGQTSYLR 413

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

TAIR|locus:2065516 AT2G28680 "AT2G28680" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 3.5e-19, Sum P(4) = 3.5e-19
 Identities = 36/123 (29%), Positives = 65/123 (52%)

Query:   309 DIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLN-AHSIMYAISGSCH 367
             D+  +  G +  LN+ NLP++  +   A+   +  ++M  P ++ + A  + Y + GS  
Sbjct:   198 DVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDGHSMCSPGFSCDSALQVTYIVGGSGR 257

Query:   368 VQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTS 427
             VQ+V + G+ V +  V+ G + +VP+ F V K A      W S  T  + + + L+GRTS
Sbjct:   258 VQIVGADGKRVLETHVKAGVLFIVPRFFVVSKIADSDGLSWFSIVTTPDPIFTHLAGRTS 317

Query:   428 VMR 430
             V +
Sbjct:   318 VWK 320

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

TAIR|locus:2026545 AT1G07750 "AT1G07750" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
 Identities = 35/123 (28%), Positives = 63/123 (51%)

Query:   309 DIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLN-AHSIMYAISGSCH 367
             D+  +  G +  LN+ NLP++  +   A+   +  ++M  P ++ + A  + Y + GS  
Sbjct:   198 DVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDAHSMCSPGFSCDSALQVTYIVGGSGR 257

Query:   368 VQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTS 427
             VQVV   G+ V +  ++ G + +VP+ F V K A      W S  T  + + + L+G TS
Sbjct:   258 VQVVGGDGKRVLETHIKAGSLFIVPRFFVVSKIADADGMSWFSIVTTPDPIFTHLAGNTS 317

Query:   428 VMR 430
             V +
Sbjct:   318 VWK 320

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2056568 AT2G28490 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 5.6e-06, Sum P(4) = 5.6e-06
 Identities = 30/94 (31%), Positives = 44/94 (46%)

Query:   341 LHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFA---V 397
             L   AMM PH N  A      ++GS  +QVV   G S  +  V  G +  +P+ FA   +
Sbjct:   370 LTAGAMMAPHMNPTATEYGIVLAGSGEIQVVFPNGTSAMNTRVSVGDVFWIPRYFAFCQI 429

Query:   398 VKRAGGAEFEWISFKTNDNAMISP-LSGRTSVMR 430
               R G   FE++ F T+ +      L G  S++R
Sbjct:   430 ASRTG--PFEFVGFTTSAHKNRPQFLVGSNSLLR 461

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P11828	GLYG3_SOYBN	No assigned EC number	0.4477	0.9311	0.8440	yes	no
P04776	GLYG1_SOYBN	No assigned EC number	0.4298	0.9426	0.8303	yes	no
P15455	CRU4_ARATH	No assigned EC number	0.4479	0.9518	0.8792	yes	no
P07728	GLUA1_ORYSJ	No assigned EC number	0.4250	0.9426	0.8236	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	436
PLN00212	493	PLN00212, PLN00212, glutelin; Provisional	1e-142
smart00835	146	smart00835, Cupin_1, Cupin	4e-39
pfam00190	139	pfam00190, Cupin_1, Cupin	9e-32
pfam00190	139	pfam00190, Cupin_1, Cupin	4e-26
smart00835	146	smart00835, Cupin_1, Cupin	4e-20

>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional

 Score =  415 bits (1069), Expect = e-142
 Identities = 189/438 (43%), Positives = 280/438 (63%), Gaps = 24/438 (5%)

Query: 10  LVILFRGCLAA----NQQQWQQP-----NDCQINNLEALEPNNRVECEAGVVETWDPGHE 60
           +++L  G +A     +   WQ P      +C+ + L+A EP  +V  EAGV E +D  +E
Sbjct: 14  VLLLCHGSMAQLFSQSTNPWQSPRQGSFRECRFDRLQAFEPLRKVRSEAGVTEYFDEKNE 73

Query: 61  QFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSP-Q 119
           QFQC GV V+R  I  +GLLLP++SN+P LVYI+Q     RGS G  FPG P TYQ   Q
Sbjct: 74  QFQCTGVFVIRRVIEPQGLLLPRYSNTPGLVYIIQG----RGSMGLTFPGCPATYQQQFQ 129

Query: 120 QGGF-GESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDN 178
           Q    G+S  +  +D HQKI +FRQGD+ ALPAGVAHW YN+G  PVVA+ + D+ NN N
Sbjct: 130 QFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNAN 189

Query: 179 QLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRL 238
           QL+   R+F LAGN +++ Q   +       Q   N+F GF T +L+EA  ++ ++ +RL
Sbjct: 190 QLEPRQREFLLAGNNNRQQQVYGRSIEQHSGQ---NIFSGFSTELLSEALGINAQVAKRL 246

Query: 239 RSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSS------EYERSRGRYGGDNGVEET 292
           +S+ D RG I+ V+  LQ+ +P  TQ Q + ++         +Y++S+   G  NG++E 
Sbjct: 247 QSQNDQRGEIIRVKNGLQLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDEN 306

Query: 293 MCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWN 352
            CT+K+R NI +PS+AD Y   AG IT LNS   P+L  IQ+SA R  L++NA++ P WN
Sbjct: 307 FCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWN 366

Query: 353 LNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK 412
           +NAHS++Y   G   VQVV + G++V++G +R GQ++++PQ++AV+K+A     ++I+FK
Sbjct: 367 VNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREGCQYIAFK 426

Query: 413 TNDNAMISPLSGRTSVMR 430
           TN NAM+S ++G+ S+ R
Sbjct: 427 TNANAMVSHIAGKNSIFR 444

Length = 493

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score =  137 bits (347), Expect = 4e-39
 Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 1/127 (0%)

Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
                ++   G +   +  N P L  + +SA R  L    M+ PH++  A  ++Y + G 
Sbjct: 2   EPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGE 61

Query: 366 CHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAE-FEWISFKTNDNAMISPLSG 424
             V VVD  G  VYD  +R G + VVPQ     +   G E  E+++F TND      L+G
Sbjct: 62  GRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAG 121

Query: 425 RTSVMRG 431
           R SV+RG
Sbjct: 122 RNSVLRG 128

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score =  117 bits (296), Expect = 9e-32
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 300 ENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLH-RNAMMVPHWNLNAHSI 358
            N+ +PS   ++    G + T N  NLP L  +  SA R  L     +++PH++ NA  I
Sbjct: 1   FNLLEPS--PVFNSEGGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEI 58

Query: 359 MYAISGS-CHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAE-FEWISFKTNDN 416
           +Y + G      VV   G  V+  ++R G + VVP  FA  +   G    E ++F TN+ 
Sbjct: 59  LYVLQGRGRVGFVVPGCGFRVFHQKLREGDVFVVPAGFAHWQYNSGDPGLELVAFDTNNP 118

Query: 417 AMISP 421
           A   P
Sbjct: 119 ANQLP 123

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score =  102 bits (256), Expect = 4e-26
 Identities = 58/163 (35%), Positives = 74/163 (45%), Gaps = 31/163 (19%)

Query: 36  LEALEPNNRVECEAGVVETWDPG--HEQFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVY 92
              LEP+     E G +ET +P         AG AV R  I   GLLLP +  N+ +++Y
Sbjct: 1   FNLLEPSPVFNSEGGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILY 60

Query: 93  ILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAG 152
           +LQ     RG  G   P                  G   +  HQK+   R+GD+F +PAG
Sbjct: 61  VLQG----RGRVGFVVP------------------GCGFRVFHQKL---REGDVFVVPAG 95

Query: 153 VAHWCYNEGSTPVVAVVLLDVANNDNQLDR--NPRKFHLAGNP 193
            AHW YN G  P + +V  D  N  NQL R    R F LAGN 
Sbjct: 96  FAHWQYNSG-DPGLELVAFDTNNPANQLPREVLARAFFLAGNE 137

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 44/200 (22%), Positives = 65/200 (32%), Gaps = 56/200 (28%)

Query: 39  LEPNNRVECEAGVVETWDPG-HEQFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQA 96
           LEP      E G +   DP         G++  R  +   G+L P +   + +L+Y+++ 
Sbjct: 1   LEPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRG 60

Query: 97  YTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHW 156
                G  G   P                        +     R R+GD+F +P G  H+
Sbjct: 61  ----EGRVGVVDPN----------------------GNKVYDARLREGDVFVVPQGHPHF 94

Query: 157 CYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVF 216
             N G   +  V       N        R+F LAG                     N+V 
Sbjct: 95  QVNSGDENLEFVAFNTNDPN--------RRFFLAGR--------------------NSVL 126

Query: 217 CGFDTRILAEAFNVDERLVR 236
            G    +LA AF V    VR
Sbjct: 127 RGLPPEVLAAAFGVSAEEVR 146

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
PLN00212	493	glutelin; Provisional	100.0
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	100.0
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.93
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.88
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.87
PLN00212	493	glutelin; Provisional	99.85
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.81
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.79
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.7
PRK11171	266	hypothetical protein; Provisional	99.5
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.47
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.26
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.11
COG1917	131	Uncharacterized conserved protein, contains double	99.1
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.07
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	99.06
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.95
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.95
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.9
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	98.89
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	98.79
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.77
COG3837	161	Uncharacterized conserved protein, contains double	98.7
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.6
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.6
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.59
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.56
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.56
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	98.55
PRK11171	266	hypothetical protein; Provisional	98.53
COG1917	131	Uncharacterized conserved protein, contains double	98.38
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.22
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.21
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.2
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.19
COG4297	163	Uncharacterized protein containing double-stranded	98.13
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.11
COG3837	161	Uncharacterized conserved protein, contains double	98.04
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.0
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	97.99
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	97.97
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.97
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	97.96
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.84
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	97.82
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.77
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.72
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.68
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.63
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	97.54
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.52
COG1791	181	Uncharacterized conserved protein, contains double	97.49
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.49
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	97.44
COG4297	163	Uncharacterized protein containing double-stranded	97.39
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	97.37
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.37
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.35
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.31
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.3
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	97.29
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.19
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.14
PRK13501	290	transcriptional activator RhaR; Provisional	97.1
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	97.09
PRK13500	312	transcriptional activator RhaR; Provisional	97.03
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	96.96
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	96.93
PRK13503	278	transcriptional activator RhaS; Provisional	96.84
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	96.84
PRK13502	282	transcriptional activator RhaR; Provisional	96.79
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	96.79
PRK13500	312	transcriptional activator RhaR; Provisional	96.76
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	96.7
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	96.65
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	96.61
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	96.54
COG1791	181	Uncharacterized conserved protein, contains double	96.53
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	96.52
PRK13502	282	transcriptional activator RhaR; Provisional	96.5
PRK13501	290	transcriptional activator RhaR; Provisional	96.47
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	96.46
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	96.41
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	96.4
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	96.33
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	96.32
PRK15131	389	mannose-6-phosphate isomerase; Provisional	96.11
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	96.05
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.01
COG3450	116	Predicted enzyme of the cupin superfamily [General	95.99
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	95.95
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	95.89
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	95.86
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	95.77
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	95.68
PRK13503	278	transcriptional activator RhaS; Provisional	95.44
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	95.29
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	95.26
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.24
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	95.03
COG3257	264	GlxB Uncharacterized protein, possibly involved in	94.88
KOG2107	179	consensus Uncharacterized conserved protein, conta	94.56
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	94.56
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	94.46
COG3450	116	Predicted enzyme of the cupin superfamily [General	94.3
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	94.16
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	93.72
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	93.65
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	93.58
COG2850	383	Uncharacterized conserved protein [Function unknow	92.93
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	92.88
PF12852	186	Cupin_6: Cupin	92.83
KOG2107	179	consensus Uncharacterized conserved protein, conta	92.83
KOG3706	629	consensus Uncharacterized conserved protein [Funct	92.07
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	91.06
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	90.92
COG3257	264	GlxB Uncharacterized protein, possibly involved in	90.37
PRK12335	287	tellurite resistance protein TehB; Provisional	90.2
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	89.96
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	89.89
TIGR02466	201	conserved hypothetical protein. This family consis	89.86
PF12852	186	Cupin_6: Cupin	89.67
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	89.27
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	88.35
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	87.72
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	86.27
PF13464	77	DUF4115: Domain of unknown function (DUF4115)	86.04
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	85.84
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	85.72
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	84.67
PRK15131	389	mannose-6-phosphate isomerase; Provisional	84.62
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	83.56
PLN02658	435	homogentisate 1,2-dioxygenase	82.77
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	82.31
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	82.16
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	82.12
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	81.91
PRK10579	94	hypothetical protein; Provisional	81.44
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	81.13
PLN02658	435	homogentisate 1,2-dioxygenase	80.78

>PLN00212 glutelin; Provisional

Probab=100.00  E-value=7.7e-110  Score=868.23  Aligned_cols=424  Identities=44%  Similarity=0.758  Sum_probs=374.7

Q ss_pred             hhhHHHHHHHhcccccccc-------cc-cc--CCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEE
Q 046186            4 TCSLLNLVILFRGCLAANQ-------QQ-WQ--QPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHT   73 (436)
Q Consensus         4 ~~~~l~~~~l~~~~~a~~~-------~~-~~--~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~   73 (436)
                      |+|+|||||||++|+|+..       ++ ++  + ++|++++|+|+||+++|+||||++|+||+++++|+|+|++++|++
T Consensus         8 l~~~~~~l~l~~~~~a~~~~~~~~~~~~~~~~~~-~~C~~~~l~a~ep~~ri~se~G~~E~~~~~~~q~~caGv~~~R~~   86 (493)
T PLN00212          8 LSICFCVLLLCHGSMAQLFSQSTNPWQSPRQGSF-RECRFDRLQAFEPLRKVRSEAGVTEYFDEKNEQFQCTGVFVIRRV   86 (493)
T ss_pred             HHHHHHHHHHHhhHhhhhcccccccccccccccC-CcccccccccCCCchhhcccCceeeecCCCChhhcccceEEEEEE
Confidence            5678999999999999531       11 12  5 899999999999999999999999999999999999999999999


Q ss_pred             ecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCC--CCCccCCcccccccceeeeeccCcEEEeCC
Q 046186           74 IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG--GFGESAGRSQQDSHQKIRRFRQGDIFALPA  151 (436)
Q Consensus        74 i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~--~~~~~~~~~~~d~~~k~~~l~~GDv~~iPa  151 (436)
                      |+|+||++||||++++++||++|    +|++|+|+|||||||++.+++  .+++++++++.|.|||+++|++||||+||+
T Consensus        87 i~p~gL~lP~y~na~~liyV~qG----~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPa  162 (493)
T PLN00212         87 IEPQGLLLPRYSNTPGLVYIIQG----RGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPA  162 (493)
T ss_pred             ecCCcccCccccCCCeEEEEEeC----eEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECC
Confidence            99999999999999999999999    999999999999999876553  123335677889999999999999999999


Q ss_pred             CCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCC
Q 046186          152 GVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVD  231 (436)
Q Consensus       152 G~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~  231 (436)
                      |++||+||+||+++++|+++|++|+.||||+.++.|||||+++++++++++   ++++..+.|||+||++++||+||||+
T Consensus       163 G~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~---~~~~~~~~nifsGF~~e~La~Afnv~  239 (493)
T PLN00212        163 GVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGR---SIEQHSGQNIFSGFSTELLSEALGIN  239 (493)
T ss_pred             CCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccc---cccccccCchhhcCCHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999998653332111   11122368999999999999999999


Q ss_pred             HHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccc------hhhhhhcccccCCCCCCcccceeeecccccCCC
Q 046186          232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEED------SSEYERSRGRYGGDNGVEETMCTMKLRENIGDP  305 (436)
Q Consensus       232 ~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~------~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~  305 (436)
                      .++++||++++|+||.||+|++++++++|+...++++.++.      +.++.+++...+..||+||++|+||+++||++|
T Consensus       240 ~e~~~klq~~~d~rG~IVrv~~~l~~~~P~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p  319 (493)
T PLN00212        240 AQVAKRLQSQNDQRGEIIRVKNGLQLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDENFCTIKVRLNIENP  319 (493)
T ss_pred             HHHHHHHhccccCCccEEEECCCcccCCCchhhhhHHHHhhhhcccccchhhhccccccCCCCccccccccccccccCCc
Confidence            99999999999999999999999999999754322111110      111111122234569999999999999999999


Q ss_pred             CCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecC
Q 046186          306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRR  385 (436)
Q Consensus       306 ~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~  385 (436)
                      +++|+|+|.+|+++++++.+||+|++|+||+++++|++|||++|||||||++|+||++|+|+|+||+++|+++|+++|++
T Consensus       320 ~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~  399 (493)
T PLN00212        320 SRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRP  399 (493)
T ss_pred             cccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          386 GQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       386 Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      |||||||+||+|++.|++++|+|++|++++++..++|||++|||++||.|
T Consensus       400 GdvfVVPqg~~v~~~A~~egfe~v~F~tna~~~~s~laG~~Sv~~alp~e  449 (493)
T PLN00212        400 GQLLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSIFRALPVD  449 (493)
T ss_pred             CCEEEECCCCeEEEeecCCceEEEEeecCCCccccccccHHHHHHhCCHH
Confidence            99999999999999999999999999999999999999999999999964

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=100.00  E-value=4.5e-41  Score=343.57  Aligned_cols=292  Identities=17%  Similarity=0.203  Sum_probs=227.8

Q ss_pred             CCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCcc
Q 046186           48 EAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES  126 (436)
Q Consensus        48 e~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~  126 (436)
                      ++|.+...+ .++|.++.  +++++++|.||++..||||.+.|++||++|    +.++++++++.               
T Consensus        49 ~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G----~~~v~~~d~~g---------------  107 (367)
T TIGR03404        49 NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHKEAEWAYVLYG----SCRITAVDENG---------------  107 (367)
T ss_pred             cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCCCceEEEEEee----EEEEEEEcCCC---------------
Confidence            688776655 56798865  799999999999999999998899999999    99999986420               


Q ss_pred             CCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhc
Q 046186          127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERF  206 (436)
Q Consensus       127 ~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~  206 (436)
                              ......|++||+++||+|.+|++.|.+ +++.++++|+.++...+     ..+.+                 
T Consensus       108 --------~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~-----~~~~~-----------------  156 (367)
T TIGR03404       108 --------RNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSED-----GTFLV-----------------  156 (367)
T ss_pred             --------cEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCc-----ceeeH-----------------
Confidence                    111347999999999999999999985 56788888987664321     24444                 


Q ss_pred             ccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCC
Q 046186          207 GGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGD  286 (436)
Q Consensus       207 ~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (436)
                            .++|..+|++||+++|+++.+++++|+..+.   +|+...-      |....         ++..  .    ..
T Consensus       157 ------~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~---~~~~~~~------~~~~~---------~~~~--~----~~  206 (367)
T TIGR03404       157 ------TDWLAHTPKDVLAKNFGVPESAFDNLPLKEL---YIFPGTV------PGPLD---------QEAV--T----GP  206 (367)
T ss_pred             ------HHHHHhCCHHHHHHHhCCCHHHHHhccccCc---eEEecCC------CCccc---------cccC--c----CC
Confidence                  3678789999999999999999999998776   7875421      21111         0000  0    01


Q ss_pred             CCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeE
Q 046186          287 NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSC  366 (436)
Q Consensus       287 ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~g  366 (436)
                      .|.-    ...+++++.+  .++ +...+|+++.+++.+||+++  ++|++.++|.||+|++||||++++||.||++|++
T Consensus       207 ~~~~----~~~~~~~~~~--~~p-~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~  277 (367)
T TIGR03404       207 AGEV----PGPFTYHLSE--QKP-KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQA  277 (367)
T ss_pred             CCCC----CccEEEEhhh--CCc-eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEE
Confidence            2211    1123455553  333 66789999999999999999  8999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCCCccccccccccccccCC
Q 046186          367 HVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGR  434 (436)
Q Consensus       367 rv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~  434 (436)
                      +++|++++|+. ...+|++||+++||+|++|++ |.|+++++||++++++.+...-|+   ..+..+|.
T Consensus       278 ~~~v~d~~g~~-~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~---~~l~~~p~  342 (367)
T TIGR03404       278 RMTVFAAGGNA-RTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLN---QWLALTPP  342 (367)
T ss_pred             EEEEEecCCcE-EEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHH---HHHhhCCH
Confidence            99999998763 345599999999999999987 899999999999999877544443   55555654

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.93  E-value=2.1e-25  Score=199.89  Aligned_cols=141  Identities=33%  Similarity=0.593  Sum_probs=117.8

Q ss_pred             ccccCCCceeecCCcEEEEeCC-CCc-cccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCC
Q 046186           36 LEALEPNNRVECEAGVVETWDP-GHE-QFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPE  113 (436)
Q Consensus        36 l~a~eP~~~~~se~G~~e~~~~-~~p-~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e  113 (436)
                      +++.+|..++++++|.++.|+. ++| .+.+.++++.+.+|+||+|++||||++++|+||++|    +|+++++.|+|+.
T Consensus         1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G----~~~~~~v~~~~~~   76 (144)
T PF00190_consen    1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEG----RGRVGVVGPGGPQ   76 (144)
T ss_dssp             EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEES----EEEEEEEETTCSS
T ss_pred             CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEeeeeEEeeeecc----ceEEEEEecCCcc
Confidence            4788999999999999999996 467 566778999999999999999999999999999999    9999999997642


Q ss_pred             cccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCC
Q 046186          114 TYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP  193 (436)
Q Consensus       114 t~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~  193 (436)
                                     .+..+.++++ +|++|||++||+|++||++|.+|++...+.+|+++++.|               
T Consensus        77 ---------------~~~~~~~~~v-~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~---------------  125 (144)
T PF00190_consen   77 ---------------EEFRDFSQKV-RLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN---------------  125 (144)
T ss_dssp             ---------------SEEEEEEEEE-EEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG---------------
T ss_pred             ---------------ccceeeecee-eeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc---------------
Confidence                           1112234556 799999999999999999999977788888888877643               


Q ss_pred             hhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHH
Q 046186          194 HQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLV  235 (436)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v  235 (436)
                                           .   +|+++|+++|+++.+++
T Consensus       126 ---------------------~---l~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen  126 ---------------------Q---LPPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             ---------------------E---SSHHHHHHHEESSHHHH
T ss_pred             ---------------------c---CCcHHHHHhcCCCcCcC
Confidence                                 1   89999999999998875

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.88  E-value=5.5e-22  Score=177.70  Aligned_cols=116  Identities=26%  Similarity=0.405  Sum_probs=94.9

Q ss_pred             cccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEE-EEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC--
Q 046186          300 ENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAER-GLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR--  376 (436)
Q Consensus       300 ~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~-v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~--  376 (436)
                      +|+.+  ..+++++.+|+++.+++.+||+|..+...+.. +.|+||||++|||| +|++|.||++|+++++++++++.  
T Consensus         1 fn~~~--~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~   77 (144)
T PF00190_consen    1 FNLRE--PRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQE   77 (144)
T ss_dssp             EETCS--SSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSS
T ss_pred             CCCCC--CCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccc
Confidence            46664  34478999999999999999987766666555 55599999999999 99999999999999999999862  


Q ss_pred             --eEEEEE--ecCccEEEEcCCCEEEE-EeC-CCcEEEEEEEecCCCC
Q 046186          377 --SVYDGE--VRRGQIMVVPQNFAVVK-RAG-GAEFEWISFKTNDNAM  418 (436)
Q Consensus       377 --~~~~~~--l~~Gdv~vVP~g~~h~~-~ag-~e~~~~l~f~~s~~p~  418 (436)
                        +.+..+  |++||||+||+|++|++ |.+ ++.+.++.|.+++.+.
T Consensus        78 ~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~  125 (144)
T PF00190_consen   78 EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN  125 (144)
T ss_dssp             EEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred             cceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence              455665  99999999999999999 455 5778888888887754

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>smart00835 Cupin_1 Cupin

Probab=99.87  E-value=3.2e-21  Score=173.16  Aligned_cols=142  Identities=29%  Similarity=0.538  Sum_probs=122.6

Q ss_pred             CCCceeecCCcEEEEeCCC-CccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccC
Q 046186           40 EPNNRVECEAGVVETWDPG-HEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQS  117 (436)
Q Consensus        40 eP~~~~~se~G~~e~~~~~-~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~  117 (436)
                      +|.+.+++++|.+++|+.. .|.+++.++.+.+++|.||+...||||+ +.+++||++|    ++.+.+..+++.     
T Consensus         2 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G----~~~~~~~~~~~~-----   72 (146)
T smart00835        2 EPRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRG----EGRVGVVDPNGN-----   72 (146)
T ss_pred             CccccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeC----eEEEEEEeCCCC-----
Confidence            3445699999999999974 5999999999999999999999999997 8999999999    999987654221     


Q ss_pred             CCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhh
Q 046186          118 PQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEF  197 (436)
Q Consensus       118 ~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~  197 (436)
                                       .+..+.+++||+++||+|++||+.|.+++++++++ +++.++.       +.||++|.     
T Consensus        73 -----------------~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~-~~~~~~~-------~~~~~~~~-----  122 (146)
T smart00835       73 -----------------KVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVA-FNTNDPN-------RRFFLAGR-----  122 (146)
T ss_pred             -----------------eEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEE-EecCCCC-------ceeEeecc-----
Confidence                             23468999999999999999999999999999985 6655542       46888886     


Q ss_pred             hHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHH
Q 046186          198 QQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLV  235 (436)
Q Consensus       198 ~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v  235 (436)
                                     +++|++|++++|+++|+++++++
T Consensus       123 ---------------~~~~~~~~~~~~~~~~~~~~~~~  145 (146)
T smart00835      123 ---------------NSVLRGLPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             ---------------cchhhcCCHHHHHHHhCcChHHc
Confidence                           69999999999999999999876

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PLN00212 glutelin; Provisional

Probab=99.85  E-value=1.4e-20  Score=197.71  Aligned_cols=162  Identities=20%  Similarity=0.302  Sum_probs=133.8

Q ss_pred             CCCccc-cccccCCC--ceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEPN--NRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      +.|.++ +.+..+|.  ..+...+|.+...+. ++|.|+..++++.++.|.||||++||||+ |++++||++|    +|+
T Consensus       306 t~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG----~g~  381 (493)
T PLN00212        306 NFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQG----RAR  381 (493)
T ss_pred             cccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeec----ceE
Confidence            569887 66666665  578899999877764 78999999999999999999999999998 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRN  183 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~  183 (436)
                      +++|++..                 .+.     -..+|++||||+||+|++|.... +++.+.+++ |.++...      
T Consensus       382 vqvV~~~g-----------------~~v-----f~~~L~~GdvfVVPqg~~v~~~A-~~egfe~v~-F~tna~~------  431 (493)
T PLN00212        382 VQVVSNNG-----------------KTV-----FNGVLRPGQLLIIPQHYAVLKKA-EREGCQYIA-FKTNANA------  431 (493)
T ss_pred             EEEEcCCC-----------------CEE-----EEEEEcCCCEEEECCCCeEEEee-cCCceEEEE-eecCCCc------
Confidence            99997631                 111     13699999999999999998765 467788887 4444422      


Q ss_pred             CceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCc
Q 046186          184 PRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYR  245 (436)
Q Consensus       184 ~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~r  245 (436)
                       ...+|||.                    .++|+++|.+||++||+++++++++|+.++.+.
T Consensus       432 -~~s~laG~--------------------~Sv~~alp~eVla~Af~is~eea~~lk~n~~~e  472 (493)
T PLN00212        432 -MVSHIAGK--------------------NSIFRALPVDVIANAYRISREEARRLKNNRGDE  472 (493)
T ss_pred             -cccccccH--------------------HHHHHhCCHHHHHHHcCCCHHHHHHHHhcccCc
Confidence             24567887                    799999999999999999999999999876433

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.81  E-value=3.1e-19  Score=182.96  Aligned_cols=145  Identities=17%  Similarity=0.293  Sum_probs=123.5

Q ss_pred             cccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCC
Q 046186           35 NLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYP  112 (436)
Q Consensus        35 ~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~  112 (436)
                      ++...+|   +.+.+|.++..+. ++|.++  ++++++++|+||++..||||+ ++||+||++|    +++++++++.  
T Consensus       217 ~~~~~~p---~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G----~~~~~v~d~~--  285 (367)
T TIGR03404       217 HLSEQKP---KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQG----QARMTVFAAG--  285 (367)
T ss_pred             EhhhCCc---eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEE----EEEEEEEecC--
Confidence            4555555   6678999998885 577654  599999999999999999999 9999999999    9999987652  


Q ss_pred             CcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCC
Q 046186          113 ETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGN  192 (436)
Q Consensus       113 et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~  192 (436)
                                           ...++..|++||+++||+|..|++.|.|+++++++++|++..+.        .+-|   
T Consensus       286 ---------------------g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~--------~i~l---  333 (367)
T TIGR03404       286 ---------------------GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFA--------DVSL---  333 (367)
T ss_pred             ---------------------CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCc--------eeEH---
Confidence                                 12346899999999999999999999999999999999875543        3334   


Q ss_pred             ChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcC
Q 046186          193 PHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEK  242 (436)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~  242 (436)
                                          .+||+.+|++||+++|+++.+++++|++.+
T Consensus       334 --------------------~~~l~~~p~~vl~~~~~~~~~~~~~l~~~~  363 (367)
T TIGR03404       334 --------------------NQWLALTPPQLVAAHLNLDDEVIDSLKKEK  363 (367)
T ss_pred             --------------------HHHHhhCCHHHHHHHhCcCHHHHHhccccC
Confidence                                489999999999999999999999998654

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>smart00835 Cupin_1 Cupin

Probab=99.79  E-value=1.8e-18  Score=155.28  Aligned_cols=126  Identities=33%  Similarity=0.580  Sum_probs=115.5

Q ss_pred             cccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEE
Q 046186          310 IYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIM  389 (436)
Q Consensus       310 ~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~  389 (436)
                      ++++.+|+++.+++.++|.++..++++..+.+.||++..||||+++.|+.||++|++.+.+.+..|+......+++||++
T Consensus         6 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~   85 (146)
T smart00835        6 DFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVF   85 (146)
T ss_pred             cccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEE
Confidence            58999999999999999999999999999999999999999999999999999999999999987777788889999999


Q ss_pred             EEcCCCEEEE-EeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          390 VVPQNFAVVK-RAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       390 vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      +||++.+|.. +.+++++.+++|.+.+.+...+++|..+++.+|+.+
T Consensus        86 ~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (146)
T smart00835       86 VVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRGLPPE  132 (146)
T ss_pred             EECCCCEEEEEcCCCCCEEEEEEecCCCCceeEeecccchhhcCCHH
Confidence            9999999987 677899999988776655677899999999999853

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.70  E-value=1.6e-16  Score=149.07  Aligned_cols=161  Identities=16%  Similarity=0.166  Sum_probs=121.6

Q ss_pred             CHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecc
Q 046186          220 DTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLR  299 (436)
Q Consensus       220 ~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~  299 (436)
                      +..++++.|+++.++++.+..++.   +|.+-+..    .+-..       +++..+.         .+-.|.    -+.
T Consensus         2 ~~~~~~~~~~vd~~~~~~~p~~~~---~i~~~~~~----~~l~~-------d~~~~~~---------~~~~~~----~~~   54 (209)
T COG2140           2 PKLFEPKNFGVDVRTGKLLPLKQV---YIKRGSDP----GGLYA-------DEDAYSM---------LRKKED----DFV   54 (209)
T ss_pred             CceeccccccchhhhhhcCCccce---eEEeccCC----ccccc-------CHHHHHH---------hcCCCC----ceE
Confidence            456788999999999988887765   67665421    11100       0111111         110111    234


Q ss_pred             cccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcE--EEEEEeeeEEEEEEeCCCCe
Q 046186          300 ENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHS--IMYAISGSCHVQVVDSYGRS  377 (436)
Q Consensus       300 ~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~e--i~yV~~G~grv~vv~~~G~~  377 (436)
                      |.+..  ..+.++  +|.+....+..+|..     +...+.+++|+|++.||||+|+|  |.||++|+|++.+.+++|+.
T Consensus        55 yel~~--~~~~~~--~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~  125 (209)
T COG2140          55 YELLE--SEPGER--GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEA  125 (209)
T ss_pred             EEeec--cccccc--CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcE
Confidence            55553  333333  999999999999977     67889999999999999999999  99999999999999999884


Q ss_pred             EEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCC
Q 046186          378 VYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNA  417 (436)
Q Consensus       378 ~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p  417 (436)
                       ....+++||++|||.+|.|++ |+|+++|.|+..+..+..
T Consensus       126 -~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~  165 (209)
T COG2140         126 -RVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAG  165 (209)
T ss_pred             -EEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCC
Confidence             556699999999999999997 999999999998877764

>PRK11171 hypothetical protein; Provisional

Probab=99.50  E-value=3.2e-12  Score=126.08  Aligned_cols=200  Identities=13%  Similarity=0.118  Sum_probs=134.9

Q ss_pred             ccceEEEEEEecCCceecCeeec--CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      ..++.+.+++|.||+-...|+|.  ..|++||++|    ++.+.+                            ..+.+.|
T Consensus        58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG----~l~v~~----------------------------~g~~~~L  105 (266)
T PRK11171         58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEG----EITLTL----------------------------EGKTHAL  105 (266)
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeC----EEEEEE----------------------------CCEEEEE
Confidence            46789999999999976666664  5899999999    888874                            1347899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCH
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDT  221 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~  221 (436)
                      ++||.+++|++.+|.+.|.++++++++++.....+.                                   .+..  .| 
T Consensus       106 ~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~y~~~-----------------------------------~~~~--~p-  147 (266)
T PRK11171        106 SEGGYAYLPPGSDWTLRNAGAEDARFHWIRKRYEPV-----------------------------------EGHE--AP-  147 (266)
T ss_pred             CCCCEEEECCCCCEEEEECCCCCEEEEEEEcCCeEc-----------------------------------CCCC--CC-
Confidence            999999999999999999999999998875432211                                   0110  01 


Q ss_pred             HHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccc
Q 046186          222 RILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLREN  301 (436)
Q Consensus       222 ~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~N  301 (436)
                                           +   .|+.-..++.   +...                .    ...|.   .  .+. ..
T Consensus       148 ---------------------~---~~~~~~~d~~---~~~~----------------~----g~~g~---~--~~~-~~  174 (266)
T PRK11171        148 ---------------------E---AFVGNESDIE---PIPM----------------P----GTDGV---W--ATT-RL  174 (266)
T ss_pred             ---------------------C---eEecchhccc---cccc----------------C----CCCCe---E--EEE-Ee
Confidence                                 0   1211111110   0000                0    00110   0  000 01


Q ss_pred             cCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceeccc-ccCCCcEEEEEEeeeEEEEEEeCCCCeEEE
Q 046186          302 IGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPH-WNLNAHSIMYAISGSCHVQVVDSYGRSVYD  380 (436)
Q Consensus       302 i~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PH-wh~~A~ei~yV~~G~grv~vv~~~G~~~~~  380 (436)
                      |.                   +.+.    ..++.+..+.|.||+-...| +| ...|.+||++|++.+.+ +  |+   .
T Consensus       175 ~~-------------------p~~~----~~~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~-~--~~---~  224 (266)
T PRK11171        175 VD-------------------PEDL----RFDMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL-N--ND---W  224 (266)
T ss_pred             eC-------------------chhc----CCCcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE-C--CE---E
Confidence            11                   1110    12467788999999999985 55 45599999999999975 2  22   3


Q ss_pred             EEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCC
Q 046186          381 GEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDN  416 (436)
Q Consensus       381 ~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~  416 (436)
                      ..|.+||++++|.+-+|.. |.|++.+.|+.++.-.+
T Consensus       225 ~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~nr  261 (266)
T PRK11171        225 VEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVNR  261 (266)
T ss_pred             EEeCCCCEEEECCCCCEEEECCCCCcEEEEEEccccc
Confidence            4599999999999999987 88999999999985443

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.47  E-value=1.3e-11  Score=121.36  Aligned_cols=197  Identities=12%  Similarity=0.112  Sum_probs=131.4

Q ss_pred             cceEEEEEEecCCce-ecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           65 AGVAVVRHTIRQKGL-LLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l-~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ..+.+..+++.||+- ..+++|+ ..+++||++|    +..+.+                            ..+.+.|+
T Consensus        56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G----~l~v~~----------------------------~g~~~~L~  103 (260)
T TIGR03214        56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISG----EVNVTA----------------------------EGETHELR  103 (260)
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeC----EEEEEE----------------------------CCEEEEEC
Confidence            578999999999875 4566676 4899999999    888764                            13468999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHH
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTR  222 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~  222 (436)
                      +||.+++|+|.+|.+.|.++++++++++-....+.                                   .++   .   
T Consensus       104 ~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y~~~-----------------------------------~g~---~---  142 (260)
T TIGR03214       104 EGGYAYLPPGSKWTLANAQAEDARFFLYKKRYQPV-----------------------------------EGL---H---  142 (260)
T ss_pred             CCCEEEECCCCCEEEEECCCCCEEEEEEEeeeEEc-----------------------------------CCC---C---
Confidence            99999999999999999999999988754322110                                   111   0   


Q ss_pred             HHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeeccccc
Q 046186          223 ILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENI  302 (436)
Q Consensus       223 vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni  302 (436)
                                        ..+   .|+.-..++   .+..                 .      .|              
T Consensus       143 ------------------~~~---~vvg~~~dv---~~~~-----------------~------~g--------------  161 (260)
T TIGR03214       143 ------------------APE---LVVGNEKDI---EPEP-----------------Y------EG--------------  161 (260)
T ss_pred             ------------------CCC---eeecCHHHC---Cccc-----------------c------CC--------------
Confidence                              000   111100010   0000                 0      00              


Q ss_pred             CCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecc-cccCCCcEEEEEEeeeEEEEEEeCCCCeEEEE
Q 046186          303 GDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVP-HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDG  381 (436)
Q Consensus       303 ~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~P-Hwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~  381 (436)
                                ..+.+++.+-++++.   . ++.+..+.|.||+-... |.|... +..||++|+|.+.+   +|+   ..
T Consensus       162 ----------~~~~~~~~llp~~~~---~-~~~~~~~~~~PG~~~~~~~~H~~e-h~~yiL~G~G~~~~---~g~---~~  220 (260)
T TIGR03214       162 ----------MDDVILTTLLPKELA---F-DMNVHILSFEPGASHPYIETHVME-HGLYVLEGKGVYNL---DNN---WV  220 (260)
T ss_pred             ----------CCcEEEEEeCchhcC---C-CcEEEEEEECCCcccCCcccccce-eEEEEEeceEEEEE---CCE---EE
Confidence                      001111111111111   1 56777799999999985 677644 55699999999964   233   24


Q ss_pred             EecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCC
Q 046186          382 EVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDN  416 (436)
Q Consensus       382 ~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~  416 (436)
                      .|.+||+++||.+.+|+. |.|+++|.||..+.--+
T Consensus       221 ~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd~nr  256 (260)
T TIGR03214       221 PVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKDMNR  256 (260)
T ss_pred             EecCCCEEEECCCCCEEEEecCCCcEEEEEEccccC
Confidence            599999999999999998 88899999999985433

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.26  E-value=3.7e-11  Score=113.16  Aligned_cols=140  Identities=18%  Similarity=0.284  Sum_probs=107.0

Q ss_pred             cccccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCc--eEEEEecccceEEEEEeeC
Q 046186           33 INNLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQ--LVYILQAYTYRRGSHGDPF  108 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~e--i~yV~~G~~~~~g~~g~v~  108 (436)
                      .+.|...+|..+    +|.+...+. .+|.-     +...+.++||++...|||+ ++|  |+||++|    +|.+-+-.
T Consensus        54 ~yel~~~~~~~~----~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G----~g~m~v~~  120 (209)
T COG2140          54 VYELLESEPGER----GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKG----EGRMLVQK  120 (209)
T ss_pred             EEEeeccccccc----CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEec----cEEEEEEc
Confidence            346666667532    888877664 34432     6677899999999999999 888  9999999    99998755


Q ss_pred             CCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceee
Q 046186          109 PGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFH  188 (436)
Q Consensus       109 pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~  188 (436)
                      ++                       .+-++..+++||+++||++..|++.|+|+++|+++.++..+...        .+.
T Consensus       121 ~~-----------------------G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~--------~y~  169 (209)
T COG2140         121 PE-----------------------GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQ--------DYD  169 (209)
T ss_pred             CC-----------------------CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCc--------eee
Confidence            42                       12347899999999999999999999999999999888643322        233


Q ss_pred             ecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHh
Q 046186          189 LAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLR  239 (436)
Q Consensus       189 laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~  239 (436)
                      +                       ..++.+.+..+++..|+.+....+.+.
T Consensus       170 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~D~p~  197 (209)
T COG2140         170 L-----------------------IAWLGGMPPVLVENGLNKNPKYVDVPR  197 (209)
T ss_pred             e-----------------------eehhccCCceeeccccccCcccccCcc
Confidence            2                       467788888899988887766655543

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.11  E-value=4.8e-10  Score=87.26  Aligned_cols=69  Identities=23%  Similarity=0.383  Sum_probs=61.6

Q ss_pred             EEEecCCceecCeeecCC-ceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEe
Q 046186           71 RHTIRQKGLLLPQFSNSP-QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFAL  149 (436)
Q Consensus        71 r~~i~pg~l~~Ph~h~a~-ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~i  149 (436)
                      ++++.||+...+|+|+.. +++||++|    ++.+.+ .                           .+...|++||.+++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G----~~~~~~-~---------------------------~~~~~l~~Gd~~~i   49 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSG----EGTLTV-D---------------------------GERVELKPGDAIYI   49 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEES----EEEEEE-T---------------------------TEEEEEETTEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEEC----CEEEEE-c---------------------------cEEeEccCCEEEEE
Confidence            578999999999999966 99999999    988873 1                           23789999999999


Q ss_pred             CCCCeEEEeccCCCcEEEEEEE
Q 046186          150 PAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       150 PaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      |+|..|.+.|.++++++++.++
T Consensus        50 ~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen   50 PPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             ETTSEEEEEEESSSEEEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEEC
Confidence            9999999999999999998875

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.10  E-value=8.7e-10  Score=96.98  Aligned_cols=80  Identities=19%  Similarity=0.335  Sum_probs=69.8

Q ss_pred             ccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeee
Q 046186           62 FQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRR  140 (436)
Q Consensus        62 l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~  140 (436)
                      .....+.+..++++||+....|.|| ..+.+||++|    ++++.+-                            ++.+.
T Consensus        38 ~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G----~~~~~~~----------------------------g~~~~   85 (131)
T COG1917          38 NEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEG----EGTVQLE----------------------------GEKKE   85 (131)
T ss_pred             CCCceEEEEEEEECCCcccccccCCCcceEEEEEec----EEEEEec----------------------------CCceE
Confidence            3456788999999999999999999 9999999999    9999852                            23689


Q ss_pred             eccCcEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          141 FRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       141 l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      +++||++++|+|+.||+.|.+++..+.++++..
T Consensus        86 l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~  118 (131)
T COG1917          86 LKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL  118 (131)
T ss_pred             ecCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence            999999999999999999999887677777665

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.6e-09  Score=95.42  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=69.4

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ...+++.++.+.||+-..+|.|. .+|+.||++|    +|.+.+                            ..+...|+
T Consensus        33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G----~g~v~~----------------------------~~~~~~v~   80 (127)
T COG0662          33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEG----TGKVTI----------------------------GGEEVEVK   80 (127)
T ss_pred             CCcEEEEEEEECCCcccCcccccCcceEEEEEee----EEEEEE----------------------------CCEEEEec
Confidence            35789999999999987777766 8999999999    999985                            13578999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      +||+++||+|++|++.|.|..+|+++++-....
T Consensus        81 ~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~  113 (127)
T COG0662          81 AGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPY  113 (127)
T ss_pred             CCCEEEECCCCcEEEEcCCCcceEEEEEecCCc
Confidence            999999999999999999999999998765444

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=99.06  E-value=2e-09  Score=109.19  Aligned_cols=79  Identities=16%  Similarity=0.167  Sum_probs=67.6

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      .+.+....|.||....||=|++..+.||++|    +|...+|.                           .+...+++||
T Consensus        80 tl~a~~q~l~pGe~~~~HRht~sAl~~vveG----~G~~t~V~---------------------------g~~~~~~~gD  128 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRHTQSALRFIVEG----KGAFTAVD---------------------------GERTTMHPGD  128 (335)
T ss_pred             hHHhhhEEeCCCCCCCccccccceEEEEEEc----CceEEEEC---------------------------CEEEeeeCCC
Confidence            4567778999999999999999999999999    99666563                           2358999999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      +|++|.+.-|-..|.||++++++.++|..-
T Consensus       129 ~~~tP~w~wH~H~n~~d~~~~wld~lD~Pl  158 (335)
T TIGR02272       129 FIITPSWTWHDHGNPGDEPMIWLDGLDIPL  158 (335)
T ss_pred             EEEeCCCeeEecccCCCCcEEEEecCCHHH
Confidence            999999999999999999988877777543

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.95  E-value=1.1e-08  Score=96.45  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=74.3

Q ss_pred             ccccccceEEEEEecCCce------ecccccCCCc--EEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186          328 VLRWIQLSAERGLLHRNAM------MVPHWNLNAH--SIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK  399 (436)
Q Consensus       328 ~L~~l~ls~~~v~L~~gam------~~PHwh~~A~--ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~  399 (436)
                      .++.-+|.+..+.|.||.+      ..+|||++++  |+.||++|+|.+.+-+.+|.. ....+++||+++||.|+.|.+
T Consensus        62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~-~~~~v~pGd~v~IPpg~~H~~  140 (191)
T PRK04190         62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA-RWIEMEPGTVVYVPPYWAHRS  140 (191)
T ss_pred             CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE-EEEEECCCCEEEECCCCcEEe
Confidence            4556689999999999996      6679999765  999999999999998877653 445699999999999999976


Q ss_pred             -EeCCCcEEEEEEEecC
Q 046186          400 -RAGGAEFEWISFKTND  415 (436)
Q Consensus       400 -~ag~e~~~~l~f~~s~  415 (436)
                       |+|+++|+|+++...+
T Consensus       141 iN~G~epl~fl~v~p~~  157 (191)
T PRK04190        141 VNTGDEPLVFLACYPAD  157 (191)
T ss_pred             EECCCCCEEEEEEEcCC
Confidence             9999999999987654

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.95  E-value=1.1e-08  Score=90.13  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=74.8

Q ss_pred             eecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCC
Q 046186           45 VECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFG  124 (436)
Q Consensus        45 ~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~  124 (436)
                      +.+..|.++.+....+   ..++++.+.+|+||+-...|+|+..|++||++|    ++.+..+.                
T Consensus        16 ~~~~~~~~krll~~~~---~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G----~~~~~~i~----------------   72 (125)
T PRK13290         16 VKAGNWTSRRLLLKDD---GMGFSFHETTIYAGTETHLHYKNHLEAVYCIEG----EGEVEDLA----------------   72 (125)
T ss_pred             eecCCceEEEEEEecC---CCCEEEEEEEECCCCcccceeCCCEEEEEEEeC----EEEEEEcC----------------
Confidence            4556666655543222   356899999999999888899886689999999    99887221                


Q ss_pred             ccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          125 ESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       125 ~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                                ..+.+.|++||++++|++.+|++.|.  +++++++++...
T Consensus        73 ----------~g~~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~tP~  110 (125)
T PRK13290         73 ----------TGEVHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFNPP  110 (125)
T ss_pred             ----------CCEEEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEECCC
Confidence                      13479999999999999999999997  789999988744

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.90  E-value=2.2e-08  Score=94.27  Aligned_cols=96  Identities=16%  Similarity=0.183  Sum_probs=75.3

Q ss_pred             EEEEeCCCCccccccceEEEEEEecCCce------ecCeeec---CCceEEEEecccceEEEEEeeCCCCCCcccCCCCC
Q 046186           51 VVETWDPGHEQFQCAGVAVVRHTIRQKGL------LLPQFSN---SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG  121 (436)
Q Consensus        51 ~~e~~~~~~p~l~~~gv~~~r~~i~pg~l------~~Ph~h~---a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~  121 (436)
                      .++++. ..+.+...++.+...+|.||.+      ..+|||+   .+|+.||++|    +|.+-+-.+.           
T Consensus        53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG----~g~~~l~~~~-----------  116 (191)
T PRK04190         53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKG----KGLMLLQDPE-----------  116 (191)
T ss_pred             EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeC----EEEEEEecCC-----------
Confidence            345543 2334556789999999999996      5679996   4599999999    9998763221           


Q ss_pred             CCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          122 GFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       122 ~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                                  ...+...+++||+++||+|++|.+.|.|+++|+++++....
T Consensus       117 ------------G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p~~  157 (191)
T PRK04190        117 ------------GEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYPAD  157 (191)
T ss_pred             ------------CcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEcCC
Confidence                        01236899999999999999999999999999999987644

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=98.89  E-value=9.2e-09  Score=80.00  Aligned_cols=69  Identities=19%  Similarity=0.341  Sum_probs=60.6

Q ss_pred             EEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEE
Q 046186          338 RGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFK  412 (436)
Q Consensus       338 ~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~  412 (436)
                      .+.|.||+...+|+|+...++.||++|++.+. ++  |+   ...|++||.++||++-+|.. |.+++.+.|+.++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~--~~---~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD--GE---RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET--TE---EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec--cE---EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            57899999999999999889999999999999 55  23   34599999999999999987 8888999998864

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.79  E-value=4.8e-08  Score=96.21  Aligned_cols=272  Identities=17%  Similarity=0.183  Sum_probs=161.4

Q ss_pred             CCceeecCCcEEEEeCCCCccccccc-----eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcc
Q 046186           41 PNNRVECEAGVVETWDPGHEQFQCAG-----VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETY  115 (436)
Q Consensus        41 P~~~~~se~G~~e~~~~~~p~l~~~g-----v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~  115 (436)
                      --..+..+.|.-++.-=++|.|+...     +-+..--|-||-..+.|-|+...+-||++|    +|...+|+-      
T Consensus        61 sgeli~~~~a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG----~Ga~T~VdG------  130 (351)
T COG3435          61 SGELISAREAVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEG----KGAYTVVDG------  130 (351)
T ss_pred             hhhccCcccceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEec----cceeEeecC------
Confidence            33456677777776655667666542     224556789999999999999999999999    999988842      


Q ss_pred             cCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChh
Q 046186          116 QSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQ  195 (436)
Q Consensus       116 ~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~  195 (436)
                                           .-..+++||.+..|++.-|-..|.|+++++++--+|+.- .|+|+              
T Consensus       131 ---------------------er~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDipl-v~~l~--------------  174 (351)
T COG3435         131 ---------------------ERTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDIPL-VNSLG--------------  174 (351)
T ss_pred             ---------------------ceeeccCCCEEEccCceeccCCCCCCCceEEEcccchHH-HHhhc--------------
Confidence                                 135889999999999999999999999999887777542 22222              


Q ss_pred             hhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhh
Q 046186          196 EFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSE  275 (436)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~  275 (436)
                                       ..+|.-++++.....-..+...++              .-.+++   |-..+....+.- --.
T Consensus       175 -----------------~gFfe~~~e~~q~v~~~~~d~~ar--------------~~~~~r---P~~~r~~~~~SP-lf~  219 (351)
T COG3435         175 -----------------AGFFEEHPEEQQPVTRPEGDSLAR--------------YGPGMR---PLRHRWGKPYSP-LFN  219 (351)
T ss_pred             -----------------ccccccCchhcCcccCCCCCchhh--------------cCCCcc---ccccCCCCCCCc-ccc
Confidence                             133333444333322221111111              111111   111000000000 000


Q ss_pred             hhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCC--CCccccccceEEEEEecCCceecccccC
Q 046186          276 YERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFN--LPVLRWIQLSAERGLLHRNAMMVPHWNL  353 (436)
Q Consensus       276 ~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~--~P~L~~l~ls~~~v~L~~gam~~PHwh~  353 (436)
                      +    .|.-...-|+      ++. -+   ..+|-+  .|-.+..+|+.+  .+. -  .|.+.+-.|.||..-.+|=|.
T Consensus       220 Y----~w~~t~eAL~------~la-~~---e~~dp~--dG~~~ryvNP~TGg~~m-p--tI~a~mqlL~~Gf~~~~~r~t  280 (351)
T COG3435         220 Y----AWDRTREALE------RLA-RL---EEPDPF--DGYKMRYVNPVTGGYAM-P--TIGAFMQLLPPGFHGKAHRHT  280 (351)
T ss_pred             c----ccccHHHHHH------HHH-hc---cCCCCC--CcceEEEecCCCCCCcC-c--hHHHHHHhcCCcccCCceecc
Confidence            0    0000000000      000 00   111111  222333333221  111 1  466666678899999999986


Q ss_pred             CCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccc
Q 046186          354 NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISP  421 (436)
Q Consensus       354 ~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~  421 (436)
                      ++ .|.-|.+|+|.+.|=+    ..|+  .++||+||||.=+.|-..++++++.++||  |++|....
T Consensus       281 ~s-~iy~V~eGsg~~~Ig~----~rf~--~~~~D~fvVPsW~~~~~~~gs~da~LFsf--sD~PV~ea  339 (351)
T COG3435         281 DS-TIYHVVEGSGYTIIGG----ERFD--WSAGDIFVVPSWAWHEHVNGSEDAVLFSF--SDRPVMEA  339 (351)
T ss_pred             CC-EEEEEEecceeEEECC----EEee--ccCCCEEEccCcceeecccCCcceEEEec--CCcHHHHH
Confidence            65 6777999999988743    3355  89999999999999999888888887777  78875443

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.77  E-value=6e-08  Score=95.54  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             ceEEEEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ++.+..++++||+-... |.|...+.+||++|    +|.+.+                            ..+...|++|
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G----~G~~~~----------------------------~g~~~~V~~G  225 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEG----KGVYNL----------------------------DNNWVPVEAG  225 (260)
T ss_pred             CcEEEEEEECCCcccCCcccccceeEEEEEec----eEEEEE----------------------------CCEEEEecCC
Confidence            67888899999999885 55668899999999    999864                            2457999999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      |+++||++++||++|.|+++++++.-=|++
T Consensus       226 D~i~i~~~~~h~~~~~G~~~~~~l~ykd~n  255 (260)
T TIGR03214       226 DYIWMGAYCPQACYAGGRGEFRYLLYKDMN  255 (260)
T ss_pred             CEEEECCCCCEEEEecCCCcEEEEEEcccc
Confidence            999999999999999999999988755544

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.70  E-value=5.4e-08  Score=87.72  Aligned_cols=79  Identities=23%  Similarity=0.314  Sum_probs=66.8

Q ss_pred             cceEEEEEEecCCce-ecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           65 AGVAVVRHTIRQKGL-LLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l-~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ..+.+....++||+- .++|||. .+|++||++|    ++.+-+                            ......|+
T Consensus        40 ~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeG----E~~l~~----------------------------d~~e~~lr   87 (161)
T COG3837          40 KRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEG----EGTLRE----------------------------DGGETRLR   87 (161)
T ss_pred             hhcccceEEeCCCCccccccccccCceEEEEEcC----ceEEEE----------------------------CCeeEEec
Confidence            346677789999995 8899999 8999999999    888753                            12368999


Q ss_pred             cCcEEEeCCC--CeEEEeccCCCcEEEEEEEecCC
Q 046186          143 QGDIFALPAG--VAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       143 ~GDv~~iPaG--~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      +||++.+|||  ++|.+.|.++..++.+++-+...
T Consensus        88 pGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r~~  122 (161)
T COG3837          88 PGDSAGFPAGVGNAHHLINRSDVILRYLEVGTREP  122 (161)
T ss_pred             CCceeeccCCCcceeEEeecCCceEEEEEeccccc
Confidence            9999999999  99999999999999888766544

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.60  E-value=6.8e-07  Score=81.29  Aligned_cols=88  Identities=22%  Similarity=0.254  Sum_probs=76.4

Q ss_pred             eecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCC
Q 046186           45 VECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF  123 (436)
Q Consensus        45 ~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~  123 (436)
                      +...-|.+++++.      ..++.+.++++.||..+..|+|. ..|.-+|++|    .|.+.+                 
T Consensus        47 ~~rpWG~~~~l~~------~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G----~a~v~~-----------------   99 (151)
T PF01050_consen   47 VYRPWGSYEVLDE------GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSG----TAEVTL-----------------   99 (151)
T ss_pred             EecCCcEEEEEEc------cCCEEEEEEEEcCCCccceeeecccccEEEEEeC----eEEEEE-----------------
Confidence            3346788888774      24688999999999999999998 9999999999    999875                 


Q ss_pred             CccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          124 GESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       124 ~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                                 ..+...+++||++.||+|..|.+.|.|+.+|++|-+
T Consensus       100 -----------~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV  135 (151)
T PF01050_consen  100 -----------DDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV  135 (151)
T ss_pred             -----------CCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence                       135789999999999999999999999999999874

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.60  E-value=3.4e-07  Score=97.42  Aligned_cols=77  Identities=16%  Similarity=0.185  Sum_probs=67.3

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ..++.+.++++.||+-...|+|. ..|..||++|    ++.+.+                            ..+.+.|.
T Consensus       382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG----~~~v~i----------------------------dg~~~~L~  429 (478)
T PRK15460        382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAG----TAKVTI----------------------------DGDIKLLG  429 (478)
T ss_pred             CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEee----EEEEEE----------------------------CCEEEEec
Confidence            34688999999999976667765 7799999999    999885                            13579999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      +||.++||+|.+|++.|.|++++++|++..
T Consensus       430 ~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~  459 (478)
T PRK15460        430 ENESIYIPLGATHCLENPGKIPLDLIEVRS  459 (478)
T ss_pred             CCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence            999999999999999999999999999754

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.59  E-value=2.6e-07  Score=98.25  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=67.9

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ..++.+.++++.||+-..+|+|. ..|..||++|    ++.+.+                            ..++..|+
T Consensus       373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G----~~~v~~----------------------------dg~~~~l~  420 (468)
T TIGR01479       373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSG----TARVTI----------------------------GDETLLLT  420 (468)
T ss_pred             CCCEEEEEEEECCCCccCccccCCCceEEEEEee----EEEEEE----------------------------CCEEEEec
Confidence            34689999999999988888887 8888899999    998874                            13478999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      +||+++||+|.+|.+.|.|+++++++++..
T Consensus       421 ~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~  450 (468)
T TIGR01479       421 ENESTYIPLGVIHRLENPGKIPLELIEVQS  450 (468)
T ss_pred             CCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence            999999999999999999999999999864

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.56  E-value=7.3e-07  Score=78.61  Aligned_cols=80  Identities=14%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      ++++.++.|.||+-...|+|.. .|+.||++|++.+..++.  ..  ...|.+||.+++|.+-+|.+.+. +++++++..
T Consensus        34 ~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~--g~--~~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~v~  107 (125)
T PRK13290         34 GFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT--GE--VHPIRPGTMYALDKHDRHYLRAG-EDMRLVCVF  107 (125)
T ss_pred             CEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC--CE--EEEeCCCeEEEECCCCcEEEEcC-CCEEEEEEE
Confidence            6788999999999989999976 599999999999995531  22  34599999999999999998554 899999998


Q ss_pred             ecCCCC
Q 046186          413 TNDNAM  418 (436)
Q Consensus       413 ~s~~p~  418 (436)
                      +-.-.+
T Consensus       108 tP~~~~  113 (125)
T PRK13290        108 NPPLTG  113 (125)
T ss_pred             CCCCCC
Confidence            754444

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.56  E-value=5e-07  Score=84.26  Aligned_cols=76  Identities=11%  Similarity=0.050  Sum_probs=63.7

Q ss_pred             cceEEEEEEecCCcee-cCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           65 AGVAVVRHTIRQKGLL-LPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~-~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..+.+...++.||+-. .+|+|+..|++||++|    +..+.+                            ..+.+.|++
T Consensus       105 ~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G----~~~~~~----------------------------~~~~~~l~~  152 (185)
T PRK09943        105 RTLAMIFETYQPGTTTGERIKHQGEEIGTVLEG----EIVLTI----------------------------NGQDYHLVA  152 (185)
T ss_pred             CeeEEEEEEccCCCCcccccccCCcEEEEEEEe----EEEEEE----------------------------CCEEEEecC
Confidence            3466777889999964 4567889999999999    888864                            134689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      ||.++||++++|.+.|.++++++++++..
T Consensus       153 Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~  181 (185)
T PRK09943        153 GQSYAINTGIPHSFSNTSAGICRIISAHT  181 (185)
T ss_pred             CCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence            99999999999999999999999888754

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.55  E-value=6e-07  Score=79.06  Aligned_cols=80  Identities=16%  Similarity=0.219  Sum_probs=70.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ..++..+.+.||+-..+|.|....|+.||++|+|.|.+=+   .   ...|++||+++||+|.+|.. |.|+.+|++++.
T Consensus        35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~---~---~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei  108 (127)
T COG0662          35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG---E---EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV  108 (127)
T ss_pred             cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC---E---EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence            7788999999999999999999999999999999999753   2   34499999999999999998 889999999999


Q ss_pred             EecCCCC
Q 046186          412 KTNDNAM  418 (436)
Q Consensus       412 ~~s~~p~  418 (436)
                      .......
T Consensus       109 ~~p~~~~  115 (127)
T COG0662         109 QSPPYLG  115 (127)
T ss_pred             ecCCcCC
Confidence            8766554

>PRK11171 hypothetical protein; Provisional

Probab=98.53  E-value=8.5e-07  Score=87.71  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=66.7

Q ss_pred             ceEEEEEEecCCceecCe-eecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQ-FSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph-~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ++.+..++|+||+-+..| +|...|.+||++|    ++.+.+                            ..+.+.|++|
T Consensus       183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G----~~~~~~----------------------------~~~~~~l~~G  230 (266)
T PRK11171        183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEG----KGVYRL----------------------------NNDWVEVEAG  230 (266)
T ss_pred             CcEEEEEEECCCCEEccCcCCCceEEEEEEeC----EEEEEE----------------------------CCEEEEeCCC
Confidence            378999999999988774 6779999999999    999874                            2357899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      |++.+|++.+||+.|.|+++++++..=|++
T Consensus       231 D~i~~~~~~~h~~~N~g~~~~~yl~~k~~n  260 (266)
T PRK11171        231 DFIWMRAYCPQACYAGGPGPFRYLLYKDVN  260 (266)
T ss_pred             CEEEECCCCCEEEECCCCCcEEEEEEcccc
Confidence            999999999999999999999988765544

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.38  E-value=2.5e-06  Score=74.97  Aligned_cols=79  Identities=15%  Similarity=0.165  Sum_probs=65.3

Q ss_pred             ccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC-CCcEEE
Q 046186          330 RWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG-GAEFEW  408 (436)
Q Consensus       330 ~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag-~e~~~~  408 (436)
                      ..-.+++..+.+.||+....|.||-..+.+||++|++++++-.   .   ..++++||+++||+|-.|...+. ++.+.+
T Consensus        39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g---~---~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~  112 (131)
T COG1917          39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG---E---KKELKAGDVIIIPPGVVHGLKAVEDEPMVL  112 (131)
T ss_pred             CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC---C---ceEecCCCEEEECCCCeeeeccCCCCceeE
Confidence            3457889999999999999999996779999999999999873   2   24599999999999999998444 444677


Q ss_pred             EEEEec
Q 046186          409 ISFKTN  414 (436)
Q Consensus       409 l~f~~s  414 (436)
                      |+....
T Consensus       113 l~v~~~  118 (131)
T COG1917         113 LLVFPL  118 (131)
T ss_pred             EEEeee
Confidence            776655

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.22  E-value=1.4e-05  Score=74.82  Aligned_cols=87  Identities=16%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             cccccceEEEEEecCCc------eecccccCC------CcEEEEEEeeeEEEEEEeCCC---CeEEEEEecCccEEEEcC
Q 046186          329 LRWIQLSAERGLLHRNA------MMVPHWNLN------AHSIMYAISGSCHVQVVDSYG---RSVYDGEVRRGQIMVVPQ  393 (436)
Q Consensus       329 L~~l~ls~~~v~L~~ga------m~~PHwh~~------A~ei~yV~~G~grv~vv~~~G---~~~~~~~l~~Gdv~vVP~  393 (436)
                      |+.-+|-.....|.||-      |.--|||+.      ..|+-+|++|+|.+-+-+.+|   ..++--.+.+||+++||.
T Consensus        45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp  124 (182)
T PF06560_consen   45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP  124 (182)
T ss_dssp             -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred             ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence            44445666666777774      567799998      679999999999999999987   245566799999999999


Q ss_pred             CCEEEE-EeCCCcEEEEEEEecC
Q 046186          394 NFAVVK-RAGGAEFEWISFKTND  415 (436)
Q Consensus       394 g~~h~~-~ag~e~~~~l~f~~s~  415 (436)
                      +|+|.. |+|++.|.+.....++
T Consensus       125 ~yaH~tIN~g~~~L~~~~~~~~~  147 (182)
T PF06560_consen  125 GYAHRTINTGDEPLVFAAWVPRD  147 (182)
T ss_dssp             T-EEEEEE-SSS-EEEEEEEETT
T ss_pred             CceEEEEECCCCcEEEEEEEecC
Confidence            999986 9999999998877654

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.21  E-value=7.2e-06  Score=70.89  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=64.6

Q ss_pred             cccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           63 QCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        63 ~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      ...++-+-.++|.||+-.--|.|. -+..+||+.|    +..+=+=                     .+    -..-..+
T Consensus        42 Gas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG----~ah~w~G---------------------~r----LE~ha~~   92 (142)
T COG4101          42 GASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSG----EAHTWYG---------------------NR----LEEHAEV   92 (142)
T ss_pred             ccceeeEEEEeeCCCccccccccccccEEEEEEec----eeeeeec---------------------cc----eeeeEEe
Confidence            345677888999999999999998 7788999999    7765431                     00    0124788


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      ++||.|+||+|++|--+|..++++.++.+-.
T Consensus        93 ~pGDf~YiPpgVPHqp~N~S~ep~s~vIaRs  123 (142)
T COG4101          93 GPGDFFYIPPGVPHQPANLSTEPLSAVIARS  123 (142)
T ss_pred             cCCCeEEcCCCCCCcccccCCCCeEEEEEcc
Confidence            9999999999999999999999998776543

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.20  E-value=7.9e-06  Score=86.96  Aligned_cols=77  Identities=12%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+..+.+.||+-..+|+|+...|..||++|++.+.+=+   +   ...|++||.++||.+-+|.+ |.|++++++++.
T Consensus       375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg---~---~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v  448 (468)
T TIGR01479       375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD---E---TLLLTENESTYIPLGVIHRLENPGKIPLELIEV  448 (468)
T ss_pred             CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC---E---EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            6888899999999889999999999889999999998533   2   34599999999999999987 889999999998


Q ss_pred             EecC
Q 046186          412 KTND  415 (436)
Q Consensus       412 ~~s~  415 (436)
                      .+.+
T Consensus       449 ~~~~  452 (468)
T TIGR01479       449 QSGS  452 (468)
T ss_pred             EcCC
Confidence            7644

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.19  E-value=1.1e-05  Score=73.42  Aligned_cols=89  Identities=13%  Similarity=0.218  Sum_probs=74.2

Q ss_pred             CCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC
Q 046186          314 GAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ  393 (436)
Q Consensus       314 ~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~  393 (436)
                      .-|+...++..+       +..+-++.+.||..+++|.|...+|.-+|++|.|.+++=    ...+  .+.+||.++||+
T Consensus        50 pWG~~~~l~~~~-------~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~----~~~~--~~~~g~sv~Ip~  116 (151)
T PF01050_consen   50 PWGSYEVLDEGE-------GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD----DEEF--TLKEGDSVYIPR  116 (151)
T ss_pred             CCcEEEEEEccC-------CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC----CEEE--EEcCCCEEEECC
Confidence            446777776432       567889999999999999999999999999999999962    2333  499999999999


Q ss_pred             CCEEEE-EeCCCcEEEEEEEecC
Q 046186          394 NFAVVK-RAGGAEFEWISFKTND  415 (436)
Q Consensus       394 g~~h~~-~ag~e~~~~l~f~~s~  415 (436)
                      |-.|.+ |.|+.+|+++.+-+..
T Consensus       117 g~~H~i~n~g~~~L~~IEVq~G~  139 (151)
T PF01050_consen  117 GAKHRIENPGKTPLEIIEVQTGE  139 (151)
T ss_pred             CCEEEEECCCCcCcEEEEEecCC
Confidence            999998 7788999999987643

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.13  E-value=5.4e-06  Score=73.27  Aligned_cols=68  Identities=18%  Similarity=0.400  Sum_probs=58.0

Q ss_pred             Cceecc-cccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEec
Q 046186          344 NAMMVP-HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN  414 (436)
Q Consensus       344 gam~~P-Hwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s  414 (436)
                      |+++.= |||.+|||++.|++|++.+++=.++|..+   ++.+||+++||+|-.|+.+.++-+|..++-+--
T Consensus        52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el---~v~~GDvlliPAGvGH~rl~sS~DF~VvGaYp~  120 (163)
T COG4297          52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQEL---EVGEGDVLLIPAGVGHCRLHSSADFQVVGAYPP  120 (163)
T ss_pred             ccccccccccCCcceEEEEecceeEEEecCCCCcee---eecCCCEEEEecCcccccccCCCCeEEEcccCC
Confidence            344443 69999999999999999999999998873   389999999999999999888888988886643

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.11  E-value=1.9e-05  Score=68.37  Aligned_cols=85  Identities=15%  Similarity=0.189  Sum_probs=72.3

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      +|-+-.|.+.|||-.--|-|-+-...+||++|++++-.=+   +--+..++.+||+||||.|-||-- |.+++++..|..
T Consensus        45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~---rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa  121 (142)
T COG4101          45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN---RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA  121 (142)
T ss_pred             eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc---ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence            6778889999999999999988778999999999987543   224678899999999999999986 999999999888


Q ss_pred             EecCCCCcc
Q 046186          412 KTNDNAMIS  420 (436)
Q Consensus       412 ~~s~~p~~~  420 (436)
                      .+..++..+
T Consensus       122 RsDp~~~Es  130 (142)
T COG4101         122 RSDPNPQES  130 (142)
T ss_pred             ccCCCCCcC
Confidence            877776543

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.04  E-value=1.9e-05  Score=71.44  Aligned_cols=85  Identities=13%  Similarity=0.273  Sum_probs=70.0

Q ss_pred             CCCccccccceEEEEEecCCcee-cccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCC--CEEE-EE
Q 046186          325 NLPVLRWIQLSAERGLLHRNAMM-VPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQN--FAVV-KR  400 (436)
Q Consensus       325 ~~P~L~~l~ls~~~v~L~~gam~-~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g--~~h~-~~  400 (436)
                      ++=.|+  ++.+....|.||+-. .+|||..-.|++||++|++.+.+=+  |    ...|++||+.=+|+|  -+|+ +|
T Consensus        35 ~~~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~--~----e~~lrpGD~~gFpAG~~~aHhliN  106 (161)
T COG3837          35 DALGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG--G----ETRLRPGDSAGFPAGVGNAHHLIN  106 (161)
T ss_pred             hhcChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEECC--e----eEEecCCceeeccCCCcceeEEee
Confidence            455677  788889999999765 5799999999999999999887543  2    234999999999999  6665 59


Q ss_pred             eCCCcEEEEEEEecCCC
Q 046186          401 AGGAEFEWISFKTNDNA  417 (436)
Q Consensus       401 ag~e~~~~l~f~~s~~p  417 (436)
                      .++..+.+|+..+....
T Consensus       107 ~s~~~~~yL~vG~r~~~  123 (161)
T COG3837         107 RSDVILRYLEVGTREPD  123 (161)
T ss_pred             cCCceEEEEEecccccc
Confidence            99999999999887653

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.00  E-value=4.6e-05  Score=71.03  Aligned_cols=74  Identities=12%  Similarity=0.037  Sum_probs=58.8

Q ss_pred             cceEEEEEecCCceec-ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEE
Q 046186          333 QLSAERGLLHRNAMMV-PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWIS  410 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~-PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~  410 (436)
                      .+.+....+.||+-.. .||| ...|+.||++|++.+.+-+    .  ..+|.+||.++||.+-+|.. |.+++.+.++.
T Consensus       106 ~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~~~----~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~  178 (185)
T PRK09943        106 TLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTING----Q--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS  178 (185)
T ss_pred             eeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEECC----E--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence            4555667889998655 4556 5589999999999998732    2  34599999999999999976 77788999998


Q ss_pred             EEe
Q 046186          411 FKT  413 (436)
Q Consensus       411 f~~  413 (436)
                      +.+
T Consensus       179 ~~~  181 (185)
T PRK09943        179 AHT  181 (185)
T ss_pred             EeC
Confidence            864

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=97.99  E-value=3.4e-05  Score=82.31  Aligned_cols=77  Identities=8%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+.++.|.||+-..+|+|....|..||++|++.+++=+      -...|.+||.++||.+.+|.. |.|++++++++.
T Consensus       384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg------~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V  457 (478)
T PRK15460        384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG------DIKLLGENESIYIPLGATHCLENPGKIPLDLIEV  457 (478)
T ss_pred             cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC------EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            6788899999999888899998889999999999999765      235599999999999999987 889999999998


Q ss_pred             EecC
Q 046186          412 KTND  415 (436)
Q Consensus       412 ~~s~  415 (436)
                      .+-+
T Consensus       458 ~~g~  461 (478)
T PRK15460        458 RSGS  461 (478)
T ss_pred             EcCC
Confidence            7654

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=97.97  E-value=5.7e-05  Score=70.68  Aligned_cols=92  Identities=20%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             ccccccceEEEEEEecCCce------ecCeeecC-------CceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCcc
Q 046186           60 EQFQCAGVAVVRHTIRQKGL------LLPQFSNS-------PQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES  126 (436)
Q Consensus        60 p~l~~~gv~~~r~~i~pg~l------~~Ph~h~a-------~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~  126 (436)
                      ..|+..++.....+|.||-+      ..-|||+.       +|+.+|++|    +|.+-+=.+.                
T Consensus        43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G----~g~~lLq~~~----------------  102 (182)
T PF06560_consen   43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSG----EGLILLQKEE----------------  102 (182)
T ss_dssp             -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEES----SEEEEEE-TT----------------
T ss_pred             ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeC----EEEEEEEecC----------------
Confidence            45777789999999999974      56699864       899999999    9998774332                


Q ss_pred             CCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       127 ~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                       +....|  -....+++||+++||+|.+|-..|.|+++|++.++....
T Consensus       103 -~~~~~~--~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~~  147 (182)
T PF06560_consen  103 -GDDVGD--VIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPRD  147 (182)
T ss_dssp             -S-------EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred             -CCccee--EEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEecC
Confidence             111111  125789999999999999999999999999998877643

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.97  E-value=6.3e-05  Score=62.01  Aligned_cols=72  Identities=17%  Similarity=0.140  Sum_probs=55.3

Q ss_pred             ceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .++...+.|.|++.-.|...- ..-+.||++|    ...+.+                            |.....+.+|
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G----~v~Vti----------------------------~~~~f~v~~G   58 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKG----KVEVTI----------------------------HETSFVVTKG   58 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEES----EEEEEE----------------------------TTEEEEEETT
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeC----EEEEEE----------------------------cCcEEEEeCC
Confidence            478889999999998887765 9999999999    888875                            4557899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      |+|.||+|-...+.|.++++++++.
T Consensus        59 ~~F~VP~gN~Y~i~N~~~~~a~LfF   83 (85)
T PF11699_consen   59 GSFQVPRGNYYSIKNIGNEEAKLFF   83 (85)
T ss_dssp             -EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEE
Confidence            9999999999999999998888764

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=97.96  E-value=7.7e-05  Score=67.02  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=53.5

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      .+.+-.-+|.||.-.++|=|..+|+++|++|    +|++-+-  +|.+.|.                 ..-+.+.+-+++
T Consensus        43 evEVwlQTfAPG~~TPiHRHsCEEVFvVLkG----~GTl~l~--~~~~~~p-----------------G~pqef~~~pnS   99 (167)
T PF02041_consen   43 EVEVWLQTFAPGSATPIHRHSCEEVFVVLKG----SGTLYLA--SSHEKYP-----------------GKPQEFPIFPNS   99 (167)
T ss_dssp             SEEEEEEEE-TT-B--EEEESS-EEEEEEE------EEEEE----SSSSS-------------------S-EEEEE-TTE
T ss_pred             eeeEEeeeecCCCCCCCccccccEEEEEEec----ceEEEEe--cccccCC-----------------CCceEEEecCCC
Confidence            4789999999999999999999999999999    9998875  2322221                 012358899999


Q ss_pred             EEEeCCCCeEEEeccC-CCcEEEEEEEe
Q 046186          146 IFALPAGVAHWCYNEG-STPVVAVVLLD  172 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g-~e~l~~v~~~d  172 (436)
                      .|.||.+.+|-+.|++ .+++.++.+++
T Consensus       100 Tf~IPvn~~HQv~NT~e~eDlqvlViiS  127 (167)
T PF02041_consen  100 TFHIPVNDAHQVWNTNEHEDLQVLVIIS  127 (167)
T ss_dssp             EEEE-TT--EEEE---SSS-EEEEEEEE
T ss_pred             eEEeCCCCcceeecCCCCcceEEEEEec
Confidence            9999999999999998 48999887765

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.84  E-value=5.8e-05  Score=70.09  Aligned_cols=58  Identities=19%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186           75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA  154 (436)
Q Consensus        75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~  154 (436)
                      .||.-...|+|+.+|++|+++|    ...+.+++.|                        ..+...|++||+|++|+|++
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG----~~~l~v~d~g------------------------~~~~v~L~eGd~fllP~gvp   93 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEG----DMYLKVQEDG------------------------KRRDVPIREGEMFLLPPHVP   93 (177)
T ss_pred             cCCcccccccCCCceEEEEECC----eEEEEEEcCC------------------------ceeeEEECCCCEEEeCCCCC
Confidence            6777777899999999999999    9999987643                        11468999999999999999


Q ss_pred             EEEecc
Q 046186          155 HWCYNE  160 (436)
Q Consensus       155 h~~~N~  160 (436)
                      |.....
T Consensus        94 HsP~r~   99 (177)
T PRK13264         94 HSPQRE   99 (177)
T ss_pred             cCCccC
Confidence            998774

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=97.82  E-value=9.9e-05  Score=62.89  Aligned_cols=63  Identities=19%  Similarity=0.395  Sum_probs=45.6

Q ss_pred             CCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeE
Q 046186           76 QKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAH  155 (436)
Q Consensus        76 pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h  155 (436)
                      ++-...||||+.-++.||++|    ++.+.+                            ..+.+.+++||++.+|+|.+|
T Consensus        12 ~~~~~~~h~h~~~~i~~v~~G----~~~~~~----------------------------~~~~~~l~~g~~~li~p~~~H   59 (136)
T PF02311_consen   12 PNFEFPPHWHDFYEIIYVLSG----EGTLHI----------------------------DGQEYPLKPGDLFLIPPGQPH   59 (136)
T ss_dssp             TT-SEEEETT-SEEEEEEEEE-----EEEEE----------------------------TTEEEEE-TT-EEEE-TTS-E
T ss_pred             CCCccCCEECCCEEEEEEeCC----EEEEEE----------------------------CCEEEEEECCEEEEecCCccE
Confidence            444578999999999999999    999864                            245799999999999999999


Q ss_pred             EEeccCCCcEEEEEE
Q 046186          156 WCYNEGSTPVVAVVL  170 (436)
Q Consensus       156 ~~~N~g~e~l~~v~~  170 (436)
                      .+.-.+++++..+.+
T Consensus        60 ~~~~~~~~~~~~~~i   74 (136)
T PF02311_consen   60 SYYPDSNEPWEYYWI   74 (136)
T ss_dssp             EEEE-TTSEEEEEEE
T ss_pred             EEecCCCCCEEEEEE
Confidence            998887667766654

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.77  E-value=0.0001  Score=67.51  Aligned_cols=61  Identities=20%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186           75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA  154 (436)
Q Consensus        75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~  154 (436)
                      .||.-.-.|.|+.+|++||++|    +..+-+...|                        .-+...|++||++++|+|++
T Consensus        36 Gpn~R~d~H~~~tdE~FyqleG----~~~l~v~d~g------------------------~~~~v~L~eGd~flvP~gvp   87 (159)
T TIGR03037        36 GPNARTDFHDDPGEEFFYQLKG----EMYLKVTEEG------------------------KREDVPIREGDIFLLPPHVP   87 (159)
T ss_pred             CCCCCcccccCCCceEEEEEcc----eEEEEEEcCC------------------------cEEEEEECCCCEEEeCCCCC
Confidence            5555566787779999999999    9888876432                        12468999999999999999


Q ss_pred             EEEeccCCC
Q 046186          155 HWCYNEGST  163 (436)
Q Consensus       155 h~~~N~g~e  163 (436)
                      |......++
T Consensus        88 HsP~r~~~t   96 (159)
T TIGR03037        88 HSPQRPAGS   96 (159)
T ss_pred             cccccCCCc
Confidence            998875443

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.72  E-value=0.00016  Score=59.79  Aligned_cols=66  Identities=20%  Similarity=0.252  Sum_probs=51.4

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .+..+..+.+.||+.++.|.|+..+.+||++|    +...+                                ..++.+|
T Consensus        22 ~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG----~~~d~--------------------------------~~~~~~G   65 (91)
T PF12973_consen   22 TGERVSLLRLEPGASLPRHRHPGGEEILVLEG----ELSDG--------------------------------DGRYGAG   65 (91)
T ss_dssp             TTEEEEEEEE-TTEEEEEEEESS-EEEEEEEC----EEEET--------------------------------TCEEETT
T ss_pred             ccCEEEEEEECCCCCcCccCCCCcEEEEEEEE----EEEEC--------------------------------CccCCCC
Confidence            46788999999999999999999999999999    54432                                1367999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEE
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAV  168 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v  168 (436)
                      |.+..|+|..|-...  ++.+.++
T Consensus        66 ~~~~~p~g~~h~~~s--~~gc~~~   87 (91)
T PF12973_consen   66 DWLRLPPGSSHTPRS--DEGCLIL   87 (91)
T ss_dssp             EEEEE-TTEEEEEEE--SSCEEEE
T ss_pred             eEEEeCCCCccccCc--CCCEEEE
Confidence            999999999999884  4555443

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.68  E-value=0.00022  Score=65.37  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=47.6

Q ss_pred             eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee-eeeccCcEEEeCCCCeEEE
Q 046186           79 LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI-RRFRQGDIFALPAGVAHWC  157 (436)
Q Consensus        79 l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~-~~l~~GDv~~iPaG~~h~~  157 (436)
                      +...|.|..+|+-||+.|    +|...+-..+                        ..-+ ..+++||.++||+|+.||+
T Consensus        84 f~~EH~H~deEvR~i~~G----~g~Fdvr~~~------------------------~~wiri~~e~GDli~vP~g~~HrF  135 (157)
T PF03079_consen   84 FFEEHTHEDEEVRYIVDG----SGYFDVRDGD------------------------DVWIRILCEKGDLIVVPAGTYHRF  135 (157)
T ss_dssp             HCS-EEESS-EEEEEEEC----EEEEEEE-TT------------------------CEEEEEEEETTCEEEE-TT--EEE
T ss_pred             hheeEecChheEEEEeCc----EEEEEEEcCC------------------------CEEEEEEEcCCCEEecCCCCceeE
Confidence            466999999999999999    9999986432                        1123 6889999999999999999


Q ss_pred             eccCCCcEEEEEEEe
Q 046186          158 YNEGSTPVVAVVLLD  172 (436)
Q Consensus       158 ~N~g~e~l~~v~~~d  172 (436)
                      .-..+..+.++=+|.
T Consensus       136 ~~~~~~~i~aiRlF~  150 (157)
T PF03079_consen  136 TLGESPYIKAIRLFK  150 (157)
T ss_dssp             EESTTSSEEEEEEES
T ss_pred             EcCCCCcEEEEEeec
Confidence            865556777776664

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.63  E-value=0.00034  Score=65.04  Aligned_cols=57  Identities=19%  Similarity=0.383  Sum_probs=46.7

Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA  401 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a  401 (436)
                      .||.=..-|+|+ +.||.|+++|+..++|++ +|+ .-+..|++||+|+||+|-+|.-.+
T Consensus        42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~-~~~v~L~eGd~fllP~gvpHsP~r   98 (177)
T PRK13264         42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGK-RRDVPIREGEMFLLPPHVPHSPQR   98 (177)
T ss_pred             cCCcccccccCC-CceEEEEECCeEEEEEEc-CCc-eeeEEECCCCEEEeCCCCCcCCcc
Confidence            466667779986 689999999999999999 343 235569999999999999998644

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=97.54  E-value=0.0002  Score=68.76  Aligned_cols=72  Identities=14%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      +..+..+.|.||+-++.|.|...|+.+|++|    .-    .+.                            ...+.+||
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG----~f----~de----------------------------~g~y~~Gd  169 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHG----AF----SDE----------------------------TGVYGVGD  169 (215)
T ss_pred             CcEEEEEEECCCCccCCCcCCCcEEEEEEEE----EE----EcC----------------------------CCccCCCe
Confidence            4577899999999999999999999999999    52    111                            24789999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      .+.+|+|..|...+.+++++++++++|-
T Consensus       170 ~i~~p~~~~H~p~a~~~~~Cicl~v~da  197 (215)
T TIGR02451       170 FEEADGSVQHQPRTVSGGDCLCLAVLDA  197 (215)
T ss_pred             EEECCCCCCcCcccCCCCCeEEEEEecC
Confidence            9999999999999998899999988873

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.52  E-value=0.00053  Score=56.57  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=52.3

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWI  409 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l  409 (436)
                      .+++..+.|.||+.-.|--.-+.+-+.||++|...|++-+   + .|  .+.+|++|+||+|--+.+ |.+++.+.++
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~---~-~f--~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf   82 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHE---T-SF--VVTKGGSFQVPRGNYYSIKNIGNEEAKLF   82 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETT---E-EE--EEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcC---c-EE--EEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence            5788999999999999888878889999999999999854   2 23  499999999999999887 8887766553

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.49  E-value=0.00049  Score=63.21  Aligned_cols=68  Identities=22%  Similarity=0.368  Sum_probs=54.9

Q ss_pred             eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEe
Q 046186           79 LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCY  158 (436)
Q Consensus        79 l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~  158 (436)
                      +..=|.|..+|+.|++.|    +|...+..+..                       +.....+.+||.+.||+|+-||+-
T Consensus        87 F~~EH~H~d~EvRy~vaG----~GiF~v~~~d~-----------------------~~~~i~c~~gDLI~vP~gi~HwFt  139 (181)
T COG1791          87 FLQEHLHTDDEVRYFVAG----EGIFDVHSPDG-----------------------KVYQIRCEKGDLISVPPGIYHWFT  139 (181)
T ss_pred             HHHHhccCCceEEEEEec----ceEEEEECCCC-----------------------cEEEEEEccCCEEecCCCceEEEE
Confidence            355699999999999999    99999876632                       233467788999999999999998


Q ss_pred             ccCCCcEEEEEEEec
Q 046186          159 NEGSTPVVAVVLLDV  173 (436)
Q Consensus       159 N~g~e~l~~v~~~d~  173 (436)
                      -.-+-.+++|-+|..
T Consensus       140 lt~~~~f~AvRlF~~  154 (181)
T COG1791         140 LTESPNFKAVRLFTE  154 (181)
T ss_pred             ccCCCcEEEEEEeeC
Confidence            766667888777763

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.49  E-value=0.00052  Score=62.84  Aligned_cols=51  Identities=18%  Similarity=0.444  Sum_probs=40.8

Q ss_pred             ccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186          349 PHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA  401 (436)
Q Consensus       349 PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a  401 (436)
                      .+||.+ +.||.|+++|+..+.+.+. |. .-+-.|++||+|+||+|-+|.-.+
T Consensus        41 ~d~H~~~tdE~FyqleG~~~l~v~d~-g~-~~~v~L~eGd~flvP~gvpHsP~r   92 (159)
T TIGR03037        41 TDFHDDPGEEFFYQLKGEMYLKVTEE-GK-REDVPIREGDIFLLPPHVPHSPQR   92 (159)
T ss_pred             cccccCCCceEEEEEcceEEEEEEcC-Cc-EEEEEECCCCEEEeCCCCCccccc
Confidence            345554 7899999999999999985 33 234569999999999999998654

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=97.44  E-value=0.00054  Score=58.31  Aligned_cols=66  Identities=20%  Similarity=0.423  Sum_probs=42.5

Q ss_pred             CCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-CcEEEEEEEecC
Q 046186          343 RNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISFKTND  415 (436)
Q Consensus       343 ~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-e~~~~l~f~~s~  415 (436)
                      ++-.+.||||+ -.++.||++|++.+.+ +  |+   ...+++||+++||.+.+|...+.. ++++++.+.-+.
T Consensus        12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~-~--~~---~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~~   78 (136)
T PF02311_consen   12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI-D--GQ---EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFSP   78 (136)
T ss_dssp             TT-SEEEETT--SEEEEEEEEE-EEEEE-T--TE---EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE--
T ss_pred             CCCccCCEECC-CEEEEEEeCCEEEEEE-C--CE---EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEECH
Confidence            55667899997 6799999999999954 2  22   244999999999999999886554 477765554443

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.39  E-value=0.00035  Score=62.04  Aligned_cols=66  Identities=17%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             CCce-ecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCC
Q 046186           76 QKGL-LLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGV  153 (436)
Q Consensus        76 pg~l-~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~  153 (436)
                      .|++ .--|||. +.|++.|++|    ++.+.+=-++                         .....+.+||+++||||+
T Consensus        51 ~g~Vf~yHHYHs~aHEVl~vlrg----qA~l~iGG~~-------------------------G~el~v~~GDvlliPAGv  101 (163)
T COG4297          51 RGGVFNYHHYHSGAHEVLGVLRG----QAGLQIGGAD-------------------------GQELEVGEGDVLLIPAGV  101 (163)
T ss_pred             cccccccccccCCcceEEEEecc----eeEEEecCCC-------------------------CceeeecCCCEEEEecCc
Confidence            3443 4568898 9999999999    9888763222                         235789999999999999


Q ss_pred             eEEEeccCCCcEEEEEEE
Q 046186          154 AHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       154 ~h~~~N~g~e~l~~v~~~  171 (436)
                      .|.- +..+-++.++..+
T Consensus       102 GH~r-l~sS~DF~VvGaY  118 (163)
T COG4297         102 GHCR-LHSSADFQVVGAY  118 (163)
T ss_pred             cccc-ccCCCCeEEEccc
Confidence            9954 4445556555533

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=97.37  E-value=0.0016  Score=62.84  Aligned_cols=69  Identities=17%  Similarity=0.306  Sum_probs=53.3

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCE-EEEEeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFA-VVKRAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~-h~~~ag~e~~~~l~f  411 (436)
                      .|++..+.++...   -+||.+-.|+.||++|+.++++   +|+. +  .+++||+++||+|-. |+...  ....|+..
T Consensus       156 ~m~aGf~~~~~~s---f~wtl~~dEi~YVLEGe~~l~I---dG~t-~--~l~pGDvlfIPkGs~~hf~tp--~~aRflyV  224 (233)
T PRK15457        156 SMAAGFMQWENAF---FPWTLNYDEIDMVLEGELHVRH---EGET-M--IAKAGDVMFIPKGSSIEFGTP--SSVRFLYV  224 (233)
T ss_pred             ceeeEEEEEecCc---cceeccceEEEEEEEeEEEEEE---CCEE-E--EeCCCcEEEECCCCeEEecCC--CCeeEEEE
Confidence            7889999998744   3499999999999999999998   3443 3  499999999999998 55333  35555444


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      .
T Consensus       225 ~  225 (233)
T PRK15457        225 A  225 (233)
T ss_pred             E
Confidence            3

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.37  E-value=0.0027  Score=56.33  Aligned_cols=95  Identities=9%  Similarity=0.034  Sum_probs=54.2

Q ss_pred             CCeEEEEeCCCCCCccccccceEEEE-EecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCc-cEEEE
Q 046186          314 GAGHITTLNSFNLPVLRWIQLSAERG-LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRG-QIMVV  391 (436)
Q Consensus       314 ~~G~~~~~~~~~~P~L~~l~ls~~~v-~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~G-dv~vV  391 (436)
                      ..|.++.+...+-....  =--+..+ ...+|..+.-|+|...+++.+|++|+..+.+-+..+...|.  |..- +.++|
T Consensus        14 ~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~--L~~~~~~L~I   89 (131)
T PF05523_consen   14 ERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFI--LDEPNKGLYI   89 (131)
T ss_dssp             TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEE--E--TTEEEEE
T ss_pred             CCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEE--ECCCCeEEEE
Confidence            46888888766322222  1123333 23455569999999999999999999999988766554443  5444 69999


Q ss_pred             cCCCEEEEEeCCCcEEEEEEE
Q 046186          392 PQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       392 P~g~~h~~~ag~e~~~~l~f~  412 (436)
                      |.|++|.+..-++++..|.+-
T Consensus        90 ppg~w~~~~~~s~~svlLv~a  110 (131)
T PF05523_consen   90 PPGVWHGIKNFSEDSVLLVLA  110 (131)
T ss_dssp             -TT-EEEEE---TT-EEEEEE
T ss_pred             CCchhhHhhccCCCcEEEEEc
Confidence            999999985555557766654

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.35  E-value=0.0019  Score=56.62  Aligned_cols=97  Identities=16%  Similarity=0.187  Sum_probs=78.4

Q ss_pred             ceeecCCcEEE-EeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCC
Q 046186           43 NRVECEAGVVE-TWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG  121 (436)
Q Consensus        43 ~~~~se~G~~e-~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~  121 (436)
                      +.|.++++..+ .+-.++    +.|+++-.-+|.+|.-...||-+-=|-+|+++|    +|.+..+..            
T Consensus        14 r~V~~~~w~SrRlll~~D----gmGFS~h~T~i~aGtet~~~YknHlEAvyci~G----~Gev~~~~~------------   73 (126)
T PF06339_consen   14 RDVDAENWESRRLLLKDD----GMGFSFHETTIYAGTETHIHYKNHLEAVYCIEG----EGEVEDLDT------------   73 (126)
T ss_pred             eeEEcCCceEEEEEEccC----CCCEEEEEEEEeCCCeeEEEecCceEEEEEEec----eEEEEEccC------------
Confidence            45666655533 222222    468999999999999999999999999999999    999987632            


Q ss_pred             CCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          122 GFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       122 ~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                                    .+++.+++|.++++-+--.|++...  ++++++|+|++.=
T Consensus        74 --------------G~~~~i~pGt~YaLd~hD~H~lra~--~dm~~vCVFnPpl  111 (126)
T PF06339_consen   74 --------------GEVHPIKPGTMYALDKHDRHYLRAK--TDMRLVCVFNPPL  111 (126)
T ss_pred             --------------CcEEEcCCCeEEecCCCccEEEEec--CCEEEEEEcCCCC
Confidence                          4589999999999999999999865  4899999998543

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.31  E-value=0.00069  Score=67.99  Aligned_cols=66  Identities=9%  Similarity=-0.028  Sum_probs=53.6

Q ss_pred             eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186           67 VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI  146 (436)
Q Consensus        67 v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv  146 (436)
                      .+.+.....|..|..+|||+.-|+.||++|    .+.+-+                            ..+...+.+||+
T Consensus        26 ~~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G----~~~~~i----------------------------~g~~~~l~~Gd~   73 (302)
T PRK10371         26 QRLEIEFRPPHIMPTSHWHGQVEVNVPFDG----DVEYLI----------------------------NNEKVQINQGHI   73 (302)
T ss_pred             ceeEEEeeCCCCCCCCCccccEEEEEecCC----cEEEEE----------------------------CCEEEEEcCCcE
Confidence            455556777888999999999999999999    877653                            245789999999


Q ss_pred             EEeCCCCeEEEeccCCCc
Q 046186          147 FALPAGVAHWCYNEGSTP  164 (436)
Q Consensus       147 ~~iPaG~~h~~~N~g~e~  164 (436)
                      ++|++|.+|.+...++..
T Consensus        74 ili~s~~~H~~~~~~~~~   91 (302)
T PRK10371         74 TLFWACTPHQLTDPGNCR   91 (302)
T ss_pred             EEEecCCcccccccCCCc
Confidence            999999999876655433

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.30  E-value=0.0017  Score=59.59  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             ceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-CcEEEEEEEecC
Q 046186          345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISFKTND  415 (436)
Q Consensus       345 am~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-e~~~~l~f~~s~  415 (436)
                      -....|.|.. .|+-|+++|+|.+-|.+.++.- ++-.+.+||+++||+|..|....+. ..+..+=||+++
T Consensus        83 ~f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~w-iri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~  152 (157)
T PF03079_consen   83 KFFEEHTHED-EEVRYIVDGSGYFDVRDGDDVW-IRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDE  152 (157)
T ss_dssp             HHCS-EEESS--EEEEEEECEEEEEEE-TTCEE-EEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSC
T ss_pred             hhheeEecCh-heEEEEeCcEEEEEEEcCCCEE-EEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCC
Confidence            3567899965 5999999999999999877553 4456999999999999999997665 678888888664

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=97.29  E-value=0.0023  Score=61.85  Aligned_cols=74  Identities=14%  Similarity=0.094  Sum_probs=53.4

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      +..|++..+.++...+  |++++..|+.||++|    +..+.+                            ..+.+.+++
T Consensus       154 ~s~m~aGf~~~~~~sf--~wtl~~dEi~YVLEG----e~~l~I----------------------------dG~t~~l~p  199 (233)
T PRK15457        154 GSSMAAGFMQWENAFF--PWTLNYDEIDMVLEG----ELHVRH----------------------------EGETMIAKA  199 (233)
T ss_pred             CCceeeEEEEEecCcc--ceeccceEEEEEEEe----EEEEEE----------------------------CCEEEEeCC
Confidence            3457888888887443  333459999999999    888875                            135789999


Q ss_pred             CcEEEeCCCCe-EEEeccCCCcEEEEEEEecC
Q 046186          144 GDIFALPAGVA-HWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       144 GDv~~iPaG~~-h~~~N~g~e~l~~v~~~d~~  174 (436)
                      ||+++||+|.. || .+.+  .+.+++++-.+
T Consensus       200 GDvlfIPkGs~~hf-~tp~--~aRflyV~~Pa  228 (233)
T PRK15457        200 GDVMFIPKGSSIEF-GTPS--SVRFLYVAWPA  228 (233)
T ss_pred             CcEEEECCCCeEEe-cCCC--CeeEEEEEecC
Confidence            99999999999 66 4433  45555555433

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.19  E-value=0.0014  Score=67.06  Aligned_cols=74  Identities=16%  Similarity=0.284  Sum_probs=62.4

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      .|.+..-.|.||....||=| ++..+.||++|+|-.++|+  |++ ++  +++||+|++|.+..|.- |.+++.+.|+.+
T Consensus        80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~--g~~-~~--~~~gD~~~tP~w~wH~H~n~~d~~~~wld~  153 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVD--GER-TT--MHPGDFIITPSWTWHDHGNPGDEPMIWLDG  153 (335)
T ss_pred             hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEEC--CEE-Ee--eeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence            67788889999999999999 5668999999999878886  443 44  89999999999999986 777888888655


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      .
T Consensus       154 l  154 (335)
T TIGR02272       154 L  154 (335)
T ss_pred             C
Confidence            3

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.14  E-value=0.0016  Score=53.82  Aligned_cols=64  Identities=14%  Similarity=0.122  Sum_probs=48.9

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEW  408 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~  408 (436)
                      +..+..+++.||+..+.|+|+.. |.+|||+|+..    +.+      .++.+||.++.|.|..|...+ .+++.+
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~g~-ee~~VLeG~~~----d~~------~~~~~G~~~~~p~g~~h~~~s-~~gc~~   86 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHPGG-EEILVLEGELS----DGD------GRYGAGDWLRLPPGSSHTPRS-DEGCLI   86 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEE----ETT------CEEETTEEEEE-TTEEEEEEE-SSCEEE
T ss_pred             cCEEEEEEECCCCCcCccCCCCc-EEEEEEEEEEE----ECC------ccCCCCeEEEeCCCCccccCc-CCCEEE
Confidence            56788999999999999999655 66799999877    333      236899999999999998876 445433

>PRK13501 transcriptional activator RhaR; Provisional

Probab=97.10  E-value=0.0014  Score=64.94  Aligned_cols=56  Identities=16%  Similarity=0.177  Sum_probs=46.3

Q ss_pred             cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186           75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA  154 (436)
Q Consensus        75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~  154 (436)
                      .+..-..||||+.-|++||++|    +|.+.+                            ..+.+.+.+||+++||+|.+
T Consensus        26 ~~~~~~~~H~H~~~ei~~i~~G----~~~~~i----------------------------~~~~~~l~~g~~~~I~p~~~   73 (290)
T PRK13501         26 YPQETFVEHTHQFCEIVIVWRG----NGLHVL----------------------------NDHPYRITCGDVFYIQAADH   73 (290)
T ss_pred             CCCCCCccccccceeEEEEecC----ceEEEE----------------------------CCeeeeecCCeEEEEcCCCc
Confidence            3444467999999999999999    999875                            13478999999999999999


Q ss_pred             EEEeccCC
Q 046186          155 HWCYNEGS  162 (436)
Q Consensus       155 h~~~N~g~  162 (436)
                      |++...++
T Consensus        74 H~~~~~~~   81 (290)
T PRK13501         74 HSYESVHD   81 (290)
T ss_pred             ccccccCC
Confidence            99876544

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=97.09  E-value=0.0024  Score=62.71  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             ceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEE
Q 046186           78 GLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWC  157 (436)
Q Consensus        78 ~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~  157 (436)
                      ....||||+..|++||++|    .+.+.+                            ..+...+.+||++.||+|..|..
T Consensus        34 ~~~~~H~H~~~ei~~v~~G----~~~~~i----------------------------~~~~~~l~~g~l~~i~p~~~H~~   81 (278)
T PRK10296         34 SVSGLHQHDYYEFTLVLTG----RYYQEI----------------------------NGKRVLLERGDFVFIPLGSHHQS   81 (278)
T ss_pred             cCCCCcccccEEEEEEEec----eEEEEE----------------------------CCEEEEECCCcEEEeCCCCccce
Confidence            3568999999999999999    888764                            23468999999999999999966


Q ss_pred             ecc
Q 046186          158 YNE  160 (436)
Q Consensus       158 ~N~  160 (436)
                      ...
T Consensus        82 ~~~   84 (278)
T PRK10296         82 FYE   84 (278)
T ss_pred             eee
Confidence            543

>PRK13500 transcriptional activator RhaR; Provisional

Probab=97.03  E-value=0.002  Score=64.84  Aligned_cols=55  Identities=18%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             CCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeE
Q 046186           76 QKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAH  155 (436)
Q Consensus        76 pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h  155 (436)
                      |.....+|||+.-|++||++|    .|.+.+                            ..+.+.+++||+++||+|..|
T Consensus        57 ~~~~~~~H~H~~~el~~v~~G----~g~~~v----------------------------~~~~~~l~~Gdl~~I~~~~~H  104 (312)
T PRK13500         57 PQDVFAEHTHDFCELVIVWRG----NGLHVL----------------------------NDRPYRITRGDLFYIHADDKH  104 (312)
T ss_pred             CCCCCCccccceEEEEEEEcC----eEEEEE----------------------------CCEEEeecCCeEEEECCCCee
Confidence            444578999999999999999    998764                            134689999999999999999


Q ss_pred             EEeccCC
Q 046186          156 WCYNEGS  162 (436)
Q Consensus       156 ~~~N~g~  162 (436)
                      .+....+
T Consensus       105 ~~~~~~~  111 (312)
T PRK13500        105 SYASVND  111 (312)
T ss_pred             cccccCC
Confidence            8776444

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=96.96  E-value=0.0069  Score=54.70  Aligned_cols=119  Identities=13%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             cccccCCCCCCCcccCCC-eEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC
Q 046186          298 LRENIGDPSKADIYTQGA-GHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR  376 (436)
Q Consensus       298 ~~~Ni~~~~~~d~~~~~~-G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~  376 (436)
                      +..||.. ..-|-|...| -.++.+- .-+-.++  .+.+-+-.+.||.-.++|=|. ..|+.+|++|+|...+..++++
T Consensus        11 ~Vr~ise-lpq~~ygr~GLsH~TvAG-a~~hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~   85 (167)
T PF02041_consen   11 LVRNISE-LPQDNYGRPGLSHITVAG-ALLHGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEK   85 (167)
T ss_dssp             SEEEGGG-S--B-TT-TTEEEEEEE--HHHH--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSS
T ss_pred             eeEEhhh-CccccccCCCcceEEeeh-hhhcCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEeccccc
Confidence            3446653 2233343233 3344443 2234556  567888899999999999994 4599999999999999987632


Q ss_pred             ---eEEEEEecCccEEEEcCCCEEEE-EeCC-CcEEEEEEEecCCCCcccc
Q 046186          377 ---SVYDGEVRRGQIMVVPQNFAVVK-RAGG-AEFEWISFKTNDNAMISPL  422 (436)
Q Consensus       377 ---~~~~~~l~~Gdv~vVP~g~~h~~-~ag~-e~~~~l~f~~s~~p~~~~L  422 (436)
                         ......+-+++.|.||-+-+|-+ |+++ |++..+... +.-|++.|+
T Consensus        86 ~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlVii-SrpPvkvf~  135 (167)
T PF02041_consen   86 YPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVII-SRPPVKVFI  135 (167)
T ss_dssp             S--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEE-ESSS--EEE
T ss_pred             CCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEe-cCCCeEEEE
Confidence               23456689999999999999988 8885 899988875 444555554

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=96.93  E-value=0.0023  Score=62.86  Aligned_cols=209  Identities=19%  Similarity=0.168  Sum_probs=95.4

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .|.+..++.+.+|-..+||+|+++.-+||++|    ....+     .+                      ..+..-|.+|
T Consensus        34 ~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G----~~~~~-----~~----------------------~a~~~~l~~G   82 (251)
T PF14499_consen   34 DGPSGMRVKFPAGFSSPPHIHNADYRGTVISG----ELHNG-----DP----------------------KAAAMWLPAG   82 (251)
T ss_dssp             TS-EEEEEEE-TT-EE--BEESS-EEEEEEES----EEEET-----TE----------------------E-----E-TT
T ss_pred             CCcceEEEEcCCCccCCCcceeeeEEEEEEEe----EEEcC-----CC----------------------cccceecCCC
Confidence            47788999999999999999999999999999    65543     11                      0113579999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHH
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRIL  224 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vL  224 (436)
                      .-+..|+|..|+....+++.+.++-   .++-         .|.                                ..=.
T Consensus        83 sy~~~PaG~~h~~~~~~~~~~~~~e---~g~g---------p~~--------------------------------v~p~  118 (251)
T PF14499_consen   83 SYWFQPAGEPHITAAEGETNLLFIE---IGEG---------PYD--------------------------------VKPS  118 (251)
T ss_dssp             EEEEE-TT-EEEETTS-EE-EEEEE----S------------EE------------------------------------
T ss_pred             ceEeccCCCceeeeccCccEEEEEE---eCCC---------ccc--------------------------------cccc
Confidence            9999999999999887776665442   1110         111                                1111


Q ss_pred             hhhcCCCHHHHHHHhhcCCCceeEEEEcC-ceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccC
Q 046186          225 AEAFNVDERLVRRLRSEKDYRGAIVTVRG-QLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIG  303 (436)
Q Consensus       225 a~af~v~~~~v~~l~~~~~~rG~Iv~~~~-~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~  303 (436)
                      .+||.-.+.-+..     + +..|+-+.. +++=..-.                  .   ....|..-+    -|..   
T Consensus       119 ~~~~~~~e~p~n~-----~-~~~ivwld~~dl~W~~~~------------------~---~~~~g~~~a----~Lwg---  164 (251)
T PF14499_consen  119 EEAFDNGERPINV-----D-KDNIVWLDASDLEWISAP------------------P---GPPPGAQIA----FLWG---  164 (251)
T ss_dssp             -----SS--TT-------G-GG-EEEEECCCS--EE-S------------------S---STT-SEEEE----EEEE---
T ss_pred             ccccccccccccc-----c-cccceEeccccCCccccC------------------C---CCCCcceEE----EEec---
Confidence            1233222211111     1 224555542 22100000                  0   001221110    0110   


Q ss_pred             CCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEe
Q 046186          304 DPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEV  383 (436)
Q Consensus       304 ~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l  383 (436)
                         +     +..|                .+...+++|-.|-=-.+|+|+.. +=+|||+|+...++-...    -...|
T Consensus       165 ---d-----~~~g----------------~~~gll~kLPagf~g~i~~h~~~-eraVvI~G~~~~~~~~~~----~~~~L  215 (251)
T PF14499_consen  165 ---D-----PNTG----------------QYTGLLLKLPAGFTGRIHTHASN-ERAVVISGELDYQSYGAS----NFGTL  215 (251)
T ss_dssp             ---------TTS-----------------EE-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEEE----TTEEE
T ss_pred             ---C-----CCCC----------------ceeeEEEEcCCCCcCceeccCCc-eEEEEEEeEEEEeecccC----CCccc
Confidence               0     1111                24455777888888899999655 789999999999776532    23458


Q ss_pred             cCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          384 RRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       384 ~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|.-|.-|....|-+.++++++.++.-
T Consensus       216 ~~GSYf~s~~~~~H~~~~~e~~~vlyIR  243 (251)
T PF14499_consen  216 DPGSYFGSPGHITHGIFITEDECVLYIR  243 (251)
T ss_dssp             EE-TT-EE--E------EESS-EEEEEE
T ss_pred             cCCcccccCCcccccccccCCCEEEEEE
Confidence            8999999999999987555555555543

>PRK13503 transcriptional activator RhaS; Provisional

Probab=96.84  E-value=0.0019  Score=62.98  Aligned_cols=55  Identities=9%  Similarity=0.077  Sum_probs=45.6

Q ss_pred             cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186           75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA  154 (436)
Q Consensus        75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~  154 (436)
                      .+.....+|||+..+++||++|    .+.+.+                            .++...+++||+++||+|..
T Consensus        23 ~~~~~~~~H~H~~~ei~~v~~G----~~~~~i----------------------------~~~~~~l~~g~~~~i~~~~~   70 (278)
T PRK13503         23 LPQAAFPEHHHDFHEIVIVEHG----TGIHVF----------------------------NGQPYTLSGGTVCFVRDHDR   70 (278)
T ss_pred             CccccccccccCceeEEEEecC----ceeeEe----------------------------cCCcccccCCcEEEECCCcc
Confidence            4556678999999999999999    888764                            13468999999999999999


Q ss_pred             EEEeccC
Q 046186          155 HWCYNEG  161 (436)
Q Consensus       155 h~~~N~g  161 (436)
                      |.+.+..
T Consensus        71 h~~~~~~   77 (278)
T PRK13503         71 HLYEHTD   77 (278)
T ss_pred             chhhhcc
Confidence            9876653

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=96.84  E-value=0.0021  Score=51.41  Aligned_cols=57  Identities=12%  Similarity=0.204  Sum_probs=40.7

Q ss_pred             ceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEE
Q 046186          334 LSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVV  398 (436)
Q Consensus       334 ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~  398 (436)
                      +++..-.-+||.+. -++  ..+|+.||++|++.++.-  +|..   .++++||+|++|+|+...
T Consensus         7 ~~~g~w~~~pg~~~-~~~--~~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~~~p~G~~~~   63 (74)
T PF05899_consen    7 FSAGVWECTPGKFP-WPY--PEDEFFYVLEGEVTITDE--DGET---VTFKAGDAFFLPKGWTGT   63 (74)
T ss_dssp             EEEEEEEEECEEEE-EEE--SSEEEEEEEEEEEEEEET--TTEE---EEEETTEEEEE-TTEEEE
T ss_pred             EEEEEEEECCceeE-eeC--CCCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEEEECCCCEEE
Confidence            45556666776643 234  349999999999988843  5655   349999999999999643

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=96.79  E-value=0.0038  Score=61.29  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=46.7

Q ss_pred             EecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCC
Q 046186           73 TIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAG  152 (436)
Q Consensus        73 ~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG  152 (436)
                      ...|+-...+|||+.-+++||++|    ++.+.+                            ..+.+.+++||+++||+|
T Consensus        24 ~~~~~~~~~~H~h~~~~l~~v~~G----~~~~~i----------------------------~~~~~~l~~g~l~li~~~   71 (282)
T PRK13502         24 DRYPQDVFAEHTHEFCELVMVWRG----NGLHVL----------------------------NERPYRITRGDLFYIRAE   71 (282)
T ss_pred             cCCCCCCCCccccceEEEEEEecC----cEEEEE----------------------------CCEEEeecCCcEEEECCC
Confidence            334444478999999999999999    888874                            245799999999999999


Q ss_pred             CeEEEeccCC
Q 046186          153 VAHWCYNEGS  162 (436)
Q Consensus       153 ~~h~~~N~g~  162 (436)
                      .+|.+...++
T Consensus        72 ~~H~~~~~~~   81 (282)
T PRK13502         72 DKHSYTSVND   81 (282)
T ss_pred             CcccccccCC
Confidence            9998765443

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=96.79  E-value=0.006  Score=48.70  Aligned_cols=58  Identities=17%  Similarity=0.278  Sum_probs=41.6

Q ss_pred             eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186           67 VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI  146 (436)
Q Consensus        67 v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv  146 (436)
                      +++..-..+||.+.. +|. ..|++||++|    +..+..-                           .....++++||+
T Consensus         7 ~~~g~w~~~pg~~~~-~~~-~~E~~~vleG----~v~it~~---------------------------~G~~~~~~aGD~   53 (74)
T PF05899_consen    7 FSAGVWECTPGKFPW-PYP-EDEFFYVLEG----EVTITDE---------------------------DGETVTFKAGDA   53 (74)
T ss_dssp             EEEEEEEEECEEEEE-EES-SEEEEEEEEE----EEEEEET---------------------------TTEEEEEETTEE
T ss_pred             EEEEEEEECCceeEe-eCC-CCEEEEEEEe----EEEEEEC---------------------------CCCEEEEcCCcE
Confidence            455566677876432 333 4999999999    8888731                           234689999999


Q ss_pred             EEeCCCCeEEE
Q 046186          147 FALPAGVAHWC  157 (436)
Q Consensus       147 ~~iPaG~~h~~  157 (436)
                      +++|+|..-.+
T Consensus        54 ~~~p~G~~~~w   64 (74)
T PF05899_consen   54 FFLPKGWTGTW   64 (74)
T ss_dssp             EEE-TTEEEEE
T ss_pred             EEECCCCEEEE
Confidence            99999986554

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PRK13500 transcriptional activator RhaR; Provisional

Probab=96.76  E-value=0.005  Score=61.95  Aligned_cols=56  Identities=9%  Similarity=0.039  Sum_probs=43.8

Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCC
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGA  404 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e  404 (436)
                      .|.....+|||. ..|++||++|+|...+=+      -...+.+||+++||.+-+|.....++
T Consensus        56 ~~~~~~~~H~H~-~~el~~v~~G~g~~~v~~------~~~~l~~Gdl~~I~~~~~H~~~~~~~  111 (312)
T PRK13500         56 YPQDVFAEHTHD-FCELVIVWRGNGLHVLND------RPYRITRGDLFYIHADDKHSYASVND  111 (312)
T ss_pred             CCCCCCCccccc-eEEEEEEEcCeEEEEECC------EEEeecCCeEEEECCCCeecccccCC
Confidence            344457899995 789999999999976543      23459999999999999998755433

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=96.70  E-value=0.014  Score=51.23  Aligned_cols=81  Identities=15%  Similarity=0.205  Sum_probs=68.5

Q ss_pred             cccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEE
Q 046186          331 WIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWIS  410 (436)
Q Consensus       331 ~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~  410 (436)
                      .+|+|+-...|.+|.-...||- |=-|-+||++|+|.++.++. |..   ..+++|.++..-+.=.|...|.. +|..+|
T Consensus        32 gmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~~-G~~---~~i~pGt~YaLd~hD~H~lra~~-dm~~vC  105 (126)
T PF06339_consen   32 GMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLDT-GEV---HPIKPGTMYALDKHDRHYLRAKT-DMRLVC  105 (126)
T ss_pred             CCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEccC-CcE---EEcCCCeEEecCCCccEEEEecC-CEEEEE
Confidence            4699999999999999888883 56699999999999999863 443   34999999999999899999887 899999


Q ss_pred             EEecCCC
Q 046186          411 FKTNDNA  417 (436)
Q Consensus       411 f~~s~~p  417 (436)
                      .|+-+-.
T Consensus       106 VFnPplt  112 (126)
T PF06339_consen  106 VFNPPLT  112 (126)
T ss_pred             EcCCCCc
Confidence            9965543

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=96.65  E-value=0.004  Score=61.16  Aligned_cols=61  Identities=13%  Similarity=0.017  Sum_probs=47.9

Q ss_pred             CCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186           76 QKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA  154 (436)
Q Consensus        76 pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~  154 (436)
                      -+....||||+ .-+++||++|    .+.+.+                            ..+...+++||++++|+|.+
T Consensus        32 ~~~~~~~H~H~~~~~l~~~~~G----~~~~~~----------------------------~~~~~~l~~g~~~ii~~~~~   79 (287)
T TIGR02297        32 FGRNMPVHFHDRYYQLHYLTEG----SIALQL----------------------------DEHEYSEYAPCFFLTPPSVP   79 (287)
T ss_pred             cCCCCCCcccccceeEEEEeeC----ceEEEE----------------------------CCEEEEecCCeEEEeCCCCc
Confidence            34568999998 6999999999    888764                            13468999999999999999


Q ss_pred             EEEeccCCCcEEEE
Q 046186          155 HWCYNEGSTPVVAV  168 (436)
Q Consensus       155 h~~~N~g~e~l~~v  168 (436)
                      |.+....+....++
T Consensus        80 H~~~~~~~~~~~~i   93 (287)
T TIGR02297        80 HGFVTDLDADGHVL   93 (287)
T ss_pred             cccccCCCcceEEE
Confidence            99876554433333

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=96.61  E-value=0.034  Score=51.82  Aligned_cols=71  Identities=15%  Similarity=0.100  Sum_probs=55.3

Q ss_pred             CCceecccccCCC-cEEEEEEeeeEEEEEEeCCCCe-----EEEEEecCc--cEEEEcCCCEEEEEeCCCcEEEEEEEe
Q 046186          343 RNAMMVPHWNLNA-HSIMYAISGSCHVQVVDSYGRS-----VYDGEVRRG--QIMVVPQNFAVVKRAGGAEFEWISFKT  413 (436)
Q Consensus       343 ~gam~~PHwh~~A-~ei~yV~~G~grv~vv~~~G~~-----~~~~~l~~G--dv~vVP~g~~h~~~ag~e~~~~l~f~~  413 (436)
                      +|-+|..|||..- .+++.|++|++..-.||-.-..     ..-..+.+-  .++.||.||+|=..+.++..+++-.-+
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~  132 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVT  132 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEec
Confidence            9999999999998 9999999999999999976322     333345544  899999999998866665555544433

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=96.54  E-value=0.0063  Score=61.09  Aligned_cols=56  Identities=11%  Similarity=0.188  Sum_probs=44.2

Q ss_pred             EEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186          339 GLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA  401 (436)
Q Consensus       339 v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a  401 (436)
                      -.-.+..|..+||| +--|+.|+++|++.+.+=+   +   ...+.+||+++||.+-+|....
T Consensus        31 ~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i~g---~---~~~l~~Gd~ili~s~~~H~~~~   86 (302)
T PRK10371         31 EFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLINN---E---KVQINQGHITLFWACTPHQLTD   86 (302)
T ss_pred             EeeCCCCCCCCCcc-ccEEEEEecCCcEEEEECC---E---EEEEcCCcEEEEecCCcccccc
Confidence            34557788999999 4559999999998776532   3   2349999999999999998644

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.53  E-value=0.016  Score=53.50  Aligned_cols=66  Identities=17%  Similarity=0.304  Sum_probs=55.0

Q ss_pred             ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC-CCcEEEEEEEecCC
Q 046186          349 PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG-GAEFEWISFKTNDN  416 (436)
Q Consensus       349 PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag-~e~~~~l~f~~s~~  416 (436)
                      =|.| .+.|+.|++.|+|.+.|..++|.. +.-.+.+||++.||.|--|+.--+ +..++.|=+|+.+.
T Consensus        90 EH~H-~d~EvRy~vaG~GiF~v~~~d~~~-~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~  156 (181)
T COG1791          90 EHLH-TDDEVRYFVAGEGIFDVHSPDGKV-YQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE  156 (181)
T ss_pred             Hhcc-CCceEEEEEecceEEEEECCCCcE-EEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence            4777 567999999999999999998765 666789999999999999988444 46788888887654

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=96.52  E-value=0.0086  Score=58.88  Aligned_cols=72  Identities=19%  Similarity=0.104  Sum_probs=45.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC-CCcEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG-GAEFEWIS  410 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag-~e~~~~l~  410 (436)
                      |.+..+|++.+|=...|||| ++++-+|||+|.....     +.+.-..-|.+|.-++.|+|.+|+.-+. ++.+.|+.
T Consensus        35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~-----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e  107 (251)
T PF14499_consen   35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG-----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE  107 (251)
T ss_dssp             S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET-----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred             CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC-----CCcccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence            78889999999999999999 6789999999975542     2333344599999999999999987444 35576663

>PRK13502 transcriptional activator RhaR; Provisional

Probab=96.50  E-value=0.0096  Score=58.44  Aligned_cols=57  Identities=9%  Similarity=0.036  Sum_probs=44.4

Q ss_pred             EecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC
Q 046186          340 LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG  403 (436)
Q Consensus       340 ~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~  403 (436)
                      ...|.-...+|||. ..++.||++|++++.+=+   +   ...+.+||+++||.+-+|.....+
T Consensus        24 ~~~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~---~---~~~l~~g~l~li~~~~~H~~~~~~   80 (282)
T PRK13502         24 DRYPQDVFAEHTHE-FCELVMVWRGNGLHVLNE---R---PYRITRGDLFYIRAEDKHSYTSVN   80 (282)
T ss_pred             cCCCCCCCCccccc-eEEEEEEecCcEEEEECC---E---EEeecCCcEEEECCCCcccccccC
Confidence            33444457899995 789999999999988632   2   234999999999999999875543

>PRK13501 transcriptional activator RhaR; Provisional

Probab=96.47  E-value=0.0076  Score=59.65  Aligned_cols=49  Identities=10%  Similarity=0.103  Sum_probs=40.0

Q ss_pred             eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186          346 MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA  401 (436)
Q Consensus       346 m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a  401 (436)
                      -..|||| +-.|+.||++|++.+.| +  |..   ..+.+||+++||.+.+|....
T Consensus        30 ~~~~H~H-~~~ei~~i~~G~~~~~i-~--~~~---~~l~~g~~~~I~p~~~H~~~~   78 (290)
T PRK13501         30 TFVEHTH-QFCEIVIVWRGNGLHVL-N--DHP---YRITCGDVFYIQAADHHSYES   78 (290)
T ss_pred             CCccccc-cceeEEEEecCceEEEE-C--Cee---eeecCCeEEEEcCCCcccccc
Confidence            3569999 57799999999999986 2  232   349999999999999998743

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=96.46  E-value=0.035  Score=51.84  Aligned_cols=72  Identities=14%  Similarity=0.082  Sum_probs=54.8

Q ss_pred             cCCceecccccCC--CcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          342 HRNAMMVPHWNLN--AHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       342 ~~gam~~PHwh~~--A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+|.+|..|+|..  -+++++|++|....=+||..-.     +....+|.+  +..++||.|++|-..+-+++..++-+-
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~  131 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC  131 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence            6799999999954  4799999999999999998532     234445666  669999999999886655555554443


Q ss_pred             e
Q 046186          413 T  413 (436)
Q Consensus       413 ~  413 (436)
                      +
T Consensus       132 ~  132 (176)
T TIGR01221       132 T  132 (176)
T ss_pred             C
Confidence            3

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=96.41  E-value=0.0094  Score=58.47  Aligned_cols=48  Identities=13%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             ceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186          345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK  399 (436)
Q Consensus       345 am~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~  399 (436)
                      ....|||| +..|+.||++|++.+.+   +|+. +  .+.+||+++||.|..|..
T Consensus        34 ~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~~-~--~l~~g~l~~i~p~~~H~~   81 (278)
T PRK10296         34 SVSGLHQH-DYYEFTLVLTGRYYQEI---NGKR-V--LLERGDFVFIPLGSHHQS   81 (278)
T ss_pred             cCCCCccc-ccEEEEEEEeceEEEEE---CCEE-E--EECCCcEEEeCCCCccce
Confidence            35579999 57799999999999877   3333 3  599999999999999965

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=96.40  E-value=0.019  Score=52.00  Aligned_cols=65  Identities=20%  Similarity=0.153  Sum_probs=43.7

Q ss_pred             EEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeC
Q 046186           71 RHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALP  150 (436)
Q Consensus        71 r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iP  150 (436)
                      .+.=.|+.-.--|+.+++|++|-++|    ...+.++..|                        ..|...+++||+|.+|
T Consensus        37 mvVGGPN~R~DyHine~eE~FyQ~kG----~m~Lkv~e~g------------------------~~kdi~I~EGe~fLLP   88 (151)
T PF06052_consen   37 MVVGGPNQRTDYHINETEEFFYQLKG----DMCLKVVEDG------------------------KFKDIPIREGEMFLLP   88 (151)
T ss_dssp             EEEESSB--SSEEE-SS-EEEEEEES-----EEEEEEETT------------------------EEEEEEE-TTEEEEE-
T ss_pred             EEEcCCCCCCccccCCcceEEEEEeC----cEEEEEEeCC------------------------ceEEEEeCCCcEEecC
Confidence            45556777777788889999999999    9999988653                        2346899999999999


Q ss_pred             CCCeEEEeccCCC
Q 046186          151 AGVAHWCYNEGST  163 (436)
Q Consensus       151 aG~~h~~~N~g~e  163 (436)
                      ++++|.-.-..++
T Consensus        89 ~~vpHsP~R~~~t  101 (151)
T PF06052_consen   89 ANVPHSPQRPADT  101 (151)
T ss_dssp             TT--EEEEE-TT-
T ss_pred             CCCCCCCcCCCCc
Confidence            9999998765444

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=96.33  E-value=0.029  Score=52.41  Aligned_cols=73  Identities=14%  Similarity=0.088  Sum_probs=55.1

Q ss_pred             cCCceecccccCCC---cEEEEEEeeeEEEEEEeCCCC-----eEEEEEecCcc--EEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNLNA---HSIMYAISGSCHVQVVDSYGR-----SVYDGEVRRGQ--IMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~~A---~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~Gd--v~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|.+|+|..-   +++++|++|+...=+||-.-.     +.....|.+++  .++||+|++|-..+-+++..++..
T Consensus        51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~  130 (176)
T PF00908_consen   51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK  130 (176)
T ss_dssp             ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred             cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence            45999999999886   789999999999999996421     24566677765  899999999988777666665554


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      -++
T Consensus       131 ~t~  133 (176)
T PF00908_consen  131 VTN  133 (176)
T ss_dssp             ESS
T ss_pred             cCC
Confidence            443

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=96.32  E-value=0.009  Score=58.66  Aligned_cols=53  Identities=13%  Similarity=0.083  Sum_probs=42.4

Q ss_pred             CceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC
Q 046186          344 NAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG  402 (436)
Q Consensus       344 gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag  402 (436)
                      +....||||..-.++.|+++|.+.+.+=   |.   ...+.+||+++||.+-+|.....
T Consensus        33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~---~~---~~~l~~g~~~ii~~~~~H~~~~~   85 (287)
T TIGR02297        33 GRNMPVHFHDRYYQLHYLTEGSIALQLD---EH---EYSEYAPCFFLTPPSVPHGFVTD   85 (287)
T ss_pred             CCCCCCcccccceeEEEEeeCceEEEEC---CE---EEEecCCeEEEeCCCCccccccC
Confidence            4568899997678999999999986653   22   34599999999999999987543

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=96.11  E-value=0.11  Score=54.45  Aligned_cols=44  Identities=14%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             CCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC
Q 046186          354 NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG  403 (436)
Q Consensus       354 ~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~  403 (436)
                      ....|+.|++|++.+.  + .|.. +  .|++|++++||++...+...++
T Consensus       338 ~~~~Illv~~G~~~i~--~-~~~~-~--~l~~G~~~fipa~~~~~~~~g~  381 (389)
T PRK15131        338 QSAAILFCVEGEAVLW--K-GEQQ-L--TLKPGESAFIAANESPVTVSGH  381 (389)
T ss_pred             CCcEEEEEEcceEEEE--e-CCeE-E--EECCCCEEEEeCCCccEEEecc
Confidence            4569999999999885  2 2333 3  4999999999999877665554

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=96.05  E-value=0.026  Score=54.28  Aligned_cols=71  Identities=8%  Similarity=0.082  Sum_probs=57.1

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-CcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-e~~~~l~f  411 (436)
                      +..+..+++.||+-+..|.| ...|+.+|++|.-    .+..      ..+.+||++..|.+..|...+.. +++..++.
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f----~de~------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v  194 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAF----SDET------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV  194 (215)
T ss_pred             CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEE----EcCC------CccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence            35678999999999999999 6669999999994    3432      23789999999999999986664 66877776


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      ...
T Consensus       195 ~da  197 (215)
T TIGR02451       195 LDA  197 (215)
T ss_pred             ecC
Confidence            543

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.01  E-value=0.038  Score=58.08  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=18.7

Q ss_pred             ecCCceecccccCCC-cEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEE
Q 046186          341 LHRNAMMVPHWNLNA-HSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVV  398 (436)
Q Consensus       341 L~~gam~~PHwh~~A-~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~  398 (436)
                      ...+.++.|.+|.|- +|.++.+.|.-...-          ..+.+|.+=.=|.+.+|=
T Consensus       316 v~e~tfrpPyyHrNv~sE~mg~i~G~y~a~~----------~gf~pGg~SLH~~~~pHG  364 (424)
T PF04209_consen  316 VAEHTFRPPYYHRNVMSEFMGLIRGNYDASR----------DGFEPGGISLHPCGTPHG  364 (424)
T ss_dssp             --TTS--S---B--SSEEEEEEEE---------------------TT-EEEE-TT--B-
T ss_pred             ccCCCccCCCCCcceeeeeeeeecccccccc----------CCcCCCceeccCCCCCCC
Confidence            445899999999994 577777777643321          237799999999999885

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=95.99  E-value=0.017  Score=50.31  Aligned_cols=43  Identities=21%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEE
Q 046186          351 WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVV  398 (436)
Q Consensus       351 wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~  398 (436)
                      |+-..+|..|+++|++.++  ..+|+. ..  +++||+||||+||.-.
T Consensus        59 ~~y~~~E~chil~G~v~~T--~d~Ge~-v~--~~aGD~~~~~~G~~g~  101 (116)
T COG3450          59 VTYDEDEFCHILEGRVEVT--PDGGEP-VE--VRAGDSFVFPAGFKGT  101 (116)
T ss_pred             EEcccceEEEEEeeEEEEE--CCCCeE-EE--EcCCCEEEECCCCeEE
Confidence            3334689999999988776  333554 43  9999999999999743

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=95.95  E-value=0.043  Score=50.03  Aligned_cols=71  Identities=8%  Similarity=0.072  Sum_probs=48.6

Q ss_pred             ceEEEEEEecCCceecCeee-cCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFS-NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h-~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .|++..++|+...   .-|. +.+|+-||++|    +..+.+  .                          .++...++|
T Consensus        76 ~l~~Gf~~le~~~---f~wtl~YDEi~~VlEG----~L~i~~--~--------------------------G~~~~A~~G  120 (152)
T PF06249_consen   76 RLSAGFMELEKTS---FPWTLTYDEIKYVLEG----TLEISI--D--------------------------GQTVTAKPG  120 (152)
T ss_dssp             SSEEEEEEEEEEE---EEEE-SSEEEEEEEEE----EEEEEE--T--------------------------TEEEEEETT
T ss_pred             ceeeEEEEEeCCC---ccEEeecceEEEEEEe----EEEEEE--C--------------------------CEEEEEcCC
Confidence            4777778888732   3465 59999999999    766652  1                          357899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      ||++||+|..--+.-  ...+.++.+..+
T Consensus       121 Dvi~iPkGs~I~fst--~~~a~~~Yv~yP  147 (152)
T PF06249_consen  121 DVIFIPKGSTITFST--PDYARFFYVTYP  147 (152)
T ss_dssp             -EEEE-TT-EEEEEE--EEEEEEEEEEES
T ss_pred             cEEEECCCCEEEEec--CCCEEEEEEECC
Confidence            999999998876633  235666666553

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=95.89  E-value=0.038  Score=50.41  Aligned_cols=59  Identities=20%  Similarity=0.396  Sum_probs=43.5

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKR  400 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~  400 (436)
                      .|++..+.|+..   ..-|.-+=+|+-||++|+..+.  + +|++ +.  .++|||++||+|--....
T Consensus        76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~--~-~G~~-~~--A~~GDvi~iPkGs~I~fs  134 (152)
T PF06249_consen   76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEIS--I-DGQT-VT--AKPGDVIFIPKGSTITFS  134 (152)
T ss_dssp             SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEE--E-TTEE-EE--EETT-EEEE-TT-EEEEE
T ss_pred             ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEE--E-CCEE-EE--EcCCcEEEECCCCEEEEe
Confidence            688999999874   4569999999999999987665  3 3665 44  689999999999765553

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=95.86  E-value=0.036  Score=50.30  Aligned_cols=68  Identities=26%  Similarity=0.507  Sum_probs=50.1

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWI  409 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l  409 (436)
                      .|++..+...+   ..--|..+=+|+.||++|+..|.+-   |.++.   -.+|||++||+|--.-+ ..++-.+.|+
T Consensus        99 ~l~aG~m~~~~---~tf~wtl~yDe~d~VlEGrL~V~~~---g~tv~---a~aGDvifiPKgssIefst~gea~flyv  167 (176)
T COG4766          99 RLGAGLMEMKN---TTFPWTLNYDEIDYVLEGRLHVRID---GRTVI---AGAGDVIFIPKGSSIEFSTTGEAKFLYV  167 (176)
T ss_pred             ccccceeeecc---ccCcceecccceeEEEeeeEEEEEc---CCeEe---cCCCcEEEecCCCeEEEeccceEEEEEE
Confidence            56777778777   5556888999999999999888764   45543   47999999999988666 3333333333

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=95.77  E-value=0.06  Score=51.24  Aligned_cols=66  Identities=11%  Similarity=0.196  Sum_probs=49.0

Q ss_pred             EEEEEecC-CceecccccCCCcEEEEEEeeeEEEEEEeCCC----------------------------------CeEEE
Q 046186          336 AERGLLHR-NAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG----------------------------------RSVYD  380 (436)
Q Consensus       336 ~~~v~L~~-gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G----------------------------------~~~~~  380 (436)
                      ...+-|.+ |+....|+.+ .+-|..++.|+=++.++.|.-                                  ...+.
T Consensus       132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~  210 (251)
T PF13621_consen  132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE  210 (251)
T ss_dssp             EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred             ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence            44566655 7788899988 678999999999999999841                                  02578


Q ss_pred             EEecCccEEEEcCCCEEEEEeC
Q 046186          381 GEVRRGQIMVVPQNFAVVKRAG  402 (436)
Q Consensus       381 ~~l~~Gdv~vVP~g~~h~~~ag  402 (436)
                      .+|++||+++||.||.|.+.+.
T Consensus       211 ~~l~pGD~LfiP~gWwH~V~~~  232 (251)
T PF13621_consen  211 VVLEPGDVLFIPPGWWHQVENL  232 (251)
T ss_dssp             EEEETT-EEEE-TT-EEEEEES
T ss_pred             EEECCCeEEEECCCCeEEEEEc
Confidence            8899999999999999999666

...

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=95.68  E-value=0.14  Score=45.35  Aligned_cols=95  Identities=15%  Similarity=0.005  Sum_probs=50.8

Q ss_pred             eecCCcEEEEeCCC-CccccccceEEEEEE-ecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCC
Q 046186           45 VECEAGVVETWDPG-HEQFQCAGVAVVRHT-IRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG  121 (436)
Q Consensus        45 ~~se~G~~e~~~~~-~p~l~~~gv~~~r~~-i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~  121 (436)
                      +..+-|.+.+.... ...+.-  -++..+. ..+|.....|+|. ..++++|++|    +..+.+-+..           
T Consensus        11 ~~D~RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~G----s~~v~~~d~~-----------   73 (131)
T PF05523_consen   11 ISDERGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSG----SFKVVLDDGR-----------   73 (131)
T ss_dssp             EEETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-----EEEEEE-SS-----------
T ss_pred             eeCCCCcEEEEeccCCCCCCc--cEEEEEEcCCCCCcccccccccccEEEEEEeC----EEEEEEecCC-----------
Confidence            55667876555433 222321  2344443 4444459999998 9999999999    8888753221           


Q ss_pred             CCCccCCcccccccceeeeeccC-cEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          122 GFGESAGRSQQDSHQKIRRFRQG-DIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       122 ~~~~~~~~~~~d~~~k~~~l~~G-Dv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                                   ..+...|..- ..+.||+|+.|-+.|.++. ++++.+
T Consensus        74 -------------~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~  109 (131)
T PF05523_consen   74 -------------EEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVL  109 (131)
T ss_dssp             --------------EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEE
T ss_pred             -------------CcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEE
Confidence                         1235666554 5999999999999998766 665553

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK13503 transcriptional activator RhaS; Provisional

Probab=95.44  E-value=0.028  Score=54.79  Aligned_cols=54  Identities=13%  Similarity=0.079  Sum_probs=42.5

Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG  402 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag  402 (436)
                      .+.....+||| +..|++||++|.+.+.+=+.      ...+++||+++||.+-+|...+.
T Consensus        23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~------~~~l~~g~~~~i~~~~~h~~~~~   76 (278)
T PRK13503         23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ------PYTLSGGTVCFVRDHDRHLYEHT   76 (278)
T ss_pred             Ccccccccccc-CceeEEEEecCceeeEecCC------cccccCCcEEEECCCccchhhhc
Confidence            34456789999 66799999999999876542      23499999999999999976333

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.29  E-value=0.031  Score=55.88  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=72.6

Q ss_pred             cccccccC-CCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCC
Q 046186           33 INNLEALE-PNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGY  111 (436)
Q Consensus        33 ~~~l~a~e-P~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~  111 (436)
                      +++|..++ |+.   -+|-.+++.++..-+---.-|++...-|.||....+|-|....|+=|.+|    +|.+-|     
T Consensus       229 L~~la~~e~~dp---~dG~~~ryvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eG----sg~~~I-----  296 (351)
T COG3435         229 LERLARLEEPDP---FDGYKMRYVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEG----SGYTII-----  296 (351)
T ss_pred             HHHHHhccCCCC---CCcceEEEecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEec----ceeEEE-----
Confidence            34555544 432   24555677664321111123455566788888999999999999999999    998865     


Q ss_pred             CCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          112 PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       112 ~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                                             ..+.+...+||+|+||.=.-|-..|. .++++++|+-|
T Consensus       297 -----------------------g~~rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsfsD  333 (351)
T COG3435         297 -----------------------GGERFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSFSD  333 (351)
T ss_pred             -----------------------CCEEeeccCCCEEEccCcceeecccC-CcceEEEecCC
Confidence                                   13468999999999999888877774 67788877544

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=95.26  E-value=0.32  Score=49.01  Aligned_cols=45  Identities=16%  Similarity=0.358  Sum_probs=33.1

Q ss_pred             CCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC
Q 046186          353 LNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG  403 (436)
Q Consensus       353 ~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~  403 (436)
                      .+...+++|++|++++..   .+.   ...|++|+.++||++...+...++
T Consensus       251 ~~~~~il~v~~G~~~i~~---~~~---~~~l~~G~~~~ipa~~~~~~i~g~  295 (302)
T TIGR00218       251 QQSALILSVLEGSGRIKS---GGK---TLPLKKGESFFIPAHLGPFTIEGE  295 (302)
T ss_pred             CCCcEEEEEEcceEEEEE---CCE---EEEEecccEEEEccCCccEEEEee
Confidence            346789999999998852   222   234899999999999865555443

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.24  E-value=0.11  Score=52.85  Aligned_cols=74  Identities=9%  Similarity=0.170  Sum_probs=49.6

Q ss_pred             ceEEEEEecCCc--eecccccCCCcEEEEEEeeeEEEEEEeCCC-----------------CeEEEEEecCccEEEEcCC
Q 046186          334 LSAERGLLHRNA--MMVPHWNLNAHSIMYAISGSCHVQVVDSYG-----------------RSVYDGEVRRGQIMVVPQN  394 (436)
Q Consensus       334 ls~~~v~L~~ga--m~~PHwh~~A~ei~yV~~G~grv~vv~~~G-----------------~~~~~~~l~~Gdv~vVP~g  394 (436)
                      ...+.+.++|++  =+.|||-.. +-++.=+.|+=+.+|..+..                 ...++.+|++|||+|||+|
T Consensus       113 ~~~~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG  191 (319)
T PF08007_consen  113 PVGANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRG  191 (319)
T ss_dssp             -EEEEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT
T ss_pred             ccceEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCC
Confidence            356678899999  999999853 35556688888899988421                 1256788999999999999


Q ss_pred             CEEEEEeCCCcEEE
Q 046186          395 FAVVKRAGGAEFEW  408 (436)
Q Consensus       395 ~~h~~~ag~e~~~~  408 (436)
                      ++|.-.+.+..+.+
T Consensus       192 ~~H~~~~~~~S~hl  205 (319)
T PF08007_consen  192 WWHQAVTTDPSLHL  205 (319)
T ss_dssp             -EEEEEESS-EEEE
T ss_pred             ccCCCCCCCCceEE
Confidence            99998776655555

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=95.03  E-value=0.091  Score=47.63  Aligned_cols=55  Identities=24%  Similarity=0.407  Sum_probs=35.3

Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK  399 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~  399 (436)
                      .||.=.-=|.++ +-||.|-++|...+.|++. |.. -+-.+++||+|..|.+-||.=
T Consensus        41 GPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~-g~~-kdi~I~EGe~fLLP~~vpHsP   95 (151)
T PF06052_consen   41 GPNQRTDYHINE-TEEFFYQLKGDMCLKVVED-GKF-KDIPIREGEMFLLPANVPHSP   95 (151)
T ss_dssp             SSB--SSEEE-S-S-EEEEEEES-EEEEEEET-TEE-EEEEE-TTEEEEE-TT--EEE
T ss_pred             CCCCCCccccCC-cceEEEEEeCcEEEEEEeC-Cce-EEEEeCCCcEEecCCCCCCCC
Confidence            344433334442 4589999999999999995 443 466799999999999999985

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=94.88  E-value=0.14  Score=49.28  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             EEEEeCCCCCCccccccceEEEEEecCCceeccc-ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCC
Q 046186          317 HITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPH-WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF  395 (436)
Q Consensus       317 ~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PH-wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~  395 (436)
                      +.+.++++++.    -||-+..+.+.|||...=- .|--- .=+||++|++.-..=.    .  --.|++||.+..=+..
T Consensus       169 ~attv~P~d~r----~Dmhv~ivsFePGa~ip~aEtHvmE-HGlyvLeGk~vYrLn~----d--wv~V~aGD~mwm~A~c  237 (264)
T COG3257         169 IATTVLPKELR----FDMHVHIVSFEPGASIPYAETHVME-HGLYVLEGKGVYRLNN----N--WVPVEAGDYIWMGAYC  237 (264)
T ss_pred             EEEeeCccccC----cceEEEEEEecCCcccchhhhhhhh-cceEEEecceEEeecC----c--eEEeecccEEEeeccC
Confidence            34445555542    3888999999999875321 22222 2489999999776532    1  2359999999999999


Q ss_pred             EEEEEeC-CCcEEEEEEEecCC
Q 046186          396 AVVKRAG-GAEFEWISFKTNDN  416 (436)
Q Consensus       396 ~h~~~ag-~e~~~~l~f~~s~~  416 (436)
                      |-+--|+ ...+.+|.++.-.+
T Consensus       238 pQacyagG~g~frYLlyKDvNR  259 (264)
T COG3257         238 PQACYAGGRGAFRYLLYKDVNR  259 (264)
T ss_pred             hhhhccCCCCceEEEEEecccc
Confidence            9776555 57888888875443

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=94.56  E-value=0.054  Score=49.73  Aligned_cols=55  Identities=18%  Similarity=0.254  Sum_probs=45.4

Q ss_pred             ceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186          345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA  401 (436)
Q Consensus       345 am~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a  401 (436)
                      ..+++|-|+.. ||-||+.|+|..-|-+-+++= +.--++.||++|+|+|--|-...
T Consensus        84 ~FfEEhlh~de-eiR~il~GtgYfDVrd~dd~W-IRi~vekGDlivlPaGiyHRFTt  138 (179)
T KOG2107|consen   84 SFFEEHLHEDE-EIRYILEGTGYFDVRDKDDQW-IRIFVEKGDLIVLPAGIYHRFTT  138 (179)
T ss_pred             HHHHHhcCchh-heEEEeecceEEeeccCCCCE-EEEEEecCCEEEecCcceeeeec
Confidence            46889999765 999999999999999988653 44448999999999998876533

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=94.56  E-value=0.29  Score=45.72  Aligned_cols=100  Identities=20%  Similarity=0.192  Sum_probs=61.3

Q ss_pred             cCCCceeecCCcE-EEEeCCC-Cc--cccccce-EEEEEEecCCceecCeeecCC----ceEEEEecccceEEEEEeeCC
Q 046186           39 LEPNNRVECEAGV-VETWDPG-HE--QFQCAGV-AVVRHTIRQKGLLLPQFSNSP----QLVYILQAYTYRRGSHGDPFP  109 (436)
Q Consensus        39 ~eP~~~~~se~G~-~e~~~~~-~p--~l~~~gv-~~~r~~i~pg~l~~Ph~h~a~----ei~yV~~G~~~~~g~~g~v~p  109 (436)
                      .+|. ++.-+-|. +|.+..+ +.  .+.. .+ -...-.-.+|.+..+||+..+    ++++|++|    +...-+|+.
T Consensus        12 i~~~-~~~D~RG~f~e~f~~~~~~~~~~~~-~~~q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G----~i~dV~vDl   85 (176)
T PF00908_consen   12 IEPK-VFPDERGYFMETFREDEFAEAGLPP-EFVQDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRG----EIFDVAVDL   85 (176)
T ss_dssp             EEEE-EEEETTEEEEEEEEHHHHHHHHSST--EEEEEEEEEETTBEEEEEEESTTT-EEEEEEEEES----EEEEEEEE-
T ss_pred             EECc-eeccCCEeEehHhhhHHHHHhcccc-ccCceEEEEccccEEEEEEEecCCCCCCcEEEEecC----eEEEEEEEC
Confidence            4443 35556665 5777643 11  1111 11 122223345889999999854    99999999    888777763


Q ss_pred             --CCCCcccCCCCCCCCccCCcccccccce--eeeeccCc--EEEeCCCCeEEEeccCCCcE
Q 046186          110 --GYPETYQSPQQGGFGESAGRSQQDSHQK--IRRFRQGD--IFALPAGVAHWCYNEGSTPV  165 (436)
Q Consensus       110 --g~~et~~~~~~~~~~~~~~~~~~d~~~k--~~~l~~GD--v~~iPaG~~h~~~N~g~e~l  165 (436)
                        +.| ||                    .+  ...|.+.+  .++||+|++|-.++..++-.
T Consensus        86 R~~Sp-Tf--------------------g~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~  126 (176)
T PF00908_consen   86 RKGSP-TF--------------------GKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAE  126 (176)
T ss_dssp             BTTST-TT--------------------T-EEEEEEETTT--EEEE-TTEEEEEEESSSEEE
T ss_pred             CCCCC-CC--------------------CEEEEEEeCccccCEEEeCCcceeeEEeccCceE
Confidence              211 22                    22  46676654  79999999999999877633

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=94.46  E-value=0.3  Score=46.45  Aligned_cols=92  Identities=15%  Similarity=0.080  Sum_probs=51.9

Q ss_pred             EEEEEecC-CceecCeeecCCceEEEEecccceEEEEEeeCCCCCC-cccCCCCCC-CC----------ccCCccccccc
Q 046186           69 VVRHTIRQ-KGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPE-TYQSPQQGG-FG----------ESAGRSQQDSH  135 (436)
Q Consensus        69 ~~r~~i~p-g~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e-t~~~~~~~~-~~----------~~~~~~~~d~~  135 (436)
                      ...+-|.+ |+....|+-..+-+..+++|    +=++-++.|.... -+..+...+ ..          ...-....+.+
T Consensus       132 ~~~l~ig~~gs~t~lH~D~~~n~~~~i~G----~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~  207 (251)
T PF13621_consen  132 SSNLWIGPPGSFTPLHYDPSHNLLAQIRG----RKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAP  207 (251)
T ss_dssp             EEEEEEE-TTEEEEEEE-SSEEEEEEEES----EEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--
T ss_pred             ccEEEEeCCCceeeeeECchhhhhhccCC----CEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCc
Confidence            44566666 45677788778999999999    8888888775322 222111000 00          00001111112


Q ss_pred             ceeeeeccCcEEEeCCCCeEEEeccCCCc
Q 046186          136 QKIRRFRQGDIFALPAGVAHWCYNEGSTP  164 (436)
Q Consensus       136 ~k~~~l~~GDv~~iPaG~~h~~~N~g~e~  164 (436)
                      -....|++||+++||+|.-|.+.|..+++
T Consensus       208 ~~~~~l~pGD~LfiP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  208 PYEVVLEPGDVLFIPPGWWHQVENLSDDD  236 (251)
T ss_dssp             EEEEEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred             eeEEEECCCeEEEECCCCeEEEEEcCCCC
Confidence            23589999999999999999999984333

...

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=94.30  E-value=0.1  Score=45.54  Aligned_cols=58  Identities=21%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             eEEEEEEecCCceecCeee-cCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           67 VAVVRHTIRQKGLLLPQFS-NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        67 v~~~r~~i~pg~l~~Ph~h-~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      +....-.-.||..   +++ +..|..|+|+|    ++++.   |                        ...+..++++||
T Consensus        45 ~~~GiWe~TpG~~---r~~y~~~E~chil~G----~v~~T---~------------------------d~Ge~v~~~aGD   90 (116)
T COG3450          45 VETGIWECTPGKF---RVTYDEDEFCHILEG----RVEVT---P------------------------DGGEPVEVRAGD   90 (116)
T ss_pred             eeEeEEEecCccc---eEEcccceEEEEEee----EEEEE---C------------------------CCCeEEEEcCCC
Confidence            4455555666654   233 36999999999    88776   2                        124578999999


Q ss_pred             EEEeCCCCeEEEe
Q 046186          146 IFALPAGVAHWCY  158 (436)
Q Consensus       146 v~~iPaG~~h~~~  158 (436)
                      ++++|+|..--+.
T Consensus        91 ~~~~~~G~~g~W~  103 (116)
T COG3450          91 SFVFPAGFKGTWE  103 (116)
T ss_pred             EEEECCCCeEEEE
Confidence            9999999875543

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=94.16  E-value=0.55  Score=43.88  Aligned_cols=109  Identities=15%  Similarity=0.080  Sum_probs=67.3

Q ss_pred             ccccccCCCceeecCCc-EEEEeCCC-Ccc------ccccceEEEEEEecCCceecCeeec---CCceEEEEecccceEE
Q 046186           34 NNLEALEPNNRVECEAG-VVETWDPG-HEQ------FQCAGVAVVRHTIRQKGLLLPQFSN---SPQLVYILQAYTYRRG  102 (436)
Q Consensus        34 ~~l~a~eP~~~~~se~G-~~e~~~~~-~p~------l~~~gv~~~r~~i~pg~l~~Ph~h~---a~ei~yV~~G~~~~~g  102 (436)
                      .-+...+|.. +.-+-| .+|.+..+ +..      +.-.++++    -.+|.+...|+|.   ..++++|++|    +.
T Consensus         8 ~Gv~~i~~~~-~~D~RG~f~e~f~~~~~~~~g~~~~~~Q~n~S~----S~~gvlRGlH~q~~~~q~Klv~c~~G----~i   78 (176)
T TIGR01221         8 PDVLLIEPRV-FGDERGFFMETYNDEAFQEQGIPVRFVQDNHSK----SYKGVLRGLHYQRPHPQGKLVRVLRG----EV   78 (176)
T ss_pred             CCEEEEeCcE-EeeCCCCEEeeeehhhHHHcCCCCCcceeEEEE----ecCCEEEEEEECCCCCCceEEEEccC----CE
Confidence            3344455654 444555 46777653 221      21223333    3678899999982   6899999999    88


Q ss_pred             EEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          103 SHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       103 ~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      ..-+|+.-- +-||.                 .+ ....|.+  +..++||+|++|-.++.+++ ..++..
T Consensus        79 ~dV~VDlR~~SpTfG-----------------~~-~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~  130 (176)
T TIGR01221        79 FDVAVDLRRNSPTFG-----------------KW-VGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK  130 (176)
T ss_pred             EEEEEECCCCcCCCC-----------------eE-EEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence            877776510 11221                 01 1345554  67999999999999998765 544443

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=93.72  E-value=0.33  Score=40.63  Aligned_cols=73  Identities=23%  Similarity=0.281  Sum_probs=40.1

Q ss_pred             EEecCCceecccccCCCc-EEEEEE---eeeEEEEEEeCCCC-----------------eEEEEEecCccEEEEcCCCEE
Q 046186          339 GLLHRNAMMVPHWNLNAH-SIMYAI---SGSCHVQVVDSYGR-----------------SVYDGEVRRGQIMVVPQNFAV  397 (436)
Q Consensus       339 v~L~~gam~~PHwh~~A~-ei~yV~---~G~grv~vv~~~G~-----------------~~~~~~l~~Gdv~vVP~g~~h  397 (436)
                      ...++|+..++|.|+++. .-+|.+   .+.+.+.+.++++.                 ..+.-..++||++++|.-+.|
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H   84 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH   84 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence            356799999999999986 555555   35566777777531                 144556899999999999999


Q ss_pred             EE--EeCCCcEEEEEE
Q 046186          398 VK--RAGGAEFEWISF  411 (436)
Q Consensus       398 ~~--~ag~e~~~~l~f  411 (436)
                      ..  +.+++.=.-|+|
T Consensus        85 ~v~p~~~~~~Risisf  100 (101)
T PF13759_consen   85 GVPPNNSDEERISISF  100 (101)
T ss_dssp             EE----SSS-EEEEEE
T ss_pred             eccCcCCCCCEEEEEc
Confidence            86  444433333433

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=93.65  E-value=0.45  Score=44.42  Aligned_cols=104  Identities=18%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             ccccCCCceeecCCcE-EEEeCCC-Cc------cccccceEEEEEEecCCceecCeeec-C-CceEEEEecccceEEEEE
Q 046186           36 LEALEPNNRVECEAGV-VETWDPG-HE------QFQCAGVAVVRHTIRQKGLLLPQFSN-S-PQLVYILQAYTYRRGSHG  105 (436)
Q Consensus        36 l~a~eP~~~~~se~G~-~e~~~~~-~p------~l~~~gv~~~r~~i~pg~l~~Ph~h~-a-~ei~yV~~G~~~~~g~~g  105 (436)
                      +-..+|. ++.-+-|. +|.+... +.      .+.-.++++..    ||-+...|||. - .+++.|++|    +...-
T Consensus        11 v~~~~~~-~~~D~RG~F~E~~~~~~~~~~~~~~~~~Q~n~S~S~----~GvlRGlHyq~~~q~klv~~v~G----~v~dv   81 (173)
T COG1898          11 VLIIEPK-VFGDERGFFTETFKAEEFSTLGLPLDFVQDNHSFSY----PGVLRGLHYQHKPQGKLVRVVSG----KVFDV   81 (173)
T ss_pred             eEEECCc-ccccccceeeehhhhhhhhhccCccccccceEEEec----CCeeEEEEcccCCCCeEEEEecC----eEEEE
Confidence            3344454 35556665 4666521 11      12223556554    99999999998 4 699999999    88877


Q ss_pred             eeCC--CCCCcccCCCCCCCCccCCcccccccce--eeeec--cCcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          106 DPFP--GYPETYQSPQQGGFGESAGRSQQDSHQK--IRRFR--QGDIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       106 ~v~p--g~~et~~~~~~~~~~~~~~~~~~d~~~k--~~~l~--~GDv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      +|+-  +.| ||                    .+  ...|.  -.-.+.||+|++|-++|.+++..++..
T Consensus        82 ~vDlR~~Sp-Ty--------------------g~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~  130 (173)
T COG1898          82 AVDLRKDSP-TY--------------------GKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK  130 (173)
T ss_pred             EEEccCCCC-Cc--------------------ceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence            7764  212 33                    22  23343  347899999999999999988644333

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=93.58  E-value=0.55  Score=42.79  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=49.9

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      .+++......+  -..|-+.+.+|+-||++|    +..+-+  .|                          +.-.-++||
T Consensus        99 ~l~aG~m~~~~--~tf~wtl~yDe~d~VlEG----rL~V~~--~g--------------------------~tv~a~aGD  144 (176)
T COG4766          99 RLGAGLMEMKN--TTFPWTLNYDEIDYVLEG----RLHVRI--DG--------------------------RTVIAGAGD  144 (176)
T ss_pred             ccccceeeecc--ccCcceecccceeEEEee----eEEEEE--cC--------------------------CeEecCCCc
Confidence            35666667777  455666779999999999    766643  21                          245679999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      |++||.|..--+--.|.  +.++.+.-
T Consensus       145 vifiPKgssIefst~ge--a~flyvty  169 (176)
T COG4766         145 VIFIPKGSSIEFSTTGE--AKFLYVTY  169 (176)
T ss_pred             EEEecCCCeEEEeccce--EEEEEEEc
Confidence            99999998876654443  66665544

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=92.93  E-value=0.12  Score=53.20  Aligned_cols=78  Identities=17%  Similarity=0.217  Sum_probs=55.6

Q ss_pred             CCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEE--EeC----------------CCCeEEEEEecCcc
Q 046186          326 LPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQV--VDS----------------YGRSVYDGEVRRGQ  387 (436)
Q Consensus       326 ~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~v--v~~----------------~G~~~~~~~l~~Gd  387 (436)
                      +|.-+.=++-++  ...+||=+.|||-+..   +|.++|.|+-..  --.                .+....+..+.+||
T Consensus       113 lP~wr~ddiMIS--~a~~GGgvg~H~D~YD---VfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGD  187 (383)
T COG2850         113 LPDWRIDDIMIS--FAAPGGGVGPHFDQYD---VFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGD  187 (383)
T ss_pred             CccccccceEEE--EecCCCccCccccchh---eeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCc
Confidence            444443345555  6789999999998654   678888876542  211                11235678899999


Q ss_pred             EEEEcCCCEEEEEeCCCcEEE
Q 046186          388 IMVVPQNFAVVKRAGGAEFEW  408 (436)
Q Consensus       388 v~vVP~g~~h~~~ag~e~~~~  408 (436)
                      |+|||.+|+|.=+|-.+.+.|
T Consensus       188 iLYiPp~~~H~gvae~dc~ty  208 (383)
T COG2850         188 ILYIPPGFPHYGVAEDDCMTY  208 (383)
T ss_pred             eeecCCCCCcCCcccccccce
Confidence            999999999998888666666

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=92.88  E-value=0.71  Score=42.35  Aligned_cols=82  Identities=17%  Similarity=0.174  Sum_probs=50.2

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      -..+....|.||+.+.||.-+....     =    +..++++.| .+..               .. -...+.+..++|+
T Consensus        79 ~~~~~~s~l~pg~~I~pH~d~~~~~-----l----R~Hl~L~~p-~~~~---------------~~-~v~~~~~~w~~G~  132 (163)
T PF05118_consen   79 LGRVRFSRLPPGTHIKPHRDPTNLR-----L----RLHLPLIVP-NPGC---------------YI-RVGGETRHWREGE  132 (163)
T ss_dssp             CEEEEEEEEECTEEEEEE-SS-TTE-----E----EEEEEEC---STTE---------------EE-EETTEEEB--CTE
T ss_pred             hhhEEEEEECCCCEECCeeCCCCcc-----e----EEEEEEEcC-CCCe---------------EE-EECCeEEEeccCc
Confidence            3457778899999999999764433     1    677787765 1110               00 0123568999999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      ++++-....|+..|.|+++=+ +.++|.-
T Consensus       133 ~~~fD~s~~H~~~N~~~~~Rv-~L~vD~~  160 (163)
T PF05118_consen  133 CWVFDDSFEHEVWNNGDEDRV-VLIVDFW  160 (163)
T ss_dssp             EEEE-TTS-EEEEESSSS-EE-EEEEEEE
T ss_pred             EEEEeCCEEEEEEeCCCCCEE-EEEEEee
Confidence            999999999999999986433 3346643

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PF12852 Cupin_6: Cupin

Probab=92.83  E-value=0.56  Score=43.32  Aligned_cols=46  Identities=26%  Similarity=0.358  Sum_probs=36.3

Q ss_pred             CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCC
Q 046186           87 SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGS  162 (436)
Q Consensus        87 a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~  162 (436)
                      ...+.||++|    ++.+.+  ++                        .+....|++||++.+|.|.+|++....+
T Consensus        35 ~~~fh~V~~G----~~~l~~--~~------------------------~~~~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   35 GASFHVVLRG----SCWLRV--PG------------------------GGEPIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             ceEEEEEECC----eEEEEE--cC------------------------CCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence            4678899999    888874  21                        1236899999999999999999965544

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=92.83  E-value=0.15  Score=46.94  Aligned_cols=57  Identities=26%  Similarity=0.383  Sum_probs=43.4

Q ss_pred             eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee-eeeccCcEEEeCCCCeEEE
Q 046186           79 LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI-RRFRQGDIFALPAGVAHWC  157 (436)
Q Consensus        79 l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~-~~l~~GDv~~iPaG~~h~~  157 (436)
                      +..+|-|.-.||-||+.|    .|..-+=+.                       | .+=+ .-++.||.+++|||+-|-+
T Consensus        85 FfEEhlh~deeiR~il~G----tgYfDVrd~-----------------------d-d~WIRi~vekGDlivlPaGiyHRF  136 (179)
T KOG2107|consen   85 FFEEHLHEDEEIRYILEG----TGYFDVRDK-----------------------D-DQWIRIFVEKGDLIVLPAGIYHRF  136 (179)
T ss_pred             HHHHhcCchhheEEEeec----ceEEeeccC-----------------------C-CCEEEEEEecCCEEEecCcceeee
Confidence            467999999999999999    998865211                       1 1223 5679999999999999987


Q ss_pred             eccCCC
Q 046186          158 YNEGST  163 (436)
Q Consensus       158 ~N~g~e  163 (436)
                      .-+.+.
T Consensus       137 Ttt~~n  142 (179)
T KOG2107|consen  137 TTTPSN  142 (179)
T ss_pred             ecCchH
Confidence            654443

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.07  E-value=0.09  Score=55.59  Aligned_cols=67  Identities=15%  Similarity=0.264  Sum_probs=49.3

Q ss_pred             ceEEEEEecCCce--ecccccCCCcEEEEEEeeeEEEEEEeCC-------------------CCeEEEEEecCccEEEEc
Q 046186          334 LSAERGLLHRNAM--MVPHWNLNAHSIMYAISGSCHVQVVDSY-------------------GRSVYDGEVRRGQIMVVP  392 (436)
Q Consensus       334 ls~~~v~L~~gam--~~PHwh~~A~ei~yV~~G~grv~vv~~~-------------------G~~~~~~~l~~Gdv~vVP  392 (436)
                      +..+.+.|+|-+-  ++|||.-- .-++.=++|+=+..+..|.                   |.-+++..|++||++|||
T Consensus       316 ~vGaNvYLTPagSqGfaPHyDdI-eaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfP  394 (629)
T KOG3706|consen  316 LVGANVYLTPAGSQGFAPHYDDI-EAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFP  394 (629)
T ss_pred             ccccceeecCCCCCCCCCchhhh-hhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEec
Confidence            4455677776543  78999722 2345567888888888874                   334888999999999999


Q ss_pred             CCCEEEEEe
Q 046186          393 QNFAVVKRA  401 (436)
Q Consensus       393 ~g~~h~~~a  401 (436)
                      +|+.|--.+
T Consensus       395 RG~IHQA~t  403 (629)
T KOG3706|consen  395 RGTIHQADT  403 (629)
T ss_pred             Ccceeeccc
Confidence            999996533

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=91.06  E-value=1.9  Score=43.83  Aligned_cols=83  Identities=18%  Similarity=0.158  Sum_probs=43.0

Q ss_pred             EEEEEecCCc--eecCeeecCCceEEEEecccceEEEEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           69 VVRHTIRQKG--LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        69 ~~r~~i~pg~--l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      .+-+-+.|+|  -+.|||=+.+-+++=+.|    +=+..+-.+.. +..+.+...-      ..-.....-....|++||
T Consensus       115 ~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G----~K~W~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~L~pGD  184 (319)
T PF08007_consen  115 GANAYLTPPGSQGFGPHYDDHDVFVLQLEG----RKRWRLYPPPDEPAPLYSDQPF------KQLEEFEPVEEVVLEPGD  184 (319)
T ss_dssp             EEEEEEETSSBEESECEE-SSEEEEEEEES-----EEEEEE-SCCCTTTSSCE--T------TTCG--STSEEEEE-TT-
T ss_pred             ceEEEecCCCCCCccCEECCcccEEEECCc----eeEEEECCCCcccccccCCCCc------cccccCceeEEEEECCCC
Confidence            3455677777  799999887776666777    44444433211 1011100000      000000011258899999


Q ss_pred             EEEeCCCCeEEEeccC
Q 046186          146 IFALPAGVAHWCYNEG  161 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g  161 (436)
                      +++||+|+.|.....+
T Consensus       185 ~LYlPrG~~H~~~~~~  200 (319)
T PF08007_consen  185 VLYLPRGWWHQAVTTD  200 (319)
T ss_dssp             EEEE-TT-EEEEEESS
T ss_pred             EEEECCCccCCCCCCC
Confidence            9999999999999887

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=90.92  E-value=2.1  Score=36.11  Aligned_cols=68  Identities=18%  Similarity=0.255  Sum_probs=47.6

Q ss_pred             EEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          337 ERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       337 ~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      ..+.|++|+-......+.-+-++||++|++.+   +  |..   ..+.+|+++++..+-...+.+.+++++++.+.
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v---~--~~~---~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~   69 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV---G--GEE---DPLEAGQLVVLEDGDEIELTAGEEGARFLLLG   69 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE---T--TTT---EEEETTEEEEE-SECEEEEEESSSSEEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEE---C--CCc---ceECCCcEEEECCCceEEEEECCCCcEEEEEE
Confidence            35788999887755555556899999999755   2  232   45889999999977777777776888887774

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=90.37  E-value=1.9  Score=41.58  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             ceEEEEEecCCc-eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          334 LSAERGLLHRNA-MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       334 ls~~~v~L~~ga-m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++=..+.+.||| --.|--.++|-.++||++|+..+.+-+   +   +..|++|+-.++|.|-.+.. |+..++..|..|
T Consensus        61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G---~---th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~  134 (264)
T COG3257          61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEG---K---THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI  134 (264)
T ss_pred             hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcC---e---EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence            344567887776 888888889999999999999988754   3   23499999999999999887 777777777776


Q ss_pred             EecCC
Q 046186          412 KTNDN  416 (436)
Q Consensus       412 ~~s~~  416 (436)
                      .+.=.
T Consensus       135 rk~Y~  139 (264)
T COG3257         135 RKRYQ  139 (264)
T ss_pred             eecce
Confidence            65433

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=90.20  E-value=1.1  Score=44.69  Aligned_cols=73  Identities=11%  Similarity=0.065  Sum_probs=55.6

Q ss_pred             CCceeccccc-CCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCc-cEEEEcCCCEEEEEeCCCcEE-EEEEEecC
Q 046186          343 RNAMMVPHWN-LNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRG-QIMVVPQNFAVVKRAGGAEFE-WISFKTND  415 (436)
Q Consensus       343 ~gam~~PHwh-~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~G-dv~vVP~g~~h~~~ag~e~~~-~l~f~~s~  415 (436)
                      |++++.||-| +...+..-|++|+..+.+.+.+|.......+.+. +..+||.+-.|.+...+++.. ++.|+...
T Consensus        20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy~~~   95 (287)
T PRK12335         20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFYCKP   95 (287)
T ss_pred             hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEEEcc
Confidence            7888999988 5678999999999999999999876555556664 455788888888866655544 46666554

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=89.96  E-value=0.96  Score=44.53  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=37.7

Q ss_pred             CeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC
Q 046186           82 PQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG  161 (436)
Q Consensus        82 Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g  161 (436)
                      |+-.++-.+.|+++|    +|.+-+                            .++.+.+++||++.+|+|.+|.+....
T Consensus        44 ~~~~~~~~i~~~~~G----~~~~~~----------------------------~~~~~~~~~g~~i~i~p~~~h~~~~~~   91 (290)
T PRK10572         44 PLGMKGYILNLTIRG----QGVIFN----------------------------GGRAFVCRPGDLLLFPPGEIHHYGRHP   91 (290)
T ss_pred             CCCccceEEEEEEec----cEEEec----------------------------CCeeEecCCCCEEEECCCCceeeccCC
Confidence            444445678999999    888752                            134689999999999999999876654


Q ss_pred             C
Q 046186          162 S  162 (436)
Q Consensus       162 ~  162 (436)
                      +
T Consensus        92 ~   92 (290)
T PRK10572         92 D   92 (290)
T ss_pred             C
Confidence            4

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=89.89  E-value=0.51  Score=39.54  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=20.2

Q ss_pred             eeeeccCcEEEeCCCCeEEEeccCCC
Q 046186          138 IRRFRQGDIFALPAGVAHWCYNEGST  163 (436)
Q Consensus       138 ~~~l~~GDv~~iPaG~~h~~~N~g~e  163 (436)
                      ...-++||.+++|+|..|+..|.|+.
T Consensus        82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~~  107 (114)
T PF02373_consen   82 RFVQKPGEFVFIPPGAYHQVFNLGDN  107 (114)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred             cceECCCCEEEECCCceEEEEeCCce
Confidence            35669999999999999999999975

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>TIGR02466 conserved hypothetical protein

Probab=89.86  E-value=0.96  Score=43.18  Aligned_cols=74  Identities=12%  Similarity=0.121  Sum_probs=49.1

Q ss_pred             EEEecCCceecccccCCCc--EEEEEE--eeeEEEEEEeCCCC-----------------eEEEEEecCccEEEEcCCCE
Q 046186          338 RGLLHRNAMMVPHWNLNAH--SIMYAI--SGSCHVQVVDSYGR-----------------SVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       338 ~v~L~~gam~~PHwh~~A~--ei~yV~--~G~grv~vv~~~G~-----------------~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      .+.+.+|+...+|.||++.  -+.||.  .+.+.+.+.+|...                 ......-++||++++|.-+.
T Consensus       100 ~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~  179 (201)
T TIGR02466       100 VNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLR  179 (201)
T ss_pred             EEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCc
Confidence            4566899999999999984  355554  34455556555321                 11223458999999999999


Q ss_pred             EEE--EeCCCcEEEEEE
Q 046186          397 VVK--RAGGAEFEWISF  411 (436)
Q Consensus       397 h~~--~ag~e~~~~l~f  411 (436)
                      |..  +.+++.=.-|+|
T Consensus       180 H~v~p~~~~~~RISiSF  196 (201)
T TIGR02466       180 HEVPPNESEEERISVSF  196 (201)
T ss_pred             eecCCCCCCCCEEEEEE
Confidence            986  555544444555

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>PF12852 Cupin_6: Cupin

Probab=89.67  E-value=1.2  Score=41.11  Aligned_cols=43  Identities=26%  Similarity=0.440  Sum_probs=33.7

Q ss_pred             CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186          355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA  401 (436)
Q Consensus       355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a  401 (436)
                      ...+.||++|++++.+=+ .+ ..+  .|++||++++|+|.+|.+-.
T Consensus        35 ~~~fh~V~~G~~~l~~~~-~~-~~~--~L~~GDivllp~g~~H~l~~   77 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRVPG-GG-EPI--RLEAGDIVLLPRGTAHVLSS   77 (186)
T ss_pred             ceEEEEEECCeEEEEEcC-CC-CeE--EecCCCEEEEcCCCCeEeCC
Confidence            367899999999999543 22 223  39999999999999999833

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=89.27  E-value=1.7  Score=44.91  Aligned_cols=75  Identities=16%  Similarity=0.255  Sum_probs=53.6

Q ss_pred             CccccccceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCc
Q 046186          327 PVLRWIQLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAE  405 (436)
Q Consensus       327 P~L~~l~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~  405 (436)
                      |...  ..++-.+++..|.- .-|--  ....|..|++|+|.+.--.  +..   ..+++|||++||+.++..+.+.++.
T Consensus       328 Ppi~--eF~v~~~~v~~g~~~~~~~~--~~~SIllv~~G~g~l~~~t--~~~---~~v~rG~V~fI~a~~~i~~~~~sd~  398 (411)
T KOG2757|consen  328 PPIE--EFAVLETKVPTGESYKFPGV--DGPSILLVLKGSGILKTDT--DSK---ILVNRGDVLFIPANHPIHLSSSSDP  398 (411)
T ss_pred             CCCc--ceeEEEeecCCCceEEeecC--CCceEEEEEecceEEecCC--CCc---eeeccCcEEEEcCCCCceeeccCcc
Confidence            4444  67777788877643 33433  3678999999999988542  222   2489999999999999888787777


Q ss_pred             EEEEE
Q 046186          406 FEWIS  410 (436)
Q Consensus       406 ~~~l~  410 (436)
                      |...-
T Consensus       399 ~~~yr  403 (411)
T KOG2757|consen  399 FLGYR  403 (411)
T ss_pred             eeeee
Confidence            55443

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=88.35  E-value=3.1  Score=44.13  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             cceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      ||++....... .| -.-..|..+.+++|+.+|.++++=--  |.  ++  +++||+.|||+|.-+.+.-.+.....+.+
T Consensus       132 G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L~--v~pgei~VIPRG~~frv~l~~gp~rgyi~  204 (438)
T PRK05341        132 GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATEL--GV--LD--VEPGEIAVIPRGVKFRVELPDGPARGYVC  204 (438)
T ss_pred             ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec--cc--eE--ecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence            55555544444 66 55557778899999999999988444  33  33  88999999999999887654445555444


Q ss_pred             EecC
Q 046186          412 KTND  415 (436)
Q Consensus       412 ~~s~  415 (436)
                      .+..
T Consensus       205 E~~g  208 (438)
T PRK05341        205 ENYG  208 (438)
T ss_pred             EecC
Confidence            4443

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=87.72  E-value=2.9  Score=44.27  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=35.5

Q ss_pred             cCCceecccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186          342 HRNAMMVPHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV  397 (436)
Q Consensus       342 ~~gam~~PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h  397 (436)
                      .+++++.|.+|.| .+|+++.+.|.-...-          .-+.+|.+=.=|.+.+|
T Consensus       326 ~e~TfrpPyyHrNv~sEfmgli~G~y~ak~----------~gf~pGg~SLH~~~~pH  372 (438)
T PRK05341        326 AENTFRPPWFHRNVMSEFMGLIHGVYDAKA----------EGFVPGGASLHNCMSPH  372 (438)
T ss_pred             CCCccCCCCCccchhhhhhhhccccccccc----------cCcCCCeeeecCCCCCC
Confidence            7999999999998 4699988888643321          12678888888888885

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=86.27  E-value=3.8  Score=43.31  Aligned_cols=47  Identities=15%  Similarity=0.176  Sum_probs=34.6

Q ss_pred             ecCCceecccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186          341 LHRNAMMVPHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV  397 (436)
Q Consensus       341 L~~gam~~PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h  397 (436)
                      ..+++++.|.+|.| .+|+++.+.|.-...          +..+.+|.+=+=|.+.+|
T Consensus       320 vae~TfrpPyyHrN~~sEfmgli~G~y~ak----------~~gf~pGg~SlH~~~~pH  367 (429)
T TIGR01015       320 VAEKTFRPPYYHRNCMSEFMGLITGAYDAK----------EGGFVPGGGSLHNMMTPH  367 (429)
T ss_pred             CCCCccCCCCCccchhhhhhhhcccccccc----------cCCcCCCeeeecCCCCCC
Confidence            45999999999998 468888888763221          012678888888888875

Missing in human disease alkaptonuria.

>PF13464 DUF4115: Domain of unknown function (DUF4115)

Probab=86.04  E-value=5.2  Score=31.81  Aligned_cols=51  Identities=20%  Similarity=0.342  Sum_probs=42.6

Q ss_pred             EEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       361 V~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      -..|..-++|.+.+|+.+++..+++||.+-++..-+..+..|+-+..-+.+
T Consensus         4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v~v~~   54 (77)
T PF13464_consen    4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAVEVTV   54 (77)
T ss_pred             EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcEEEEE
Confidence            456889999999999999999999999999998899888888755444433

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=85.84  E-value=4.1  Score=34.98  Aligned_cols=63  Identities=22%  Similarity=0.251  Sum_probs=44.9

Q ss_pred             CceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCC--CC
Q 046186           77 KGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPA--GV  153 (436)
Q Consensus        77 g~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPa--G~  153 (436)
                      +.-+.+|-|. -+-+.||++|    +....                           |+......|++||+-.+-|  |+
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G----~~~H~---------------------------Ds~G~~~~l~~G~vq~m~AG~Gi   87 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEG----ELRHR---------------------------DSLGNRGVLRAGDVQWMTAGSGI   87 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEES----EEEEE---------------------------ETTSEEEEEETTEEEEEE-TTTE
T ss_pred             CCCCCCcCCCCceEEEEEecC----EEEEE---------------------------CCCCCeeEeCCCeEEEEeCCCCc
Confidence            5556899998 7888999999    76654                           2223346899999999888  67


Q ss_pred             eEEEeccCC-CcEEEEEE
Q 046186          154 AHWCYNEGS-TPVVAVVL  170 (436)
Q Consensus       154 ~h~~~N~g~-e~l~~v~~  170 (436)
                      .|.-.|.++ .++.++-+
T Consensus        88 ~H~E~~~~~~~~~~~lQl  105 (107)
T PF02678_consen   88 VHSERNASDGGPLHGLQL  105 (107)
T ss_dssp             EEEEEE-TSSS-EEEEEE
T ss_pred             eEEEecCCCCCeEEEEEE
Confidence            888889876 77776643

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=85.72  E-value=12  Score=33.75  Aligned_cols=82  Identities=16%  Similarity=0.187  Sum_probs=55.1

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEee-eEEEEEEeCCCCe---EEEEEecCcc--EEEEcCCCEEEE-EeCCCc
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISG-SCHVQVVDSYGRS---VYDGEVRRGQ--IMVVPQNFAVVK-RAGGAE  405 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G-~grv~vv~~~G~~---~~~~~l~~Gd--v~vVP~g~~h~~-~ag~e~  405 (436)
                      -+++-+.-|+++.+..-|-. +++|+-|...| ..++-+++++|+-   ++-.++.+|+  .+|||.|....- ..+..+
T Consensus        40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~  118 (139)
T PF06172_consen   40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD  118 (139)
T ss_dssp             S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred             cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence            45556666888887765554 78887777777 8889999999873   2333345564  689999998765 345567


Q ss_pred             EEEEEEEecC
Q 046186          406 FEWISFKTND  415 (436)
Q Consensus       406 ~~~l~f~~s~  415 (436)
                      .-+++.....
T Consensus       119 y~Lvsc~VaP  128 (139)
T PF06172_consen  119 YSLVSCTVAP  128 (139)
T ss_dssp             EEEEEEEESS
T ss_pred             EEEEEEEEcC
Confidence            7787776553

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=84.67  E-value=3.8  Score=42.40  Aligned_cols=71  Identities=15%  Similarity=0.225  Sum_probs=52.2

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      ..++...++.+|.-.---..+.+.|+.|++|    +|++..-                           ......+.+||
T Consensus       332 eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G----~g~l~~~---------------------------t~~~~~v~rG~  380 (411)
T KOG2757|consen  332 EFAVLETKVPTGESYKFPGVDGPSILLVLKG----SGILKTD---------------------------TDSKILVNRGD  380 (411)
T ss_pred             ceeEEEeecCCCceEEeecCCCceEEEEEec----ceEEecC---------------------------CCCceeeccCc
Confidence            4677888888877655556789999999999    9988631                           12357899999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEE
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAV  168 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v  168 (436)
                      |++||+.++--+ +..++++..+
T Consensus       381 V~fI~a~~~i~~-~~~sd~~~~y  402 (411)
T KOG2757|consen  381 VLFIPANHPIHL-SSSSDPFLGY  402 (411)
T ss_pred             EEEEcCCCCcee-eccCcceeee
Confidence            999999988744 3344544443

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=84.62  E-value=4.6  Score=42.36  Aligned_cols=59  Identities=12%  Similarity=0.160  Sum_probs=42.5

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      ...+.++.+..+....+.  ..+.|++|++|    ++++..  .                          .....|++|+
T Consensus       320 ~F~~~~~~l~~~~~~~~~--~~~~Illv~~G----~~~i~~--~--------------------------~~~~~l~~G~  365 (389)
T PRK15131        320 DFAFSLHDLSDQPTTLSQ--QSAAILFCVEG----EAVLWK--G--------------------------EQQLTLKPGE  365 (389)
T ss_pred             CcEEEEEEECCceEEecC--CCcEEEEEEcc----eEEEEe--C--------------------------CeEEEECCCC
Confidence            356666777654333332  57899999999    998752  1                          1246899999


Q ss_pred             EEEeCCCCeEEEe
Q 046186          146 IFALPAGVAHWCY  158 (436)
Q Consensus       146 v~~iPaG~~h~~~  158 (436)
                      +++||++...+..
T Consensus       366 ~~fipa~~~~~~~  378 (389)
T PRK15131        366 SAFIAANESPVTV  378 (389)
T ss_pred             EEEEeCCCccEEE
Confidence            9999999887765

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=83.56  E-value=7.1  Score=32.91  Aligned_cols=71  Identities=14%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             ceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          334 LSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       334 ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      --.....+.||-   -+++..+.|+.-|++|...|.+-+.+.    -.++.+|+.|.||++--.-+... +...++|.+
T Consensus        23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~e----w~~~~aGesF~VpanssF~v~v~-~~~~Y~C~y   93 (94)
T PF06865_consen   23 SKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDE----WQTYSAGESFEVPANSSFDVKVK-EPTAYLCSY   93 (94)
T ss_dssp             EEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS-----EEEETT-EEEE-TTEEEEEEES-S-EEEEEEE
T ss_pred             CcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcc----cEEeCCCCeEEECCCCeEEEEEC-cceeeEEEe
Confidence            334455666665   567888999999999999999876542    23478999999999987766554 678888865

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PLN02658 homogentisate 1,2-dioxygenase

Probab=82.77  E-value=9.2  Score=40.59  Aligned_cols=75  Identities=13%  Similarity=0.199  Sum_probs=51.2

Q ss_pred             cceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      ||++....... .| -.-..|..+.+++|+.+|.++++---  |.  ++  +++||+.|||+|.-+.+.--+.....+.+
T Consensus       125 G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L~--v~pgei~VIPRG~~frv~l~~gp~rgyv~  197 (435)
T PLN02658        125 GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTEL--GK--LQ--VSPGEIVVIPRGFRFAVDLPDGPSRGYVL  197 (435)
T ss_pred             CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEec--cc--eE--ecCCCEEEecCccEEEEecCCCCeeEEEE
Confidence            55544433333 56 44467888899999999999988443  33  33  89999999999998887543344555444


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      .+.
T Consensus       198 E~~  200 (435)
T PLN02658        198 EIF  200 (435)
T ss_pred             eec
Confidence            444

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=82.31  E-value=15  Score=34.14  Aligned_cols=77  Identities=5%  Similarity=-0.128  Sum_probs=53.6

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC---e--E--EEEEecCccEEEEcCCCEEEE-EeC-C
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR---S--V--YDGEVRRGQIMVVPQNFAVVK-RAG-G  403 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~---~--~--~~~~l~~Gdv~vVP~g~~h~~-~ag-~  403 (436)
                      .+.+-.+.-.||--.++|=|..++=++.|++|...-+.+.....   .  .  ....+..|.+++++....|-+ |++ +
T Consensus        74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~  153 (175)
T PF05995_consen   74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD  153 (175)
T ss_dssp             T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred             CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence            45666788999999999999999999999999999998877655   1  1  122367888888899999998 776 5


Q ss_pred             CcEEEE
Q 046186          404 AEFEWI  409 (436)
Q Consensus       404 e~~~~l  409 (436)
                      +.+.-|
T Consensus       154 ~~avSL  159 (175)
T PF05995_consen  154 EPAVSL  159 (175)
T ss_dssp             S-EEEE
T ss_pred             CCEEEE
Confidence            554433

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=82.16  E-value=7.3  Score=32.44  Aligned_cols=87  Identities=16%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             EEecCCceecCeeecCC---ceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEE
Q 046186           72 HTIRQKGLLLPQFSNSP---QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA  148 (436)
Q Consensus        72 ~~i~pg~l~~Ph~h~a~---ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~  148 (436)
                      ...++|+...+|.|+..   -++||--+..  .+.+.+..|.....+..+....     ..............++||+++
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~--~~~l~f~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~G~lvl   77 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEG--SGPLRFHDPRGSFSFGAPFDNY-----DQNDLNSPYYIVEPEEGDLVL   77 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TT--S-SEEEE-TTCCCGTTS----T-----TTTCCC-SEEEE---TTEEEE
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCC--CCceeeeCCCccceeccccccc-----ccCcccCceEEeCCCCCEEEE
Confidence            35678889999999853   4455542210  2334444442221111100000     000001112357889999999


Q ss_pred             eCCCCeEEEe-ccCCCcE
Q 046186          149 LPAGVAHWCY-NEGSTPV  165 (436)
Q Consensus       149 iPaG~~h~~~-N~g~e~l  165 (436)
                      +|+-+.|... |.++++=
T Consensus        78 FPs~l~H~v~p~~~~~~R   95 (101)
T PF13759_consen   78 FPSWLWHGVPPNNSDEER   95 (101)
T ss_dssp             EETTSEEEE----SSS-E
T ss_pred             eCCCCEEeccCcCCCCCE
Confidence            9999999986 4445433

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=82.12  E-value=9.9  Score=40.31  Aligned_cols=74  Identities=15%  Similarity=0.117  Sum_probs=50.0

Q ss_pred             cceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      ||++....... .| -.-..|..+++++|+.+|.++++---  |.  +.  +++||+.|||+|.-+.+.-. +....+.+
T Consensus       126 G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L~--v~pgei~VIPRG~~frv~l~-gp~rgyi~  197 (429)
T TIGR01015       126 GLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEF--GR--LL--VEPNEICVIPRGVRFRVTVL-EPARGYIC  197 (429)
T ss_pred             CceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEec--cc--eE--ecCCCEEEecCccEEEEeeC-CCceEEEE
Confidence            55554444444 66 45557778899999999999988443  33  33  89999999999998877442 34444444


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      .+.
T Consensus       198 E~~  200 (429)
T TIGR01015       198 EVY  200 (429)
T ss_pred             ecc
Confidence            333

Missing in human disease alkaptonuria.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=81.91  E-value=4.8  Score=42.63  Aligned_cols=64  Identities=19%  Similarity=0.255  Sum_probs=40.2

Q ss_pred             Cce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEec
Q 046186          344 NAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN  414 (436)
Q Consensus       344 gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s  414 (436)
                      .+| -.--.|..+++++|+.+|+++++=..  |.  ++  +++||++|||+|.-+.+.-. ++...+.+.+.
T Consensus       134 ~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~--G~--L~--v~pGd~~VIPRG~~~rv~l~-~p~rgyi~E~~  198 (424)
T PF04209_consen  134 ASMDDRAFRNADGDELIFPQQGSLRLETEF--GR--LD--VRPGDYVVIPRGTRFRVELP-GPARGYIIENF  198 (424)
T ss_dssp             S---SEEEEESSEEEEEEEEES-EEEEETT--EE--EE--E-TTEEEEE-TT--EEEE-S-SSEEEEEEEEE
T ss_pred             CCCCCcceEcCCCCEEEEEEECCEEEEecC--ee--EE--EcCCeEEEECCeeEEEEEeC-CCceEEEEEcC
Confidence            445 33346777889999999999987332  33  34  89999999999999887555 56666665543

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PRK10579 hypothetical protein; Provisional

Probab=81.44  E-value=16  Score=30.77  Aligned_cols=69  Identities=14%  Similarity=0.157  Sum_probs=52.3

Q ss_pred             EEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          336 AERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       336 ~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .....+.||-   -++...+.|+.-|+.|+.+|.+-+.+.    -.++++|+-|.||.+--.-+.+. +...++|.+
T Consensus        25 kTlGVm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~e----w~~~~aG~sF~VpanssF~l~v~-~~t~Y~C~y   93 (94)
T PRK10579         25 ASVGVMAEGE---YTFSTAEPEEMTVISGALNVLLPGATD----WQVYEAGEVFNVPGHSEFHLQVA-EPTSYLCRY   93 (94)
T ss_pred             eEEEEEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCcc----cEEeCCCCEEEECCCCeEEEEEC-cceeeEEEc
Confidence            3344556664   578888999999999999999877542    33588999999999987766554 467777754

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=81.13  E-value=6.7  Score=33.08  Aligned_cols=64  Identities=9%  Similarity=0.114  Sum_probs=39.6

Q ss_pred             EEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEE
Q 046186           70 VRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA  148 (436)
Q Consensus        70 ~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~  148 (436)
                      .-++|+||+-+.....+ ...++||++|    ++.++   .                          + ...+.+|++++
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G----~~~v~---~--------------------------~-~~~~~~~~~~~   47 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEG----SVEVG---G--------------------------E-EDPLEAGQLVV   47 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEES----EEEET---T--------------------------T-TEEEETTEEEE
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEEC----cEEEC---C--------------------------C-cceECCCcEEE
Confidence            45788999864333333 6789999999    87664   0                          0 14689999999


Q ss_pred             eCCCCeEEEeccCCCcEEEE
Q 046186          149 LPAGVAHWCYNEGSTPVVAV  168 (436)
Q Consensus       149 iPaG~~h~~~N~g~e~l~~v  168 (436)
                      +..|..-.+.+.+ +++.++
T Consensus        48 l~~g~~i~~~a~~-~~a~~l   66 (104)
T PF05726_consen   48 LEDGDEIELTAGE-EGARFL   66 (104)
T ss_dssp             E-SECEEEEEESS-SSEEEE
T ss_pred             ECCCceEEEEECC-CCcEEE
Confidence            9877776666653 444444

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PLN02658 homogentisate 1,2-dioxygenase

Probab=80.78  E-value=8.9  Score=40.69  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=33.6

Q ss_pred             cCCceecccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186          342 HRNAMMVPHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV  397 (436)
Q Consensus       342 ~~gam~~PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h  397 (436)
                      ..++++.|.+|.| ..|+++.+.|.-     +..     +..+.+|.+=.=|.+.+|
T Consensus       320 ae~TfrpPyyHrN~~sEfmgli~G~y-----~ak-----~~gf~pGg~SLH~~~~pH  366 (435)
T PLN02658        320 AEHTFRPPYYHRNCMSEFMGLIYGSY-----EAK-----ADGFLPGGASLHSCMTPH  366 (435)
T ss_pred             ccCccCCCCCccchhhhhhhhccccc-----ccc-----cCCccCCeeeecCCCCCC
Confidence            3499999999999 458888888862     111     112778888888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	436
3qac_A	465	Structure Of Amaranth 11s Proglobulin Seed Storage		1e-100
2evx_A	459	Crystal Structure Of Pumpkin Seed Globulin Length =		1e-95
1ud1_A	476	Crystal Structure Of Proglycinin Mutant C88s Length		4e-84
1fxz_A	476	Crystal Structure Of Soybean Proglycinin A1ab1b Hom		7e-84
1ucx_A	476	Crystal Structure Of Proglycinin C12g Mutant Length		1e-82
3kgl_A	466	Crystal Structure Of Procruciferin, 11s Globulin Fr		4e-80
3ehk_A	531	Crystal Structure Of Pru Du Amandin, An Allergenic		5e-69
3ksc_A	496	Crystal Structure Of Pea Prolegumin, An 11s Seed Gl		2e-48
3ksc_A	496	Crystal Structure Of Pea Prolegumin, An 11s Seed Gl		1e-41
3c3v_A	510	Crystal Structure Of Peanut Major Allergen Ara H 3		2e-46
2d5f_A	493	Crystal Structure Of Recombinant Soybean Proglycini		2e-44
2d5f_A	493	Crystal Structure Of Recombinant Soybean Proglycini		1e-37
1od5_A	492	Crystal Structure Of Glycinin A3b4 Subunit Homohexa		2e-44
1od5_A	492	Crystal Structure Of Glycinin A3b4 Subunit Homohexa		2e-37

>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein From Amaranthus Hypochondriacus L Length = 465

Iteration: 1
 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/419 (45%), Positives = 256/419 (61%), Gaps = 28/419 (6%)
Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+CQI+ L ALEP NR++ E G+ E WD   ++F+CAGV+V+R TI   GLLLP F+++P
Sbjct: 12  NECQIDRLTALEPTNRIQAERGLTEVWDSNEQEFRCAGVSVIRRTIEPHGLLLPSFTSAP 71
Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQ---GGFGESA-----------GRSQQDS 134
           +L+YI Q      G  G   PG PETY+S  Q   GG  E             G   QD 
Sbjct: 72  ELIYIEQG----NGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQ 127
Query: 135 HQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRN-PRKFHLAGNP 193
           HQKIR  R+GDIFA+PAGV+HW YN G  P                 +N P +F+LAG P
Sbjct: 128 HQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKP 187
Query: 194 XXXXXXXXXXXXXXXXXXCN--NVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV 251
                              N  N+F GF+TR+LAE+F V E + ++L++E+D RG IV V
Sbjct: 188 QQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRV 247
Query: 252 RGQLQVARPPRTQSQXXXXXXXXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKADIY 311
           +  L V +PP                         NGVEET+C+ +L  N+ DPSKAD+Y
Sbjct: 248 QEGLHVIKPP-------SRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVY 300
Query: 312 TQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVV 371
           T  AG +TT+NSFNLP+LR ++LSA +G+L+RNAMM PH+NLNAH+IMY + G   +Q+V
Sbjct: 301 TPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIV 360
Query: 372 DSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMR 430
           +  G+SV+D E+ RGQ++VVPQNFA+VK+A    FEW+SFKT++NAM   L+GRTS +R
Sbjct: 361 NDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQSLAGRTSAIR 419

>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin Length = 459

Iteration: 1
 Score =  347 bits (889), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/421 (42%), Positives = 245/421 (58%), Gaps = 16/421 (3%)
Query: 14  FRGCLAANXXXXXXPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHT 73
           F+G           P  C++ NL A +P  R E EAG  E WD  +++FQCAGV ++RHT
Sbjct: 10  FQGSEVWQQHRYQSPRACRLENLRAQDPVRRAEAEAGFTEVWDQDNDEFQCAGVNMIRHT 69
Query: 74  IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQD 133
           IR KGLLLP FSN+P+L+++ Q +    G  G   PG  ETYQ+  +    +SAG + +D
Sbjct: 70  IRPKGLLLPGFSNAPKLIFVAQGF----GIRGIAIPGCAETYQTDLRRS--QSAGSAFKD 123
Query: 134 SHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNP 193
            HQKIR FR+GD+  +PAGV+HW YN G +                     RKF+LAG P
Sbjct: 124 QHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRP 183
Query: 194 XXXXXX----XXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV 249
                                   N+F GF    L EAF +D  LVR+L+ E D R  IV
Sbjct: 184 EQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 243
Query: 250 TVRGQLQVARPPRTQSQXXXXXXXXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKAD 309
            V    +V  P + + +                    NG+EET+CT++L++NIG   +AD
Sbjct: 244 QVDEDFEVLLPEKDEEERSRGRYIESESESE------NGLEETICTLRLKQNIGRSERAD 297
Query: 310 IYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQ 369
           ++    G I+T N   LP+LR ++LSAERG+L+ NAM+ PH+ +N+HS+MYA  G+  VQ
Sbjct: 298 VFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQ 357
Query: 370 VVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVM 429
           VVD++G+SV+DGEVR GQ++++PQNF V+KRA    FEWI+FKTNDNA+ + L+GR S M
Sbjct: 358 VVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQM 417
Query: 430 R 430
           R
Sbjct: 418 R 418

>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s Length = 476

Iteration: 1
 Score =  308 bits (789), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 166/429 (38%), Positives = 234/429 (54%), Gaps = 33/429 (7%)
Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+CQI  L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ R T+ +  L  P ++N P
Sbjct: 10  NECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGP 69
Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
           Q +YI Q     +G  G  +PG P T++ PQQ      + R Q D HQKI  FR+GD+ A
Sbjct: 70  QEIYIQQG----KGIFGMIYPGSPSTFEEPQQPQQRGQSSRPQ-DRHQKIYNFREGDLIA 124
Query: 149 LPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXX----------XX 198
           +P GVA W YN   TP                 + PR+F+LAGN                
Sbjct: 125 VPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ 184
Query: 199 XXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD--YRGAIVTVRGQLQ 256
                          ++  GF    L  AF+VD+++ + L+ E +   +GAIVTV+G L 
Sbjct: 185 SQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLS 244
Query: 257 VARPPRTQSQXXXXXXXXXXXXX----------------XXXXXXXNGVEETMCTMKLRE 300
           V +PP  + Q                                    NG++ET+CTM+LR 
Sbjct: 245 VIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRH 304
Query: 301 NIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMY 360
           NIG  S  DIY   AG +TT  S + P L W++LSAE G L +NAM VPH+NLNA+SI+Y
Sbjct: 305 NIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIY 364
Query: 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS 420
           A++G   +QVV+  G  V+DGE++ G++++VPQNF V  R+    FE++SFKTND  MI 
Sbjct: 365 ALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIG 424
Query: 421 PLSGRTSVM 429
            L+G  S++
Sbjct: 425 TLAGANSLL 433

>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer Length = 476

Iteration: 1
 Score =  307 bits (787), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 166/429 (38%), Positives = 234/429 (54%), Gaps = 33/429 (7%)
Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+CQI  L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ R T+ +  L  P ++N P
Sbjct: 10  NECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGP 69
Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
           Q +YI Q     +G  G  +PG P T++ PQQ      + R Q D HQKI  FR+GD+ A
Sbjct: 70  QEIYIQQG----KGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQ-DRHQKIYNFREGDLIA 124
Query: 149 LPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXX----------XX 198
           +P GVA W YN   TP                 + PR+F+LAGN                
Sbjct: 125 VPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ 184
Query: 199 XXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD--YRGAIVTVRGQLQ 256
                          ++  GF    L  AF+VD+++ + L+ E +   +GAIVTV+G L 
Sbjct: 185 SQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLS 244
Query: 257 VARPPRTQSQXXXXXXXXXXXXX----------------XXXXXXXNGVEETMCTMKLRE 300
           V +PP  + Q                                    NG++ET+CTM+LR 
Sbjct: 245 VIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRH 304
Query: 301 NIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMY 360
           NIG  S  DIY   AG +TT  S + P L W++LSAE G L +NAM VPH+NLNA+SI+Y
Sbjct: 305 NIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIY 364
Query: 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS 420
           A++G   +QVV+  G  V+DGE++ G++++VPQNF V  R+    FE++SFKTND  MI 
Sbjct: 365 ALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIG 424
Query: 421 PLSGRTSVM 429
            L+G  S++
Sbjct: 425 TLAGANSLL 433

>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant Length = 476

Iteration: 1
 Score =  303 bits (776), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/429 (38%), Positives = 233/429 (54%), Gaps = 33/429 (7%)
Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+ QI  L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ R T+ +  L  P ++N P
Sbjct: 10  NEGQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGP 69
Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
           Q +YI Q     +G  G  +PG P T++ PQQ      + R Q D HQKI  FR+GD+ A
Sbjct: 70  QEIYIQQG----KGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQ-DRHQKIYNFREGDLIA 124
Query: 149 LPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXX----------XX 198
           +P GVA W YN   TP                 + PR+F+LAGN                
Sbjct: 125 VPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ 184
Query: 199 XXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD--YRGAIVTVRGQLQ 256
                          ++  GF    L  AF+VD+++ + L+ E +   +GAIVTV+G L 
Sbjct: 185 SQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLS 244
Query: 257 VARPPRTQSQXXXXXXXXXXXXX----------------XXXXXXXNGVEETMCTMKLRE 300
           V +PP  + Q                                    NG++ET+CTM+LR 
Sbjct: 245 VIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRH 304
Query: 301 NIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMY 360
           NIG  S  DIY   AG +TT  S + P L W++LSAE G L +NAM VPH+NLNA+SI+Y
Sbjct: 305 NIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIY 364
Query: 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS 420
           A++G   +QVV+  G  V+DGE++ G++++VPQNF V  R+    FE++SFKTND  MI 
Sbjct: 365 ALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIG 424
Query: 421 PLSGRTSVM 429
            L+G  S++
Sbjct: 425 TLAGANSLL 433

>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From Brassica Napus Length = 466

Iteration: 1
 Score =  295 bits (755), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/441 (37%), Positives = 240/441 (54%), Gaps = 61/441 (13%)
Query: 28  PNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNS 87
           PN+CQ++ L ALEP++ ++ EAG +E WD    Q +C+GV+ VR+ I  KGL LP F ++
Sbjct: 4   PNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFST 63
Query: 88  PQLVYILQAYTYRRGSHGDPFPGYPETYQSP---QQGG---FGESAGRSQ---------- 131
            +L ++ +      G  G   PG  ET+Q     Q GG   FGE  G+ Q          
Sbjct: 64  AKLSFVAKG----EGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQ 119
Query: 132 --------------------QDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXX 171
                               +D HQK+   R GD  A   GVA W YN+G+ P       
Sbjct: 120 GQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVL 179
Query: 172 XXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXXXXXXXXXCNNVFCGFDTRILAEAFNVD 231
                     RNPR F+LAGN                     N+  GF   +LA+AF +D
Sbjct: 180 DLASHQNQLDRNPRPFYLAGN----NPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKID 235
Query: 232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPP-RTQSQXXXXXXXXXXXXXXXXXXXXNGVE 290
            R  ++L++++D RG I+ V+G   V RPP R+Q                      NG+E
Sbjct: 236 VRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQ----------------RPQEEVNGLE 279
Query: 291 ETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPH 350
           ET+C+ +  +N+ DPS AD+Y    G+I+TLNS++LP+LR+++LSA RG + +NAM++P 
Sbjct: 280 ETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQ 339
Query: 351 WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWIS 410
           WN NA++++Y   G  HVQVV+  G  V+DG+V +GQ++ +PQ F+VVKRA   +F WI 
Sbjct: 340 WNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIE 399
Query: 411 FKTNDNAMISPLSGRTSVMRG 431
           FKTN NA I+ L+GRTSV+RG
Sbjct: 400 FKTNANAQINTLAGRTSVLRG 420

>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein From Prunus Dulcis Length = 531

Iteration: 1
 Score =  258 bits (659), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 185/324 (57%), Gaps = 25/324 (7%)
Query: 133 DSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGN 192
           D HQK RR R+GD+ A+PAGVA+W YN+G                    +NPRKF+LAGN
Sbjct: 168 DRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGN 227
Query: 193 PXXXXXXXXXXX---------------------XXXXXXXCNNVFCGFDTRILAEAFNVD 231
           P                                        NNVF GF+T++LA+A NV+
Sbjct: 228 PENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVN 287
Query: 232 ERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQXXXXXXXXXXXXXXXXXX----XXN 287
           E   R L+ + D R  I+ VRG L   +PPR + +                        N
Sbjct: 288 EETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQLMAN 347
Query: 288 GVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMM 347
           G+EET C+++L+ENIG+P +ADI++  AG I+TLNS NLP+LR+++LSAERG  +RN + 
Sbjct: 348 GLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIY 407
Query: 348 VPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFE 407
            PHWN+NAHS++Y I G+  VQVV+  G ++ D EV++GQ+ +VPQN  V+++AG   FE
Sbjct: 408 SPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFE 467
Query: 408 WISFKTNDNAMISPLSGRTSVMRG 431
           + +FKT +NA I+ L+GRTS +R 
Sbjct: 468 YFAFKTEENAFINTLAGRTSFLRA 491

>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin From Pisum Sativum L. Length = 496

Iteration: 1
 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 140/242 (57%), Gaps = 10/242 (4%)
Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+CQ+  L+ALEP+NR+E E G++ETW+P ++QF+CAGVA+ R T+++  L  P +SN+P
Sbjct: 8   NECQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRNALRRPYYSNAP 67
Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
           Q ++I Q   Y     G  FPG PET++ PQ+   GE  GR  +D HQK+ RFR+GDI A
Sbjct: 68  QEIFIQQGNGY----FGMVFPGCPETFEEPQESEQGE--GRRYRDRHQKVNRFREGDIIA 121
Query: 149 LPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXX--XX 206
           +P G+  W YN+  TP                 + PR+F+LAGN                
Sbjct: 122 VPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQ 181
Query: 207 XXXXXCNNVFCGFDTRILAEAFNVDERLVRRL--RSEKDYRGAIVTVRGQLQVARPPRTQ 264
                 NN+F GF    L +AFNV+  +V RL  R+E + +GAIV V+G L +  PP  Q
Sbjct: 182 EQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQ 241
Query: 265 SQ 266
           ++
Sbjct: 242 AR 243

>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin From Pisum Sativum L. Length = 496

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 105/143 (73%)
Query: 287 NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAM 346
           NG+EET+CT KLR NIG  S  DIY   AG I T+ S +LPVLRW++LSAE G LH+NAM
Sbjct: 311 NGLEETVCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAM 370
Query: 347 MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEF 406
            VPH+NLNA+SI+YA+ G   +QVV+  G +V+DGE+  G+ + VPQN+AV  ++    F
Sbjct: 371 FVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRF 430
Query: 407 EWISFKTNDNAMISPLSGRTSVM 429
            +++FKTND A I+ L+G +SV+
Sbjct: 431 SYVAFKTNDRAGIARLAGTSSVI 453

>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3 Length = 510

Iteration: 1
 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/227 (44%), Positives = 138/227 (60%), Gaps = 11/227 (4%)
Query: 214 NVFCGFDTRILAEAFNVDER-LVRRLR--SEKDYRGAIVTVRGQLQVARPPRTQ------ 264
           N+F GF    LA+AF VD+R +V+ LR  +E + +GAIVTVRG L++  P R +      
Sbjct: 241 NIFSGFTPEFLAQAFQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKRGADEEE 300
Query: 265 --SQXXXXXXXXXXXXXXXXXXXXNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLN 322
              +                    NG+EET+CT  +++NIG     DIY   AG + T N
Sbjct: 301 EYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTAN 360
Query: 323 SFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGE 382
             NL +LRW+ LSAE G L+RNA+ VPH+N NAHSI+YA+ G  HVQVVDS G  VYD E
Sbjct: 361 ELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEE 420
Query: 383 VRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVM 429
           ++ G ++VVPQNFAV  ++    FE+++FKT+    I+ L+G  SV+
Sbjct: 421 LQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVI 467

>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4 Subunit, Its Comparison With Mature Glycinin A3b4 Subunit, Responsible For Hexamer Assembly Length = 493

Iteration: 1
 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/247 (38%), Positives = 128/247 (51%), Gaps = 19/247 (7%)
Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+CQ+NNL ALEP++RVE E G++ETW+  H + QCAGV V + T+ + GL LP +S  P
Sbjct: 7   NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYP 66
Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF--GESAGRSQQDSHQKIRRFRQGDI 146
           Q++ ++Q     +G+ G  FPG PET++ PQQ     G  + +  QDSHQKIR F +GD+
Sbjct: 67  QMIIVVQG----KGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDV 122
Query: 147 FALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXXXX 206
             +P GV +W YN G  P                 +NPR F+LAGNP             
Sbjct: 123 LVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQ 182
Query: 207 XXX-------------XXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRG 253
                               +V  GF    LA++FN +E    +LRS  D R  IVTV G
Sbjct: 183 QKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG 242
Query: 254 QLQVARP 260
            L V  P
Sbjct: 243 GLSVISP 249

>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4 Subunit, Its Comparison With Mature Glycinin A3b4 Subunit, Responsible For Hexamer Assembly Length = 493

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 95/134 (70%)
Query: 287 NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAM 346
           NGVEE +CTMKL ENI  PS+AD Y   AG I+TLNS  LP LR   LSA+  +L+RN +
Sbjct: 320 NGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGI 379
Query: 347 MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEF 406
             PHWNLNA+S++Y   G   V+VV+  G +V+DGE+RRGQ++VVPQNF V ++ G    
Sbjct: 380 YSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGL 439
Query: 407 EWISFKTNDNAMIS 420
           E++ FKT+ NA+ S
Sbjct: 440 EYVVFKTHHNAVSS 453

>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer Length = 492

Iteration: 1
 Score =  176 bits (446), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/247 (38%), Positives = 128/247 (51%), Gaps = 19/247 (7%)
Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+CQ+NNL ALEP++RVE E G++ETW+  H + QCAGV V + T+ + GL LP +S  P
Sbjct: 6   NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYP 65
Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF--GESAGRSQQDSHQKIRRFRQGDI 146
           Q++ ++Q     +G+ G  FPG PET++ PQQ     G  + +  QDSHQKIR F +GD+
Sbjct: 66  QMIIVVQG----KGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDV 121
Query: 147 FALPAGVAHWCYNEGSTPXXXXXXXXXXXXXXXXXRNPRKFHLAGNPXXXXXXXXXXXXX 206
             +P GV +W YN G  P                 +NPR F+LAGNP             
Sbjct: 122 LVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQ 181
Query: 207 XXX-------------XXCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRG 253
                               +V  GF    LA++FN +E    +LRS  D R  IVTV G
Sbjct: 182 QKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG 241
Query: 254 QLQVARP 260
            L V  P
Sbjct: 242 GLSVISP 248

>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer Length = 492

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 95/134 (70%)
Query: 287 NGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAM 346
           NGVEE +CTMKL ENI  PS+AD Y   AG I+TLNS  LP LR   LSA+  +L+RN +
Sbjct: 319 NGVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGI 378
Query: 347 MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEF 406
             PHWNLNA+S++Y   G   V+VV+  G +V+DGE+RRGQ++VVPQNF V ++ G    
Sbjct: 379 YSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGL 438
Query: 407 EWISFKTNDNAMIS 420
           E++ FKT+ NA+ S
Sbjct: 439 EYVVFKTHHNAVSS 452

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	436
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	1e-134
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	1e-129
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	1e-127
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	1e-127
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	1e-126
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	1e-126
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	1e-124
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	1e-120
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	3e-66
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	4e-05
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	7e-58
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	2e-06
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	1e-51
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	1e-50
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	2e-06
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	3e-50
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	2e-05
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	2e-31
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	1e-04
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	1e-26
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	4e-22
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	4e-04
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	1e-22
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	7e-15
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	4e-04
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	7e-17
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	8e-11

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score =  394 bits (1012), Expect = e-134
 Identities = 197/491 (40%), Positives = 276/491 (56%), Gaps = 79/491 (16%)

Query: 20  ANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGL 79
           A Q Q    N CQ+N L+A EP+NR++ EAG +ETW+     FQCAGVA  R TI++ GL
Sbjct: 1   ARQSQLSPQNQCQLNQLQAREPDNRIQAEAGQIETWNFNQGDFQCAGVAASRITIQRNGL 60

Query: 80  LLPQFSNSPQLVYILQA----------------YTYRRGSHGDPFPGYPETYQSPQ---- 119
            LP +SN+PQL+YI+Q                  + +    G       E  Q  Q    
Sbjct: 61  HLPSYSNAPQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQGRQQEQEQERQQQQQGEQG 120

Query: 120 ----------------------------------QGGFGESAGRSQQDSHQKIRRFRQGD 145
                                             QG   +     Q D HQK RR R+GD
Sbjct: 121 RQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGD 180

Query: 146 IFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQER 205
           + A+PAGVA+W YN+G   +VAV L  V+++ NQLD+NPRKF+LAGNP  EF QQ Q + 
Sbjct: 181 VVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQP 240

Query: 206 ---------------------FGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDY 244
                                       NNVF GF+T++LA+A NV+E   R L+ + D 
Sbjct: 241 RQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDN 300

Query: 245 RGAIVTVRGQLQVARPPRTQSQRE----YEEDSSEYERSRGRYGGDNGVEETMCTMKLRE 300
           R  I+ VRG L   +PPR + +RE     +E   +  + +G     NG+EET C+++L+E
Sbjct: 301 RNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQLMANGLEETFCSLRLKE 360

Query: 301 NIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMY 360
           NIG+P +ADI++  AG I+TLNS NLP+LR+++LSAERG  +RN +  PHWN+NAHS++Y
Sbjct: 361 NIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVY 420

Query: 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS 420
            I G+  VQVV+  G ++ D EV++GQ+ +VPQN  V+++AG   FE+ +FKT +NA I+
Sbjct: 421 VIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENAFIN 480

Query: 421 PLSGRTSVMRG 431
            L+GRTS +R 
Sbjct: 481 TLAGRTSFLRA 491

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  380 bits (977), Expect = e-129
 Identities = 194/460 (42%), Positives = 280/460 (60%), Gaps = 57/460 (12%)

Query: 23  QQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLP 82
           ++  Q N+CQ+  L+ALEP+NR+E E G++ETW+P ++QF+CAGVA+ R T+++  L  P
Sbjct: 2   REQPQQNECQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRNALRRP 61

Query: 83  QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR 142
            +SN+PQ ++I Q      G  G  FPG PET++ PQ+   GE  GR  +D HQK+ RFR
Sbjct: 62  YYSNAPQEIFIQQG----NGYFGMVFPGCPETFEEPQESEQGE--GRRYRDRHQKVNRFR 115

Query: 143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQ 202
           +GDI A+P G+  W YN+  TPV+AV L D+ +++NQLD+ PR+F+LAGN  QEF Q + 
Sbjct: 116 EGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQH 175

Query: 203 QERFGGHQQ--CNNVFCGFDTRILAEAFNVDERLVRRLRS--EKDYRGAIVTVRGQLQVA 258
           Q+     Q+   NN+F GF    L +AFNV+  +V RL+   E + +GAIV V+G L + 
Sbjct: 176 QQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSII 235

Query: 259 RPPRTQSQ-----------------------------------------------REYEE 271
            PP  Q++                                                E ++
Sbjct: 236 SPPEKQARHQRGSRQEEDEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKK 295

Query: 272 DSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRW 331
           +    ++ + R  GDNG+EET+CT KLR NIG  S  DIY   AG I T+ S +LPVLRW
Sbjct: 296 ERGGSQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRW 355

Query: 332 IQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVV 391
           ++LSAE G LH+NAM VPH+NLNA+SI+YA+ G   +QVV+  G +V+DGE+  G+ + V
Sbjct: 356 LKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTV 415

Query: 392 PQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRG 431
           PQN+AV  ++    F +++FKTND A I+ L+G +SV+  
Sbjct: 416 PQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVINN 455

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  375 bits (963), Expect = e-127
 Identities = 180/438 (41%), Positives = 261/438 (59%), Gaps = 33/438 (7%)

Query: 22  QQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLL 81
            ++  Q N+CQI  L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ R T+ +  L  
Sbjct: 3   SREQPQQNECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRR 62

Query: 82  PQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF 141
           P ++N PQ +YI Q     +G  G  +PG P T++ PQQ           QD HQKI  F
Sbjct: 63  PSYTNGPQEIYIQQG----KGIFGMIYPGCPSTFEEPQQP-QQRGQSSRPQDRHQKIYNF 117

Query: 142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQ--- 198
           R+GD+ A+P GVA W YN   TPVVAV ++D  + +NQLD+ PR+F+LAGN  QEF    
Sbjct: 118 REGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQ 177

Query: 199 -------QQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD--YRGAIV 249
                   Q+ + +     +  ++  GF    L  AF+VD+++ + L+ E +   +GAIV
Sbjct: 178 QEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIV 237

Query: 250 TVRGQLQVARPPRTQ----------------SQREYEEDSSEYERSRGRYGGDNGVEETM 293
           TV+G L V +PP  +                 Q + ++   +  R        NG++ET+
Sbjct: 238 TVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETI 297

Query: 294 CTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNL 353
           CTM+LR NIG  S  DIY   AG +TT  S + P L W++LSAE G L +NAM VPH+NL
Sbjct: 298 CTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNL 357

Query: 354 NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKT 413
           NA+SI+YA++G   +QVV+  G  V+DGE++ G++++VPQNF V  R+    FE++SFKT
Sbjct: 358 NANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKT 417

Query: 414 NDNAMISPLSGRTSVMRG 431
           ND  MI  L+G  S++  
Sbjct: 418 NDTPMIGTLAGANSLLNA 435

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score =  374 bits (961), Expect = e-127
 Identities = 188/422 (44%), Positives = 264/422 (62%), Gaps = 16/422 (3%)

Query: 14  FRGCLAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHT 73
           F+G     Q ++Q P  C++ NL A +P  R E EAG  E WD  +++FQCAGV ++RHT
Sbjct: 10  FQGSEVWQQHRYQSPRACRLENLRAQDPVRRAEAEAGFTEVWDQDNDEFQCAGVNMIRHT 69

Query: 74  IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQD 133
           IR KGLLLP FSN+P+L+++ Q      G  G   PG  ETYQ+  +       G + +D
Sbjct: 70  IRPKGLLLPGFSNAPKLIFVAQG----FGIRGIAIPGCAETYQTDLRRSQSA--GSAFKD 123

Query: 134 SHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP 193
            HQKIR FR+GD+  +PAGV+HW YN G + +V +V  D  N  NQ+D   RKF+LAG P
Sbjct: 124 QHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRP 183

Query: 194 HQEFQQQRQQERF----GGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV 249
            Q  +   + ER        ++  N+F GF    L EAF +D  LVR+L+ E D R  IV
Sbjct: 184 EQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 243

Query: 250 TVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKAD 309
            V    +V  P + + +R                  +NG+EET+CT++L++NIG   +AD
Sbjct: 244 QVDEDFEVLLPEKDEEERS------RGRYIESESESENGLEETICTLRLKQNIGRSERAD 297

Query: 310 IYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQ 369
           ++    G I+T N   LP+LR ++LSAERG+L+ NAM+ PH+ +N+HS+MYA  G+  VQ
Sbjct: 298 VFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQ 357

Query: 370 VVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVM 429
           VVD++G+SV+DGEVR GQ++++PQNF V+KRA    FEWI+FKTNDNA+ + L+GR S M
Sbjct: 358 VVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQM 417

Query: 430 RG 431
           R 
Sbjct: 418 RM 419

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score =  371 bits (954), Expect = e-126
 Identities = 171/441 (38%), Positives = 253/441 (57%), Gaps = 59/441 (13%)

Query: 26  QQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFS 85
           Q PN+CQ++ L ALEP++ ++ EAG +E WD    Q +C+GV+ VR+ I  KGL LP F 
Sbjct: 2   QFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFF 61

Query: 86  NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQ------------------------- 120
           ++ +L ++ +      G  G   PG  ET+Q                             
Sbjct: 62  STAKLSFVAKG----EGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQ 117

Query: 121 -----------GGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVV 169
                          +S G+  +D HQK+   R GD  A   GVA W YN+G+ P+V V 
Sbjct: 118 GQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVS 177

Query: 170 LLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFN 229
           +LD+A++ NQLDRNPR F+LAGN  Q       +E+    Q   N+  GF   +LA+AF 
Sbjct: 178 VLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQ----QPQKNILNGFTPEVLAKAFK 233

Query: 230 VDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGV 289
           +D R  ++L++++D RG I+ V+G   V RPP    + +                  NG+
Sbjct: 234 IDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQ---------------EEVNGL 278

Query: 290 EETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVP 349
           EET+C+ +  +N+ DPS AD+Y    G+I+TLNS++LP+LR+++LSA RG + +NAM++P
Sbjct: 279 EETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLP 338

Query: 350 HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWI 409
            WN NA++++Y   G  HVQVV+  G  V+DG+V +GQ++ +PQ F+VVKRA   +F WI
Sbjct: 339 QWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWI 398

Query: 410 SFKTNDNAMISPLSGRTSVMR 430
            FKTN NA I+ L+GRTSV+R
Sbjct: 399 EFKTNANAQINTLAGRTSVLR 419

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  373 bits (958), Expect = e-126
 Identities = 196/470 (41%), Positives = 265/470 (56%), Gaps = 65/470 (13%)

Query: 23  QQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLP 82
           +Q  + N CQ   L A  P+NR+E E G +ETW+P +++F+CAGVA+ R  +R+  L  P
Sbjct: 4   RQQPEENACQFQRLNAQRPDNRIESEGGYIETWNPNNQEFECAGVALSRLVLRRNALRRP 63

Query: 83  QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF------------GESAGRS 130
            +SN+PQ ++I Q     RG  G  FPG P TY+ P Q G              E   + 
Sbjct: 64  FYSNAPQEIFIQQG----RGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQ 119

Query: 131 QQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLA 190
           QQDSHQK+ RF +GD+ A+P GVA W YN+  T VVAV L D  NNDNQLD+ PR+F+LA
Sbjct: 120 QQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLA 179

Query: 191 GNPHQEFQQQRQQER--------------------------------------FGGHQQC 212
           GN  QEF + +QQ R                                           + 
Sbjct: 180 GNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEG 239

Query: 213 NNVFCGFDTRILAEAFNVDERLVRRL---RSEKDYRGAIVTVRGQLQVARPPRTQ----- 264
            N+F GF    LA+AF VD+R + +     +E + +GAIVTVRG L++  P R +     
Sbjct: 240 GNIFSGFTPEFLAQAFQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKRGADEE 299

Query: 265 ---SQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTL 321
               + EYE D  +  R RG  G  NG+EET+CT  +++NIG     DIY   AG + T 
Sbjct: 300 EEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTA 359

Query: 322 NSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDG 381
           N  NL +LRW+ LSAE G L+RNA+ VPH+N NAHSI+YA+ G  HVQVVDS G  VYD 
Sbjct: 360 NELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDE 419

Query: 382 EVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRG 431
           E++ G ++VVPQNFAV  ++    FE+++FKT+    I+ L+G  SV+  
Sbjct: 420 ELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVIDN 469

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score =  367 bits (942), Expect = e-124
 Identities = 207/430 (48%), Positives = 284/430 (66%), Gaps = 28/430 (6%)

Query: 18  LAANQQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQK 77
           +    +++QQ N+CQI+ L ALEP NR++ E G+ E WD   ++F+CAGV+V+R TI   
Sbjct: 1   MEGRFREFQQGNECQIDRLTALEPTNRIQAERGLTEVWDSNEQEFRCAGVSVIRRTIEPH 60

Query: 78  GLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQ--------------GGF 123
           GLLLP F+++P+L+YI Q      G  G   PG PETY+S  Q                 
Sbjct: 61  GLLLPSFTSAPELIYIEQG----NGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRK 116

Query: 124 GESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRN 183
               G   QD HQKIR  R+GDIFA+PAGV+HW YN G  P+VAV+L+D AN+ NQLD+N
Sbjct: 117 FGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKN 176

Query: 184 -PRKFHLAGNPHQEFQQQRQQERFGGHQQ--CNNVFCGFDTRILAEAFNVDERLVRRLRS 240
            P +F+LAG P QE   + Q  R     +    N+F GF+TR+LAE+F V E + ++L++
Sbjct: 177 FPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQA 236

Query: 241 EKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRE 300
           E+D RG IV V+  L V +PP    +   +        SRG     NGVEET+C+ +L  
Sbjct: 237 EQDDRGNIVRVQEGLHVIKPPSRAWEEREQG-------SRGSRYLPNGVEETICSARLAV 289

Query: 301 NIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMY 360
           N+ DPSKAD+YT  AG +TT+NSFNLP+LR ++LSA +G+L+RNAMM PH+NLNAH+IMY
Sbjct: 290 NVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMY 349

Query: 361 AISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS 420
            + G   +Q+V+  G+SV+D E+ RGQ++VVPQNFA+VK+A    FEW+SFKT++NAM  
Sbjct: 350 CVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQ 409

Query: 421 PLSGRTSVMR 430
            L+GRTS +R
Sbjct: 410 SLAGRTSAIR 419

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score =  217 bits (552), Expect = 3e-66
 Identities = 61/421 (14%), Positives = 129/421 (30%), Gaps = 85/421 (20%)

Query: 44  RVECEAG---VVETWDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTY 99
           R   + G   V++ +D    QFQ      +V+   +   L+LP+ +++  ++ I Q    
Sbjct: 17  RYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQ---- 72

Query: 100 RRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYN 159
            + +         +++                           +G    +P+G   +  N
Sbjct: 73  GQATVTVANGNNRKSF------------------------NLDEGHALRIPSGFISYILN 108

Query: 160 EG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCG 218
              +  +    +    N   Q       F  A +                 +  ++   G
Sbjct: 109 RHDNQNLRVAKISMPVNTPGQF----EDFFPASS-----------------RDQSSYLQG 147

Query: 219 FDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQR--EYEEDSSEY 276
           F    L  AFN +   +RR+  E++  G       +    R          +  ++  E 
Sbjct: 148 FSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNEGVIVKVSKEHVEE 207

Query: 277 ERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSA 336
                +     G EE    +    N+    + D+                P L+ + +  
Sbjct: 208 LTKHAKSVSKKGSEEE-GDITNPINL-REGEPDLSNNFGKLFEVKPDKKNPQLQDLDMML 265

Query: 337 ERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS------------------- 377
               +   A+M+PH+N  A  I+    G+ ++++V                         
Sbjct: 266 TCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGS 325

Query: 378 -----VYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN-DNAMISPLSG-RTSVMR 430
                 Y   ++ G + ++P    V   A   E   + F  N +N     L+G + +V+ 
Sbjct: 326 NREVRRYTARLKEGDVFIMPAAHPVAINASS-ELHLLGFGINAENNHRIFLAGDKDNVID 384

Query: 431 G 431
            
Sbjct: 385 Q 385

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 44.9 bits (105), Expect = 4e-05
 Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 35/186 (18%)

Query: 61  QFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQ--AYTYRRGSHGDPFPGYPETYQS 117
           Q Q   + +    I++  L+LP F S +  +V + +            +         + 
Sbjct: 257 QLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEE 316

Query: 118 PQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANND 177
            +      S    ++ +     R ++GD+F +PA             ++   +       
Sbjct: 317 DEDEEEEGSNREVRRYTA----RLKEGDVFIMPAAHPVAINASSELHLLGFGINA----- 367

Query: 178 NQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRR 237
                N  +  LAG+                    +NV    + +    AF      V +
Sbjct: 368 ----ENNHRIFLAGDK-------------------DNVIDQIEKQAKDLAFPGSGEQVEK 404

Query: 238 LRSEKD 243
           L   + 
Sbjct: 405 LIKNQK 410

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score =  195 bits (496), Expect = 7e-58
 Identities = 63/414 (15%), Positives = 123/414 (29%), Gaps = 83/414 (20%)

Query: 37  EALEPNNRVECEAG---VVETWDPGHEQFQC-AGVAVVRHTIRQKGLLLPQFSNSPQLVY 92
                      E G   V++ +D   +Q Q      VV    +   LLLP  +++  L+ 
Sbjct: 27  SDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLV 86

Query: 93  ILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAG 152
           +L              P   ++Y                           QG    +PAG
Sbjct: 87  VLNG----TAVLTLVNPDSRDSY------------------------ILEQGHAQKIPAG 118

Query: 153 VAHWCYNEG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQ 211
              +  N   +  +  + L    NN ++       F L+    Q                
Sbjct: 119 TTFFLVNPDDNENLRIIKLAIPVNNPHRFQD----FFLSSTEAQ---------------- 158

Query: 212 CNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEE 271
             +   GF   IL  +F+ D + + R+   ++ +        +  V    + +  +E   
Sbjct: 159 -QSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQELM- 216

Query: 272 DSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRW 331
                          +  +E              +   IY+   G    +     P L+ 
Sbjct: 217 ----KHAKSSSRKELSSQDEPFNLR---------NSKPIYSNKFGRWYEMTPEKNPQLKD 263

Query: 332 IQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS------------VY 379
           + +      +   A+++PH++  A  IM    G   +++V    +              Y
Sbjct: 264 LDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRY 323

Query: 380 DGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN--DNAMISPLSGRTSVMRG 431
             E+    + V+P  + V   A      + +F  N  +N       G+ +VM  
Sbjct: 324 RAELSEDDVFVIPAAYPVAINATS-NLNFFAFGINAENNRRNFLAGGKDNVMSE 376

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 33/256 (12%), Positives = 65/256 (25%), Gaps = 54/256 (21%)

Query: 22  QQQWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGH-EQFQCAGVAVVRHTIRQKGLL 80
           +   ++    Q               + G      P    Q +   V +    +++  LL
Sbjct: 220 KSSSRKELSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALL 279

Query: 81  LPQF-SNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIR 139
           LP + S +  ++ I +                             +       +  +   
Sbjct: 280 LPHYSSKAIVIMVINE----GEAKIELVGL----------SDQQQQKQQEESLEVQRYRA 325

Query: 140 RFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQ 199
              + D+F +PA          +    A  +    N +N    N R F   G        
Sbjct: 326 ELSEDDVFVIPAAYPVAINATSNLNFFAFGI----NAEN----NRRNFLAGGK------- 370

Query: 200 QRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVAR 259
                        +NV     T +L  +F    + V +L  +          + +     
Sbjct: 371 -------------DNVMSEIPTEVLEVSFPASGKKVEKLIKK----------QSESHFVD 407

Query: 260 PPRTQSQREYEEDSSE 275
               Q QRE      +
Sbjct: 408 AQPEQQQREEGHKGRK 423

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score =  178 bits (451), Expect = 1e-51
 Identities = 66/422 (15%), Positives = 126/422 (29%), Gaps = 98/422 (23%)

Query: 19  AANQQQWQQPNDCQINNLEALEPNNRVECEAG---VVETWDPGHEQFQCAG-VAVVRHTI 74
           +  +++  Q N    N+  +       + + G   V++ +D   ++ Q      +V    
Sbjct: 2   SLREEEESQDNPFYFNSDNSWNT--LFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRS 59

Query: 75  RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDS 134
           + + LLLPQ +++  L+ +               P     Y                   
Sbjct: 60  KPETLLLPQQADAELLLVVRS----GSAILVLVKPDDRREYF------------------ 97

Query: 135 HQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPH 194
                     D   +PAG   +  N      + ++ L +  N+        +F L+    
Sbjct: 98  FLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNP----QIHEFFLSSTEA 153

Query: 195 QEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRL--RSEKDYRGAIVTVR 252
           Q                  +    F   IL  +FN     + R+    E    G IV + 
Sbjct: 154 Q-----------------QSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNID 196

Query: 253 GQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYT 312
            +                                  ++E     K         + +   
Sbjct: 197 SE---------------------------------QIKELSKHAKSSSRKSLSKQDNTIG 223

Query: 313 QGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVD 372
              G++T     +L VL           +   A+ VPH+   A  I+    G  HV++V 
Sbjct: 224 NEFGNLTERTDNSLNVLISSI------EMEEGALFVPHYYSKAIVILVVNEGEAHVELVG 277

Query: 373 SYGRS------VYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN-DNAMISPLSGR 425
             G         Y  E+ +  + V+P  + V  +A      +  F  N +N   + L+G+
Sbjct: 278 PKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATS-NVNFTGFGINANNNNRNLLAGK 336

Query: 426 TS 427
           T 
Sbjct: 337 TD 338

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score =  176 bits (447), Expect = 1e-50
 Identities = 68/458 (14%), Positives = 141/458 (30%), Gaps = 101/458 (22%)

Query: 2   ANTCSLLNLVILFRGCLAANQQQWQQPND---------CQINN---LEALEPNNRVECEA 49
           A     L L ++    ++A+                     NN     + +     + + 
Sbjct: 5   ARFPLWLLLGVVLLASVSASFAHSGHSGGEAEDESEESRAQNNPYLFRSNKFLTLFKNQH 64

Query: 50  G---VVETWDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHG 105
           G   +++ ++   E+ +      V+ +  +   LLLP  S+S  LV +L+     +    
Sbjct: 65  GSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEG----QAILV 120

Query: 106 DPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPV 165
              P   +TY                        +  QGD   + AG   +  N  +   
Sbjct: 121 LVNPDGRDTY------------------------KLDQGDAIKIQAGTPFYLINPDNNQN 156

Query: 166 VAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILA 225
           + ++   +             F L+                       +    F    L 
Sbjct: 157 LRILKFAITFRR---PGTVEDFFLSSTKRL-----------------PSYLSAFSKNFLE 196

Query: 226 EAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGG 285
            +++     + +   +++  G IV +            QS                    
Sbjct: 197 ASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRK---------------- 240

Query: 286 DNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNA 345
                 T+ +     N+    +  IY+   G +  +       LR + +      ++  A
Sbjct: 241 ------TLSSQDKPFNLRS--RDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGA 292

Query: 346 MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS----------VYDGEVRRGQIMVVPQNF 395
           + VPH+N  A  I+ A  G   V++V    +            Y   +  G I+V+P +F
Sbjct: 293 LFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSF 352

Query: 396 AVVKRAGGAEFEWISFKTN-DNAMISPLSG-RTSVMRG 431
            V  +A   +   +    N +N   + L+G + +V+R 
Sbjct: 353 PVALKAAS-DLNMVGIGVNAENNERNFLAGHKENVIRQ 389

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 22/216 (10%), Positives = 52/216 (24%), Gaps = 55/216 (25%)

Query: 61  QFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQ 119
           Q +   + +    + +  L +P + S +  ++   +                 E     Q
Sbjct: 275 QLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGR------------AEVELVGLEQ 322

Query: 120 QGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQ 179
           Q   G  + + ++ +        +GDI  +P+             +V + +         
Sbjct: 323 QQQQGLESMQLRRYA----ATLSEGDIIVIPSSFPVALKAASDLNMVGIGVNA------- 371

Query: 180 LDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLR 239
              N  +  LAG+                     NV      ++    F      V  L 
Sbjct: 372 --ENNERNFLAGHK-------------------ENVIRQIPRQVSDLTFPGSGEEVEELL 410

Query: 240 SEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSE 275
                       + +               +   + 
Sbjct: 411 EN----------QKESYFVDGQPRHIDAGGKARRAH 436

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score =  174 bits (442), Expect = 3e-50
 Identities = 62/408 (15%), Positives = 129/408 (31%), Gaps = 89/408 (21%)

Query: 44  RVECEAG---VVETWDPGHEQFQ-CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTY 99
             E + G   +++ ++    Q +      +V+   +   +LLP  +++  L+++L     
Sbjct: 22  LFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSG--- 78

Query: 100 RRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYN 159
            R                                  +       GD   +PAG  ++  N
Sbjct: 79  -RAILTLVNND------------------------DRDSYNLHPGDAQRIPAGTTYYLVN 113

Query: 160 EG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCG 218
                 +  + L    N   + D     F L+    Q                  +   G
Sbjct: 114 PHDHQNLKMIWLAIPVNKPGRYD----DFFLSSTQAQ-----------------QSYLQG 152

Query: 219 FDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYER 278
           F   IL  +F+ +   + R+   ++          Q Q        S+ +  +       
Sbjct: 153 FSHNILETSFHSEFEEINRVLFGEEEE--------QRQQEGVIVELSKEQIRQ-----LS 199

Query: 279 SRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAER 338
            R +      +        LR      S+  IY+   G    +     P LR + +    
Sbjct: 200 RRAKSSSRKTISSEDEPFNLR------SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSS 253

Query: 339 GLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSV-------------YDGEVRR 385
             ++  A+++PH+N  A  I+    G  ++++V    +               Y  E+  
Sbjct: 254 VDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSE 313

Query: 386 GQIMVVPQNFAVVKRAGGAEFEWISFKTND-NAMISPLSG-RTSVMRG 431
             + V+P  +  V  A      +++F  N  N   + L+G + +V+R 
Sbjct: 314 DDVFVIPAAYPFVVNATS-NLNFLAFGINAENNQRNFLAGEKDNVVRQ 360

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 42/184 (22%)

Query: 61  QFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQ 119
           Q +   + +    I +  LLLP F S +  ++ I        G          E     +
Sbjct: 243 QLRDLDIFLSSVDINEGALLLPHFNSKAIVILVIN------EGD------ANIELVGIKE 290

Query: 120 QGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQ 179
           Q    +      +   +      + D+F +PA          +   +A  +         
Sbjct: 291 QQQKQKQEEEPLE-VQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINA------- 342

Query: 180 LDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLR 239
              N ++  LAG                     +NV    + ++   AF    + V RL 
Sbjct: 343 --ENNQRNFLAGEK-------------------DNVVRQIERQVQELAFPGSAQDVERLL 381

Query: 240 SEKD 243
            ++ 
Sbjct: 382 KKQR 385

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score =  117 bits (295), Expect = 2e-31
 Identities = 28/217 (12%), Positives = 64/217 (29%), Gaps = 54/217 (24%)

Query: 40  EPNNRVECEAG---VVETWDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQ 95
           +     + + G   +++ ++   E+ +      V+ +  +   LLLP  S+S  LV +L+
Sbjct: 10  KFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLE 69

Query: 96  AYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAH 155
                +       P   +TY                        +  QGD   + AG   
Sbjct: 70  G----QAILVLVNPDGRDTY------------------------KLDQGDAIKIQAGTPF 101

Query: 156 WCYNEGST-PVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNN 214
           +  N  +   +  +           +      F L+                       +
Sbjct: 102 YLINPDNNQNLRILKFAITFRRPGTV----EDFFLSSTKRLP-----------------S 140

Query: 215 VFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV 251
               F    L  +++     + +   +++  G IV +
Sbjct: 141 YLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM 177

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 315 AGHITTLNSFNLPVLRWIQLSAERGLLHR---NAMMVPHWNLNAHSIMYAISGSCHVQVV 371
            G +  L  FN    +   L   R L +    N +++PH   ++  ++  + G   + +V
Sbjct: 19  HGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLLVLVLEGQAILVLV 77

Query: 372 DSYGRSVYDGEVRRGQIMVVPQ 393
           +  GR  Y   + +G  + +  
Sbjct: 78  NPDGRDTYK--LDQGDAIKIQA 97

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  109 bits (272), Expect = 1e-26
 Identities = 34/293 (11%), Positives = 78/293 (26%), Gaps = 61/293 (20%)

Query: 132 QDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAG 191
            +   +I    +G ++  P G  H     G      +++ +                   
Sbjct: 91  PEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSE------------- 137

Query: 192 NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV 251
                          G      +         + E        V +L  ++ Y  +    
Sbjct: 138 ---------------GATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQVYISSYGPA 182

Query: 252 RGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIY 311
            G L  A P                                   +++        +  + 
Sbjct: 183 SGPLASATPQGQ-----------------------------TAKIEVPHTHNLLGQQPLV 213

Query: 312 TQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVV 371
           + G   +   ++   P      ++     L   AM   HW+ NA    Y + G   + V 
Sbjct: 214 SLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVF 271

Query: 372 DSYGRSVYDGEVRRGQIMVVPQNFA-VVKRAGGAEFEWISFKTNDNAMISPLS 423
            S G++     +++G +  VP+ +   ++ +     + +    + +     LS
Sbjct: 272 ASEGKA-SVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLS 323

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 96.0 bits (238), Expect = 4e-22
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 4/127 (3%)

Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
           SK  +     G    + ++N PV +   ++     L   A+   HW+ NA    Y + G 
Sbjct: 26  SKTPLVLYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGR 83

Query: 366 CHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAE-FEWISFKTNDNAMISPLSG 424
             + +    G+     +V +G +   P+ +       G +  +++    +          
Sbjct: 84  TRITLTSPEGKV-EIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFS 142

Query: 425 RTSVMRG 431
            T  +  
Sbjct: 143 VTDWLSH 149

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 31/106 (29%)

Query: 139 RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQ 198
            R +QGD+  +P G  H   N    P+  VV+ +                  G+      
Sbjct: 280 SRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFN-----------------DGDY----- 317

Query: 199 QQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDY 244
                         +       + +L   F +   L ++L  +   
Sbjct: 318 ---------QSIDLSTWLASNPSSVLGNTFQISPELTKKLPVQDTI 354

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 98.0 bits (243), Expect = 1e-22
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
           S      +  G+   +    LP+     L++    L   A+   HW+  A    Y I GS
Sbjct: 53  SDTHNRLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEAE-WAYMIYGS 109

Query: 366 CHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGR 425
             V +VD  GRS +  +V  G +   P       +A     E++    + +   +     
Sbjct: 110 ARVTIVDEKGRS-FIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQL 168

Query: 426 TSVMRG 431
           T  +  
Sbjct: 169 TDWLAH 174

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 74.9 bits (183), Expect = 7e-15
 Identities = 42/291 (14%), Positives = 78/291 (26%), Gaps = 65/291 (22%)

Query: 132 QDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAG 191
           +     I    +GD++  P+G+ H            +V  D                   
Sbjct: 117 EKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDD------------------- 157

Query: 192 NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV 251
                              Q  +        ++A  F V +  +  L  ++ Y       
Sbjct: 158 ----------GSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY------- 200

Query: 252 RGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIY 311
               +   P   +       +         R                        + +  
Sbjct: 201 --IFENQLPGSLKDDIVEGPNGEVPYPFTYRL----------------------LEQEPI 236

Query: 312 TQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVV 371
               G +   +S N  V +   +++    +   AM   HW+ N H   Y ISG   + V 
Sbjct: 237 ESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVF 294

Query: 372 DSYGRSVYDGEVRRGQIMVVPQNFA-VVKRAGGAEFEWIS-FKTNDNAMIS 420
            S G +      + G +  VP      V+  G     ++  FK +  A +S
Sbjct: 295 ASDGHA-RTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVS 344

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 31/112 (27%)

Query: 133 DSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGN 192
           D H +   ++ GD+  +P  + H+  N G  P+V + +                     +
Sbjct: 297 DGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFK-----------------DDH 339

Query: 193 PHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDY 244
                               N          +    ++ +     L  EK  
Sbjct: 340 Y--------------ADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKHP 377

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score = 78.0 bits (191), Expect = 7e-17
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 303 GDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAI 362
                 +  T     +T L+    P    + +S  R          PH +  A  I   +
Sbjct: 41  KLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVM 100

Query: 363 SGSCHVQVVDSY--GRSVYDGEVRRGQIMVVPQNFA-VVKRAGGAEFEWISFKTNDNAMI 419
            G   V ++ S   G  +Y   VR G+  V+P+         G  E   +    + N  I
Sbjct: 101 KGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI 160

Query: 420 SPLS 423
             + 
Sbjct: 161 VFVP 164

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Length = 79

 Score = 57.1 bits (138), Expect = 8e-11
 Identities = 17/72 (23%), Positives = 31/72 (43%)

Query: 300 ENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIM 359
           +     S+  IY+   G +  +       LR + +      ++  A+ VPH+N  A  I+
Sbjct: 2   KPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVIL 61

Query: 360 YAISGSCHVQVV 371
            A  G   V++V
Sbjct: 62  VANEGRAEVELV 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	436
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	100.0
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	100.0
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	100.0
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	100.0
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	100.0
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	100.0
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	100.0
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	100.0
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	100.0
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	100.0
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	100.0
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	100.0
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	100.0
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	100.0
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	100.0
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.98
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.96
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.93
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.93
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.92
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.92
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.91
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.9
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.9
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.9
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.89
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.89
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.88
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.87
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.87
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.85
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.84
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.82
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.82
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.79
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.7
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.69
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.68
1sef_A	274	Conserved hypothetical protein; structural genomic	99.65
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.65
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.65
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.58
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.57
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.54
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.54
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.54
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.51
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.48
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.42
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.29
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.21
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.2
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.19
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.13
1v70_A	105	Probable antibiotics synthesis protein; structural	99.12
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.12
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.09
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.07
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.06
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.06
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.05
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.05
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.04
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.03
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.03
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.03
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.02
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.02
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.01
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.99
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.99
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.96
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.95
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.95
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.93
1v70_A	105	Probable antibiotics synthesis protein; structural	98.92
1sef_A	274	Conserved hypothetical protein; structural genomic	98.92
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.92
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.91
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.91
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.9
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.89
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.89
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	98.89
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.86
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.85
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.84
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.83
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.83
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.82
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.82
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.81
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	98.81
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.78
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.77
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.76
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.76
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.75
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.75
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.74
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.74
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.74
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.73
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.71
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.71
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.7
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.7
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.7
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.69
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.69
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.68
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.67
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.66
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.66
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.66
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.66
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.62
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.61
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.6
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.59
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.59
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.58
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.57
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.56
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.55
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.5
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	98.49
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.48
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.47
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.46
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.44
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.42
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.4
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.4
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.4
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.39
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.36
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.34
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.29
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.28
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.28
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.25
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.24
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.24
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.23
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.23
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.16
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.12
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.12
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.12
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.06
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.04
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.03
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.03
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.02
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.01
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.96
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.86
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	97.85
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	97.82
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	97.81
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.8
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	97.71
3bcw_A	123	Uncharacterized protein; structural genomics, join	97.69
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	97.57
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.55
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.49
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	97.4
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	97.38
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.37
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.36
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.34
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.29
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.28
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.26
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	97.17
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.14
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	97.13
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	97.09
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.02
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	96.96
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	96.92
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	96.89
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	96.82
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	96.79
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	96.72
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	96.68
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	96.56
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	96.42
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	96.41
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	96.37
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	96.27
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	96.26
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	96.22
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	96.18
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	96.13
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	96.0
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	95.97
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	95.97
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	95.96
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	95.96
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	95.94
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	95.82
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	95.78
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	95.76
4diq_A	489	Lysine-specific demethylase NO66; structural genom	95.67
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	95.66
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	95.6
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	95.55
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	95.55
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	95.43
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	95.21
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	95.19
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	94.82
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	94.57
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	94.48
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	94.45
3uss_A	211	Putative uncharacterized protein; cupin, three his	94.44
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	93.96
3uss_A	211	Putative uncharacterized protein; cupin, three his	93.89
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	93.74
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	93.53
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	93.5
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	93.5
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	93.49
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	93.36
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	93.34
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	93.33
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	93.19
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	93.01
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	92.4
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	92.22
3kv5_D	488	JMJC domain-containing histone demethylation prote	92.18
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	92.04
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	91.9
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	91.79
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	91.4
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	91.25
4diq_A	489	Lysine-specific demethylase NO66; structural genom	91.01
3kv9_A	397	JMJC domain-containing histone demethylation prote	90.48
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	90.3
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	90.05
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	89.77
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	89.67
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	89.6
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	88.96
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	88.77
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	87.9
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	87.2
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	86.92
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	86.49
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	86.33
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	85.73
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	85.69
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	85.69
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	85.64
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	84.43
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	84.28
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	83.0
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	81.82
3kv5_D	488	JMJC domain-containing histone demethylation prote	81.74
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	81.57
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	81.35
3kv9_A	397	JMJC domain-containing histone demethylation prote	81.02
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	80.73
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	80.73
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	80.61
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	80.13

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=100.00  E-value=1.4e-102  Score=817.27  Aligned_cols=406  Identities=50%  Similarity=0.884  Sum_probs=344.0

Q ss_pred             ccCCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEE
Q 046186           25 WQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSH  104 (436)
Q Consensus        25 ~~~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~  104 (436)
                      .++ ++|++++|+|++|+++|+||||.|++|++++|+|+|+||+++|++|.|+||++||||+|++++||++|    ++++
T Consensus         7 ~~~-~~C~~~~l~a~eP~~~i~se~G~~e~w~~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~a~el~yV~qG----~g~~   81 (531)
T 3fz3_A            7 SPQ-NQCQLNQLQAREPDNRIQAEAGQIETWNFNQGDFQCAGVAASRITIQRNGLHLPSYSNAPQLIYIVQG----RGVL   81 (531)
T ss_dssp             CTT-TTTCCCCCCCBCCCEEEEETTEEEEECCTTSHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEC----EEEE
T ss_pred             ccc-ccccccccCcCCCchhcccCCceEEEeCCCChhhccCcceEEEEEecCCCEeCCccCCCCeEEEEEEC----cEEE
Confidence            345 89999999999999999999999999999999999999999999999999999999999999999999    9999


Q ss_pred             EeeCCCCCCcccCCCCCCC-----------------------C---------------------------------ccCC
Q 046186          105 GDPFPGYPETYQSPQQGGF-----------------------G---------------------------------ESAG  128 (436)
Q Consensus       105 g~v~pg~~et~~~~~~~~~-----------------------~---------------------------------~~~~  128 (436)
                      |+|+|||||||+++++++.                       +                                 ++++
T Consensus        82 G~v~Pgcpet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (531)
T 3fz3_A           82 GAVFSGCPETFEESQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQ  161 (531)
T ss_dssp             EECCTTCCCCEECCCC----------------------------------------------------------------
T ss_pred             EEEcCCCccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccc
Confidence            9999999999987653110                       0                                 0012


Q ss_pred             cccc--cccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhh---
Q 046186          129 RSQQ--DSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQ---  203 (436)
Q Consensus       129 ~~~~--d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~---  203 (436)
                      +++.  |.|+|+++|++|||++||+|++||+||+|+++|++|+++|++|..||||++|+.|||||++++++++++++   
T Consensus       162 ~~~~~~d~hqkv~~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~  241 (531)
T 3fz3_A          162 QQFRQLDRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPR  241 (531)
T ss_dssp             ---CCSCEESCCEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC-------
T ss_pred             ccccccccceeeecccCCcEEEECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCccccccccccccc
Confidence            3344  99999999999999999999999999999999999999999999999999999999999987744332110   


Q ss_pred             ------------hhcc------cccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCccc
Q 046186          204 ------------ERFG------GHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQS  265 (436)
Q Consensus       204 ------------~~~~------~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~  265 (436)
                                  ++.+      +...++|||+||++++||+||||+.++++||++++++||.||||+++|++++|+....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv~~~l~~~~P~~~~~  321 (531)
T 3fz3_A          242 QQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQ  321 (531)
T ss_dssp             -------------------------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEECSSSCCCSCCC----
T ss_pred             ccccccccccccccccccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEEEecCCCcccCCchhhh
Confidence                        0000      1124479999999999999999999999999999999999999999999999976442


Q ss_pred             ccccccch-hhhh---hcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEe
Q 046186          266 QREYEEDS-SEYE---RSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLL  341 (436)
Q Consensus       266 ~~~~~~~~-~~~~---~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L  341 (436)
                      ++++++++ +++.   .+++++...|||||++|+||++|||++|+++|+|++.+|+++++|+.+||+|++|+||+++++|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~nGleet~c~~rl~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L  401 (531)
T 3fz3_A          322 EREHEERQQEQLQQERQQQGEQLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFF  401 (531)
T ss_dssp             --------------------------CGGGTGGGCCCEEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEE
T ss_pred             hhhhcccccccccccccccccccCCCCcccccccceeeeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEe
Confidence            21111110 1111   0111123459999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccc
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISP  421 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~  421 (436)
                      +||||++|||||+|+||+||++|+++|+||+++|+++|+++|++|||||||+|++|++++++++++|++|.++++|+.++
T Consensus       402 ~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G~~H~~~ag~e~l~flaF~ss~np~~~~  481 (531)
T 3fz3_A          402 YRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENAFINT  481 (531)
T ss_dssp             CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEE
T ss_pred             ecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCCCeEEEecCCCCEEEEEEecCCCCccee
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             cccccccccccCCC
Q 046186          422 LSGRTSVMRGKGRR  435 (436)
Q Consensus       422 LaG~~sv~~~lp~e  435 (436)
                      |||++|+|++||.+
T Consensus       482 LaG~~svf~~lP~e  495 (531)
T 3fz3_A          482 LAGRTSFLRALPDE  495 (531)
T ss_dssp             SSSTTCHHHHSCHH
T ss_pred             ccchhHHHHhCCHH
Confidence            99999999999854

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=100.00  E-value=6.3e-102  Score=807.33  Aligned_cols=399  Identities=52%  Similarity=0.879  Sum_probs=331.5

Q ss_pred             ccCCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEE
Q 046186           25 WQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSH  104 (436)
Q Consensus        25 ~~~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~  104 (436)
                      +++ ++|++++|+|++|++++++|+|.+++||+++++|+|+||+++|++|+||||++||||++++|+||++|    +|++
T Consensus         9 ~~~-~~c~~~~l~a~eP~~~i~se~G~~e~~d~~~~~l~~~gvs~~R~~i~P~gl~~Ph~h~a~ei~yV~qG----~g~~   83 (465)
T 3qac_A            9 QQG-NECQIDRLTALEPTNRIQAERGLTEVWDSNEQEFRCAGVSVIRRTIEPHGLLLPSFTSAPELIYIEQG----NGIT   83 (465)
T ss_dssp             -CC-CTTCCSCCCCBCCCEEEEETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEC----EEEE
T ss_pred             ccc-cccccccCCCCCCccceeCCCcEEEEECCCChhhcccceEEEEEEEcCCcCcccEEcCCCEEEEEEEC----cEEE
Confidence            345 89999999999999999999999999999999999999999999999999999999999999999999    9999


Q ss_pred             EeeCCCCCCcccCCCCCCC--------------CccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          105 GDPFPGYPETYQSPQQGGF--------------GESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       105 g~v~pg~~et~~~~~~~~~--------------~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      |+|+|||++||++++++..              .|++++++.|.|+|+++|++||||+||+|++||+||+|+++|++|++
T Consensus        84 g~v~pgc~etf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~  163 (465)
T 3qac_A           84 GMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVIL  163 (465)
T ss_dssp             EEECTTCCCCC------------------------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             EEecCCCCceeecchhccccccccccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEE
Confidence            9999999999987654211              12245677899999999999999999999999999999999999999


Q ss_pred             EecCCCCCcCC-CCCceeeecCCChhhhhHhhhhhh--cccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCcee
Q 046186          171 LDVANNDNQLD-RNPRKFHLAGNPHQEFQQQRQQER--FGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGA  247 (436)
Q Consensus       171 ~d~~n~~nqld-~~~~~f~laG~~~~~~~~~~~~~~--~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~  247 (436)
                      +|++|..|||| +++++|||||++++++++++++++  .+..+...|||+||++++||+||||+.++++||+++++++|.
T Consensus       164 ~d~~n~~nqld~~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~  243 (465)
T 3qac_A          164 IDTANHANQLDKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGN  243 (465)
T ss_dssp             ECTTSTTCCSCSSSCCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCS
T ss_pred             EcCCCcccccccccceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhcccccee
Confidence            99999999999 999999999998875543322111  111222389999999999999999999999999999999999


Q ss_pred             EEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCC
Q 046186          248 IVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLP  327 (436)
Q Consensus       248 Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P  327 (436)
                      ||+|+++|++++|+..+.     +++++.  .+++.|..||++|++|+||+++||++|+++|+|++.+|+++++|+.+||
T Consensus       244 Ivrv~~~l~~~~p~~~~~-----~~~~~~--~~~~~~~~nglee~~c~~~l~~ni~~p~~~dv~~~~gG~v~~~~~~~fP  316 (465)
T 3qac_A          244 IVRVQEGLHVIKPPSRAW-----EEREQG--SRGSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLP  316 (465)
T ss_dssp             EEEC-CCCC-----------------------------------CTTTSCCEEETTCTTTCSEEETTTEEEEEECTTTST
T ss_pred             EEEecCcccccCCcccch-----hhhhcc--cccccccCCCccccccceeccccccccccCCcccCCCceEEEeCHHHCC
Confidence            999999999999876431     111111  1344456799999999999999999999999999999999999999999


Q ss_pred             ccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEE
Q 046186          328 VLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFE  407 (436)
Q Consensus       328 ~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~  407 (436)
                      +|++||||+++++|+||||++|||||||+||+||++|+++|+||+++|+++|+++|++|||||||+||+|++++++++++
T Consensus       317 ~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP~g~~h~~~ag~e~~~  396 (465)
T 3qac_A          317 ILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFE  396 (465)
T ss_dssp             THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             CccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEECCCcEEEEEcCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCccccccccccccccCCC
Q 046186          408 WISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       408 ~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      |++|+++++|+.++|||++|+|++||.|
T Consensus       397 ~l~f~~s~np~~~~LaG~~sv~~~ip~e  424 (465)
T 3qac_A          397 WVSFKTSENAMFQSLAGRTSAIRSLPID  424 (465)
T ss_dssp             EEEEESSTTCCEEESSSSSBHHHHSCHH
T ss_pred             EEEEecCCCCcccccccchhhhhhCCHH
Confidence            9999999999999999999999999964

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=100.00  E-value=2.4e-101  Score=808.39  Aligned_cols=405  Identities=48%  Similarity=0.868  Sum_probs=336.7

Q ss_pred             cccCCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEE
Q 046186           24 QWQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGS  103 (436)
Q Consensus        24 ~~~~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~  103 (436)
                      ++++ ++|++++|+|++|+++|++|||.|++|+.++|+|+|+||+++|++|+||||++||||+|++|+||++|    +|+
T Consensus         4 ~~~~-~~c~~~~L~a~eP~~~~~se~G~~e~~~~~~~~L~~~gvs~~R~~i~pggl~lPh~~~A~ei~~V~qG----~g~   78 (496)
T 3ksc_A            4 QPQQ-NECQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRNALRRPYYSNAPQEIFIQQG----NGY   78 (496)
T ss_dssp             ---C-CTTCCSCCCCBCCSEEEEETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEC----CEE
T ss_pred             Cccc-cccccccCCcCCCccccCCCCcEEEeccccchhhccCCceEEEEEecCCCEeCceEcCCCEEEEEEeC----ceE
Confidence            3456 89999999999999999999999999999999999999999999999999999999999999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRN  183 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~  183 (436)
                      +|+|+|+|++||++++++.++  +++++.|.|+|+++|++||||+||+|++||++|+|+++|++|++||++|..||||++
T Consensus        79 ~G~v~p~~~e~f~~~~~~~~~--~~~~~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~  156 (496)
T 3ksc_A           79 FGMVFPGCPETFEEPQESEQG--EGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQM  156 (496)
T ss_dssp             EEEECTTCCCC-----------------CCCCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSS
T ss_pred             EEEEeCCCCccchhhhhcccc--cccccccchheeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCc
Confidence            999999999999877654432  356778999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeecCCChhhhhHhhhhh--hcccccccccccccCCHHHHhhhcCCCHHHHHHHh--hcCCCceeEEEEcCceeccC
Q 046186          184 PRKFHLAGNPHQEFQQQRQQE--RFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLR--SEKDYRGAIVTVRGQLQVAR  259 (436)
Q Consensus       184 ~~~f~laG~~~~~~~~~~~~~--~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~--~~~~~rG~Iv~~~~~l~~~~  259 (436)
                      +++|||||+++++++++++++  ++++...++|||+||++++||+||||+.++|+||+  ++++++|.||+|+++|++++
T Consensus       157 ~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v~~~l~~~~  236 (496)
T 3ksc_A          157 PRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIIS  236 (496)
T ss_dssp             CCEEESSSSCCCTTGGGCC-----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEECSSCCCCCC
T ss_pred             eeeeEecCCCccccccccccccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEecCcccccC
Confidence            999999999887664433311  11233445899999999999999999999999999  78888999999999999999


Q ss_pred             CCCcccccccc------cc--------------------hh---------------h-hh-----hcccccCCCCCCccc
Q 046186          260 PPRTQSQREYE------ED--------------------SS---------------E-YE-----RSRGRYGGDNGVEET  292 (436)
Q Consensus       260 p~~~~~~~~~~------~~--------------------~~---------------~-~~-----~~~~~~~~~ng~ee~  292 (436)
                      |+....+++++      ++                    ++               + .+     +++.|+...|||||+
T Consensus       237 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nGlee~  316 (496)
T 3ksc_A          237 PPEKQARHQRGSRQEEDEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGSQKGKSRRQGDNGLEET  316 (496)
T ss_dssp             CC-----------------------------------------------------------------------------C
T ss_pred             CchhhhchhhcccchhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcccc
Confidence            97644211100      00                    00               0 00     011122346999999


Q ss_pred             ceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEe
Q 046186          293 MCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVD  372 (436)
Q Consensus       293 ~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~  372 (436)
                      +|+||+++||++|+++|+|+|.||+++++|+.+||+|++||||+++++|+||||++|||||+|+||+||++|+++|+||+
T Consensus       317 ~c~~~l~~Ni~~p~~~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~  396 (496)
T 3ksc_A          317 VCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVN  396 (496)
T ss_dssp             CSSSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEEC
T ss_pred             ccchhhhccccccccCCcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          373 SYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       373 ~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      ++|+++|+++|++|||||||+||+|++++++++++|++|+++++|+.++|||++|+|++||.+
T Consensus       397 ~~g~~~f~~~l~~GDV~v~P~G~~H~~~a~~e~~~~l~f~~s~np~~~~LaG~~sv~~~~p~e  459 (496)
T 3ksc_A          397 CNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVINNLPLD  459 (496)
T ss_dssp             TTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESSTTCCEEESSSTTCTTTTSCHH
T ss_pred             CCCcEEEEEEecCCeEEEECCCCEEEEEeCCCCEEEEEEECCCCCccccccchhhhhhhCCHH
Confidence            999999999999999999999999999999899999999999999999999999999999964

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=100.00  E-value=1.3e-99  Score=790.17  Aligned_cols=386  Identities=44%  Similarity=0.786  Sum_probs=343.2

Q ss_pred             cCCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEE
Q 046186           26 QQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHG  105 (436)
Q Consensus        26 ~~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g  105 (436)
                      ++ ++|++++|+|++|+++|++|+|.+++|+++.|+|+|+||+++|++|+|||+++||||++++++||++|    +|++|
T Consensus         3 ~~-~~c~~~~l~a~ep~~~~~se~G~~e~w~~~~~~L~~~gvs~~r~~i~p~Gl~lPh~~~a~e~~~V~~G----~g~~G   77 (466)
T 3kgl_A            3 FP-NECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKG----EGLMG   77 (466)
T ss_dssp             TT-STTCCSCCCCBCCSEEEEETTEEEEECCTTSHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEC----EEEEE
T ss_pred             cc-cccccccCCCCCCcceeeCCCcEEEEECCCChhhccCCeEEEEEEECCCCEeCCeeCCCCeEEEEEeC----eEEEE
Confidence            34 88999999999999999999999999999999999999999999999999999999999999999999    99999


Q ss_pred             eeCCCCCCcccCCCCCCC------------------------Cc------------cCCcccccccceeeeeccCcEEEe
Q 046186          106 DPFPGYPETYQSPQQGGF------------------------GE------------SAGRSQQDSHQKIRRFRQGDIFAL  149 (436)
Q Consensus       106 ~v~pg~~et~~~~~~~~~------------------------~~------------~~~~~~~d~~~k~~~l~~GDv~~i  149 (436)
                      +|+|||||||++++++..                        ++            ++++++.|.|||+++|++||||+|
T Consensus        78 ~v~pgc~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~i  157 (466)
T 3kgl_A           78 RVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIAT  157 (466)
T ss_dssp             EECTTCCCCEEECCSSCCCC-----------------------------------------CCEEESCEEEEETTEEEEE
T ss_pred             EecCCCcchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEE
Confidence            999999999976542110                        00            013456799999999999999999


Q ss_pred             CCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcC
Q 046186          150 PAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFN  229 (436)
Q Consensus       150 PaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~  229 (436)
                      |+|++||++|+|+++|++++++|++|..||||+++++|||||+++++++.++    +++...+.|||+||++++||+|||
T Consensus       158 PaG~~~~~~N~g~e~L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~----~~~~~~~~ni~sGF~~e~La~Af~  233 (466)
T 3kgl_A          158 HPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIE----GREQQPQKNILNGFTPEVLAKAFK  233 (466)
T ss_dssp             CTTCEEEEECCSSSCEEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTST----TCTTCCBCCGGGGSCHHHHHHHHT
T ss_pred             CCCCcEEEEeCCCCcEEEEEEEcCCCcccccCCceeeeEecCCCcccccccc----ccccccCCCccccCCHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999876443221    223344689999999999999999


Q ss_pred             CCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccCCCCCCC
Q 046186          230 VDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKAD  309 (436)
Q Consensus       230 v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d  309 (436)
                      |+.++++||+++++++|.||+|+++|++++|...+       ++++        ...||++|++|+||+++||++|+++|
T Consensus       234 v~~e~~~kL~~~q~~~G~Iv~v~~~l~~~~p~~~~-------~~~~--------~~~~glee~~c~~r~~~Ni~~p~~~d  298 (466)
T 3kgl_A          234 IDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRS-------QRPQ--------EEVNGLEETICSARCTDNLDDPSNAD  298 (466)
T ss_dssp             SCHHHHHHHTCTTCCSCSEEECCSCCCCCCCCC-----------------------------CCSSCCCEEETTCGGGEE
T ss_pred             CCHHHHHHHhccccCceeEEEecCcccccCCcccc-------cccc--------cccCCccccccceeccccccCcccCC
Confidence            99999999999999899999999999999987532       0110        12499999999999999999999999


Q ss_pred             cccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEE
Q 046186          310 IYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIM  389 (436)
Q Consensus       310 ~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~  389 (436)
                      +|++.+|+++++|+.+||+|++|+||+++++|+||||++|||||+|+||+||++|+++|+||+++|+++|+++|++||||
T Consensus       299 ~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~  378 (466)
T 3kgl_A          299 VYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL  378 (466)
T ss_dssp             EEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             cccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCEEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          390 VVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       390 vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      |||+||+|++++++++++||+|+++++|+.++|||++++|++||.|
T Consensus       379 v~P~G~~H~~~ag~e~~~~l~~f~s~np~~~~LaG~~s~~~~lP~e  424 (466)
T 3kgl_A          379 SIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLE  424 (466)
T ss_dssp             EECTTCEEEEEECSSEEEEEEEESSSSCCEEESSSTTCTGGGSCHH
T ss_pred             EECCCCeEEEEcCCCCEEEEEEECCCCCccccccchhhhhhhCCHH
Confidence            9999999999999999999999999999999999999999999964

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=100.00  E-value=3.8e-93  Score=743.56  Aligned_cols=398  Identities=46%  Similarity=0.811  Sum_probs=337.9

Q ss_pred             ccCCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEE
Q 046186           25 WQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSH  104 (436)
Q Consensus        25 ~~~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~  104 (436)
                      +++ ++|++++|+|++|+++|+||+|.+++|+.++|+|+|+|++++|++|+|||+++||||++++|+||++|    +|++
T Consensus        22 ~~~-~~c~~~~l~a~eP~~~v~se~G~~~~~~~~~~~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G----~g~v   96 (459)
T 2e9q_A           22 QSP-RACRLENLRAQDPVRRAEAEAGFTEVWDQDNDEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQG----FGIR   96 (459)
T ss_dssp             -----CCCCSSCCCBCCCEEEEETTEEEEECCTTSHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEC----EEEE
T ss_pred             ccc-cccccccCCcCCCCceEecCCcEEEecCCCChhhccCceEEEEEEEcCCCEecceecCCceEEEEEee----EEEE
Confidence            345 89999999999999999999999999999999999999999999999999999999999999999999    9999


Q ss_pred             EeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCC
Q 046186          105 GDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNP  184 (436)
Q Consensus       105 g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~  184 (436)
                      |+|+|+|++||+++++.++ + ..++..|.|+++++|++||||+||+|++||++|+|+++|++|+++|++|..||||+++
T Consensus        97 g~v~p~~~~tf~~~~~~~~-~-~~~~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~  174 (459)
T 2e9q_A           97 GIAIPGCAETYQTDLRRSQ-S-AGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYL  174 (459)
T ss_dssp             EECCTTCCCCEEECCC---------CCCEEECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSC
T ss_pred             EEEeCCCcchhccchhhcc-c-cccccccccceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCccc
Confidence            9999999999987764221 1 1223568889999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecCCChhhhhHhhhhh----hcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCC
Q 046186          185 RKFHLAGNPHQEFQQQRQQE----RFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARP  260 (436)
Q Consensus       185 ~~f~laG~~~~~~~~~~~~~----~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p  260 (436)
                      ++|||||++.++++++++++    +.+++..++|||++||++|||+||+|+.++++||+++++++|+||++++++++++|
T Consensus       175 ~~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~~~l~~~~P  254 (459)
T 2e9q_A          175 RKFYLAGRPEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLP  254 (459)
T ss_dssp             CEEESSSCCCCCSSTTCC------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECCSSCCTTTT
T ss_pred             ceeeccCCccccchhhhccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeCCcccccCC
Confidence            99999999766433221111    11233556899999999999999999999999999999989999999999998888


Q ss_pred             CCcccccccccchhhhhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEE
Q 046186          261 PRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGL  340 (436)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~  340 (436)
                      +..+++    +++.... .+.+ ++.||++|++|+|+++|||++|+++|+|++.+|+++++|+.+||+|++|+||+++++
T Consensus       255 ~~~~~e----~~~~~~~-~~~~-~~~~g~~e~~~~~~l~~n~~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~  328 (459)
T 2e9q_A          255 EKDEEE----RSRGRYI-ESES-ESENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGV  328 (459)
T ss_dssp             C------------------------------CGGGSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEE
T ss_pred             ccchhh----hcccccc-cccc-cccCCccccccceeeeecccccccCCcccCCCeeEEEeccccCccccccccceEEEE
Confidence            643200    0001000 0111 125999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCcc
Q 046186          341 LHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMIS  420 (436)
Q Consensus       341 L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~  420 (436)
                      |+||||++|||||+|+||+||++|+++|+|++++|+++|+++|++|||||||+|++|++.+++++++||+|+++++|...
T Consensus       329 l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G~~H~~~ng~~~~~~l~~~~s~~~~~~  408 (459)
T 2e9q_A          329 LYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITN  408 (459)
T ss_dssp             ECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSSSCCEE
T ss_pred             eeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCCCEEEEEeCCCCeEEEEEecCCCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999778889999999999999999


Q ss_pred             ccccccccccccCCC
Q 046186          421 PLSGRTSVMRGKGRR  435 (436)
Q Consensus       421 ~LaG~~sv~~~lp~e  435 (436)
                      +|||++++|++||.+
T Consensus       409 ~laG~~s~~~~~p~~  423 (459)
T 2e9q_A          409 LLAGRVSQMRMLPLG  423 (459)
T ss_dssp             ESSSSSSHHHHSCHH
T ss_pred             eecchhHHHHhCCHH
Confidence            999999999999854

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=100.00  E-value=1.1e-91  Score=738.00  Aligned_cols=406  Identities=48%  Similarity=0.814  Sum_probs=341.7

Q ss_pred             ccCCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEE
Q 046186           25 WQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSH  104 (436)
Q Consensus        25 ~~~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~  104 (436)
                      +++ ++|++++|+|++|+++|+||+|.||+|++++|+|+|+||++++++|+|||+++||||++++|+||++|    +|++
T Consensus         7 ~~~-~~c~~~~l~a~~p~~~~~se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~~a~~~~yV~~G----~g~~   81 (510)
T 3c3v_A            7 PEE-NACQFQRLNAQRPDNRIESEGGYIETWNPNNQEFECAGVALSRLVLRRNALRRPFYSNAPQEIFIQQG----RGYF   81 (510)
T ss_dssp             CCT-TTTCCSCCCCBCCCEEEEETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEEC----CEEE
T ss_pred             ccc-cccccccCCCCCchhhhccCCceEEEeCCCCcccccCcEEEEEEEECCCCCccceecCCCeEEEEEeC----EEEE
Confidence            445 89999999999999999999999999999999999999999999999999999999999999999999    9999


Q ss_pred             EeeCCCCCCcccCCCCCC---CC-----c----cCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          105 GDPFPGYPETYQSPQQGG---FG-----E----SAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       105 g~v~pg~~et~~~~~~~~---~~-----~----~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      |+|+||||+||+++++.+   ++     +    ++.++..|.|+|+++|++||||+||+|++||+||+|+++|++|+++|
T Consensus        82 g~v~pg~~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d  161 (510)
T 3c3v_A           82 GLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTD  161 (510)
T ss_dssp             EEECTTCCCCEEEECCC--------------------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEEC
T ss_pred             EEEeCCCccccccccccccccccccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeC
Confidence            999999999999876411   10     0    01233467889999999999999999999999999999999999999


Q ss_pred             cCCCCCcCCCCCceeeecCCChhhhhHhhh--------------------------------------hhhccccccccc
Q 046186          173 VANNDNQLDRNPRKFHLAGNPHQEFQQQRQ--------------------------------------QERFGGHQQCNN  214 (436)
Q Consensus       173 ~~n~~nqld~~~~~f~laG~~~~~~~~~~~--------------------------------------~~~~~~~~~~~n  214 (436)
                      ++|..||||+++++|||||++.+++++.++                                      +.++++...+.|
T Consensus       162 ~~n~~nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  241 (510)
T 3c3v_A          162 TNNNDNQLDQFPRRFNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGN  241 (510)
T ss_dssp             TTBTTCCSCSCCCCEESSCCCCCTTGGGCC------------------------------------------------CC
T ss_pred             CCCcccccccccceeEecCCcccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999997764432200                                      000112233579


Q ss_pred             ccccCCHHHHhhhcCCC-HHHHHHHhhcCC--CceeEEEEcCceeccCCCCcccccc-ccc--c-hhhhhh----ccccc
Q 046186          215 VFCGFDTRILAEAFNVD-ERLVRRLRSEKD--YRGAIVTVRGQLQVARPPRTQSQRE-YEE--D-SSEYER----SRGRY  283 (436)
Q Consensus       215 v~~gf~~~vLa~af~v~-~~~v~~l~~~~~--~rG~Iv~~~~~l~~~~p~~~~~~~~-~~~--~-~~~~~~----~~~~~  283 (436)
                      ||+|||+++||+||||+ .+++++|+++++  ++|.||+++++|++++|+.....++ +++  + ++..+.    .++|+
T Consensus       242 i~sgF~~~~La~af~v~~~~~~~~l~~~~~~~~~g~Iv~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (510)
T 3c3v_A          242 IFSGFTPEFLAQAFQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKRGADEEEEYDEDEYEYDEEDRRRGRGSR  321 (510)
T ss_dssp             TGGGSCHHHHHHHHTCCCHHHHHHHTTTTCCTTSCSEEECTTCCCCCCC-------------------------------
T ss_pred             ceecCCHHHHHHHhCCCHHHHHHHhhccccccccccEEEeCCcccccCCchhccccchhhhhhhhccccccccccccccc
Confidence            99999999999999999 999999999888  8999999999999998864311111 111  1 111110    11222


Q ss_pred             CCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEe
Q 046186          284 GGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAIS  363 (436)
Q Consensus       284 ~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~  363 (436)
                      .+.||++|++|+|++++||++|+++|+|++.+|+++++++.+||+|++|+||+++++|.||||++|||||+|+||+||++
T Consensus       322 ~~~ng~~e~~c~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~  401 (510)
T 3c3v_A          322 GSGNGIEETICTATVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALR  401 (510)
T ss_dssp             ----CTTTTGGGCCCEEECSSCSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEE
T ss_pred             cccCCccccccceeeeeccCccccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEe
Confidence            24599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          364 GSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       364 G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      |+++++|++++|+++|+.+|++|||||||+|++|++.+++++++|++|+++++|...+|||++++|++||.+
T Consensus       402 G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~Ng~e~l~~l~f~~s~~p~~~~LaG~~svf~~lp~e  473 (510)
T 3c3v_A          402 GRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVIDNLPEE  473 (510)
T ss_dssp             SEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESSSSCCEEESSSTTSTTTTSCHH
T ss_pred             CEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEeCCCCEEEEEEECCCCcceeecccHhHHHHhCCHH
Confidence            999999999999999999999999999999999999668899999999999999999999999999999853

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=100.00  E-value=1.4e-90  Score=727.44  Aligned_cols=404  Identities=46%  Similarity=0.826  Sum_probs=326.8

Q ss_pred             ccCCCCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEE
Q 046186           25 WQQPNDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSH  104 (436)
Q Consensus        25 ~~~~~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~  104 (436)
                      +++ ++|++++|+|++|+++|+||+|.+++|+.++++|+|+|++++|++|+|||+++||||++++|+||++|    +|++
T Consensus         7 ~~~-~~c~~~~l~a~~P~~~v~se~G~~e~~~~~~~~l~~~gvs~~r~~l~Pggl~~Ph~~~a~ei~yV~~G----~g~~   81 (476)
T 1fxz_A            7 PQQ-NECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQG----KGIF   81 (476)
T ss_dssp             ----CTTCCSCCCCBCCSCEEEETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEC----CEEE
T ss_pred             ccc-cccccccCCCCCCceEEecCCceEEeeCCCChhhccCceEEEEEEEcCCCEecceecCCceEEEEEec----EEEE
Confidence            345 89999999999999999999999999999999999999999999999999999999999999999999    9999


Q ss_pred             EeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCC
Q 046186          105 GDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNP  184 (436)
Q Consensus       105 g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~  184 (436)
                      |+|+|||+|||+++++.. .++++++..|.|+++++|++||||+||+|++||++|+|+++|++|+++|++|+.||||+++
T Consensus        82 g~v~pg~~et~~~~~~~~-~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~  160 (476)
T 1fxz_A           82 GMIYPGCPSTFEEPQQPQ-QRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMP  160 (476)
T ss_dssp             EEECTTCCCC-------------------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSC
T ss_pred             EEEcCCCcchhhcccccc-ccccccccccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCcc
Confidence            999999999998875321 1222334668889999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecCCChhhhhHhhhh----------hhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCC--CceeEEEEc
Q 046186          185 RKFHLAGNPHQEFQQQRQQ----------ERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD--YRGAIVTVR  252 (436)
Q Consensus       185 ~~f~laG~~~~~~~~~~~~----------~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~--~rG~Iv~~~  252 (436)
                      ++|||||++.+++++++++          .++++...+.|||+|||++|||+||+|+.++++||+++++  ++|+||+++
T Consensus       161 ~~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~  240 (476)
T 1fxz_A          161 RRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVK  240 (476)
T ss_dssp             CEEESSSSCCCTTHHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECS
T ss_pred             ceeeccCCccccccccccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeC
Confidence            9999999987643322110          0112344568999999999999999999999999999888  899999999


Q ss_pred             CceeccCCCCcccccc----cccchhhhhh-------------cccccCCCCCCcccceeeecccccCCCCCCCcccCCC
Q 046186          253 GQLQVARPPRTQSQRE----YEEDSSEYER-------------SRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGA  315 (436)
Q Consensus       253 ~~l~~~~p~~~~~~~~----~~~~~~~~~~-------------~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~  315 (436)
                      +++++++|+..+.+.+    .+++++..+.             .+.++ ..||++|++|+|++++||++|+++|+|++.+
T Consensus       241 ~~l~~~~P~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ng~~e~~~~~~l~~ni~~~~~~~~~~~~g  319 (476)
T 1fxz_A          241 GGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKS-RRNGIDETICTMRLRHNIGQTSSPDIYNPQA  319 (476)
T ss_dssp             SCCCCCCC-------------------------------------------------CTTCCCEEECSSSSCCSEEETTT
T ss_pred             CcccccCCccchhhhccccchhhhhccccccccccccccccccccccc-ccCCccccccceeeeccccccccCCcccCCC
Confidence            9999999864321100    1111111110             00111 2499999999999999999999999999999


Q ss_pred             eEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCC
Q 046186          316 GHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF  395 (436)
Q Consensus       316 G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~  395 (436)
                      |+++++++.+||+|++++|++++++|.||||++|||||+|+||.||++|+++++|++++|+++++.+|++|||+|||+|+
T Consensus       320 G~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~  399 (476)
T 1fxz_A          320 GSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNF  399 (476)
T ss_dssp             EEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTC
T ss_pred             eEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          396 AVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       396 ~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      +|++.+++++++|++|+++++|...+|||++++|++||.+
T Consensus       400 ~H~~~ng~~~l~~l~f~~s~~p~~~~laG~~s~~~~~p~~  439 (476)
T 1fxz_A          400 VVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEE  439 (476)
T ss_dssp             EEEEEECSTTEEEEEEESSSSCCEEESSSTTCTGGGSCHH
T ss_pred             eEEEEeCCCCEEEEEEECCCCCceeEccchhHHHHhCCHH
Confidence            9999668889999999999999999999999999999854

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=100.00  E-value=3.6e-70  Score=569.20  Aligned_cols=318  Identities=19%  Similarity=0.305  Sum_probs=271.7

Q ss_pred             ceeecCCcEEEE---eCCCCccccccc-eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCC
Q 046186           43 NRVECEAGVVET---WDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSP  118 (436)
Q Consensus        43 ~~~~se~G~~e~---~~~~~p~l~~~g-v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~  118 (436)
                      +++++++|.++.   |+.+++.|++++ +++++++|+||++.+||||+++||+||++|    ++++++++++|.      
T Consensus        58 ~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G----~g~v~~v~~~~~------  127 (445)
T 2cav_A           58 TLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEG----QAILVLVNPDGR------  127 (445)
T ss_dssp             EEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEEEESSEEEEEEEES----EEEEEEEETTEE------
T ss_pred             ceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCcCCCCceEEEEEeC----EEEEEEEeCCCC------
Confidence            368999999999   555678999987 999999999999999998889999999999    999999988652      


Q ss_pred             CCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC-CCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhh
Q 046186          119 QQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEF  197 (436)
Q Consensus       119 ~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~  197 (436)
                                        +++.|++||+++||+|++||++|+| ++++++++++++++.    ++.++.|||+|++.+  
T Consensus       128 ------------------~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~----pg~~~~F~laG~~~~--  183 (445)
T 2cav_A          128 ------------------DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRR----PGTVEDFFLSSTKRL--  183 (445)
T ss_dssp             ------------------EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSS----TTCCCEEESSCCSSC--
T ss_pred             ------------------EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCC----CCceeeeeccCCCch--
Confidence                              4689999999999999999999998 799999999997764    346899999999655  


Q ss_pred             hHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCc-eeccCCCCcccccccccchhhh
Q 046186          198 QQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQ-LQVARPPRTQSQREYEEDSSEY  276 (436)
Q Consensus       198 ~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~-l~~~~p~~~~~~~~~~~~~~~~  276 (436)
                                     .+||++||++||++||+++.+++++|+.+++++|+||+++++ ++.+.+               .
T Consensus       184 ---------------~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~g~Iv~~~~~~~~~~~~---------------~  233 (445)
T 2cav_A          184 ---------------PSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISK---------------H  233 (445)
T ss_dssp             ---------------CCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECCCC-----------------------
T ss_pred             ---------------hhhhhcCCHHHHHHHhCCCHHHHHhhhcccCCCCcEEEeCCcchhhhcc---------------c
Confidence                           699999999999999999999999999877778999998753 111110               0


Q ss_pred             hhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCc
Q 046186          277 ERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAH  356 (436)
Q Consensus       277 ~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~  356 (436)
                      +. .   .+.||++|++|+|++.      +++|+|+|.+|+++++|+.+||+|++||||+++++|+||||++|||||||+
T Consensus       234 ~~-~---~~~~g~~~~~~~~~l~------~~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~  303 (445)
T 2cav_A          234 AQ-S---SSRKTLSSQDKPFNLR------SRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRAT  303 (445)
T ss_dssp             ----------------CCCEETT------SSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCE
T ss_pred             cc-c---cCCCCCCCcccceecc------ccCCCccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCc
Confidence            00 0   1248999999988765      567789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeeEEEEEEeCCCC--------e--EEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecC-CCCcccccc-
Q 046186          357 SIMYAISGSCHVQVVDSYGR--------S--VYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTND-NAMISPLSG-  424 (436)
Q Consensus       357 ei~yV~~G~grv~vv~~~G~--------~--~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~-~p~~~~LaG-  424 (436)
                      ||+||++|+++++||+++|.        +  +++++|++|||||||+||+|++.++ ++++|++|++++ +|.+++||| 
T Consensus       304 ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~-~~~~~v~f~~~~~~~~~~~laG~  382 (445)
T 2cav_A          304 VILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA-SDLNMVGIGVNAENNERNFLAGH  382 (445)
T ss_dssp             EEEEEEESCEEEEEEEC-----------CCEEEEEEECTTCEEEECTTCCEEEEES-SSEEEEEEEESCTTCCEEESSSS
T ss_pred             EEEEEEeeEEEEEEEeCCCcccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC-CCeEEEEEEccCCCCCcEEcccc
Confidence            99999999999999999853        4  7999999999999999999999777 789999999887 788999999 


Q ss_pred             ccccccccCCC
Q 046186          425 RTSVMRGKGRR  435 (436)
Q Consensus       425 ~~sv~~~lp~e  435 (436)
                      ++|+|++||.|
T Consensus       383 ~~sv~~~~p~~  393 (445)
T 2cav_A          383 KENVIRQIPRQ  393 (445)
T ss_dssp             TTBSGGGSCHH
T ss_pred             hhhhhhhCCHH
Confidence            99999999964

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=100.00  E-value=1.6e-67  Score=544.68  Aligned_cols=321  Identities=19%  Similarity=0.294  Sum_probs=276.4

Q ss_pred             ceeecCCcEEEEeCC---CCccccc-cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCC
Q 046186           43 NRVECEAGVVETWDP---GHEQFQC-AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSP  118 (436)
Q Consensus        43 ~~~~se~G~~e~~~~---~~p~l~~-~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~  118 (436)
                      +++++|+|.+++|..   +.+.|+| .++++++++|+|||+++|||.+|++++||++|    +|++|+|+|+|       
T Consensus        16 ~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G----~g~~g~V~~~~-------   84 (418)
T 3s7i_A           16 TRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQG----QATVTVANGNN-------   84 (418)
T ss_dssp             EEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEES----EEEEEEECSSC-------
T ss_pred             ceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeeeeCCCCeEEEEEEe----eEEEEEEecCC-------
Confidence            579999999999963   5689999 68999999999999999998779999999999    99999999864       


Q ss_pred             CCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC-CCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhh
Q 046186          119 QQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEF  197 (436)
Q Consensus       119 ~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~  197 (436)
                                       .++++|++||||+||+|++||++|.| +++|+++++.++++    .|+.++.|||||+.++  
T Consensus        85 -----------------~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~----~pg~~~~f~laG~~~~--  141 (418)
T 3s7i_A           85 -----------------RKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVN----TPGQFEDFFPASSRDQ--  141 (418)
T ss_dssp             -----------------EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESS----BTTBCCEECSSCCSSC--
T ss_pred             -----------------EEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcC----CCCccceeeccCCcch--
Confidence                             34789999999999999999999976 46899998888765    3778999999999654  


Q ss_pred             hHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcC--------------------CCceeEEEEcC-cee
Q 046186          198 QQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEK--------------------DYRGAIVTVRG-QLQ  256 (436)
Q Consensus       198 ~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~--------------------~~rG~Iv~~~~-~l~  256 (436)
                                     .+||++||++|||+||+++.+++++|+..+                    +.+|.||++++ +++
T Consensus       142 ---------------~s~~~gf~~evLa~af~v~~~~v~kl~~~~~~~~~~~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~  206 (418)
T 3s7i_A          142 ---------------SSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSENNEGVIVKVSKEHVE  206 (418)
T ss_dssp             ---------------CCGGGGSCHHHHHHHHTSCHHHHHHHTTSCC--------------------CCCSEEECCHHHHH
T ss_pred             ---------------hHHhhcCCHHHHHHHHCcCHHHHHhhhcccccccccccccccccccccccccCCceEEcChhhhh
Confidence                           799999999999999999999999999432                    45799999975 455


Q ss_pred             ccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCC-Cccccccce
Q 046186          257 VARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNL-PVLRWIQLS  335 (436)
Q Consensus       257 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~-P~L~~l~ls  335 (436)
                      .++|+...                +   ..++++++ |.++..|||.+ + .|.|+|.+|+++++++.+| |+|+.+|||
T Consensus       207 ~l~~~~~~----------------~---~~~~~~~~-~~~~~~~nl~~-~-~p~~~n~~G~~~~~~~~~~~p~L~~~gis  264 (418)
T 3s7i_A          207 ELTKHAKS----------------V---SKKGSEEE-GDITNPINLRE-G-EPDLSNNFGKLFEVKPDKKNPQLQDLDMM  264 (418)
T ss_dssp             HHHTTCBC---------------------------C-TTCCCCEETTC-S-CCSEEETTEEEEEECSBTTBHHHHHHTCE
T ss_pred             hccccccc----------------c---CCCCcCcc-cCCCccccccc-C-CCceeCCCCeEEEechHHcchhhccCCee
Confidence            55543211                0   12566655 88889999995 4 4468899999999999999 999999999


Q ss_pred             EEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC------------------------eEEEEEecCccEEEE
Q 046186          336 AERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR------------------------SVYDGEVRRGQIMVV  391 (436)
Q Consensus       336 ~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~------------------------~~~~~~l~~Gdv~vV  391 (436)
                      +++++|+||||++|||||||+||+||++|+++++||++++.                        ++++.+|++||||||
T Consensus       265 ~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vv  344 (418)
T 3s7i_A          265 LTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIM  344 (418)
T ss_dssp             EEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEECTTCEEEE
T ss_pred             EEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeeeCCCCEEEE
Confidence            99999999999999999999999999999999999998763                        678999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEEEecC-CCCccccccc-cccccccCCC
Q 046186          392 PQNFAVVKRAGGAEFEWISFKTND-NAMISPLSGR-TSVMRGKGRR  435 (436)
Q Consensus       392 P~g~~h~~~ag~e~~~~l~f~~s~-~p~~~~LaG~-~sv~~~lp~e  435 (436)
                      |+||+|+++++. +|+|++|.+++ +|.+++|||+ +|+|++||.|
T Consensus       345 P~G~~~~~~~~~-~l~~v~f~~~~~~~~~~~LAG~~~sv~~~~~~e  389 (418)
T 3s7i_A          345 PAAHPVAINASS-ELHLLGFGINAENNHRIFLAGDKDNVIDQIEKQ  389 (418)
T ss_dssp             CTTCCEEEEESS-CEEEEEEEESCTTCCEEESSSSTTBHHHHSCHH
T ss_pred             CCCCEEEEECCC-CEEEEEEEcCCCCCcceEccCchhhhhhcCCHH
Confidence            999999997764 59999999887 7899999999 6999999854

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=100.00  E-value=5.8e-67  Score=543.76  Aligned_cols=318  Identities=21%  Similarity=0.314  Sum_probs=278.1

Q ss_pred             ceeecCCcEEEE---eCCCCccccccc-eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCC
Q 046186           43 NRVECEAGVVET---WDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSP  118 (436)
Q Consensus        43 ~~~~se~G~~e~---~~~~~p~l~~~g-v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~  118 (436)
                      .++++++|.++.   |+.+++.|++++ +++++++|+||++++|||++++||+||++|    +|++++++++|.      
T Consensus        33 ~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G----~g~v~~v~~~~~------  102 (434)
T 2ea7_A           33 TLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNG----TAVLTLVNPDSR------  102 (434)
T ss_dssp             EEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEES----EEEEEEECSSCE------
T ss_pred             ceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCccCCCceEEEEEec----EEEEEEEeCCCC------
Confidence            369999999998   777889999998 999999999999999997779999999999    999999988653      


Q ss_pred             CCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC-CCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhh
Q 046186          119 QQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEF  197 (436)
Q Consensus       119 ~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~  197 (436)
                                        .++.|++||+++||+|++||++|+| +++|++++++++++..    +.+++|+|+|++.+  
T Consensus       103 ------------------~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~p----g~~~~f~l~g~~~~--  158 (434)
T 2ea7_A          103 ------------------DSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNP----HRFQDFFLSSTEAQ--  158 (434)
T ss_dssp             ------------------EEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBT----TBCCEEECSCCSSC--
T ss_pred             ------------------EEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCC----CceeeeeecCCcch--
Confidence                              3689999999999999999999998 7899999999877643    45789999998654  


Q ss_pred             hHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHh-hcCC---------CceeEEEEcCc-eeccCCCCcccc
Q 046186          198 QQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLR-SEKD---------YRGAIVTVRGQ-LQVARPPRTQSQ  266 (436)
Q Consensus       198 ~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~-~~~~---------~rG~Iv~~~~~-l~~~~p~~~~~~  266 (436)
                                     .+||++||++|||+||+++.+++++|+ ++++         ++|+||+++++ ++.+        
T Consensus       159 ---------------~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~~--------  215 (434)
T 2ea7_A          159 ---------------QSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVIVELKREQIQEL--------  215 (434)
T ss_dssp             ---------------CCGGGGSCHHHHHHHHTSCHHHHHHHHTCC---------CCCSSSEEECCHHHHHHH--------
T ss_pred             ---------------hhhhhcCCHHHHHHHhCCCHHHHHhhhhcccccccccccccccceEEECCcccChhh--------
Confidence                           689999999999999999999999999 6653         47999998643 1110        


Q ss_pred             cccccchhhhhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCce
Q 046186          267 REYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAM  346 (436)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam  346 (436)
                             .+..  .  ..+.||+++++|+|++.      +++|.|++.+|+++++++.+||+|++|+||+++++|+||||
T Consensus       216 -------~~~~--~--~~~~~g~~~~~~~~~l~------~~~p~~~~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m  278 (434)
T 2ea7_A          216 -------MKHA--K--SSSRKELSSQDEPFNLR------NSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGAL  278 (434)
T ss_dssp             -------HTTS--B--CCCSSCTTCSSSCEETT------SSCCSEEETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEE
T ss_pred             -------cccc--c--ccCCCCCCCcccceeec------cCCCceeCCCcEEEEEChhhCccccccCcceEEEEEcCCee
Confidence                   0000  0  01248999999988765      56778999999999999999999999999999999999999


Q ss_pred             ecccccCCCcEEEEEEeeeEEEEEEeCCC----------C--eEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEec
Q 046186          347 MVPHWNLNAHSIMYAISGSCHVQVVDSYG----------R--SVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN  414 (436)
Q Consensus       347 ~~PHwh~~A~ei~yV~~G~grv~vv~~~G----------~--~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s  414 (436)
                      ++|||||+|+||+||++|+++|+|++++|          +  ++|+++|++|||||||+|++|++.+. ++++|++|+++
T Consensus       279 ~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~-~~~~~v~f~~~  357 (434)
T 2ea7_A          279 LLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT-SNLNFFAFGIN  357 (434)
T ss_dssp             EEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES-SSEEEEEEEET
T ss_pred             eccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC-CCeEEEEEECC
Confidence            99999999999999999999999999976          3  38999999999999999999999777 78999999988


Q ss_pred             C-CCCcccccc-ccccccccCCC
Q 046186          415 D-NAMISPLSG-RTSVMRGKGRR  435 (436)
Q Consensus       415 ~-~p~~~~LaG-~~sv~~~lp~e  435 (436)
                      + ++.+++||| ++|+|++||.|
T Consensus       358 ~~~~~~~~laG~~~sv~~~~p~~  380 (434)
T 2ea7_A          358 AENNRRNFLAGGKDNVMSEIPTE  380 (434)
T ss_dssp             CTTCCEEESSSSTTBGGGGSCHH
T ss_pred             CCCCCceecccchhhhhhhCCHH
Confidence            7 678999999 99999999964

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=100.00  E-value=8.4e-67  Score=540.23  Aligned_cols=321  Identities=19%  Similarity=0.324  Sum_probs=279.7

Q ss_pred             CCCceeecCCcEEEE---eCCCCccccccc-eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcc
Q 046186           40 EPNNRVECEAGVVET---WDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETY  115 (436)
Q Consensus        40 eP~~~~~se~G~~e~---~~~~~p~l~~~g-v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~  115 (436)
                      ++..++++++|.++.   |+.+.+.|++++ +++++++|+||++.+||||+++||+||++|    +|++++|+++|.   
T Consensus        18 ~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G----~g~v~~v~~~~~---   90 (416)
T 1uij_A           18 SFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSG----RAILTLVNNDDR---   90 (416)
T ss_dssp             SEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEES----CEEEEEECSSCE---
T ss_pred             cccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccccCCCceEEEEEee----EEEEEEEECCCC---
Confidence            344579999999998   666778999997 999999999999999997789999999999    999999988653   


Q ss_pred             cCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC-CCcEEEEEEEecCCCCCcCCCCCceeeecCCCh
Q 046186          116 QSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPH  194 (436)
Q Consensus       116 ~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~  194 (436)
                                           .++.|++||+++||+|++||++|+| +++|++++++++++.    ++.+++|+|+|++.
T Consensus        91 ---------------------~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~----pg~~~~f~l~g~~~  145 (416)
T 1uij_A           91 ---------------------DSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNK----PGRYDDFFLSSTQA  145 (416)
T ss_dssp             ---------------------EEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSB----TTBCCEEESSCBSS
T ss_pred             ---------------------eEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCC----CCcceeeeecCCcc
Confidence                                 3689999999999999999999995 999999999997654    34578999999864


Q ss_pred             hhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHh-hcCC----CceeEEEEcCc-eeccCCCCcccccc
Q 046186          195 QEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLR-SEKD----YRGAIVTVRGQ-LQVARPPRTQSQRE  268 (436)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~-~~~~----~rG~Iv~~~~~-l~~~~p~~~~~~~~  268 (436)
                      +                 .+||++||++|||+||+++.+++++|+ ++++    ++|+||+++++ ++.++         
T Consensus       146 ~-----------------~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~~~~~~~~~---------  199 (416)
T 1uij_A          146 Q-----------------QSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLS---------  199 (416)
T ss_dssp             C-----------------CCGGGGSCHHHHHHHHTSCHHHHHHHHTCTTCGGGSBSSSEEECCHHHHHHHT---------
T ss_pred             c-----------------chhhhcCCHHHHHHHhCcCHHHHHhhhhccccccccCcceEEEeCCcccchhh---------
Confidence            4                 589999999999999999999999999 7663    67999998643 11110         


Q ss_pred             cccchhhhhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceec
Q 046186          269 YEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMV  348 (436)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~  348 (436)
                            +.. ..   .+.||++++.|+|++.      +++|+|++.+|+++++++.+||+|++|+||+++++|+||||++
T Consensus       200 ------~~~-~~---~~~~g~~~~~~~~~l~------~~~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~  263 (416)
T 1uij_A          200 ------RRA-KS---SSRKTISSEDEPFNLR------SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLL  263 (416)
T ss_dssp             ------SSC-BC---CCGGGGGCSSSCEETT------SSCCSEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEE
T ss_pred             ------hcc-cc---cCCCCCCCcccceecc------ccCCCccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEec
Confidence                  000 00   1238899999988765      5677899999999999999999999999999999999999999


Q ss_pred             ccccCCCcEEEEEEeeeEEEEEEeCCCC-------------eEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecC
Q 046186          349 PHWNLNAHSIMYAISGSCHVQVVDSYGR-------------SVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTND  415 (436)
Q Consensus       349 PHwh~~A~ei~yV~~G~grv~vv~~~G~-------------~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~  415 (436)
                      |||||+|+||+||++|+++++|++++|.             ++|+++|++|||||||+|++|++.+. ++|+|++|++++
T Consensus       264 pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~-~~~~~l~f~~~~  342 (416)
T 1uij_A          264 PHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT-SNLNFLAFGINA  342 (416)
T ss_dssp             EEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEEECTTCCEEEEES-SSEEEEEEEETC
T ss_pred             ceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC-CCeEEEEEEcCC
Confidence            9999999999999999999999999873             48999999999999999999999777 799999999987


Q ss_pred             -CCCcccccc-ccccccccCCC
Q 046186          416 -NAMISPLSG-RTSVMRGKGRR  435 (436)
Q Consensus       416 -~p~~~~LaG-~~sv~~~lp~e  435 (436)
                       +|.+++||| ++++|++||.|
T Consensus       343 ~~~~~~~laG~~~sv~~~~p~~  364 (416)
T 1uij_A          343 ENNQRNFLAGEKDNVVRQIERQ  364 (416)
T ss_dssp             TTCCEEESSSSTTBSGGGSCHH
T ss_pred             CCCcceecccchhhHHHhCCHH
Confidence             889999999 89999999864

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=100.00  E-value=1e-62  Score=505.75  Aligned_cols=301  Identities=20%  Similarity=0.304  Sum_probs=258.5

Q ss_pred             ceeecCCcEEEE---eCCCCccccccc-eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCC
Q 046186           43 NRVECEAGVVET---WDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSP  118 (436)
Q Consensus        43 ~~~~se~G~~e~---~~~~~p~l~~~g-v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~  118 (436)
                      .++++++|.+++   |+.++|.|+|++ +++++++|+|||+++||||++++|+||++|    +|++++|+++|.      
T Consensus        24 ~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G----~~~v~~v~~~~~------   93 (397)
T 2phl_A           24 TLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSG----SAILVLVKPDDR------   93 (397)
T ss_dssp             EEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEES----EEEEEEEETTTE------
T ss_pred             ceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEecCCCeEEEEEee----eEEEEEEeCCCc------
Confidence            369999999999   677789999997 999999999999999999999999999999    999999998753      


Q ss_pred             CCCCCCccCCcccccccceeeeeccCcE------EEeCCCCeEEEeccC-CCcEEEEEEEecCCCCCcCCCCCceeeecC
Q 046186          119 QQGGFGESAGRSQQDSHQKIRRFRQGDI------FALPAGVAHWCYNEG-STPVVAVVLLDVANNDNQLDRNPRKFHLAG  191 (436)
Q Consensus       119 ~~~~~~~~~~~~~~d~~~k~~~l~~GDv------~~iPaG~~h~~~N~g-~e~l~~v~~~d~~n~~nqld~~~~~f~laG  191 (436)
                                        .++.|++||+      ++||+|++||++|.| ++++++|++++++|+     +.+++|+|+|
T Consensus        94 ------------------~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~-----~~~~~f~L~G  150 (397)
T 2phl_A           94 ------------------REYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNN-----PQIHEFFLSS  150 (397)
T ss_dssp             ------------------EEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSS-----SSCCEEECCC
T ss_pred             ------------------EEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCC-----ccceeeeccC
Confidence                              3689999999      999999999999999 789999999998764     2678999999


Q ss_pred             CChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHh-hcCC-CceeEEEEcCceeccCCCCccccccc
Q 046186          192 NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLR-SEKD-YRGAIVTVRGQLQVARPPRTQSQREY  269 (436)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~-~~~~-~rG~Iv~~~~~l~~~~p~~~~~~~~~  269 (436)
                      +..+                 .+||++||++|||+||+++.+++++|+ ++++ ++|.||+++++.      . .     
T Consensus       151 ~~~~-----------------~s~~~~~~~~vLa~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~~~------~-~-----  201 (397)
T 2phl_A          151 TEAQ-----------------QSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQ------I-K-----  201 (397)
T ss_dssp             BTTB-----------------CCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTT------H-H-----
T ss_pred             CCch-----------------hHHhhcCCHHHHHHHhCCCHHHHHhhhhcccccccCceEEcCccc------c-h-----
Confidence            8543                 689999999999999999999999999 5543 578999987531      0 0     


Q ss_pred             ccchhhhhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecc
Q 046186          270 EEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVP  349 (436)
Q Consensus       270 ~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~P  349 (436)
                        +..+... .   ...+|+++               ..|+|+|.+|+++++|+.+      ++||+++++|+||||++|
T Consensus       202 --~~~~~~~-~---~~~~~l~~---------------~~p~~~n~~G~~~~v~~~~------l~is~a~v~l~pG~~~~P  254 (397)
T 2phl_A          202 --ELSKHAK-S---SSRKSLSK---------------QDNTIGNEFGNLTERTDNS------LNVLISSIEMEEGALFVP  254 (397)
T ss_dssp             --HHHHHHH-T---C------------------------CEEEETTEEEEEEEETT------TTEEEEEEEECTTEEEEE
T ss_pred             --hhhccCC-C---cccccccc---------------cCCcccCCCCeEEEEeecc------CCeeEEEEEEcCCcEeee
Confidence              0001100 0   01244432               3478999999999999988      799999999999999999


Q ss_pred             cccCCCcEEEEEEeeeEEEEEEeC------CCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecC-CCCcccc
Q 046186          350 HWNLNAHSIMYAISGSCHVQVVDS------YGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTND-NAMISPL  422 (436)
Q Consensus       350 Hwh~~A~ei~yV~~G~grv~vv~~------~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~-~p~~~~L  422 (436)
                      ||||+|+||.||++|+++|+|+++      +|+++++++|++|||||||+|++|++.+.. +++|++|++++ +|+.++|
T Consensus       255 H~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vvP~G~~h~~~n~~-~l~~l~f~~~s~~~~~~~l  333 (397)
T 2phl_A          255 HYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATS-NVNFTGFGINANNNNRNLL  333 (397)
T ss_dssp             EEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESS-SEEEEEEEESCTTCCEEES
T ss_pred             eEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEECCCCeEEEEeCC-CeEEEEEECCCCCCcceec
Confidence            999999999999999999999999      788999999999999999999999996664 89999999988 7899999


Q ss_pred             cc-ccccccccC
Q 046186          423 SG-RTSVMRGKG  433 (436)
Q Consensus       423 aG-~~sv~~~lp  433 (436)
                      || ++|+|++||
T Consensus       334 aG~~~sv~~~~p  345 (397)
T 2phl_A          334 AGKTDNVISSIG  345 (397)
T ss_dssp             SSSSSBHHHHHH
T ss_pred             ccchhhHHhhCC
Confidence            99 899999988

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=100.00  E-value=7.7e-39  Score=323.17  Aligned_cols=306  Identities=14%  Similarity=0.208  Sum_probs=242.1

Q ss_pred             cccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCC
Q 046186           35 NLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYP  112 (436)
Q Consensus        35 ~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~  112 (436)
                      ++....|   +.+++|.++.++. .+|.+.  ++++.+++|.||++..||||+ +.|++||++|    ++.+++++++  
T Consensus        24 ~~~~~~~---~~~~~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G----~~~~~v~~~~--   92 (361)
T 2vqa_A           24 AFSKTPL---VLYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEG----RTRITLTSPE--   92 (361)
T ss_dssp             CGGGSCC---EEETTEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEES----EEEEEEECTT--
T ss_pred             EcccCCc---eecCCceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEe----EEEEEEEeCC--
Confidence            5555555   3569999999875 345432  689999999999999999999 9999999999    9999998763  


Q ss_pred             CcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCC
Q 046186          113 ETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGN  192 (436)
Q Consensus       113 et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~  192 (436)
                                           .+++++.|++||+++||+|++||+.|.++++++++++++..+..++     ..|.+   
T Consensus        93 ---------------------g~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~~~~~~-----~~~~~---  143 (361)
T 2vqa_A           93 ---------------------GKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEG-----ATFSV---  143 (361)
T ss_dssp             ---------------------SCEEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESSTTCCTT-----SSEEH---
T ss_pred             ---------------------CcEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCcccc-----ceecH---
Confidence                                 1235789999999999999999999999999999999987766532     34443   


Q ss_pred             ChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccc
Q 046186          193 PHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEED  272 (436)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~  272 (436)
                                          .+||++||.++|+++|+++.+.+++|...+.   .|+.. .    ..|+...        
T Consensus       144 --------------------~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~---~i~~~-~----~~p~~~~--------  187 (361)
T 2vqa_A          144 --------------------TDWLSHTPIAWVEENLGWTAAQVAQLPKKQV---YISSY-G----PASGPLA--------  187 (361)
T ss_dssp             --------------------HHHHHTSCHHHHHHHHTCCHHHHTTSCSSCC---CEECS-S----CCCCCGG--------
T ss_pred             --------------------hHHHHhCCHHHHHHHhCcCHHHHHhccccCc---eEEeC-C----CCCCccc--------
Confidence                                5899999999999999999999999987653   46531 1    1222111        


Q ss_pred             hhhhhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceeccccc
Q 046186          273 SSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWN  352 (436)
Q Consensus       273 ~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh  352 (436)
                       .+..  .   ...+...+.+|.     +..  ..++.+.+.+|+++.+++.++|.++  ++++.++.|.||++..||||
T Consensus       188 -~~~~--~---~~~~~~~~~~~~-----~~~--~~~~~~~~~gg~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~~H~H  252 (361)
T 2vqa_A          188 -SATP--Q---GQTAKIEVPHTH-----NLL--GQQPLVSLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQLHWH  252 (361)
T ss_dssp             -GCCC--S---SCCCBCCSCCEE-----ECT--TSCCSEEETTEEEEEECTTTCTTST--TCEEEEEEECTTCEEEEEEC
T ss_pred             -cccc--c---CcCCCCCcceEe-----ccc--cCCCcccCCCceEEEEehhhCcCcc--cceEEEEEECCCcccccccC
Confidence             0000  0   011333444442     222  2334567899999999999999998  78899999999999999999


Q ss_pred             CCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCCCccccccccccccc
Q 046186          353 LNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNAMISPLSGRTSVMRG  431 (436)
Q Consensus       353 ~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~  431 (436)
                      +++.|+.||++|++++++++++|+ ....+|++||+++||+|.+|.. |.++++++++++++.+++....+|   +++++
T Consensus       253 ~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~---~~~~~  328 (361)
T 2vqa_A          253 PNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLS---TWLAS  328 (361)
T ss_dssp             SSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCCEEHH---HHHHT
T ss_pred             CCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcceeeHH---HHhhh
Confidence            999999999999999999998876 3556799999999999999987 778899999999999888777776   58888


Q ss_pred             cCCC
Q 046186          432 KGRR  435 (436)
Q Consensus       432 lp~e  435 (436)
                      ||.|
T Consensus       329 ~~~~  332 (361)
T 2vqa_A          329 NPSS  332 (361)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            8753

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=100.00  E-value=1.9e-31  Score=271.74  Aligned_cols=287  Identities=15%  Similarity=0.230  Sum_probs=218.9

Q ss_pred             cccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCC
Q 046186           35 NLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPE  113 (436)
Q Consensus        35 ~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e  113 (436)
                      ++...+|   ...++|.++.++. ..|.+.  ++++.+++|.||+...||||++.|++||++|    ++.+.++..+.  
T Consensus        51 ~~~~~~~---~~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G----~~~~~~~~~~g--  119 (385)
T 1j58_A           51 SFSDTHN---RLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEAEWAYMIYG----SARVTIVDEKG--  119 (385)
T ss_dssp             CGGGSCC---EEETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSCEEEEEEEE----EEEEEEECTTS--
T ss_pred             EcccCCc---cccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCChheEEEEEee----eEEEEEEeCCC--
Confidence            4444555   3458999988774 456654  7899999999999999999999999999999    99999886421  


Q ss_pred             cccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCC
Q 046186          114 TYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNP  193 (436)
Q Consensus       114 t~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~  193 (436)
                                           ...++.|++||+++||+|++|++.|.+ ++++++.+|+.....     ....|.+    
T Consensus       120 ---------------------~~~~~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~~~~-----~~~~~~~----  168 (385)
T 1j58_A          120 ---------------------RSFIDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFS-----ENSTFQL----  168 (385)
T ss_dssp             ---------------------CEEEEEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCTTCC-----GGGEEEH----
T ss_pred             ---------------------cEEEEEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCCCcc-----ccchhhh----
Confidence                                 112569999999999999999999987 458888888866543     2234554    


Q ss_pred             hhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccch
Q 046186          194 HQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDS  273 (436)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~  273 (436)
                                         .+||.++|.++|+++|+++.+.+++|...+.   .|+...      .|....         
T Consensus       169 -------------------~~~~~~~p~evla~~~~vs~~~~~~l~~~~~---~i~~~~------~p~~l~---------  211 (385)
T 1j58_A          169 -------------------TDWLAHTPKEVIAANFGVTKEEISNLPGKEK---YIFENQ------LPGSLK---------  211 (385)
T ss_dssp             -------------------HHHHHTSCHHHHHHHHTCCTGGGTTSCSSCC---SEECCC------CCCCHH---------
T ss_pred             -------------------hhhhhcccHHHHHHHhCCCHHHHHhcccccc---eEeccC------CCCccc---------
Confidence                               4899999999999999999999999877543   455321      121110         


Q ss_pred             hhhhhcccccCCCCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccC
Q 046186          274 SEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNL  353 (436)
Q Consensus       274 ~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~  353 (436)
                      .+..  .    ...|...    ..+.++..+  .++ +...+|.++.+++.+++..+  ++++..+.|.||++..+|||+
T Consensus       212 ~~~~--~----~~~~~~~----~~~v~~~~~--~~~-~~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h~H~  276 (385)
T 1j58_A          212 DDIV--E----GPNGEVP----YPFTYRLLE--QEP-IESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHP  276 (385)
T ss_dssp             HHCC--C----CTTCCCS----SCSEEEGGG--SCC-EECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECS
T ss_pred             cccc--c----CCCCCCC----CCeeeeccc--CCC-eeCCCceEEEeecccCCccc--ceEEEEEEECCCcccCceeCC
Confidence            0000  0    0011111    112234432  223 45678999999999999876  799999999999999999999


Q ss_pred             CCcEEEEEEeeeEEEEEEeCCCC-eEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCC
Q 046186          354 NAHSIMYAISGSCHVQVVDSYGR-SVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNA  417 (436)
Q Consensus       354 ~A~ei~yV~~G~grv~vv~~~G~-~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p  417 (436)
                      .+.|+.||++|++++++.+++|+ ..+  +|++||+++||++.+|.. |.+++++++++++..+..
T Consensus       277 ~~~E~~~Vl~G~~~~~i~~~~g~~~~~--~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~~~~  340 (385)
T 1j58_A          277 NTHEWQYYISGKARMTVFASDGHARTF--NYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHY  340 (385)
T ss_dssp             SSCEEEEEEESEEEEEEEEETTEEEEE--EEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSC
T ss_pred             CCCEEEEEEeCeEEEEEEcCCCcEEEE--EEcCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCc
Confidence            98999999999999999988875 444  599999999999999987 788899999999987654

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.98  E-value=1.1e-31  Score=247.32  Aligned_cols=167  Identities=16%  Similarity=0.237  Sum_probs=146.0

Q ss_pred             cccccCCCceeecCCcEEEE---eCCCCccccc-cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCC
Q 046186           35 NLEALEPNNRVECEAGVVET---WDPGHEQFQC-AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPG  110 (436)
Q Consensus        35 ~l~a~eP~~~~~se~G~~e~---~~~~~p~l~~-~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg  110 (436)
                      ++...+|  ++++++|.+++   |+.+.+.|.+ .++++++++|+||++.+||+++++|++||++|    +++++++.++
T Consensus         7 ~~~~~~~--~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G----~~~v~v~~~~   80 (178)
T 1dgw_A            7 RSNKFLT--LFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEG----QAILVLVNPD   80 (178)
T ss_dssp             CGGGEEE--EEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEES----EEEEEEEETT
T ss_pred             chhhccc--ceEcCCCEEEEEcccCCcchhcCCcCcEEEEEEEecCCcEecCcCCCCCEEEEEEeE----EEEEEEEeCC
Confidence            4455444  58999999999   7777788888 58999999999999999995559999999999    9999999775


Q ss_pred             CCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCC-cEEEEEEEecCCCCCcCCCCCceeee
Q 046186          111 YPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGST-PVVAVVLLDVANNDNQLDRNPRKFHL  189 (436)
Q Consensus       111 ~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e-~l~~v~~~d~~n~~nqld~~~~~f~l  189 (436)
                      |                        ++++.|++||+++||+|++||++|.|++ ++++++++++++    .++.++.|||
T Consensus        81 ~------------------------~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~----~~g~~~~~~l  132 (178)
T 1dgw_A           81 G------------------------RDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFR----RPGTVEDFFL  132 (178)
T ss_dssp             E------------------------EEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCS----STTCCCEEES
T ss_pred             C------------------------cEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCC----CCCceEEeec
Confidence            3                        4578999999999999999999999986 899999888664    4567899999


Q ss_pred             cCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEc
Q 046186          190 AGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVR  252 (436)
Q Consensus       190 aG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~  252 (436)
                      +|++.+                 .+||++||++|||+||+++++++++|+.+++++|.||+++
T Consensus       133 ~g~~~~-----------------~~~~~~~p~~vla~af~v~~~~~~~l~~~~~~~~~iv~~~  178 (178)
T 1dgw_A          133 SSTKRL-----------------PSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP  178 (178)
T ss_dssp             SCCSSC-----------------CCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECC
T ss_pred             cCCcCc-----------------chhhhhCCHHHHHHHHCcCHHHHHHHhcCcCcCceEEEcC
Confidence            999654                 7999999999999999999999999997777799999974

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.96  E-value=6.4e-29  Score=256.62  Aligned_cols=182  Identities=18%  Similarity=0.259  Sum_probs=141.2

Q ss_pred             cccccCCCceeecCCcEEEEeCC-CC-ccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCC
Q 046186           35 NLEALEPNNRVECEAGVVETWDP-GH-EQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGY  111 (436)
Q Consensus        35 ~l~a~eP~~~~~se~G~~e~~~~-~~-p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~  111 (436)
                      +|...+|.  +.+.+|.+..++. ++ |.|+|+|+++++++|.||||++||||+ |++|+||++|    +|++++|+|+|
T Consensus       231 nl~~~~p~--~~n~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G----~g~v~vv~~~~  304 (418)
T 3s7i_A          231 NLREGEPD--LSNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKG----TGNLELVAVRK  304 (418)
T ss_dssp             ETTCSCCS--EEETTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEEC----CEEEEEEEEEE
T ss_pred             ccccCCCc--eeCCCCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeC----eEEEEEEeCCC
Confidence            66677774  7789999888875 78 999999999999999999999999997 9999999999    99999999999


Q ss_pred             CCcccCCC-CCCCCccCCcccccccce-eeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeee
Q 046186          112 PETYQSPQ-QGGFGESAGRSQQDSHQK-IRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHL  189 (436)
Q Consensus       112 ~et~~~~~-~~~~~~~~~~~~~d~~~k-~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~l  189 (436)
                      +..-++.. ++++++++.++..|.+++ +.+|++||||+||+|++||++|++  ++++++ |++++.      +++.++|
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~-f~~~~~------~~~~~~L  375 (418)
T 3s7i_A          305 EQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLG-FGINAE------NNHRIFL  375 (418)
T ss_dssp             C-------------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEE-EEESCT------TCCEEES
T ss_pred             ccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEE-EEcCCC------CCcceEc
Confidence            74111100 001111111223455666 699999999999999999999864  488877 555442      3469999


Q ss_pred             cCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEE
Q 046186          190 AGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV  251 (436)
Q Consensus       190 aG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~  251 (436)
                      ||+.                   +|||++||++|||+||+++.+++++|+.++++. .|+.+
T Consensus       376 AG~~-------------------~sv~~~~~~evla~af~v~~~~v~~L~~~q~e~-~~~~~  417 (418)
T 3s7i_A          376 AGDK-------------------DNVIDQIEKQAKDLAFPGSGEQVEKLIKNQKES-HFVSA  417 (418)
T ss_dssp             SSST-------------------TBHHHHSCHHHHHHHSSSCHHHHHHHHHTCCSC-SEEEC
T ss_pred             cCch-------------------hhhhhcCCHHHHHHHhCCCHHHHHHHHhcCCcc-eeecC
Confidence            9972                   389999999999999999999999999988764 66643

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.93  E-value=7.5e-26  Score=235.75  Aligned_cols=165  Identities=16%  Similarity=0.260  Sum_probs=142.2

Q ss_pred             CCCccc-cccccCCC--ceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEPN--NRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      ..|.++ +.|..+|.  .++.+.+|.+...+ .++|.|+.++|++++++|.||||++||||+ |+||+||++|    +++
T Consensus       281 ~~c~~r~~~Ni~~p~~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G----~~r  356 (466)
T 3kgl_A          281 TICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDG----EAH  356 (466)
T ss_dssp             CCSSCCCEEETTCGGGEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEES----EEE
T ss_pred             cccceeccccccCcccCCcccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEec----eEE
Confidence            458876 66666654  36888999987777 578999999999999999999999999998 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCcccccccce--eeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQK--IRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLD  181 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k--~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld  181 (436)
                      +++|++..                        ++  ..+|++||||+||+|++|++ |.|++++++|++++..|+     
T Consensus       357 v~~V~~~g------------------------~~~f~~~l~~GDV~v~P~G~~H~~-~ag~e~~~~l~~f~s~np-----  406 (466)
T 3kgl_A          357 VQVVNDNG------------------------DRVFDGQVSQGQLLSIPQGFSVVK-RATSEQFRWIEFKTNANA-----  406 (466)
T ss_dssp             EEEECTTS------------------------CEEEEEEEETTCEEEECTTCEEEE-EECSSEEEEEEEESSSSC-----
T ss_pred             EEEEeCCC------------------------cEEEEeEecCCcEEEECCCCeEEE-EcCCCCEEEEEEECCCCC-----
Confidence            99998731                        22  36799999999999999998 788999999999887654     


Q ss_pred             CCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEE
Q 046186          182 RNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV  251 (436)
Q Consensus       182 ~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~  251 (436)
                         ...+|||.                    ++||+++|++|||+||+++.+++++|+.++++ .+|+..
T Consensus       407 ---~~~~LaG~--------------------~s~~~~lP~eVla~aF~v~~~~v~~Lk~~q~e-~~i~~~  452 (466)
T 3kgl_A          407 ---QINTLAGR--------------------TSVLRGLPLEVISNGYQISLEEARRVKFNTIE-TTLTHS  452 (466)
T ss_dssp             ---CEEESSST--------------------TCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCC-SSEEEC
T ss_pred             ---ccccccch--------------------hhhhhhCCHHHHHHHhCcCHHHHHHHHhccCc-cEEECC
Confidence               36789987                    69999999999999999999999999988764 477754

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.93  E-value=2.4e-25  Score=233.43  Aligned_cols=165  Identities=16%  Similarity=0.244  Sum_probs=140.0

Q ss_pred             CCCccc-cccccCCC--ceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEPN--NRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      +.|.++ +.+...|.  .++.+.+|.+...+ .++|.|+..||++++++|.||||++||||+ |+||+||++|    +++
T Consensus       316 ~~c~~~l~~Ni~~p~~~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G----~~r  391 (496)
T 3ksc_A          316 TVCTAKLRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKG----RAR  391 (496)
T ss_dssp             CCSSSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEES----EEE
T ss_pred             cccchhhhccccccccCCcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEec----eEE
Confidence            569886 55555554  46888899987777 478999999999999999999999999998 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCccccccccee--eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI--RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLD  181 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~--~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld  181 (436)
                      +++|++..                        +++  .+|++||||+||+|++|+..|. ++++.++++++..++     
T Consensus       392 v~~V~~~g------------------------~~~f~~~l~~GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s~np-----  441 (496)
T 3ksc_A          392 LQVVNCNG------------------------NTVFDGELEAGRALTVPQNYAVAAKSL-SDRFSYVAFKTNDRA-----  441 (496)
T ss_dssp             EEEECTTS------------------------CEEEEEEEETTCEEEECTTCEEEEEEC-SSEEEEEEEESSTTC-----
T ss_pred             EEEEeCCC------------------------cEEEEEEecCCeEEEECCCCEEEEEeC-CCCEEEEEEECCCCC-----
Confidence            99998731                        233  5799999999999999998775 788999998876553     


Q ss_pred             CCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEE
Q 046186          182 RNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV  251 (436)
Q Consensus       182 ~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~  251 (436)
                         ...+|||.                    ++||+++|++|||+||+++.+++++|+..+++ .+|+..
T Consensus       442 ---~~~~LaG~--------------------~sv~~~~p~eVLa~aF~v~~~~v~~Lk~~q~e-~~i~~~  487 (496)
T 3ksc_A          442 ---GIARLAGT--------------------SSVINNLPLDVVAATFNLQRNEARQLKSNNPF-KFLVPA  487 (496)
T ss_dssp             ---CEEESSST--------------------TCTTTTSCHHHHHHHHTCCHHHHHHHHHSCCC-SSEECC
T ss_pred             ---ccccccch--------------------hhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCc-cEEeCC
Confidence               36789987                    69999999999999999999999999988764 577743

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.92  E-value=9.7e-25  Score=225.69  Aligned_cols=173  Identities=18%  Similarity=0.203  Sum_probs=137.0

Q ss_pred             CCCccccccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEe
Q 046186           29 NDCQINNLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGD  106 (436)
Q Consensus        29 ~~C~~~~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~  106 (436)
                      ..|.++ |....|  .+.+.+|.+..++. ++|.|+++++++++++|.||||++||||+ |+||+||++|    +|++++
T Consensus       213 ~~~~~~-l~~~~p--~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G----~~~v~~  285 (416)
T 1uij_A          213 EDEPFN-LRSRNP--IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEG----DANIEL  285 (416)
T ss_dssp             SSSCEE-TTSSCC--SEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEES----EEEEEE
T ss_pred             ccccee-ccccCC--CccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEee----EEEEEE
Confidence            457764 556666  47899999888875 78999999999999999999999999999 9999999999    999999


Q ss_pred             eCCCCCCcccCCCCCCCCccCCcccccccc--ee--eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCC
Q 046186          107 PFPGYPETYQSPQQGGFGESAGRSQQDSHQ--KI--RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDR  182 (436)
Q Consensus       107 v~pg~~et~~~~~~~~~~~~~~~~~~d~~~--k~--~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~  182 (436)
                      |.+++..       +++      +..+.++  ++  .+|++|||++||+|++||++|.  +++.++++++.+.       
T Consensus       286 v~~~g~~-------~~~------~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~~-------  343 (416)
T 1uij_A          286 VGIKEQQ-------QKQ------KQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINAE-------  343 (416)
T ss_dssp             EEEC-------------------------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETCT-------
T ss_pred             EcCCCcc-------ccc------cccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCCC-------
Confidence            9885421       000      0001122  24  4999999999999999999998  5799998877431       


Q ss_pred             CCceeeecC-CChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEE
Q 046186          183 NPRKFHLAG-NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV  251 (436)
Q Consensus       183 ~~~~f~laG-~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~  251 (436)
                      +....+||| .                    ++||+++|++||++||+++.+++++|+.++.+. +|+..
T Consensus       344 ~~~~~~laG~~--------------------~sv~~~~p~~vla~af~~~~~~v~~l~~~~~~~-~~~~~  392 (416)
T 1uij_A          344 NNQRNFLAGEK--------------------DNVVRQIERQVQELAFPGSAQDVERLLKKQRES-YFVDA  392 (416)
T ss_dssp             TCCEEESSSST--------------------TBSGGGSCHHHHHHHSSSCHHHHHHHTTSCCSC-SEEEC
T ss_pred             CCcceecccch--------------------hhHHHhCCHHHHHHHHCcCHHHHHHHHhcCCcc-EEECC
Confidence            234789998 4                    599999999999999999999999999877643 56643

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.92  E-value=2e-24  Score=225.00  Aligned_cols=163  Identities=12%  Similarity=0.188  Sum_probs=136.8

Q ss_pred             CCCccc-cccccCC--CceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEP--NNRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP--~~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      ..|.++ +.+..+|  ..++...+|.+...+ .++|.|+..|+++++++|.||||++||||+ |+||+||++|    +++
T Consensus       281 ~~c~~~l~~ni~~p~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G----~~~  356 (465)
T 3qac_A          281 TICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRG----RGR  356 (465)
T ss_dssp             CTTTSCCEEETTCTTTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEE----EEE
T ss_pred             cccceeccccccccccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeC----CEE
Confidence            458775 4444433  346777899987777 478999999999999999999999999999 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCccccccccee--eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI--RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLD  181 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~--~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld  181 (436)
                      +++|++..                        +++  .+|++||||+||+|++|+.. .|+++++++++++..|+     
T Consensus       357 v~vV~~~g------------------------~~~f~~~l~~GDVfvvP~g~~h~~~-ag~e~~~~l~f~~s~np-----  406 (465)
T 3qac_A          357 IQIVNDQG------------------------QSVFDEELSRGQLVVVPQNFAIVKQ-AFEDGFEWVSFKTSENA-----  406 (465)
T ss_dssp             EEEECTTS------------------------CEEEEEEEETTCEEEECTTCEEEEE-EEEEEEEEEEEESSTTC-----
T ss_pred             EEEEeCCC------------------------cEEEEEEecCCeEEEECCCcEEEEE-cCCCCeEEEEEecCCCC-----
Confidence            99998731                        222  57999999999999999986 57889999998876554     


Q ss_pred             CCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEE
Q 046186          182 RNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV  249 (436)
Q Consensus       182 ~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv  249 (436)
                         ...+|||.                    ++||+.+|++||++||+++.+++++|+.++++ ..|+
T Consensus       407 ---~~~~LaG~--------------------~sv~~~ip~eVla~aF~v~~e~v~~Lk~~~~e-~~i~  450 (465)
T 3qac_A          407 ---MFQSLAGR--------------------TSAIRSLPIDVVSNIYQISREEAFGLKFNRPE-TTLF  450 (465)
T ss_dssp             ---CEEESSSS--------------------SBHHHHSCHHHHHHHHTCCHHHHHHHHHSCCS-CSEE
T ss_pred             ---cccccccc--------------------hhhhhhCCHHHHHHHhCCCHHHHHHHHhccCc-cEEE
Confidence               46789998                    69999999999999999999999999988764 3565

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.91  E-value=2.5e-24  Score=224.70  Aligned_cols=164  Identities=11%  Similarity=0.154  Sum_probs=137.0

Q ss_pred             CCCccc-cccccCCC--ceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEPN--NRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      ..|.++ +.+..+|.  ..+...+|.+...+ .++|.|+.+++++++++|.||||..||||+ |+||+||++|    +++
T Consensus       280 ~~~~~~l~~n~~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G----~~~  355 (459)
T 2e9q_A          280 TICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRG----NAR  355 (459)
T ss_dssp             CGGGSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEE----EEE
T ss_pred             cccceeeeecccccccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEee----EEE
Confidence            457654 33333332  35788999887776 478999999999999999999999999999 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCccccccccee--eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI--RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLD  181 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~--~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld  181 (436)
                      +++|.+..                        +++  .+|++||||+||+|++||+.| +++++.++++++..++     
T Consensus       356 v~vv~~~g------------------------~~~~~~~l~~GDv~v~P~G~~H~~~n-g~~~~~~l~~~~s~~~-----  405 (459)
T 2e9q_A          356 VQVVDNFG------------------------QSVFDGEVREGQVLMIPQNFVVIKRA-SDRGFEWIAFKTNDNA-----  405 (459)
T ss_dssp             EEEECTTS------------------------CEEEEEEEETTCEEEECTTCEEEEEE-EEEEEEEEEEESSSSC-----
T ss_pred             EEEEeCCC------------------------CEEEeeEEeCCcEEEECCCCEEEEEe-CCCCeEEEEEecCCCC-----
Confidence            99997631                        234  469999999999999999999 7889999999886543     


Q ss_pred             CCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEE
Q 046186          182 RNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVT  250 (436)
Q Consensus       182 ~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~  250 (436)
                         ...+|||.                    ++||+.+|++|||+||+++.+++++|+..+.+. +|+.
T Consensus       406 ---~~~~laG~--------------------~s~~~~~p~~Vla~af~v~~~~v~~l~~~~~e~-~i~~  450 (459)
T 2e9q_A          406 ---ITNLLAGR--------------------VSQMRMLPLGVLSNMYRISREEAQRLKYGQQEM-RVLS  450 (459)
T ss_dssp             ---CEEESSSS--------------------SSHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSC-SEEC
T ss_pred             ---cceeecch--------------------hHHHHhCCHHHHHHHHCcCHHHHHHHHhcCCcc-EEeC
Confidence               47899997                    699999999999999999999999999876543 5653

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.90  E-value=9.4e-24  Score=221.56  Aligned_cols=166  Identities=14%  Similarity=0.235  Sum_probs=135.2

Q ss_pred             CCCccc-cccccCCC--ceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEPN--NRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      +.|.++ +.+...|.  ..+...+|.+...+ .++|.|+.++|++++++|.||||++||||+ |+||+||++|    +++
T Consensus       352 t~c~~rl~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G----~~r  427 (531)
T 3fz3_A          352 TFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRG----NAR  427 (531)
T ss_dssp             TGGGCCCEEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEE----EEE
T ss_pred             ccccceeeeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeC----cEE
Confidence            468776 55555554  46778899987777 478999999999999999999999999999 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRN  183 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~  183 (436)
                      +++|++...                      .-...+|++||||+||+|++|+.. .+++.+.+++ |+++.       +
T Consensus       428 v~~V~~~G~----------------------~v~~~~L~~GDV~v~P~G~~H~~~-ag~e~l~fla-F~ss~-------n  476 (531)
T 3fz3_A          428 VQVVNENGD----------------------AILDQEVQQGQLFIVPQNHGVIQQ-AGNQGFEYFA-FKTEE-------N  476 (531)
T ss_dssp             EEEECTTSC----------------------EEEEEEEETTCEEEECTTCEEEEE-EEEEEEEEEE-EESST-------T
T ss_pred             EEEEeCCCc----------------------EEEEEEecCCeEEEECCCCeEEEe-cCCCCEEEEE-EecCC-------C
Confidence            999976310                      012579999999999999999876 4577888875 55432       1


Q ss_pred             CceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEE
Q 046186          184 PRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVT  250 (436)
Q Consensus       184 ~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~  250 (436)
                      +...+|||.                    .+||+.+|++|||+||+++.+++++|+.++.+ ..|+.
T Consensus       477 p~~~~LaG~--------------------~svf~~lP~eVLa~aF~v~~e~v~kLk~~~~e-s~i~~  522 (531)
T 3fz3_A          477 AFINTLAGR--------------------TSFLRALPDEVLANAYQISREQARQLKYNRQE-TIALS  522 (531)
T ss_dssp             CCEEESSST--------------------TCHHHHSCHHHHHHHHTCCHHHHHHHHHSCCC-SSEEC
T ss_pred             Ccceeccch--------------------hHHHHhCCHHHHHHHhCcCHHHHHHHHhcCCC-ceEEC
Confidence            246689988                    69999999999999999999999999988764 46663

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.90  E-value=2.1e-23  Score=217.19  Aligned_cols=172  Identities=15%  Similarity=0.160  Sum_probs=133.0

Q ss_pred             CCccccccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEee
Q 046186           30 DCQINNLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDP  107 (436)
Q Consensus        30 ~C~~~~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v  107 (436)
                      .|.+ +|....|.  +.+.+|.+..++. ++|.|+++|+++++++|.||||++||||+ |+||+||++|    ++++++|
T Consensus       246 ~~~~-~l~~~~p~--~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G----~~~v~vv  318 (445)
T 2cav_A          246 DKPF-NLRSRDPI--YSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEG----RAEVELV  318 (445)
T ss_dssp             CCCE-ETTSSCCS--EESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEES----CEEEEEE
T ss_pred             ccce-eccccCCC--ccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEee----EEEEEEE
Confidence            4654 45566664  7899999887775 78999999999999999999999999999 9999999999    9999999


Q ss_pred             CCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCcee
Q 046186          108 FPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKF  187 (436)
Q Consensus       108 ~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f  187 (436)
                      .+.+..      ++   ++++.+   ......+|++|||++||+|++||+.|.  +++.++++.. ++..      ....
T Consensus       319 ~~~~~~------~~---~~~g~~---~~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~~-~~~~------~~~~  377 (445)
T 2cav_A          319 GLEQQQ------QQ---GLESMQ---LRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGV-NAEN------NERN  377 (445)
T ss_dssp             EC--------------------C---CEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEE-SCTT------CCEE
T ss_pred             eCCCcc------cc---cccCcc---eEEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEEc-cCCC------CCcE
Confidence            885421      00   000110   001257899999999999999999998  4688887553 3221      2478


Q ss_pred             eecC-CChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEE
Q 046186          188 HLAG-NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVT  250 (436)
Q Consensus       188 ~laG-~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~  250 (436)
                      +||| .                    ++||+++|++||++||+++.+++++|+..+.+. .|+.
T Consensus       378 ~laG~~--------------------~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~-~~~~  420 (445)
T 2cav_A          378 FLAGHK--------------------ENVIRQIPRQVSDLTFPGSGEEVEELLENQKES-YFVD  420 (445)
T ss_dssp             ESSSST--------------------TBSGGGSCHHHHHHHSSSCHHHHHHHHHHCCSC-SEEE
T ss_pred             Ecccch--------------------hhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCcc-EEeC
Confidence            9998 5                    699999999999999999999999999877543 5654

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.90  E-value=2.1e-23  Score=216.73  Aligned_cols=174  Identities=19%  Similarity=0.226  Sum_probs=137.0

Q ss_pred             CCCccccccccCCCceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEe
Q 046186           29 NDCQINNLEALEPNNRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGD  106 (436)
Q Consensus        29 ~~C~~~~l~a~eP~~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~  106 (436)
                      ..|.+ +|....|.  +.+++|.+..++. ++|.|+++++++++++|.||||++||||+ |+||+||++|    +|++++
T Consensus       230 ~~~~~-~l~~~~p~--~~~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G----~~~v~v  302 (434)
T 2ea7_A          230 QDEPF-NLRNSKPI--YSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEG----EAKIEL  302 (434)
T ss_dssp             SSSCE-ETTSSCCS--EEETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEES----CEEEEE
T ss_pred             cccce-eeccCCCc--eeCCCcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEee----EEEEEE
Confidence            45766 45566664  7789999877774 78999999999999999999999999999 9999999999    999999


Q ss_pred             eCCCCCCcccCCCCCCCCccCCccccccccee--eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCC
Q 046186          107 PFPGYPETYQSPQQGGFGESAGRSQQDSHQKI--RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNP  184 (436)
Q Consensus       107 v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~--~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~  184 (436)
                      |.+++..   ..++      +++   +..-++  .+|++|||++||+|++||+.|.  +++.++++++.+.       +.
T Consensus       303 v~~~g~~---~~~~------~~~---~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f~~~~~-------~~  361 (434)
T 2ea7_A          303 VGLSDQQ---QQKQ------QEE---SLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAE-------NN  361 (434)
T ss_dssp             EEEEECC---CCTT------SCC---CEEEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEETCT-------TC
T ss_pred             EecCccc---cccc------ccc---CcceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEECCCC-------CC
Confidence            9875321   0000      010   111123  4999999999999999999998  5799888776332       12


Q ss_pred             ceeeecC-CChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEE
Q 046186          185 RKFHLAG-NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV  251 (436)
Q Consensus       185 ~~f~laG-~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~  251 (436)
                      ...+||| .                    ++||+++|++||++||+++.+++++|+..+.+. +|+..
T Consensus       362 ~~~~laG~~--------------------~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~-~~~~~  408 (434)
T 2ea7_A          362 RRNFLAGGK--------------------DNVMSEIPTEVLEVSFPASGKKVEKLIKKQSES-HFVDA  408 (434)
T ss_dssp             CEEESSSST--------------------TBGGGGSCHHHHHHHSSSCHHHHHHHHTTCCSC-SEEEC
T ss_pred             Cceecccch--------------------hhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCcc-EEECC
Confidence            4789998 4                    699999999999999999999999999877543 67654

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.89  E-value=2.2e-22  Score=211.02  Aligned_cols=163  Identities=13%  Similarity=0.244  Sum_probs=135.3

Q ss_pred             CCCccc-cccccCCC--ceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEPN--NRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      ..|.++ +.+..+|.  ..+...+|.+...+ .++|.|+..++++++++|.||++..||||+ ++||+||++|    +++
T Consensus       296 ~~~~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G----~~~  371 (476)
T 1fxz_A          296 TICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNG----RAL  371 (476)
T ss_dssp             -CTTCCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEES----EEE
T ss_pred             cccceeeeccccccccCCcccCCCeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeC----EEE
Confidence            348764 33444443  46889999987777 578999999999999999999999999999 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCccccccccee--eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI--RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLD  181 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~--~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld  181 (436)
                      ++++.+..                        .++  ..|++||+++||+|++|++.| ++++++++++++..++     
T Consensus       372 v~v~~~~G------------------------~~~~~~~l~~GDv~viP~G~~H~~~n-g~~~l~~l~f~~s~~p-----  421 (476)
T 1fxz_A          372 IQVVNCNG------------------------ERVFDGELQEGRVLIVPQNFVVAARS-QSDNFEYVSFKTNDTP-----  421 (476)
T ss_dssp             EEEECTTS------------------------CEEEEEEEETTCEEEECTTCEEEEEE-CSTTEEEEEEESSSSC-----
T ss_pred             EEEEecCC------------------------CEEeeeEEcCCCEEEECCCCeEEEEe-CCCCEEEEEEECCCCC-----
Confidence            99986531                        233  469999999999999999999 8889999987755443     


Q ss_pred             CCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEE
Q 046186          182 RNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV  249 (436)
Q Consensus       182 ~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv  249 (436)
                         ...+|||.                    ++||+.+|++||+++|+++.+++++|+..+.+ -+|+
T Consensus       422 ---~~~~laG~--------------------~s~~~~~p~~Vla~af~~~~~~v~~l~~~~~e-~~i~  465 (476)
T 1fxz_A          422 ---MIGTLAGA--------------------NSLLNALPEEVIQHTFNLKSQQARQIKNNNPF-KFLV  465 (476)
T ss_dssp             ---CEEESSST--------------------TCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCC-SSEE
T ss_pred             ---ceeEccch--------------------hHHHHhCCHHHHHHHhCcCHHHHHHHHhhCCC-cEEe
Confidence               46789987                    69999999999999999999999999987653 3554

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.89  E-value=1.7e-22  Score=212.76  Aligned_cols=163  Identities=15%  Similarity=0.258  Sum_probs=135.6

Q ss_pred             CCCccc-cccccCCC--ceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEPN--NRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      ..|.+. +.+..+|.  ..+...+|.+...+ .++|.|+..++++++++|.||++..||||+ ++||+||++|    +++
T Consensus       330 ~~c~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G----~~~  405 (510)
T 3c3v_A          330 TICTATVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRG----RAH  405 (510)
T ss_dssp             TGGGCCCEEECSSCSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEES----EEE
T ss_pred             cccceeeeeccCccccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeC----EEE
Confidence            348765 33444343  46788999987777 578999999999999999999999999999 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCccccccccee--eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI--RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLD  181 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~--~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld  181 (436)
                      ++++.+..                        .++  ..|++|||++||+|++|++.| ++++++++++++..++     
T Consensus       406 v~vv~~~G------------------------~~~~~~~l~~GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~~p-----  455 (510)
T 3c3v_A          406 VQVVDSNG------------------------NRVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVAFKTDSRP-----  455 (510)
T ss_dssp             EEEECTTS------------------------CEEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEEEESSSSC-----
T ss_pred             EEEEeCCC------------------------CEEEeEEEcCCcEEEECCCCeEEEEe-CCCCEEEEEEECCCCc-----
Confidence            99987631                        233  469999999999999999999 8888999887754433     


Q ss_pred             CCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEE
Q 046186          182 RNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV  249 (436)
Q Consensus       182 ~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv  249 (436)
                         ...+|||.                    ++||+.+|++||++||+++.+++++|+..+.+ .+|+
T Consensus       456 ---~~~~LaG~--------------------~svf~~lp~eVla~aF~v~~e~v~~L~~~~~e-~~i~  499 (510)
T 3c3v_A          456 ---SIANLAGE--------------------NSVIDNLPEEVVANSYGLPREQARQLKNNNPF-KFFV  499 (510)
T ss_dssp             ---CEEESSST--------------------TSTTTTSCHHHHHHHHTCCHHHHHHHHHSCCC-SSEE
T ss_pred             ---ceeecccH--------------------hHHHHhCCHHHHHHHHCcCHHHHHHHHhhCCC-cEEE
Confidence               46889987                    69999999999999999999999999987653 3555

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.88  E-value=3.2e-22  Score=205.37  Aligned_cols=154  Identities=16%  Similarity=0.162  Sum_probs=125.1

Q ss_pred             ceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCC
Q 046186           43 NRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG  121 (436)
Q Consensus        43 ~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~  121 (436)
                      ..+.+++|.+..++...     .++++++++|.||||.+||||+ |+||+||++|    +|++++|.+.|+..       
T Consensus       220 p~~~n~~G~~~~v~~~~-----l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G----~g~v~vv~~~~~~~-------  283 (397)
T 2phl_A          220 NTIGNEFGNLTERTDNS-----LNVLISSIEMEEGALFVPHYYSKAIVILVVNEG----EAHVELVGPKGNKE-------  283 (397)
T ss_dssp             CEEEETTEEEEEEEETT-----TTEEEEEEEECTTEEEEEEEESSCEEEEEEEES----EEEEEEEEECC--C-------
T ss_pred             CcccCCCCeEEEEeecc-----CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEee----eEEEEEEecccccc-------
Confidence            35789999988887654     8999999999999999999999 9999999999    99999998754320       


Q ss_pred             CCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecC-CChhhhhHh
Q 046186          122 GFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAG-NPHQEFQQQ  200 (436)
Q Consensus       122 ~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG-~~~~~~~~~  200 (436)
                      +    .+     ......+|++||||+||+|++||+.|.+  ++.++++.+.+.       +....+||| .        
T Consensus       284 ~----~g-----~~~~~~~l~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s~-------~~~~~~laG~~--------  337 (397)
T 2phl_A          284 T----LE-----YESYRAELSKDDVFVIPAAYPVAIKATS--NVNFTGFGINAN-------NNNRNLLAGKT--------  337 (397)
T ss_dssp             C----SC-----EEEEEEEEETTCEEEECTTCCEEEEESS--SEEEEEEEESCT-------TCCEEESSSSS--------
T ss_pred             C----CC-----ceEEEEEecCCCEEEECCCCeEEEEeCC--CeEEEEEECCCC-------CCcceecccch--------
Confidence            0    00     0123589999999999999999999985  799888666331       124789998 4        


Q ss_pred             hhhhhcccccccccccccCC-----HHHHhhhcCCCHHHHHHHhhcCCCceeEEEE
Q 046186          201 RQQERFGGHQQCNNVFCGFD-----TRILAEAFNVDERLVRRLRSEKDYRGAIVTV  251 (436)
Q Consensus       201 ~~~~~~~~~~~~~nv~~gf~-----~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~  251 (436)
                                  ++||+++|     ++||++||+++.+++++|+.++.+. +|+..
T Consensus       338 ------------~sv~~~~p~~~~~~eVla~af~v~~~~v~~l~~~~~e~-~i~~~  380 (397)
T 2phl_A          338 ------------DNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGS-YFVDA  380 (397)
T ss_dssp             ------------SBHHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTCCCC-SEEEC
T ss_pred             ------------hhHHhhCCCccchHHHHHHHhCcCHHHHHHHHhcCCcc-EEeCC
Confidence                        59999999     9999999999999999999877543 56643

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.87  E-value=8e-23  Score=164.61  Aligned_cols=77  Identities=22%  Similarity=0.322  Sum_probs=69.9

Q ss_pred             ccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCe
Q 046186          299 RENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS  377 (436)
Q Consensus       299 ~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~  377 (436)
                      .+||.+  +.++|+|.+|+++++++.+||+|++||||+++++|++|||++|||||+|+||+||++|+++++|||++|++
T Consensus         3 pfnl~~--~~p~~~n~~G~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g~~   79 (79)
T 1dgw_X            3 PFNLRS--RDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQ   79 (79)
T ss_dssp             CEETTS--SCCSEECSSEEEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC---
T ss_pred             cccccc--CCCCccCCCCcEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCCCC
Confidence            468874  55568999999999999999999999999999999999999999999999999999999999999999863

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.87  E-value=2e-21  Score=196.93  Aligned_cols=237  Identities=16%  Similarity=0.143  Sum_probs=156.8

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ..+.+...+|.||+...+|+|+..|++||++|    +|.+..|.                           .+...|++|
T Consensus        98 ~~l~~~~~~l~PG~~~~~H~H~~~e~~yVl~G----~g~~t~v~---------------------------g~~~~l~~G  146 (354)
T 2d40_A           98 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEG----KGAFTAVD---------------------------GERTPMNEG  146 (354)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEEC----SSCEEEET---------------------------TEEEECCTT
T ss_pred             CcEEEEEEEECCCCCcCCeecCcceEEEEEEE----EEEEEEEC---------------------------CEEEEEcCC
Confidence            36789999999999999999999999999999    88875542                           246899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHH
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRIL  224 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vL  224 (436)
                      |+|+||+|+.|++.|.++++++++++.|..-..+ |+                               ..++..++.++.
T Consensus       147 D~~~iP~g~~H~~~n~~~~~~~~l~v~d~p~~~~-l~-------------------------------~~~~~~~~~~~~  194 (354)
T 2d40_A          147 DFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNI-LG-------------------------------CGFAEDYPEEQQ  194 (354)
T ss_dssp             CEEEECTTSCEEEECCSSSCEEEEEEECHHHHHH-HT-------------------------------CCCEEECC--CC
T ss_pred             CEEEECCCCcEEeEeCCCCCEEEEEEECchhHhh-cC-------------------------------ceeeecCccccC
Confidence            9999999999999999999999988776421110 11                               112223333332


Q ss_pred             hhhcCCCHHHHHHHhhcCCCceeEEEEcCceec-cCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecc----
Q 046186          225 AEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQV-ARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLR----  299 (436)
Q Consensus       225 a~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~----  299 (436)
                      ..  ..+.....++..     +.++.+... +. .+|                                ...+++.    
T Consensus       195 ~~--~~p~~~~~~~~~-----~~~~p~~~~-~~~~sp--------------------------------~~~y~~~~~~~  234 (354)
T 2d40_A          195 PV--TRKEGDYLPRYA-----ANMLPLRHQ-TGNSSP--------------------------------IFNYRYDRSRE  234 (354)
T ss_dssp             CC--CSCTTTHHHHHS-----SSEECSSCC-CCSSCS--------------------------------CCEECHHHHHH
T ss_pred             cC--cCCcchhhhhhc-----cCCCCcccc-ccCCCc--------------------------------ceeccHHHHHH
Confidence            21  111111122221     112221110 00 000                                0001110    


Q ss_pred             --cccCCCCCCCcccCCCeEEEEeCC-CCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC
Q 046186          300 --ENIGDPSKADIYTQGAGHITTLNS-FNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR  376 (436)
Q Consensus       300 --~Ni~~~~~~d~~~~~~G~~~~~~~-~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~  376 (436)
                        ..+.+...++.  ..|+.+..+++ ..++++.  .|++..+.|.||++..||||+++ +|.||++|+|+++|   +| 
T Consensus       235 ~l~~~~~~~~~~~--~~G~~~~~~np~t~~~~~~--ti~~~~~~l~pG~~~~~H~h~~~-ev~~v~~G~g~~~v---~~-  305 (354)
T 2d40_A          235 VLHDLTRLGDADE--WDGYKMRYVNPVTGGYPMP--SMGAFLQLLPKGFASRVARTTDS-TIYHVVEGSGQVII---GN-  305 (354)
T ss_dssp             HHHHHHTTSCCBT--TTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCBEESSC-EEEEEEEEEEEEEE---TT-
T ss_pred             HHHhhhhccccCC--CCCeEEEEeCCCcCCCCCC--cceeEEEEECCCCCCCceecCCc-EEEEEEeCeEEEEE---CC-
Confidence              00100012222  24678888885 4788888  57777889999999999999999 99999999999999   33 


Q ss_pred             eEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCC
Q 046186          377 SVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAM  418 (436)
Q Consensus       377 ~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~  418 (436)
                      .+++  +++||+|+||.+.+|.+.+. +++.+++|  ++.|.
T Consensus       306 ~~~~--~~~GD~~~vP~~~~H~~~n~-e~~~l~~~--~d~p~  342 (354)
T 2d40_A          306 ETFS--FSAKDIFVVPTWHGVSFQTT-QDSVLFSF--SDRPV  342 (354)
T ss_dssp             EEEE--EETTCEEEECTTCCEEEEEE-EEEEEEEE--ESHHH
T ss_pred             EEEE--EcCCCEEEECCCCeEEEEeC-CCEEEEEE--cCHHH
Confidence            4354  99999999999999988443 77888888  44444

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.85  E-value=1.9e-21  Score=178.90  Aligned_cols=124  Identities=15%  Similarity=0.246  Sum_probs=108.0

Q ss_pred             CCCcccCCCeEEEEeCC-----CCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEE
Q 046186          307 KADIYTQGAGHITTLNS-----FNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDG  381 (436)
Q Consensus       307 ~~d~~~~~~G~~~~~~~-----~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~  381 (436)
                      ..+.+.+.+|+++.+++     ..||+|+  +|++.++.|.||+++.|| |++|+||.||++|++++++++++|..++  
T Consensus        11 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~~~~~~~--   85 (178)
T 1dgw_A           11 FLTLFKNQHGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTY--   85 (178)
T ss_dssp             EEEEEEETTEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEE--
T ss_pred             cccceEcCCCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeCCCcEEE--
Confidence            44567889999999998     6799998  799999999999999999 9999999999999999999998876544  


Q ss_pred             EecCccEEEEcCCCEEEE-EeCCC-cEEEEEEEe-cCCCC---ccccccc---cccccccCCC
Q 046186          382 EVRRGQIMVVPQNFAVVK-RAGGA-EFEWISFKT-NDNAM---ISPLSGR---TSVMRGKGRR  435 (436)
Q Consensus       382 ~l~~Gdv~vVP~g~~h~~-~ag~e-~~~~l~f~~-s~~p~---~~~LaG~---~sv~~~lp~e  435 (436)
                      +|++||+++||+|.+|++ |.+++ .++++++.. +.+|+   ..+|+|.   +++|+++|.|
T Consensus        86 ~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~~~p~~  148 (178)
T 1dgw_A           86 KLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKN  148 (178)
T ss_dssp             EEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHH
T ss_pred             EECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhhhCCHH
Confidence            599999999999999998 77775 899999754 44665   4589998   7999999854

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.82  E-value=1.3e-19  Score=169.38  Aligned_cols=139  Identities=22%  Similarity=0.285  Sum_probs=115.6

Q ss_pred             CCcEE-EEeCCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCc
Q 046186           48 EAGVV-ETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGE  125 (436)
Q Consensus        48 e~G~~-e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~  125 (436)
                      .++.+ .++...+|.+.+.++++.++++.||++..||||+ +.|++||++|    ++.++++.++ +             
T Consensus        52 ~G~~v~~~~~~~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G----~~~v~~~~~~-~-------------  113 (201)
T 1fi2_A           52 NGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKG----ELLVGILGSL-D-------------  113 (201)
T ss_dssp             TSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEES----EEEEEEECCG-G-------------
T ss_pred             CCcEEEEEecccCCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeC----EEEEEEEcCC-C-------------
Confidence            35544 4455678999999999999999999999999999 7899999999    9999987541 0             


Q ss_pred             cCCcccccccce--eeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhh
Q 046186          126 SAGRSQQDSHQK--IRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQ  203 (436)
Q Consensus       126 ~~~~~~~d~~~k--~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~  203 (436)
                              ...+  ...|++||+++||+|++||+.|.|+++++++++++..++.        ...++             
T Consensus       114 --------~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~p~--------~~~~~-------------  164 (201)
T 1fi2_A          114 --------SGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPG--------IVFVP-------------  164 (201)
T ss_dssp             --------GTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCC--------CEEHH-------------
T ss_pred             --------CCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCCC--------eEehh-------------
Confidence                    0022  6899999999999999999999999999999988766543        23333             


Q ss_pred             hhccccccccccccc---CCHHHHhhhcCCCHHHHHHHhhcC
Q 046186          204 ERFGGHQQCNNVFCG---FDTRILAEAFNVDERLVRRLRSEK  242 (436)
Q Consensus       204 ~~~~~~~~~~nv~~g---f~~~vLa~af~v~~~~v~~l~~~~  242 (436)
                               .++|+.   +++++|+++|+++.+++++|+++.
T Consensus       165 ---------~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~  197 (201)
T 1fi2_A          165 ---------LTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF  197 (201)
T ss_dssp             ---------HHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHS
T ss_pred             ---------hHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhh
Confidence                     468875   999999999999999999999765

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.82  E-value=7.1e-20  Score=171.23  Aligned_cols=122  Identities=20%  Similarity=0.264  Sum_probs=108.5

Q ss_pred             CCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCC--CCeEEEEEecC
Q 046186          308 ADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSY--GRSVYDGEVRR  385 (436)
Q Consensus       308 ~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~--G~~~~~~~l~~  385 (436)
                      ++..+..|+.++.++..++|.|+.+++++.++.|.||++..||||+++.|+.||++|++++++++++  |.+++...|++
T Consensus        46 ~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~  125 (201)
T 1fi2_A           46 GNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRA  125 (201)
T ss_dssp             CCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEET
T ss_pred             CCccCCCCcEEEEEecccCCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECC
Confidence            3344556788999999999999999999999999999999999999999999999999999999865  35556778999


Q ss_pred             ccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCCCccccccccccccc
Q 046186          386 GQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNAMISPLSGRTSVMRG  431 (436)
Q Consensus       386 Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~  431 (436)
                      ||+++||+|.+|++ |.+++++.++.++++++|....++  .++|.+
T Consensus       126 GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~p~~~~~~--~~~~~~  170 (201)
T 1fi2_A          126 GETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVP--LTLFGS  170 (201)
T ss_dssp             TCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCCEEHH--HHHHHC
T ss_pred             CCEEEECCCCeEEEEeCCCCCEEEEEEECCCCCCeEehh--hHHhcC
Confidence            99999999999998 788899999999999999887776  567776

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.79  E-value=5.2e-18  Score=168.34  Aligned_cols=248  Identities=10%  Similarity=0.032  Sum_probs=148.2

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ...+.+..+++.||+...+|||+ ..|++||++|    ++.+.+                            ..+.+.|+
T Consensus        43 ~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G----~~~~~~----------------------------~~~~~~l~   90 (337)
T 1y3t_A           43 GDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDG----KLELTL----------------------------DGERYLLI   90 (337)
T ss_dssp             TSSEEEEEEEECTTCEEEEEECTTCCEEEEEEES----CEEEEE----------------------------TTEEEEEC
T ss_pred             CCeEEEEEEEeCCCCCCCceeCCCceEEEEEEEC----EEEEEE----------------------------CCEEEEEC
Confidence            34689999999999999999999 9999999999    998874                            12468999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccC-CH
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGF-DT  221 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf-~~  221 (436)
                      +||++++|+|++|.+.|.++ +++++.+++...        +..||....                    ..+.+.. +.
T Consensus        91 ~Gd~~~~p~~~~H~~~n~~~-~~~~~~~~~p~~--------~~~~~~~~~--------------------~~~~~~~~p~  141 (337)
T 1y3t_A           91 SGDYANIPAGTPHSYRMQSH-RTRLVSYTMKGN--------VAHLYSVIG--------------------NPYDHAEHPP  141 (337)
T ss_dssp             TTCEEEECTTCCEEEEECST-TEEEEEEEETTS--------STHHHHHHS--------------------EECSCSSCCS
T ss_pred             CCCEEEECCCCcEEEEECCC-CeEEEEEECCCC--------HHHHHHHhC--------------------cccccccCCC
Confidence            99999999999999999987 588888776442        334553211                    0111111 10


Q ss_pred             HHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccc
Q 046186          222 RILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLREN  301 (436)
Q Consensus       222 ~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~N  301 (436)
                      ....   ..+.+.+.++....   |..+ +..    ..+....               .  .|..+.+.+..-.+    .
T Consensus       142 ~~~~---~~~~~~l~~~a~~~---gv~~-~~~----~~~~~~~---------------~--~~~~~~l~~~~~~~----v  189 (337)
T 1y3t_A          142 YASE---EVSNERFAEAAAVA---TIVF-LDE----AKPACSA---------------K--LAELTELPDGAVPY----V  189 (337)
T ss_dssp             SCCC---CCTTCTTGGGTSSC---EECC-CCC----CCSSCSC---------------E--ECCBCSCCSSSCCE----E
T ss_pred             CCCc---ccCHHHHHHhHhhc---cEEE-cCC----CCccccc---------------c--chhhhcCCCCCCCE----E
Confidence            0000   01111111111111   1111 110    0010000               0  00001111110000    1


Q ss_pred             cCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecC-CceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEE
Q 046186          302 IGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHR-NAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYD  380 (436)
Q Consensus       302 i~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~-gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~  380 (436)
                      +. ....+.+...+..++.+.+..   .....+ +..+.+.| |+...+|||+.+.|+.||++|++++.+   +| ..  
T Consensus       190 ~r-~~~~~~~~~~g~~~~~l~~~~---~~~~~~-~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i---~~-~~--  258 (337)
T 1y3t_A          190 LE-SGEGDRLLTGDQLHRIVAAQK---NTDGQF-IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DG-QE--  258 (337)
T ss_dssp             EC-TTCSEEEEETTEEEEEEECGG---GTTTSC-EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TT-EE--
T ss_pred             EC-CCCcCEEEECCcEEEEEeccc---ccCCcE-EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE---CC-EE--
Confidence            11 122223433455566655421   122233 34455656 678889999989999999999999988   23 33  


Q ss_pred             EEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCC
Q 046186          381 GEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDN  416 (436)
Q Consensus       381 ~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~  416 (436)
                      ..|++||+++||.+.+|.. |.++ .+.++.+++...
T Consensus       259 ~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~  294 (337)
T 1y3t_A          259 IQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGL  294 (337)
T ss_dssp             EEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESST
T ss_pred             EEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCcc
Confidence            4599999999999999988 6666 899999876553

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.70  E-value=1.1e-16  Score=160.98  Aligned_cols=139  Identities=14%  Similarity=0.201  Sum_probs=114.7

Q ss_pred             eecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCC
Q 046186           45 VECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGG  122 (436)
Q Consensus        45 ~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~  122 (436)
                      ...++|.++.... +.|.++  ++.+.++++.||+...||||+ +.|++||++|    ++.+.++.++.           
T Consensus       213 ~~~~gg~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G----~~~~~v~~~~g-----------  275 (361)
T 2vqa_A          213 VSLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQLHWHPNADEWQYVLDG----EMDLTVFASEG-----------  275 (361)
T ss_dssp             EEETTEEEEEECTTTCTTST--TCEEEEEEECTTCEEEEEECSSCCEEEEEEES----CEEEEEECSTT-----------
T ss_pred             ccCCCceEEEEehhhCcCcc--cceEEEEEECCCcccccccCCCCCEEEEEEeC----EEEEEEEcCCC-----------
Confidence            4567888777653 456554  578999999999999999999 5999999999    99999886531           


Q ss_pred             CCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhh
Q 046186          123 FGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQ  202 (436)
Q Consensus       123 ~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~  202 (436)
                                  ....+.|++||+++||+|++|++.|.++++++++++++..++        ..+.+|            
T Consensus       276 ------------~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~--------~~~~~~------------  323 (361)
T 2vqa_A          276 ------------KASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDY--------QSIDLS------------  323 (361)
T ss_dssp             ------------CEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSC--------CCEEHH------------
T ss_pred             ------------cEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCc--------ceeeHH------------
Confidence                        012689999999999999999999999999999998865442        344553            


Q ss_pred             hhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCC
Q 046186          203 QERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKD  243 (436)
Q Consensus       203 ~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~  243 (436)
                                 +||+++|++||++||+++.+++++|+.+.+
T Consensus       324 -----------~~~~~~~~~vl~~~f~~~~~~~~~l~~~~~  353 (361)
T 2vqa_A          324 -----------TWLASNPSSVLGNTFQISPELTKKLPVQDT  353 (361)
T ss_dssp             -----------HHHHTSCHHHHHHHHTCCHHHHTTSCCSCC
T ss_pred             -----------HHhhhCCHHHHHHHHCcCHHHHHhhhccCC
Confidence                       689999999999999999999999986654

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.69  E-value=1.5e-15  Score=146.99  Aligned_cols=198  Identities=13%  Similarity=0.056  Sum_probs=135.6

Q ss_pred             ccceEEEEEEecCCceecCeee-c-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFS-N-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h-~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      ...+.+..++|.||+-..+|+| . +.|++||++|    ++.+.+                            ..+.+.|
T Consensus        56 ~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G----~l~~~~----------------------------~~~~~~L  103 (261)
T 1rc6_A           56 GASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISG----NITAKA----------------------------EGKTFAL  103 (261)
T ss_dssp             TCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEES----EEEEEE----------------------------TTEEEEE
T ss_pred             CCcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEe----EEEEEE----------------------------CCEEEEE
Confidence            3567889999999998776654 4 6899999999    888875                            1347899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCH
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDT  221 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~  221 (436)
                      ++||.+++|++.+|.+.|.++++++++++.....+.                                       .|..+
T Consensus       104 ~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v~~~~~~~---------------------------------------~g~~p  144 (261)
T 1rc6_A          104 SEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPV---------------------------------------EGYAP  144 (261)
T ss_dssp             ETTEEEEECTTCCCEEEECSSSCEEEEEEEEECCCC---------------------------------------TTCCC
T ss_pred             CCCCEEEECCCCCEEEEeCCCCCEEEEEEEeccccC---------------------------------------CCCCC
Confidence            999999999999999999999999988876432211                                       01100


Q ss_pred             HHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccc
Q 046186          222 RILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLREN  301 (436)
Q Consensus       222 ~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~N  301 (436)
                                           .  -.|+..+ ++   .+....                    ...+.            
T Consensus       145 ---------------------~--~~v~~~~-~~---~~~~~~--------------------~~~~~------------  165 (261)
T 1rc6_A          145 ---------------------W--LVSGNAS-EL---ERIHYE--------------------GMDDV------------  165 (261)
T ss_dssp             ---------------------C--CEEEEGG-GS---CCC---------------------------C------------
T ss_pred             ---------------------c--eEEcCHH-HC---CcccCC--------------------CCcce------------
Confidence                                 0  0222211 11   110000                    00010            


Q ss_pred             cCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEE
Q 046186          302 IGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDG  381 (436)
Q Consensus       302 i~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~  381 (436)
                                     .++.+.+.+.    ..+|.+..+.|.||+...+|||+...|+.||++|++.+.+=   ++.   .
T Consensus       166 ---------------~~~~l~~~~~----~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~---~~~---~  220 (261)
T 1rc6_A          166 ---------------ILLDFLPKEL----GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLD---NNW---I  220 (261)
T ss_dssp             ---------------EEEECSCCST----TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESS---SCE---E
T ss_pred             ---------------EEEEecCccc----CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEEC---CEE---E
Confidence                           1111111111    22678889999999999999999889999999999999862   332   3


Q ss_pred             EecCccEEEEcCCCEEEE-EeCC-CcEEEEEEEecCC
Q 046186          382 EVRRGQIMVVPQNFAVVK-RAGG-AEFEWISFKTNDN  416 (436)
Q Consensus       382 ~l~~Gdv~vVP~g~~h~~-~ag~-e~~~~l~f~~s~~  416 (436)
                      .|++||+++||++.+|.. |.++ +.++++.++...+
T Consensus       221 ~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~d~~r  257 (261)
T 1rc6_A          221 PVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNR  257 (261)
T ss_dssp             EEETTCEEEECSSEEEEEEEC----CEEEEEEEECSC
T ss_pred             EeCCCCEEEECCCCcEEeEeCCCCcCEEEEEEecCCC
Confidence            599999999999999987 7788 8999998875433

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.68  E-value=1e-15  Score=156.83  Aligned_cols=238  Identities=14%  Similarity=0.067  Sum_probs=144.6

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ...+.+...+|.||....+|.|...++.||++|    +|....+.                           .+...+++
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG----~G~~t~v~---------------------------G~~~~~~~  168 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAASALRFIMEG----SGAYTIVD---------------------------GHKVELGA  168 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESSCEEEEEEEC----SCEEEEET---------------------------TEEEEECT
T ss_pred             CCeeEEEEEEECCCCCcCCccCCcceEEEEEEe----eEEEEEEC---------------------------CEEEEEcC
Confidence            346888999999999999999998899999999    99765442                           34689999


Q ss_pred             CcEEEeCCCCeEEEec-cCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHH
Q 046186          144 GDIFALPAGVAHWCYN-EGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTR  222 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N-~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~  222 (436)
                      ||++++|+|..|.+.| .|++++++++++|..--.. +|-.|-..+-...                    ..+  .-+  
T Consensus       169 GD~i~~P~g~~H~~~N~~gde~l~~l~v~d~Pl~~~-l~~~f~e~~~~~~--------------------~~~--~~~--  223 (394)
T 3bu7_A          169 NDFVLTPNGTWHEHGILESGTECIWQDGLDIPLTNC-LEANFYEVHPNDY--------------------QTT--DIP--  223 (394)
T ss_dssp             TCEEEECTTCCEEEEECTTCCCEEEEEEECHHHHHH-TTCCCEEECTTSS--------------------CCC--CCC--
T ss_pred             CCEEEECcCCCEEEEcCCCCCCEEEEEcccchhhhh-cCccccccCcccc--------------------cCc--cCC--
Confidence            9999999999999999 9999999999888543211 2222111110000                    000  000  


Q ss_pred             HHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceec-cCCCC-cccccccccchhhhhhcccccCCCCCCcccceeeeccc
Q 046186          223 ILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQV-ARPPR-TQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRE  300 (436)
Q Consensus       223 vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~-~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~  300 (436)
                               .....+..+    .|.+..+....+. -+|.. ..   +     ++                      .+.
T Consensus       224 ---------~~~~~~~~~----~~~l~p~~~~~~~~~sP~~~y~---w-----~~----------------------~~~  260 (394)
T 3bu7_A          224 ---------LNDSPLTYG----GPALLPQLDKWDKPYSPLLKYS---W-----EP----------------------TYE  260 (394)
T ss_dssp             ---------TTHHHHHHC----STTEEESSCCCCCSSCSCCEEC---H-----HH----------------------HHH
T ss_pred             ---------ccchhhhhc----CcccccccccccCCCCCcEEec---H-----HH----------------------HHH
Confidence                     000000000    0111111100000 01100 00   0     00                      000


Q ss_pred             ccC---CCCCCCcccCCCeE-EEEeCCCCC-CccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCC
Q 046186          301 NIG---DPSKADIYTQGAGH-ITTLNSFNL-PVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG  375 (436)
Q Consensus       301 Ni~---~~~~~d~~~~~~G~-~~~~~~~~~-P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G  375 (436)
                      .|.   +-..+   ....|+ +.-+++.+= ....  .|++....|.||+...||.|+.. ++.||++|+|.+.|   +|
T Consensus       261 ~L~~~~~~~~~---~~~~~~~l~l~nP~~g~~~~~--tl~~~~~~l~PG~~~~~HrH~~~-~v~~VleG~G~~~V---~g  331 (394)
T 3bu7_A          261 ALLNYAKASDG---SPYDGLILRYTNPQTGGHPML--TMGASMQMLRPGEHTKAHRHTGN-VIYNVAKGQGYSIV---GG  331 (394)
T ss_dssp             HHHHHHTTCCC---BTTTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCEEESSC-EEEEEEECCEEEEE---TT
T ss_pred             HHHHhhhccCc---CcCCceEEEEeCCCCCCCCCC--eeeEEEEEECCCCcCCCcccCCc-EEEEEEeCeEEEEE---CC
Confidence            000   00000   011122 222232211 1233  68899999999999999999855 79999999997766   34


Q ss_pred             CeEEEEEecCccEEEEcCCCEEEE-EeC-CCcEEEEEEE
Q 046186          376 RSVYDGEVRRGQIMVVPQNFAVVK-RAG-GAEFEWISFK  412 (436)
Q Consensus       376 ~~~~~~~l~~Gdv~vVP~g~~h~~-~ag-~e~~~~l~f~  412 (436)
                      .+ +  ++++||+|+||.+..|.+ |.| ++++.+++|.
T Consensus       332 e~-~--~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i~  367 (394)
T 3bu7_A          332 KR-F--DWSEHDIFCVPAWTWHEHCNTQERDDACLFSFN  367 (394)
T ss_dssp             EE-E--EECTTCEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             EE-E--EEeCCCEEEECCCCeEEeEeCCCCCCeEEEEee
Confidence            33 4  499999999999999987 888 6899999985

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.65  E-value=3.3e-14  Score=138.69  Aligned_cols=194  Identities=13%  Similarity=0.116  Sum_probs=135.7

Q ss_pred             ccceEEEEEEecCCceecCeee-c-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFS-N-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h-~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      ...+.+..++|.||+-..+|+| . ..|++||++|    +..+.+                            ..+.+.|
T Consensus        59 ~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G----~l~~~~----------------------------~~~~~~L  106 (274)
T 1sef_A           59 GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDG----RLRVSD----------------------------GQETHEL  106 (274)
T ss_dssp             TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEES----EEEEEC----------------------------SSCEEEE
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEe----EEEEEE----------------------------CCEEEEE
Confidence            4568889999999997766554 4 6899999999    888874                            1246899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCH
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDT  221 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~  221 (436)
                      ++||.+++|++.+|.+.|.++++++++++.....+.                                   .++      
T Consensus       107 ~~GD~~~~~~~~~H~~~N~~~~~~~~l~v~~~y~~~-----------------------------------~g~------  145 (274)
T 1sef_A          107 EAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPL-----------------------------------AGH------  145 (274)
T ss_dssp             ETTEEEEECTTSCCEEEESSSSCEEEEEEEEECCCC-----------------------------------TTC------
T ss_pred             CCCCEEEECCCCCEEEEeCCCCCEEEEEEEeeeeeC-----------------------------------CCC------
Confidence            999999999999999999999999988876422211                                   000      


Q ss_pred             HHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccc
Q 046186          222 RILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLREN  301 (436)
Q Consensus       222 ~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~N  301 (436)
                                          .. .-.|++.+ ++   .+...             .       ...|             
T Consensus       146 --------------------~p-~~~v~~~~-d~---~~~~~-------------~-------~~~g-------------  167 (274)
T 1sef_A          146 --------------------QP-YKVVGSIH-DQ---QPEEY-------------E-------GMTD-------------  167 (274)
T ss_dssp             --------------------CC-CCEEEEGG-GS---CCEEG-------------G-------GCTT-------------
T ss_pred             --------------------CC-cceeCChH-HC---Ccccc-------------C-------CCCC-------------
Confidence                                00 11233322 11   00000             0       0011             


Q ss_pred             cCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecc-cccCCCcEEEEEEeeeEEEEEEeCCCCeEEE
Q 046186          302 IGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVP-HWNLNAHSIMYAISGSCHVQVVDSYGRSVYD  380 (436)
Q Consensus       302 i~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~P-Hwh~~A~ei~yV~~G~grv~vv~~~G~~~~~  380 (436)
                                    ..++.+.+....    .++.+..+.|.||+.... |||+ ..|+.||++|++.+.+=    ..  .
T Consensus       168 --------------~~~~~l~~~~~~----~~~~~~~~~l~pg~~~~~~H~H~-~~E~~yVl~G~~~~~i~----~~--~  222 (274)
T 1sef_A          168 --------------VLLWSLLPKEFD----FDMNMHILSFEPGASHAYIETHV-QEHGAYLISGQGMYNLD----NE--W  222 (274)
T ss_dssp             --------------EEEEECSCSSTT----CSEEEEEEEECTTCBCSSCBCCS-CCEEEEEEECEEEEEET----TE--E
T ss_pred             --------------eEEEEeCCcccC----CCEEEEEEEECCCCccCcceecc-CeEEEEEEeCEEEEEEC----CE--E
Confidence                          122222221111    167888999999999998 9995 57999999999999872    22  2


Q ss_pred             EEecCccEEEEcCCCEEEE-EeCC-CcEEEEEEEe
Q 046186          381 GEVRRGQIMVVPQNFAVVK-RAGG-AEFEWISFKT  413 (436)
Q Consensus       381 ~~l~~Gdv~vVP~g~~h~~-~ag~-e~~~~l~f~~  413 (436)
                      ..|++||+++||.+.+|.. |.++ +.+.++.++.
T Consensus       223 ~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~~  257 (274)
T 1sef_A          223 YPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKD  257 (274)
T ss_dssp             EEEETTCEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             EEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEEc
Confidence            4599999999999999987 7788 8999999864

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.65  E-value=1.4e-14  Score=138.86  Aligned_cols=186  Identities=12%  Similarity=0.063  Sum_probs=130.9

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      +..+...++.||+...+|||+..+++||++|    ++.+.+  .                          .+...|++||
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G----~~~~~~--~--------------------------~~~~~l~~Gd   80 (243)
T 3h7j_A           33 DTEVLMSYVPPHTNVEPHQHKEVQIGMVVSG----ELMMTV--G--------------------------DVTRKMTALE   80 (243)
T ss_dssp             TEEEEEEEECTTEEEEEECCSSEEEEEEEES----EEEEEE--T--------------------------TEEEEEETTT
T ss_pred             CCEEEEEEECCCCccCCEECCCcEEEEEEEe----EEEEEE--C--------------------------CEEEEECCCC
Confidence            3466777899999999999999999999999    888875  1                          2468999999


Q ss_pred             EEE-eCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHH
Q 046186          146 IFA-LPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRIL  224 (436)
Q Consensus       146 v~~-iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vL  224 (436)
                      .++ +|+|++|.+.|.++++++++.+.+.....+             .+                 .+..+         
T Consensus        81 ~i~~ip~~~~H~~~n~~~~~~~~l~i~r~~~~e~-------------~~-----------------~p~g~---------  121 (243)
T 3h7j_A           81 SAYIAPPHVPHGARNDTDQEVIAIDIKRLKADET-------------YT-----------------SPEDY---------  121 (243)
T ss_dssp             CEEEECTTCCEEEEECSSSCEEEEEEEECCTTCC-------------CC-----------------CCTTS---------
T ss_pred             EEEEcCCCCcEeeEeCCCCcEEEEEEeccCcccc-------------CC-----------------Cchhh---------
Confidence            885 999999999999999988876644322110             00                 00011         


Q ss_pred             hhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccCC
Q 046186          225 AEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGD  304 (436)
Q Consensus       225 a~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~  304 (436)
                                             .+.   .+   ....                 +     ..+             +  
T Consensus       122 -----------------------~~~---~L---~~~~-----------------~-----~~~-------------~--  135 (243)
T 3h7j_A          122 -----------------------FLD---IF---KTRD-----------------L-----LPG-------------M--  135 (243)
T ss_dssp             -----------------------EEC---CE---ECSC-----------------S-----BTT-------------B--
T ss_pred             -----------------------hhh---hc---cCcc-----------------c-----ccC-------------c--
Confidence                                   000   00   0000                 0     000             0  


Q ss_pred             CCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecC-CceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEe
Q 046186          305 PSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHR-NAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEV  383 (436)
Q Consensus       305 ~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~-gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l  383 (436)
                        ..+.+                  ..-.+.+..+.|.| |+...+|||+. .|+.||++|++.+++=+   .   ...|
T Consensus       136 --~~~~~------------------~~~~~~~~~~~~~p~g~~~~~H~H~~-~e~~~Vl~G~~~~~i~~---~---~~~l  188 (243)
T 3h7j_A          136 --EVTFF------------------VEDWVEIMLAKIPGNGGEMPFHKHRN-EQIGICIGGGYDMTVEG---C---TVEM  188 (243)
T ss_dssp             --CEEEE------------------EETTEEEEEEEECTTTEEEEEECCSS-EEEEEECSSCEEEEETT---E---EEEE
T ss_pred             --ceeee------------------ccceeEEEEEEECCCCCcCCCEeCCC-cEEEEEEECEEEEEECC---E---EEEE
Confidence              00000                  00135566788999 99999999986 69999999999988532   2   2349


Q ss_pred             cCccEEEEcCCCEEEE-EeCCCcEEEEEEEecC
Q 046186          384 RRGQIMVVPQNFAVVK-RAGGAEFEWISFKTND  415 (436)
Q Consensus       384 ~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~  415 (436)
                      ++||.++||.+-+|.. |.+++.+.++.+++..
T Consensus       189 ~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~  221 (243)
T 3h7j_A          189 KFGTAYFCEPREDHGAINRSEKESKSINIFFPP  221 (243)
T ss_dssp             CTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred             CCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence            9999999999999987 7788999999988743

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.65  E-value=4.5e-15  Score=149.97  Aligned_cols=267  Identities=11%  Similarity=0.071  Sum_probs=145.6

Q ss_pred             ceEEEEEEecCCceec---Ceeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           66 GVAVVRHTIRQKGLLL---PQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~---Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      .+.+. .++.|++...   +|||+ ..|++||++|    ++.+.+-..+                       ..++.+.|
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G----~~~~~v~~~~-----------------------g~~~~~~L   98 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKG----SFQLWAQSGN-----------------------ETQQTRVL   98 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEES----EEEEEEEETT-----------------------SCCEEEEE
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEE----EEEEEECCcC-----------------------CceEEEEE
Confidence            46666 5667776544   89999 9999999999    8888753210                       11357899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeec-CCChhhhhHhhhhhhcccccccccccccCC
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLA-GNPHQEFQQQRQQERFGGHQQCNNVFCGFD  220 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~la-G~~~~~~~~~~~~~~~~~~~~~~nv~~gf~  220 (436)
                      ++||+++||+|++|++.|.+++. ++++++...        .+..||.. |.+.                  .+..   .
T Consensus        99 ~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~--------~~~~~f~~l~~~~------------------~~~~---~  148 (350)
T 1juh_A           99 SSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPG--------GFEDLFYYLGTNA------------------TDTT---H  148 (350)
T ss_dssp             ETTCEEEECTTEEEEEEECSTTE-EEEEEEESS--------CTTHHHHHHSEEC------------------CCTT---C
T ss_pred             CCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCc--------cHHHHHHHhcccc------------------cccc---c
Confidence            99999999999999999998875 777766532        23456543 2110                  0111   1


Q ss_pred             HHHHhhhcCCCH--HHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhh--hcccccCCCCCCcccceee
Q 046186          221 TRILAEAFNVDE--RLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYE--RSRGRYGGDNGVEETMCTM  296 (436)
Q Consensus       221 ~~vLa~af~v~~--~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~ng~ee~~~~~  296 (436)
                      ...+..+|+...  ...+++......-|.++..+..     |..+-         -...  ....|...           
T Consensus       149 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----p~~~~---------~~~~a~~~~~w~~~-----------  203 (350)
T 1juh_A          149 TPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFT-----PRTDT---------VNGTAPANTVWHTG-----------  203 (350)
T ss_dssp             CSSCCC--------------CGGGGGGTCEECTTCC-----CCCCC---------BTTEESSSSCSSSS-----------
T ss_pred             cccCCcccccCccccCHHHHHHHHHHcCCEeccccC-----ChhHh---------hccccccCCccccC-----------
Confidence            223334444433  3444544322223454433211     11100         0000  00001000           


Q ss_pred             ecccc-cCCCCCCCcccCCCeEEE---------EeCCCCCCccccccceEEEEEecCC--ceecccccCCCcEEEEEEee
Q 046186          297 KLREN-IGDPSKADIYTQGAGHIT---------TLNSFNLPVLRWIQLSAERGLLHRN--AMMVPHWNLNAHSIMYAISG  364 (436)
Q Consensus       297 ~~~~N-i~~~~~~d~~~~~~G~~~---------~~~~~~~P~L~~l~ls~~~v~L~~g--am~~PHwh~~A~ei~yV~~G  364 (436)
                        ..| |....+|-+..+..|...         ...-..-+.++...+++..+.+.++  +...|+++...++++||++|
T Consensus       204 --~~~~l~~~~~p~~~~~~~g~~~~~~~~g~v~~~~l~~~~~~~~~~f~~~~i~~~~~~~g~~~~~h~~~~~~~~~vleG  281 (350)
T 1juh_A          204 --ANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEG  281 (350)
T ss_dssp             --CCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCCCBCCSSCEEEEEEES
T ss_pred             --cccccCCCCCceEECCCccchhhcccCCcEEEEEEEeCCcCceeEEEEEEEeeccccCCCCCCcccCCCcEEEEEEee
Confidence              112 111122221133333221         1111112333434678888898884  55555555578899999999


Q ss_pred             eEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCcccc
Q 046186          365 SCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPL  422 (436)
Q Consensus       365 ~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~L  422 (436)
                      ++.+++-+.   .  ..+|++||++|||+|.+|...+......++.+.+.......++
T Consensus       282 ~~~i~i~g~---~--~~~l~~Gd~~~iPag~~h~~~~~~~~~~~l~~~~g~~g~~~~~  334 (350)
T 1juh_A          282 RVVVQIGDY---A--ATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSGSDGLDQNL  334 (350)
T ss_dssp             CEEEEETTS---C--CEEECTTCEEEECTTCCEEEEESSSSEEEEEEEESSSSHHHHH
T ss_pred             EEEEEECCe---E--EEEeCCCCEEEECCCCCEEEEecCCeEEEEEEecCccchhhee
Confidence            999998642   2  2359999999999999999977655566666664323433344

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.58  E-value=1.1e-13  Score=140.49  Aligned_cols=250  Identities=14%  Similarity=0.175  Sum_probs=145.8

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      +..+.+...+|.||+...+|-|...++.||++|    +|....|.                           .+...+++
T Consensus       100 t~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG----~G~~~~vd---------------------------G~~~~~~~  148 (368)
T 3nw4_A          100 SPTMWAAIQYLGPRETAPEHRHSQNAFRFVVEG----EGVWTVVN---------------------------GDPVRMSR  148 (368)
T ss_dssp             SSSCEEEEEEECTTCEEEEEEESSCEEEECSSC----EEEEEEET---------------------------TEEEEEET
T ss_pred             CCceEEEEEEECCCCccCceecccceEEEEEec----ceEEEEEC---------------------------CEEEEEeC
Confidence            346889999999999999999998899999999    99533442                           24689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHH
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRI  223 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~v  223 (436)
                      ||+|++|+|..|.+.|+|++++++++++|..--. .|+-.|...+--.....                 ...  ..+..-
T Consensus       149 GD~v~iP~g~~H~~~N~gde~l~~l~v~D~Pl~~-~l~~~~~e~~~~~~~~~-----------------~~~--~~~~~~  208 (368)
T 3nw4_A          149 GDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQ-QMDVGFFEFGSDRVTDY-----------------ATP--NFSRGE  208 (368)
T ss_dssp             TCEEEECTTCCEEEEECSSSCEEEEEEECHHHHH-HHTCCCEEECCSSCSCC-----------------CCC--SSCHHH
T ss_pred             CCEEEECCCCcEEeEeCCCCCeEEEEecchHHHh-hcCceeeeccccccccc-----------------ccc--cCCccc
Confidence            9999999999999999999999999998864322 13322222211100000                 000  000000


Q ss_pred             Hhhhc-CC-CHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccc
Q 046186          224 LAEAF-NV-DERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLREN  301 (436)
Q Consensus       224 La~af-~v-~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~N  301 (436)
                      -...| ++ +..   ....... . .|++..         ..         +.+..           |++.   ..    
T Consensus       209 ~~~~~~~l~P~~---~~~~~~~-s-P~~~yp---------w~---------~~~~a-----------L~~~---~~----  247 (368)
T 3nw4_A          209 RLWCHPGLRPLS---GLQNTVA-S-PIGAYR---------WE---------FTDRA-----------LTEQ---LL----  247 (368)
T ss_dssp             HHHCSTTCCCGG---GCSCCSS-C-SCCEEC---------HH---------HHHHH-----------HHHH---HH----
T ss_pred             chhhcccccccc---ccCCCCC-C-CceecC---------HH---------HHHHH-----------HHhh---hh----
Confidence            00001 00 000   0000000 0 111110         00         00000           0000   00    


Q ss_pred             cCCCCCCCcccCCCeE-EEEeCCC-CCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEE
Q 046186          302 IGDPSKADIYTQGAGH-ITTLNSF-NLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVY  379 (436)
Q Consensus       302 i~~~~~~d~~~~~~G~-~~~~~~~-~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~  379 (436)
                      +.+...+|.+.+ |-. +..+|+. .=+++.  .|++....|.||.-..||=|..+ +|.||++|+|+++|   +| ..|
T Consensus       248 l~~~~~~~~~~~-g~~~~~y~NP~tg~~~~p--ti~~~~~~L~pG~~t~~hRht~s-~Vy~V~eG~G~~~I---~~-~~~  319 (368)
T 3nw4_A          248 LEDEGQPATVAP-GHAAIRYVNPTTGGDVMP--TLRCEFHRLRAGTETATRNEVGS-TVFQVFEGAGAVVM---NG-ETT  319 (368)
T ss_dssp             HHHTTCSCSSBT-TEEEEECBCTTTSSBSSS--SCEEEEEEECTTCBCCCEEESSC-EEEEEEESCEEEEE---TT-EEE
T ss_pred             hhhccCCCcccC-ceEEEEEeCCCCCCCcch--hHHhheEEECCCCccCCeecccc-EEEEEEeCcEEEEE---CC-EEE
Confidence            000001111100 112 3333322 234455  78888999999999999999755 99999999999988   23 335


Q ss_pred             EEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCC
Q 046186          380 DGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAM  418 (436)
Q Consensus       380 ~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~  418 (436)
                      +  +.+||+||||.+.+|...+. +++.+++|  ++.|.
T Consensus       320 ~--w~~gD~fvvP~w~~h~~~n~-~~a~Lf~~--~D~Pl  353 (368)
T 3nw4_A          320 K--LEKGDMFVVPSWVPWSLQAE-TQFDLFRF--SDAPI  353 (368)
T ss_dssp             E--ECTTCEEEECTTCCEEEEES-SSEEEEEE--ESHHH
T ss_pred             E--ecCCCEEEECCCCcEEEEeC-CCEEEEEE--eCHHH
Confidence            5  99999999999999988554 56766666  45543

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.57  E-value=1.6e-13  Score=130.22  Aligned_cols=190  Identities=12%  Similarity=0.157  Sum_probs=127.5

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..++.+.++.+.||.-..+|.|+.++++||++|    ++.+.+=                            .+...|++
T Consensus        34 ~~~~~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G----~~~~~i~----------------------------~~~~~l~~   81 (227)
T 3rns_A           34 QPNSYISLFSLAKDEEITAEAMLGNRYYYCFNG----NGEIFIE----------------------------NNKKTISN   81 (227)
T ss_dssp             CSSEEEEEEEECTTCEEEECSCSSCEEEEEEES----EEEEEES----------------------------SCEEEEET
T ss_pred             CCCcEEEEEEECCCCccCccccCCCEEEEEEeC----EEEEEEC----------------------------CEEEEECC
Confidence            346788999999999999999999999999999    9998751                            23689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHH
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRI  223 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~v  223 (436)
                      ||++++|+|++|.+.|.  ++++++.++- .....|                                       ++.  
T Consensus        82 Gd~~~~p~~~~H~~~a~--~~~~~l~i~~-~~~~~~---------------------------------------~~~--  117 (227)
T 3rns_A           82 GDFLEITANHNYSIEAR--DNLKLIEIGE-KIGDGN---------------------------------------MEN--  117 (227)
T ss_dssp             TEEEEECSSCCEEEEES--SSEEEEEEEE-CC------------------------------------------------
T ss_pred             CCEEEECCCCCEEEEEC--CCcEEEEEEe-ecccch---------------------------------------hhh--
Confidence            99999999999999986  4577666532 110000                                       000  


Q ss_pred             HhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccC
Q 046186          224 LAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIG  303 (436)
Q Consensus       224 La~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~  303 (436)
                               +.++.+..     +.++...+.+    +                                           
T Consensus       118 ---------~~~~~l~~-----~~~~~~~d~~----~-------------------------------------------  136 (227)
T 3rns_A          118 ---------KTLKMLES-----ASAFNLAEVV----E-------------------------------------------  136 (227)
T ss_dssp             -----------------------CCEESGGGS----C-------------------------------------------
T ss_pred             ---------hHhhcCCc-----cccCcHHHcc----c-------------------------------------------
Confidence                     00111110     0122211100    0                                           


Q ss_pred             CCCCCCcccCCCeEE-EEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEE
Q 046186          304 DPSKADIYTQGAGHI-TTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGE  382 (436)
Q Consensus       304 ~~~~~d~~~~~~G~~-~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~  382 (436)
                             |. .++.. +.+-       ..-++++..+.+.||+...+|||+ ..++.||++|++.+.+=   |.   ...
T Consensus       137 -------~~-~g~~~~~~l~-------~~~~~~~~~~~~~~G~~~~~H~H~-~~e~~~Vl~G~~~~~i~---g~---~~~  194 (227)
T 3rns_A          137 -------YQ-EGKIVSKNLV-------AKPNLVMTIMSFWKGESLDPHKAP-GDALVTVLDGEGKYYVD---GK---PFI  194 (227)
T ss_dssp             -------CC-TTCEEEEEEE-------EETTEEEEEEEECTTCEEEEECCS-SEEEEEEEEEEEEEEET---TE---EEE
T ss_pred             -------cC-CCCEEEEEEE-------ECCCeEEEEEEECCCCccCCEECC-CcEEEEEEeEEEEEEEC---CE---EEE
Confidence                   00 01111 1110       011577889999999999999998 56999999999999862   23   345


Q ss_pred             ecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          383 VRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       383 l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      |++||.++||++.+|...++.++++++...
T Consensus       195 l~~Gd~i~ip~~~~H~~~~~~~~~~~ll~~  224 (227)
T 3rns_A          195 VKKGESAVLPANIPHAVEAETENFKMLLIL  224 (227)
T ss_dssp             EETTEEEEECTTSCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEECCCCcEEEEeCCCCEEEEEEE
Confidence            999999999999999986645677777654

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.54  E-value=1.2e-12  Score=127.54  Aligned_cols=198  Identities=8%  Similarity=0.039  Sum_probs=139.1

Q ss_pred             ccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceee
Q 046186           60 EQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIR  139 (436)
Q Consensus        60 p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~  139 (436)
                      |.+ +..+.+..++|.|||-..+|.|.+.|++||++|    +..+.+=                           ..+.+
T Consensus        64 P~~-G~~f~~~lv~l~PGg~s~~~~h~~EEfiyVleG----~l~l~l~---------------------------~g~~~  111 (266)
T 4e2q_A           64 PAT-GSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEG----AVTLTNT---------------------------SSSSK  111 (266)
T ss_dssp             GGG-TCSSEEEEEEECSSEECCCCCTTEEEEEEEEEE----CEEEEC-----------------------------CCCE
T ss_pred             CCC-CCcEEEEEEEECcCCcCCCCCCCCeEEEEEEEE----EEEEEEC---------------------------CCcEE
Confidence            444 467899999999999987777779999999999    8888741                           02368


Q ss_pred             eeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccC
Q 046186          140 RFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGF  219 (436)
Q Consensus       140 ~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf  219 (436)
                      .|++||.+++|+|..|++.|.  ++++++++.....+.                                       .| 
T Consensus       112 ~L~~Gds~y~p~~~~H~~~N~--~~Ar~l~V~k~y~~~---------------------------------------~g-  149 (266)
T 4e2q_A          112 KLTVDSYAYLPPNFHHSLDCV--ESATLVVFERRYEYL---------------------------------------GS-  149 (266)
T ss_dssp             EECTTEEEEECTTCCCEEEES--SCEEEEEEEEECCCC---------------------------------------TT-
T ss_pred             EEcCCCEEEECCCCCEEEEeC--CCEEEEEEEeEeeeC---------------------------------------CC-
Confidence            999999999999999999995  678877765422211                                       01 


Q ss_pred             CHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecc
Q 046186          220 DTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLR  299 (436)
Q Consensus       220 ~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~  299 (436)
                                           ...  ..+|.=..++   .|..                       ..|           
T Consensus       150 ---------------------~~p--~~~v~~~~dv---~~~~-----------------------~~g-----------  169 (266)
T 4e2q_A          150 ---------------------HTT--ELIVGSTDKQ---PLLE-----------------------TPG-----------  169 (266)
T ss_dssp             ---------------------CCC--CCEEEEGGGS---CCBC-----------------------CTT-----------
T ss_pred             ---------------------CCC--ceeeCcHhHC---CCcc-----------------------cCC-----------
Confidence                                 001  1233211111   1100                       001           


Q ss_pred             cccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecc-cccCCCcEEEEEEeeeEEEEEEeCCCCeE
Q 046186          300 ENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVP-HWNLNAHSIMYAISGSCHVQVVDSYGRSV  378 (436)
Q Consensus       300 ~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~P-Hwh~~A~ei~yV~~G~grv~vv~~~G~~~  378 (436)
                                    .+-..+.+.+.++    .-++.+..+.|+|||.... |.|... +..||++|+|.+.+=    .. 
T Consensus       170 --------------~~~~~r~l~p~~~----~~d~~~~~~t~~PG~~~p~~e~H~~e-h~~~vL~G~g~y~l~----~~-  225 (266)
T 4e2q_A          170 --------------EVFELRKLLPMSV----AYDFNIHTMDFQPGEFLNVKEVHYNQ-HGLLLLEGQGIYRLG----DN-  225 (266)
T ss_dssp             --------------CCSEEEESSCCST----TCSEEEEEEEECTTCBCSSCCCCSCC-EEEEEEECEEEEEET----TE-
T ss_pred             --------------CcEEEEEccCccc----ccceEEEEEEECCCcCcCCceEcccc-eEEEEEeceEEEEEC----CE-
Confidence                          1112333344442    2388999999999999996 788655 889999999998842    22 


Q ss_pred             EEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCC
Q 046186          379 YDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDN  416 (436)
Q Consensus       379 ~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~  416 (436)
                       ...|++||++++|.+.+|.. +.|+++|+||..+.--+
T Consensus       226 -~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl~ykd~nr  263 (266)
T 4e2q_A          226 -WYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNR  263 (266)
T ss_dssp             -EEEEETTCEEEECTTCCEEEEEESSSCEEEEEEEECSS
T ss_pred             -EEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEccccC
Confidence             34599999999999999998 88899999999986543

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.54  E-value=2.3e-14  Score=145.56  Aligned_cols=102  Identities=22%  Similarity=0.323  Sum_probs=90.6

Q ss_pred             cCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEE
Q 046186          312 TQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVV  391 (436)
Q Consensus       312 ~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vV  391 (436)
                      ...+|+++.++..+||.++  ++++.++.|.||++.+||||+ +.||.||++|++++++++.+|+. +...|++||+++|
T Consensus        59 ~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g~~-~~~~l~~GD~~~i  134 (385)
T 1j58_A           59 LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYF  134 (385)
T ss_dssp             EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCE-EEEEEETTEEEEE
T ss_pred             ccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCCcE-EEEEeCCCCEEEE
Confidence            3589999999999999999  899999999999999999999 88999999999999999988775 3336999999999


Q ss_pred             cCCCEEEE-EeCCCcEEEEEEEecCCCC
Q 046186          392 PQNFAVVK-RAGGAEFEWISFKTNDNAM  418 (436)
Q Consensus       392 P~g~~h~~-~ag~e~~~~l~f~~s~~p~  418 (436)
                      |+|.+|.+ +.+ ++++|+..+......
T Consensus       135 p~g~~H~~~n~~-~~~~~~~v~~~~~~~  161 (385)
T 1j58_A          135 PSGLPHSIQALE-EGAEFLLVFDDGSFS  161 (385)
T ss_dssp             CTTCCEEEEEEE-EEEEEEEEESCTTCC
T ss_pred             CCCCeEEEEECC-CCEEEEEEECCCCcc
Confidence            99999998 555 579999988776553

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.54  E-value=4.2e-13  Score=131.52  Aligned_cols=202  Identities=13%  Similarity=0.114  Sum_probs=135.6

Q ss_pred             ccceEEEEEEecCCcee-cC-eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           64 CAGVAVVRHTIRQKGLL-LP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~-~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      ...+.+.+++|.||+-. .| |.|+..|++||++|    ++.+.+                            ..+.+.|
T Consensus        65 ~~~~~~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G----~l~v~v----------------------------~g~~~~L  112 (278)
T 1sq4_A           65 AETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEG----ELSLTL----------------------------QGQVHAM  112 (278)
T ss_dssp             CCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEES----CEEEEE----------------------------SSCEEEE
T ss_pred             CCcEEEEEEEECCCCccCCCCcCCCceEEEEEEeC----EEEEEE----------------------------CCEEEEE
Confidence            45689999999999976 34 66789999999999    888875                            1236899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCH
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDT  221 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~  221 (436)
                      ++||.++||+|++|.+.|.++++++++++.....+.            .                           |.+ 
T Consensus       113 ~~GD~i~ip~~~~H~~~N~g~~~~~~l~v~~~y~~~------------~---------------------------g~~-  152 (278)
T 1sq4_A          113 QPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKV------------D---------------------------GVP-  152 (278)
T ss_dssp             CTTEEEEECTTCCEEEECCSSSCEEEEEEEEECCCC------------T---------------------------TCC-
T ss_pred             CCCCEEEECCCCcEEEEECCCCCEEEEEEEeccccC------------C---------------------------CCc-
Confidence            999999999999999999999999988876422211            0                           111 


Q ss_pred             HHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccc
Q 046186          222 RILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLREN  301 (436)
Q Consensus       222 ~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~N  301 (436)
                                          .. . .++.-..++   .|....                    ...|     +.+..+ .
T Consensus       153 --------------------~p-~-~~vgn~~di---~~~~~~--------------------~~~~-----~~~~~r-~  181 (278)
T 1sq4_A          153 --------------------LP-E-AFVTNEQDI---QPLVMP--------------------DTEG-----RWSTTR-F  181 (278)
T ss_dssp             --------------------CC-C-CEEEEGGGS---CCEECS--------------------SGGG-----CEEEEC-S
T ss_pred             --------------------CC-c-ccccchhhc---CcccCC--------------------CCCC-----ceeEEE-E
Confidence                                00 0 111100111   000000                    0000     000001 1


Q ss_pred             cCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEE
Q 046186          302 IGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDG  381 (436)
Q Consensus       302 i~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~  381 (436)
                      +. |.                  +    ...++.+..+.|.||+-...|-|..-.+..||++|++.+.+   +|+.   .
T Consensus       182 l~-p~------------------~----~~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~~---~  232 (278)
T 1sq4_A          182 VD-MS------------------D----MRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQDW---V  232 (278)
T ss_dssp             SC-TT------------------C----TTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTEE---E
T ss_pred             ec-CC------------------C----cCCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCEE---E
Confidence            11 11                  1    02278899999999999997443334578999999998875   2332   4


Q ss_pred             EecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCC
Q 046186          382 EVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNA  417 (436)
Q Consensus       382 ~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p  417 (436)
                      +|++||+++++.+-+|.+ |.|+++|+|+.++.--+.
T Consensus       233 ~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~~~d~nr~  269 (278)
T 1sq4_A          233 EVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRH  269 (278)
T ss_dssp             EEETTCEEEEEESCCEEEECCSSSCEEEEEEEECSSC
T ss_pred             EeCCCCEEEECCCCCEEEEcCCCCCEEEEEEEEcCCC
Confidence            599999999999999987 889999999999865544

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.51  E-value=1.5e-14  Score=119.46  Aligned_cols=57  Identities=26%  Similarity=0.508  Sum_probs=53.4

Q ss_pred             EEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecC-CCCcccccc-ccccccccCCC
Q 046186          378 VYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTND-NAMISPLSG-RTSVMRGKGRR  435 (436)
Q Consensus       378 ~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~-~p~~~~LaG-~~sv~~~lp~e  435 (436)
                      .++++|++|||||||+|||++++|++ +|+||+|+||+ ++++++||| ++|||++||.|
T Consensus         5 ~~~~~l~~G~v~vVPq~~~v~~~A~~-~le~v~F~tna~~~~~~~LAG~~~Svl~~l~~e   63 (93)
T 1dgw_Y            5 RYAATLSEGDIIVIPSSFPVALKAAS-DLNMVGIGVNAENNERNFLAGHKENVIRQIPRQ   63 (93)
T ss_dssp             EEEEEECTTCEEEECTTCCEEEEESS-SEEEEEEEESCTTCCEEESSSSTTBSTTTSCHH
T ss_pred             hhhceecCCcEEEECCCCceeEEecC-CeEEEEEEecCCCCeeeeccCCcccHHHhCCHH
Confidence            57899999999999999999999997 69999999999 889999999 99999999964

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.48  E-value=1.4e-11  Score=118.26  Aligned_cols=195  Identities=12%  Similarity=0.062  Sum_probs=133.0

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ...+.+.+++|.||+-..+|+  ..|++||++|    ++.+.+                            ..+.+.|++
T Consensus        47 ~~~~~~~~~~l~Pg~~~~~~~--~ee~~~Vl~G----~~~~~~----------------------------~~~~~~l~~   92 (246)
T 1sfn_A           47 GARFVQFTAEMPAGAQATESV--YQRFAFVLSG----EVDVAV----------------------------GGETRTLRE   92 (246)
T ss_dssp             CCSSEEEEEEECTTCEEECCS--SEEEEEEEEE----EEEEEC----------------------------SSCEEEECT
T ss_pred             CCcEEEEEEEECCCCcCCCCc--eeEEEEEEEC----EEEEEE----------------------------CCEEEEECC
Confidence            346788999999999887776  8899999999    888874                            124689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHH
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRI  223 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~v  223 (436)
                      ||.+++|+|.+|.+.|.  +++.++++.....+..                                       +.+   
T Consensus        93 Gd~~~~p~~~~H~~~n~--~~~~~l~v~~~y~~~~---------------------------------------g~~---  128 (246)
T 1sfn_A           93 YDYVYLPAGEKHMLTAK--TDARVSVFEKPYQTVE---------------------------------------GVQ---  128 (246)
T ss_dssp             TEEEEECTTCCCEEEEE--EEEEEEEEEECCCCBT---------------------------------------TBC---
T ss_pred             CCEEEECCCCCEEEEeC--CCEEEEEEEeeeccCC---------------------------------------CCc---
Confidence            99999999999999998  6677776654332211                                       111   


Q ss_pred             HhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccC
Q 046186          224 LAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIG  303 (436)
Q Consensus       224 La~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~  303 (436)
                                        .. . .++.-..++.   +..             -   .    ...|               
T Consensus       129 ------------------~p-~-~~vg~~~dv~---~~~-------------~---~----~~~g---------------  150 (246)
T 1sfn_A          129 ------------------AP-G-VYWGNERENP---GYP-------------F---E----GDDH---------------  150 (246)
T ss_dssp             ------------------CC-C-CEEEETTTCC---CEE-------------T---T----SCTT---------------
T ss_pred             ------------------CC-c-eeeccHhhCC---ccc-------------c---C----CCCC---------------
Confidence                              00 0 1221111110   000             0   0    0122               


Q ss_pred             CCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEe
Q 046186          304 DPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEV  383 (436)
Q Consensus       304 ~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l  383 (436)
                                  -..+.+.+.+.    ..++.+..+.|.||+-...|.|....+..||++|++.+.+   +|+ .+  .|
T Consensus       151 ------------~~~r~l~p~~~----~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~-~~--~l  208 (246)
T 1sfn_A          151 ------------LIARKLLPDEP----AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EEN-YY--PV  208 (246)
T ss_dssp             ------------EEEEECSCCCT----TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTE-EE--EE
T ss_pred             ------------eEEEEeCCCcc----CCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCE-EE--Ec
Confidence                        11111222111    2278889999999999887544455699999999999986   223 33  59


Q ss_pred             cCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCC
Q 046186          384 RRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDN  416 (436)
Q Consensus       384 ~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~  416 (436)
                      ++||.++++.+-+|.. |.|++++.|+.++.--+
T Consensus       209 ~~GD~~~~~~~~pH~~~n~g~~~~~yl~~kd~~r  242 (246)
T 1sfn_A          209 TAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMNR  242 (246)
T ss_dssp             ETTCEEEECTTCCEEEEEESSSCEEEEEEEECSS
T ss_pred             CCCCEEEECCCCCEEEEcCCCCCEEEEEEEeccc
Confidence            9999999999999987 88999999999986543

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.42  E-value=8.1e-13  Score=109.11  Aligned_cols=84  Identities=19%  Similarity=0.244  Sum_probs=70.0

Q ss_pred             eeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccc
Q 046186          138 IRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFC  217 (436)
Q Consensus       138 ~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~  217 (436)
                      ..+|++||||+||+|++....+..  ++.+|+ |.++...|      ..+||||+.                   +|+|+
T Consensus         7 ~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~-F~tna~~~------~~~~LAG~~-------------------~Svl~   58 (93)
T 1dgw_Y            7 AATLSEGDIIVIPSSFPVALKAAS--DLNMVG-IGVNAENN------ERNFLAGHK-------------------ENVIR   58 (93)
T ss_dssp             EEEECTTCEEEECTTCCEEEEESS--SEEEEE-EEESCTTC------CEEESSSST-------------------TBSTT
T ss_pred             hceecCCcEEEECCCCceeEEecC--CeEEEE-EEecCCCC------eeeeccCCc-------------------ccHHH
Confidence            489999999999999999999874  499988 55554334      599999931                   79999


Q ss_pred             cCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEE
Q 046186          218 GFDTRILAEAFNVDERLVRRLRSEKDYRGAIVT  250 (436)
Q Consensus       218 gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~  250 (436)
                      ++|.++|+.||+++.+++++|+.++++ +.|+.
T Consensus        59 ~l~~evla~aF~~s~ee~~~l~~~q~e-~~~~~   90 (93)
T 1dgw_Y           59 QIPRQVSDLTFPGSGEEVEELLENQKE-SYFVD   90 (93)
T ss_dssp             TSCHHHHHHHSSSCTHHHHHHTTSCCC-CSEEC
T ss_pred             hCCHHHHHHHcCCCHHHHHHHHhcCCC-ceecc
Confidence            999999999999999999999988763 46653

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.29  E-value=4e-12  Score=102.05  Aligned_cols=70  Identities=11%  Similarity=0.142  Sum_probs=61.9

Q ss_pred             cccccCCCceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCC
Q 046186           35 NLEALEPNNRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPG  110 (436)
Q Consensus        35 ~l~a~eP~~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg  110 (436)
                      +|...+|.  +.+..|.....+ .++|.|+.+|++++++.|.||||++||||+ |+|++||++|    ++.+++|+|.
T Consensus         5 nl~~~~p~--~~n~~G~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G----~~~v~~V~~~   76 (79)
T 1dgw_X            5 NLRSRDPI--YSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEG----RAEVELVGLE   76 (79)
T ss_dssp             ETTSSCCS--EECSSEEEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEES----CEEEEEEEEC
T ss_pred             ccccCCCC--ccCCCCcEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEec----eEEEEEecCC
Confidence            56667786  788999864444 578999999999999999999999999999 9999999999    9999999873

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.21  E-value=1.9e-10  Score=104.23  Aligned_cols=84  Identities=10%  Similarity=0.137  Sum_probs=73.5

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..++.+..+++.||+...+|||+..|++||++|    ++.+.+                            ..+.+.|++
T Consensus        53 ~~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G----~~~~~i----------------------------~~~~~~l~~  100 (167)
T 3ibm_A           53 APAFETRYFEVEPGGYTTLERHEHTHVVMVVRG----HAEVVL----------------------------DDRVEPLTP  100 (167)
T ss_dssp             SSSEEEEEEEECTTCBCCCBBCSSCEEEEEEES----EEEEEE----------------------------TTEEEEECT
T ss_pred             CCcEEEEEEEECCCCCCCCccCCCcEEEEEEeC----EEEEEE----------------------------CCEEEEECC
Confidence            457889999999999999999999999999999    998874                            134789999


Q ss_pred             CcEEEeCCCCeEEEeccC-CCcEEEEEEEecCCCCCc
Q 046186          144 GDIFALPAGVAHWCYNEG-STPVVAVVLLDVANNDNQ  179 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~~n~~nq  179 (436)
                      ||+++||+|++|++.|.+ ++++++++++.......|
T Consensus       101 Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~~d~p~  137 (167)
T 3ibm_A          101 LDCVYIAPHAWHQIHATGANEPLGFLCIVDSDRDRPQ  137 (167)
T ss_dssp             TCEEEECTTCCEEEEEESSSCCEEEEEEEESSCCCCB
T ss_pred             CCEEEECCCCcEEEEeCCCCCCEEEEEEEeCCcCccc
Confidence            999999999999999999 999999998876654433

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.20  E-value=1.7e-10  Score=103.31  Aligned_cols=114  Identities=14%  Similarity=0.121  Sum_probs=81.8

Q ss_pred             cccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCc
Q 046186           35 NLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPET  114 (436)
Q Consensus        35 ~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et  114 (436)
                      ++...++... ..++.....+... +.....++.+.++++.||+...+|+|+..|++||++|    ++.+.+-.  +.++
T Consensus        11 ~~~~~~~~~~-~~~G~~~~~l~~~-~~~g~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G----~~~~~~~~--~~~~   82 (163)
T 1lr5_A           11 DISQMPQSSY-GIEGLSHITVAGA-LNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKG----KGTLLMGS--SSLK   82 (163)
T ss_dssp             EGGGSCCBCT-TCTTEEEEEEECH-HHHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEEC----CEEEEECC--SSSS
T ss_pred             ChHHCChhhc-cCCCcceEEEecc-ccCCCCcEEEEEEEECCCCcCCCeECCCCeEEEEEeC----EEEEEECC--cccc
Confidence            5555555433 3344444444211 1122346889999999999999999999999999999    99887632  2121


Q ss_pred             ccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC-CCcEEEEEEEec
Q 046186          115 YQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG-STPVVAVVLLDV  173 (436)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~  173 (436)
                      |+                 ...+...|++||+++||+|++|++.|.+ ++++++++++..
T Consensus        83 ~~-----------------~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~  125 (163)
T 1lr5_A           83 YP-----------------GQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISR  125 (163)
T ss_dssp             SC-----------------CSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEES
T ss_pred             cc-----------------CccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEECC
Confidence            11                 0124789999999999999999999999 899999988764

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.19  E-value=1.1e-10  Score=99.27  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      +.++.+.++++.||+...+|||+ ..|++||++|    ++.+.+-                           ..+...|+
T Consensus        36 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G----~~~~~~~---------------------------~~~~~~l~   84 (125)
T 3h8u_A           36 TNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISG----EAEYHQG---------------------------NGIVTHLK   84 (125)
T ss_dssp             CSSCEEEEEEECTTCEECCC-CTTCEEEEEEEEC----EEEEECS---------------------------TTCEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCeEEEEEEEe----EEEEEEC---------------------------CCeEEEeC
Confidence            44678999999999999999999 5899999999    8887631                           12468999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      +||++++|+|++|++.|.+++++++++++....
T Consensus        85 ~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p~~  117 (125)
T 3h8u_A           85 AGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPGN  117 (125)
T ss_dssp             TTEEEEECTTCCCEEEECSSSCEEEEEEEESTT
T ss_pred             CCCEEEECCCCEEEeEeCCCCCEEEEEEECCCc
Confidence            999999999999999999999999999887543

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.13  E-value=4.9e-10  Score=100.69  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=71.5

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .++.+..+++.||+...+|||+..|++||++|    ++.+.+                            ..+.+.|++|
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G----~~~v~v----------------------------~g~~~~l~~G   89 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHAHVHAVMIHRG----HGQCLV----------------------------GETISDVAQG   89 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEE----EEEEEE----------------------------TTEEEEEETT
T ss_pred             CcEEEEEEEECCCCccCceeCCCcEEEEEEeC----EEEEEE----------------------------CCEEEEeCCC
Confidence            56888999999999999999999999999999    998874                            1347899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCCC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVANN  176 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~  176 (436)
                      |+++||+|++|.+.|.+++++++++++.....
T Consensus        90 d~i~ip~~~~H~~~n~g~~~~~~l~i~~~~~d  121 (156)
T 3kgz_A           90 DLVFIPPMTWHQFRANRGDCLGFLCVVNAARD  121 (156)
T ss_dssp             CEEEECTTCCEEEECCSSSCEEEEEEEESSCC
T ss_pred             CEEEECCCCcEEeEeCCCCCEEEEEEEeCCCC
Confidence            99999999999999999999999998875543

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.12  E-value=3.8e-10  Score=91.55  Aligned_cols=79  Identities=16%  Similarity=0.124  Sum_probs=68.6

Q ss_pred             cccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           63 QCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        63 ~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      ...++.+..+++.||+...+|+|+ ..|++||++|    ++.+.+                            ..+...|
T Consensus        24 ~~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G----~~~~~~----------------------------~~~~~~l   71 (105)
T 1v70_A           24 QSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEG----EVVVRV----------------------------GEEEALL   71 (105)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSSCEEEEEEEES----CEEEEE----------------------------TTEEEEE
T ss_pred             CCCceEEEEEEECCCCcCCccCCCCCcEEEEEEeC----EEEEEE----------------------------CCEEEEe
Confidence            345688999999999999999999 5789999999    888864                            1246899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      ++||++++|+|.+|++.|.+++++.+++++..
T Consensus        72 ~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p  103 (105)
T 1v70_A           72 APGMAAFAPAGAPHGVRNESASPALLLVVTAP  103 (105)
T ss_dssp             CTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred             CCCCEEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence            99999999999999999999999998887653

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.12  E-value=3.3e-10  Score=101.17  Aligned_cols=81  Identities=17%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             cccceEEEEEEecCCc-eecCeee-cCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeee
Q 046186           63 QCAGVAVVRHTIRQKG-LLLPQFS-NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRR  140 (436)
Q Consensus        63 ~~~gv~~~r~~i~pg~-l~~Ph~h-~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~  140 (436)
                      ...++.+..+++.||+ ...+||| +..|++||++|    ++.+.+                            ..+.+.
T Consensus        42 g~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G----~~~~~~----------------------------~~~~~~   89 (162)
T 3l2h_A           42 GLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSG----KGTLTM----------------------------ENDQYP   89 (162)
T ss_dssp             TCCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEES----CEEEEE----------------------------TTEEEE
T ss_pred             CCCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEE----EEEEEE----------------------------CCEEEE
Confidence            3457899999999999 5899999 59999999999    888874                            134689


Q ss_pred             eccCcEEEeCCC-CeEEEeccCCCcEEEEEEEecCC
Q 046186          141 FRQGDIFALPAG-VAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       141 l~~GDv~~iPaG-~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      |++||+++||+| .+|++.|.++++++++++.....
T Consensus        90 l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~~  125 (162)
T 3l2h_A           90 IAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLD  125 (162)
T ss_dssp             ECTTCEEEECTTSCCEEEECCSSSCEEEEEEEECCS
T ss_pred             eCCCCEEEECCCCceEEeEeCCCCCEEEEEEECCCC
Confidence            999999999997 99999999999999998876543

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.09  E-value=4.1e-10  Score=92.24  Aligned_cols=76  Identities=18%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             ccceEEEEEEecCCceecCeeecCC-ceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccc-eeeee
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSP-QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQ-KIRRF  141 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~-ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~-k~~~l  141 (436)
                      ...+.+.++++.||+...+|.|+.. +++||++|    ++.+.+=                           .. +...|
T Consensus        15 ~~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G----~~~~~~~---------------------------~g~~~~~l   63 (97)
T 2fqp_A           15 NERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTG----PLLLETP---------------------------EGSVTSQL   63 (97)
T ss_dssp             SSSEEEEEEEECTTCBCCSEECCSCEEEEESSCE----EEEEEET---------------------------TEEEEEEE
T ss_pred             CCeEEEEEEEECCCCCCCCEECCCCcEEEEEeec----EEEEEeC---------------------------CCCEEEEE
Confidence            3468899999999999999999976 69999999    8888741                           11 46899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      ++||++++|+|.+|++.|.++++++++.+
T Consensus        64 ~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           64 TRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             CTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             cCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            99999999999999999999999988765

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.07  E-value=6.9e-10  Score=100.77  Aligned_cols=79  Identities=11%  Similarity=0.083  Sum_probs=70.5

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .++.+..+++.||+...+|||+..|++||++|    ++.+.+                            ..+.+.|++|
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G----~~~~~v----------------------------~g~~~~l~~G   98 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQHAHGVMILKG----RGHAMV----------------------------GRAVSAVAPY   98 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEE----CEEEEE----------------------------TTEEEEECTT
T ss_pred             CeEEEEEEEECCCCccCceeCCCcEEEEEEeC----EEEEEE----------------------------CCEEEEeCCC
Confidence            56888999999999999999999999999999    998864                            1347899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      |+++||+|++|.+.|.+++++++++++....
T Consensus        99 D~i~ip~g~~H~~~n~~~~~~~~l~i~~~~~  129 (166)
T 3jzv_A           99 DLVTIPGWSWHQFRAPADEALGFLCMVNAER  129 (166)
T ss_dssp             CEEEECTTCCEEEECCTTSCEEEEEEEESSC
T ss_pred             CEEEECCCCcEEeEeCCCCCEEEEEEEccCC
Confidence            9999999999999999999999999887543

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.06  E-value=9.4e-10  Score=90.84  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=69.7

Q ss_pred             cccceEEEEEEecCCceecCe--eec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceee
Q 046186           63 QCAGVAVVRHTIRQKGLLLPQ--FSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIR  139 (436)
Q Consensus        63 ~~~gv~~~r~~i~pg~l~~Ph--~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~  139 (436)
                      ...++.+.++++.||+...+|  +|+ ..|++||++|    ++.+.+                            ..+..
T Consensus        17 ~~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G----~~~~~~----------------------------~~~~~   64 (113)
T 2gu9_A           17 SLRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDG----AGEAIV----------------------------DGHTQ   64 (113)
T ss_dssp             EETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEEC----CEEEEE----------------------------TTEEE
T ss_pred             cCCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeC----EEEEEE----------------------------CCEEE
Confidence            345788999999999998888  999 8999999999    888875                            12468


Q ss_pred             eeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          140 RFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       140 ~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      .|++||+++||+|.+|++.|.+++++++++++...
T Consensus        65 ~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~   99 (113)
T 2gu9_A           65 ALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP   99 (113)
T ss_dssp             EECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred             EeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence            99999999999999999999999999988887644

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.06  E-value=8.2e-10  Score=95.72  Aligned_cols=82  Identities=13%  Similarity=0.205  Sum_probs=70.6

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..++.+..+++.||+...+|||+..+++||++|    ++.+.+...                          .+...|++
T Consensus        36 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G----~~~~~~~~~--------------------------~~~~~l~~   85 (145)
T 3ht1_A           36 ADRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEG----SMGLVLPDQ--------------------------GRTEEVGP   85 (145)
T ss_dssp             CCSEEEEEEEEEEEEECCCEECSSCEEEEEEEE----CEEEEEGGG--------------------------TEEEEECT
T ss_pred             CCcEEEEEEEECCCCcCCCccCCCceEEEEEEe----EEEEEEeEC--------------------------CEEEEECC
Confidence            346899999999999999999999999999999    888872111                          24689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      ||++++|+|++|++.|.+++++.+++++....
T Consensus        86 Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~~  117 (145)
T 3ht1_A           86 GEAIFIPRGEPHGFVTGPGQTCRFLVVAPCER  117 (145)
T ss_dssp             TCEEEECTTCCBEEECCTTCCEEEEEEEESCC
T ss_pred             CCEEEECCCCeEEeEcCCCCCEEEEEEECCCC
Confidence            99999999999999999999999998876554

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.05  E-value=2.7e-10  Score=94.54  Aligned_cols=80  Identities=16%  Similarity=0.188  Sum_probs=65.5

Q ss_pred             ccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeee
Q 046186           62 FQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRR  140 (436)
Q Consensus        62 l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~  140 (436)
                      +....+.+.+++++||+-+.+|+|+ ..++.||++|    ++++..  ++                       ...+...
T Consensus        12 ien~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G----~~~v~~--~d-----------------------~~~~~~~   62 (98)
T 3lag_A           12 IDNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADG----EMTIVA--PD-----------------------GTRSLAQ   62 (98)
T ss_dssp             EESSSEEEEEEEECTTEECCSEECCSCEEEEESSCB----C-CEEC--TT-----------------------SCEECCC
T ss_pred             EcCCeEEEEEEEECCCCccCcEECCCcEEEEEEecc----EEEEEe--CC-----------------------CceEEEE
Confidence            4445699999999999999999999 5577778899    887753  21                       1234578


Q ss_pred             eccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          141 FRQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       141 l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      |++||++++|+|..|.+.|.|+++|++|-+
T Consensus        63 l~~G~~~~ip~G~~H~~~N~g~~pl~~IeV   92 (98)
T 3lag_A           63 LKTGRSYARKAGVQHDVRNESTAEIVFLEI   92 (98)
T ss_dssp             BCTTCCEEECTTCEEEEBCCSSSCEEEEEE
T ss_pred             ecCCcEEEEcCCCcEECEECCCCeEEEEEE
Confidence            999999999999999999999999999875

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.05  E-value=1.2e-09  Score=91.99  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceee-eecc
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIR-RFRQ  143 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~-~l~~  143 (436)
                      .++.+.++++.||+...+|||+..+++||++|    ++.+.+  .                          .+.. .|++
T Consensus        25 ~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G----~~~~~i--~--------------------------~~~~~~l~~   72 (117)
T 2b8m_A           25 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKG----EMTLTL--E--------------------------DQEPHNYKE   72 (117)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEES----EEEEEE--T--------------------------TSCCEEEET
T ss_pred             CceEEEEEEECCCCcCCCEeCCCcEEEEEEeC----EEEEEE--C--------------------------CEEEEEeCC
Confidence            45788889999999999999999999999999    998875  1                          1246 9999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      ||++++|+|.+|++.|.+++++.++++.
T Consensus        73 Gd~i~ip~~~~H~~~~~~~~~~~~l~i~  100 (117)
T 2b8m_A           73 GNIVYVPFNVKMLIQNINSDILEFFVVK  100 (117)
T ss_dssp             TCEEEECTTCEEEEECCSSSEEEEEEEE
T ss_pred             CCEEEECCCCcEEeEcCCCCCEEEEEEE
Confidence            9999999999999999999888888763

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.04  E-value=7.4e-10  Score=93.80  Aligned_cols=78  Identities=24%  Similarity=0.303  Sum_probs=66.7

Q ss_pred             ccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           62 FQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        62 l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      +...++.+.++++.||....+|||+..+++||++|    ++.+.+                            ..+.+.|
T Consensus        31 ~~~~~~~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G----~~~~~i----------------------------~~~~~~l   78 (114)
T 3fjs_A           31 FKEHRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEG----EVEIGV----------------------------DGAQRRL   78 (114)
T ss_dssp             EEETTEEEEEEEECTTCEEEEECCSSCEEEEEEES----CEEEEE----------------------------TTEEEEE
T ss_pred             EeCCCEEEEEEEECCCCccCceeCCCcEEEEEEEC----EEEEEE----------------------------CCEEEEE
Confidence            34567899999999999999999999999999999    888875                            1346899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      ++||+++||+|++|++.|.++..+.++.++
T Consensus        79 ~~Gd~i~ip~~~~H~~~~~~~~~~~~~~v~  108 (114)
T 3fjs_A           79 HQGDLLYLGAGAAHDVNAITNTSLLVTVVL  108 (114)
T ss_dssp             CTTEEEEECTTCCEEEEESSSEEEEEEEEC
T ss_pred             CCCCEEEECCCCcEEEEeCCCcEEEEEEEe
Confidence            999999999999999999977666655544

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.03  E-value=1.4e-09  Score=92.52  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=67.5

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..++.+.++++.||+...+|+|+..|++||++|    ++.+.+                            ..+...|++
T Consensus        38 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G----~~~~~~----------------------------~~~~~~l~~   85 (126)
T 4e2g_A           38 GKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEG----TLELTI----------------------------GEETRVLRP   85 (126)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSEEEEEEEEE----CEEEEE----------------------------TTEEEEECT
T ss_pred             CCCeEEEEEEECCCCcCCCccCCCceEEEEEEe----EEEEEE----------------------------CCEEEEeCC
Confidence            446899999999999999999999999999999    888875                            124689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      ||+++||+|++|.+.|.++ +++++.++..
T Consensus        86 Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p  114 (126)
T 4e2g_A           86 GMAYTIPGGVRHRARTFED-GCLVLDIFSP  114 (126)
T ss_dssp             TEEEEECTTCCEEEECCTT-CEEEEEEEES
T ss_pred             CCEEEECCCCcEEeEECCC-CEEEEEEECC
Confidence            9999999999999999987 7888877764

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.03  E-value=1.2e-09  Score=96.29  Aligned_cols=85  Identities=15%  Similarity=0.111  Sum_probs=68.1

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ..++.+.++++.||+...+|||+ ..|++||++|    ++.+.+-..                    .  +.......|+
T Consensus        40 ~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G----~~~~~i~~~--------------------~--~~~~~~~~l~   93 (148)
T 2oa2_A           40 GDHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEG----RGLVQMGHR--------------------Q--DNLHFQEEVF   93 (148)
T ss_dssp             CSSCEEEEEEECTTCBCCCBCCTTCEEEEEEEES----EEEEEEESB--------------------T--TBCCEEEEEE
T ss_pred             CCceEEEEEEECCCCccCceECCCCcEEEEEEeC----EEEEEECCc--------------------c--ccceeeEEEC
Confidence            34578889999999999999998 6699999999    998875210                    0  0000127999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      +||+++||+|++|++.|.+++++++++++...
T Consensus        94 ~Gd~i~ip~g~~H~~~n~~~~~~~~l~i~~~~  125 (148)
T 2oa2_A           94 DDYAILIPAGTWHNVRNTGNRPLKLYSIYAPP  125 (148)
T ss_dssp             TTCEEEECTTCEEEEEECSSSCEEEEEEEESC
T ss_pred             CCCEEEECCCCcEEEEECCCCCEEEEEEECCC
Confidence            99999999999999999999999988876543

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.03  E-value=2.4e-09  Score=94.69  Aligned_cols=77  Identities=16%  Similarity=0.239  Sum_probs=68.0

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee-eeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI-RRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~-~~l~  142 (436)
                      ..++.+.++++.||+...+|+|+..|++||++|    ++.+.+  .                          .+. ..|+
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G----~~~~~~--~--------------------------~~~~~~l~   92 (147)
T 2f4p_A           45 VFNTQVYDVVFEPGARTHWHSHPGGQILIVTRG----KGFYQE--R--------------------------GKPARILK   92 (147)
T ss_dssp             SSSCEEEEEEECTTCEECSEECTTCEEEEEEEE----EEEEEE--T--------------------------TSCCEEEE
T ss_pred             CCcEEEEEEEECCCCccCceECCCceEEEEEeC----EEEEEE--C--------------------------CEEEEEEC
Confidence            346899999999999999999999999999999    998874  1                          234 7999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      +||++++|+|.+|++.|.+++++.+++++.
T Consensus        93 ~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~  122 (147)
T 2f4p_A           93 KGDVVEIPPNVVHWHGAAPDEELVHIGIST  122 (147)
T ss_dssp             TTCEEEECTTCCEEEEEBTTBCEEEEEEEC
T ss_pred             CCCEEEECCCCcEEeEeCCCCCEEEEEEEc
Confidence            999999999999999999999998888765

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=1.9e-09  Score=91.62  Aligned_cols=82  Identities=16%  Similarity=0.163  Sum_probs=68.6

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+.++.|.||+-..+|||+...|+.||++|++.+.+-+  |..   ..|++||+++||.|.+|.. |.+++++.++++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~--~~~---~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v  112 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGN--GIV---THLKAGDIAIAKPGQVHGAMNSGPEPFIFVSV  112 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECST--TCE---EEEETTEEEEECTTCCCEEEECSSSCEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECC--CeE---EEeCCCCEEEECCCCEEEeEeCCCCCEEEEEE
Confidence            6788899999999999999998899999999999987522  332   3499999999999999987 778899999999


Q ss_pred             EecCCCCc
Q 046186          412 KTNDNAMI  419 (436)
Q Consensus       412 ~~s~~p~~  419 (436)
                      .+..++..
T Consensus       113 ~~p~~~~~  120 (125)
T 3h8u_A          113 VAPGNAGF  120 (125)
T ss_dssp             EESTTCCC
T ss_pred             ECCCcccc
Confidence            87665543

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.02  E-value=4.5e-09  Score=91.13  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ...+.+.++++.||+...+|+|+ ..|++||++|    ++.+.+                            ..+.+.|+
T Consensus        54 ~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G----~~~~~i----------------------------~~~~~~l~  101 (133)
T 1o4t_A           54 NKARLFARMKLPPGSSVGLHKHEGEFEIYYILLG----EGVFHD----------------------------NGKDVPIK  101 (133)
T ss_dssp             TSEEEEEEEEECTTCEEEEEECCSEEEEEEEEES----EEEEEE----------------------------TTEEEEEE
T ss_pred             CceEEEEEEEECCCCccCceECCCccEEEEEEeC----EEEEEE----------------------------CCEEEEeC
Confidence            45578889999999999999998 6999999999    988874                            13468999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      +||++++|+|.+|++.|.++++++++++.
T Consensus       102 ~Gd~i~i~~~~~H~~~n~~~~~~~~l~v~  130 (133)
T 1o4t_A          102 AGDVCFTDSGESHSIENTGNTDLEFLAVI  130 (133)
T ss_dssp             TTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             CCcEEEECCCCcEEeEECCCCCEEEEEEE
Confidence            99999999999999999999999888764

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.01  E-value=2.9e-09  Score=93.93  Aligned_cols=84  Identities=11%  Similarity=0.052  Sum_probs=70.9

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++++..+.+.||+...+|||+...|+.||++|++.+.+-+..+...+...|.+||+++||+|.+|.. |.+++.+.++.+
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i  121 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSI  121 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEE
Confidence            6788899999999999999998889999999999999866432223446699999999999999987 777889999988


Q ss_pred             EecCC
Q 046186          412 KTNDN  416 (436)
Q Consensus       412 ~~s~~  416 (436)
                      +....
T Consensus       122 ~~~~~  126 (148)
T 2oa2_A          122 YAPPQ  126 (148)
T ss_dssp             EESCC
T ss_pred             ECCCC
Confidence            76654

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.99  E-value=2.5e-09  Score=96.37  Aligned_cols=99  Identities=16%  Similarity=0.096  Sum_probs=78.0

Q ss_pred             ceeecCCcEEEEeCCCCccccccceEEEEEEecCCcee-cCeeecC-CceEEEEecccceEEEEEeeCCCCCCcccCCCC
Q 046186           43 NRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLL-LPQFSNS-PQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQ  120 (436)
Q Consensus        43 ~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~-~Ph~h~a-~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~  120 (436)
                      .....+.|.....-.  +......+.+..++|.||+.. .+|||+. .|++||++|    ++.+.+              
T Consensus        21 p~~~~~~G~~~~~l~--~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G----~~~~~~--------------   80 (163)
T 3i7d_A           21 RLNAAMDGRSSLRLG--DAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEG----ALVLVD--------------   80 (163)
T ss_dssp             GGGGGGTTEEEEEHH--HHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEES----CEEEEE--------------
T ss_pred             CccccCCCeEEEEcc--cCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEEC----EEEEEE--------------
Confidence            334455676543321  223445789999999999965 7999995 799999999    888875              


Q ss_pred             CCCCccCCcccccccceeeeeccCcEEEeCCC--CeEEEeccCCCcEEEEEEEecCC
Q 046186          121 GGFGESAGRSQQDSHQKIRRFRQGDIFALPAG--VAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       121 ~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG--~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                                    ..+.+.|++||+++||+|  ++|++.|.++++++++++.....
T Consensus        81 --------------~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~~  123 (163)
T 3i7d_A           81 --------------DQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRTP  123 (163)
T ss_dssp             --------------TTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECCS
T ss_pred             --------------CCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCCC
Confidence                          124689999999999999  99999999999999998877554

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.99  E-value=1.6e-09  Score=92.95  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=67.9

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..++.+.++++.||+...+|+|+..|++||++|    ++.+.+                            ..+...|++
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G----~~~~~i----------------------------~~~~~~l~~   92 (126)
T 1vj2_A           45 APNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKG----KLTVLK----------------------------EQGEETVEE   92 (126)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCSSCEEEEEEES----EEEEEC----------------------------SSCEEEEET
T ss_pred             CCCEEEEEEEECCCCcCCceeCCCcEEEEEEEe----EEEEEE----------------------------CCEEEEECC
Confidence            457899999999999999999999999999999    888874                            123689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      ||++++|+|.+|++.|.+++++.+++++.
T Consensus        93 Gd~i~ip~g~~H~~~~~~~~~~~~l~v~~  121 (126)
T 1vj2_A           93 GFYIFVEPNEIHGFRNDTDSEVEFLCLIP  121 (126)
T ss_dssp             TEEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             CCEEEECCCCcEEeEeCCCCCEEEEEEEc
Confidence            99999999999999999998898887654

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.96  E-value=3.8e-09  Score=89.94  Aligned_cols=75  Identities=12%  Similarity=0.127  Sum_probs=66.2

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ..+.+...++.||....+|||+..|++||++|    ++.+.+                            ..+...|++|
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H~~~Ei~~v~~G----~~~~~i----------------------------~~~~~~l~~G   79 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSHNEYELFIVIQG----NAIIRI----------------------------NDEDFPVTKG   79 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCCSSEEEEEEEES----EEEEEE----------------------------TTEEEEEETT
T ss_pred             CCcEEEEEEECCCCccCCEecCCeEEEEEEeC----EEEEEE----------------------------CCEEEEECCC
Confidence            45788899999999999999999999999999    998875                            1347899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      |+++||+|.+|.+.|.+++++.++++.
T Consensus        80 d~~~i~~~~~H~~~~~~~~~~~~~~i~  106 (128)
T 4i4a_A           80 DLIIIPLDSEHHVINNNQEDFHFYTIW  106 (128)
T ss_dssp             CEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             cEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            999999999999999998888877653

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.95  E-value=4.1e-09  Score=89.77  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             cccccceEEEEEEecCCceec-CeeecCCceE-EEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee
Q 046186           61 QFQCAGVAVVRHTIRQKGLLL-PQFSNSPQLV-YILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI  138 (436)
Q Consensus        61 ~l~~~gv~~~r~~i~pg~l~~-Ph~h~a~ei~-yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~  138 (436)
                      .+...++.+...++.||+... ||||+..+++ ||++|    ++.+.+                            ..+.
T Consensus        20 ~~~~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G----~~~~~i----------------------------~~~~   67 (125)
T 3cew_A           20 SLALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSG----KGFITI----------------------------DGEK   67 (125)
T ss_dssp             HHTCSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEE----EEEEEE----------------------------TTEE
T ss_pred             ccCCCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeC----EEEEEE----------------------------CCEE
Confidence            445667889999999999887 8999966545 59999    988875                            1346


Q ss_pred             eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          139 RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       139 ~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      ..|++||+++||+|.+|++.|.+++++.++++.....
T Consensus        68 ~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i~~~~~  104 (125)
T 3cew_A           68 IELQAGDWLRIAPDGKRQISAASDSPIGFLCIQVKAG  104 (125)
T ss_dssp             EEEETTEEEEECTTCCEEEEEBTTBCEEEEEEEEETT
T ss_pred             EEeCCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCc
Confidence            8999999999999999999999988888887655433

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.95  E-value=3.4e-09  Score=97.22  Aligned_cols=81  Identities=7%  Similarity=-0.002  Sum_probs=67.3

Q ss_pred             cccceEEEEEEecCCceec---CeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceee
Q 046186           63 QCAGVAVVRHTIRQKGLLL---PQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIR  139 (436)
Q Consensus        63 ~~~gv~~~r~~i~pg~l~~---Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~  139 (436)
                      ....+.+.++++.||+...   +|+|+..|++||++|    ++.+.+=..+                        ..+.+
T Consensus       113 ~~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G----~~~~~~~~~~------------------------~~~~~  164 (198)
T 2bnm_A          113 RAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEG----EIHMKWGDKE------------------------NPKEA  164 (198)
T ss_dssp             TSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEES----CEEEEESCTT------------------------SCEEE
T ss_pred             CCCcceEEEEEEcCCCCCcccccccCCCeEEEEEEee----eEEEEECCcC------------------------CcccE
Confidence            3457899999999999876   699999999999999    8888751100                        01468


Q ss_pred             eeccCcEEEeCCCCeEEEecc-CCCcEEEEEEE
Q 046186          140 RFRQGDIFALPAGVAHWCYNE-GSTPVVAVVLL  171 (436)
Q Consensus       140 ~l~~GDv~~iPaG~~h~~~N~-g~e~l~~v~~~  171 (436)
                      .|++||.++||++++|++.|. +++++++++++
T Consensus       165 ~l~~GD~~~~~~~~~H~~~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          165 LLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVN  197 (198)
T ss_dssp             EECTTCEEEECTTCCEEEEESTTSCCEEEEEEE
T ss_pred             EECCCCEEEeCCCCceEEEecCCCCCeEEEEEe
Confidence            999999999999999999999 99999888764

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=98.92  E-value=9.1e-09  Score=83.24  Aligned_cols=76  Identities=12%  Similarity=0.099  Sum_probs=65.5

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+..+.+.||+...+|||+...|+.||++|++.+.+-   + .  ...|++||+++||.|-+|.. +.+++++.++.+
T Consensus        27 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~---~-~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v  100 (105)
T 1v70_A           27 RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG---E-E--EALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET---T-E--EEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC---C-E--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            688899999999999999999888999999999999862   2 2  34599999999999999987 556788999888


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      .+.
T Consensus       101 ~~p  103 (105)
T 1v70_A          101 TAP  103 (105)
T ss_dssp             EES
T ss_pred             eCC
Confidence            754

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.92  E-value=1e-08  Score=99.70  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             cceEEEEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           65 AGVAVVRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..+.+..+++.||+...+ |+|+..|++||++|    ++.+.+                            ..+.+.|++
T Consensus       180 ~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G----~~~~~i----------------------------~~~~~~l~~  227 (274)
T 1sef_A          180 FDMNMHILSFEPGASHAYIETHVQEHGAYLISG----QGMYNL----------------------------DNEWYPVEK  227 (274)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCSCCEEEEEEEC----EEEEEE----------------------------TTEEEEEET
T ss_pred             CCEEEEEEEECCCCccCcceeccCeEEEEEEeC----EEEEEE----------------------------CCEEEEECC
Confidence            478899999999998888 99999999999999    999875                            134789999


Q ss_pred             CcEEEeCCCCeEEEeccCC-CcEEEEEEEec
Q 046186          144 GDIFALPAGVAHWCYNEGS-TPVVAVVLLDV  173 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~-e~l~~v~~~d~  173 (436)
                      ||+++||+|.+|++.|.++ ++++++++.|.
T Consensus       228 GD~i~i~~~~~H~~~n~~~~~~~~~l~~~~~  258 (274)
T 1sef_A          228 GDYIFMSAYVPQAAYAVGREEPLMYVYSKDA  258 (274)
T ss_dssp             TCEEEECTTCCEEEEEECSSSCEEEEEEEEC
T ss_pred             CCEEEECCCCCEEEEeCCCCCCEEEEEEEcC
Confidence            9999999999999999999 99998887664

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.92  E-value=5.9e-09  Score=96.35  Aligned_cols=83  Identities=14%  Similarity=0.216  Sum_probs=68.7

Q ss_pred             cceEEEEEEecCCce------ecCeeec---CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccc
Q 046186           65 AGVAVVRHTIRQKGL------LLPQFSN---SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSH  135 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l------~~Ph~h~---a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~  135 (436)
                      .++.+..++|.||+.      ..+|||+   ..|++||++|    ++.+.+-...                       ..
T Consensus        65 ~~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G----~~~~~i~~~~-----------------------g~  117 (190)
T 1x82_A           65 GDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKG----KGGMLLQTPE-----------------------GD  117 (190)
T ss_dssp             TCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEES----CEEEEEECTT-----------------------CC
T ss_pred             CCeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcC----EEEEEEcCcC-----------------------Cc
Confidence            468888889999998      7899997   3799999999    9998864210                       01


Q ss_pred             ceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          136 QKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       136 ~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      .....|++||+++||+|.+|++.|.+++++++++++...
T Consensus       118 ~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~  156 (190)
T 1x82_A          118 AKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD  156 (190)
T ss_dssp             EEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence            224899999999999999999999999999999887653

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.91  E-value=1.2e-08  Score=94.37  Aligned_cols=83  Identities=16%  Similarity=0.242  Sum_probs=71.7

Q ss_pred             cceEEEEEecCCce------ecccccC--CCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCC
Q 046186          333 QLSAERGLLHRNAM------MVPHWNL--NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGG  403 (436)
Q Consensus       333 ~ls~~~v~L~~gam------~~PHwh~--~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~  403 (436)
                      ++.+..+.|.||+.      ..+|||+  +..|+.||++|++.+.+-+..|+ .+...|++||+++||.+.+|.. |.++
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~-~~~~~l~~GD~v~ip~g~~H~~~N~g~  144 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGD-AKWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCC-EEEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCc-EEEEEECCCcEEEECCCCeEEEEECCc
Confidence            67777889999998      7899998  45899999999999999886665 3566799999999999999987 8888


Q ss_pred             CcEEEEEEEecCC
Q 046186          404 AEFEWISFKTNDN  416 (436)
Q Consensus       404 e~~~~l~f~~s~~  416 (436)
                      +++.++++...+.
T Consensus       145 ~~~~~l~v~~~~~  157 (190)
T 1x82_A          145 EPFIFLAIYPADA  157 (190)
T ss_dssp             SCEEEEEEEETTC
T ss_pred             ccEEEEEEECCCc
Confidence            9999999887653

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.91  E-value=3.4e-09  Score=96.93  Aligned_cols=80  Identities=19%  Similarity=0.128  Sum_probs=70.4

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .|..+.+++|.||+-..+|.|...|++||++|    +..+.+=                           ..+.+.|++|
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~~eE~~~VLeG----el~l~ld---------------------------~ge~~~L~~G  125 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTNSIDYGIVLEG----EIELELD---------------------------DGAKRTVRQG  125 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCSEEEEEEEEES----CEEEECG---------------------------GGCEEEECTT
T ss_pred             CCeEEEEEEECCCCCCCCeecCceEEEEEEeC----EEEEEEC---------------------------CCeEEEECCC
Confidence            47899999999999999999999999999999    8888641                           1236899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCCC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVANN  176 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~  176 (436)
                      |++ +|+|.+|.+.|.+++++++++++....+
T Consensus       126 Dsi-~~~g~~H~~~N~g~~~ar~l~V~~P~~p  156 (172)
T 3es1_A          126 GII-VQRGTNHLWRNTTDKPCRIAFILIEAPA  156 (172)
T ss_dssp             CEE-EECSCCBEEECCSSSCEEEEEEEEECCC
T ss_pred             CEE-EeCCCcEEEEeCCCCCEEEEEEEcCCCc
Confidence            999 9999999999999999999998886654

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.90  E-value=7.5e-09  Score=86.47  Aligned_cols=74  Identities=14%  Similarity=0.113  Sum_probs=63.8

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      ++.+.++++.||+...+|+|+..|++||++|    ++.+.+  .                          .+...|++||
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G----~~~~~~--~--------------------------~~~~~l~~Gd   80 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHRHSQVSYVVEG----EFHVNV--D--------------------------GVIKVLTAGD   80 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCSSEEEEEEEEE----CEEEEE--T--------------------------TEEEEECTTC
T ss_pred             ceEEEEEEECCCCcCCcEECCcceEEEEEee----EEEEEE--C--------------------------CEEEEeCCCC
Confidence            4889999999999999999999999999999    888774  1                          2468999999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      ++++|+|.+|.+.|.+  ++.++.++..
T Consensus        81 ~~~ip~~~~H~~~~~~--~~~~l~v~~p  106 (116)
T 2pfw_A           81 SFFVPPHVDHGAVCPT--GGILIDTFSP  106 (116)
T ss_dssp             EEEECTTCCEEEEESS--CEEEEEEEES
T ss_pred             EEEECcCCceeeEeCC--CcEEEEEECC
Confidence            9999999999999987  5666766653

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.89  E-value=7.4e-09  Score=86.38  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..++.+.++++.||....+|+|+..+++||++|    ++.+.+                            ..+...|++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G----~~~~~~----------------------------~~~~~~l~~   84 (115)
T 1yhf_A           37 RQDLGITVFSLDKGQEIGRHSSPGDAMVTILSG----LAEITI----------------------------DQETYRVAE   84 (115)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSEEEEEEEES----EEEEEE----------------------------TTEEEEEET
T ss_pred             CCceEEEEEEECCCCccCCEECCCcEEEEEEeC----EEEEEE----------------------------CCEEEEECC
Confidence            346788999999999999999999999999999    988864                            124689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      ||++++|+|.+|++.|.++  +.++++
T Consensus        85 Gd~~~ip~~~~H~~~~~~~--~~~~~v  109 (115)
T 1yhf_A           85 GQTIVMPAGIPHALYAVEA--FQMLLV  109 (115)
T ss_dssp             TCEEEECTTSCEEEEESSC--EEEEEE
T ss_pred             CCEEEECCCCCEEEEECCC--ceEEEE
Confidence            9999999999999999874  444444

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.89  E-value=1.3e-08  Score=98.01  Aligned_cols=80  Identities=13%  Similarity=0.040  Sum_probs=67.4

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ...+.+.++++.||+...+|||. ..|++||++|    ++.+.+                            ..+.+.|+
T Consensus       176 ~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G----~~~~~i----------------------------~~~~~~l~  223 (261)
T 1rc6_A          176 GFDMNMHILSFAPGASHGYIETHVQEHGAYILSG----QGVYNL----------------------------DNNWIPVK  223 (261)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEES----EEEEES----------------------------SSCEEEEE
T ss_pred             CCceEEEEEEECCCCccCcccCCCceEEEEEEEe----EEEEEE----------------------------CCEEEEeC
Confidence            34688999999999999999997 7899999999    998874                            13468999


Q ss_pred             cCcEEEeCCCCeEEEeccCC-CcEEEEEEEecCC
Q 046186          143 QGDIFALPAGVAHWCYNEGS-TPVVAVVLLDVAN  175 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~-e~l~~v~~~d~~n  175 (436)
                      +||++++|+|.+|++.|.|+ ++++++++.|++-
T Consensus       224 ~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~d~~r  257 (261)
T 1rc6_A          224 KGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNR  257 (261)
T ss_dssp             TTCEEEECSSEEEEEEEC----CEEEEEEEECSC
T ss_pred             CCCEEEECCCCcEEeEeCCCCcCEEEEEEecCCC
Confidence            99999999999999999999 9999998888543

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=98.89  E-value=6.1e-09  Score=92.89  Aligned_cols=79  Identities=10%  Similarity=0.112  Sum_probs=68.5

Q ss_pred             cceEEEEEecCCc-eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCC-CEEEE-EeCCCcEEEE
Q 046186          333 QLSAERGLLHRNA-MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQN-FAVVK-RAGGAEFEWI  409 (436)
Q Consensus       333 ~ls~~~v~L~~ga-m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g-~~h~~-~ag~e~~~~l  409 (436)
                      ++++..+.|.||+ ...+|||+...|+.||++|++.+.+=   + .  ...|++||+++||.+ .+|.. |.+++++.++
T Consensus        45 ~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~---~-~--~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l  118 (162)
T 3l2h_A           45 HMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME---N-D--QYPIAPGDFVGFPCHAAAHSISNDGTETLVCL  118 (162)
T ss_dssp             SEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET---T-E--EEEECTTCEEEECTTSCCEEEECCSSSCEEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC---C-E--EEEeCCCCEEEECCCCceEEeEeCCCCCEEEE
Confidence            7889999999999 59999999999999999999999852   2 2  245999999999998 99987 7788999999


Q ss_pred             EEEecCCC
Q 046186          410 SFKTNDNA  417 (436)
Q Consensus       410 ~f~~s~~p  417 (436)
                      .+.+...+
T Consensus       119 ~v~~p~~~  126 (162)
T 3l2h_A          119 VIGQRLDQ  126 (162)
T ss_dssp             EEEECCSE
T ss_pred             EEECCCCC
Confidence            99877654

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.86  E-value=8.5e-09  Score=94.36  Aligned_cols=77  Identities=10%  Similarity=0.078  Sum_probs=65.4

Q ss_pred             ccceEEEEEEecCCceec--CeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           64 CAGVAVVRHTIRQKGLLL--PQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~--Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      ...+.+..+++.||+...  +|+|+..|++||++|    ++.+.+                            ..+.+.|
T Consensus       101 ~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G----~~~~~~----------------------------~~~~~~l  148 (192)
T 1y9q_A          101 DTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEG----IMKVFF----------------------------DEQWHEL  148 (192)
T ss_dssp             TTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEES----CEEEEE----------------------------TTEEEEE
T ss_pred             CCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEe----EEEEEE----------------------------CCEEEEe
Confidence            456889999999999766  677778999999999    888764                            1346899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      ++||+++||+|++|++.|.+++++ +++++..
T Consensus       149 ~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~  179 (192)
T 1y9q_A          149 QQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAY  179 (192)
T ss_dssp             CTTCEEEEECSSSEEEEESSSCEE-EEEEEEC
T ss_pred             CCCCEEEEcCCCCeEeECCCCCcE-EEEEEec
Confidence            999999999999999999999888 7776653

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.85  E-value=2.4e-08  Score=82.22  Aligned_cols=77  Identities=13%  Similarity=0.200  Sum_probs=66.1

Q ss_pred             cceEEEEEecCCceeccc--ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEE
Q 046186          333 QLSAERGLLHRNAMMVPH--WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWI  409 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PH--wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l  409 (436)
                      ++.+..+.+.||+...+|  ||+...|+.||++|++.+.+   ++ .  ...|++||+++||.+.+|.. +.+++++.++
T Consensus        20 ~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~-~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~   93 (113)
T 2gu9_A           20 QVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DG-H--TQALQAGSLIAIERGQAHEIRNTGDTPLKTV   93 (113)
T ss_dssp             TEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TT-E--EEEECTTEEEEECTTCCEEEECCSSSCEEEE
T ss_pred             cEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CC-E--EEEeCCCCEEEECCCCcEEeEcCCCCCEEEE
Confidence            678899999999999988  99888999999999999987   22 2  24599999999999999987 6677889999


Q ss_pred             EEEecC
Q 046186          410 SFKTND  415 (436)
Q Consensus       410 ~f~~s~  415 (436)
                      .+....
T Consensus        94 ~v~~~~   99 (113)
T 2gu9_A           94 NFYHPP   99 (113)
T ss_dssp             EEEESC
T ss_pred             EEECCC
Confidence            887654

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.84  E-value=1.5e-08  Score=87.11  Aligned_cols=75  Identities=15%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             eEEEEEEecCCceecCeeecC-CceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           67 VAVVRHTIRQKGLLLPQFSNS-PQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        67 v~~~r~~i~pg~l~~Ph~h~a-~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      +.+.++.+.|++...+|||+. .|++||++|    ++.+.+-                           ..+...|++||
T Consensus        43 ~~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G----~~~~~~~---------------------------~~~~~~l~~Gd   91 (134)
T 2o8q_A           43 AHVIRAIPGKEAKPTWHTHTVGFQLFYVLRG----WVEFEYE---------------------------DIGAVMLEAGG   91 (134)
T ss_dssp             EEEEEECC-----CCCEEECCSCEEEEEEES----EEEEEET---------------------------TTEEEEEETTC
T ss_pred             EEEEEEecCCCCCCCCEECCCCcEEEEEEeC----EEEEEEC---------------------------CcEEEEecCCC
Confidence            346666667899899999995 999999999    8888751                           11468999999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      +++||+|++|++.|.+++ +.+++++..
T Consensus        92 ~~~ip~g~~H~~~~~~~~-~~~l~~~~p  118 (134)
T 2o8q_A           92 SAFQPPGVRHRELRHSDD-LEVLEIVSP  118 (134)
T ss_dssp             EEECCTTCCEEEEEECTT-CEEEEEESS
T ss_pred             EEEECCCCcEEeEeCCCC-eEEEEEECC
Confidence            999999999999998774 576766653

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.83  E-value=4.7e-08  Score=88.44  Aligned_cols=96  Identities=8%  Similarity=0.029  Sum_probs=75.5

Q ss_pred             CCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC
Q 046186          314 GAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ  393 (436)
Q Consensus       314 ~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~  393 (436)
                      .+...+.+.+.+.+. ...++.+..+.|.||+...+|||+ ..|+.||++|++.+.+=+   .   ...|++||+++||.
T Consensus        37 ~g~~~~~L~~~~~g~-~~~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~~i~~---~---~~~l~~Gd~i~ip~  108 (167)
T 3ibm_A           37 SGARRQTLVGRPAGQ-EAPAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGHAEVVLDD---R---VEPLTPLDCVYIAP  108 (167)
T ss_dssp             CCEEEEEEECTTTTC-CSSSEEEEEEEECTTCBCCCBBCS-SCEEEEEEESEEEEEETT---E---EEEECTTCEEEECT
T ss_pred             CCcEEEEEECCCCCC-CCCcEEEEEEEECCCCCCCCccCC-CcEEEEEEeCEEEEEECC---E---EEEECCCCEEEECC
Confidence            445555555444321 123788899999999999999996 789999999999988632   2   34599999999999


Q ss_pred             CCEEEE-EeC-CCcEEEEEEEecCCC
Q 046186          394 NFAVVK-RAG-GAEFEWISFKTNDNA  417 (436)
Q Consensus       394 g~~h~~-~ag-~e~~~~l~f~~s~~p  417 (436)
                      +.+|.. |.+ ++++.++++...++.
T Consensus       109 ~~~H~~~n~~~~~~~~~l~i~~~~~d  134 (167)
T 3ibm_A          109 HAWHQIHATGANEPLGFLCIVDSDRD  134 (167)
T ss_dssp             TCCEEEEEESSSCCEEEEEEEESSCC
T ss_pred             CCcEEEEeCCCCCCEEEEEEEeCCcC
Confidence            999987 888 889999999877654

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.83  E-value=6.5e-09  Score=99.82  Aligned_cols=82  Identities=12%  Similarity=0.188  Sum_probs=67.9

Q ss_pred             cccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEE-------eCC------CC-eEEEEEecCccEEEEcCCCE
Q 046186          331 WIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVV-------DSY------GR-SVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       331 ~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv-------~~~------G~-~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      ..++++..+.+.||+...||||++..|+.||++|++.+.+-       +..      |+ +++...+++||+++||+|.+
T Consensus        40 ~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~  119 (239)
T 2xlg_A           40 DIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYM  119 (239)
T ss_dssp             TEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEE
T ss_pred             CCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCC
Confidence            34788999999999999999999999999999999999771       211      11 34456799999999999999


Q ss_pred             EEE-EeCCCcEEE-EEEE
Q 046186          397 VVK-RAGGAEFEW-ISFK  412 (436)
Q Consensus       397 h~~-~ag~e~~~~-l~f~  412 (436)
                      |.. |.+++.+.+ +.++
T Consensus       120 H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          120 HGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEECCSSSCEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEEE
Confidence            987 888888888 6665

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.82  E-value=5.9e-09  Score=100.08  Aligned_cols=96  Identities=13%  Similarity=0.088  Sum_probs=67.2

Q ss_pred             ccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      +.++++.++++.||+...||||+ ..|++||++|    ++.+.+-....+.. ..  +..    .++ ..+.......++
T Consensus        40 ~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG----~~~~~v~~~~~~~~-~~--~~~----~~~-~~~~~~~~~~l~  107 (239)
T 2xlg_A           40 DIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEG----GIELFHSTKQYPNM-DE--LPV----VGG-AGRGDLYSIQSE  107 (239)
T ss_dssp             TEEEEEEEEEECTTCSCCSEEESSEEEEEEETTC----CCEEEEEEEECCCT-TS--CCS----TTT-TCCEEEEEEECC
T ss_pred             CCCEEEEEEEECCCCcCCCeECCCccEEEEEEEe----EEEEEEEecccccC-CC--ccc----ccc-cccCceeEEEEC
Confidence            44688999999999999999999 8999999999    88875410000000 00  000    000 000112268999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEE-EEEE
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVA-VVLL  171 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~-v~~~  171 (436)
                      +||++++|+|++|.+.|.+++++++ +.++
T Consensus       108 ~GD~i~iP~g~~H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          108 PKQLIYSPNHYMHGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             TTEEEEECTTEEEEEECCSSSCEEEEEEEE
T ss_pred             CCCEEEECCCCCEEEEeCCCCCEEEEEEEE
Confidence            9999999999999999999998887 5655

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.82  E-value=1.6e-08  Score=96.53  Aligned_cols=78  Identities=9%  Similarity=-0.007  Sum_probs=68.1

Q ss_pred             cceEEEEEEecC-CceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           65 AGVAVVRHTIRQ-KGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        65 ~gv~~~r~~i~p-g~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..+.+..+++.| |+...+|||+..+++||++|    ++.+.+                            ..+...|++
T Consensus       143 ~~~~~~~~~~~p~g~~~~~H~H~~~e~~~Vl~G----~~~~~i----------------------------~~~~~~l~~  190 (243)
T 3h7j_A          143 DWVEIMLAKIPGNGGEMPFHKHRNEQIGICIGG----GYDMTV----------------------------EGCTVEMKF  190 (243)
T ss_dssp             TTEEEEEEEECTTTEEEEEECCSSEEEEEECSS----CEEEEE----------------------------TTEEEEECT
T ss_pred             ceeEEEEEEECCCCCcCCCEeCCCcEEEEEEEC----EEEEEE----------------------------CCEEEEECC
Confidence            346778889999 88899999999999999999    888874                            134688999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      ||++++|+|.+|.+.|.++++++++.++...
T Consensus       191 Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~  221 (243)
T 3h7j_A          191 GTAYFCEPREDHGAINRSEKESKSINIFFPP  221 (243)
T ss_dssp             TCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred             CCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence            9999999999999999999999999888743

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.81  E-value=2e-08  Score=101.48  Aligned_cols=89  Identities=11%  Similarity=0.070  Sum_probs=72.7

Q ss_pred             CCcEEEEeCCC--CccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCc
Q 046186           48 EAGVVETWDPG--HEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGE  125 (436)
Q Consensus        48 e~G~~e~~~~~--~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~  125 (436)
                      +++.+++.++.  .+.+..  +++....|.||++..||||+..+++||++|    +|++.+   +               
T Consensus       249 ~G~~~~~~np~t~~~~~~t--i~~~~~~l~pG~~~~~H~h~~~ev~~v~~G----~g~~~v---~---------------  304 (354)
T 2d40_A          249 DGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVARTTDSTIYHVVEG----SGQVII---G---------------  304 (354)
T ss_dssp             TBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEESSCEEEEEEEE----EEEEEE---T---------------
T ss_pred             CCeEEEEeCCCcCCCCCCc--ceeEEEEECCCCCCCceecCCcEEEEEEeC----eEEEEE---C---------------
Confidence            45567777743  344433  566678999999999999997799999999    999986   1               


Q ss_pred             cCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          126 SAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       126 ~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                                .+..++++||+++||++..|++.|+  ++++++++.|
T Consensus       305 ----------~~~~~~~~GD~~~vP~~~~H~~~n~--e~~~l~~~~d  339 (354)
T 2d40_A          305 ----------NETFSFSAKDIFVVPTWHGVSFQTT--QDSVLFSFSD  339 (354)
T ss_dssp             ----------TEEEEEETTCEEEECTTCCEEEEEE--EEEEEEEEES
T ss_pred             ----------CEEEEEcCCCEEEECCCCeEEEEeC--CCEEEEEEcC
Confidence                      2468999999999999999999994  7788888765

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=98.81  E-value=2.3e-08  Score=89.28  Aligned_cols=100  Identities=6%  Similarity=-0.034  Sum_probs=74.0

Q ss_pred             CCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCC---CeEEEEEecCccEE
Q 046186          313 QGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG---RSVYDGEVRRGQIM  389 (436)
Q Consensus       313 ~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G---~~~~~~~l~~Gdv~  389 (436)
                      ..|.+.+.+.........  ++.+..+.+.||+...+|||+ ..|+.||++|++.+.+-+..+   ...-...|++||++
T Consensus        22 ~~G~~~~~l~~~~~~g~~--~~~~~~~~~~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i   98 (163)
T 1lr5_A           22 IEGLSHITVAGALNHGMK--EVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF   98 (163)
T ss_dssp             CTTEEEEEEECHHHHCCS--SEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred             CCCcceEEEeccccCCCC--cEEEEEEEECCCCcCCCeECC-CCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence            345555544322212233  678889999999999999995 579999999999999866321   01123459999999


Q ss_pred             EEcCCCEEEE-EeC-CCcEEEEEEEecC
Q 046186          390 VVPQNFAVVK-RAG-GAEFEWISFKTND  415 (436)
Q Consensus       390 vVP~g~~h~~-~ag-~e~~~~l~f~~s~  415 (436)
                      +||.|.+|.. |.+ ++++.++.+....
T Consensus        99 ~ip~~~~H~~~n~~~~~~~~~l~i~~~~  126 (163)
T 1lr5_A           99 SIPVNDPHQVWNSDEHEDLQVLVIISRP  126 (163)
T ss_dssp             EECTTCCEEEECCCSSSCEEEEEEEESS
T ss_pred             EECCCCcEEeEeCCCCCCEEEEEEECCC
Confidence            9999999987 777 7899999887654

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.78  E-value=5.8e-08  Score=94.56  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=70.1

Q ss_pred             ccceEEEEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ..++.+.+++++||+.... |.|..++.+||++|    +|.+.+                            ..+.+.|+
T Consensus       183 ~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G----~g~y~l----------------------------~~~~~~V~  230 (266)
T 4e2q_A          183 AYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEG----QGIYRL----------------------------GDNWYPVQ  230 (266)
T ss_dssp             TCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEEC----EEEEEE----------------------------TTEEEEEE
T ss_pred             ccceEEEEEEECCCcCcCCceEcccceEEEEEec----eEEEEE----------------------------CCEEEEec
Confidence            5689999999999999886 77779999999999    999874                            24579999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      +||+++++++.+||++|.|++++..|.-=|++
T Consensus       231 ~GD~i~~~~~~~h~~~n~G~e~~~yl~ykd~n  262 (266)
T 4e2q_A          231 AGDVIWMAPFVPQWYAALGKTRSRYLLYKDVN  262 (266)
T ss_dssp             TTCEEEECTTCCEEEEEESSSCEEEEEEEECS
T ss_pred             CCCEEEECCCCcEEEEeCCCCCEEEEEEcccc
Confidence            99999999999999999999999998766654

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.77  E-value=5.1e-08  Score=87.47  Aligned_cols=80  Identities=8%  Similarity=0.030  Sum_probs=68.5

Q ss_pred             ccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEE
Q 046186          332 IQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWIS  410 (436)
Q Consensus       332 l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~  410 (436)
                      .++.+..+.+.||+...+|||+. .|+.||++|++.+++ +  |+   ...|++||+++||.+.+|.. |.+++++.|++
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~v~v-~--g~---~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~  114 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHAH-VHAVMIHRGHGQCLV-G--ET---ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLC  114 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEEEEEEEE-T--TE---EEEEETTCEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE-C--CE---EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            37888899999999999999985 599999999999985 2  23   34599999999999999987 77889999999


Q ss_pred             EEecCCCC
Q 046186          411 FKTNDNAM  418 (436)
Q Consensus       411 f~~s~~p~  418 (436)
                      +...++..
T Consensus       115 i~~~~~d~  122 (156)
T 3kgz_A          115 VVNAARDR  122 (156)
T ss_dssp             EEESSCCC
T ss_pred             EEeCCCCc
Confidence            99887643

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.76  E-value=4.1e-08  Score=80.76  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             ccceEEEEEEecCCceecCeeecC-Cce-EEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNS-PQL-VYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a-~ei-~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      +.++.+.++++.||....+|+|+. .++ +||++|    ++.+.+=                           ..+...|
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G----~~~~~~~---------------------------~~~~~~l   78 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEG----EGEFVGD---------------------------GDAVIPA   78 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEES----CEEEECG---------------------------GGCEEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeC----EEEEEeC---------------------------CCEEEEE
Confidence            456888999999999999999994 788 899999    8887640                           0246899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      ++||++++|+|.+|++.|.++.  .++.++.
T Consensus        79 ~~Gd~~~ip~~~~H~~~~~~~~--~~l~~~~  107 (110)
T 2q30_A           79 PRGAVLVAPISTPHGVRAVTDM--KVLVTIA  107 (110)
T ss_dssp             CTTEEEEEETTSCEEEEESSSE--EEEEEEE
T ss_pred             CCCCEEEeCCCCcEEEEEcCCc--EEEEEEC
Confidence            9999999999999999998764  4444444

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.76  E-value=3.7e-08  Score=84.45  Aligned_cols=75  Identities=11%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ..+++..+++.||+-...|+ +..|++||++|    ++.+.+  .                          .+...|++|
T Consensus        38 ~~~~~~~~~~~pG~~~~~H~-~~~E~~~Vl~G----~~~~~~--~--------------------------g~~~~l~~G   84 (119)
T 3lwc_A           38 GPITIGYGRYAPGQSLTETM-AVDDVMIVLEG----RLSVST--D--------------------------GETVTAGPG   84 (119)
T ss_dssp             CCCEEEEEEECTTCEEEEEC-SSEEEEEEEEE----EEEEEE--T--------------------------TEEEEECTT
T ss_pred             CCEEEEEEEECCCCCcCccC-CCCEEEEEEeC----EEEEEE--C--------------------------CEEEEECCC
Confidence            46888999999998765554 69999999999    999875  1                          246899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      |+++||+|+.|++.|.+ ++++++++...
T Consensus        85 D~v~ip~g~~H~~~~~~-~~~~~l~v~~P  112 (119)
T 3lwc_A           85 EIVYMPKGETVTIRSHE-EGALTAYVTYP  112 (119)
T ss_dssp             CEEEECTTCEEEEEEEE-EEEEEEEEEEC
T ss_pred             CEEEECCCCEEEEEcCC-CCeEEEEEECC
Confidence            99999999999998875 56777766653

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.75  E-value=3.8e-08  Score=82.23  Aligned_cols=72  Identities=13%  Similarity=0.053  Sum_probs=60.1

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      ++.+..+.+.||.-..+|+|+..+++||++|    ++.+.+                            ..+.+.|++||
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~~~e~~~vl~G----~~~~~i----------------------------~~~~~~l~~Gd   84 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYFGDTLYLILQG----EAVITF----------------------------DDQKIDLVPED   84 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCSSCEEEEEEEE----EEEEEE----------------------------TTEEEEECTTC
T ss_pred             CceEEEEEECCCCccccEECCCCeEEEEEeC----EEEEEE----------------------------CCEEEEecCCC
Confidence            4667778899999999999999999999999    988875                            13468999999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      ++++|+|.+|.+.|.  +++.++++.
T Consensus        85 ~i~i~~~~~H~~~~~--~~~~~~~i~  108 (114)
T 2ozj_A           85 VLMVPAHKIHAIAGK--GRFKMLQIT  108 (114)
T ss_dssp             EEEECTTCCBEEEEE--EEEEEEEEE
T ss_pred             EEEECCCCcEEEEeC--CCcEEEEEE
Confidence            999999999999997  355555543

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.75  E-value=7.9e-08  Score=92.11  Aligned_cols=80  Identities=14%  Similarity=0.112  Sum_probs=70.0

Q ss_pred             ccceEEEEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ..++.+..++|+||+-... |.|...+.+||++|    ++.+.+                            ..+.+.|+
T Consensus       162 ~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG----~~~~~~----------------------------~~~~~~l~  209 (246)
T 1sfn_A          162 AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEG----EGLYKL----------------------------EENYYPVT  209 (246)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEEC----EEEEEE----------------------------TTEEEEEE
T ss_pred             CCCeEEEEEEECCCCccCcccCCCceEEEEEEEC----EEEEEE----------------------------CCEEEEcC
Confidence            4579999999999998886 45669999999999    998874                            24578999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      +||+++++++.+|+++|.|+++++++.+=|++-
T Consensus       210 ~GD~~~~~~~~pH~~~n~g~~~~~yl~~kd~~r  242 (246)
T 1sfn_A          210 AGDIIWMGAHCPQWYGALGRNWSKYLLYKDMNR  242 (246)
T ss_dssp             TTCEEEECTTCCEEEEEESSSCEEEEEEEECSS
T ss_pred             CCCEEEECCCCCEEEEcCCCCCEEEEEEEeccc
Confidence            999999999999999999999999998877654

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.74  E-value=6.8e-08  Score=87.55  Aligned_cols=78  Identities=6%  Similarity=-0.027  Sum_probs=67.0

Q ss_pred             ccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEE
Q 046186          332 IQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWIS  410 (436)
Q Consensus       332 l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~  410 (436)
                      .++.+..+.|.||+...+|||+. .|+.||++|++.+.+   +|+   ...|++||+++||.+.+|.. |.+++++.+++
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~~~v---~g~---~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~  123 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQH-AHGVMILKGRGHAMV---GRA---VSAVAPYDLVTIPGWSWHQFRAPADEALGFLC  123 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEECEEEEE---TTE---EEEECTTCEEEECTTCCEEEECCTTSCEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE---CCE---EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            47888899999999999999986 599999999999876   223   34599999999999999987 77889999999


Q ss_pred             EEecCC
Q 046186          411 FKTNDN  416 (436)
Q Consensus       411 f~~s~~  416 (436)
                      +.....
T Consensus       124 i~~~~~  129 (166)
T 3jzv_A          124 MVNAER  129 (166)
T ss_dssp             EEESSC
T ss_pred             EEccCC
Confidence            987754

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.74  E-value=3.1e-08  Score=90.06  Aligned_cols=74  Identities=14%  Similarity=-0.044  Sum_probs=63.4

Q ss_pred             ceEEEEEEecC-CceecCeee-cCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           66 GVAVVRHTIRQ-KGLLLPQFS-NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        66 gv~~~r~~i~p-g~l~~Ph~h-~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      -+....++|.| |+-..|+.+ .+.+++||++|    +..+.+                            +.+.+.|++
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG----~v~vtl----------------------------~g~~~~L~~  134 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQG----IVEVTV----------------------------CKNKFLSVK  134 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEES----EEEEEE----------------------------TTEEEEEET
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEe----EEEEEE----------------------------CCEEEEEcC
Confidence            47788899999 777777654 49999999999    888875                            235789999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      ||.++||+|.+|.+.|.++++++++++.
T Consensus       135 Gds~~iP~g~~H~~~N~~d~~Arll~Vq  162 (166)
T 2vpv_A          135 GSTFQIPAFNEYAIANRGNDEAKMFFVQ  162 (166)
T ss_dssp             TCEEEECTTCEEEEEECSSSCEEEEEEE
T ss_pred             CCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            9999999999999999999998888753

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.74  E-value=9e-08  Score=81.10  Aligned_cols=76  Identities=12%  Similarity=0.071  Sum_probs=63.5

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      ++.+..+.+.||+...+|||+. .|+.||++|++.+.+   +|.   ...|++||+++||.+.+|...+..+.+.++.++
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v~  112 (126)
T 4e2g_A           40 NLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI---GEE---TRVLRPGMAYTIPGGVRHRARTFEDGCLVLDIF  112 (126)
T ss_dssp             SCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE---TTE---EEEECTTEEEEECTTCCEEEECCTTCEEEEEEE
T ss_pred             CeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE---CCE---EEEeCCCCEEEECCCCcEEeEECCCCEEEEEEE
Confidence            7889999999999999999996 899999999999987   222   245999999999999999984433378888877


Q ss_pred             ecC
Q 046186          413 TND  415 (436)
Q Consensus       413 ~s~  415 (436)
                      +-.
T Consensus       113 ~p~  115 (126)
T 4e2g_A          113 SPP  115 (126)
T ss_dssp             ESC
T ss_pred             CCC
Confidence            643

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.73  E-value=1e-08  Score=84.88  Aligned_cols=77  Identities=9%  Similarity=0.053  Sum_probs=65.5

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      .+-+.++.+.||+-...|+|+...++.||++|+++++.  .+|.. ....+.+||+++||+|..|.+ |.|+++|+|+.+
T Consensus        16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~-~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~IeV   92 (98)
T 3lag_A           16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTR-SLAQLKTGRSYARKAGVQHDVRNESTAEIVFLEI   92 (98)
T ss_dssp             SEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCE-ECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEEE
T ss_pred             eEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCce-EEEEecCCcEEEEcCCCcEECEECCCCeEEEEEE
Confidence            56778899999999999999999999999999998764  44443 344589999999999999998 999999999987


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      -
T Consensus        93 E   93 (98)
T 3lag_A           93 E   93 (98)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.71  E-value=5.2e-08  Score=87.66  Aligned_cols=97  Identities=11%  Similarity=0.069  Sum_probs=76.2

Q ss_pred             cCCCeEEEEeCCCCCCccccccceEEEEEecCCcee-cccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEE
Q 046186          312 TQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMM-VPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMV  390 (436)
Q Consensus       312 ~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~-~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~v  390 (436)
                      .+..|..+..-+.. ...+  .+.+..+.|.||+-. .+|||+...|+.||++|++.+.+=+   +   ...|++||+++
T Consensus        24 ~~~~G~~~~~l~~~-~~~~--~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~---~---~~~l~~GD~i~   94 (163)
T 3i7d_A           24 AAMDGRSSLRLGDA-GGLS--QFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ---G---EHPMVPGDCAA   94 (163)
T ss_dssp             GGGTTEEEEEHHHH-TTCC--SEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT---E---EEEECTTCEEE
T ss_pred             ccCCCeEEEEcccC-CCCC--eEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC---E---EEEeCCCCEEE
Confidence            34556665553322 2233  788999999999965 7999998899999999999998632   2   34599999999


Q ss_pred             EcCC--CEEEE-EeCCCcEEEEEEEecCCC
Q 046186          391 VPQN--FAVVK-RAGGAEFEWISFKTNDNA  417 (436)
Q Consensus       391 VP~g--~~h~~-~ag~e~~~~l~f~~s~~p  417 (436)
                      ||.+  .+|.. |.+++.+.++.+.+....
T Consensus        95 ip~~~~~~H~~~n~~~~~~~~l~v~~p~~~  124 (163)
T 3i7d_A           95 FPAGDPNGHQFVNRTDAPATFLVVGTRTPT  124 (163)
T ss_dssp             ECTTCCCCBEEECCSSSCEEEEEEEECCSC
T ss_pred             ECCCCCcceEEEECCCCCEEEEEEECCCCC
Confidence            9999  99987 778899999999877654

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.71  E-value=2.9e-08  Score=81.10  Aligned_cols=77  Identities=10%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      .+.+..+.|.||+-..+|.|+...|+.||++|++.+++-+  |..  ...|++||.++||.+.+|.. |.++++++++.+
T Consensus        17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~--g~~--~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPE--GSV--TSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETT--EEE--EEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCC--CCE--EEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            6788899999999999999998878999999999988632  212  24599999999999999987 888889998876


Q ss_pred             Ee
Q 046186          412 KT  413 (436)
Q Consensus       412 ~~  413 (436)
                      ..
T Consensus        93 ~~   94 (97)
T 2fqp_A           93 EI   94 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.70  E-value=1.2e-07  Score=80.51  Aligned_cols=75  Identities=12%  Similarity=0.274  Sum_probs=63.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      .+++..+.+.||....+||| +..|+.||++|++.+.+   +|+   ...+++||+++||.|-+|.. +.++++++++++
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H-~~~Ei~~v~~G~~~~~i---~~~---~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i  105 (128)
T 4i4a_A           33 PFGGAWCIVRPETKSFRHSH-NEYELFIVIQGNAIIRI---NDE---DFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI  105 (128)
T ss_dssp             SSEEEEEEECTTEECCCBCC-SSEEEEEEEESEEEEEE---TTE---EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             CcEEEEEEECCCCccCCEec-CCeEEEEEEeCEEEEEE---CCE---EEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            67888999999999999999 68899999999999987   223   24599999999999999987 666788888876


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      .-+
T Consensus       106 ~f~  108 (128)
T 4i4a_A          106 WWD  108 (128)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            644

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.70  E-value=5.4e-08  Score=82.09  Aligned_cols=78  Identities=18%  Similarity=0.186  Sum_probs=60.2

Q ss_pred             ccccceEEEEEEecCCceecC---eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee
Q 046186           62 FQCAGVAVVRHTIRQKGLLLP---QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI  138 (436)
Q Consensus        62 l~~~gv~~~r~~i~pg~l~~P---h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~  138 (436)
                      +.+.++.+.++. .+|....+   |.|+..|++||++|    ++.+.+=                            .+.
T Consensus        26 ~~~~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G----~~~l~~~----------------------------~~~   72 (112)
T 2opk_A           26 LERKGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSG----SAGIECE----------------------------GDT   72 (112)
T ss_dssp             EEETTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEES----CEEEEET----------------------------TCS
T ss_pred             ecCCCEEEEEEE-eCCccCCCCccccCCccEEEEEEeC----eEEEEEC----------------------------CEE
Confidence            445678888776 44555555   55669999999999    9988751                            123


Q ss_pred             --eeeccCcEEEeCCCCeEEEeccCCC-cEEEEEEEe
Q 046186          139 --RRFRQGDIFALPAGVAHWCYNEGST-PVVAVVLLD  172 (436)
Q Consensus       139 --~~l~~GDv~~iPaG~~h~~~N~g~e-~l~~v~~~d  172 (436)
                        ..|++||.++||+|.+|.+.|.+++ ++++++++-
T Consensus        73 ~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~~  109 (112)
T 2opk_A           73 APRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVHC  109 (112)
T ss_dssp             SCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             EEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEE
Confidence              7999999999999999999999875 677777664

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.70  E-value=2.3e-07  Score=80.28  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=63.2

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      .+.+..+.+.||+...+|||+...|+.||++|++.+.+=   + .  ...|++||+++||.+.+|.. |.+++++.++.+
T Consensus        56 ~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~---~-~--~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v  129 (133)
T 1o4t_A           56 ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN---G-K--DVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  129 (133)
T ss_dssp             EEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET---T-E--EEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             eEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEEC---C-E--EEEeCCCcEEEECCCCcEEeEECCCCCEEEEEE
Confidence            567788999999999999998888999999999999862   2 2  34599999999999999987 677788988876


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      .
T Consensus       130 ~  130 (133)
T 1o4t_A          130 I  130 (133)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.69  E-value=8.3e-08  Score=80.50  Aligned_cols=77  Identities=17%  Similarity=0.265  Sum_probs=63.2

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+..+.+.||+...+|||+ ..|+.||++|++.+.+   ++.. + ..|++||+++||.|.+|.. +.+++++.++.+
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i---~~~~-~-~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i   99 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTL---EDQE-P-HNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   99 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEE---TTSC-C-EEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCCEeCC-CcEEEEEEeCEEEEEE---CCEE-E-EEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            567788999999999999995 6799999999999987   2233 2 1499999999999999987 566788999888


Q ss_pred             EecC
Q 046186          412 KTND  415 (436)
Q Consensus       412 ~~s~  415 (436)
                      ....
T Consensus       100 ~~~~  103 (117)
T 2b8m_A          100 KAPH  103 (117)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            5443

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.69  E-value=6.2e-08  Score=94.68  Aligned_cols=81  Identities=17%  Similarity=0.196  Sum_probs=71.4

Q ss_pred             ccceEEEEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           64 CAGVAVVRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      ..++.+..++|+||+-... |.|...+.+||++|    +|.+.+                            ..+.+.|+
T Consensus       188 ~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G----~~~~~~----------------------------~~~~~~v~  235 (278)
T 1sq4_A          188 RHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEG----KAVYRL----------------------------NQDWVEVE  235 (278)
T ss_dssp             TCSEEEEEEEECSSSEESCCCCCSEEEEEEEEEC----EEEEEE----------------------------TTEEEEEE
T ss_pred             CCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeC----EEEEEE----------------------------CCEEEEeC
Confidence            4579999999999998886 56668899999999    998874                            24579999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCC
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANN  176 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~  176 (436)
                      +||++++++|.+|+++|.|+++++++.+.|++-.
T Consensus       236 ~GD~~~~~~~~~h~~~n~g~~~~~yl~~~d~nr~  269 (278)
T 1sq4_A          236 AGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRH  269 (278)
T ss_dssp             TTCEEEEEESCCEEEECCSSSCEEEEEEEECSSC
T ss_pred             CCCEEEECCCCCEEEEcCCCCCEEEEEEEEcCCC
Confidence            9999999999999999999999999999998754

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.68  E-value=1.7e-07  Score=78.19  Aligned_cols=76  Identities=18%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      ++.+..+.+.||+...+|||+ ..|+.||++|++.+.+   +|+   ...|.+||+++||.+.+|...+.. ++.++.++
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~l~v~  104 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFHVNV---DGV---IKVLTAGDSFFVPPHVDHGAVCPT-GGILIDTF  104 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCS-SEEEEEEEEECEEEEE---TTE---EEEECTTCEEEECTTCCEEEEESS-CEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECC-cceEEEEEeeEEEEEE---CCE---EEEeCCCCEEEECcCCceeeEeCC-CcEEEEEE
Confidence            578889999999999999998 7899999999999987   233   345999999999999999884433 67788777


Q ss_pred             ecCC
Q 046186          413 TNDN  416 (436)
Q Consensus       413 ~s~~  416 (436)
                      ...+
T Consensus       105 ~p~~  108 (116)
T 2pfw_A          105 SPAR  108 (116)
T ss_dssp             ESCC
T ss_pred             CCch
Confidence            5543

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.67  E-value=1.7e-07  Score=80.33  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+++..+.+.||+-  .|||....|+.||++|++++++   +|.. +  +|++||+++||+|.+|..++..+.+.++...
T Consensus        39 ~~~~~~~~~~pG~~--~~~H~~~~E~~~Vl~G~~~~~~---~g~~-~--~l~~GD~v~ip~g~~H~~~~~~~~~~~l~v~  110 (119)
T 3lwc_A           39 PITIGYGRYAPGQS--LTETMAVDDVMIVLEGRLSVST---DGET-V--TAGPGEIVYMPKGETVTIRSHEEGALTAYVT  110 (119)
T ss_dssp             CCEEEEEEECTTCE--EEEECSSEEEEEEEEEEEEEEE---TTEE-E--EECTTCEEEECTTCEEEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCC--cCccCCCCEEEEEEeCEEEEEE---CCEE-E--EECCCCEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            78999999999975  5788888999999999999998   3433 3  4999999999999999986554667766655


Q ss_pred             e
Q 046186          413 T  413 (436)
Q Consensus       413 ~  413 (436)
                      +
T Consensus       111 ~  111 (119)
T 3lwc_A          111 Y  111 (119)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.66  E-value=5.8e-08  Score=83.95  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEE-EeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQV-VDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWIS  410 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~v-v~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~  410 (436)
                      ++++..+.+.||+...+|||+.. |++||++|++.+.+ ++  | .  ...|++||+++||+|.+|.. +.+++.+.++.
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~-e~~~vl~G~~~~~~~~~--~-~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~  111 (145)
T 3ht1_A           38 RFVLTEFEVSPNGSTPPHFHEWE-HEIYVLEGSMGLVLPDQ--G-R--TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLV  111 (145)
T ss_dssp             SEEEEEEEEEEEEECCCEECSSC-EEEEEEEECEEEEEGGG--T-E--EEEECTTCEEEECTTCCBEEECCTTCCEEEEE
T ss_pred             cEEEEEEEECCCCcCCCccCCCc-eEEEEEEeEEEEEEeEC--C-E--EEEECCCCEEEECCCCeEEeEcCCCCCEEEEE
Confidence            68888999999999999999855 67899999999884 22  2 2  34599999999999999987 66778899999


Q ss_pred             EEecCCCC
Q 046186          411 FKTNDNAM  418 (436)
Q Consensus       411 f~~s~~p~  418 (436)
                      +.....+.
T Consensus       112 i~~~~~~~  119 (145)
T 3ht1_A          112 VAPCERPP  119 (145)
T ss_dssp             EEESCCCC
T ss_pred             EECCCCCC
Confidence            88777653

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.66  E-value=2e-07  Score=79.22  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=63.9

Q ss_pred             cceEEEEEecCCceec-ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEE
Q 046186          333 QLSAERGLLHRNAMMV-PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWIS  410 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~-PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~  410 (436)
                      ++.+..+.+.||+... ||||+...++.||++|++.+.+=   ++   ...|++||+++||.+.+|.. +.+++++.++.
T Consensus        25 ~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~---~~---~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~   98 (125)
T 3cew_A           25 GAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID---GE---KIELQAGDWLRIAPDGKRQISAASDSPIGFLC   98 (125)
T ss_dssp             SCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET---TE---EEEEETTEEEEECTTCCEEEEEBTTBCEEEEE
T ss_pred             CcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC---CE---EEEeCCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence            6778889999999888 89997665566699999998862   22   24599999999999999987 66678899988


Q ss_pred             EEecCCC
Q 046186          411 FKTNDNA  417 (436)
Q Consensus       411 f~~s~~p  417 (436)
                      +......
T Consensus        99 i~~~~~~  105 (125)
T 3cew_A           99 IQVKAGS  105 (125)
T ss_dssp             EEEETTC
T ss_pred             EEcCCcc
Confidence            7766543

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.66  E-value=1.6e-07  Score=96.27  Aligned_cols=89  Identities=13%  Similarity=0.085  Sum_probs=72.3

Q ss_pred             EEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccc
Q 046186           52 VETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQ  131 (436)
Q Consensus        52 ~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~  131 (436)
                      +++.++....-....+.+...+|.||+...+|.|...+++||++|    +|.+.+                         
T Consensus       279 l~l~nP~~g~~~~~tl~~~~~~l~PG~~~~~HrH~~~~v~~VleG----~G~~~V-------------------------  329 (394)
T 3bu7_A          279 LRYTNPQTGGHPMLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKG----QGYSIV-------------------------  329 (394)
T ss_dssp             EEECCTTTSSCSSSSCEEEEEEECTTCBCCCEEESSCEEEEEEEC----CEEEEE-------------------------
T ss_pred             EEEeCCCCCCCCCCeeeEEEEEECCCCcCCCcccCCcEEEEEEeC----eEEEEE-------------------------
Confidence            444454432111345788999999999999999998899999999    997764                         


Q ss_pred             ccccceeeeeccCcEEEeCCCCeEEEeccC-CCcEEEEEEEe
Q 046186          132 QDSHQKIRRFRQGDIFALPAGVAHWCYNEG-STPVVAVVLLD  172 (436)
Q Consensus       132 ~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d  172 (436)
                         ..+...+++||+|++|+|..|.+.|.| +++++++++.|
T Consensus       330 ---~ge~~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i~D  368 (394)
T 3bu7_A          330 ---GGKRFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFND  368 (394)
T ss_dssp             ---TTEEEEECTTCEEEECTTCCEEEEECCSSCCEEEEEEES
T ss_pred             ---CCEEEEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEeeC
Confidence               134689999999999999999999998 79999998766

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.66  E-value=7.6e-08  Score=82.34  Aligned_cols=76  Identities=12%  Similarity=0.106  Sum_probs=64.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+..+.+.||+...+|||+ ..|+.||++|++++.+=   ++.   ..|++||+++||.|-+|.. +.+++++.++.+
T Consensus        47 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i~---~~~---~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~v  119 (126)
T 1vj2_A           47 NFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLKE---QGE---ETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL  119 (126)
T ss_dssp             SEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEECS---SCE---EEEETTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CEEEEEEEECCCCcCCceeCC-CcEEEEEEEeEEEEEEC---CEE---EEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            788899999999999999998 67999999999998862   232   3599999999999999987 667788999888


Q ss_pred             EecC
Q 046186          412 KTND  415 (436)
Q Consensus       412 ~~s~  415 (436)
                      ....
T Consensus       120 ~~~~  123 (126)
T 1vj2_A          120 IPKE  123 (126)
T ss_dssp             EEGG
T ss_pred             EccC
Confidence            7553

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.62  E-value=1.1e-07  Score=89.89  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      +..+.+..+++.||+...+|+|+..+++||++|    ++.+.+                            ..+.+.|++
T Consensus       150 ~~~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G----~~~~~i----------------------------~g~~~~l~~  197 (227)
T 3rns_A          150 KPNLVMTIMSFWKGESLDPHKAPGDALVTVLDG----EGKYYV----------------------------DGKPFIVKK  197 (227)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSEEEEEEEEE----EEEEEE----------------------------TTEEEEEET
T ss_pred             CCCeEEEEEEECCCCccCCEECCCcEEEEEEeE----EEEEEE----------------------------CCEEEEECC
Confidence            446889999999999999999999999999999    998874                            134689999


Q ss_pred             CcEEEeCCCCeEEEec-cCCCcE
Q 046186          144 GDIFALPAGVAHWCYN-EGSTPV  165 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N-~g~e~l  165 (436)
                      ||.+++|+|++|++.| .++-.+
T Consensus       198 Gd~i~ip~~~~H~~~~~~~~~~~  220 (227)
T 3rns_A          198 GESAVLPANIPHAVEAETENFKM  220 (227)
T ss_dssp             TEEEEECTTSCEEEECCSSCEEE
T ss_pred             CCEEEECCCCcEEEEeCCCCEEE
Confidence            9999999999999999 544333

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.61  E-value=2.5e-07  Score=91.32  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             EEEEEecC-CceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186           69 VVRHTIRQ-KGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI  146 (436)
Q Consensus        69 ~~r~~i~p-g~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv  146 (436)
                      ...+++.| |....+|||+ ..|++||++|    ++.+.+                            ..+.+.|++||+
T Consensus       219 ~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G----~~~~~i----------------------------~~~~~~l~~GD~  266 (337)
T 1y3t_A          219 IVVSSEGPKGDRIVDHYHEYHTETFYCLEG----QMTMWT----------------------------DGQEIQLNPGDF  266 (337)
T ss_dssp             EEEEEEECSCCCCCCEECSSCEEEEEEEES----CEEEEE----------------------------TTEEEEECTTCE
T ss_pred             EEEEEEcCCCCCCCCcCCCCCcEEEEEEeC----EEEEEE----------------------------CCEEEEECCCCE
Confidence            44566767 5567889999 8999999999    998875                            124689999999


Q ss_pred             EEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          147 FALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       147 ~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      ++||+|.+|++.|.++ ++.+++++...
T Consensus       267 ~~ip~~~~H~~~n~~~-~~~~l~v~~~~  293 (337)
T 1y3t_A          267 LHVPANTVHSYRLDSH-YTKMVGVLVPG  293 (337)
T ss_dssp             EEECTTCCEEEEECSS-SEEEEEEEESS
T ss_pred             EEECCCCeEEEEECCC-CeEEEEEEcCc
Confidence            9999999999999988 88888887643

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.60  E-value=3.1e-07  Score=81.02  Aligned_cols=77  Identities=17%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+..+.+.||+...+|||+. .|+.||++|++.+++=   +...  ..|++||+++||.+-+|.. +.+++.+.++++
T Consensus        47 ~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~~---~~~~--~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v  120 (147)
T 2f4p_A           47 NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQER---GKPA--RILKKGDVVEIPPNVVHWHGAAPDEELVHIGI  120 (147)
T ss_dssp             SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEET---TSCC--EEEETTCEEEECTTCCEEEEEBTTBCEEEEEE
T ss_pred             cEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEEC---CEEE--EEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            7889999999999999999987 7999999999999852   2321  3499999999999999987 667789999998


Q ss_pred             EecC
Q 046186          412 KTND  415 (436)
Q Consensus       412 ~~s~  415 (436)
                      ....
T Consensus       121 ~~~~  124 (147)
T 2f4p_A          121 STQV  124 (147)
T ss_dssp             ECCG
T ss_pred             EccC
Confidence            8664

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.59  E-value=2.7e-07  Score=84.46  Aligned_cols=79  Identities=13%  Similarity=0.091  Sum_probs=64.2

Q ss_pred             cccceEEEEEecCCceec---ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-Ee-CCCc
Q 046186          331 WIQLSAERGLLHRNAMMV---PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RA-GGAE  405 (436)
Q Consensus       331 ~l~ls~~~v~L~~gam~~---PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~a-g~e~  405 (436)
                      .-.+.+..+.+.||+...   +|||+. .|+.||++|++.+.+=+..+..  ...|++||.++||.+.+|.. |. ++++
T Consensus       114 ~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~~~~~~--~~~l~~GD~~~~~~~~~H~~~n~~~~~~  190 (198)
T 2bnm_A          114 APSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVEEHVPHAFTAAKGTGS  190 (198)
T ss_dssp             STTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEECTTCCEEEEESTTSCC
T ss_pred             CCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECCcCCcc--cEEECCCCEEEeCCCCceEEEecCCCCC
Confidence            347889999999999887   689976 7999999999999973311113  34599999999999999987 77 7788


Q ss_pred             EEEEEEE
Q 046186          406 FEWISFK  412 (436)
Q Consensus       406 ~~~l~f~  412 (436)
                      +.++.+.
T Consensus       191 ~~~l~v~  197 (198)
T 2bnm_A          191 AKLIAVN  197 (198)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9988875

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.59  E-value=4.7e-07  Score=75.26  Aligned_cols=75  Identities=16%  Similarity=0.190  Sum_probs=60.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      ++.+..+.+.||+-..+|||+ ..|+.||++|++.+.+   +|+.   ..+.+||+++||.|-+|...+.. ++.++.+.
T Consensus        39 ~~~~~~~~~~~g~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~v~  110 (115)
T 1yhf_A           39 DLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQET---YRVAEGQTIVMPAGIPHALYAVE-AFQMLLVV  110 (115)
T ss_dssp             TEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TTEE---EEEETTCEEEECTTSCEEEEESS-CEEEEEEE
T ss_pred             ceEEEEEEECCCCccCCEECC-CcEEEEEEeCEEEEEE---CCEE---EEECCCCEEEECCCCCEEEEECC-CceEEEEE
Confidence            678889999999999999998 5799999999999985   2332   45999999999999999884433 57777665


Q ss_pred             ecC
Q 046186          413 TND  415 (436)
Q Consensus       413 ~s~  415 (436)
                      ..+
T Consensus       111 ~~~  113 (115)
T 1yhf_A          111 VKP  113 (115)
T ss_dssp             ECS
T ss_pred             Ecc
Confidence            543

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.58  E-value=2.2e-07  Score=79.79  Aligned_cols=75  Identities=13%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             EEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEec
Q 046186          336 AERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTN  414 (436)
Q Consensus       336 ~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s  414 (436)
                      +.++.+.||+...+|||+...|+.||++|++++.+-+  + ..  ..|++||+++||+|.+|.. +.++ .+.+++++..
T Consensus        45 ~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~--~-~~--~~l~~Gd~~~ip~g~~H~~~~~~~-~~~~l~~~~p  118 (134)
T 2o8q_A           45 VIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYED--I-GA--VMLEAGGSAFQPPGVRHRELRHSD-DLEVLEIVSP  118 (134)
T ss_dssp             EEEECC-----CCCEEECCSCEEEEEEESEEEEEETT--T-EE--EEEETTCEEECCTTCCEEEEEECT-TCEEEEEESS
T ss_pred             EEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEECC--c-EE--EEecCCCEEEECCCCcEEeEeCCC-CeEEEEEECC
Confidence            4444555899999999998899999999999998732  1 32  4599999999999999988 5465 5688877655


Q ss_pred             CC
Q 046186          415 DN  416 (436)
Q Consensus       415 ~~  416 (436)
                      ..
T Consensus       119 ~~  120 (134)
T 2o8q_A          119 AG  120 (134)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.57  E-value=1.8e-07  Score=81.74  Aligned_cols=73  Identities=15%  Similarity=0.097  Sum_probs=59.2

Q ss_pred             ceEEEEEEecCCceecCeee-cCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFS-NSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h-~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .+.+..++++||   ..||| +..|++||++|    ++.+.+                            ..+.+.|++|
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG----~~~l~~----------------------------~g~~~~l~~G  100 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEG----ELHVRH----------------------------EGETMIAKAG  100 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEE----EEEEEE----------------------------TTEEEEEETT
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEEC----EEEEEE----------------------------CCEEEEECCC
Confidence            688899999999   34566 48999999999    988875                            1346799999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      |+++||+|.+|.+.|.  +++++++++....
T Consensus       101 D~i~~p~g~~h~~~~~--~~~~~l~v~~p~~  129 (133)
T 2pyt_A          101 DVMFIPKGSSIEFGTP--TSVRFLYVAWPAN  129 (133)
T ss_dssp             CEEEECTTCEEEEEEE--EEEEEEEEEESTT
T ss_pred             cEEEECCCCEEEEEeC--CCEEEEEEEcCCc
Confidence            9999999999999874  5788888775443

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.56  E-value=3.2e-07  Score=86.44  Aligned_cols=92  Identities=15%  Similarity=0.043  Sum_probs=76.0

Q ss_pred             cCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCcc
Q 046186           47 CEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES  126 (436)
Q Consensus        47 se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~  126 (436)
                      ...|..++..++-+ +....+.+.++.|.||...+.|.|+.+|++||++|    ++.+.+-                   
T Consensus       113 ~~~a~~elvGP~g~-~~s~~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG----~~e~~v~-------------------  168 (217)
T 4b29_A          113 NRFGWFELAGPSGH-FLTQSLRVTVGYWGPGLDYGWHEHLPEELYSVVSG----RALFHLR-------------------  168 (217)
T ss_dssp             HHEEEEEEEETTSS-EECSSCEEEEEEECSSCEEEEEECSSEEEEEEEEE----CEEEEET-------------------
T ss_pred             hCceEEEEECCCCC-CCCCeEEEEEEEECCCCcCCCCCCCCceEEEEEeC----CEEEEEC-------------------
Confidence            34566777776654 44567999999999999999999999999999999    8787651                   


Q ss_pred             CCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       127 ~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                              ..+...+++||++++|+|++|++. ++++++.++++.
T Consensus       169 --------~g~~~~l~pGd~v~ipsgv~Ha~r-t~dePllalwvW  204 (217)
T 4b29_A          169 --------NAPDLMLEPGQTRFHPANAPHAMT-TLTDPILTLVLW  204 (217)
T ss_dssp             --------TSCCEEECTTCEEEECTTCCEEEE-CCSSCEEEEEEE
T ss_pred             --------CCCEEecCCCCEEEcCCCCceeEE-ECCccEEEEEEE
Confidence                    134689999999999999999997 588999877765

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.55  E-value=2.3e-07  Score=78.31  Aligned_cols=71  Identities=15%  Similarity=0.161  Sum_probs=57.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      ++.+.++.+.||+-..+|||+. .|+.||++|++.+++=   ++   ...|++||+++||.+-+|...+. ++..++..
T Consensus        35 ~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i~---~~---~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~~~  105 (114)
T 3fjs_A           35 RLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGVD---GA---QRRLHQGDLLYLGAGAAHDVNAI-TNTSLLVT  105 (114)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEET---TE---EEEECTTEEEEECTTCCEEEEES-SSEEEEEE
T ss_pred             CEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEEC---CE---EEEECCCCEEEECCCCcEEEEeC-CCcEEEEE
Confidence            7889999999999999999986 5999999999999862   23   34599999999999999998544 33444333

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.50  E-value=1.7e-07  Score=77.44  Aligned_cols=70  Identities=10%  Similarity=0.082  Sum_probs=52.8

Q ss_pred             EEEEEEecCCceecCeeecC-CceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186           68 AVVRHTIRQKGLLLPQFSNS-PQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI  146 (436)
Q Consensus        68 ~~~r~~i~pg~l~~Ph~h~a-~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv  146 (436)
                      ...++.+.||.. .+|+|+. .|++||++|    ++.+.+-                           ..+...|++||+
T Consensus        29 ~~~~~~~~~g~~-~~H~H~~~~E~~~Vl~G----~~~~~~~---------------------------~~~~~~l~~Gd~   76 (107)
T 2i45_A           29 FQFHLVKLLGDY-GWHTHGYSDKVLFAVEG----DMAVDFA---------------------------DGGSMTIREGEM   76 (107)
T ss_dssp             EEEEEEEEEEEC-CCBCC--CCEEEEESSS----CEEEEET---------------------------TSCEEEECTTEE
T ss_pred             CEEEEEECCCCC-cceeCCCCCEEEEEEeC----EEEEEEC---------------------------CCcEEEECCCCE
Confidence            345567778874 5999995 999999999    8888751                           114689999999


Q ss_pred             EEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          147 FALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       147 ~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      +++|+|++|++.|.  +++.++. ++
T Consensus        77 ~~ip~~~~H~~~~~--~~~~~l~-i~   99 (107)
T 2i45_A           77 AVVPKSVSHRPRSE--NGCSLVL-IE   99 (107)
T ss_dssp             EEECTTCCEEEEEE--EEEEEEE-EE
T ss_pred             EEECCCCcEeeEeC--CCeEEEE-EE
Confidence            99999999999995  3455554 44

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=98.49  E-value=1.1e-05  Score=77.35  Aligned_cols=60  Identities=18%  Similarity=0.085  Sum_probs=44.4

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK  399 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~  399 (436)
                      .+++..-..+||.-+.  |+-..+|+.||++|++.++  +.+|+.   .++++||+++||+|+.-.-
T Consensus       166 ~~~~GiW~~tpG~~~~--~~~~~~E~~~ILeG~v~lt--~~~G~~---~~~~aGD~~~~P~G~~~tW  225 (238)
T 3myx_A          166 TLRIGVWDSTPYERIS--RPHKIHELMNLIEGRVVLS--LENGSS---LTVNTGDTVFVAQGAPCKW  225 (238)
T ss_dssp             SCEEEEEEECCEEBCC--EECSSCEEEEEEECCEEEE--ETTSCE---EEECTTCEEEECTTCEEEE
T ss_pred             CEEEeEEEeCCCEEEC--CcCCCCEEEEEEEeEEEEE--eCCCCE---EEECCCCEEEECCCCEEEE
Confidence            4667777778877322  2225789999999998887  445664   3499999999999998544

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.48  E-value=3.7e-07  Score=73.89  Aligned_cols=57  Identities=11%  Similarity=0.200  Sum_probs=47.0

Q ss_pred             ceecCeeecC-CceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEE
Q 046186           78 GLLLPQFSNS-PQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHW  156 (436)
Q Consensus        78 ~l~~Ph~h~a-~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~  156 (436)
                      +...+|||+. .|++||++|    ++.+.+-                            .+...|++||+++||+|.+|.
T Consensus        40 ~~~~~H~H~~~~e~~~v~~G----~~~~~~~----------------------------~~~~~l~~Gd~~~ip~~~~H~   87 (102)
T 3d82_A           40 GEFVWHEHADTDEVFIVMEG----TLQIAFR----------------------------DQNITLQAGEMYVIPKGVEHK   87 (102)
T ss_dssp             EECCCBCCTTCCEEEEEEES----EEEEECS----------------------------SCEEEEETTEEEEECTTCCBE
T ss_pred             CCCCceeCCCCcEEEEEEeC----EEEEEEC----------------------------CEEEEEcCCCEEEECCCCeEe
Confidence            5688999995 999999999    8888641                            236899999999999999999


Q ss_pred             EeccCCCcEEEE
Q 046186          157 CYNEGSTPVVAV  168 (436)
Q Consensus       157 ~~N~g~e~l~~v  168 (436)
                      +.|.+  +..++
T Consensus        88 ~~~~~--~~~~l   97 (102)
T 3d82_A           88 PMAKE--ECKIM   97 (102)
T ss_dssp             EEEEE--EEEEE
T ss_pred             eEcCC--CCEEE
Confidence            99974  44444

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.46  E-value=1e-06  Score=72.27  Aligned_cols=75  Identities=11%  Similarity=0.044  Sum_probs=59.4

Q ss_pred             cceEEEEEecCCceecccccCCCcEE-EEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSI-MYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei-~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      ++.+..+.+.||....+|||+...|+ .||++|++.+.+=+  |..   ..|.+||+++||++-+|...+.. +..++.+
T Consensus        32 ~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~--~~~---~~l~~Gd~~~ip~~~~H~~~~~~-~~~~l~~  105 (110)
T 2q30_A           32 NFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG--DAV---IPAPRGAVLVAPISTPHGVRAVT-DMKVLVT  105 (110)
T ss_dssp             SCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG--GCE---EEECTTEEEEEETTSCEEEEESS-SEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC--CEE---EEECCCCEEEeCCCCcEEEEEcC-CcEEEEE
Confidence            67888999999999999999876788 89999999987621  232   35999999999999999874433 3566665


Q ss_pred             Ee
Q 046186          412 KT  413 (436)
Q Consensus       412 ~~  413 (436)
                      ++
T Consensus       106 ~~  107 (110)
T 2q30_A          106 IA  107 (110)
T ss_dssp             EE
T ss_pred             EC
Confidence            53

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.44  E-value=1.1e-06  Score=79.14  Aligned_cols=89  Identities=12%  Similarity=0.122  Sum_probs=65.6

Q ss_pred             eecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEe--cccceEEEEEeeCCCCCCcccCCCCC
Q 046186           45 VECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQ--AYTYRRGSHGDPFPGYPETYQSPQQG  121 (436)
Q Consensus        45 ~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~--G~~~~~g~~g~v~pg~~et~~~~~~~  121 (436)
                      .+..+|..+..-...+.+   .+++..+.+  ++-..+|||. ..|++||++  |    ++.+.+               
T Consensus        28 ~~~~~G~srR~l~~~~~f---p~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G----~g~v~i---------------   83 (157)
T 4h7l_A           28 VACPCGWAQRAFGHDAGT---SVSVHYTQI--TKAARTHYHREHQEIYVVLDHAA----HATIEL---------------   83 (157)
T ss_dssp             EEETTEEEEEESCGGGCC---SCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECT----TCEEEE---------------
T ss_pred             ccCCCCeeeEEeEcCCCC---cEEEEEEeC--CCCccceECCCCcEEEEEEecCc----EEEEEE---------------
Confidence            566788876543322221   234444444  4456899998 789999999  9    888875               


Q ss_pred             CCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          122 GFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       122 ~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                                   ..+.+.|++||+++||+|+.|++.+    ++++++++...
T Consensus        84 -------------dge~~~l~~GD~v~IPpg~~H~i~g----~l~~L~I~~Pp  119 (157)
T 4h7l_A           84 -------------NGQSYPLTKLLAISIPPLVRHRIVG----EATIINIVSPP  119 (157)
T ss_dssp             -------------TTEEEECCTTEEEEECTTCCEEEES----CEEEEEEEESS
T ss_pred             -------------CCEEEEeCCCCEEEECCCCeEeeEC----CEEEEEEECCC
Confidence                         1346899999999999999999973    68888887754

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.42  E-value=1.3e-06  Score=78.54  Aligned_cols=93  Identities=11%  Similarity=0.105  Sum_probs=68.7

Q ss_pred             CcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEe--eeEEEEEEeCCCCeEEEEEecCc
Q 046186          309 DIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAIS--GSCHVQVVDSYGRSVYDGEVRRG  386 (436)
Q Consensus       309 d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~--G~grv~vv~~~G~~~~~~~l~~G  386 (436)
                      +.....+|+.+.+-..+    ....+++..+.+  ++-..+|||+...|+.||++  |++.+++   +|+.   ..|++|
T Consensus        26 ~~~~~~~G~srR~l~~~----~~fp~sv~~v~~--g~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dge~---~~l~~G   93 (157)
T 4h7l_A           26 EAVACPCGWAQRAFGHD----AGTSVSVHYTQI--TKAARTHYHREHQEIYVVLDHAAHATIEL---NGQS---YPLTKL   93 (157)
T ss_dssp             CCEEETTEEEEEESCGG----GCCSCEEEEEEE--CSCCCCBBCSSCEEEEEEEEECTTCEEEE---TTEE---EECCTT
T ss_pred             CCccCCCCeeeEEeEcC----CCCcEEEEEEeC--CCCccceECCCCcEEEEEEecCcEEEEEE---CCEE---EEeCCC
Confidence            34566888887754331    112244555555  44568999999999999999  9999997   3332   359999


Q ss_pred             cEEEEcCCCEEEEEeCCCcEEEEEEEecCC
Q 046186          387 QIMVVPQNFAVVKRAGGAEFEWISFKTNDN  416 (436)
Q Consensus       387 dv~vVP~g~~h~~~ag~e~~~~l~f~~s~~  416 (436)
                      |+++||.|-.|.+. +  .++++++.+-.-
T Consensus        94 D~v~IPpg~~H~i~-g--~l~~L~I~~Pp~  120 (157)
T 4h7l_A           94 LAISIPPLVRHRIV-G--EATIINIVSPPF  120 (157)
T ss_dssp             EEEEECTTCCEEEE-S--CEEEEEEEESSC
T ss_pred             CEEEECCCCeEeeE-C--CEEEEEEECCCC
Confidence            99999999999986 3  799999887653

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.40  E-value=1.4e-06  Score=79.51  Aligned_cols=77  Identities=8%  Similarity=-0.037  Sum_probs=61.0

Q ss_pred             ccceEEEEEecCCceecccccC-CCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEE
Q 046186          332 IQLSAERGLLHRNAMMVPHWNL-NAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWI  409 (436)
Q Consensus       332 l~ls~~~v~L~~gam~~PHwh~-~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l  409 (436)
                      -.+.+..+.+.||+...+|||. ...|+.||++|++.+.+   + ...+  .|++||+++||.+.+|.. |.+++.+ ++
T Consensus       102 ~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~-~~~~--~l~~GD~i~i~~~~~H~~~n~~~~~~-~l  174 (192)
T 1y9q_A          102 TGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---D-EQWH--ELQQGEHIRFFSDQPHGYAAVTEKAV-FQ  174 (192)
T ss_dssp             TTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---T-TEEE--EECTTCEEEEECSSSEEEEESSSCEE-EE
T ss_pred             CcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---C-CEEE--EeCCCCEEEEcCCCCeEeECCCCCcE-EE
Confidence            3688889999999998854443 34799999999999886   2 2333  599999999999999987 7777888 77


Q ss_pred             EEEecC
Q 046186          410 SFKTND  415 (436)
Q Consensus       410 ~f~~s~  415 (436)
                      .+....
T Consensus       175 ~v~~~~  180 (192)
T 1y9q_A          175 NIVAYP  180 (192)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            776553

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.40  E-value=2.1e-06  Score=71.53  Aligned_cols=73  Identities=5%  Similarity=0.103  Sum_probs=57.8

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      ++.+..+.+.+|.-..+|||+ ..|+.||++|++.+.+=   + .  ...|++||+++||.+-+|...+. +++.++.+.
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~-~~e~~~vl~G~~~~~i~---~-~--~~~l~~Gd~i~i~~~~~H~~~~~-~~~~~~~i~  108 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYF-GDTLYLILQGEAVITFD---D-Q--KIDLVPEDVLMVPAHKIHAIAGK-GRFKMLQIT  108 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCS-SCEEEEEEEEEEEEEET---T-E--EEEECTTCEEEECTTCCBEEEEE-EEEEEEEEE
T ss_pred             CceEEEEEECCCCccccEECC-CCeEEEEEeCEEEEEEC---C-E--EEEecCCCEEEECCCCcEEEEeC-CCcEEEEEE
Confidence            456777788999999999997 57999999999998872   2 2  34599999999999999987543 467776654


Q ss_pred             e
Q 046186          413 T  413 (436)
Q Consensus       413 ~  413 (436)
                      .
T Consensus       109 ~  109 (114)
T 2ozj_A          109 L  109 (114)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.40  E-value=1.1e-05  Score=76.41  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=53.5

Q ss_pred             ceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEe
Q 046186          334 LSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKT  413 (436)
Q Consensus       334 ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~  413 (436)
                      -.+..+++.||+.+.+|.| ...|+ +||+|+..    +.+      .++.+|+-+-.|.+..|...+|++++. |-+++
T Consensus       146 E~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~----d~~------~~~~~GsWlR~P~gs~h~~~ag~~g~~-i~~k~  212 (223)
T 3o14_A          146 ETVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVT----VND------EVLGRNAWLRLPEGEALSATAGARGAK-IWMKT  212 (223)
T ss_dssp             CEEEEEEECTTCEEEECCS-SCEEE-EEEEEEEE----ETT------EEECTTEEEEECTTCCEEEEEEEEEEE-EEEEE
T ss_pred             cEEEEEEECCCCccCCCCC-CcEEE-EEEEeEEE----ECC------ceECCCeEEEeCCCCccCcEECCCCeE-EEEEe
Confidence            4567889999999999999 88897 99999954    432      348899999999999999988776665 33444

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.39  E-value=1.4e-06  Score=77.86  Aligned_cols=73  Identities=7%  Similarity=0.016  Sum_probs=57.8

Q ss_pred             ceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .+++...+++ ++-  .|||. ..|+.||++|    ++.+.+  .                          .+...|++|
T Consensus        65 ~~s~g~~~~e-~~~--~~~~~~~eE~~yVLeG----~~~l~i--~--------------------------g~~~~l~~G  109 (151)
T 4axo_A           65 RLGCGMMEMK-ETT--FDWTLNYDEIDYVIDG----TLDIII--D--------------------------GRKVSASSG  109 (151)
T ss_dssp             SCEEEEEEEE-EEE--EEEECSSEEEEEEEEE----EEEEEE--T--------------------------TEEEEEETT
T ss_pred             cEEEEEEEEc-Ccc--ccEeCCCcEEEEEEEe----EEEEEE--C--------------------------CEEEEEcCC
Confidence            5777778887 332  34554 8999999999    988874  1                          246899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      |+++||+|+.|.+.|.  ++++++++....+
T Consensus       110 D~i~iP~G~~h~~~n~--~~a~~l~V~~P~~  138 (151)
T 4axo_A          110 ELIFIPKGSKIQFSVP--DYARFIYVTYPAD  138 (151)
T ss_dssp             CEEEECTTCEEEEEEE--EEEEEEEEEECSC
T ss_pred             CEEEECCCCEEEEEeC--CCEEEEEEECCCC
Confidence            9999999999999997  6788888776544

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.36  E-value=2.1e-06  Score=78.01  Aligned_cols=94  Identities=11%  Similarity=0.077  Sum_probs=65.1

Q ss_pred             cCCCeEEEEeCC---CCCCccccc-----cceEEEEEecC-CceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEE
Q 046186          312 TQGAGHITTLNS---FNLPVLRWI-----QLSAERGLLHR-NAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGE  382 (436)
Q Consensus       312 ~~~~G~~~~~~~---~~~P~L~~l-----~ls~~~v~L~~-gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~  382 (436)
                      ++..|..+.+..   ..|...+.+     -|+...+.|.| |+...||.|..+.|+.||++|++.+++=    ...+  .
T Consensus        58 ~~~~~~t~~v~~~~~~~~~fa~~fs~~~~~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~----g~~~--~  131 (166)
T 2vpv_A           58 APNLSQTEQVKDTKDENFALEIMFDKHKEYFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVC----KNKF--L  131 (166)
T ss_dssp             ---------------CBCCCCEECCTTTCSCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEET----TEEE--E
T ss_pred             CCCCCceEecCCCCCCCEEEEEeecCCcccceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEEC----CEEE--E
Confidence            444444444444   444443322     45666899999 8899999888899999999999999983    2334  5


Q ss_pred             ecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          383 VRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       383 l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      |.+||.++||++.+|.. |.+++.+.++..
T Consensus       132 L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A          132 SVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             EETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             EcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            99999999999999987 888887777654

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.34  E-value=1.5e-06  Score=70.31  Aligned_cols=69  Identities=13%  Similarity=0.226  Sum_probs=51.2

Q ss_pred             eEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          335 SAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       335 s~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+....+.  +...+|||+.+.|+.||++|++.+.+-+   .   ...+.+||+++||+|.+|...+. ++..++.+.
T Consensus        32 ~~~~~~~~--~~~~~H~H~~~~e~~~v~~G~~~~~~~~---~---~~~l~~Gd~~~ip~~~~H~~~~~-~~~~~l~i~  100 (102)
T 3d82_A           32 QFKLVKVE--GEFVWHEHADTDEVFIVMEGTLQIAFRD---Q---NITLQAGEMYVIPKGVEHKPMAK-EECKIMIIE  100 (102)
T ss_dssp             EEEEEEEE--EECCCBCCTTCCEEEEEEESEEEEECSS---C---EEEEETTEEEEECTTCCBEEEEE-EEEEEEEEE
T ss_pred             EEEEEEEC--CCCCceeCCCCcEEEEEEeCEEEEEECC---E---EEEEcCCCEEEECCCCeEeeEcC-CCCEEEEEE
Confidence            33344443  4588999999899999999999987632   3   24599999999999999987443 355665553

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.29  E-value=3.4e-06  Score=84.88  Aligned_cols=80  Identities=14%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             cceEEEEEecCCceec---ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEE
Q 046186          333 QLSAERGLLHRNAMMV---PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEW  408 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~---PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~  408 (436)
                      .+++. ..+.|++-..   ||||++..|+.||++|++.+.+-+.+|.. ....|++||+++||.+.+|.. |.+++. ++
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~-~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~  123 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQ-QTRVLSSGDYGSVPRNVTHTFQIQDPDT-EM  123 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCC-EEEEEETTCEEEECTTEEEEEEECSTTE-EE
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCce-EEEEECCCCEEEECCCCcEEEEeCCCCC-EE
Confidence            45555 4556665554   89999999999999999999988755542 234599999999999999987 766665 78


Q ss_pred             EEEEecC
Q 046186          409 ISFKTND  415 (436)
Q Consensus       409 l~f~~s~  415 (436)
                      +.+.+..
T Consensus       124 l~v~~p~  130 (350)
T 1juh_A          124 TGVIVPG  130 (350)
T ss_dssp             EEEEESS
T ss_pred             EEEEcCc
Confidence            7776554

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.28  E-value=3.5e-06  Score=73.52  Aligned_cols=71  Identities=17%  Similarity=0.284  Sum_probs=58.2

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .|++..+.+.||   ..|||....|+.||++|++.+++   +|+. +  +|++||+++||+|.+|.... .+.+.++...
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~---~g~~-~--~l~~GD~i~~p~g~~h~~~~-~~~~~~l~v~  125 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRH---EGET-M--IAKAGDVMFIPKGSSIEFGT-PTSVRFLYVA  125 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEE---TTEE-E--EEETTCEEEECTTCEEEEEE-EEEEEEEEEE
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEE---CCEE-E--EECCCcEEEECCCCEEEEEe-CCCEEEEEEE
Confidence            688999999999   56899888999999999999987   2443 3  59999999999999988743 4567777765


Q ss_pred             e
Q 046186          413 T  413 (436)
Q Consensus       413 ~  413 (436)
                      .
T Consensus       126 ~  126 (133)
T 2pyt_A          126 W  126 (133)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.28  E-value=5.3e-06  Score=76.93  Aligned_cols=78  Identities=22%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             EEEEEEecCCc----------eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccce
Q 046186           68 AVVRHTIRQKG----------LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQK  137 (436)
Q Consensus        68 ~~~r~~i~pg~----------l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k  137 (436)
                      ....+++.|+.          ...+|+|+..|+.||++|    +|.+.+-..                         ..+
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~~Ei~yVleG----~G~f~i~d~-------------------------~d~  125 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEG----SGYFDVRDK-------------------------EDK  125 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEE----EEEEEEECT-------------------------TSC
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCcceEEEEEec----eEEEEECCC-------------------------CCe
Confidence            55667787775          347899999999999999    999986321                         012


Q ss_pred             --eeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          138 --IRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       138 --~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                        ...+++||+++||+|+.||..+..+..+.++.+|...
T Consensus       126 ~~~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~  164 (191)
T 1vr3_A          126 WIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE  164 (191)
T ss_dssp             EEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred             EEEEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence              3589999999999999999998777788888877643

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.25  E-value=1.4e-06  Score=71.82  Aligned_cols=71  Identities=17%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             EEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEe
Q 046186          336 AERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKT  413 (436)
Q Consensus       336 ~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~  413 (436)
                      ..++.+.+|. ..+|||+...|+.||++|++.+.+-+  |. .  ..|++||+++||+|.+|...+. +++.++.|..
T Consensus        30 ~~~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~~~~~--~~-~--~~l~~Gd~~~ip~~~~H~~~~~-~~~~~l~i~~  100 (107)
T 2i45_A           30 QFHLVKLLGD-YGWHTHGYSDKVLFAVEGDMAVDFAD--GG-S--MTIREGEMAVVPKSVSHRPRSE-NGCSLVLIEL  100 (107)
T ss_dssp             EEEEEEEEEE-CCCBCC--CCEEEEESSSCEEEEETT--SC-E--EEECTTEEEEECTTCCEEEEEE-EEEEEEEEEC
T ss_pred             EEEEEECCCC-CcceeCCCCCEEEEEEeCEEEEEECC--Cc-E--EEECCCCEEEECCCCcEeeEeC-CCeEEEEEEC
Confidence            3445667777 45999998899999999999988633  13 2  3499999999999999987443 4577776653

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.24  E-value=2.5e-06  Score=70.93  Aligned_cols=65  Identities=12%  Similarity=0.056  Sum_probs=50.6

Q ss_pred             EEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEE
Q 046186           69 VVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA  148 (436)
Q Consensus        69 ~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~  148 (436)
                      +....+.||... .| |+..|++||++|    ++.+.+  .                         ..+...|++||+++
T Consensus        33 ~~~~~~~pg~~~-~h-H~~~E~~~Vl~G----~~~~~i--~-------------------------~g~~~~l~~GD~i~   79 (101)
T 1o5u_A           33 WPIWEKEVSEFD-WY-YDTNETCYILEG----KVEVTT--E-------------------------DGKKYVIEKGDLVT   79 (101)
T ss_dssp             SCEEEECSEEEE-EE-CSSCEEEEEEEE----EEEEEE--T-------------------------TCCEEEEETTCEEE
T ss_pred             EEEEEeCCCccc-cc-CCceEEEEEEeC----EEEEEE--C-------------------------CCCEEEECCCCEEE
Confidence            345677887753 34 779999999999    988875  1                         02368999999999


Q ss_pred             eCCCCeEEEeccCCCcEE
Q 046186          149 LPAGVAHWCYNEGSTPVV  166 (436)
Q Consensus       149 iPaG~~h~~~N~g~e~l~  166 (436)
                      ||+|.+|.+.|.++.+..
T Consensus        80 ip~g~~H~~~n~~~~~~~   97 (101)
T 1o5u_A           80 FPKGLRCRWKVLEPVRKH   97 (101)
T ss_dssp             ECTTCEEEEEEEEEEEEE
T ss_pred             ECCCCcEEEEeCCCeeEE
Confidence            999999999997664433

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.24  E-value=2.9e-06  Score=77.44  Aligned_cols=79  Identities=13%  Similarity=0.046  Sum_probs=68.2

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      |..+.++.|.||+-..+|.|+ ..|++||++|++.+.+=+  |+.   ..|++||.+ ||++-+|.. |.+++.+.++.+
T Consensus        78 G~~~~~v~l~PG~~~~~H~H~-~eE~~~VLeGel~l~ld~--ge~---~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V  150 (172)
T 3es1_A           78 GSVIRVVDMLPGKESPMHRTN-SIDYGIVLEGEIELELDD--GAK---RTVRQGGII-VQRGTNHLWRNTTDKPCRIAFI  150 (172)
T ss_dssp             SEEEEEEEECTTCBCCCBCCS-EEEEEEEEESCEEEECGG--GCE---EEECTTCEE-EECSCCBEEECCSSSCEEEEEE
T ss_pred             CeEEEEEEECCCCCCCCeecC-ceEEEEEEeCEEEEEECC--CeE---EEECCCCEE-EeCCCcEEEEeCCCCCEEEEEE
Confidence            889999999999999999995 458899999999998642  232   359999999 999999987 888899999999


Q ss_pred             EecCCCC
Q 046186          412 KTNDNAM  418 (436)
Q Consensus       412 ~~s~~p~  418 (436)
                      .+-+.|.
T Consensus       151 ~~P~~p~  157 (172)
T 3es1_A          151 LIEAPAY  157 (172)
T ss_dssp             EEECCCC
T ss_pred             EcCCCce
Confidence            9888885

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.23  E-value=1e-05  Score=75.05  Aligned_cols=80  Identities=13%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             eEEEEEecCCc----------eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-
Q 046186          335 SAERGLLHRNA----------MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-  403 (436)
Q Consensus       335 s~~~v~L~~ga----------m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-  403 (436)
                      +...+.+.++.          ....|+|+. .|+.||++|+|.+.|-+.++. .+...+++||+++||+|-+|...++. 
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d~-~~~i~v~~GDlIiIPaG~~H~f~~~~~  152 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKEDK-WIRISMEKGDMITLPAGIYHRFTLDEK  152 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTSC-EEEEEEETTEEEEECTTCCEEEEECTT
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCCe-EEEEEECCCCEEEECcCCcCCcccCCC
Confidence            44555566554          347899987 799999999999999885444 35566999999999999999886664 


Q ss_pred             CcEEEEEEEecCC
Q 046186          404 AEFEWISFKTNDN  416 (436)
Q Consensus       404 e~~~~l~f~~s~~  416 (436)
                      ..+..+-+|+++.
T Consensus       153 ~~~~airlF~~~~  165 (191)
T 1vr3_A          153 NYVKAMRLFVGEP  165 (191)
T ss_dssp             CCEEEEEEESSSC
T ss_pred             CCEEEEEEECCCC
Confidence            5688888887764

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.23  E-value=3.1e-06  Score=85.86  Aligned_cols=74  Identities=16%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      .|.+....|.||+...+|-|.. .++.||++|+|...+++  |.+ +  .+++||+++||.|..|.. |.|++++.|+++
T Consensus       102 ~L~a~~~~l~PG~~~~~HrH~~-~ev~~VleG~G~~~~vd--G~~-~--~~~~GD~v~iP~g~~H~~~N~gde~l~~l~v  175 (368)
T 3nw4_A          102 TMWAAIQYLGPRETAPEHRHSQ-NAFRFVVEGEGVWTVVN--GDP-V--RMSRGDLLLTPGWCFHGHMNDTDQPMAWIDG  175 (368)
T ss_dssp             SCEEEEEEECTTCEEEEEEESS-CEEEECSSCEEEEEEET--TEE-E--EEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCccCceeccc-ceEEEEEecceEEEEEC--CEE-E--EEeCCCEEEECCCCcEEeEeCCCCCeEEEEe
Confidence            7899999999999999999975 59999999999656665  443 3  499999999999999988 889999999986


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      .
T Consensus       176 ~  176 (368)
T 3nw4_A          176 L  176 (368)
T ss_dssp             E
T ss_pred             c
Confidence            5

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.16  E-value=2.8e-05  Score=69.49  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=64.0

Q ss_pred             CCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC
Q 046186          314 GAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ  393 (436)
Q Consensus       314 ~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~  393 (436)
                      ...++..+-+.+-.  .  .|++..+.++ ++  ..|||....|+.||++|++.+++   +|+.   ..|++||+++||+
T Consensus        50 ~~v~i~~l~s~~~~--~--~~s~g~~~~e-~~--~~~~~~~~eE~~yVLeG~~~l~i---~g~~---~~l~~GD~i~iP~  116 (151)
T 4axo_A           50 DVVYTKDLFTLEES--P--RLGCGMMEMK-ET--TFDWTLNYDEIDYVIDGTLDIII---DGRK---VSASSGELIFIPK  116 (151)
T ss_dssp             CCEEEEECSCTTTC--S--SCEEEEEEEE-EE--EEEEECSSEEEEEEEEEEEEEEE---TTEE---EEEETTCEEEECT
T ss_pred             CCEEEEEeecCCCC--C--cEEEEEEEEc-Cc--cccEeCCCcEEEEEEEeEEEEEE---CCEE---EEEcCCCEEEECC
Confidence            34455555444321  1  6888888887 33  36799999999999999999996   3443   3499999999999


Q ss_pred             CCEEEEEeCCCcEEEEEEEecC
Q 046186          394 NFAVVKRAGGAEFEWISFKTND  415 (436)
Q Consensus       394 g~~h~~~ag~e~~~~l~f~~s~  415 (436)
                      |.+|...+- +.+.++++.+-+
T Consensus       117 G~~h~~~n~-~~a~~l~V~~P~  137 (151)
T 4axo_A          117 GSKIQFSVP-DYARFIYVTYPA  137 (151)
T ss_dssp             TCEEEEEEE-EEEEEEEEEECS
T ss_pred             CCEEEEEeC-CCEEEEEEECCC
Confidence            999987333 678888876544

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.12  E-value=4.6e-06  Score=71.92  Aligned_cols=68  Identities=13%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ..+.+...++.||... .|+|...|++||++|    ++.+.+  .+                         .+...|++|
T Consensus        47 g~~~~g~w~~~pG~~~-~~~~~~~E~~~Vl~G----~~~l~~--~~-------------------------g~~~~l~~G   94 (123)
T 3bcw_A           47 GKVESGVWESTSGSFQ-SNTTGYIEYCHIIEG----EARLVD--PD-------------------------GTVHAVKAG   94 (123)
T ss_dssp             TTEEEEEEEEEEEEEE-CCCTTEEEEEEEEEE----EEEEEC--TT-------------------------CCEEEEETT
T ss_pred             CCEEEEEEEECCCcee-eEcCCCcEEEEEEEE----EEEEEE--CC-------------------------CeEEEECCC
Confidence            3578888899998765 366656899999999    888874  11                         236899999


Q ss_pred             cEEEeCCCCeEEEeccCCCc
Q 046186          145 DIFALPAGVAHWCYNEGSTP  164 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~  164 (436)
                      |+++||+|.+|.+.|.++.+
T Consensus        95 D~~~ip~g~~h~~~~~~~~r  114 (123)
T 3bcw_A           95 DAFIMPEGYTGRWEVDRHVK  114 (123)
T ss_dssp             CEEEECTTCCCEEEEEEEEE
T ss_pred             CEEEECCCCeEEEEECCcee
Confidence            99999999999999986543

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.12  E-value=6.8e-06  Score=73.99  Aligned_cols=73  Identities=11%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      +..+..+++.||+.+.+|.|+..+.+||++|    +....   .                         +  -..+++||
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G----~~~~~---e-------------------------~--~~~~~~Gd   86 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTGTVIVYTVQG----SWRYK---E-------------------------H--DWVAHAGS   86 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESSCEEEEEEES----CEEET---T-------------------------S--SCCBCTTC
T ss_pred             CeEEEEEEECCCCCcccccCCCCEEEEEEEe----EEEEe---C-------------------------C--CeEECCCe
Confidence            5788899999999999999999999999999    65431   0                         1  13799999


Q ss_pred             EEEeCCCCeEEEecc--CCCcEEEEEEEe
Q 046186          146 IFALPAGVAHWCYNE--GSTPVVAVVLLD  172 (436)
Q Consensus       146 v~~iPaG~~h~~~N~--g~e~l~~v~~~d  172 (436)
                      .++.|+|..|...+.  ++++++++.+.+
T Consensus        87 ~~~~P~g~~H~~~~~~~~~e~~~~~~~~~  115 (159)
T 3ebr_A           87 VVYETASTRHTPQSAYAEGPDIITFNIVA  115 (159)
T ss_dssp             EEEECSSEEECEEESSSSSSCEEEEEEEE
T ss_pred             EEEECCCCcceeEeCCCCCCCEEEEEEec
Confidence            999999999999998  778887776544

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.12  E-value=1.3e-06  Score=80.26  Aligned_cols=63  Identities=16%  Similarity=0.323  Sum_probs=50.8

Q ss_pred             ecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee--eeeccCcEEEeCCCCeEEE
Q 046186           80 LLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI--RRFRQGDIFALPAGVAHWC  157 (436)
Q Consensus        80 ~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~--~~l~~GDv~~iPaG~~h~~  157 (436)
                      ..+|+|+..|+.||++|    +|.+.+. .+                         .+.  ..+++||+++||+|+.||+
T Consensus        93 ~~~H~H~~~Ei~~Vl~G----~g~~~i~-~~-------------------------d~~~~~~l~~GDli~IP~g~~H~~  142 (179)
T 1zrr_A           93 LNEHTHGEDEVRFFVEG----AGLFCLH-IG-------------------------DEVFQVLCEKNDLISVPAHTPHWF  142 (179)
T ss_dssp             HSCBEESSCEEEEEEES----CCCCCEE-CS-------------------------SCEEEEECCCSCEEEECTTCCBCC
T ss_pred             ccceECChheEEEEEcc----eEEEEEE-eC-------------------------CEEEEEEECCCCEEEECCCCeEee
Confidence            57899999999999999    8887653 11                         123  4699999999999999999


Q ss_pred             eccCCCcEEEEEEEe
Q 046186          158 YNEGSTPVVAVVLLD  172 (436)
Q Consensus       158 ~N~g~e~l~~v~~~d  172 (436)
                      .+..+..+.++-+|.
T Consensus       143 ~~~~~~~~~~ir~F~  157 (179)
T 1zrr_A          143 DMGSEPNFTAIRIFD  157 (179)
T ss_dssp             CCSSCSSCEEEEEEC
T ss_pred             ecCCCceEEEEEecc
Confidence            887666777777775

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.06  E-value=1.7e-05  Score=74.71  Aligned_cols=96  Identities=13%  Similarity=0.056  Sum_probs=76.8

Q ss_pred             ccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEE
Q 046186          311 YTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMV  390 (436)
Q Consensus       311 ~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~v  390 (436)
                      |.+++|+.-.+.....=.-+  +|.+..+.|.||.....|-|+ +.|+.||++|.+.+.+-+   ..  ...+.+||+++
T Consensus       111 f~~~~a~~elvGP~g~~~s~--~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~~---g~--~~~l~pGd~v~  182 (217)
T 4b29_A          111 FLNRFGWFELAGPSGHFLTQ--SLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLRN---AP--DLMLEPGQTRF  182 (217)
T ss_dssp             HHHHEEEEEEEETTSSEECS--SCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEETT---SC--CEEECTTCEEE
T ss_pred             HHhCceEEEEECCCCCCCCC--eEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEECC---CC--EEecCCCCEEE
Confidence            45577887777776553344  888899999999999999998 579999999999998853   22  23499999999


Q ss_pred             EcCCCEEEEEeCCCcEEEEEEEec
Q 046186          391 VPQNFAVVKRAGGAEFEWISFKTN  414 (436)
Q Consensus       391 VP~g~~h~~~ag~e~~~~l~f~~s  414 (436)
                      +|.|-+|...++++++..+-..+.
T Consensus       183 ipsgv~Ha~rt~dePllalwvW~G  206 (217)
T 4b29_A          183 HPANAPHAMTTLTDPILTLVLWRG  206 (217)
T ss_dssp             ECTTCCEEEECCSSCEEEEEEEES
T ss_pred             cCCCCceeEEECCccEEEEEEEeC
Confidence            999999999999998865444443

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.04  E-value=1.6e-05  Score=66.75  Aligned_cols=76  Identities=17%  Similarity=0.289  Sum_probs=55.0

Q ss_pred             cceEEEEEecCCceeccc--ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCC-cEEE
Q 046186          333 QLSAERGLLHRNAMMVPH--WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGA-EFEW  408 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PH--wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e-~~~~  408 (436)
                      ++.+.++. .+|....++  +|....|+.||++|++.+++=+   ... ...|++||.++||++.+|.. +.+++ .+.|
T Consensus        30 ~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~---~~~-~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~  104 (112)
T 2opk_A           30 GLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIECEG---DTA-PRVMRPGDWLHVPAHCRHRVAWTDGGEPTVW  104 (112)
T ss_dssp             TEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEETT---CSS-CEEECTTEEEEECTTCCEEEEEECSSSCEEE
T ss_pred             CEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEECC---EEE-EEEECCCCEEEECCCCcEEEEeCCCCCCEEE
Confidence            45555554 445555553  5556789999999999998733   210 13499999999999999987 77764 7888


Q ss_pred             EEEEe
Q 046186          409 ISFKT  413 (436)
Q Consensus       409 l~f~~  413 (436)
                      ++++.
T Consensus       105 l~v~~  109 (112)
T 2opk_A          105 LAVHC  109 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88764

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.03  E-value=1.5e-05  Score=72.28  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      +..+..+.+.||+.+++|.|+..+.+||++|    +...+    +                         .....+++||
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G----~f~~~----~-------------------------~~~~~~~aGd   88 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHTGTVHMYTISG----CWYYT----E-------------------------YPGQKQTAGC   88 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEESSCEEEEEEES----EEEET----T-------------------------CTTSCEETTE
T ss_pred             CcEEEEEEECCCCcCCcccCCCCEEEEEEEE----EEEEC----C-------------------------CceEEECCCe
Confidence            5678899999999999999999999999999    65541    1                         0125789999


Q ss_pred             EEEeCCCCeEEEeccC--CCcEEEEEEEe
Q 046186          146 IFALPAGVAHWCYNEG--STPVVAVVLLD  172 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g--~e~l~~v~~~d  172 (436)
                      .+++|+|..|...+..  +++++++.+.+
T Consensus        89 ~~~~P~g~~H~~~a~~~~~~gci~l~v~~  117 (165)
T 3cjx_A           89 YLYEPGGSIHQFNTPRDNEGQTEVIFMLS  117 (165)
T ss_dssp             EEEECTTCEECEECCTTCSSCEEEEEEEE
T ss_pred             EEEeCCCCceeeEeCCCCCCCcEEEEEEe
Confidence            9999999999999865  33776666555

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.03  E-value=2e-05  Score=78.27  Aligned_cols=77  Identities=10%  Similarity=0.228  Sum_probs=64.7

Q ss_pred             EEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecC-c---cEEEEcCCCEEEE-EeCCCcEEEEE
Q 046186          336 AERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRR-G---QIMVVPQNFAVVK-RAGGAEFEWIS  410 (436)
Q Consensus       336 ~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~-G---dv~vVP~g~~h~~-~ag~e~~~~l~  410 (436)
                      .....+.||.++.-|||.+..|+.||++|++++.+-++.....+.  +.. |   ++++||.|+.|.+ |.|+++++++.
T Consensus       274 ~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~  351 (369)
T 3st7_A          274 VSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIE--YYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIM  351 (369)
T ss_dssp             EEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEE--EEEETTBCCEEEECTTEEEEEEECSSSCEEEEE
T ss_pred             EEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEE--EEecCCcceEEEeCCCceEEeEEcCCCcEEEEE
Confidence            456678999999999999999999999999999998776555555  444 6   9999999999988 88888998887


Q ss_pred             EEec
Q 046186          411 FKTN  414 (436)
Q Consensus       411 f~~s  414 (436)
                      .-+.
T Consensus       352 ~~~~  355 (369)
T 3st7_A          352 WVNE  355 (369)
T ss_dssp             EESS
T ss_pred             ecCc
Confidence            7544

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.02  E-value=1e-05  Score=71.43  Aligned_cols=75  Identities=7%  Similarity=-0.114  Sum_probs=56.4

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      +-.+.+++++||+.+++|.|+..+.+||++|    +.....   +                       .......+++||
T Consensus        43 g~~~~~~~~~pG~~~p~H~H~~~ee~~VL~G----~~~~~~---g-----------------------~~~~~~~~~~Gd   92 (145)
T 2o1q_A           43 GSWTAIFDCPAGSSFAAHVHVGPGEYFLTKG----KMDVRG---G-----------------------KAAGGDTAIAPG   92 (145)
T ss_dssp             TEEEEEEEECTTEEECCEEESSCEEEEEEEE----EEEETT---C-----------------------GGGTSEEEESSE
T ss_pred             ccEEEEEEECCCCCCCccCCCCCEEEEEEEe----EEEEcC---C-----------------------CEecceEeCCCE
Confidence            3467889999999999999998888999999    776431   1                       001126899999


Q ss_pred             EEEeCCCCeEE-EeccCCCcEEEEEEEe
Q 046186          146 IFALPAGVAHW-CYNEGSTPVVAVVLLD  172 (436)
Q Consensus       146 v~~iPaG~~h~-~~N~g~e~l~~v~~~d  172 (436)
                      .+++|+|..|. ..+.  ++.+++.+++
T Consensus        93 ~~~~p~g~~H~p~~~~--e~~~~l~~~~  118 (145)
T 2o1q_A           93 YGYESANARHDKTEFP--VASEFYMSFL  118 (145)
T ss_dssp             EEEECTTCEESCCEEE--EEEEEEEEEE
T ss_pred             EEEECcCCccCCeECC--CCeEEEEEEC
Confidence            99999999998 4433  4455555565

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.96  E-value=4.3e-05  Score=75.89  Aligned_cols=78  Identities=14%  Similarity=0.214  Sum_probs=63.2

Q ss_pred             eEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc-C
Q 046186           67 VAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ-G  144 (436)
Q Consensus        67 v~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~-G  144 (436)
                      ......++.||.....|||. ..+++||++|    ++.+.+=.+.                        ..++..+.. |
T Consensus       272 ~q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G----~~~~~~~~~~------------------------~~~~~~~~~~~  323 (369)
T 3st7_A          272 GQVSVNISKPGITKGNHWHHTKNEKFLVVSG----KGVIRFRHVN------------------------DDEIIEYYVSG  323 (369)
T ss_dssp             CEEEEEEECTTCEEEEEECSSCCEEEEEEES----EEEEEEEETT------------------------CCCCEEEEEET
T ss_pred             ceEEEEEecCCceeccccccCcceEEEEEee----eEEEEEEcCC------------------------CCcEEEEEecC
Confidence            34556788999999999999 8899999999    9888763221                        234567766 7


Q ss_pred             ---cEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          145 ---DIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       145 ---Dv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                         |++.||+|+.|-+.|.|+++++++...+
T Consensus       324 ~~~~~~~ip~g~~h~~~n~~~~~~~~~~~~~  354 (369)
T 3st7_A          324 DKLEVVDIPVGYTHNIENLGDTDMVTIMWVN  354 (369)
T ss_dssp             TBCCEEEECTTEEEEEEECSSSCEEEEEEES
T ss_pred             CcceEEEeCCCceEEeEEcCCCcEEEEEecC
Confidence               9999999999999999988998887544

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.86  E-value=4.8e-05  Score=69.16  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=50.6

Q ss_pred             EecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCC
Q 046186           73 TIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAG  152 (436)
Q Consensus        73 ~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG  152 (436)
                      .-.||+-...|+|+.+|++||++|    +..+.+.+.|                        ..+...|++||+|++|+|
T Consensus        41 v~Gpn~r~d~H~h~~dE~FyvlkG----~m~i~v~d~g------------------------~~~~v~l~eGE~f~lP~g   92 (174)
T 1yfu_A           41 VGGPNHRTDYHDDPLEEFFYQLRG----NAYLNLWVDG------------------------RRERADLKEGDIFLLPPH   92 (174)
T ss_dssp             ECSCBCCCCEEECSSCEEEEEEES----CEEEEEEETT------------------------EEEEEEECTTCEEEECTT
T ss_pred             EcCCCcCccCcCCCCceEEEEEee----EEEEEEEcCC------------------------ceeeEEECCCCEEEeCCC
Confidence            446777789998899999999999    9999876421                        134689999999999999


Q ss_pred             CeEEEeccC
Q 046186          153 VAHWCYNEG  161 (436)
Q Consensus       153 ~~h~~~N~g  161 (436)
                      ++|+-...+
T Consensus        93 vpH~P~r~~  101 (174)
T 1yfu_A           93 VRHSPQRPE  101 (174)
T ss_dssp             CCEEEEBCC
T ss_pred             CCcCccccC
Confidence            999987765

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=97.85  E-value=4.2e-05  Score=63.47  Aligned_cols=64  Identities=11%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             EEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEE
Q 046186          338 RGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWI  409 (436)
Q Consensus       338 ~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l  409 (436)
                      ...+.||..   +||-...|+.||++|++.+.+=  +|..   ..|++||+++||+|.+|.. +.++....|+
T Consensus        35 ~~~~~pg~~---~~hH~~~E~~~Vl~G~~~~~i~--~g~~---~~l~~GD~i~ip~g~~H~~~n~~~~~~~yv   99 (101)
T 1o5u_A           35 IWEKEVSEF---DWYYDTNETCYILEGKVEVTTE--DGKK---YVIEKGDLVTFPKGLRCRWKVLEPVRKHYN   99 (101)
T ss_dssp             EEEECSEEE---EEECSSCEEEEEEEEEEEEEET--TCCE---EEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred             EEEeCCCcc---cccCCceEEEEEEeCEEEEEEC--CCCE---EEECCCCEEEECCCCcEEEEeCCCeeEEEE
Confidence            556777764   2444578999999999999872  1333   3499999999999999987 5444444443

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=97.82  E-value=2.6e-05  Score=68.74  Aligned_cols=78  Identities=9%  Similarity=-0.101  Sum_probs=58.8

Q ss_pred             ceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEe
Q 046186          334 LSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKT  413 (436)
Q Consensus       334 ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~  413 (436)
                      -.+.++++.||+...+|+|+.. |..||++|+....    .|....+..+++||.+++|.|-.|.-....+++.++.+++
T Consensus        44 ~~~~~~~~~pG~~~p~H~H~~~-ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~~e~~~~l~~~~  118 (145)
T 2o1q_A           44 SWTAIFDCPAGSSFAAHVHVGP-GEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSFL  118 (145)
T ss_dssp             EEEEEEEECTTEEECCEEESSC-EEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEEEEEEEEEEEEE
T ss_pred             cEEEEEEECCCCCCCccCCCCC-EEEEEEEeEEEEc----CCCEecceEeCCCEEEEECcCCccCCeECCCCeEEEEEEC
Confidence            3577899999999999999965 5589999999853    3433223568999999999999998434445666666665


Q ss_pred             cCC
Q 046186          414 NDN  416 (436)
Q Consensus       414 s~~  416 (436)
                      -..
T Consensus       119 gp~  121 (145)
T 2o1q_A          119 GPL  121 (145)
T ss_dssp             SCE
T ss_pred             Ccc
Confidence            443

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=97.81  E-value=1.1e-05  Score=74.03  Aligned_cols=67  Identities=13%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-CcEEEEEEEecC
Q 046186          346 MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISFKTND  415 (436)
Q Consensus       346 m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-e~~~~l~f~~s~  415 (436)
                      ...+|+|+. .|+.||++|+|.+.|. .+ ...+...+++||+++||+|-+|...++. ..+..+-+|+++
T Consensus        92 ~~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~-d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~  159 (179)
T 1zrr_A           92 FLNEHTHGE-DEVRFFVEGAGLFCLH-IG-DEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP  159 (179)
T ss_dssp             HHSCBEESS-CEEEEEEESCCCCCEE-CS-SCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred             cccceECCh-heEEEEEcceEEEEEE-eC-CEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence            357899987 7999999999999887 23 3345667999999999999999876554 467778888766

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.80  E-value=8.5e-05  Score=65.25  Aligned_cols=72  Identities=6%  Similarity=0.043  Sum_probs=57.6

Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCC--CCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEec
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSY--GRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN  414 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~--G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s  414 (436)
                      ..+++...|-|.+++|+.||++|+.++.+-+..  +...-.-.|++|+++|||+|-.|.-.|. +...++.+..+
T Consensus        37 ~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~-~e~~vLLiEp~  110 (140)
T 3d0j_A           37 DIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQ-KDTKMMYVQDS  110 (140)
T ss_dssp             BTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEEC-TTCEEEEEEES
T ss_pred             CcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCC-CceEEEEEEeC
Confidence            356888999999999999999999999999631  1112234599999999999999998885 45777777765

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=97.71  E-value=7.8e-05  Score=64.85  Aligned_cols=59  Identities=17%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             ecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEec
Q 046186           80 LLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYN  159 (436)
Q Consensus        80 ~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N  159 (436)
                      ..||.|+.-+++||++|    +|.+.+                            ..+.+.+++||+++||+|.+|...+
T Consensus        31 ~~p~~h~~~~i~~v~~G----~~~~~i----------------------------~~~~~~l~~Gd~~~i~p~~~H~~~~   78 (164)
T 2arc_A           31 DRPLGMKGYILNLTIRG----QGVVKN----------------------------QGREFVCRPGDILLFPPGEIHHYGR   78 (164)
T ss_dssp             EETTCCSSEEEEEEEEE----CEEEEE----------------------------TTEEEEECTTCEEEECTTCCEEEEE
T ss_pred             ccccCCCceEEEEEEEe----EEEEEE----------------------------CCEEEEecCCeEEEEcCCCCEEEEe
Confidence            45899999999999999    998875                            1357899999999999999999888


Q ss_pred             cCC-CcEEEEEE
Q 046186          160 EGS-TPVVAVVL  170 (436)
Q Consensus       160 ~g~-e~l~~v~~  170 (436)
                      .++ ++...+++
T Consensus        79 ~~~~~~~~~~~i   90 (164)
T 2arc_A           79 HPEAREWYHQWV   90 (164)
T ss_dssp             CTTSSEEEEEEE
T ss_pred             CCCCCcEEEEEE
Confidence            763 55555444

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=97.69  E-value=0.00012  Score=63.03  Aligned_cols=64  Identities=9%  Similarity=0.062  Sum_probs=49.5

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCC
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGG  403 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~  403 (436)
                      .+++....++||... -|+|.. .|+.||++|++.+++  .+|.. +  +|++||+++||+|.+|.. +.+.
T Consensus        48 ~~~~g~w~~~pG~~~-~~~~~~-~E~~~Vl~G~~~l~~--~~g~~-~--~l~~GD~~~ip~g~~h~~~~~~~  112 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ-SNTTGY-IEYCHIIEGEARLVD--PDGTV-H--AVKAGDAFIMPEGYTGRWEVDRH  112 (123)
T ss_dssp             TEEEEEEEEEEEEEE-CCCTTE-EEEEEEEEEEEEEEC--TTCCE-E--EEETTCEEEECTTCCCEEEEEEE
T ss_pred             CEEEEEEEECCCcee-eEcCCC-cEEEEEEEEEEEEEE--CCCeE-E--EECCCCEEEECCCCeEEEEECCc
Confidence            578888899998765 255532 899999999999986  23443 3  499999999999999876 4443

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=97.57  E-value=0.00031  Score=63.09  Aligned_cols=74  Identities=11%  Similarity=0.103  Sum_probs=59.6

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC---CCcEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG---GAEFEWI  409 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag---~e~~~~l  409 (436)
                      +..+.++++.||+...+|.|+. .|.+||++|+.++   +.++     ..+.+||.++.|.|..|...+.   ++++..+
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~---~e~~-----~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~  111 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRY---KEHD-----WVAHAGSVVYETASTRHTPQSAYAEGPDIITF  111 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEE---TTSS-----CCBCTTCEEEECSSEEECEEESSSSSSCEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEE---eCCC-----eEECCCeEEEECCCCcceeEeCCCCCCCEEEE
Confidence            5778899999999999999987 5889999999875   2232     2589999999999999987554   5788777


Q ss_pred             EEEecC
Q 046186          410 SFKTND  415 (436)
Q Consensus       410 ~f~~s~  415 (436)
                      ..++..
T Consensus       112 ~~~~G~  117 (159)
T 3ebr_A          112 NIVAGE  117 (159)
T ss_dssp             EEEESC
T ss_pred             EEecCc
Confidence            755444

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.55  E-value=0.00024  Score=64.85  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             ceEEEEEecCCceecccccCC------CcEEEEEEeeeEEEEEEeCCCCeE------------------EEEEecCccEE
Q 046186          334 LSAERGLLHRNAMMVPHWNLN------AHSIMYAISGSCHVQVVDSYGRSV------------------YDGEVRRGQIM  389 (436)
Q Consensus       334 ls~~~v~L~~gam~~PHwh~~------A~ei~yV~~G~grv~vv~~~G~~~------------------~~~~l~~Gdv~  389 (436)
                      -..-.+.|.||.+.+.|.||.      -.|=.+|..|.+++.+  . |...                  -.-.|++||.+
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~-g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesv  129 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--E-GEKTPLPKVLPPQEDREHYTVWHEIELEPGGQY  129 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--S-SSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEE
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--C-CccccCcceeccCCceeeecCCcEEEECCCCEE
Confidence            566789999999999999999      8898889999977766  2 2221                  11259999999


Q ss_pred             EEcCCCEEEEEeCCCcEEEEEEEecC
Q 046186          390 VVPQNFAVVKRAGGAEFEWISFKTND  415 (436)
Q Consensus       390 vVP~g~~h~~~ag~e~~~~l~f~~s~  415 (436)
                      .||.|.+|+..++.+++.+..|.+-.
T Consensus       130 tIppg~~H~f~ageegvli~EvSt~~  155 (175)
T 2y0o_A          130 TIPPNTKHWFQAGEEGAVVTEMSSTS  155 (175)
T ss_dssp             EECTTCCEEEEEEEEEEEEEEEEECC
T ss_pred             EECCCCcEEEEeCCCCEEEEEEeCCC
Confidence            99999999998877787777776553

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.49  E-value=0.00039  Score=63.12  Aligned_cols=63  Identities=14%  Similarity=0.015  Sum_probs=48.8

Q ss_pred             cCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCe
Q 046186           75 RQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVA  154 (436)
Q Consensus        75 ~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~  154 (436)
                      .||.-.--|+++.+|++||++|    +..+.+.+.|.+.               .     .-+...|++||+|++|+|++
T Consensus        42 GPn~r~D~H~~~~eE~Fy~lkG----~m~l~v~d~g~~~---------------~-----~~~dv~i~eGdmfllP~gvp   97 (176)
T 1zvf_A           42 GPNERTDYHINPTPEWFYQKKG----SMLLKVVDETDAE---------------P-----KFIDIIINEGDSYLLPGNVP   97 (176)
T ss_dssp             SSBCCSCEEECSSCEEEEEEES----CEEEEEEECSSSS---------------C-----EEEEEEECTTEEEEECTTCC
T ss_pred             CCCcCCcCcCCCCceEEEEEeC----EEEEEEEcCCCcc---------------c-----ceeeEEECCCCEEEcCCCCC
Confidence            4556678887779999999999    9999987643211               0     12368999999999999999


Q ss_pred             EEEeccC
Q 046186          155 HWCYNEG  161 (436)
Q Consensus       155 h~~~N~g  161 (436)
                      |+-.-..
T Consensus        98 HsP~r~~  104 (176)
T 1zvf_A           98 HSPVRFA  104 (176)
T ss_dssp             EEEEECT
T ss_pred             cCCcccC
Confidence            9986653

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=97.40  E-value=0.00058  Score=61.03  Aligned_cols=65  Identities=6%  Similarity=-0.057  Sum_probs=52.2

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .|....++.+.||+.+.+|+|+..+.+||++|    +-..+.                     |..     .....+++|
T Consensus        44 ~g~~t~lvr~~pG~~~p~H~H~g~ee~~VL~G----~~~~~~---------------------Gd~-----~~~~~~~aG   93 (153)
T 3bal_A           44 TSSWTAIFNCPAGSSFASHIHAGPGEYFLTKG----KMEVRG---------------------GEQ-----EGGSTAYAP   93 (153)
T ss_dssp             TTEEEEEEEECTTEEECCEEESSCEEEEEEES----EEEETT---------------------CGG-----GTSEEEESS
T ss_pred             cceEEEEEEeCCCCCccCccCCCCEEEEEEEE----EEEecC---------------------ccc-----cCccccCCC
Confidence            67888999999999999999999999999999    655431                     110     113578999


Q ss_pred             cEEEeCCCCeEEEec
Q 046186          145 DIFALPAGVAHWCYN  159 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N  159 (436)
                      +.++-|+|..|+..-
T Consensus        94 sYv~ePpGs~H~p~~  108 (153)
T 3bal_A           94 SYGFESSGALHGKTF  108 (153)
T ss_dssp             EEEEECTTCEESCCE
T ss_pred             eEEEcCCCCccccee
Confidence            999999999998543

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=97.38  E-value=0.0025  Score=57.84  Aligned_cols=85  Identities=9%  Similarity=-0.003  Sum_probs=70.6

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC---eEEEEEecCccEEEEcCCCEEEE-EeCCCcEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR---SVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEW  408 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~---~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~  408 (436)
                      ++++..+...||.-..+|=|.+++.+++|++|+...++....+.   ..-...+.+||++++|.+.+|.+ |++++.+.-
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aVS  147 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMVS  147 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEEE
Confidence            56778899999999999999999999999999999998875432   12355689999999999999998 888888877


Q ss_pred             EEEEecCCC
Q 046186          409 ISFKTNDNA  417 (436)
Q Consensus       409 l~f~~s~~p  417 (436)
                      |-.+.-...
T Consensus       148 lHvY~pp~~  156 (171)
T 3eqe_A          148 LHVYSPPLE  156 (171)
T ss_dssp             EEEEESCCC
T ss_pred             EEEeCCCcc
Confidence            777665543

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.37  E-value=0.0024  Score=58.24  Aligned_cols=103  Identities=8%  Similarity=0.007  Sum_probs=71.0

Q ss_pred             cccCCCeEEEEeCCC-CCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC-----eEEEEEe
Q 046186          310 IYTQGAGHITTLNSF-NLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR-----SVYDGEV  383 (436)
Q Consensus       310 ~~~~~~G~~~~~~~~-~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l  383 (436)
                      .+.-.-|.+.++-.. +.+.........  ....+|.+|..|+|..-+++++|++|+..+-++|-...     +.....|
T Consensus        30 ~~~D~RG~f~e~~~~~~~~~~~f~Q~n~--s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~L  107 (174)
T 3ejk_A           30 QIPAEGGPVLHMLRLDSPQFSQFGEIYF--SEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTL  107 (174)
T ss_dssp             EECCTTSCEECCCCTTCTTCCCCCEEEE--EEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEE
T ss_pred             cEecCCcCEEEEEecCccCCCCeeEEEE--EECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEE
Confidence            344455777776443 333321112222  23478999999999988999999999999999996532     2355567


Q ss_pred             c---CccEEEEcCCCEEEEEeCCC-cEEEEEEEec
Q 046186          384 R---RGQIMVVPQNFAVVKRAGGA-EFEWISFKTN  414 (436)
Q Consensus       384 ~---~Gdv~vVP~g~~h~~~ag~e-~~~~l~f~~s  414 (436)
                      .   ....++||.|++|-..+-++ +++++.+-+.
T Consensus       108 s~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~~s~  142 (174)
T 3ejk_A          108 GRPDNYRLLRIPPQVWYGFAATGDTPALVANCTDI  142 (174)
T ss_dssp             ETTTBCEEEEECTTCEEEEEECTTSCEEEEEEESS
T ss_pred             CCccCceEEEeCCCcEEEEEEccCCCEEEEEECCC
Confidence            7   67899999999998855544 6777665443

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.36  E-value=0.001  Score=60.74  Aligned_cols=98  Identities=9%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             ceEEEEEEecCCceecCeeecC-------CceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNS-------PQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI  138 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a-------~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~  138 (436)
                      ++...++.+.||...+.|+|+.       .|-++|+.|    ...+-+  ++..  ...+.-.=  . .|.+..=.....
T Consensus        52 ~Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G----~v~l~~--~g~~--~~~~~v~v--~-dg~~~~~~a~~~  120 (175)
T 2y0o_A           52 RYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYG----KVYLYV--EGEK--TPLPKVLP--P-QEDREHYTVWHE  120 (175)
T ss_dssp             SEEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEE----EEEEEE--SSSC--CSSCSCCC--C-GGGGGGCCCCEE
T ss_pred             CceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecC----EEEEEE--CCcc--ccCcceec--c-CCceeeecCCcE
Confidence            3778899999999999999986       466679999    766654  3211  00000000  0 000000001235


Q ss_pred             eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCC
Q 046186          139 RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANN  176 (436)
Q Consensus       139 ~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~  176 (436)
                      ..|++||++.||+|+.||+.| +.+.++ |.-+.+.+.
T Consensus       121 i~L~pGesvtIppg~~H~f~a-geegvl-i~EvSt~~d  156 (175)
T 2y0o_A          121 IELEPGGQYTIPPNTKHWFQA-GEEGAV-VTEMSSTST  156 (175)
T ss_dssp             EEECTTCEEEECTTCCEEEEE-EEEEEE-EEEEEECCC
T ss_pred             EEECCCCEEEECCCCcEEEEe-CCCCEE-EEEEeCCCC
Confidence            799999999999999999999 334444 444555554

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.29  E-value=0.00081  Score=61.11  Aligned_cols=59  Identities=15%  Similarity=0.261  Sum_probs=47.2

Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG  403 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~  403 (436)
                      .||+-.-=|.| ...|+.||++|+..+.+.+. |. .-+-.|++||+|++|+|-+|.-.+..
T Consensus        43 Gpn~r~d~H~h-~~dE~FyvlkG~m~i~v~d~-g~-~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           43 GPNHRTDYHDD-PLEEFFYQLRGNAYLNLWVD-GR-RERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             SCBCCCCEEEC-SSCEEEEEEESCEEEEEEET-TE-EEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             CCCcCccCcCC-CCceEEEEEeeEEEEEEEcC-Cc-eeeEEECCCCEEEeCCCCCcCccccC
Confidence            45566666766 67899999999999999983 32 34566999999999999999876644

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.28  E-value=0.0011  Score=60.10  Aligned_cols=61  Identities=18%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             ceecccccCCCcEEEEEEeeeEEEEEEeCCC---CeEEEEEecCccEEEEcCCCEEEEEeCCCcEE
Q 046186          345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYG---RSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFE  407 (436)
Q Consensus       345 am~~PHwh~~A~ei~yV~~G~grv~vv~~~G---~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~  407 (436)
                      .-.-=| |-...|+.|+++|+..+.+.+. |   .+.-+-.|++||+|++|+|-+|.-.+..+...
T Consensus        45 ~r~D~H-~~~~eE~Fy~lkG~m~l~v~d~-g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e~v~  108 (176)
T 1zvf_A           45 ERTDYH-INPTPEWFYQKKGSMLLKVVDE-TDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVG  108 (176)
T ss_dssp             CCSCEE-ECSSCEEEEEEESCEEEEEEEC-SSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEE
T ss_pred             cCCcCc-CCCCceEEEEEeCEEEEEEEcC-CCcccceeeEEECCCCEEEcCCCCCcCCcccCCcEE
Confidence            434445 3346799999999999999993 4   23456779999999999999999766544333

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.26  E-value=0.0035  Score=55.20  Aligned_cols=99  Identities=12%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             CCCeEEEEeCC-CCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCc-cEEE
Q 046186          313 QGAGHITTLNS-FNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRG-QIMV  390 (436)
Q Consensus       313 ~~~G~~~~~~~-~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~G-dv~v  390 (436)
                      ...|.++.+.. ++.|.-  +.=........+|..+.+|.|...+++.+|++|+..|-+-|  |+..-...|.+. ..+.
T Consensus        15 D~RG~L~~~e~~~~ipf~--ikRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldD--g~~~~~~~L~~~~~gL~   90 (141)
T 2pa7_A           15 DSRGSLVAIEENKNIPFS--IKRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDD--GNIIQEITLDSPAVGLY   90 (141)
T ss_dssp             ETTEEEEEEETTTTSSSC--CCEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEEC--SSCEEEEEECCTTEEEE
T ss_pred             cCCCcEEEEeccCCCCCC--ccEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEEC--CcEEEEEEECCCCcEEE
Confidence            35688888876 555541  12222223345999999999999999999999999999954  543233335444 4599


Q ss_pred             EcCCCEEEEEeCCCcEEEEEEEecC
Q 046186          391 VPQNFAVVKRAGGAEFEWISFKTND  415 (436)
Q Consensus       391 VP~g~~h~~~ag~e~~~~l~f~~s~  415 (436)
                      ||.|.+|.+.+-+++..++.+.+..
T Consensus        91 IppgvWh~~~~~s~~avllvlas~~  115 (141)
T 2pa7_A           91 VGPAVWHEMHDFSSDCVMMVLASDY  115 (141)
T ss_dssp             ECTTCEEEEECCCTTCEEEEEESSC
T ss_pred             eCCCEEEEEEEcCCCeEEEEECCCC
Confidence            9999999997766667777776443

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=97.17  E-value=0.0029  Score=57.41  Aligned_cols=87  Identities=10%  Similarity=0.019  Sum_probs=67.5

Q ss_pred             ceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ++.+..+...||.-..+|=|. +..+++|++|    +....+-...  +              +. .  ...+...+.+|
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G----~l~e~~y~~~--~--------------~~-~--~~~~~~~l~~G  124 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEG----KLLNSIYRST--G--------------EH-A--ELSNSYFVHEG  124 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEES----EEEEEEEEEC--S--------------SS-E--EEEEEEEEETT
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEee----eEEEEEeecC--C--------------Cc-e--eecceEEeCCC
Confidence            578899999999999999998 6789999999    7766543210  0              00 0  01135789999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      |++++|++.+|.+.|.++++++.|-++....
T Consensus       125 ~~~~~~~~~iH~V~N~~~~~aVSlHvY~pp~  155 (171)
T 3eqe_A          125 ECLISTKGLIHKMSNPTSERMVSLHVYSPPL  155 (171)
T ss_dssp             CEEEECTTCEEEEECCSSSCEEEEEEEESCC
T ss_pred             cEEEeCCCCEEEEECCCCCCEEEEEEeCCCc
Confidence            9999999999999999999998888777543

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.14  E-value=0.0015  Score=59.06  Aligned_cols=73  Identities=18%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC--C-cEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG--A-EFEWI  409 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~--e-~~~~l  409 (436)
                      +..+.++++.||+...+|+|+. .+.+||++|+.+.+   ..+.    ..+.+||.++.|.|-.|...+.+  + ++..|
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~f~~~---~~~~----~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l  113 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHTG-TVHMYTISGCWYYT---EYPG----QKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVI  113 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEESS-CEEEEEEESEEEET---TCTT----SCEETTEEEEECTTCEECEECCTTCSSCEEEE
T ss_pred             CcEEEEEEECCCCcCCcccCCC-CEEEEEEEEEEEEC---CCce----EEECCCeEEEeCCCCceeeEeCCCCCCCcEEE
Confidence            5678899999999999999986 58899999998863   1112    34789999999999999986642  3 77555


Q ss_pred             EEEe
Q 046186          410 SFKT  413 (436)
Q Consensus       410 ~f~~  413 (436)
                      ..++
T Consensus       114 ~v~~  117 (165)
T 3cjx_A          114 FMLS  117 (165)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=97.13  E-value=0.0043  Score=57.98  Aligned_cols=81  Identities=14%  Similarity=-0.015  Sum_probs=65.5

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEe--CCCCeE---EEEEecCccEEEEcC--CCEEEE-Ee-CC
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVD--SYGRSV---YDGEVRRGQIMVVPQ--NFAVVK-RA-GG  403 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~--~~G~~~---~~~~l~~Gdv~vVP~--g~~h~~-~a-g~  403 (436)
                      .+++..+...||.-.++|-|.+ +.+++|++|+...++..  .+|...   -...+.+||+++|+.  |..|.+ |+ ++
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~  156 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  156 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCC
Confidence            5677889999999999999997 99999999999999976  334321   145699999999999  999988 78 46


Q ss_pred             CcEEEEEEEec
Q 046186          404 AEFEWISFKTN  414 (436)
Q Consensus       404 e~~~~l~f~~s  414 (436)
                      +....|-++.-
T Consensus       157 ~~avsLHvY~~  167 (208)
T 2gm6_A          157 RVSISIHVYGA  167 (208)
T ss_dssp             SCEEEEEEESS
T ss_pred             CcEEEEEEEcC
Confidence            77777766533

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=97.09  E-value=0.0028  Score=54.76  Aligned_cols=62  Identities=18%  Similarity=0.076  Sum_probs=45.4

Q ss_pred             ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe-CC-CcEEEEEEEecC
Q 046186          347 MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA-GG-AEFEWISFKTND  415 (436)
Q Consensus       347 ~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a-g~-e~~~~l~f~~s~  415 (436)
                      ..||.| ...++.||++|++.+.+   +|+   ...+++||+++||.|.+|...+ ++ ++++++.+.-+.
T Consensus        31 ~~p~~h-~~~~i~~v~~G~~~~~i---~~~---~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i~f~~   94 (164)
T 2arc_A           31 DRPLGM-KGYILNLTIRGQGVVKN---QGR---EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRP   94 (164)
T ss_dssp             EETTCC-SSEEEEEEEEECEEEEE---TTE---EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEECC
T ss_pred             ccccCC-CceEEEEEEEeEEEEEE---CCE---EEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEEEECC
Confidence            458887 46699999999999987   222   2359999999999999998744 32 556655544333

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.02  E-value=0.0047  Score=58.94  Aligned_cols=76  Identities=14%  Similarity=0.079  Sum_probs=55.4

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      +|++..+.+ .|.-..-.+.  .+|+.||++|+++++.   .|.. +.  +++||++|||+|..+...+...-..+++..
T Consensus        46 ~~~~G~~~~-~g~~~v~~~p--~dE~~~VleG~~~lt~---~g~~-~~--~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~  116 (238)
T 3myx_A           46 GIAAGIVEF-GTALSVEAYP--YTEMLVMHRGSVTLTS---GTDS-VT--LSTGESAVIGRGTQVRIDAQPESLWAFCAS  116 (238)
T ss_dssp             SEEEEEEEE-CSEEEESSCS--SEEEEEEEESEEEEEE---TTEE-EE--EETTCEEEECTTCCEEEEECTTEEEEEEEE
T ss_pred             CeEEEEEEe-ccccccccCC--CcEEEEEEEeEEEEEC---CCeE-EE--EcCCCEEEECCCCEEEEEecCCeEEEEEec
Confidence            788888888 6655542222  3799999999999997   3444 33  999999999999999887766545555555


Q ss_pred             e-cCCC
Q 046186          413 T-NDNA  417 (436)
Q Consensus       413 ~-s~~p  417 (436)
                      . .+.|
T Consensus       117 ~~~~~p  122 (238)
T 3myx_A          117 TQASGP  122 (238)
T ss_dssp             CSCCSC
T ss_pred             cCCCCC
Confidence            5 3444

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=96.96  E-value=0.0019  Score=62.78  Aligned_cols=62  Identities=16%  Similarity=0.293  Sum_probs=46.7

Q ss_pred             ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          347 MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       347 ~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .-=| |..+.|+.|+++|..++.+.+. |. .-+-.|++||+|++|+|-+|.=.+.. +...+.+.
T Consensus        44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~-g~-~~~V~i~eGemfllP~gv~HsP~r~~-et~gLviE  105 (286)
T 2qnk_A           44 KDYH-IEEGEEVFYQLEGDMVLRVLEQ-GK-HRDVVIRQGEIFLLPARVPHSPQRFA-NTVGLVVE  105 (286)
T ss_dssp             CCEE-ECSSCEEEEEEESCEEEEEEET-TE-EEEEEECTTEEEEECTTCCEEEEECT-TCEEEEEE
T ss_pred             ccCc-CCCCCeEEEEEeCeEEEEEEeC-Cc-eeeEEECCCeEEEeCCCCCcCCcccC-CeEEEEEe
Confidence            4445 6667899999999999999994 43 34566999999999999999876643 34443343

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=96.92  E-value=0.0017  Score=58.01  Aligned_cols=77  Identities=8%  Similarity=-0.116  Sum_probs=59.0

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      |-...++++.||+.+.+||||.. |.+|||+|.-...    .|..-.+..+.+|+.++-|.|..|+....+++.+++.+.
T Consensus        45 g~~t~lvr~~pG~~~p~H~H~g~-ee~~VL~G~~~~~----~Gd~~~~~~~~aGsYv~ePpGs~H~p~~~~~~~~~~~~~  119 (153)
T 3bal_A           45 SSWTAIFNCPAGSSFASHIHAGP-GEYFLTKGKMEVR----GGEQEGGSTAYAPSYGFESSGALHGKTFFPVESQFYMTF  119 (153)
T ss_dssp             TEEEEEEEECTTEEECCEEESSC-EEEEEEESEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEESSCEEEEEEE
T ss_pred             ceEEEEEEeCCCCCccCccCCCC-EEEEEEEEEEEec----CccccCccccCCCeEEEcCCCCcccceeCCCCeEEEEEE
Confidence            77788999999999999999855 7799999988654    443212556789999999999999865555555555544


Q ss_pred             ec
Q 046186          413 TN  414 (436)
Q Consensus       413 ~s  414 (436)
                      +.
T Consensus       120 ~G  121 (153)
T 3bal_A          120 LG  121 (153)
T ss_dssp             ES
T ss_pred             EC
Confidence            43

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=96.89  E-value=0.0018  Score=62.88  Aligned_cols=59  Identities=22%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             cCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCC
Q 046186           75 RQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGV  153 (436)
Q Consensus        75 ~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~  153 (436)
                      .|+.-.--| |+ .+|++|+++|    ...+.+++.|                        .-|...|++||+|++|+|+
T Consensus        39 GpN~R~d~H-~~~~dE~FyqlkG----~m~l~~~d~g------------------------~~~~V~i~eGemfllP~gv   89 (286)
T 2qnk_A           39 GPNTRKDYH-IEEGEEVFYQLEG----DMVLRVLEQG------------------------KHRDVVIRQGEIFLLPARV   89 (286)
T ss_dssp             SCBCCCCEE-ECSSCEEEEEEES----CEEEEEEETT------------------------EEEEEEECTTEEEEECTTC
T ss_pred             CCCcCccCc-CCCCCeEEEEEeC----eEEEEEEeCC------------------------ceeeEEECCCeEEEeCCCC
Confidence            344446778 55 9999999999    9999987532                        1245899999999999999


Q ss_pred             eEEEeccCC
Q 046186          154 AHWCYNEGS  162 (436)
Q Consensus       154 ~h~~~N~g~  162 (436)
                      +|.-....+
T Consensus        90 ~HsP~r~~e   98 (286)
T 2qnk_A           90 PHSPQRFAN   98 (286)
T ss_dssp             CEEEEECTT
T ss_pred             CcCCcccCC
Confidence            999887544

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=96.82  E-value=0.0064  Score=56.78  Aligned_cols=86  Identities=15%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeC-CCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPF-PGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~-pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .+.+..+...||...++|-|....+++|++|    +....+-. +.                .|...  ...+...+.+|
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~~~~~~VL~G----~l~e~~y~~~~----------------~g~~l--~~~~~~~l~~G  135 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTVWGLIGMLRG----AEYSQPFVLDG----------------SGRPV--LHGEPTRLEPG  135 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSSCEEEEEEES----CEEEEEEEECT----------------TSCEE--ECSCCEEECTT
T ss_pred             CEEEEEEEeCCCcccCcccCCcceEEEEecc----cEEEEEeecCC----------------CCccc--cccceEEeCCC
Confidence            5788999999999999999998999999999    66555421 10                00000  01235799999


Q ss_pred             cEEEeCC--CCeEEEecc-CCCcEEEEEEEec
Q 046186          145 DIFALPA--GVAHWCYNE-GSTPVVAVVLLDV  173 (436)
Q Consensus       145 Dv~~iPa--G~~h~~~N~-g~e~l~~v~~~d~  173 (436)
                      |++++++  |..|-+.|. ++++.+.|-++-.
T Consensus       136 ~v~~~~~~~g~iH~V~N~~~~~~avsLHvY~~  167 (208)
T 2gm6_A          136 HVEAVSPTVGDIHRVHNAYDDRVSISIHVYGA  167 (208)
T ss_dssp             CEEEEBTTTBCCEEEEESCSSSCEEEEEEESS
T ss_pred             CEEEECCCCCCeEEeccCCCCCcEEEEEEEcC
Confidence            9999999  999999998 6888888877643

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=96.79  E-value=0.0036  Score=59.10  Aligned_cols=68  Identities=10%  Similarity=0.060  Sum_probs=54.5

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      +..+.++++.||+...+|+|+. .|.+||++|+..    +.      +..+.+||.++.|.|..|.-.+ .+++.++...
T Consensus        42 g~~~~lvr~~pG~~~p~H~H~g-~Ee~~VL~G~f~----d~------~~~~~~Gd~~~~P~g~~H~p~a-~~gc~~~vk~  109 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTHDG-GEEFIVLDGVFQ----DE------HGDYPAGTYVRNPPTTSHVPGS-AEGCTIFVKL  109 (223)
T ss_dssp             CEEEEEEEECTTEECCCEECTT-CEEEEEEEEEEE----ET------TEEEETTEEEEECTTCEECCEE-SSCEEEEEEE
T ss_pred             ccEEEEEEECCCCCcccccCCC-CEEEEEEEeEEE----EC------CeEECCCeEEEeCCCCccccEe-CCCCEEEEEe
Confidence            4467899999999999999975 588999999964    43      2358899999999999998777 5666655543

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=96.72  E-value=0.026  Score=51.27  Aligned_cols=118  Identities=11%  Similarity=-0.034  Sum_probs=76.7

Q ss_pred             CCccccccccCCCceeecCCcE-EEEeCCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEee
Q 046186           30 DCQINNLEALEPNNRVECEAGV-VETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDP  107 (436)
Q Consensus        30 ~C~~~~l~a~eP~~~~~se~G~-~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v  107 (436)
                      +..+..+...+|.. +.-+-|. +|.+..+...+..- .-.......+|.+...|||. ..++++|++|    +..+-++
T Consensus        17 ~t~i~gv~ii~~~~-~~D~RG~f~e~~~~~~~~~~~f-~Q~n~s~s~~GvlRG~H~h~~q~klv~~v~G----~v~dv~v   90 (174)
T 3ejk_A           17 LLPVEGAQLSELRQ-IPAEGGPVLHMLRLDSPQFSQF-GEIYFSEVLPRRVKAWKRHSLMTQLFAVPVG----CIHVVLY   90 (174)
T ss_dssp             ECSSTTCEEEECCE-ECCTTSCEECCCCTTCTTCCCC-CEEEEEEECBTCEEEEEEESSCCEEEEEEES----EEEEEEE
T ss_pred             cCCCCCEEEEeCCc-EecCCcCEEEEEecCccCCCCe-eEEEEEECCCCCEECcEecCCCceEEEEEee----EEEEEEE
Confidence            34566666677764 5555665 56666543222111 11222345789999999998 8999999999    8888877


Q ss_pred             CCCC-CCcccCCCCCCCCccCCcccccccceeeeec---cCcEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          108 FPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFR---QGDIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       108 ~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~---~GDv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      +--. +-||.                  .-....|.   ..-.++||+|++|-+.|.++++++++...
T Consensus        91 D~R~~SpTfg------------------~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~~  140 (174)
T 3ejk_A           91 DGREKSPTSG------------------RLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANCT  140 (174)
T ss_dssp             CCCTTCTTTT------------------CEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEEE
T ss_pred             eCCCCCCCCC------------------eEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEEEC
Confidence            5310 11221                  01245665   66799999999999999988667766543

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=96.68  E-value=0.0045  Score=54.28  Aligned_cols=77  Identities=8%  Similarity=0.140  Sum_probs=52.6

Q ss_pred             ceEEEEEEecCC----ceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeee
Q 046186           66 GVAVVRHTIRQK----GLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRR  140 (436)
Q Consensus        66 gv~~~r~~i~pg----~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~  140 (436)
                      +-.|+..+..|.    ++.-.|-|+ .+|++||++|    +.++.+-...  +               ....   -....
T Consensus        24 ~W~Va~~n~~~~~~~~~i~~~h~H~~tDE~Fivl~G----~l~i~~rd~~--~---------------~~~~---d~~V~   79 (140)
T 3d0j_A           24 KWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAG----KAILITAEKE--N---------------DKFN---IELTL   79 (140)
T ss_dssp             SEEEEEEECCGGGBTTTCCEEEEESSCCEEEEEEES----CEEEEEEEEE--T---------------TEEE---EEEEE
T ss_pred             CEEEEEEeccCcCCcccCHhhccCCCCCeEEEEEec----EEEEEEecCc--C---------------CCCc---cceEE
Confidence            445555555544    577788888 9999999999    8888763110  0               0000   12578


Q ss_pred             eccCcEEEeCCCCeEEEeccCCCcEE
Q 046186          141 FRQGDIFALPAGVAHWCYNEGSTPVV  166 (436)
Q Consensus       141 l~~GDv~~iPaG~~h~~~N~g~e~l~  166 (436)
                      |++|++++||+|+-|......+..+.
T Consensus        80 l~~Ge~yvVPkGveH~p~a~~e~~vL  105 (140)
T 3d0j_A           80 MEKGKVYNVPAECWFYSITQKDTKMM  105 (140)
T ss_dssp             CCTTCCEEECTTCEEEEEECTTCEEE
T ss_pred             ecCCCEEEeCCCccCcccCCCceEEE
Confidence            99999999999999998875444333

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=96.56  E-value=0.48  Score=45.01  Aligned_cols=72  Identities=18%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             EEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186           68 AVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI  146 (436)
Q Consensus        68 ~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv  146 (436)
                      .+...++.||.-+.||-|. -+.+.||++|    +....                           |+......+++|||
T Consensus        42 v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G----~~~H~---------------------------DS~Gn~~~i~~Gdv   90 (242)
T 1tq5_A           42 VINDDVIEAGQGFGTHPHKDMEILTYVLEG----TVEHQ---------------------------DSMGNKEQVPAGEF   90 (242)
T ss_dssp             EEEEEEECTTCEEEEEEECSCEEEEEEEES----EEEEE---------------------------ESSSCEEEEETTCE
T ss_pred             eeccceeCCCCcCCCcCCCCcEEEEEEEEe----EEEEE---------------------------eCCCCcEEECCCcE
Confidence            3456788999888999998 5569999999    76655                           22233579999999


Q ss_pred             EEeCC--CCeEEEeccC-CCcEEEEEE
Q 046186          147 FALPA--GVAHWCYNEG-STPVVAVVL  170 (436)
Q Consensus       147 ~~iPa--G~~h~~~N~g-~e~l~~v~~  170 (436)
                      -..-|  |+.|.-.|.. ++++.++-+
T Consensus        91 Q~MtAG~GI~HsE~~~~~~~~l~~lQl  117 (242)
T 1tq5_A           91 QIMSAGTGIRHSEYNPSSTERLHLYQI  117 (242)
T ss_dssp             EEEECTTCEEEEEECCCSSCCEEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCeEEEEEE
Confidence            99966  5899999965 467776654

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=96.42  E-value=0.013  Score=55.59  Aligned_cols=65  Identities=6%  Similarity=-0.088  Sum_probs=49.7

Q ss_pred             ceEEEEEEecCCce--ecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           66 GVAVVRHTIRQKGL--LLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        66 gv~~~r~~i~pg~l--~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      +.-+....+....-  ..+|||+.-+++||++|    ++. .+ .-.                        ....+.+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~G----~~~-~i-~~~------------------------~~~~~~l~~   55 (276)
T 3gbg_A            6 SFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSG----IAK-LI-DKN------------------------CLVSYEINS   55 (276)
T ss_dssp             TEEEEEEEECTTCEEEEEEEECSSCEEEEESSS----CEE-EE-ETT------------------------TTEEEEECT
T ss_pred             hhhhhhhhhhcccchhccHhhhcceEEEEEecC----ceE-EE-CCc------------------------cceeEEEcC
Confidence            44556666666663  68899999999999999    888 43 210                        011689999


Q ss_pred             CcEEEeCCCCeEEEecc
Q 046186          144 GDIFALPAGVAHWCYNE  160 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~  160 (436)
                      ||++++|+|.+|.+...
T Consensus        56 g~l~~i~p~~~h~~~~~   72 (276)
T 3gbg_A           56 SSIILLKKNSIQRFSLT   72 (276)
T ss_dssp             TEEEEECTTCEEEEEEE
T ss_pred             CCEEEEcCCCceeeccc
Confidence            99999999999998765

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=96.41  E-value=0.0027  Score=54.17  Aligned_cols=56  Identities=5%  Similarity=0.031  Sum_probs=41.2

Q ss_pred             EEEEEecCCceecccccCCCc-EEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186          336 AERGLLHRNAMMVPHWNLNAH-SIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK  399 (436)
Q Consensus       336 ~~~v~L~~gam~~PHwh~~A~-ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~  399 (436)
                      +..=..+||...-.+   ..+ |+.|+++|+++++.  .+|..   .++++||+++||+|+.-.-
T Consensus        44 ~GvWe~tPG~~~~~~---~~~~E~~~iLeG~~~lt~--ddG~~---~~l~aGD~~~~P~G~~gtW  100 (116)
T 3es4_A           44 VAVWMAEPGIYNYAG---RDLEETFVVVEGEALYSQ--ADADP---VKIGPGSIVSIAKGVPSRL  100 (116)
T ss_dssp             EEEEEECSEEEEECC---CSEEEEEEEEECCEEEEE--TTCCC---EEECTTEEEEECTTCCEEE
T ss_pred             EEEEecCCceeECee---CCCcEEEEEEEeEEEEEe--CCCeE---EEECCCCEEEECCCCeEEE
Confidence            334467777766433   345 99999999999985  34654   3499999999999997543

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=96.37  E-value=0.044  Score=50.78  Aligned_cols=84  Identities=7%  Similarity=-0.063  Sum_probs=66.7

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCC--CC----eEEEEEecCccEEEE-cCCCEEEE-EeC-C
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSY--GR----SVYDGEVRRGQIMVV-PQNFAVVK-RAG-G  403 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~--G~----~~~~~~l~~Gdv~vV-P~g~~h~~-~ag-~  403 (436)
                      ..++..+...||.-.++|=|.+++-+++|++|+...++.+..  |.    ..-...+.+|||.++ |.+..|.+ |++ +
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~  148 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  148 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence            477778899999999999999999999999999999998742  21    133567999999999 88889987 888 5


Q ss_pred             CcEEEEEEEecCC
Q 046186          404 AEFEWISFKTNDN  416 (436)
Q Consensus       404 e~~~~l~f~~s~~  416 (436)
                      +.+.-|=++.-..
T Consensus       149 ~~avSlHvY~pp~  161 (200)
T 3eln_A          149 EPAVSLHLYSPPF  161 (200)
T ss_dssp             CCEEEEEEEESCC
T ss_pred             CCEEEEEeCCCCc
Confidence            6666555554443

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=96.27  E-value=0.073  Score=48.19  Aligned_cols=101  Identities=9%  Similarity=0.042  Sum_probs=68.7

Q ss_pred             CCcEE-EEeCCCC-ccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEE-EEEeeCCCCCCcccCCCCCCCC
Q 046186           48 EAGVV-ETWDPGH-EQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRG-SHGDPFPGYPETYQSPQQGGFG  124 (436)
Q Consensus        48 e~G~~-e~~~~~~-p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g-~~g~v~pg~~et~~~~~~~~~~  124 (436)
                      |||.+ |+|.... +.-.....+.....|.+|....+|-.+++|+-|...|    .+ .+.++.|+..-           
T Consensus        28 EGG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv~sdEiW~~~~G----~pL~l~l~~~dg~~-----------   92 (170)
T 1yud_A           28 EGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAG----QSLTIYMISPEGEL-----------   92 (170)
T ss_dssp             TSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEECSSCEEEEEEEE----SCEEEEEECTTSCE-----------
T ss_pred             CCceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEcCCCEEEEEEcC----CCEEEEEEcCCCCE-----------
Confidence            89997 5564321 1111234678888899999888888889999999999    76 77777764210           


Q ss_pred             ccCCccccccccee-eeeccCcE--EEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          125 ESAGRSQQDSHQKI-RRFRQGDI--FALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       125 ~~~~~~~~d~~~k~-~~l~~GDv--~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                              . ..+. .++.+|++  ++||+|+-+...+.+.+.+.+-|+..
T Consensus        93 --------~-~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g~~~LV~C~Va  134 (170)
T 1yud_A           93 --------T-TAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVGCMVS  134 (170)
T ss_dssp             --------E-EEEESSCTTTTEESCEEECTTCEEEEEESSSSEEEEEEEES
T ss_pred             --------E-EEEeCCCcccCceeEEEECCCCEEEEEECCCCcEEEEEEEC
Confidence                    0 0011 45888999  99999999999887325444445444

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=96.26  E-value=0.016  Score=49.25  Aligned_cols=62  Identities=8%  Similarity=0.011  Sum_probs=45.6

Q ss_pred             eEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcE
Q 046186           67 VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDI  146 (436)
Q Consensus        67 v~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv  146 (436)
                      +.+..=...||..... |....|++||++|    ++++..  .                         .....+|++||+
T Consensus        42 ~~~GvWe~tPG~~~~~-~~~~~E~~~iLeG----~~~lt~--d-------------------------dG~~~~l~aGD~   89 (116)
T 3es4_A           42 TIVAVWMAEPGIYNYA-GRDLEETFVVVEG----EALYSQ--A-------------------------DADPVKIGPGSI   89 (116)
T ss_dssp             CEEEEEEECSEEEEEC-CCSEEEEEEEEEC----CEEEEE--T-------------------------TCCCEEECTTEE
T ss_pred             EEEEEEecCCceeECe-eCCCcEEEEEEEe----EEEEEe--C-------------------------CCeEEEECCCCE
Confidence            4444558899987543 3335599999999    888873  1                         123579999999


Q ss_pred             EEeCCCCeEEEecc
Q 046186          147 FALPAGVAHWCYNE  160 (436)
Q Consensus       147 ~~iPaG~~h~~~N~  160 (436)
                      ++||+|..-.+.-.
T Consensus        90 ~~~P~G~~gtWev~  103 (116)
T 3es4_A           90 VSIAKGVPSRLEIL  103 (116)
T ss_dssp             EEECTTCCEEEEEC
T ss_pred             EEECCCCeEEEEEe
Confidence            99999998877543

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=96.22  E-value=0.033  Score=51.57  Aligned_cols=99  Identities=13%  Similarity=0.151  Sum_probs=66.6

Q ss_pred             cccCCCeEEEEeCCC------CCCccccccceEEEEEecCCceecccccCC---CcEEEEEEeeeEEEEEEeCCCC----
Q 046186          310 IYTQGAGHITTLNSF------NLPVLRWIQLSAERGLLHRNAMMVPHWNLN---AHSIMYAISGSCHVQVVDSYGR----  376 (436)
Q Consensus       310 ~~~~~~G~~~~~~~~------~~P~L~~l~ls~~~v~L~~gam~~PHwh~~---A~ei~yV~~G~grv~vv~~~G~----  376 (436)
                      ++.-.-|.+.+.-..      .+|-..  ......-  .+|-+|..|||..   -.++++|++|+...=+||-.-.    
T Consensus        39 ~~~D~RG~f~e~~~~~~f~~~gi~~f~--Q~n~S~s--~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTf  114 (196)
T 1wlt_A           39 VFPDKRGFFLEVFKSEDFTKMRIPNVI--QTNMSFS--RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTF  114 (196)
T ss_dssp             CEEETTEEEEEEEEHHHHHHTTCCCEE--EEEEEEE--CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTT
T ss_pred             ceecCCcCEEEEEecchhhhcCCCCEE--EEEEEEC--CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCC
Confidence            344456777775432      333122  2222222  4899999999964   4799999999998888886422    


Q ss_pred             -eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          377 -SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       377 -~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                       +.....|.+  +..++||.|++|-..+-+++.+++..-
T Consensus       115 G~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~a~~ly~~  153 (196)
T 1wlt_A          115 GKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFIT  153 (196)
T ss_dssp             TCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEEE
T ss_pred             CeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEEe
Confidence             245556775  799999999999987776666664443

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=96.18  E-value=0.055  Score=49.01  Aligned_cols=119  Identities=12%  Similarity=0.068  Sum_probs=78.6

Q ss_pred             CCCeEEEEeCCCCCC--ccccccceEEEEEecCCceecccccCCCcEEEEEEeeeE-EEEEEeCCCCe---EEEEEecCc
Q 046186          313 QGAGHITTLNSFNLP--VLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSC-HVQVVDSYGRS---VYDGEVRRG  386 (436)
Q Consensus       313 ~~~G~~~~~~~~~~P--~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~g-rv~vv~~~G~~---~~~~~l~~G  386 (436)
                      |.||+.++..... |  .-..--.++.+.-|.+|.....|-+ +|+|+-|...|.+ .+.+++++|..   ++-.++.+|
T Consensus        27 PEGG~yret~rs~-~~~~~~R~~~T~IYfLL~~g~~S~~HRv-~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~G  104 (170)
T 1yud_A           27 VEGGFYRSSYRSE-TAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG  104 (170)
T ss_dssp             TTSSEEEEEEECS-SBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCceEEEeecCC-CCCCCCCccceEEEEEECCCCCCeeEEc-CCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccC
Confidence            4788887765443 1  1123346777788999997655555 5889999999997 89999998863   334457899


Q ss_pred             cE--EEEcCCCEEEEEeCCCcEEEEEEEecCCCC--ccccccccccccccC
Q 046186          387 QI--MVVPQNFAVVKRAGGAEFEWISFKTNDNAM--ISPLSGRTSVMRGKG  433 (436)
Q Consensus       387 dv--~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~--~~~LaG~~sv~~~lp  433 (436)
                      ++  +|||+|..........+..+|+...+.--.  --.|+-+..+++..|
T Consensus       105 e~pQ~vVP~G~wqaa~~~~g~~~LV~C~VaPGF~f~dfel~~~~~L~~~~P  155 (170)
T 1yud_A          105 ERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPGFTFDDFELFSQEALLAMYP  155 (170)
T ss_dssp             EESCEEECTTCEEEEEESSSSEEEEEEEESSCCCGGGCCBCBHHHHHHSCC
T ss_pred             ceeEEEECCCCEEEEEECCCCcEEEEEEECCCccCCceEEcCHHHHHhHCc
Confidence            99  999999998874332256667766665221  113444444444444

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=96.13  E-value=0.054  Score=49.66  Aligned_cols=71  Identities=15%  Similarity=0.026  Sum_probs=55.0

Q ss_pred             cCCceeccccc--CCCcEEEEEEeeeEEEEEEeCCC-C----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          342 HRNAMMVPHWN--LNAHSIMYAISGSCHVQVVDSYG-R----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       342 ~~gam~~PHwh--~~A~ei~yV~~G~grv~vv~~~G-~----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+|-+|..|+|  ..-.++++|++|++..=+||-.- +    +.....|.+  +..++||.|++|-..+-+++++++-.-
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~  135 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKC  135 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEec
Confidence            38999999999  55679999999999888888642 1    345556665  689999999999987766666655543

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=96.00  E-value=0.046  Score=50.65  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=56.7

Q ss_pred             cCCceecccccCCCcEEEEEEe-eeEEEEEEeCC-----CCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          342 HRNAMMVPHWNLNAHSIMYAIS-GSCHVQVVDSY-----GRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~-G~grv~vv~~~-----G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+|.+|..|+|+ -.++++|++ |+...=+||-.     |+. ....|..+..++||.|++|-..+-+++.+++..-
T Consensus        68 ~~GvlRGlH~h~-q~Klv~~~~~G~v~dV~VDlR~SpTfg~~-~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~~y~~  142 (197)
T 1nxm_A           68 RKNVLRGLHAEP-WDKYISVADGGKVLGTWVDLREGETFGNT-YQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLV  142 (197)
T ss_dssp             ETTBEEEEEECS-SCEEEEECSSCCEEEEEEECBSSTTTTCE-EEEEECTTEEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             CCCCcceeeecc-cceEEEEcCCCEEEEEEEECCCCCCCCeE-EEEEeCCCcEEEeCCCeEEEEEeccCCeEEEEEC
Confidence            589999999995 459999999 99999999976     333 5556888999999999999987777777766543

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=95.97  E-value=0.025  Score=51.97  Aligned_cols=66  Identities=11%  Similarity=0.165  Sum_probs=49.7

Q ss_pred             EEEEecCC-ceecccccCCCcEEEEEEeeeEEEEEEeCCCC---------------------------------eEEEEE
Q 046186          337 ERGLLHRN-AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR---------------------------------SVYDGE  382 (436)
Q Consensus       337 ~~v~L~~g-am~~PHwh~~A~ei~yV~~G~grv~vv~~~G~---------------------------------~~~~~~  382 (436)
                      ..+-|.++ +...+|+.+. +-+..++.|+=++.++.|.-.                                 ..++.+
T Consensus       126 ~~~wiG~~gs~t~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  204 (235)
T 4gjz_A          126 INAWFGPQGTISPLHQDPQ-QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCI  204 (235)
T ss_dssp             EEEEEECTTCEEEEECCSS-EEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEE
T ss_pred             eEEEEeCCCCCceeeeccc-cceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEE
Confidence            34556554 5555688775 568899999999999987410                                 135678


Q ss_pred             ecCccEEEEcCCCEEEEEeCC
Q 046186          383 VRRGQIMVVPQNFAVVKRAGG  403 (436)
Q Consensus       383 l~~Gdv~vVP~g~~h~~~ag~  403 (436)
                      |++||++|||.||.|...+-+
T Consensus       205 l~pGD~LyiP~gW~H~V~~l~  225 (235)
T 4gjz_A          205 LSPGEILFIPVKYWHYVRALD  225 (235)
T ss_dssp             ECTTCEEEECTTCEEEEEESS
T ss_pred             ECCCCEEEeCCCCcEEEEECC
Confidence            999999999999999985544

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=95.97  E-value=0.028  Score=56.19  Aligned_cols=73  Identities=10%  Similarity=0.164  Sum_probs=55.9

Q ss_pred             EEecC-CceecccccCCCcEEEEEEeeeEEEEEE-eCCC--------------------------------CeEEEEEec
Q 046186          339 GLLHR-NAMMVPHWNLNAHSIMYAISGSCHVQVV-DSYG--------------------------------RSVYDGEVR  384 (436)
Q Consensus       339 v~L~~-gam~~PHwh~~A~ei~yV~~G~grv~vv-~~~G--------------------------------~~~~~~~l~  384 (436)
                      +.+.| |+...|||.+. +-++..+.|+=++.+. .|.-                                ...++.+|+
T Consensus       145 ~~~gp~g~~~~~H~D~~-dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~  223 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLT  223 (342)
T ss_dssp             EEEECSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEEC
T ss_pred             EEEeCCCCCCCCeECCh-hcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEEC
Confidence            56666 89999999865 4788889999999999 5431                                113677899


Q ss_pred             CccEEEEcCCCEEEEEeC-CCcEEEEEEE
Q 046186          385 RGQIMVVPQNFAVVKRAG-GAEFEWISFK  412 (436)
Q Consensus       385 ~Gdv~vVP~g~~h~~~ag-~e~~~~l~f~  412 (436)
                      +|||+|||+||+|...+. ++...-++|.
T Consensus       224 pGD~LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          224 PGTMLYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             TTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             CCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence            999999999999999776 3444445554

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=95.96  E-value=0.026  Score=58.42  Aligned_cols=66  Identities=12%  Similarity=0.190  Sum_probs=52.2

Q ss_pred             EEEEecCCceec--ccccCCCcEEEEEEeeeEEEEEEeCCC---------------CeEEEEEecCccEEEEcCCCEEEE
Q 046186          337 ERGLLHRNAMMV--PHWNLNAHSIMYAISGSCHVQVVDSYG---------------RSVYDGEVRRGQIMVVPQNFAVVK  399 (436)
Q Consensus       337 ~~v~L~~gam~~--PHwh~~A~ei~yV~~G~grv~vv~~~G---------------~~~~~~~l~~Gdv~vVP~g~~h~~  399 (436)
                      ..+.+.++|-..  |||.+. +-++..+.|+=++.+..|.-               ...++..|++|||+|||+||+|+.
T Consensus       141 ~n~y~~~~g~~g~~~H~D~~-dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~  219 (442)
T 2xdv_A          141 SNVYITPAGSQGLPPHYDDV-EVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQA  219 (442)
T ss_dssp             EEEEEECTTCBCSCSEECSS-EEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEE
T ss_pred             cceEECCCCCCCccceECCc-ceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEE
Confidence            456777777665  999744 46888889999999988751               224678899999999999999998


Q ss_pred             EeCC
Q 046186          400 RAGG  403 (436)
Q Consensus       400 ~ag~  403 (436)
                      .+.+
T Consensus       220 ~s~~  223 (442)
T 2xdv_A          220 DTPA  223 (442)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            7654

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=95.96  E-value=0.067  Score=49.00  Aligned_cols=71  Identities=15%  Similarity=0.087  Sum_probs=54.6

Q ss_pred             cCCceeccccc--CCCcEEEEEEeeeEEEEEEeCCC-C----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          342 HRNAMMVPHWN--LNAHSIMYAISGSCHVQVVDSYG-R----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       342 ~~gam~~PHwh--~~A~ei~yV~~G~grv~vv~~~G-~----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+|-+|..|+|  ..-.++++|++|++..=+||-.- +    +.....|.+  +..++||.|++|-..+-+++++++-.-
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~~  136 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEEeC
Confidence            38999999999  55579999999999888888642 2    345555665  689999999999987766666655543

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=95.94  E-value=0.075  Score=48.61  Aligned_cols=70  Identities=13%  Similarity=0.090  Sum_probs=53.6

Q ss_pred             cCCceecccccC---CCcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNL---NAHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~---~A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|.   .-.++++|++|++..=+||-.-.     +.....|.+  +..++||.|++|-..+-+++.+++-.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEE
Confidence            389999999995   45799999999998888886522     245555665  58999999999998776666554443

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=95.82  E-value=0.058  Score=50.28  Aligned_cols=70  Identities=13%  Similarity=0.050  Sum_probs=54.5

Q ss_pred             ecCCceecccccCC---CcEEEEEEeeeEEEEEEeCCC-C----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEE
Q 046186          341 LHRNAMMVPHWNLN---AHSIMYAISGSCHVQVVDSYG-R----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWIS  410 (436)
Q Consensus       341 L~~gam~~PHwh~~---A~ei~yV~~G~grv~vv~~~G-~----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~  410 (436)
                      ..+|.+|..|+|..   -.++++|++|++..=+||-.- +    +....+|.+  +..++||.|++|-..+-+++.+++.
T Consensus        77 ~~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~a~~~Y  156 (205)
T 3ryk_A           77 AEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMY  156 (205)
T ss_dssp             SSTTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSSEEEEE
T ss_pred             CCCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCCEEEEE
Confidence            36899999999953   479999999999998998642 2    235556765  7999999999998866666666653

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=95.78  E-value=0.095  Score=48.53  Aligned_cols=88  Identities=13%  Similarity=0.001  Sum_probs=65.4

Q ss_pred             ceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeC-CCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPF-PGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~-pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      .+++..+...||...++|=|. +..+++|++|    +.....-. |+.                +.... .......+++
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G----~l~e~~y~~~~~----------------~~~~l-~~~~~~~l~~  127 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQG----NLKETLFDWPDK----------------KSNEM-IKKSERTLRE  127 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEES----CEEEEEECCCCS----------------SCCCC-CEEEEEEECT
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEee----eEEEEEeecCCC----------------Ccccc-cccceEEeCC
Confidence            478888999999999999999 8899999999    66655422 110                00000 0123589999


Q ss_pred             CcEEEe-CCCCeEEEeccC-CCcEEEEEEEecC
Q 046186          144 GDIFAL-PAGVAHWCYNEG-STPVVAVVLLDVA  174 (436)
Q Consensus       144 GDv~~i-PaG~~h~~~N~g-~e~l~~v~~~d~~  174 (436)
                      ||+.++ |.+..|.+.|.+ +++++-|=++...
T Consensus       128 G~v~~~~~~~giH~V~N~s~~~~avSlHvY~pp  160 (200)
T 3eln_A          128 NQCAYINDSIGLHRVENVSHTEPAVSLHLYSPP  160 (200)
T ss_dssp             TCEEEECTTTCEEEEECCCSSCCEEEEEEEESC
T ss_pred             CCEEEecCCCcEEEEECCCCCCCEEEEEeCCCC
Confidence            999999 888899999998 6888777666543

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=95.76  E-value=0.063  Score=50.72  Aligned_cols=73  Identities=11%  Similarity=0.115  Sum_probs=50.2

Q ss_pred             cceEEEEEecCCce--ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC---CCcEE
Q 046186          333 QLSAERGLLHRNAM--MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG---GAEFE  407 (436)
Q Consensus       333 ~ls~~~v~L~~gam--~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag---~e~~~  407 (436)
                      ++-+....|....-  +.+||| +..+++||++|++.  .++..+...+  .+.+||+++||.|-+|.....   +++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~G~~~--~i~~~~~~~~--~l~~g~l~~i~p~~~h~~~~~~~~~~~~~   80 (276)
T 3gbg_A            6 SFQTNVYRMSKFDTYIFNNLYI-NDYKMFWIDSGIAK--LIDKNCLVSY--EINSSSIILLKKNSIQRFSLTSLSDENIN   80 (276)
T ss_dssp             TEEEEEEEECTTCEEEEEEEEC-SSCEEEEESSSCEE--EEETTTTEEE--EECTTEEEEECTTCEEEEEEEECCSSCEE
T ss_pred             hhhhhhhhhhcccchhccHhhh-cceEEEEEecCceE--EECCccceeE--EEcCCCEEEEcCCCceeeccccCCCcceE
Confidence            34445556665543  578998 67899999999999  5553222124  499999999999999987433   24444


Q ss_pred             EEE
Q 046186          408 WIS  410 (436)
Q Consensus       408 ~l~  410 (436)
                      .+.
T Consensus        81 ~~~   83 (276)
T 3gbg_A           81 VSV   83 (276)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=95.67  E-value=0.068  Score=55.90  Aligned_cols=78  Identities=13%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             EEEEecCCcee--cccccCCCcEEEEEEeeeEEEEEEeCCC-------------------CeEEEEEecCccEEEEcCCC
Q 046186          337 ERGLLHRNAMM--VPHWNLNAHSIMYAISGSCHVQVVDSYG-------------------RSVYDGEVRRGQIMVVPQNF  395 (436)
Q Consensus       337 ~~v~L~~gam~--~PHwh~~A~ei~yV~~G~grv~vv~~~G-------------------~~~~~~~l~~Gdv~vVP~g~  395 (436)
                      +.+.+.|+|-.  .|||-+. +-++.-+.|+=++.+..|.-                   ...++..|++|||+|||+||
T Consensus       166 ~N~Y~tp~Gs~g~~pH~D~~-DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~  244 (489)
T 4diq_A          166 SNVYLTPPNSQGFAPHYDDI-EAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGF  244 (489)
T ss_dssp             EEEEEECSSBCCSCCBCCSS-EEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTC
T ss_pred             ceEEecCCCcccccCccCCc-ceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCC
Confidence            56788888865  4999875 35777888999999988641                   22467889999999999999


Q ss_pred             EEEEEeCC-CcEEEEEEEecC
Q 046186          396 AVVKRAGG-AEFEWISFKTND  415 (436)
Q Consensus       396 ~h~~~ag~-e~~~~l~f~~s~  415 (436)
                      +|...+.+ +.-.=+.|....
T Consensus       245 ~H~~~s~~~~~SlhlTi~~~~  265 (489)
T 4diq_A          245 IHQAECQDGVHSLHLTLSTYQ  265 (489)
T ss_dssp             EEEEEBCSSCCEEEEEEEECT
T ss_pred             ceEEEecCCCceEEEeecccC
Confidence            99997764 333335555544

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=95.66  E-value=0.07  Score=49.56  Aligned_cols=70  Identities=10%  Similarity=-0.016  Sum_probs=54.7

Q ss_pred             cCCceecccccC---CCcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNL---NAHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~---~A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|.   .-.++++|++|+..-=+||-.-.     +.+..+|.+  +..++||.|++|-..+-+++.+++-.
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~a~~~Y~  131 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVFL  131 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCCeEEEEe
Confidence            589999999995   35799999999999999996422     134445655  88999999999998777777776544

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=95.60  E-value=0.043  Score=47.34  Aligned_cols=73  Identities=12%  Similarity=0.004  Sum_probs=57.9

Q ss_pred             CCceeccc---c-cCCCcEEEEEEeeeEEEEEEeCCCC-e-EEEEEecCccEEEEcCCCEEEEEeCCCcEEE-EEEEecC
Q 046186          343 RNAMMVPH---W-NLNAHSIMYAISGSCHVQVVDSYGR-S-VYDGEVRRGQIMVVPQNFAVVKRAGGAEFEW-ISFKTND  415 (436)
Q Consensus       343 ~gam~~PH---w-h~~A~ei~yV~~G~grv~vv~~~G~-~-~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~-l~f~~s~  415 (436)
                      |+++++.|   . ++...+.+-|++|+.++-.++.+|+ . .-.--..+|+..+||.+.+|.+..-++++.| |.|+...
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f~leFyc~~  102 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAP  102 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEEECH
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCEEEEEEEEeCC
Confidence            67889999   4 7667789999999999999998886 1 1122367999999999999999875557777 8887543

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=95.55  E-value=0.12  Score=48.00  Aligned_cols=70  Identities=11%  Similarity=0.054  Sum_probs=53.8

Q ss_pred             cCCceecccccCC---CcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNLN---AHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~~---A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|..   -.++++|++|++..=+||-.-.     +.....|.+  +..++||.|++|-..+-+++.+++-.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYM  134 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCCeEEEEe
Confidence            4899999999954   4799999999998888886421     245556766  58999999999998666666654443

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=95.55  E-value=1.4  Score=42.63  Aligned_cols=72  Identities=13%  Similarity=0.178  Sum_probs=51.3

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC-C----CEEEEEeCCCcEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ-N----FAVVKRAGGAEFE  407 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~-g----~~h~~~ag~e~~~  407 (436)
                      ++.+..+.|.+|+-.+....+.-.-++||++|++.+     +|.   ...|.+||..++-. +    -...+.|. ++.+
T Consensus       166 ~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v-----~g~---~~~l~~~d~~~~~~~~~~~~~~l~l~a~-~~a~  236 (277)
T 2p17_A          166 PVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVF-----GAD---NIEGKAGQALFFSRHNRGEETELNVTAR-EKLR  236 (277)
T ss_dssp             CEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEE-----TTT---TEEEETTEEEEECCCCTTCEEEEEEEES-SSEE
T ss_pred             CCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEE-----CCC---ceEeCCCcEEEEcCCCCCccceEEEEeC-CCcE
Confidence            666778899999888766655556799999999766     232   12488999999986 6    44455564 4678


Q ss_pred             EEEEEe
Q 046186          408 WISFKT  413 (436)
Q Consensus       408 ~l~f~~  413 (436)
                      +|.|.-
T Consensus       237 ~Ll~~G  242 (277)
T 2p17_A          237 LLLYAG  242 (277)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            777653

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=95.43  E-value=0.13  Score=48.24  Aligned_cols=70  Identities=11%  Similarity=-0.024  Sum_probs=53.4

Q ss_pred             cCCceecccccCC---CcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNLN---AHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~~---A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|..   -+++++|++|++..=+||-.-.     +.....|.+  +..++||.|++|-..+-+++.+++-.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~~ly~  142 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  142 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCCeEEEEe
Confidence            4899999999965   4799999999998888886422     245555666  47999999999998766666544443

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=95.21  E-value=0.18  Score=47.51  Aligned_cols=70  Identities=14%  Similarity=0.001  Sum_probs=53.1

Q ss_pred             cCCceecccccCC---CcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNLN---AHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~~---A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|..   -.++++|++|++..=+||-.-.     +.....|.+  ...++||.|++|-..+-+++.+++-.
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~vly~  153 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  153 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCCEEEEEe
Confidence            4899999999964   4699999999998888886421     134555665  58999999999998666665554443

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=95.19  E-value=0.064  Score=53.65  Aligned_cols=78  Identities=12%  Similarity=0.085  Sum_probs=58.7

Q ss_pred             EEEec-CCceecccccCCCcEEEEEEeeeEEEEEEeCCC----------------------------------CeEEEEE
Q 046186          338 RGLLH-RNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG----------------------------------RSVYDGE  382 (436)
Q Consensus       338 ~v~L~-~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G----------------------------------~~~~~~~  382 (436)
                      .+-+. +|+...+|+.+. +-|..++.|+=++.++.|.-                                  ...+..+
T Consensus       186 ~l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  264 (349)
T 3d8c_A          186 LLLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  264 (349)
T ss_dssp             EEEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             eEEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEE
Confidence            35565 567889999887 68999999999999987741                                  0357889


Q ss_pred             ecCccEEEEcCCCEEEEEeCC-Cc-EEEEEEEecCC
Q 046186          383 VRRGQIMVVPQNFAVVKRAGG-AE-FEWISFKTNDN  416 (436)
Q Consensus       383 l~~Gdv~vVP~g~~h~~~ag~-e~-~~~l~f~~s~~  416 (436)
                      |++||++|||.||.|...+.+ ++ ..-+.|.....
T Consensus       265 l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~~~  300 (349)
T 3d8c_A          265 VGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGA  300 (349)
T ss_dssp             ECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEECC
T ss_pred             ECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEcCCC
Confidence            999999999999999986554 33 44466554443

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=94.82  E-value=0.081  Score=52.57  Aligned_cols=76  Identities=11%  Similarity=0.215  Sum_probs=55.4

Q ss_pred             EEEEec-CCceecccccCCCcEEEEEEeeeEEEEEEeCC--------CC---------------------eEEEEEecCc
Q 046186          337 ERGLLH-RNAMMVPHWNLNAHSIMYAISGSCHVQVVDSY--------GR---------------------SVYDGEVRRG  386 (436)
Q Consensus       337 ~~v~L~-~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~--------G~---------------------~~~~~~l~~G  386 (436)
                      ..+.+. +|+-..+|+.+. +-+..++.|+=++.++.|.        |.                     ..++.+|++|
T Consensus       169 s~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pG  247 (338)
T 3al5_A          169 SVFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAG  247 (338)
T ss_dssp             EEEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTT
T ss_pred             ceeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCC
Confidence            344454 456667799876 5788899999999999873        10                     1578899999


Q ss_pred             cEEEEcCCCEEEEEeCCCcEEEEE-EEec
Q 046186          387 QIMVVPQNFAVVKRAGGAEFEWIS-FKTN  414 (436)
Q Consensus       387 dv~vVP~g~~h~~~ag~e~~~~l~-f~~s  414 (436)
                      |++|||.||+|...+.+.. .-|+ ++.+
T Consensus       248 D~LyiP~gWwH~v~~l~~s-isvn~~~~~  275 (338)
T 3al5_A          248 DVLFIPALWFHNVISEEFG-VGVNIFWKH  275 (338)
T ss_dssp             CEEEECTTCEEEEEESSCE-EEEEEEECS
T ss_pred             CEEEECCCCeEEEeeCCCE-EEEEEEecC
Confidence            9999999999998666443 3444 4444

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=94.57  E-value=0.16  Score=47.06  Aligned_cols=113  Identities=12%  Similarity=-0.019  Sum_probs=71.4

Q ss_pred             cccccccCCCceeecCCcE-EEEeCCC-C-----cc-c-c-ccceEEEEEEecCCceecCeeecCCceEEEEe-cccceE
Q 046186           33 INNLEALEPNNRVECEAGV-VETWDPG-H-----EQ-F-Q-CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQ-AYTYRR  101 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~-~e~~~~~-~-----p~-l-~-~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~-G~~~~~  101 (436)
                      +..+...+|. ++.-+-|. +|.|..+ +     +. + . .. +......-.+|.+...|+|.-.++++|++ |    +
T Consensus        18 I~gv~ii~~~-~~~D~RG~f~e~f~~~~~~~~g~~~~F~~~~i-~Q~n~S~s~~GvlRGlH~h~q~Klv~~~~~G----~   91 (197)
T 1nxm_A           18 IPGMLEFDIP-VHGDNRGWFKENFQKEKMLPLGFPESFFAEGK-LQNNVSFSRKNVLRGLHAEPWDKYISVADGG----K   91 (197)
T ss_dssp             STTCEEEECC-EEEETTEEEEEEEEHHHHTTTTCCGGGGTTCC-CEEEEEEEETTBEEEEEECSSCEEEEECSSC----C
T ss_pred             CCCEEEEECc-eEeeCCcCEEEEechHHHHHcCCCcccccCce-EEEEEEECCCCCcceeeecccceEEEEcCCC----E
Confidence            4445556665 45566776 4766532 1     10 2 0 00 12222233689999999999889999999 9    7


Q ss_pred             EEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          102 GSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       102 g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      ...-+|+-....||.                  .-....|..+..++||+|++|-+++.++. .+++..
T Consensus        92 v~dV~VDlR~SpTfg------------------~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~y~  141 (197)
T 1nxm_A           92 VLGTWVDLREGETFG------------------NTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSYL  141 (197)
T ss_dssp             EEEEEEECBSSTTTT------------------CEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             EEEEEEECCCCCCCC------------------eEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEEEE
Confidence            666666553222431                  11246777799999999999999998765 554443

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=94.48  E-value=0.075  Score=48.69  Aligned_cols=90  Identities=11%  Similarity=0.048  Sum_probs=53.0

Q ss_pred             EEEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCC-cccCCCCCCCCccC-------Cc---ccccccc
Q 046186           69 VVRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPE-TYQSPQQGGFGESA-------GR---SQQDSHQ  136 (436)
Q Consensus        69 ~~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e-t~~~~~~~~~~~~~-------~~---~~~d~~~  136 (436)
                      ...+-|.+.|...| |+-+..-+..++.|    +=+.-+..|.... .|-.........+.       -.   +..+..-
T Consensus       125 ~~~~wiG~~gs~t~~H~D~~~n~~~qv~G----~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~  200 (235)
T 4gjz_A          125 TINAWFGPQGTISPLHQDPQQNFLVQVMG----RKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPF  200 (235)
T ss_dssp             EEEEEEECTTCEEEEECCSSEEEEEEEES----CEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCC
T ss_pred             ceEEEEeCCCCCceeeeccccceEEEEee----eEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCc
Confidence            34456677665555 55558889999999    8888887775321 11110000000000       00   0011111


Q ss_pred             eeeeeccCcEEEeCCCCeEEEeccCC
Q 046186          137 KIRRFRQGDIFALPAGVAHWCYNEGS  162 (436)
Q Consensus       137 k~~~l~~GDv~~iPaG~~h~~~N~g~  162 (436)
                      -...|++||+++||+|..|...|.++
T Consensus       201 ~~~~l~pGD~LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          201 LSCILSPGEILFIPVKYWHYVRALDL  226 (235)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEESSS
T ss_pred             EEEEECCCCEEEeCCCCcEEEEECCC
Confidence            24689999999999999999999864

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=94.45  E-value=0.26  Score=49.15  Aligned_cols=95  Identities=12%  Similarity=0.145  Sum_probs=55.7

Q ss_pred             EEecC-CceecCeeecCCceEEEEecccceEEEEEee-CCCCCC-ccc--CCCCCCCC----ccCCccc---ccccceee
Q 046186           72 HTIRQ-KGLLLPQFSNSPQLVYILQAYTYRRGSHGDP-FPGYPE-TYQ--SPQQGGFG----ESAGRSQ---QDSHQKIR  139 (436)
Q Consensus        72 ~~i~p-g~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v-~pg~~e-t~~--~~~~~~~~----~~~~~~~---~d~~~k~~  139 (436)
                      +-+.| |+-+.|||-+..-++..+.|    +=++-+. .|.... .+.  ........    +.--++.   ........
T Consensus       145 ~~~gp~g~~~~~H~D~~dnfl~Qv~G----~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  220 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAYTNLIFQIQG----EKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIV  220 (342)
T ss_dssp             EEEECSSCCCCSEECSSEEEEEEEES----CEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEE
T ss_pred             EEEeCCCCCCCCeECChhcEEEEEEE----EEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEE
Confidence            45555 77899999878888888889    7677766 443211 111  00000000    0000000   00122357


Q ss_pred             eeccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          140 RFRQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       140 ~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      .|++||+++||+|..|+..+.+++...-+++
T Consensus       221 ~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi  251 (342)
T 1vrb_A          221 NLTPGTMLYLPRGLWHSTKSDQATLALNITF  251 (342)
T ss_dssp             EECTTCEEEECTTCEEEEECSSCEEEEEEEE
T ss_pred             EECCCcEEEeCCCccEEEEECCCCceEEEEE
Confidence            8999999999999999999986555554543

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=94.44  E-value=0.26  Score=46.03  Aligned_cols=86  Identities=15%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeC-CCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPF-PGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~-pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .+++..+...||--.++|=|.+..++.|++|    .....+-. +..                +. . ....+...+.+|
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~swg~~~Vl~G----~l~e~~y~~~~~----------------g~-~-~~~~~~~~l~~G  129 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHRVWGLIGMLRG----AEYSQPYAFDAG----------------GR-P-HPSGARRRLEPG  129 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSSCEEEEEEES----CEEEEEEEECTT----------------SC-E-EECSCCEEECTT
T ss_pred             CEEEEEEEECCCCcCCCCCCCeeEEEEeeec----eEEEEEeeeCCC----------------CC-c-ccccceEEecCC
Confidence            4788899999999999999999999999999    55544321 100                00 0 001224789999


Q ss_pred             cEEEeCCC--CeEEEecc-CCCcEEEEEEEec
Q 046186          145 DIFALPAG--VAHWCYNE-GSTPVVAVVLLDV  173 (436)
Q Consensus       145 Dv~~iPaG--~~h~~~N~-g~e~l~~v~~~d~  173 (436)
                      |+++++++  ..|-+.|. ++++++-|=++..
T Consensus       130 ~v~~~~p~~g~IH~V~N~~~d~~avSLHvYg~  161 (211)
T 3uss_A          130 EVEALSPRIGDVHQVSNAFSDRTSISIHVYGA  161 (211)
T ss_dssp             CEEEEBTTTBCCEEEEESCSSSCEEEEEEESS
T ss_pred             CEEEECCCCCCEEEEccCCCCCCEEEEEEcCC
Confidence            99999987  89999998 4788877666543

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=93.96  E-value=0.078  Score=51.92  Aligned_cols=88  Identities=16%  Similarity=0.187  Sum_probs=56.1

Q ss_pred             cccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           63 QCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        63 ~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      +|-.+..+|+.+.||+.+.||--+ -++.+...|  +.|..+.++.  .|..+               +. .......++
T Consensus        87 ~~~~l~~vRlrL~PG~~I~~HrD~-~~l~~~~~~--~~RlHIPL~T--np~~~---------------f~-vdg~~~~m~  145 (290)
T 1e5r_A           87 DGTHLQMARSRNLKNAIVIPHRDF-VELDREVDR--YFRTFMVLED--SPLAF---------------HS-NEDTVIHMR  145 (290)
T ss_dssp             CSSSEEEEEEEEEESEEEEEECCC---------C--BCCEEEECSC--CTTEE---------------EE-ETTEEECCC
T ss_pred             ccchhheEEEEeCCCCEeeCccCc-cccccccCC--ceEEEeeEec--CCCcE---------------EE-ECCEEEecC
Confidence            454558888899999999999543 344444567  2255566554  23211               11 124578999


Q ss_pred             cCcEEEeCCCCeEEEeccCCC-cEEEEEEEec
Q 046186          143 QGDIFALPAGVAHWCYNEGST-PVVAVVLLDV  173 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e-~l~~v~~~d~  173 (436)
                      +|++|++-...+||..|.|++ .+.++  +|.
T Consensus       146 ~GE~w~~d~~~~H~v~N~g~~~RIhLv--~D~  175 (290)
T 1e5r_A          146 PGEIWFLDAATVHSAVNFSEISRQSLC--VDF  175 (290)
T ss_dssp             TTEEEECCTTSCEEEEESSSSCCCEEE--EEE
T ss_pred             CCCEEEEcCCCeeEEEcCCCCCeEEEE--EEe
Confidence            999999999999999999985 44443  565

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=93.89  E-value=0.66  Score=43.22  Aligned_cols=80  Identities=11%  Similarity=-0.040  Sum_probs=62.7

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeC--CCCeE--E-EEEecCccEEEEcCC--CEEEE-EeC-C
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDS--YGRSV--Y-DGEVRRGQIMVVPQN--FAVVK-RAG-G  403 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~--~G~~~--~-~~~l~~Gdv~vVP~g--~~h~~-~ag-~  403 (436)
                      .+++..+...||.-.++|=|. ++-++.|++|..+.+++..  +|...  - ...+.+||+.+++..  ..|-+ |++ +
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d  150 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSD  150 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCC
Confidence            577788999999999999999 8999999999999999763  34311  1 256999999999987  89988 785 4


Q ss_pred             CcEEEEEEEe
Q 046186          404 AEFEWISFKT  413 (436)
Q Consensus       404 e~~~~l~f~~  413 (436)
                      +.+.-|=++.
T Consensus       151 ~~avSLHvYg  160 (211)
T 3uss_A          151 RTSISIHVYG  160 (211)
T ss_dssp             SCEEEEEEES
T ss_pred             CCEEEEEEcC
Confidence            6555554443

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=93.74  E-value=0.24  Score=49.40  Aligned_cols=77  Identities=8%  Similarity=-0.056  Sum_probs=57.3

Q ss_pred             EEecC-CceecccccCCCc-EEEEEEeeeEEEEEEeCCCC--------------------------------------eE
Q 046186          339 GLLHR-NAMMVPHWNLNAH-SIMYAISGSCHVQVVDSYGR--------------------------------------SV  378 (436)
Q Consensus       339 v~L~~-gam~~PHwh~~A~-ei~yV~~G~grv~vv~~~G~--------------------------------------~~  378 (436)
                      +-+.+ |+....|+++..+ -|..++.|+=++.++.|+-.                                      +.
T Consensus       176 ~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~  255 (336)
T 3k2o_A          176 FVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKP  255 (336)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGCC
T ss_pred             EEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCce
Confidence            44544 6778899999864 79999999999999987410                                      12


Q ss_pred             EEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecC
Q 046186          379 YDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTND  415 (436)
Q Consensus       379 ~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~  415 (436)
                      +...+++||+++||.||.|...+.+..+.+=..+.+.
T Consensus       256 ~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~  292 (336)
T 3k2o_A          256 LEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASS  292 (336)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCT
T ss_pred             EEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCc
Confidence            5678999999999999999986665555443333343

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=93.53  E-value=0.64  Score=42.44  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=67.5

Q ss_pred             cccccccCCCceeecCCcEE-EEeCCC-Ccc--ccccceEEEEEEecCCceecCeee--c-CCceEEEEecccceEEEEE
Q 046186           33 INNLEALEPNNRVECEAGVV-ETWDPG-HEQ--FQCAGVAVVRHTIRQKGLLLPQFS--N-SPQLVYILQAYTYRRGSHG  105 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~~-e~~~~~-~p~--l~~~gv~~~r~~i~pg~l~~Ph~h--~-a~ei~yV~~G~~~~~g~~g  105 (436)
                      +..+...+|. ++.-+-|.+ |.|... +..  +...=+-.....-.+|.+...|||  . ..++++|++|    +...-
T Consensus        11 i~gv~ii~~~-~~~D~RG~f~e~~~~~~~~~~g~~~~f~Q~n~S~s~~GvlRGlH~q~p~~q~klv~vv~G----~v~dV   85 (185)
T 1ep0_A           11 LDGAIIIEPE-VYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRG----EIFDV   85 (185)
T ss_dssp             STTCEEEEEC-EEEETTEEEECCCCHHHHHHTTCCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEES----EEEEE
T ss_pred             CCCeEEEeCC-eEecCCccEEEEeehhhHHhcCCCCCEEEEEEEeCcCCeEecceecCCccccEEEEEeCC----eEEEE
Confidence            3444455565 455666764 555532 111  000001122223348999999999  4 7899999999    87655


Q ss_pred             eeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          106 DPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       106 ~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      +|+-.- .-||.                  .-....|.+  +..++||+|++|-+.|.++. ++++..
T Consensus        86 ~VD~R~~SpTfg------------------~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  134 (185)
T 1ep0_A           86 AVDLRKNSDTYG------------------EWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  134 (185)
T ss_dssp             EEECCTTCTTTT------------------CEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             EEECCCCCCCCC------------------eEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEe
Confidence            565421 11221                  012355543  68999999999999999776 555443

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=93.50  E-value=0.44  Score=44.27  Aligned_cols=112  Identities=13%  Similarity=0.101  Sum_probs=68.0

Q ss_pred             cccccccCCCceeecCCcE-EEEeCCC-Ccccccc--ce-EEEE-EEecCCceecCeeec----CCceEEEEecccceEE
Q 046186           33 INNLEALEPNNRVECEAGV-VETWDPG-HEQFQCA--GV-AVVR-HTIRQKGLLLPQFSN----SPQLVYILQAYTYRRG  102 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~-~e~~~~~-~p~l~~~--gv-~~~r-~~i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g  102 (436)
                      +..+...+|. ++.-+-|. +|.|..+ +... +.  .+ -... ....+|.+...|||.    -.++++|++|    +.
T Consensus        32 I~gv~ii~p~-~~~D~RG~F~E~~~~~~f~~~-gi~~~f~Q~n~S~S~~~GvlRGlH~q~~p~~q~KlV~vv~G----~v  105 (205)
T 3ryk_A           32 FTDAKLLEPR-LFGDDRGFFTESYNKKVLETL-GVTHSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLIQVMQG----AI  105 (205)
T ss_dssp             TTTEEEEECC-EEEETTEEEEEEEEHHHHHHT-TCCCCCCEEEEEEESSTTBEEEEEEECTTSCCCEEEEEEES----EE
T ss_pred             CCCEEEEeCC-eEeeCCCCEEEEeehHHHHHc-CCCCCeeEEEEEEeCCCCcEeEeEecCCCCCceEEEEEeCC----eE
Confidence            4455556676 45556665 5777632 1110 00  11 1111 123689999999995    5799999999    87


Q ss_pred             EEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          103 SHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       103 ~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      ..-+|+-.- +.||.                  .-....|.+  +-.++||+|++|-+.|.++. .+++.
T Consensus       106 ~DV~VDlR~~SpTfg------------------~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-a~~~Y  156 (205)
T 3ryk_A          106 YDVIVDLRKDSPTFK------------------QWRGYILSADNHRQLLVPKGFAHGFCTLVPH-TIVMY  156 (205)
T ss_dssp             EEEEEECCTTSTTTT------------------CEEEEEEETTTCCEEEECTTEEEEEEECSSS-EEEEE
T ss_pred             EEEEEECCCCCCCCC------------------eEEEEEecCCCCCEEEeCCCceEEEEEcCCC-EEEEE
Confidence            666665421 11221                  011356654  78999999999999998865 44433

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=93.50  E-value=0.66  Score=42.29  Aligned_cols=113  Identities=16%  Similarity=0.083  Sum_probs=67.0

Q ss_pred             cccccccCCCceeecCCcE-EEEeCCC-Cccc---cccceEEEEEEecCCceecCeeec----CCceEEEEecccceEEE
Q 046186           33 INNLEALEPNNRVECEAGV-VETWDPG-HEQF---QCAGVAVVRHTIRQKGLLLPQFSN----SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~-~e~~~~~-~p~l---~~~gv~~~r~~i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g~  103 (436)
                      +..+...+|. ++.-+-|. +|.|... +...   ...=+-.....-.+|.+...|||.    ..++++|++|    +..
T Consensus         9 i~gv~ii~~~-~~~D~RG~f~e~~~~~~~~~~~g~~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G----~v~   83 (183)
T 1dzr_A            9 IPDVLILEPK-VFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVG----EVF   83 (183)
T ss_dssp             STTCEEEECC-EEEETTEEEEEEEEHHHHHHHHSSCCCCCEEEEEEEETTBEEEEEEECGGGCCCEEEEEEES----EEE
T ss_pred             CCCeEEEeCC-eEecCCcCEEEEeehhhHHhccCCCCCEEEEEEEeCCCCeeeeeEccCCCCCCcEEEEEeCC----eEE
Confidence            4445556665 45556676 4766532 1110   000012222223489999999993    5799999999    876


Q ss_pred             EEeeCCC-CCCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          104 HGDPFPG-YPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       104 ~g~v~pg-~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      .-+|+-. ...||.                  .-....|.+  +..++||+|++|-+++.++. .+++.
T Consensus        84 dV~VD~R~~SpTfg------------------~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (183)
T 1dzr_A           84 DVAVDIRKESPTFG------------------QWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEFLY  133 (183)
T ss_dssp             EEEEECCTTCTTTT------------------CEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             EEEEECCCCCCCCC------------------eEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            6666542 111231                  011345543  68999999999999998776 44443

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=93.49  E-value=5.9  Score=38.45  Aligned_cols=75  Identities=12%  Similarity=0.027  Sum_probs=50.0

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe-CCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA-GGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a-g~e~~~~l~f  411 (436)
                      .+.+..+.|.+|+-......+.-.-++||++|++.+.     |.. ....+.++.+++...|-...+.+ +.+++++|.+
T Consensus       168 ~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~-----g~~-~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LLl  241 (290)
T 1j1l_A          168 PTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG-----PDD-AQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  241 (290)
T ss_dssp             CEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES-----CTT-SCEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEEC-----Ccc-cceeccCceEEEecCCCEEEEEEcCCCCcEEEEE
Confidence            5566778899998886666555567999999998772     210 00236667777777776655543 3567787776


Q ss_pred             Ee
Q 046186          412 KT  413 (436)
Q Consensus       412 ~~  413 (436)
                      .-
T Consensus       242 ~G  243 (290)
T 1j1l_A          242 AG  243 (290)
T ss_dssp             EE
T ss_pred             Ec
Confidence            53

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=93.36  E-value=0.69  Score=42.17  Aligned_cols=114  Identities=15%  Similarity=0.050  Sum_probs=68.6

Q ss_pred             cccccccCCCceeecCCcE-EEEeCCC-Ccc---ccccceEEEEEEecCCceecCeee--c-CCceEEEEecccceEEEE
Q 046186           33 INNLEALEPNNRVECEAGV-VETWDPG-HEQ---FQCAGVAVVRHTIRQKGLLLPQFS--N-SPQLVYILQAYTYRRGSH  104 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~-~e~~~~~-~p~---l~~~gv~~~r~~i~pg~l~~Ph~h--~-a~ei~yV~~G~~~~~g~~  104 (436)
                      +..+...+|. ++.-+-|. +|.|... +..   +...=+-.....-.+|.+...|||  . ..++++|++|    +...
T Consensus        11 i~gv~ii~~~-~~~D~RG~f~e~~~~~~~~~~~g~~~~f~Q~n~S~s~~GvlRG~H~q~p~~q~Klv~vv~G----~v~d   85 (184)
T 2ixk_A           11 IPDVILFEPR-VFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATLG----EVFD   85 (184)
T ss_dssp             STTSEEEECC-EEEETTEEEEEEEEHHHHHHHHSSCCCCCEEEEEEEETTBEEEEEEESSSCCCEEEEEEES----EEEE
T ss_pred             CCCeEEEeCc-eEecCCccEEEEeehhhhHhhcCCCCCEEEEEEEeCCCCceeeEEeCCCCCcCEEEEEeCC----eEEE
Confidence            4455556665 45566676 4776532 111   000001222222348999999999  4 7899999999    8765


Q ss_pred             EeeCCC-CCCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          105 GDPFPG-YPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       105 g~v~pg-~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      -+|+-. .+.||.                  .-....|.+  +..++||+|++|-++|.++. ++++..
T Consensus        86 V~vD~R~~SpTfg------------------~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  135 (184)
T 2ixk_A           86 VAVDLRRGSPTFG------------------QWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             EEEECBTTSTTTT------------------CEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             EEEECCCCCCCCC------------------eEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEEe
Confidence            556542 111221                  012345543  68999999999999999776 555443

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=93.34  E-value=0.91  Score=39.63  Aligned_cols=97  Identities=11%  Similarity=-0.062  Sum_probs=61.1

Q ss_pred             eeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCC
Q 046186           44 RVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG  121 (436)
Q Consensus        44 ~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~  121 (436)
                      .+..+-|.+..... +.-.+.-. -........||....+|.|. ..+++++++|    +..+-+ +.|.          
T Consensus        12 ~i~D~RG~L~~~e~~~~ipf~ik-Rvy~~~~~~~g~~RG~H~Hk~~~q~li~l~G----s~~v~l-dDg~----------   75 (141)
T 2pa7_A           12 KIIDSRGSLVAIEENKNIPFSIK-RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNG----SCRVIL-DDGN----------   75 (141)
T ss_dssp             EEEETTEEEEEEETTTTSSSCCC-EEEEEESCCSSCCEEEEEESSCCEEEEEEES----CEEEEE-ECSS----------
T ss_pred             cEecCCCcEEEEeccCCCCCCcc-EEEEEEecCCCCEECcCcCCCceEEEEEEcc----EEEEEE-ECCc----------
Confidence            35556777654433 22222211 11222334588899999998 9999999999    887766 3221          


Q ss_pred             CCCccCCcccccccceeeeeccC-cEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          122 GFGESAGRSQQDSHQKIRRFRQG-DIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       122 ~~~~~~~~~~~d~~~k~~~l~~G-Dv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                                   ..+...|.+. -.+.||+|+-|-+.|-++. .+++.+
T Consensus        76 -------------~~~~~~L~~~~~gL~IppgvWh~~~~~s~~-avllvl  111 (141)
T 2pa7_A           76 -------------IIQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVL  111 (141)
T ss_dssp             -------------CEEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEE
T ss_pred             -------------EEEEEEECCCCcEEEeCCCEEEEEEEcCCC-eEEEEE
Confidence                         1234455443 4599999999999998765 554443

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=93.33  E-value=0.75  Score=42.69  Aligned_cols=113  Identities=11%  Similarity=0.065  Sum_probs=67.2

Q ss_pred             cccccccCCCceeecCCcEE-EEeCCC-Ccc---cc-ccceEEEEEEecCCceecCeeec----CCceEEEEecccceEE
Q 046186           33 INNLEALEPNNRVECEAGVV-ETWDPG-HEQ---FQ-CAGVAVVRHTIRQKGLLLPQFSN----SPQLVYILQAYTYRRG  102 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~~-e~~~~~-~p~---l~-~~gv~~~r~~i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g  102 (436)
                      +..+...+|. ++.-+-|.+ |.|... +..   +. ..=+-.....-.+|.+...|||.    ..++++|++|    +.
T Consensus         8 I~gv~ii~p~-~~~D~RG~f~e~~~~~~f~~~~g~~~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~Klv~vv~G----~v   82 (205)
T 1oi6_A            8 VDGAIEFTPR-VFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMSKRGVVRGIHYTVTPPGTAKYVYCARG----KA   82 (205)
T ss_dssp             STTCEEEECC-CEEETTEEEECSCBHHHHHHHHSSCCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEES----CE
T ss_pred             CCCeEEEeCC-eEecCCcCEEEEeehhhhHhhcCCCCCCEEEEEEEeCCCCeEeeeeccCCCCCCceEEEEeCC----EE
Confidence            3444555665 355566764 655432 111   10 00012222233589999999995    4899999999    87


Q ss_pred             EEEeeCCC-CCCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          103 SHGDPFPG-YPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       103 ~~g~v~pg-~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      ..-+|+-. ...||.                  .-....|.+  +..++||+|++|-++|.++. .+++.
T Consensus        83 ~dV~VDlR~~SpTfG------------------~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A           83 MDIVIDIRVGSPTFG------------------QWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             EEEEECCCBTCTTTT------------------CEEEEEECSSSCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             EEEEEECCCCCCCCC------------------eEEEEEecCCCCCEEEeCCCeeEEEEEccCC-eEEEE
Confidence            66666542 111331                  011355544  68999999999999998876 44443

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=93.19  E-value=0.37  Score=46.19  Aligned_cols=71  Identities=18%  Similarity=0.197  Sum_probs=55.1

Q ss_pred             EEEEEecCCceecCeeecCC-ceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEE
Q 046186           69 VVRHTIRQKGLLLPQFSNSP-QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIF  147 (436)
Q Consensus        69 ~~r~~i~pg~l~~Ph~h~a~-ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~  147 (436)
                      +...++.|+.-+.||-|..- .+.||++|    +....                           |+......+++|||-
T Consensus        66 ln~~~~~pg~gf~~HPHrg~EtvTyvl~G----~~~H~---------------------------DS~Gn~~~i~~GdvQ  114 (256)
T 2vec_A           66 LNQEVLAPGAAFQPRTYPKVDILNVILDG----EAEYR---------------------------DSEGNHVQASAGEAL  114 (256)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEEES----EEEEE---------------------------ETTSCEEEEETTEEE
T ss_pred             ccccccCCCCccCCcCCCCcEEEEEEEee----EEEEE---------------------------eCCCCEEEECCCeEE
Confidence            55678899988899999954 58899999    76665                           222335799999999


Q ss_pred             EeCC--CCeEEEeccCC-CcEEEEEE
Q 046186          148 ALPA--GVAHWCYNEGS-TPVVAVVL  170 (436)
Q Consensus       148 ~iPa--G~~h~~~N~g~-e~l~~v~~  170 (436)
                      ...|  |+.|.-+|..+ +++.++-+
T Consensus       115 ~MtAG~GI~HsE~n~~~~~~l~~lQl  140 (256)
T 2vec_A          115 LLSTQPGVSYSEHNLSKDKPLTRMQL  140 (256)
T ss_dssp             EECCCTTCCEEEEECCSSSCEEEEEE
T ss_pred             EEECCCCeEEEEEECCCCceEEEEEE
Confidence            9977  57999999754 67877755

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=93.01  E-value=0.7  Score=42.63  Aligned_cols=73  Identities=11%  Similarity=0.096  Sum_probs=51.3

Q ss_pred             ecCCceecCeeec----CCceEEEEecccceEEEEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeec--cCcE
Q 046186           74 IRQKGLLLPQFSN----SPQLVYILQAYTYRRGSHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFR--QGDI  146 (436)
Q Consensus        74 i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~--~GDv  146 (436)
                      -.+|.+...|||.    ..++++|++|    +...-+|+-.- +.||.                  .-....|.  .+..
T Consensus        72 s~~GvlRGlH~q~~p~~q~Klv~vv~G----~v~dV~VDlR~~SpTfG------------------~~~~v~Ls~en~~~  129 (196)
T 1wlt_A           72 SRKGVVRGLHYQRTPKEQGKIIFVPKG----RILDVAVDVRKSSPTFG------------------KYVKAELNEENHYM  129 (196)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEES----EEEEEEEECBTTSTTTT------------------CEEEEEEETTTCCE
T ss_pred             CCCCcceeEEccCCCCCCceEEEEeCC----EEEEEEEECCCCCCCCC------------------eEEEEEecCCCCCE
Confidence            3589999999996    4799999999    88666665421 11221                  01235665  4789


Q ss_pred             EEeCCCCeEEEeccCCCcEEEEE
Q 046186          147 FALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       147 ~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      ++||+|++|-++|.++. .+++.
T Consensus       130 L~IP~G~aHgf~~lsd~-a~~ly  151 (196)
T 1wlt_A          130 LWIPPGFAHGFQALEDS-IVIYF  151 (196)
T ss_dssp             EEECTTEEEEEEESSSE-EEEEE
T ss_pred             EEeCCCeEEEEEEcCCC-eEEEE
Confidence            99999999999998774 44443

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=92.40  E-value=1.5  Score=41.35  Aligned_cols=114  Identities=10%  Similarity=-0.043  Sum_probs=68.4

Q ss_pred             ccccccccCCCceeecCCcEE-EEeCCC-Ccc---ccccceEEEEEEecCCceecCeeec----CCceEEEEecccceEE
Q 046186           32 QINNLEALEPNNRVECEAGVV-ETWDPG-HEQ---FQCAGVAVVRHTIRQKGLLLPQFSN----SPQLVYILQAYTYRRG  102 (436)
Q Consensus        32 ~~~~l~a~eP~~~~~se~G~~-e~~~~~-~p~---l~~~gv~~~r~~i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g  102 (436)
                      .+..+...+|. ++.-+-|.+ |.|... +..   +...=+-.....-.+|.+...|||.    ..++++|++|    +.
T Consensus        27 ~I~gv~ii~p~-~~~D~RG~F~e~~~~~~~~~~~gi~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~KlV~vv~G----~v  101 (225)
T 1upi_A           27 DVPGAWEITPT-IHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVSSAGVLRGLHFAQLPPSQAKYVTCVSG----SV  101 (225)
T ss_dssp             SSTTEEEEECC-EEEETTEEEECSCCHHHHHHHHSSCCCCCEEEEEEECTTBEEEEEEECTTTCCCEEEEEEES----EE
T ss_pred             CCCCeEEEeCc-eEecCCcCEEEEeehhhHHHhcCCCCCeEEEEEEeCCCCeEeeeeccCCCCCcceEEEEeCC----eE
Confidence            35555566675 455666764 556532 111   1000012222333689999999996    4799999999    87


Q ss_pred             EEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          103 SHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       103 ~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      ..-+|+-.- +.||.                  .-....|.+  +..++||+|++|-++|.++. .+++.
T Consensus       102 ~dV~VDlR~~SpTfG------------------~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~vly  152 (225)
T 1upi_A          102 FDVVVDIREGSPTFG------------------RWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVMY  152 (225)
T ss_dssp             EEEEECCCBTCTTTT------------------CEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEEE
T ss_pred             EEEEEECCCCCCCCC------------------cEEEEEecCCCCcEEEeCCCeeEEEEEcCCC-EEEEE
Confidence            666665421 11221                  011355544  68999999999999999876 44443

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=92.22  E-value=0.83  Score=42.16  Aligned_cols=83  Identities=11%  Similarity=0.198  Sum_probs=60.8

Q ss_pred             EEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEE
Q 046186           68 AVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIF  147 (436)
Q Consensus        68 ~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~  147 (436)
                      .+....|.||+-+.||.-+.       .|.+  +..++++.|. ...+                .......+..++|..+
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~-------n~~l--R~HL~L~~p~-~~~~----------------i~V~~~~~~w~eGe~~  156 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPT-------NCRL--RMHLGLVIPK-EGCK----------------IRCANETKTWEEGKVL  156 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSC-------TTEE--EEEEEEECCS-SSEE----------------EEETTEEECCCBTCEE
T ss_pred             eEEEEEeCCCCCcCCeeCCC-------CCeE--EEEEEEEeCC-CCcE----------------EEECCEEEEeeCCcEE
Confidence            58889999999999999873       3421  6778888774 0000                0122457899999999


Q ss_pred             EeCCCCeEEEeccCCCcEEEEEEEecCCCC
Q 046186          148 ALPAGVAHWCYNEGSTPVVAVVLLDVANND  177 (436)
Q Consensus       148 ~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~  177 (436)
                      ++-....|+..|.++++ +++.++|.-.+.
T Consensus       157 ~fDds~~Hev~N~~d~~-RvvL~~D~~rPd  185 (197)
T 3rcq_A          157 IFDDSFEHEVWQDASSF-RLIFIVDVWHPE  185 (197)
T ss_dssp             EECTTSCEEEEECSSSC-EEEEEEEEECTT
T ss_pred             EEcCCeEEEEEECCCCC-EEEEEEeeeCCC
Confidence            99999999999998874 444567877664

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=92.18  E-value=0.3  Score=51.09  Aligned_cols=73  Identities=10%  Similarity=0.114  Sum_probs=55.6

Q ss_pred             cCCceecccccCCCc-EEEEEEeeeEEEEEEeCCC------------------------CeEEEEEecCccEEEEcCCCE
Q 046186          342 HRNAMMVPHWNLNAH-SIMYAISGSCHVQVVDSYG------------------------RSVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       342 ~~gam~~PHwh~~A~-ei~yV~~G~grv~vv~~~G------------------------~~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      .+|+....|..+..+ -|..++.|+=++-++-|.-                        ...+...+++||+++||.||.
T Consensus       274 ~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPsGWw  353 (488)
T 3kv5_D          274 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWI  353 (488)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeCCCce
Confidence            578899999999865 6889999999999998731                        124567899999999999999


Q ss_pred             EEEEeCCCcEEEEEEEec
Q 046186          397 VVKRAGGAEFEWISFKTN  414 (436)
Q Consensus       397 h~~~ag~e~~~~l~f~~s  414 (436)
                      |+..+-++.+.+=.-|.+
T Consensus       354 H~V~nledsIai~~NF~~  371 (488)
T 3kv5_D          354 HAVLTSQDCMAFGGNFLH  371 (488)
T ss_dssp             EEEEEEEEEEEEEEEECC
T ss_pred             EEeeCCCCeEEEccccCC
Confidence            998555444444333333

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=92.04  E-value=1.2  Score=41.66  Aligned_cols=113  Identities=11%  Similarity=0.010  Sum_probs=67.2

Q ss_pred             cccccccCCCceeecCCcEE-EEeCCC-Ccc---ccccceEEEEEEecCCceecCeeec----CCceEEEEecccceEEE
Q 046186           33 INNLEALEPNNRVECEAGVV-ETWDPG-HEQ---FQCAGVAVVRHTIRQKGLLLPQFSN----SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~~-e~~~~~-~p~---l~~~gv~~~r~~i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g~  103 (436)
                      +..+...+|. ++.-+-|.+ |.|... +..   +...=+-.....-.+|.+...|||.    ..++++|++|    +..
T Consensus        17 I~gv~ii~p~-~~~D~RG~F~e~~~~~~~~~~~gi~~~f~Q~n~S~s~~GvlRGlH~q~~p~~q~KlV~vv~G----~v~   91 (216)
T 2c0z_A           17 IEGVWEITPE-QRADPRGVFLDWYHVDRFAEAIGRPLRLAQANLSVSVRGVVRGIHFVDVPPGQAKYVTCVRG----AVF   91 (216)
T ss_dssp             STTEEEEECE-EEEETTEEEEECCCHHHHHHHHSSCCCCCEEEEEEEETTBEEEEEEECTTTCCCEEEEEEES----EEE
T ss_pred             CCCeEEEeCC-eEecCCcCEEEEeehhHHHHhcCCCCCEEEEEEEeCCCCcEEcCEecCCCCCcceEEEEeCC----eEE
Confidence            4455556664 455667764 666532 111   1000011222223589999999996    4899999999    876


Q ss_pred             EEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          104 HGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       104 ~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      .-+|+-.- +.||.                  .-....|.+  +..++||+|++|-++|.++. .+++.
T Consensus        92 dV~VDlR~~SpTfG------------------~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~~ly  141 (216)
T 2c0z_A           92 DVVVDLRVGSPTYG------------------CWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATLCY  141 (216)
T ss_dssp             EEEEECCBTCTTTT------------------CEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             EEEEECCCCCCCCC------------------eEEEEEecCCCCCEEEeCCCeeEEEEEcCCC-eEEEE
Confidence            55565421 11221                  011355544  57999999999999998876 44433

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=91.90  E-value=0.93  Score=41.97  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=68.6

Q ss_pred             cccccccCCCceeecCCcEE-EEeCCC-Cc-------cccccceEEEEEEecCCceecCeeec----CCceEEEEecccc
Q 046186           33 INNLEALEPNNRVECEAGVV-ETWDPG-HE-------QFQCAGVAVVRHTIRQKGLLLPQFSN----SPQLVYILQAYTY   99 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~~-e~~~~~-~p-------~l~~~gv~~~r~~i~pg~l~~Ph~h~----a~ei~yV~~G~~~   99 (436)
                      +..+...+|. ++.-+-|.+ |.|..+ +.       .+.-.+.+.    -.+|.+...||+.    ..++++|++|   
T Consensus         6 I~gv~ii~p~-~f~D~RG~F~e~~~~~~f~~~~G~~~~fvQ~n~S~----S~~GvlRGlH~q~~p~~q~KlV~~~~G---   77 (201)
T 4hn1_A            6 IEGAWSQEPV-IHSDHRGRSHEWFRGESFRQAFGHDFPVAQVNVAV----SHRGALRGINYTEIPPGQAKYSVCVRG---   77 (201)
T ss_dssp             STTEEEECCC-EEEETTEEEEEEEEHHHHHHHHSSCCCCCEEEEEE----ECTTBEEEEEEECSSSCCCEEEEEEES---
T ss_pred             CCCEEEEeCc-eEeeCCcCEEEeeeHHHHHHhhCCCCCeeEEEEEE----cCCCceEEEEecCCCCCceEEEEEeCC---
Confidence            4455566775 566677765 877642 11       111112222    2689999999984    6799999999   


Q ss_pred             eEEEEEeeCC--CCCCcccCCCCCCCCccCCcccccccceeeeec--cCcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          100 RRGSHGDPFP--GYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR--QGDIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       100 ~~g~~g~v~p--g~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~--~GDv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                       +...-+|+-  +.| ||.                  .-....|.  .+-.++||+|++|-+.+..+. .+++.
T Consensus        78 -~v~DV~VDlR~~Sp-TfG------------------~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~-a~~~Y  130 (201)
T 4hn1_A           78 -AGLDVVVDVRIGSP-TFG------------------RWEIVPMDAERNTAVYLTAGLGRAFLSLTDD-ATLVF  130 (201)
T ss_dssp             -EEEEEEECCCBTCT-TTT------------------CEEEEEEETTTCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             -eEEEEEEECCCCCC-CCC------------------eEEEEEecCCCCCEEEeCCcceEEEeecCCC-eEEEE
Confidence             776666654  111 221                  00124554  488999999999999998765 44443

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=91.79  E-value=0.67  Score=48.01  Aligned_cols=75  Identities=12%  Similarity=0.104  Sum_probs=56.7

Q ss_pred             cCCceecccccCCC-cEEEEEEeeeEEEEEEeCCC------------------------CeEEEEEecCccEEEEcCCCE
Q 046186          342 HRNAMMVPHWNLNA-HSIMYAISGSCHVQVVDSYG------------------------RSVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       342 ~~gam~~PHwh~~A-~ei~yV~~G~grv~vv~~~G------------------------~~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      .+|+....|+.+.+ +-|..++.|+=++-++.|.-                        ...+.-++++||+++||.||.
T Consensus       204 p~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGWw  283 (451)
T 2yu1_A          204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGWI  283 (451)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECTTCE
T ss_pred             cCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCCCce
Confidence            46788888999985 46889999999999998851                        124567799999999999999


Q ss_pred             EEEEeCCCcEEEE-EEEecCC
Q 046186          397 VVKRAGGAEFEWI-SFKTNDN  416 (436)
Q Consensus       397 h~~~ag~e~~~~l-~f~~s~~  416 (436)
                      |+..+.+..+.+- .|.++.|
T Consensus       284 H~V~nledsIait~NF~~~~n  304 (451)
T 2yu1_A          284 HAVYTPTDTLVFGGNFLHSFN  304 (451)
T ss_dssp             EEEECSSCEEEEEEEECCSSS
T ss_pred             EEEecCCCeEEEeeeeCCccc
Confidence            9996665555443 3443333

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=91.40  E-value=0.36  Score=48.76  Aligned_cols=69  Identities=12%  Similarity=0.178  Sum_probs=53.9

Q ss_pred             cCCceecccccCCCc-EEEEEEeeeEEEEEEeCCC------------------------CeEEEEEecCccEEEEcCCCE
Q 046186          342 HRNAMMVPHWNLNAH-SIMYAISGSCHVQVVDSYG------------------------RSVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       342 ~~gam~~PHwh~~A~-ei~yV~~G~grv~vv~~~G------------------------~~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      .+|+....|..+..+ -|..++.|+=++-++-|.-                        ...+.-.+++||+++||.||.
T Consensus       155 p~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIPsGWw  234 (371)
T 3k3o_A          155 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWI  234 (371)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeCCCCe
Confidence            467888899999876 5889999999999987641                        123667899999999999999


Q ss_pred             EEEEeCCCcEEEEE
Q 046186          397 VVKRAGGAEFEWIS  410 (436)
Q Consensus       397 h~~~ag~e~~~~l~  410 (436)
                      |+..+.++.+.+=.
T Consensus       235 H~V~nledSIai~~  248 (371)
T 3k3o_A          235 HAVLTPVDCLAFGG  248 (371)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             EEEecCCCeEEECC
Confidence            99866555554433

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=91.25  E-value=0.76  Score=47.43  Aligned_cols=80  Identities=14%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             EEEecCCcee--cCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEE
Q 046186           71 RHTIRQKGLL--LPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA  148 (436)
Q Consensus        71 r~~i~pg~l~--~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~  148 (436)
                      .+-+.|+|-.  .|||-+..-++..+.|    +=+..+..|..|-...++-.-      ..++. .......|++||+++
T Consensus       142 n~y~~~~g~~g~~~H~D~~dvf~~Qv~G----~Krw~l~~p~~pl~~~~s~d~------~~~~~-~~~~~~~L~pGD~LY  210 (442)
T 2xdv_A          142 NVYITPAGSQGLPPHYDDVEVFILQLEG----EKHWRLYHPTVPLAREYSVEA------EERIG-RPVHEFMLKPGDLLY  210 (442)
T ss_dssp             EEEEECTTCBCSCSEECSSEEEEEEEES----CEEEEEECCSSTTCSSCEECC------TTTSC-SCSEEEEECTTCEEE
T ss_pred             ceEECCCCCCCccceECCcceEEEEEEe----EEEEEEccCCCCccccCCCCc------hhhcC-CcceEEEECCCcEEE
Confidence            3455666643  5999778888888889    667776666422100000000      00000 112357899999999


Q ss_pred             eCCCCeEEEeccC
Q 046186          149 LPAGVAHWCYNEG  161 (436)
Q Consensus       149 iPaG~~h~~~N~g  161 (436)
                      ||+|..|+..+.+
T Consensus       211 iP~g~~H~~~s~~  223 (442)
T 2xdv_A          211 FPRGTIHQADTPA  223 (442)
T ss_dssp             ECTTCEEEEECCS
T ss_pred             ECCCceEEEEecC
Confidence            9999999998875

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=91.01  E-value=1.1  Score=46.86  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             EEEecCCce--ecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccc--ccceeeeeccCcE
Q 046186           71 RHTIRQKGL--LLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQD--SHQKIRRFRQGDI  146 (436)
Q Consensus        71 r~~i~pg~l--~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d--~~~k~~~l~~GDv  146 (436)
                      ..-+.|+|-  +.|||-+..-++.-+.|    +=+..+..|..+..+- +....    ..-...+  ..-....|++||+
T Consensus       167 N~Y~tp~Gs~g~~pH~D~~DvFllQv~G----~KrWrL~~P~~~~~~l-p~~~~----~~~~~~~~~~p~~e~~L~pGDv  237 (489)
T 4diq_A          167 NVYLTPPNSQGFAPHYDDIEAFVLQLEG----RKLWRVYRPRAPTEEL-ALTSS----PNFSQDDLGEPVLQTVLEPGDL  237 (489)
T ss_dssp             EEEEECSSBCCSCCBCCSSEEEEEEEEE----CEEEEEECCSSGGGTT-CSSCC----CCCCGGGCCCCSEEEEECTTCE
T ss_pred             eEEecCCCcccccCccCCcceEEEEEee----EEEEEEeCCCCccccC-CCccc----ccCCcccccCcceEEEECCCCE
Confidence            455666664  46999887777777777    5566665553221100 00000    0000000  1112578999999


Q ss_pred             EEeCCCCeEEEeccCCCc
Q 046186          147 FALPAGVAHWCYNEGSTP  164 (436)
Q Consensus       147 ~~iPaG~~h~~~N~g~e~  164 (436)
                      ++||+|..|+..+.+++.
T Consensus       238 LYiP~g~~H~~~s~~~~~  255 (489)
T 4diq_A          238 LYFPRGFIHQAECQDGVH  255 (489)
T ss_dssp             EEECTTCEEEEEBCSSCC
T ss_pred             EEECCCCceEEEecCCCc
Confidence            999999999999986543

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=90.48  E-value=0.94  Score=46.14  Aligned_cols=72  Identities=11%  Similarity=0.160  Sum_probs=54.2

Q ss_pred             EEEec-CCceecccccCCCc-EEEEEEeeeEEEEEEeCCC------------------------CeEEEEEecCccEEEE
Q 046186          338 RGLLH-RNAMMVPHWNLNAH-SIMYAISGSCHVQVVDSYG------------------------RSVYDGEVRRGQIMVV  391 (436)
Q Consensus       338 ~v~L~-~gam~~PHwh~~A~-ei~yV~~G~grv~vv~~~G------------------------~~~~~~~l~~Gdv~vV  391 (436)
                      .+-+. +|+....|+.+.++ -|..++.|+=++-++.|.-                        ...+...+++||+++|
T Consensus       178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfI  257 (397)
T 3kv9_A          178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFV  257 (397)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEE
T ss_pred             EEEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEe
Confidence            34554 46777779999865 6889999999999998741                        1235678999999999


Q ss_pred             cCCCEEEEEeCCCcEEEE
Q 046186          392 PQNFAVVKRAGGAEFEWI  409 (436)
Q Consensus       392 P~g~~h~~~ag~e~~~~l  409 (436)
                      |.||.|+..+-+..+.+=
T Consensus       258 PsGW~H~V~nledSIai~  275 (397)
T 3kv9_A          258 PTGWIHAVLTSQDCMAFG  275 (397)
T ss_dssp             CTTCEEEEEEEEEEEEEE
T ss_pred             CCCCeEEccCCcCeEEEC
Confidence            999999985544444443

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=90.30  E-value=1.2  Score=46.17  Aligned_cols=74  Identities=12%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             cCCceecccccCCCc-EEEEEEeeeEEEEEEeCCC------------------------CeEEEEEecCccEEEEcCCCE
Q 046186          342 HRNAMMVPHWNLNAH-SIMYAISGSCHVQVVDSYG------------------------RSVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       342 ~~gam~~PHwh~~A~-ei~yV~~G~grv~vv~~~G------------------------~~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      .+|+....|..+.++ -|..++.|+=+.-++-|.-                        ...+.-.+++||+++||.||.
T Consensus       239 ~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPsGWw  318 (447)
T 3kv4_A          239 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWI  318 (447)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecCCCCe
Confidence            467888899999865 6889999999999988741                        023567799999999999999


Q ss_pred             EEEEeCCCcEEEEE-EEecC
Q 046186          397 VVKRAGGAEFEWIS-FKTND  415 (436)
Q Consensus       397 h~~~ag~e~~~~l~-f~~s~  415 (436)
                      |+..+.++.+.+=. |.+..
T Consensus       319 H~V~nledsIai~~NF~~~~  338 (447)
T 3kv4_A          319 HAVLTPVDCLAFGGNFLHSL  338 (447)
T ss_dssp             EEEEESSCEEEEEEEECCST
T ss_pred             EEEecCCCEEEEcccccccc
Confidence            99976666555533 44433

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=90.05  E-value=1.2  Score=42.34  Aligned_cols=99  Identities=17%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEE--EEEeeCCCCCCcccCCCCCCCCccCCcccccccc------e
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRG--SHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQ------K  137 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g--~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~------k  137 (436)
                      -++--.+.+.||-..+.|+|..-+=-++.+|    =|  .+.+-.++-.+.+.+.        .-....|..+      .
T Consensus       105 ~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRg----GG~L~v~Ly~~~~~~~~~~~--------~v~V~~DG~~~~~~aG~  172 (246)
T 3kmh_A          105 CYAEKIMHVRDAQVTPMHFHWRKREDIINRG----GGNLIVELWNADSNEQTADS--------DITVVIDGCRQKHTAGS  172 (246)
T ss_dssp             CEEEEEEEECBTCEEEEEEESSCCEEEEEEE----ESCEEEEEEEBCTTSSBCCS--------CEEEEETTEEEEECTTC
T ss_pred             cceeeEeeccCCCCCCcccCCCccccEEecC----CCeEEEEEEecCCCccccCC--------CeEEecCCeEEEeCCCC
Confidence            4778889999999999999995444445555    12  4444333222111100        0000111111      2


Q ss_pred             eeeeccCcEEEeCCCCeEEEeccCCC-cEEEEEEEecCCCC
Q 046186          138 IRRFRQGDIFALPAGVAHWCYNEGST-PVVAVVLLDVANND  177 (436)
Q Consensus       138 ~~~l~~GDv~~iPaG~~h~~~N~g~e-~l~~v~~~d~~n~~  177 (436)
                      ...|.+|+.+-+|+|+-||+...+.. ++++ .=+.+.|.+
T Consensus       173 ~i~L~PGESiTl~Pg~~H~F~ae~g~G~vli-gEVSt~NDD  212 (246)
T 3kmh_A          173 QLRLSPGESICLPPGLYHSFWAEAGFGDVLV-GEVSSVNDD  212 (246)
T ss_dssp             EEEECTTCEEEECTTEEEEEEECTTSCCEEE-EEEEECCCT
T ss_pred             EEEECCCCeEecCCCCEEEEEecCCCccEEE-EEcccCcCC
Confidence            46899999999999999999986542 4544 434444443

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=89.77  E-value=2.7  Score=37.93  Aligned_cols=78  Identities=10%  Similarity=0.165  Sum_probs=57.6

Q ss_pred             ceEEEEEecCCceecccccC-CCcEEEEEEeeeE-EEEEEeCCCCe---EEEEEecCcc---EEEEcCCCEEEEEeCCCc
Q 046186          334 LSAERGLLHRNAMMVPHWNL-NAHSIMYAISGSC-HVQVVDSYGRS---VYDGEVRRGQ---IMVVPQNFAVVKRAGGAE  405 (436)
Q Consensus       334 ls~~~v~L~~gam~~PHwh~-~A~ei~yV~~G~g-rv~vv~~~G~~---~~~~~l~~Gd---v~vVP~g~~h~~~ag~e~  405 (436)
                      .++-+.-|.+|.  -=|||. .++|+-|...|.. ++.+++++|..   ++-.++.+|+   .+|||+|....-..  .+
T Consensus        53 ~TaIYfLL~~~~--~S~~HRv~sdEiW~~~~G~pL~l~~~~~dG~~~~~~LG~d~~~Ge~~pQ~vVP~G~WqaA~~--~~  128 (172)
T 3loi_A           53 LTMIYYLMQAGQ--PDPFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSILGNPLEHPEARHQVVVPRRVWFAQEV--DG  128 (172)
T ss_dssp             CEEEEEEEETTC--CEEEEECSSEEEEEEEEESCEEEEEECTTSCEEEEEESCTTTSTTCBSEEEECTTCEEEEEE--SS
T ss_pred             ceEEEEEEcCCC--CccCEEecCCEEEEEEcCCCEEEEEEcCCCceEEEEeCCCcccCCcceEEEECCCEEEEEEe--CC
Confidence            455666778887  457775 4789888888865 89999999863   3334567888   78999999876544  56


Q ss_pred             EEEEEEEecC
Q 046186          406 FEWISFKTND  415 (436)
Q Consensus       406 ~~~l~f~~s~  415 (436)
                      ..+|+...+.
T Consensus       129 ~~LVsctVaP  138 (172)
T 3loi_A          129 YCLASVLVAP  138 (172)
T ss_dssp             EEEEEEEEES
T ss_pred             cEEEEEEEcC
Confidence            7888877665

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=89.67  E-value=0.69  Score=47.07  Aligned_cols=69  Identities=10%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             cCCceecccccCCCc-EEEEEEeeeEEEEEEeCCCC------------------------eEEEEEecCccEEEEcCCCE
Q 046186          342 HRNAMMVPHWNLNAH-SIMYAISGSCHVQVVDSYGR------------------------SVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       342 ~~gam~~PHwh~~A~-ei~yV~~G~grv~vv~~~G~------------------------~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      .+|+....|..+.++ -|..++.|+=+.-++.|.-.                        .-+.-.+++||+++||.||.
T Consensus       182 p~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGWw  261 (392)
T 3pua_A          182 VKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWI  261 (392)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCce
Confidence            568889999999864 78999999999998877411                        23567899999999999999


Q ss_pred             EEEEeCCCcEEEEE
Q 046186          397 VVKRAGGAEFEWIS  410 (436)
Q Consensus       397 h~~~ag~e~~~~l~  410 (436)
                      |+..+.++.+.+=.
T Consensus       262 H~V~nledSIai~g  275 (392)
T 3pua_A          262 YATLTPVDCLAFAG  275 (392)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcC
Confidence            99865555555544

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=89.60  E-value=0.89  Score=45.25  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=56.8

Q ss_pred             EEecCC-ceecCeeecCCceEEEEecccceEEEEEeeCCCCCC-cccCCCCC-CCCcc-------CCc---cccccccee
Q 046186           72 HTIRQK-GLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPE-TYQSPQQG-GFGES-------AGR---SQQDSHQKI  138 (436)
Q Consensus        72 ~~i~pg-~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e-t~~~~~~~-~~~~~-------~~~---~~~d~~~k~  138 (436)
                      +-|.+. +...+|+-+.+-+..++.|    +=++-+..|.... -|..+... ...++       .-+   ++.+..-..
T Consensus       187 l~iG~~gs~t~~H~D~~~n~~~qv~G----~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~  262 (349)
T 3d8c_A          187 LLIGMEGNVTPAHYGEQQNFFAQIKG----YKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYE  262 (349)
T ss_dssp             EEEECTTCEEEEECCSEEEEEEEEES----CEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEE
T ss_pred             EEEECCCCCccceECChhcEEEEEec----eEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEE
Confidence            556544 5678888778899999999    7788777765321 11110000 00000       000   011112235


Q ss_pred             eeeccCcEEEeCCCCeEEEeccCC-CcEEEEEE
Q 046186          139 RRFRQGDIFALPAGVAHWCYNEGS-TPVVAVVL  170 (436)
Q Consensus       139 ~~l~~GDv~~iPaG~~h~~~N~g~-e~l~~v~~  170 (436)
                      ..|++||+++||+|.-|+..|.++ ...+.|.+
T Consensus       263 ~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~  295 (349)
T 3d8c_A          263 TVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  295 (349)
T ss_dssp             EEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             EEECCCCEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence            889999999999999999999874 44455544

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=88.96  E-value=0.75  Score=45.52  Aligned_cols=98  Identities=14%  Similarity=0.064  Sum_probs=56.1

Q ss_pred             eEEEEEEecCCc-eecCeeecCCceEEEEecccceEEEEEeeCCCCCC-cccCCC-----C-CCCCccCCccccccccee
Q 046186           67 VAVVRHTIRQKG-LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPE-TYQSPQ-----Q-GGFGESAGRSQQDSHQKI  138 (436)
Q Consensus        67 v~~~r~~i~pg~-l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e-t~~~~~-----~-~~~~~~~~~~~~d~~~k~  138 (436)
                      +....+-|.|.| -..+|+-+..-+..++.|    +=++-+..|.... -|....     . ....-..--++.+..-..
T Consensus       166 ~~~s~l~~g~~g~~~~~H~D~~~n~~~qv~G----~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~  241 (338)
T 3al5_A          166 FFSSVFRISSPGLQLWTHYDVMDNLLIQVTG----KKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYE  241 (338)
T ss_dssp             EEEEEEEEECTTCEEEEECCSSEEEEEECSS----CEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEE
T ss_pred             cccceeEECCCCCCccceECCcccEEEEEEE----EEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEE
Confidence            333344455554 567788778888889999    7777777664321 111000     0 000000000011111235


Q ss_pred             eeeccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          139 RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       139 ~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      ..|++||+++||+|..|+..|.+.  .+.|.+
T Consensus       242 ~~L~pGD~LyiP~gWwH~v~~l~~--sisvn~  271 (338)
T 3al5_A          242 CSLEAGDVLFIPALWFHNVISEEF--GVGVNI  271 (338)
T ss_dssp             EEECTTCEEEECTTCEEEEEESSC--EEEEEE
T ss_pred             EEECCCCEEEECCCCeEEEeeCCC--EEEEEE
Confidence            789999999999999999999853  444443

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=88.77  E-value=5.6  Score=35.19  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             CCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCC--CcEEEEEEeee-EEEEEEeCCCC---eEEEEEecCc
Q 046186          313 QGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLN--AHSIMYAISGS-CHVQVVDSYGR---SVYDGEVRRG  386 (436)
Q Consensus       313 ~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~--A~ei~yV~~G~-grv~vv~~~G~---~~~~~~l~~G  386 (436)
                      +.||+.++........-+. -.++-+.-|++|..  =|||..  |+|+-|...|. ..+.++.++|.   .++-.++.+|
T Consensus        20 PEGG~yrEt~Rs~~~~~R~-~~TaIYfLL~~g~~--S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~G   96 (154)
T 1znp_A           20 PEGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVR--SHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEG   96 (154)
T ss_dssp             TTSSEEEEEEECSSSTTTC-SCEEEEEEEESSCC--EEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTT
T ss_pred             CCCccEEEEEeCCCCCCCc-ceeEEEEEecCCCC--CcceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCcccC
Confidence            4788887765443222221 24444555777775  577765  88988888887 67778888874   2344456778


Q ss_pred             cE--EEEcCCCEEEEEeCCCcEEEEEEEecC
Q 046186          387 QI--MVVPQNFAVVKRAGGAEFEWISFKTND  415 (436)
Q Consensus       387 dv--~vVP~g~~h~~~ag~e~~~~l~f~~s~  415 (436)
                      ++  +|||+|....-... .+..+|+...+.
T Consensus        97 e~pQ~vVP~G~WqaA~~~-g~~~LVsCtVaP  126 (154)
T 1znp_A           97 ERPQVIVPANCWQSAESL-GDFTLVGCTVSP  126 (154)
T ss_dssp             EESEEEECTTCEEEEEES-SSEEEEEEEESS
T ss_pred             cccEEEEcCCEEEEeeEC-CCeEEEEEEecC
Confidence            75  89999998765332 467777776654

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=87.90  E-value=3.5  Score=39.39  Aligned_cols=73  Identities=11%  Similarity=0.172  Sum_probs=57.2

Q ss_pred             EEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCC--EEEE-EeCC-CcEEEEEEEe
Q 046186          338 RGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVK-RAGG-AEFEWISFKT  413 (436)
Q Consensus       338 ~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~--~h~~-~ag~-e~~~~l~f~~  413 (436)
                      ...+.||+=+.||=|.+-..|.||++|+..-+  |+-|+.   ..+++|||-+.-+|-  .|.. +..+ +.++++-+-.
T Consensus        68 ~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn~---~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlWi  142 (256)
T 2vec_A           68 QEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGNH---VQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWL  142 (256)
T ss_dssp             EEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSCE---EEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEEE
T ss_pred             ccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCCE---EEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEEE
Confidence            45678888889999988878999999986554  887876   458999999998775  6887 6554 6888887766


Q ss_pred             cC
Q 046186          414 ND  415 (436)
Q Consensus       414 s~  415 (436)
                      +.
T Consensus       143 ~l  144 (256)
T 2vec_A          143 DA  144 (256)
T ss_dssp             EC
T ss_pred             eC
Confidence            63

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=87.20  E-value=2  Score=42.66  Aligned_cols=90  Identities=10%  Similarity=-0.013  Sum_probs=53.2

Q ss_pred             EEEEecCCc-eecCeeecC--CceEEEEecccceEEEEEeeCCCCCC-cccCCCCCCCCc-cCC-----c---cc-----
Q 046186           70 VRHTIRQKG-LLLPQFSNS--PQLVYILQAYTYRRGSHGDPFPGYPE-TYQSPQQGGFGE-SAG-----R---SQ-----  131 (436)
Q Consensus        70 ~r~~i~pg~-l~~Ph~h~a--~ei~yV~~G~~~~~g~~g~v~pg~~e-t~~~~~~~~~~~-~~~-----~---~~-----  131 (436)
                      ..+-|.+.| ....|+.+.  .-+..++.|    +=++-+..|..+. .|.-+...+..+ .+.     .   +.     
T Consensus       174 ~~~~~G~~gs~t~~H~D~~~~~~~~~~v~G----~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~  249 (336)
T 3k2o_A          174 RWFVMGPPRSGTGIHIDPLGTSAWNALVQG----HKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTW  249 (336)
T ss_dssp             EEEEEECTTCEEEEECCGGGCEEEEEEEES----CEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTS
T ss_pred             eEEEECCCCccCCcccCCCccceeeEEEee----eEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcc
Confidence            345666654 567788773  369999999    7788888775432 121100000000 000     0   00     


Q ss_pred             -ccccceeeeeccCcEEEeCCCCeEEEeccCCC
Q 046186          132 -QDSHQKIRRFRQGDIFALPAGVAHWCYNEGST  163 (436)
Q Consensus       132 -~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e  163 (436)
                       ...+-....+++||+++||+|..|+..|.++.
T Consensus       250 p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~s  282 (336)
T 3k2o_A          250 PPEFKPLEILQKPGETVFVPGGWWHVVLNLDTT  282 (336)
T ss_dssp             CGGGCCEEEEECTTCEEEECTTCEEEEEESSCE
T ss_pred             cccCceEEEEECCCCEEEeCCCCcEEEecCCCe
Confidence             00111246799999999999999999998754

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=86.92  E-value=2.2  Score=34.78  Aligned_cols=72  Identities=13%  Similarity=0.071  Sum_probs=53.6

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      |--.....+.||-   -++...+.|+.-|++|..+|.+-+.+.    ..++++||.|.||++--.-+... +...++|.+
T Consensus        22 G~~~TvGVm~pGe---ytF~T~~~E~M~vvsG~~~V~lpg~~e----w~~~~aGesF~Vpans~F~l~v~-~~~~YlC~y   93 (94)
T 2oyz_A           22 GQDVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKRVGEAD----WTTYSSGESFDVEGNSSFELQVK-DATAYLCEY   93 (94)
T ss_dssp             TEEEEEEEECSEE---EEEEESSCEEEEEEESEEEEEETTCSS----CEEEETTCEEEECSSEEEEEEES-SCEEEEEEC
T ss_pred             CCCEEEEEEeceE---EEEcCCCeEEEEEEEeEEEEEcCCCCc----CEEECCCCEEEECCCCEEEEEEc-ccEeEEEEc
Confidence            3344556677763   567788999999999999999876432    23478999999999988766544 568888753

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=86.49  E-value=5.3  Score=38.50  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=54.8

Q ss_pred             cceEEEEEecCCcee---cccccCCC--c------EEEEE-Ee---eeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186          333 QLSAERGLLHRNAMM---VPHWNLNA--H------SIMYA-IS---GSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV  397 (436)
Q Consensus       333 ~ls~~~v~L~~gam~---~PHwh~~A--~------ei~yV-~~---G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h  397 (436)
                      .|-+..+ |+|||.-   +||-|...  .      |+-|. +.   |-+.=-|...+|.--....|+-||+++||.|+ |
T Consensus       152 ~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-H  229 (270)
T 2qjv_A          152 SLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-H  229 (270)
T ss_dssp             SCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-C
T ss_pred             eEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-C
Confidence            5667777 8899887   99999875  4      87776 33   45554555555543334669999999999999 8


Q ss_pred             EEEeCC-CcEEEEEEEec
Q 046186          398 VKRAGG-AEFEWISFKTN  414 (436)
Q Consensus       398 ~~~ag~-e~~~~l~f~~s  414 (436)
                      -..|.. -.+=||.+...
T Consensus       230 p~~a~pGy~~YylwvMaG  247 (270)
T 2qjv_A          230 PVATIAGYDNYYLNVMAG  247 (270)
T ss_dssp             CEEECTTCEEEEEEEEEC
T ss_pred             CCcCCCCcccEEEEEEEC
Confidence            865553 23445555544

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=86.33  E-value=1.9  Score=45.33  Aligned_cols=69  Identities=9%  Similarity=0.088  Sum_probs=53.5

Q ss_pred             cCCceecccccCCCc-EEEEEEeeeEEEEEEeCCC------------------------CeEEEEEecCccEEEEcCCCE
Q 046186          342 HRNAMMVPHWNLNAH-SIMYAISGSCHVQVVDSYG------------------------RSVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       342 ~~gam~~PHwh~~A~-ei~yV~~G~grv~vv~~~G------------------------~~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      ..|+....|..+.++ -|.+|++|+=+.-++-|.-                        ...+.-.+++||+++||.||.
T Consensus       304 ~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW~  383 (528)
T 3pur_A          304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWI  383 (528)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCCce
Confidence            567888999999865 7999999999998887741                        013456799999999999999


Q ss_pred             EEEEeCCCcEEEEE
Q 046186          397 VVKRAGGAEFEWIS  410 (436)
Q Consensus       397 h~~~ag~e~~~~l~  410 (436)
                      |+..+..+.+.+=.
T Consensus       384 HaV~tleDSIaigg  397 (528)
T 3pur_A          384 HAVLTPVDSLVFGG  397 (528)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             EEEecCCCeEEEcC
Confidence            99865555554433

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=85.73  E-value=4.4  Score=38.03  Aligned_cols=101  Identities=14%  Similarity=0.084  Sum_probs=65.3

Q ss_pred             CCCeEEEEeCCCCCCc-----cccccceEEEEEecCCceecccccC-CCcEEEEEEeeeE-EEEEEeCCCC---------
Q 046186          313 QGAGHITTLNSFNLPV-----LRWIQLSAERGLLHRNAMMVPHWNL-NAHSIMYAISGSC-HVQVVDSYGR---------  376 (436)
Q Consensus       313 ~~~G~~~~~~~~~~P~-----L~~l~ls~~~v~L~~gam~~PHwh~-~A~ei~yV~~G~g-rv~vv~~~G~---------  376 (436)
                      +.||+.++.......+     -..--.++-+.-|.+|..  =|||. .+.|+-+...|.. .+.+++++|.         
T Consensus        34 PEGG~yrEt~Rs~~~v~~~~~~~R~~~TaIYfLL~~g~~--S~~HRv~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~  111 (225)
T 3m3i_A           34 PEGGYYSEVVRSAHKVDNEEGNRRHAYTTIYFLCTPESP--SHLHRLCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQP  111 (225)
T ss_dssp             TTSSEEEEEEECSSEEECTTSCEEESCEEEEEEECSSSC--EEEEECSSEEEEEEEEESCEEEEEEESSSTTTTC-----
T ss_pred             CCCceEEEEEECCCcccCCCCCCcccceeEEEEecCCCC--cccEEecCCEEEEEECCCCEEEEEEcCCCcccccccccc
Confidence            4678777765443321     111224555667788884  58886 4788888888885 7889998882         


Q ss_pred             ------------------eE----EEEEecCcc--EEEEcCCCEEEE-EeCCC-----cEEEEEEEecC
Q 046186          377 ------------------SV----YDGEVRRGQ--IMVVPQNFAVVK-RAGGA-----EFEWISFKTND  415 (436)
Q Consensus       377 ------------------~~----~~~~l~~Gd--v~vVP~g~~h~~-~ag~e-----~~~~l~f~~s~  415 (436)
                                        ..    +-.++.+|+  .+|||.|....- ..+++     +..+|+...+.
T Consensus       112 ~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtVaP  180 (225)
T 3m3i_A          112 PAAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVSP  180 (225)
T ss_dssp             -------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEEES
T ss_pred             cccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEEcC
Confidence                              22    223345677  579999998665 33332     67788877665

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=85.69  E-value=2.5  Score=43.76  Aligned_cols=49  Identities=14%  Similarity=0.080  Sum_probs=34.1

Q ss_pred             EEecCCceecccccCCC-cEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEE
Q 046186          339 GLLHRNAMMVPHWNLNA-HSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAV  397 (436)
Q Consensus       339 v~L~~gam~~PHwh~~A-~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h  397 (436)
                      -...+++++.|.+|.|. +|+++.+.|.-...-          ..+.+|.+=+=|.+.||
T Consensus       348 w~v~e~TfrpPyyHrNv~SEfmgli~G~y~ak~----------~Gf~pGg~SLH~~~~pH  397 (471)
T 1eyb_A          348 WGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQ----------GGFLPGGGSLHSTMTPH  397 (471)
T ss_dssp             EECCSSSCCSCCCBCCSCEEEEEECCC------------------CCTTCEEEECTTCCB
T ss_pred             cCCCCCccCCCCCccchhhhhhhhccccccccc----------cCcCCCceeccCCCcCC
Confidence            36789999999999994 579999999743211          12677777777777776

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=85.69  E-value=2.3  Score=39.32  Aligned_cols=79  Identities=13%  Similarity=0.106  Sum_probs=53.9

Q ss_pred             EEEEEecCCceecccccCCCc-E-EEEEEe--eeEEEEEEeCCC-----------------CeEEEEEecCccEEEEcCC
Q 046186          336 AERGLLHRNAMMVPHWNLNAH-S-IMYAIS--GSCHVQVVDSYG-----------------RSVYDGEVRRGQIMVVPQN  394 (436)
Q Consensus       336 ~~~v~L~~gam~~PHwh~~A~-e-i~yV~~--G~grv~vv~~~G-----------------~~~~~~~l~~Gdv~vVP~g  394 (436)
                      +=...+.+|+...+|.|+++. . +.|+--  +.|.+.+.++..                 .....-.-++|+++++|..
T Consensus       105 ~W~~~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvlFpS~  184 (216)
T 2rg4_A          105 IWINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLWESW  184 (216)
T ss_dssp             EEEEEECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEEEETT
T ss_pred             EEEEEcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEecCCCCeEEEECCC
Confidence            335566899999999999874 3 445543  356777777631                 1122445789999999999


Q ss_pred             CEEEEE--eCCCcEEEEEEEec
Q 046186          395 FAVVKR--AGGAEFEWISFKTN  414 (436)
Q Consensus       395 ~~h~~~--ag~e~~~~l~f~~s  414 (436)
                      ++|...  .+++.=.-|+|...
T Consensus       185 l~H~V~p~~~~~~RiSIsFN~~  206 (216)
T 2rg4_A          185 LRHEVPMNMAEEDRISVSFNYA  206 (216)
T ss_dssp             SCEEECCCCSSSCEEEEEEEEE
T ss_pred             CEEeccCCCCCCCEEEEEEEee
Confidence            999983  35555555666544

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=85.64  E-value=2.8  Score=43.19  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=47.8

Q ss_pred             ceEEEEEEec--CCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee-eeec
Q 046186           66 GVAVVRHTIR--QKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI-RRFR  142 (436)
Q Consensus        66 gv~~~r~~i~--pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~-~~l~  142 (436)
                      ..++.++++.  +++-...--.+++.|+.|++|    +|++..  .+                        .... ..|+
T Consensus       356 eF~v~~~~~~~~~~~~~~~~~~~~~~illv~~G----~g~i~~--~~------------------------~~~~~~~l~  405 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNG----KGTIQI--TG------------------------DDSTKQKID  405 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCCSSCEEEEEEES----EEEEEE--TT------------------------CGGGCEEEE
T ss_pred             eEEEEEEEecCCCCceeEEecCCCcEEEEEEeC----eEEEEe--CC------------------------cccceEEec
Confidence            4678888887  443221112358899999999    999873  10                        0011 5899


Q ss_pred             cCcEEEeCCCCeEEEecc---CCCcEEEEE
Q 046186          143 QGDIFALPAGVAHWCYNE---GSTPVVAVV  169 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~---g~e~l~~v~  169 (436)
                      +||+++||++....+.+.   +++.+.++.
T Consensus       406 ~G~~~fvpa~~~~~i~g~~~~~~~~~~~~~  435 (440)
T 1pmi_A          406 TGYVFFVAPGSSIELTADSANQDQDFTTYR  435 (440)
T ss_dssp             TTCEEEECTTCCEEEEECSSCCSSCCEEEE
T ss_pred             cCCEEEEeCCCcEEEEEecccCCCcEEEEE
Confidence            999999999965555554   134455443

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=84.43  E-value=5.8  Score=33.22  Aligned_cols=69  Identities=22%  Similarity=0.317  Sum_probs=54.1

Q ss_pred             EEEEEecCCceec--ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          336 AERGLLHRNAMMV--PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       336 ~~~v~L~~gam~~--PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .....+.||   +  -++...+.|+.-|+.|..+|.+-+.+.    ..++++|+-|.||.+--.-+... +...++|-+
T Consensus        39 kTlGVm~PG---e~~YtF~T~~~E~MevvsG~l~V~Lpg~~e----W~~~~aGesF~VpanssF~lkv~-~~~~Y~C~y  109 (111)
T 3hqx_A           39 KTLGVILPT---EQPLTFETHVPERMEIISGECRVKIADSTE----SELFRAGQSFYVPGNSLFKIETD-EVLDYVCHL  109 (111)
T ss_dssp             EEEEEECCC---SSCEEEECSSCEEEEEEESEEEEEETTCSS----CEEEETTCEEEECTTCEEEEECS-SCEEEEEEE
T ss_pred             EEEEEEecc---ccceEEcCCCcEEEEEEEeEEEEEcCCccc----CEEeCCCCEEEECCCCcEEEEEC-cceeEEEEc
Confidence            455667787   4  678888999999999999999876542    23478999999999988766554 678888854

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=84.28  E-value=5.4  Score=38.48  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=53.7

Q ss_pred             ccccceEEEEEEecCCcee---cCeeecC---C------ceEEE-E---ecccceEEEEEeeCCCCCCcccCCCCCCCCc
Q 046186           62 FQCAGVAVVRHTIRQKGLL---LPQFSNS---P------QLVYI-L---QAYTYRRGSHGDPFPGYPETYQSPQQGGFGE  125 (436)
Q Consensus        62 l~~~gv~~~r~~i~pg~l~---~Ph~h~a---~------ei~yV-~---~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~  125 (436)
                      +.+..+-+..+ +.|+|..   +||.|+.   +      |++|- +   +|    .|. .++...-              
T Consensus       148 ~~a~~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~g----f~~-q~vyt~d--------------  207 (270)
T 2qjv_A          148 QLADSLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQG----FCL-QRVYTDD--------------  207 (270)
T ss_dssp             SCCSSCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTC----EEE-EEEECTT--------------
T ss_pred             CCcceEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCC----EEE-EEEeCCC--------------
Confidence            34445666655 8899975   9999993   6      88865 3   35    333 3332210              


Q ss_pred             cCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          126 SAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       126 ~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                          +   .-.....++-||++.+|.|. |-........+..+.+.-
T Consensus       208 ----~---~~de~~~V~~~d~VlvP~Gy-Hp~~a~pGy~~YylwvMa  246 (270)
T 2qjv_A          208 ----R---SLDECMAVYNRDVVXVPXGY-HPVATIAGYDNYYLNVMA  246 (270)
T ss_dssp             ----S---SSEEEEEEETTCEEEESSSB-CCEEECTTCEEEEEEEEE
T ss_pred             ----C---CCceEEEEECCCEEecCCCc-CCCcCCCCcccEEEEEEE
Confidence                0   01236899999999999999 986654344566666654

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=83.00  E-value=6.2  Score=37.23  Aligned_cols=72  Identities=11%  Similarity=0.191  Sum_probs=55.7

Q ss_pred             EEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCC--EEEE-EeCC-CcEEEEEEEe
Q 046186          338 RGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNF--AVVK-RAGG-AEFEWISFKT  413 (436)
Q Consensus       338 ~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~--~h~~-~ag~-e~~~~l~f~~  413 (436)
                      .-.+.||+=+.||=|.+=..|.||++|+..=  -|+-|+.   ..+++|||-+.-+|-  .|.. +..+ +.++++-+-.
T Consensus        45 ~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H--~DS~Gn~---~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv  119 (242)
T 1tq5_A           45 DDVIEAGQGFGTHPHKDMEILTYVLEGTVEH--QDSMGNK---EQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI  119 (242)
T ss_dssp             EEEECTTCEEEEEEECSCEEEEEEEESEEEE--EESSSCE---EEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE
T ss_pred             cceeCCCCcCCCcCCCCcEEEEEEEEeEEEE--EeCCCCc---EEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEE
Confidence            4567888888999998888899999998554  4887886   459999999997774  5777 5443 6788877655


Q ss_pred             c
Q 046186          414 N  414 (436)
Q Consensus       414 s  414 (436)
                      .
T Consensus       120 ~  120 (242)
T 1tq5_A          120 M  120 (242)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=81.82  E-value=6.2  Score=38.69  Aligned_cols=60  Identities=17%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             ceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC
Q 046186          334 LSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG  402 (436)
Q Consensus       334 ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag  402 (436)
                      +++.++.+..+.-.   .......|+.|++|++.+..   +|.. +  .|++||.|+||++..-+...|
T Consensus       251 F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~---~~~~-~--~l~~G~~~~vpa~~~~~~i~g  310 (319)
T 1qwr_A          251 FSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKY---EDKT-C--PLKKGDHFILPAQMPDFTIKG  310 (319)
T ss_dssp             CEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEE---TTEE-E--EEETTCEEEECTTCCCEEEEE
T ss_pred             EEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEE---CCEE-E--EEcCCcEEEEeCCCceEEEEe
Confidence            44555555533221   22356789999999999864   3332 3  599999999999875443333

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=81.74  E-value=3.7  Score=42.84  Aligned_cols=84  Identities=12%  Similarity=0.001  Sum_probs=49.9

Q ss_pred             EEEecCCc-eecCeeec--CCceEEEEecccceEEEEEeeCCCCCC--ccc---CCCCCCCCccCCcccccc--cceeee
Q 046186           71 RHTIRQKG-LLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPE--TYQ---SPQQGGFGESAGRSQQDS--HQKIRR  140 (436)
Q Consensus        71 r~~i~pg~-l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~e--t~~---~~~~~~~~~~~~~~~~d~--~~k~~~  140 (436)
                      .+-|.|.+ ....|+.+  ..-|..|+.|    +=+.-++.|....  .|.   .+..+.    + .-..+.  .-....
T Consensus       269 ~~~mG~~gS~T~~H~D~~~t~~w~~vv~G----~K~w~L~PPt~~~~~~y~~~~~~~~~~----~-~~~~~~~~~~~~~~  339 (488)
T 3kv5_D          269 YCLMGVQDSYTDFHIDFGGTSVWYHVLWG----EKIFYLIKPTDENLARYESWSSSVTQS----E-VFFGDKVDKCYKCV  339 (488)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEE----EEEEEEECCCHHHHHHHHHHHTCSSGG----G-SCGGGSSSCCEEEE
T ss_pred             EEEEcCCCCCCCeEECCCCCceeeeccCe----eEEEEEeCCcccccccccccccCCccc----h-hhhcccccceEEEe
Confidence            34555544 67777776  3357899999    8788777664211  111   000000    0 000010  112468


Q ss_pred             eccCcEEEeCCCCeEEEeccCCC
Q 046186          141 FRQGDIFALPAGVAHWCYNEGST  163 (436)
Q Consensus       141 l~~GDv~~iPaG~~h~~~N~g~e  163 (436)
                      +++||+++||+|..|+.+|..++
T Consensus       340 l~pGe~lfIPsGWwH~V~nleds  362 (488)
T 3kv5_D          340 VKQGHTLFVPTGWIHAVLTSQDC  362 (488)
T ss_dssp             EETTCEEEECTTCEEEEEEEEEE
T ss_pred             eCCCCEEEeCCCceEEeeCCCCe
Confidence            99999999999999999998543

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=81.57  E-value=2.4  Score=43.80  Aligned_cols=86  Identities=9%  Similarity=0.008  Sum_probs=50.0

Q ss_pred             EEEecCCc-eecCeeec--CCceEEEEecccceEEEEEeeCCCCCC--cccCCCCCCCCccCCcc-cccc--cceeeeec
Q 046186           71 RHTIRQKG-LLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPE--TYQSPQQGGFGESAGRS-QQDS--HQKIRRFR  142 (436)
Q Consensus        71 r~~i~pg~-l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~e--t~~~~~~~~~~~~~~~~-~~d~--~~k~~~l~  142 (436)
                      .+-|.|.+ ....|+-+  ..-+..|++|    +=+.-++.|....  .|+.-.....   .... ..+.  .-..-.++
T Consensus       234 ~~~mG~~gS~T~~HiD~~~ts~w~~vi~G----rK~w~L~PPt~~nl~~~~~~~~s~~---~~~~~~~~~~~~~~~v~l~  306 (447)
T 3kv4_A          234 YCLMSVRDSYTDFHIDFGGTSVWYHVLKG----EKIFYLIRPTNANLTLFECWSSSSN---QNEMFFGDQVDKCYKCSVK  306 (447)
T ss_dssp             EEEEECTTEEEEEECCGGGCEEEEEEEES----EEEEEEECCCHHHHHHHHHHHTCSS---GGGSCGGGGSSCCEEEEEE
T ss_pred             EEEEeCCCCCCCeeECCCCCceeEEEeee----EEEEEEeCCCcccccchhhcccCcc---hhhhhccccccceEEEEEC
Confidence            34555555 56667765  4458899999    8788777664211  0110000000   0000 0111  11246899


Q ss_pred             cCcEEEeCCCCeEEEeccCCC
Q 046186          143 QGDIFALPAGVAHWCYNEGST  163 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e  163 (436)
                      +||+++||+|..|+.+|..++
T Consensus       307 pGetlfIPsGWwH~V~nleds  327 (447)
T 3kv4_A          307 QGQTLFIPTGWIHAVLTPVDC  327 (447)
T ss_dssp             TTCEEEECTTCEEEEEESSCE
T ss_pred             CCcEEecCCCCeEEEecCCCE
Confidence            999999999999999998554

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=81.35  E-value=4.2  Score=42.04  Aligned_cols=90  Identities=13%  Similarity=0.066  Sum_probs=57.8

Q ss_pred             CeEEEEeCCCCCCccccccceEEEEEecCCce-ecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcC
Q 046186          315 AGHITTLNSFNLPVLRWIQLSAERGLLHRNAM-MVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ  393 (436)
Q Consensus       315 ~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam-~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~  393 (436)
                      -|..+.+...+...-.  |+++....... .| -.-..|..+.+++|+.+|.++++=.-  |.  ++  +++||+.|||+
T Consensus       140 ~Gl~tl~gngD~~~~~--G~aI~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEf--G~--L~--v~pgei~VIPR  210 (471)
T 1eyb_A          140 SGLHTLCGAGDIKSNN--GLAIHIFLCNT-SMENRCFYNSDGDFLIVPQKGNLLIYTEF--GK--ML--VQPNEICVIQR  210 (471)
T ss_dssp             TTEEEEEEESCGGGTC--CEEEEEEEECS-CCCSEEEEESSEEEEEEEEESCEEEEETT--EE--EE--ECTTEEEEECT
T ss_pred             cchhheeccCCccccc--ceEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEec--cc--EE--eccCCEEEECC
Confidence            3555555444443333  55554444433 56 34457777889999999999987332  32  34  89999999999


Q ss_pred             CCEEEEEeCCCcEEEEEEEec
Q 046186          394 NFAVVKRAGGAEFEWISFKTN  414 (436)
Q Consensus       394 g~~h~~~ag~e~~~~l~f~~s  414 (436)
                      |.-+.+.-.+ ....+.+.+.
T Consensus       211 Gi~frv~l~~-p~Rgyi~E~~  230 (471)
T 1eyb_A          211 GMRFSIDVFE-ETRGYILEVY  230 (471)
T ss_dssp             TCCEEEECSS-SEEEEEEEEE
T ss_pred             ccEEEEeeCC-CceEEEEEcc
Confidence            9998885544 5555444433

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=81.02  E-value=2.7  Score=42.81  Aligned_cols=86  Identities=13%  Similarity=-0.009  Sum_probs=50.6

Q ss_pred             EEEecCCc-eecCeeec--CCceEEEEecccceEEEEEeeCCCCCC--cccCCCCCCCCccCCcccccc--cceeeeecc
Q 046186           71 RHTIRQKG-LLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPE--TYQSPQQGGFGESAGRSQQDS--HQKIRRFRQ  143 (436)
Q Consensus        71 r~~i~pg~-l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~e--t~~~~~~~~~~~~~~~~~~d~--~~k~~~l~~  143 (436)
                      .+-|.|.+ ....|+.+  ..-+..+++|    +=+.-++.|....  .|.+-.... .+.+ .-..+.  .-....+++
T Consensus       178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~G----rK~w~L~PPt~~nl~ly~~~~~s~-~~~e-~~~~~~~~~~~~v~l~p  251 (397)
T 3kv9_A          178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWG----EKIFYLIKPTDENLARYESWSSSV-TQSE-VFFGDKVDKCYKCVVKQ  251 (397)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEE----EEEEEEECCCHHHHHHHHHHHTSG-GGGG-SCGGGGSSCCEEEEEET
T ss_pred             EEEEcCCCCCCCEEECCCCCceeeeecCc----eEEEEEeCCcccccccccccccCC-Ccch-hhhccccCceEEEEECC
Confidence            45565655 56668876  4458899999    8788777775321  111000000 0000 000110  112468999


Q ss_pred             CcEEEeCCCCeEEEeccCC
Q 046186          144 GDIFALPAGVAHWCYNEGS  162 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~  162 (436)
                      ||+++||+|..|+.+|..+
T Consensus       252 Ge~lfIPsGW~H~V~nled  270 (397)
T 3kv9_A          252 GHTLFVPTGWIHAVLTSQD  270 (397)
T ss_dssp             TCEEEECTTCEEEEEEEEE
T ss_pred             CCEEEeCCCCeEEccCCcC
Confidence            9999999999999999844

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=80.73  E-value=3.9  Score=42.24  Aligned_cols=83  Identities=22%  Similarity=0.165  Sum_probs=51.0

Q ss_pred             EEEecCCc-eecCeeec--CCceEEEEecccceEEEEEeeCCCCCC--ccc----CCCCCCCCccCCccccc--ccceee
Q 046186           71 RHTIRQKG-LLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPE--TYQ----SPQQGGFGESAGRSQQD--SHQKIR  139 (436)
Q Consensus        71 r~~i~pg~-l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~e--t~~----~~~~~~~~~~~~~~~~d--~~~k~~  139 (436)
                      .+-|.|.+ ....|+.+  +.-|..|+.|    +=+.-++.|....  .|.    +..+.      ..-..+  ..-..-
T Consensus       199 ~~~mGp~gS~T~~H~D~~~ts~w~avi~G----rK~w~L~PP~~~~~~~y~~~~~s~~q~------~~~~p~~~~~~~~v  268 (451)
T 2yu1_A          199 YCLMSVRGCYTDFHVDFGGTSVWYHIHQG----GKVFWLIPPTAHNLELYENWLLSGSQG------DIFLGDRVSDCQRI  268 (451)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEES----CEEEEEECCCHHHHHHHHHHHHTTCCS------SSCHHHHSSCCEEE
T ss_pred             EEEEccCCCCCCeEECCCCcchhhheecc----eEEEEEeCCCcccccccccccccccch------hhhhccccccceEE
Confidence            44565555 45557766  4468899999    7788777775321  010    10000      000111  012246


Q ss_pred             eeccCcEEEeCCCCeEEEeccCCC
Q 046186          140 RFRQGDIFALPAGVAHWCYNEGST  163 (436)
Q Consensus       140 ~l~~GDv~~iPaG~~h~~~N~g~e  163 (436)
                      .+++||+++||+|.-|..+|..++
T Consensus       269 ~l~pGE~LfIPsGWwH~V~nleds  292 (451)
T 2yu1_A          269 ELKQGYTFVIPSGWIHAVYTPTDT  292 (451)
T ss_dssp             EECTTCEEEECTTCEEEEECSSCE
T ss_pred             EECCCcEEEeCCCceEEEecCCCe
Confidence            789999999999999999998654

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=80.73  E-value=6  Score=38.06  Aligned_cols=70  Identities=13%  Similarity=0.110  Sum_probs=56.1

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      -|-+-.++.+.|+=-.+|-.|.++--+||++|    +..+|                                -.+|.+|
T Consensus        89 ~GaSTl~V~fpp~~~~P~Gi~~ad~E~fVL~G----~i~~G--------------------------------~~~l~~h  132 (303)
T 2qdr_A           89 SGASTSRVVLPPKFEAPSGIFTADLEIFVIKG----AIQLG--------------------------------EWQLNKH  132 (303)
T ss_dssp             TSCEEEEEEECTTCEECCBEESSCEEEEEEES----EEEET--------------------------------TEEECTT
T ss_pred             CCcceEEEEecCCCCCCCcccccceEEEEEEe----EEEeC--------------------------------CEEecCC
Confidence            46778899999999999999997777999999    76665                                2589999


Q ss_pred             cEEEeCCCCeE-EEeccCCCcEEEEEE
Q 046186          145 DIFALPAGVAH-WCYNEGSTPVVAVVL  170 (436)
Q Consensus       145 Dv~~iPaG~~h-~~~N~g~e~l~~v~~  170 (436)
                      +-+++|+|+.- .+.-.|++++.++.+
T Consensus       133 ~Y~f~PaGV~~~~~kv~~~~g~~iL~f  159 (303)
T 2qdr_A          133 SYSFIPAGVRIGSWKVLGGEEAEILWM  159 (303)
T ss_dssp             EEEEECTTCCBCCEEEETTSCEEEEEE
T ss_pred             ceEEecCCCccCceeecCCCCcEEEEE
Confidence            99999999842 223357788888765

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=80.61  E-value=3.7  Score=41.39  Aligned_cols=86  Identities=9%  Similarity=0.002  Sum_probs=49.9

Q ss_pred             EEEecCCc-eecCeeec--CCceEEEEecccceEEEEEeeCCCCCC--cccCCCCCCCCccCCc-ccccc--cceeeeec
Q 046186           71 RHTIRQKG-LLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPE--TYQSPQQGGFGESAGR-SQQDS--HQKIRRFR  142 (436)
Q Consensus        71 r~~i~pg~-l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~e--t~~~~~~~~~~~~~~~-~~~d~--~~k~~~l~  142 (436)
                      .+-|.|.| ....|+-+  +.-+..|++|    +=+.-++.|....  -|..-.....   ... -..+.  .-..-.++
T Consensus       150 ~l~mGp~gS~T~~HiD~~gts~w~~vv~G----rK~w~L~PPt~~nl~~y~~~~~s~~---~~e~~~~~~~~~~~ev~l~  222 (371)
T 3k3o_A          150 YCLMSVRDSYTDFHIDFGGTSVWYHVLKG----EKIFYLIRPTNANLTLFECWSSSSN---QNEMFFGDQVDKCYKCSVK  222 (371)
T ss_dssp             EEEEECTTEEEEEECCGGGCEEEEEEEEE----EEEEEEECCCHHHHHHHHHHHTSTT---GGGSCGGGTSSCCEEEEEE
T ss_pred             EEEEcCCCCCCCeEECCCCCceeEEEeee----EEEEEEECCCccccccccccccCCc---cchhhcccccCceEEEEEC
Confidence            34555555 56667766  3347789999    8788777664321  1110000000   000 01111  11247889


Q ss_pred             cCcEEEeCCCCeEEEeccCCC
Q 046186          143 QGDIFALPAGVAHWCYNEGST  163 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e  163 (436)
                      +||+++||+|..|+.+|..++
T Consensus       223 pGEtLfIPsGWwH~V~nledS  243 (371)
T 3k3o_A          223 QGQTLFIPTGWIHAVLTPVDC  243 (371)
T ss_dssp             TTCEEEECTTCEEEEEEEEEE
T ss_pred             CCcEEEeCCCCeEEEecCCCe
Confidence            999999999999999997443

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=80.13  E-value=5  Score=33.35  Aligned_cols=68  Identities=18%  Similarity=0.187  Sum_probs=51.0

Q ss_pred             EEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          336 AERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       336 ~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .....|.||   +-++...+.|+.-|+.|..+|.+-+.+    -..++++|+-|.||++--.-+... +...|+|.
T Consensus        38 kTlGVm~PG---eY~F~T~~~E~MevvsG~l~V~LpG~~----eW~~~~aGesF~VpanssF~lkv~-~~t~Y~Cs  105 (106)
T 3eo6_A           38 HSLTLLHPG---VYTLSSEVAETIRVLSGMAYYHAEGAN----DVQELHAGDSMVIPANQSYRLEVM-EPLDYLLS  105 (106)
T ss_dssp             EEEEEECSE---EEEECCSSCEEEEEEEEEEEEECTTCS----SCEEEETTCEEEECSSSCEEEEEE-EEEEEEEE
T ss_pred             EEEEEEeee---EEEecCCCcEEEEEEEeEEEEECCCCc----cCEEECCCCEEEECCCCcEEEEEC-ceEEEEEc
Confidence            455667777   567888999999999999999976543    223478999999999977665433 45666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	436
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	2e-88
d1fxza1	239	b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe	2e-85
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	1e-47
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	2e-08
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	1e-47
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	2e-09
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	1e-30
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	2e-09
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	3e-30
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	2e-14
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	9e-28
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	5e-22
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	5e-26
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	1e-14
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	1e-24
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	4e-16
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	3e-24
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	5e-18
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	1e-05
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	4e-24
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	3e-13
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	2e-21
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	9e-18
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	8e-20
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	1e-15
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	5e-05
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	0.002
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	0.001
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	0.002

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score =  267 bits (683), Expect = 2e-88
 Identities = 115/247 (46%), Positives = 154/247 (62%), Gaps = 19/247 (7%)

Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+CQ+NNL ALEP++RVE E G++ETW+  H + QCAGV V + T+ + GL LP +S  P
Sbjct: 1   NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYP 60

Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQ--GGFGESAGRSQQDSHQKIRRFRQGDI 146
           Q++ ++Q     +G+ G  FPG PET++ PQQ     G  + +  QDSHQKIR F +GD+
Sbjct: 61  QMIIVVQG----KGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDV 116

Query: 147 FALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEF----QQQRQ 202
             +P GV +W YN G  PVVA+ LLD +N +NQLD+NPR F+LAGNP  E     QQQ+Q
Sbjct: 117 LVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQ 176

Query: 203 QERFGGHQQ---------CNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRG 253
           Q+  GG +Q           +V  GF    LA++FN +E    +LRS  D R  IVTV G
Sbjct: 177 QKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG 236

Query: 254 QLQVARP 260
            L V  P
Sbjct: 237 GLSVISP 243

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score =  259 bits (662), Expect = 2e-85
 Identities = 102/244 (41%), Positives = 148/244 (60%), Gaps = 17/244 (6%)

Query: 29  NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSP 88
           N+CQI  L AL+P+NR+E E G++ETW+P ++ FQCAGVA+ R T+ +  L  P ++N P
Sbjct: 1   NECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGP 60

Query: 89  QLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA 148
           Q +YI Q     +G  G  +PG P T++ PQQ           QD HQKI  FR+GD+ A
Sbjct: 61  QEIYIQQG----KGIFGMIYPGCPSTFEEPQQP-QQRGQSSRPQDRHQKIYNFREGDLIA 115

Query: 149 LPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQ----- 203
           +P GVA W YN   TPVVAV ++D  + +NQLD+ PR+F+LAGN  QEF + +Q+     
Sbjct: 116 VPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ 175

Query: 204 -----ERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEK--DYRGAIVTVRGQLQ 256
                 +     +  ++  GF    L  AF+VD+++ + L+ E   + +GAIVTV+G L 
Sbjct: 176 SQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLS 235

Query: 257 VARP 260
           V +P
Sbjct: 236 VIKP 239

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score =  158 bits (402), Expect = 1e-47
 Identities = 73/144 (50%), Positives = 97/144 (67%), Gaps = 3/144 (2%)

Query: 288 GVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMM 347
           GVEE +CTMKL ENI  PS+AD Y   AG I+TLNS  LP LR   LSA+  +L+RN + 
Sbjct: 1   GVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIY 60

Query: 348 VPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFE 407
            PHWNLNA+S++Y   G   V+VV+  G +V+DGE+RRGQ++VVPQNF V ++ G    E
Sbjct: 61  SPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLE 120

Query: 408 WISFKTNDNAMISPLSGRTSVMRG 431
           ++ FKT+ NA+ S +     V R 
Sbjct: 121 YVVFKTHHNAVSSYI---KDVFRA 141

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 23/205 (11%), Positives = 58/205 (28%), Gaps = 61/205 (29%)

Query: 47  CEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQAYTYRRGSH 104
            +AG + T +       +  G++     + + G+  P +  N+  ++Y+ +         
Sbjct: 26  PKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRV---- 81

Query: 105 GDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTP 164
                                    + Q +       R+G +  +P              
Sbjct: 82  -----------------RVV-----NCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGL 119

Query: 165 VVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRIL 224
              V       + N +                                 +VF    + +L
Sbjct: 120 EYVVFK----THHNAVSSYI----------------------------KDVFRAIPSEVL 147

Query: 225 AEAFNVDERLVRRLRSEKDYRGAIV 249
           + ++N+ +  VR+L+ + +  G +V
Sbjct: 148 SNSYNLGQSQVRQLKYQGN-SGPLV 171

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score =  158 bits (402), Expect = 1e-47
 Identities = 70/139 (50%), Positives = 97/139 (69%)

Query: 293 MCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWN 352
           +CTM+LR NIG  S  DIY   AG +TT  S + P L W++LSAE G L +NAM VPH+N
Sbjct: 1   ICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYN 60

Query: 353 LNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK 412
           LNA+SI+YA++G   +QVV+  G  V+DGE++ G++++VPQNF V  R+    FE++SFK
Sbjct: 61  LNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFK 120

Query: 413 TNDNAMISPLSGRTSVMRG 431
           TND  MI  L+G  S++  
Sbjct: 121 TNDTPMIGTLAGANSLLNA 139

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 21/200 (10%), Positives = 51/200 (25%), Gaps = 57/200 (28%)

Query: 47  CEAGVVETWDPG-HEQFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQAYTYRRGSH 104
            +AG V T             ++    ++R+  + +P +  N+  ++Y L          
Sbjct: 21  PQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALI---- 76

Query: 105 GDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTP 164
                                  G    D        ++G +  +P        ++    
Sbjct: 77  -----------------QVVNCNGERVFD-----GELQEGRVLIVPQNFVVAARSQSDNF 114

Query: 165 VVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRIL 224
                  +           P    LAG                     N++       ++
Sbjct: 115 EYVSFKTN---------DTPMIGTLAGA--------------------NSLLNALPEEVI 145

Query: 225 AEAFNVDERLVRRLRSEKDY 244
              FN+  +  R++++   +
Sbjct: 146 QHTFNLKSQQARQIKNNNPF 165

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  113 bits (285), Expect = 3e-30
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 4/128 (3%)

Query: 308 ADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCH 367
            +  T     +T L+    P    + +S  R          PH +  A  I   + G   
Sbjct: 46  GNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELL 105

Query: 368 VQVVDS--YGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAE--FEWISFKTNDNAMISPLS 423
           V ++ S   G  +Y   VR G+  V+P+     +   G    +  +SF + +  ++    
Sbjct: 106 VGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPL 165

Query: 424 GRTSVMRG 431
                   
Sbjct: 166 TLFGSDPP 173

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 69.6 bits (170), Expect = 2e-14
 Identities = 27/179 (15%), Positives = 47/179 (26%), Gaps = 52/179 (29%)

Query: 63  QCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQG 121
              GV++ R      G   P     + ++  +++                          
Sbjct: 68  NTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLV--------------------- 106

Query: 122 GFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLD 181
           G     G     +    R  R G+ F +P G+ H+ +N G T    VV  +  N      
Sbjct: 107 GIL---GSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFV 163

Query: 182 RNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRS 240
                                                  T +L +A  V+  +V  L+S
Sbjct: 164 PLTL---------------------------FGSDPPIPTPVLTKALRVEAGVVELLKS 195

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score =  106 bits (266), Expect = 9e-28
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
           S+  IY+   G +  +     P LR + +      ++  A+ +PH+N  A  ++    G 
Sbjct: 14  SRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGE 73

Query: 366 CHVQVVD-------------SYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISF 411
            ++++V                    Y  E+    I V+P  + VV  A     F     
Sbjct: 74  ANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGI 133

Query: 412 KTNDNAMISPLSGRTSVMRG 431
              +N        + +V+  
Sbjct: 134 NAENNQRNFLAGSKDNVISQ 153

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 90.8 bits (225), Expect = 5e-22
 Identities = 26/198 (13%), Positives = 54/198 (27%), Gaps = 43/198 (21%)

Query: 48  EAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQAYTYRRGSHG 105
           + G +    P  + Q +   V +    + +  L LP F S +  ++ I +       +  
Sbjct: 22  KLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEG----EANIE 77

Query: 106 DPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPV 165
                  +  Q  ++            +  +      + DIF +PAG             
Sbjct: 78  LVGIKEQQQRQQQEE---------QPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNF 128

Query: 166 VAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILA 225
            A  +          + N R F                         +NV     +++  
Sbjct: 129 FAFGINA--------ENNQRNFLAGS--------------------KDNVISQIPSQVQE 160

Query: 226 EAFNVDERLVRRLRSEKD 243
            AF    + +  L   + 
Sbjct: 161 LAFPGSAKDIENLIKSQS 178

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score =  102 bits (255), Expect = 5e-26
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 52/225 (23%)

Query: 44  RVECEAG---VVETWDPGHEQFQC-AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTY 99
             + + G   V++ +D   ++ Q      +V    + + LLLPQ +++  L+ +      
Sbjct: 15  LFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSG--- 71

Query: 100 RRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYN 159
                    P     Y                             D   +PAG   +  N
Sbjct: 72  -SAILVLVKPDDRREYF------------------FLTSDNPIFSDHQKIPAGTIFYLVN 112

Query: 160 EG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCG 218
                 +  + L    N     +    +F L+    Q                  +    
Sbjct: 113 PDPKEDLRIIQLAMPVN-----NPQIHEFFLSSTEAQ-----------------QSYLQE 150

Query: 219 FDTRILAEAFNVDERLVRRL--RSEKDYRGAIVTV-RGQLQVARP 260
           F   IL  +FN     + R+    E    G IV +   Q++    
Sbjct: 151 FSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSK 195

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 16/132 (12%)

Query: 315 AGHITTLNSFNLPVLRWIQLSAERGLLH---RNAMMVPHWNLNAHSIMYAISGSCHVQVV 371
            GHI  L  F+    R   L   R +        +++P    +A  ++   SGS  + +V
Sbjct: 20  YGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLV 78

Query: 372 DSYGRSVY----DGEVRRGQIMVVPQN--FAVVKRAGGAEFEWISFKTNDNAM------I 419
               R  Y               +P    F +V      +   I      N        +
Sbjct: 79  KPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFL 138

Query: 420 SPLSGRTSVMRG 431
           S    + S ++ 
Sbjct: 139 SSTEAQQSYLQE 150

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 97.7 bits (243), Expect = 1e-24
 Identities = 28/213 (13%), Positives = 62/213 (29%), Gaps = 54/213 (25%)

Query: 44  RVECEAG---VVETWDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTY 99
             + + G   +++ ++   E+ +      V+ +  +   LLLP  S+S  LV +L+    
Sbjct: 14  LFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEG--- 70

Query: 100 RRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYN 159
            +       P   +TY+                          QGD   + AG   +  N
Sbjct: 71  -QAILVLVNPDGRDTYK------------------------LDQGDAIKIQAGTPFYLIN 105

Query: 160 EGST-PVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCG 218
             +   +  +                  F L+                       +    
Sbjct: 106 PDNNQNLRILKFAITFRRPG----TVEDFFLSSTKRL-----------------PSYLSA 144

Query: 219 FDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV 251
           F    L  +++     + +   +++  G IV +
Sbjct: 145 FSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM 177

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 73.8 bits (181), Expect = 4e-16
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 15/129 (11%)

Query: 315 AGHITTLNSFNLPVLRWIQLSAERGL---LHRNAMMVPHWNLNAHSIMYAISGSCHVQVV 371
            G +  L  FN    +   L   R L      N +++PH   ++  ++  + G   + +V
Sbjct: 19  HGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLLVLVLEGQAILVLV 77

Query: 372 DSYGRSVYDGEVRRGQIMVVPQN--FAVVKRAGGAEFEWISFKTNDNAM-------ISPL 422
           +  GR  Y   + +G  + +     F ++          + F              +S  
Sbjct: 78  NPDGRDTYK--LDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSST 135

Query: 423 SGRTSVMRG 431
               S +  
Sbjct: 136 KRLPSYLSA 144

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score =  101 bits (252), Expect = 3e-24
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS 365
           S      +  G+   +    LP+     L++    L   A+   HW+  A    Y I GS
Sbjct: 46  SDTHNRLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEAE-WAYMIYGS 102

Query: 366 CHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGR 425
             V +VD  GRS  D +V  G +   P       +A     E++    + +   +     
Sbjct: 103 ARVTIVDEKGRSFID-DVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQL 161

Query: 426 TSVMRG 431
           T  +  
Sbjct: 162 TDWLAH 167

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 83.1 bits (205), Expect = 5e-18
 Identities = 43/291 (14%), Positives = 83/291 (28%), Gaps = 65/291 (22%)

Query: 132 QDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAG 191
           +     I    +GD++  P+G+ H            +++ D  +                
Sbjct: 110 EKGRSFIDDVGEGDLWYFPSGLPHSIQA-LEEGAEFLLVFDDGS---------------- 152

Query: 192 NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV 251
               E    +            +        ++A  F V +  +  L  ++ Y       
Sbjct: 153 --FSENSTFQLT----------DWLAHTPKEVIAANFGVTKEEISNLPGKEKYI------ 194

Query: 252 RGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADIY 311
                  + P +      E  + E          +    E+                   
Sbjct: 195 ----FENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESE------------------ 232

Query: 312 TQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVV 371
               G +   +S N  V +   +++    +   AM   HW+ N H   Y ISG   + V 
Sbjct: 233 ---GGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVF 287

Query: 372 DSYGRSVYDGEVRRGQIMVVPQNFA-VVKRAGGAEFEWIS-FKTNDNAMIS 420
            S G +      + G +  VP      V+  G     ++  FK +  A +S
Sbjct: 288 ASDGHARTF-NYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVS 337

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 31/113 (27%)

Query: 132 QDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAG 191
            D H +   ++ GD+  +P  + H+  N G  P+V + +    +                
Sbjct: 289 SDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHY--------------- 333

Query: 192 NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDY 244
                                N          +    ++ +     L  EK  
Sbjct: 334 ----------------ADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKHP 370

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 97.3 bits (242), Expect = 4e-24
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 57/240 (23%)

Query: 44  RVECEAG---VVETWDPGHEQFQ-CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTY 99
             + + G   V++ ++   +Q Q      ++    +   LLLP  +++  L+ IL     
Sbjct: 13  LFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNG--- 69

Query: 100 RRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYN 159
                        ++Y                          + GD   +PAG  ++  N
Sbjct: 70  -TAILTLVNNDDRDSY------------------------NLQSGDALRVPAGTTYYVVN 104

Query: 160 EGST-PVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCG 218
             +   +  + L    N   +       F L+    Q+                 +   G
Sbjct: 105 PDNDENLRMITLAIPVNKPGRF----ESFFLSSTQAQQ-----------------SYLQG 143

Query: 219 FDTRILAEAFNVDERLVRRL-RSEKDYRGAIVTVRGQLQVARPPRTQ--SQREYEEDSSE 275
           F   IL  +++     + ++    ++ +        +  +    + Q     ++ + SS 
Sbjct: 144 FSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQESVIVEISKKQIRELSKHAKSSSR 203

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 15/138 (10%)

Query: 306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHR---NAMMVPHWNLNAHSIMYAI 362
               ++    GH+  L  FN    +   L   R L      N +++PH   +A  ++  +
Sbjct: 9   RFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHA-DADYLIVIL 67

Query: 363 SGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFA--VVKRAGGAEFEWISFKTNDNAM-- 418
           +G+  + +V++  R  Y+  ++ G  + VP      VV          I+     N    
Sbjct: 68  NGTAILTLVNNDDRDSYN--LQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGR 125

Query: 419 -----ISPLSGRTSVMRG 431
                +S    + S ++G
Sbjct: 126 FESFFLSSTQAQQSYLQG 143

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 88.8 bits (220), Expect = 2e-21
 Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 54/200 (27%)

Query: 44  RVECEAG---VVETWDPGHEQFQCAG-VAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTY 99
             E + G   +++ ++    Q +      +V+   +   +LLP  +++  L+++L     
Sbjct: 17  LFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSG--- 73

Query: 100 RRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYN 159
            R           ++Y                            GD   +PAG  ++  N
Sbjct: 74  -RAILTLVNNDDRDSY------------------------NLHPGDAQRIPAGTTYYLVN 108

Query: 160 EG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCG 218
                 +  + L    N   +       F L+    Q+                 +   G
Sbjct: 109 PHDHQNLKMIWLAIPVNKPGRY----DDFFLSSTQAQQ-----------------SYLQG 147

Query: 219 FDTRILAEAFNVDERLVRRL 238
           F   IL  +F+ +   + R+
Sbjct: 148 FSHNILETSFHSEFEEINRV 167

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 78.4 bits (193), Expect = 9e-18
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 303 GDPSKADIYTQGAGHITTLNSFN-----LPVLRWIQLSAERGLLHRNAMMVPHWNLNAHS 357
              S   ++    G I  L  FN     L  LR  ++   +     N +++PH   +A  
Sbjct: 10  SSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQ--SKPNTILLPHHA-DADF 66

Query: 358 IMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQ--NFAVVKRAGGAEFEWISFKTND 415
           +++ +SG   + +V++  R  Y+  +  G    +P    + +V        + I      
Sbjct: 67  LLFVLSGRAILTLVNNDDRDSYN--LHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPV 124

Query: 416 NA-------MISPLSGRTSVMRG 431
           N         +S    + S ++G
Sbjct: 125 NKPGRYDDFFLSSTQAQQSYLQG 147

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 83.8 bits (207), Expect = 8e-20
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 319 TTLNSFN---LPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG 375
           T  N F          + +      +   A+ VPH+   A  I+    G  HV++V   G
Sbjct: 2   TIGNEFGNLTERTDNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKG 61

Query: 376 RS------VYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTN-DNAMISPLSGRTS 427
                    Y  E+ +  + V+P  + V  +A      +  F  N +N   + L+G+T 
Sbjct: 62  NKETLEYESYRAELSKDDVFVIPAAYPVAIKATS-NVNFTGFGINANNNNRNLLAGKTD 119

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 72.3 bits (177), Expect = 1e-15
 Identities = 17/180 (9%), Positives = 43/180 (23%), Gaps = 44/180 (24%)

Query: 66  GVAVVRHTIRQKGLLLPQF-SNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFG 124
            V +    + +  L +P + S +  ++ + +   +                        G
Sbjct: 19  NVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHV--------------------ELVG 58

Query: 125 ESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNP 184
               +   +         + D+F +PA          +       +            N 
Sbjct: 59  PKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGFGI---------NANNN 109

Query: 185 RKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDY 244
            +  LAG          +                    +L   F+     V +L +++  
Sbjct: 110 NRNLLAGKTDNVISSIGRA--------------LDGKDVLGLTFSGSGDEVMKLINKQSG 155

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 36/265 (13%), Positives = 70/265 (26%), Gaps = 49/265 (18%)

Query: 132 QDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAG 191
            +  Q+ R    GD  ++P  V H    +     +  V++     D         F+  G
Sbjct: 87  GNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTGVIVPGGFEDL--------FYYLG 138

Query: 192 NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV 251
               +                  +    D+   +     D   +  L+S   Y       
Sbjct: 139 TNATD------------TTHTPYIPSSSDS---SSTTGPDSSTISTLQSFDVYA------ 177

Query: 252 RGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDPSKADI- 310
               +++  PRT +       ++ +           G         +    G        
Sbjct: 178 ----ELSFTPRTDTVNGTAPANTVWHTGANALASTAGD-----PYFIANGWGPKYLNSQY 228

Query: 311 -YTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQ 369
            Y   A  +T   + +        LS        + + VP W+           G   VQ
Sbjct: 229 GYQIVAPFVTATQAQDTNY----TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQ 284

Query: 370 VVDSYGRSVYDGEVRRGQIMVVPQN 394
           + D    +    E+  G +  +P  
Sbjct: 285 IGD--YAAT---ELGSGDVAFIPGG 304

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 11/47 (23%), Positives = 14/47 (29%)

Query: 136 QKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDR 182
                   GD+  +P GV    Y+E     V  V       D  L  
Sbjct: 288 YAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSGSDGLDQNLVN 334

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 128 GRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDV 173
           G       +       GDI  + A    W    G      ++  D+
Sbjct: 195 GEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDM 240

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.8 bits (87), Expect = 0.002
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 128 GRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDV 173
           G++    +Q       GD   L A     CY+ G      ++  DV
Sbjct: 219 GKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDV 264

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	436
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	100.0
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	99.97
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.97
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	99.96
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	99.96
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	99.96
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	99.96
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	99.95
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.94
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	99.94
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.92
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.89
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.88
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.86
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.86
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.84
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.83
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.8
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.78
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.78
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.75
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.71
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.7
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.63
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.61
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.6
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.59
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.37
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.32
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.27
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.24
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.19
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.17
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.16
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.12
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.1
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.05
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.02
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.97
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.96
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	98.95
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.95
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.95
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.92
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.83
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.8
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.78
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.74
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	98.7
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.67
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.67
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.64
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.61
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.6
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.58
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.58
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.35
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.11
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.11
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.83
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.73
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.72
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	97.69
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	97.46
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	97.34
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	97.26
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.08
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	96.98
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	96.51
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	96.49
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	96.49
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.44
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	96.4
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.36
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.34
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	96.33
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	96.3
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	96.2
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	96.13
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	95.95
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	95.88
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	95.75
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	95.67
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	95.21
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	95.15
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	94.99
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	94.87
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	94.76
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	94.2
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	93.9
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	93.9
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	93.84
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	93.59
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	93.58
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	93.48
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	92.95
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	92.81
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	92.56
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	92.51
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	91.36
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	90.17
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	89.12
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	89.11
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	88.48
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	88.05
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	86.67
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	86.5
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	86.17
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	85.91
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	84.41
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	84.02
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	82.76
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	80.4

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=2e-60  Score=456.30  Aligned_cols=229  Identities=47%  Similarity=0.835  Sum_probs=196.2

Q ss_pred             CCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeC
Q 046186           29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPF  108 (436)
Q Consensus        29 ~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~  108 (436)
                      |+|++++|+|++|+++++||||++|+||+++++|+|+||++.|++|+|+||++|||++|+.|+||++|    +|++|+|+
T Consensus         1 ~~C~~~~L~a~eP~~r~~sE~G~~E~wd~~~~qlqcagV~~~r~~I~p~gL~lP~ys~a~~i~yV~qG----~G~~giv~   76 (245)
T d1od5a1           1 NECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQG----KGAIGFAF   76 (245)
T ss_dssp             CTTCCSCCCCBCCCEEEEETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEEC----EEEEEECC
T ss_pred             CcccccccccCCCchhhcccCCeEEeCCCCCHHHhhcCceeEEEEEcCCccccccccCCCeEEEEEeC----EEEEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999    99999999


Q ss_pred             CCCCCcccCCCCCCCC--ccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCce
Q 046186          109 PGYPETYQSPQQGGFG--ESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRK  186 (436)
Q Consensus       109 pg~~et~~~~~~~~~~--~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~  186 (436)
                      ||||+||++++++.++  +++.++..|.|+|+++|++||||+||||++||+||+||++|++|+++|++|+.||||+++++
T Consensus        77 Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~  156 (245)
T d1od5a1          77 PGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRV  156 (245)
T ss_dssp             TTCCCCEEECC---------------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCC
T ss_pred             CCChhhhcchhhcccccccccccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCccee
Confidence            9999999987764332  22345677899999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCChhhhhHhhh----------h---hhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcC
Q 046186          187 FHLAGNPHQEFQQQRQ----------Q---ERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRG  253 (436)
Q Consensus       187 f~laG~~~~~~~~~~~----------~---~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~  253 (436)
                      |||||++.+++.+.++          +   +..+....++|||+||++++||+||||+.++++||++++++||.||+|++
T Consensus       157 F~laG~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~nif~gF~~~~La~Af~v~~e~~~klq~~~~~rG~IVrv~~  236 (245)
T d1od5a1         157 FYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEG  236 (245)
T ss_dssp             EESSSCCCCSCTTTTC---------------------CCCCTTTTSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECSS
T ss_pred             EEecCCcccccchhcccchhhhhcccccccccccccccCCCeeecCCHHHHHHHHCCCHHHHHHHhCcccCCCcEEEEcC
Confidence            9999997653211111          0   01123455689999999999999999999999999998899999999999


Q ss_pred             ceeccCCC
Q 046186          254 QLQVARPP  261 (436)
Q Consensus       254 ~l~~~~p~  261 (436)
                      +|++++|.
T Consensus       237 ~l~~~~P~  244 (245)
T d1od5a1         237 GLSVISPK  244 (245)
T ss_dssp             CCCCCCSC
T ss_pred             CccccCCC
Confidence            99999885

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=8e-60  Score=450.64  Aligned_cols=227  Identities=45%  Similarity=0.834  Sum_probs=188.5

Q ss_pred             CCCccccccccCCCceeecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeC
Q 046186           29 NDCQINNLEALEPNNRVECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPF  108 (436)
Q Consensus        29 ~~C~~~~l~a~eP~~~~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~  108 (436)
                      |+|++++|+|+||+++++||||++|+||+++++|+|+||++.|++|+|+||++|||++|+.|+||++|    +|++++|+
T Consensus         1 ~~C~~~~L~a~eP~~ri~sE~G~~E~~d~~~~qlqcagV~~~r~~I~p~gL~lP~y~~a~~i~yV~qG----~G~~g~v~   76 (239)
T d1fxza1           1 NECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQG----KGIFGMIY   76 (239)
T ss_dssp             CTTCCSCCCCBCCSCEEEETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEC----CEEEEEEC
T ss_pred             CcccccccccCCCchhhccCCceEEecCCCChhhhhccchhheeeeccCceecceecCCCeEEEEEeC----EEEEEEec
Confidence            68999999999999999999999999999999999999999999999999999999999999999999    99999999


Q ss_pred             CCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceee
Q 046186          109 PGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFH  188 (436)
Q Consensus       109 pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~  188 (436)
                      |||||||++++++++ ++++++..|.|+|+++|++||||+||||++||+||+||++|++|+++|++|..||||.++++||
T Consensus        77 pgc~et~~~~~~~~~-~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~  155 (239)
T d1fxza1          77 PGCPSTFEEPQQPQQ-RGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFY  155 (239)
T ss_dssp             TTCCCC-------------------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEE
T ss_pred             CCChhhhcccccccc-cccccccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeee
Confidence            999999988765432 2345667788999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCChhhhhHhhhhh----------hcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcC--CCceeEEEEcCcee
Q 046186          189 LAGNPHQEFQQQRQQE----------RFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEK--DYRGAIVTVRGQLQ  256 (436)
Q Consensus       189 laG~~~~~~~~~~~~~----------~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~--~~rG~Iv~~~~~l~  256 (436)
                      |||++.++++..++++          ++++...++|||+||++++||+||||+.++++||++++  ++||.||||+++|+
T Consensus       156 laG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~gFs~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv~~~l~  235 (239)
T d1fxza1         156 LAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLS  235 (239)
T ss_dssp             SSSSCCCTTHHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSSCCC
T ss_pred             ccCCcccccccccccccccccccccccccccccCCCcccccCHHHHHHHHCcCHHHHHHHhcccccccCCCEEEEcCCcc
Confidence            9999887543333211          11234555899999999999999999999999999876  67999999999999


Q ss_pred             ccCC
Q 046186          257 VARP  260 (436)
Q Consensus       257 ~~~p  260 (436)
                      +++|
T Consensus       236 ~~~P  239 (239)
T d1fxza1         236 VIKP  239 (239)
T ss_dssp             CCCC
T ss_pred             ccCC
Confidence            9877

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1e-48  Score=397.00  Aligned_cols=293  Identities=15%  Similarity=0.211  Sum_probs=234.0

Q ss_pred             cCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCc
Q 046186           47 CEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGE  125 (436)
Q Consensus        47 se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~  125 (436)
                      .+||.++..+ .++|.++  +|++++++|+||++++||||++.||.||++|    ++++++|++++              
T Consensus        53 ~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~ae~~yVl~G----~~~vt~Vd~~G--------------  112 (372)
T d1j58a_          53 EKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEAEWAYMIYG----SARVTIVDEKG--------------  112 (372)
T ss_dssp             ETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSCEEEEEEEE----EEEEEEECTTS--------------
T ss_pred             cCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCcccEEEEEeC----EEEEEEEeCCC--------------
Confidence            4789987666 5689987  6899999999999999999997799999999    99999998742              


Q ss_pred             cCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhh
Q 046186          126 SAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQER  205 (436)
Q Consensus       126 ~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~  205 (436)
                               ...+.+|++||+|+||+|++||++|. +++++++.+||..++.     ....|.+                
T Consensus       113 ---------~~~~~~l~~GDv~~~P~G~~H~i~n~-~dg~e~l~vf~~~~~~-----~~~~f~~----------------  161 (372)
T d1j58a_         113 ---------RSFIDDVGEGDLWYFPSGLPHSIQAL-EEGAEFLLVFDDGSFS-----ENSTFQL----------------  161 (372)
T ss_dssp             ---------CEEEEEEETTEEEEECTTCCEEEEEE-EEEEEEEEEESCTTCC-----GGGEEEH----------------
T ss_pred             ---------cEEEEEeccCCEEEECCCCEEEEEeC-CCCcEEEEEECCCCcc-----cccceee----------------
Confidence                     12356899999999999999999996 4678889899876643     2233433                


Q ss_pred             cccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCC
Q 046186          206 FGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGG  285 (436)
Q Consensus       206 ~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  285 (436)
                             .++|++||.+||++||+++.+++++|+.++.   +|+...      .|....         ++..  +    +
T Consensus       162 -------~~~~~~~p~evLa~af~v~~~~~~~i~~~e~---~i~~~~------~p~~~~---------~~~~--~----~  210 (372)
T d1j58a_         162 -------TDWLAHTPKEVIAANFGVTKEEISNLPGKEK---YIFENQ------LPGSLK---------DDIV--E----G  210 (372)
T ss_dssp             -------HHHHHTSCHHHHHHHHTCCTGGGTTSCSSCC---SEECCC------CCCCHH---------HHCC--C----C
T ss_pred             -------ccccccCCHHHHHHhhCCCHHHHhhcccccc---cccccc------CCCcch---------hhhc--c----C
Confidence                   5899999999999999999999999988776   565432      122111         0000  1    1


Q ss_pred             CCCCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeee
Q 046186          286 DNGVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGS  365 (436)
Q Consensus       286 ~ng~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~  365 (436)
                      .+|-..    ..+.||+..  ++| +++.||+++++++.+||+|+  +|+++.+.|.||+|++|||||+|+||.||++|+
T Consensus       211 ~~g~~~----~~~~~~l~~--q~P-~~~~gG~~~~~d~~~fp~~~--~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~  281 (372)
T d1j58a_         211 PNGEVP----YPFTYRLLE--QEP-IESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGK  281 (372)
T ss_dssp             TTCCCS----SCSEEEGGG--SCC-EECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESE
T ss_pred             CCCCCC----Ccceeeccc--cCC-cccCCccEEEeccccCCccC--ceeEEEEEECCCcccCCCCCCCCcEEEEEEECe
Confidence            122211    234567763  455 58899999999999999999  899999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCCCccccccccccccccCC
Q 046186          366 CHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGR  434 (436)
Q Consensus       366 grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~  434 (436)
                      ++++|++++|+. .+.++++|||+|||+|++|++ |+|++++.||++++++++...-|   .+.+.++|.
T Consensus       282 g~v~v~~~~g~~-~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~~~i~~---~~~l~~~P~  347 (372)
T d1j58a_         282 ARMTVFASDGHA-RTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSL---NQWLAMLPE  347 (372)
T ss_dssp             EEEEEEEETTEE-EEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEH---HHHHHTSCH
T ss_pred             EEEEEEcCCCce-EEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEECCCCcceeeH---HHHhhhCCH
Confidence            999999998764 667799999999999999998 88999999999999987754323   245555553

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=2.1e-41  Score=309.54  Aligned_cols=145  Identities=50%  Similarity=0.842  Sum_probs=138.6

Q ss_pred             CCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEE
Q 046186          288 GVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCH  367 (436)
Q Consensus       288 g~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~gr  367 (436)
                      |+||++|+||+++||++|+++|+|++.+|+++++|+++||+|+++|||+++++|+||||++|||||+|+||.||++|+++
T Consensus         1 ~~~e~~c~~~~r~ni~~p~~~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~   80 (173)
T d1od5a2           1 GVEENICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGR   80 (173)
T ss_dssp             CCCSSGGGCCCEEECCSGGGCSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEE
T ss_pred             CcccceeeeeeecCCCCcccCCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          368 VQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       368 v~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      ++||+++|+++++++|++|||++||+|++|++++++++++|++|+++.++....+   .|+|++||.|
T Consensus        81 v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~~~~~~~v~~~~~~~~~~~~~---~s~l~~~p~e  145 (173)
T d1od5a2          81 VRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYI---KDVFRAIPSE  145 (173)
T ss_dssp             EEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEEH---HHHHHHSCHH
T ss_pred             EEEEeCCCceEEeEEecCCcEEEECCCCEEEEEcCCCceEEEEeecCCchhhhhH---HHHHHhCCHH
Confidence            9999999999999999999999999999999988889999999999888876555   5999999864

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=1.1e-40  Score=305.00  Aligned_cols=143  Identities=49%  Similarity=0.892  Sum_probs=139.2

Q ss_pred             ceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEe
Q 046186          293 MCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVD  372 (436)
Q Consensus       293 ~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~  372 (436)
                      +|+||+++||++|+++|+|++.+|+++++++.+||+|+++|||+++++|+||||++|||||+|+||.||++|++++++|+
T Consensus         1 ~c~~~~~~ni~~~~~~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~   80 (174)
T d1fxza2           1 ICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVN   80 (174)
T ss_dssp             CTTCCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEEC
T ss_pred             CcceehhhccCCCCCCCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEec
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          373 SYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       373 ~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      ++|+++++.+|++|||+|||+|++|++.+++++++|++|++++++.+.+|+|.+|+|++||.|
T Consensus        81 ~~g~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~~~~~v~~~~~~~~~~~~lag~~s~l~~~~~~  143 (174)
T d1fxza2          81 CNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEE  143 (174)
T ss_dssp             TTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSSSCCEEESSSTTCTGGGSCHH
T ss_pred             CCCceeEEEEEcCCcEEEECCCCEEEEEeCCCCeEEEEEEccCCCCcccccchhhhhhcCCHH
Confidence            999999999999999999999999999888889999999999999999999999999999864

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=100.00  E-value=3.4e-37  Score=287.53  Aligned_cols=174  Identities=19%  Similarity=0.218  Sum_probs=151.8

Q ss_pred             ceeecCCcEEEEeCC---CCcccccc-ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCC
Q 046186           43 NRVECEAGVVETWDP---GHEQFQCA-GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSP  118 (436)
Q Consensus        43 ~~~~se~G~~e~~~~---~~p~l~~~-gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~  118 (436)
                      .++++++|.+.+++.   +.++|++. ++++++++|+|+||++|||++|++|+||++|    +|++++|+|+|+++|+  
T Consensus        14 ~~~~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~nA~~i~yV~~G----~G~v~~v~p~~~~~~~--   87 (200)
T d2phla1          14 TLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSG----SAILVLVKPDDRREYF--   87 (200)
T ss_dssp             EEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEES----EEEEEEEETTTEEEEE--
T ss_pred             ceeECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecCCCCEEEEEEee----eEEEEEEECCCCceee--
Confidence            469999999998764   57889986 7999999999999999999999999999999    9999999999998763  


Q ss_pred             CCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC-CCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhh
Q 046186          119 QQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEF  197 (436)
Q Consensus       119 ~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~  197 (436)
                                      +++..+|++||||+||+|++||++|.+ +++|++++++++.|.     +.+++|||||+..+  
T Consensus        88 ----------------~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~-----~~~~~f~lag~~~~--  144 (200)
T d2phla1          88 ----------------FLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNN-----PQIHEFFLSSTEAQ--  144 (200)
T ss_dssp             ----------------EEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSS-----SSCCEEECCCBTTB--
T ss_pred             ----------------hhhccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCC-----Cccccceecccccc--
Confidence                            345679999999999999999999977 579999999988774     34689999998544  


Q ss_pred             hHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhh--cCCCceeEEEEcC-ceeccCC
Q 046186          198 QQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRS--EKDYRGAIVTVRG-QLQVARP  260 (436)
Q Consensus       198 ~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~--~~~~rG~Iv~~~~-~l~~~~p  260 (436)
                                     .|||++|++++||+|||++.++++||+.  +++++|.||++++ +++.++|
T Consensus       145 ---------------~svl~~f~~evLa~aF~v~~e~~~kl~~~~~~q~~g~Iv~~~~eq~~~ls~  195 (200)
T d2phla1         145 ---------------QSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSK  195 (200)
T ss_dssp             ---------------CCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHHHHHH
T ss_pred             ---------------ccHhHcCCHHHHHHHcCCCHHHHHHHHhccccccCCceEEcCHHHHHHhhc
Confidence                           7999999999999999999999999974  3456899999964 6776654

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=5e-35  Score=269.59  Aligned_cols=173  Identities=17%  Similarity=0.204  Sum_probs=135.1

Q ss_pred             ccccccCCCceeecCCcEEEEeC-CCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCC
Q 046186           34 NNLEALEPNNRVECEAGVVETWD-PGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGY  111 (436)
Q Consensus        34 ~~l~a~eP~~~~~se~G~~e~~~-~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~  111 (436)
                      .+|.+.+|.  +++++|.+..++ .++|+|+|+||++++++|+||||++||||+ |++|+||++|    +|++++|+|+|
T Consensus        10 fnl~~~~p~--~~n~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G----~g~v~~v~~~~   83 (185)
T d1uika2          10 FNLRSRDPI--YSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEG----EANIELVGIKE   83 (185)
T ss_dssp             EETTSSCCS--EESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEES----CEEEEEEEC--
T ss_pred             cccccCCCc--eeCCCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEee----EEEEEEEccCc
Confidence            367777775  999999876655 578999999999999999999999999997 9999999999    99999999999


Q ss_pred             CCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecC
Q 046186          112 PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAG  191 (436)
Q Consensus       112 ~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG  191 (436)
                      ++++++.++.         ..+.+++..+|++||||+||+|++||++|++|..++++.+   ++..|      ..+|++|
T Consensus        84 ~~~~~~~~~~---------~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d~~~v~~~~---~~~~~------~~~f~ag  145 (185)
T d1uika2          84 QQQRQQQEEQ---------PLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGI---NAENN------QRNFLAG  145 (185)
T ss_dssp             -------------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEE---TCTTC------CEEESSS
T ss_pred             cchhhccccc---------cCcceeEEEEecCCcEEEECCCCEEEEEcCCCccEEEEEE---cCCCC------ccccccc
Confidence            9887654332         2234566799999999999999999999988755544432   22222      4677776


Q ss_pred             CChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEE
Q 046186          192 NPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVT  250 (436)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~  250 (436)
                      +.                   +|+|++||+++|++|||++.++++||+++++ .+.|+.
T Consensus       146 ~~-------------------~~vl~~~~~evLa~aF~v~~~~~~kl~~~q~-e~~i~~  184 (185)
T d1uika2         146 SK-------------------DNVISQIPSQVQELAFPGSAKDIENLIKSQS-ESYFVD  184 (185)
T ss_dssp             SS-------------------SBGGGGSCHHHHHHHSSSCHHHHHHHHHHCC-SCSEEE
T ss_pred             cc-------------------ccccccCCHHHHHHHhCCCHHHHHHHHhcCC-ceEEec
Confidence            53                   6999999999999999999999999998887 468875

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=100.00  E-value=6.4e-34  Score=260.68  Aligned_cols=161  Identities=16%  Similarity=0.233  Sum_probs=143.2

Q ss_pred             CceeecCCcEEEEeC---CCCcccccc-ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccC
Q 046186           42 NNRVECEAGVVETWD---PGHEQFQCA-GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQS  117 (436)
Q Consensus        42 ~~~~~se~G~~e~~~---~~~p~l~~~-gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~  117 (436)
                      .+++++++|.+++++   .+.++|++. ++++.+++|+||+|++|||++|++++||++|    +|++++|+|+|.     
T Consensus        12 ~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G----~g~v~~v~~~~~-----   82 (178)
T d1dgwa_          12 LTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEG----QAILVLVNPDGR-----   82 (178)
T ss_dssp             EEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEES----EEEEEEEETTEE-----
T ss_pred             ccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCcccccccCCCCEEEEEEEe----EEEEEEecCCce-----
Confidence            457999999988765   456889997 5999999999999999999889999999999    999999998753     


Q ss_pred             CCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC-CCcEEEEEEEecCCCCCcCCCCCceeeecCCChhh
Q 046186          118 PQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG-STPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQE  196 (436)
Q Consensus       118 ~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~  196 (436)
                                         .+++|++||+++||+|++||++|.+ +++|++++++++.|..    +.++.|+++|+..+ 
T Consensus        83 -------------------~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~----~~~~~f~~~~~~~~-  138 (178)
T d1dgwa_          83 -------------------DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRP----GTVEDFFLSSTKRL-  138 (178)
T ss_dssp             -------------------EEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSST----TCCCEEESSCCSSC-
T ss_pred             -------------------EEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCC----ccccccccccccCc-
Confidence                               3579999999999999999999976 4799999999877643    56789999988543 


Q ss_pred             hhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEE
Q 046186          197 FQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV  251 (436)
Q Consensus       197 ~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~  251 (436)
                                      .|||++||+++|++||+++.++++||+.+++++|.|+++
T Consensus       139 ----------------~svl~~~~~evL~~aF~v~~e~~~kl~~~~~~~g~Iv~~  177 (178)
T d1dgwa_         139 ----------------PSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKM  177 (178)
T ss_dssp             ----------------CCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEEC
T ss_pred             ----------------ccHHHhCCHHHHHHHhCCCHHHHHHHHhcccCCCcEEeC
Confidence                            799999999999999999999999999888889999986

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=6.6e-34  Score=265.71  Aligned_cols=155  Identities=17%  Similarity=0.255  Sum_probs=134.1

Q ss_pred             CceeecCCcEEEEeC---CCCcccccc-ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccC
Q 046186           42 NNRVECEAGVVETWD---PGHEQFQCA-GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQS  117 (436)
Q Consensus        42 ~~~~~se~G~~e~~~---~~~p~l~~~-gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~  117 (436)
                      .+++++++|.+.+.+   .+.++|++. ++++++++|+||+|++|||++|++++||++|    +|++++|+|+|++    
T Consensus        11 ~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G----~g~~~~v~~~~~~----   82 (203)
T d1uika1          11 QTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNG----TAILTLVNNDDRD----   82 (203)
T ss_dssp             EEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEES----EEEEEEECSSCEE----
T ss_pred             cCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCccccccCCCcEEEEEEEE----EEEEEEEeCCCeE----
Confidence            458999999887754   456778865 8999999999999999999999999999999    9999999998753    


Q ss_pred             CCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCC-CcEEEEEEEecCCCCCcCCCCCceeeecCCChhh
Q 046186          118 PQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGS-TPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQE  196 (436)
Q Consensus       118 ~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~-e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~  196 (436)
                                          +++|++||||+||+|++||++|+++ ++|+++++.++.|..+    .++.||++|+..+ 
T Consensus        83 --------------------~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~----~~~~f~~~g~~~~-  137 (203)
T d1uika1          83 --------------------SYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPG----RFESFFLSSTQAQ-  137 (203)
T ss_dssp             --------------------EEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTT----BCCEEECSCCSSC-
T ss_pred             --------------------EEEecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcc----cccccccccCccc-
Confidence                                5789999999999999999999885 6899999888877655    4689999998544 


Q ss_pred             hhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCc
Q 046186          197 FQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYR  245 (436)
Q Consensus       197 ~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~r  245 (436)
                                      .|||++||+++|++||+++.++++||+.+++++
T Consensus       138 ----------------~~vl~gf~~~vL~~aF~v~~e~~~kl~~~q~~~  170 (203)
T d1uika1         138 ----------------QSYLQGFSKNILEASYDTKFEEINKVLFGREEG  170 (203)
T ss_dssp             ----------------CCGGGGSCHHHHHHHHTSCHHHHHHHTTC----
T ss_pred             ----------------cchhHhCCHHHHHHHhCCCHHHHHHHHhccccc
Confidence                            799999999999999999999999998766543

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.97  E-value=8.8e-31  Score=238.88  Aligned_cols=163  Identities=13%  Similarity=0.243  Sum_probs=137.1

Q ss_pred             Cccc-cccccCCC--ceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEE
Q 046186           31 CQIN-NLEALEPN--NRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHG  105 (436)
Q Consensus        31 C~~~-~l~a~eP~--~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g  105 (436)
                      |.++ +.+..+|+  ..+..++|.+..++. ++|.|++.|+++++++|+||||++||||+ |+||+||++|    +|+++
T Consensus         2 c~~~~~~ni~~~~~~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G----~~~v~   77 (174)
T d1fxza2           2 CTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNG----RALIQ   77 (174)
T ss_dssp             TTCCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEES----EEEEE
T ss_pred             cceehhhccCCCCCCCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEec----ceEEE
Confidence            7776 66666664  479999999998885 68999999999999999999999999997 9999999999    99999


Q ss_pred             eeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCc
Q 046186          106 DPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPR  185 (436)
Q Consensus       106 ~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~  185 (436)
                      +|++++.+                      ....+|++|||++||+|++||++|.+ +.+.+++++...+        +.
T Consensus        78 ~v~~~g~~----------------------~~~~~l~~Gdv~vvP~G~~h~~~n~~-~~~~~v~~~~~~~--------~~  126 (174)
T d1fxza2          78 VVNCNGER----------------------VFDGELQEGRVLIVPQNFVVAARSQS-DNFEYVSFKTNDT--------PM  126 (174)
T ss_dssp             EECTTSCE----------------------EEEEEEETTCEEEECTTCEEEEEECS-TTEEEEEEESSSS--------CC
T ss_pred             EecCCCce----------------------eEEEEEcCCcEEEECCCCEEEEEeCC-CCeEEEEEEccCC--------CC
Confidence            99874211                      11467999999999999999999965 5677777665333        24


Q ss_pred             eeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEE
Q 046186          186 KFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV  249 (436)
Q Consensus       186 ~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv  249 (436)
                      .++++|.                    .+||++||++||++||+++.+++++|++.+++ +.|+
T Consensus       127 ~~~lag~--------------------~s~l~~~~~~vl~~af~v~~eei~~lk~~q~~-~~~~  169 (174)
T d1fxza2         127 IGTLAGA--------------------NSLLNALPEEVIQHTFNLKSQQARQIKNNNPF-KFLV  169 (174)
T ss_dssp             EEESSST--------------------TCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCC-SSEE
T ss_pred             cccccch--------------------hhhhhcCCHHHHHHHHCcCHHHHHHHHhcCCc-eEeC
Confidence            7889988                    69999999999999999999999999988763 3443

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.97  E-value=6.9e-31  Score=238.75  Aligned_cols=161  Identities=17%  Similarity=0.251  Sum_probs=135.8

Q ss_pred             CCCccccccccCCCceeecCCcEEEEeC---CCCcccccc-ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEE
Q 046186           29 NDCQINNLEALEPNNRVECEAGVVETWD---PGHEQFQCA-GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSH  104 (436)
Q Consensus        29 ~~C~~~~l~a~eP~~~~~se~G~~e~~~---~~~p~l~~~-gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~  104 (436)
                      +.|-++.-+..++  ++++++|.+++++   .+.++|++. ++++++++|+||+|++|||++|++|+||++|    +|++
T Consensus         4 ~P~~f~~~~~f~~--~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G----~g~v   77 (170)
T d1uija1           4 NPFYFRSSNSFQT--LFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSG----RAIL   77 (170)
T ss_dssp             CTTEECGGGSEEE--EEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEES----CEEE
T ss_pred             CCeeccccccccc--ccccCCCcEEEEecccccchhhcchhheEEEEEEecCCcccccccCCCCEEEEEEEE----EEEE
Confidence            3444443333333  6999999988766   457899998 5999999999999999999889999999999    9999


Q ss_pred             EeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCC-CcEEEEEEEecCCCCCcCCCC
Q 046186          105 GDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGS-TPVVAVVLLDVANNDNQLDRN  183 (436)
Q Consensus       105 g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~-e~l~~v~~~d~~n~~nqld~~  183 (436)
                      ++|.|+|.                        .+++|++||+++||+|++||++|.++ +.++++++.++.|.    |+.
T Consensus        78 ~~v~~~~~------------------------~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~----~~~  129 (170)
T d1uija1          78 TLVNNDDR------------------------DSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNK----PGR  129 (170)
T ss_dssp             EEECSSCE------------------------EEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSB----TTB
T ss_pred             EEEeCCCc------------------------EEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEecCCcCC----Ccc
Confidence            99998754                        35789999999999999999999885 67888887776653    456


Q ss_pred             CceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhh
Q 046186          184 PRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRS  240 (436)
Q Consensus       184 ~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~  240 (436)
                      ++.|+++|+..+                 .|||++||++|||+||+|++++++||+.
T Consensus       130 ~~~f~~~~~~~~-----------------~svl~~~~~evLa~aF~v~~e~i~kl~~  169 (170)
T d1uija1         130 YDDFFLSSTQAQ-----------------QSYLQGFSHNILETSFHSEFEEINRVLF  169 (170)
T ss_dssp             CCEEESSCBSSC-----------------CCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             ccccccccCCCc-----------------ccHhHhCCHHHHHHHhCCCHHHHHHHhc
Confidence            789999988544                 7999999999999999999999999863

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.96  E-value=3.9e-30  Score=236.62  Aligned_cols=135  Identities=21%  Similarity=0.365  Sum_probs=118.3

Q ss_pred             cccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC-
Q 046186          298 LRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR-  376 (436)
Q Consensus       298 ~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~-  376 (436)
                      ..||+.  ++.|.|+|++|+++++++.++|+|+.+||++++++|+||||+.|||||+|++|+||++|+|+++||++++. 
T Consensus         8 ~pfnl~--~~~p~~~n~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~   85 (185)
T d1uika2           8 KPFNLR--SRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQ   85 (185)
T ss_dssp             SCEETT--SSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC----
T ss_pred             Cccccc--cCCCceeCCCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccc
Confidence            467887  46678999999999999999999999999999999999999999999999999999999999999999753 


Q ss_pred             ------------eEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCC-Ccccccc-ccccccccCCC
Q 046186          377 ------------SVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNA-MISPLSG-RTSVMRGKGRR  435 (436)
Q Consensus       377 ------------~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p-~~~~LaG-~~sv~~~lp~e  435 (436)
                                  ++++.+|++||||+||+||+|++.+. +++++++|..++.. .+.+++| .+|+|++||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~-~d~~~v~~~~~~~~~~~~f~ag~~~~vl~~~~~e  157 (185)
T d1uika2          86 QRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNAT-SDLNFFAFGINAENNQRNFLAGSKDNVISQIPSQ  157 (185)
T ss_dssp             --------CBCCEEEEEEECTTCEEEECTTCCEEEEES-SSEEEEEEEETCTTCCEEESSSSSSBGGGGSCHH
T ss_pred             hhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcC-CCccEEEEEEcCCCCcccccccccccccccCCHH
Confidence                        57899999999999999999999765 34888888877655 4667666 78999999864

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.96  E-value=1.3e-29  Score=230.94  Aligned_cols=162  Identities=16%  Similarity=0.278  Sum_probs=134.0

Q ss_pred             CCCccc-cccccCCC--ceeecCCcEEEEeCC-CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEE
Q 046186           29 NDCQIN-NLEALEPN--NRVECEAGVVETWDP-GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        29 ~~C~~~-~l~a~eP~--~~~~se~G~~e~~~~-~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~  103 (436)
                      +.|.++ +.+..+|.  ..+..++|.+..++. ++|.|++.|+++++++|+||||++||||+ |++|+||++|    +++
T Consensus         5 ~~c~~~~r~ni~~p~~~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G----~~~   80 (173)
T d1od5a2           5 NICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRG----KGR   80 (173)
T ss_dssp             SGGGCCCEEECCSGGGCSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEE----EEE
T ss_pred             ceeeeeeecCCCCcccCCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEec----ceE
Confidence            779987 66666665  368889999988875 68999999999999999999999999997 9999999999    999


Q ss_pred             EEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCC
Q 046186          104 HGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRN  183 (436)
Q Consensus       104 ~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~  183 (436)
                      +++|++++.+                      .-..+|++||+++||+|++||+.|. ++.+.++++++..+.       
T Consensus        81 v~~v~~~~~~----------------------~~~~~l~~Gdv~~iP~G~~h~~~n~-~~~~~~v~~~~~~~~-------  130 (173)
T d1od5a2          81 VRVVNCQGNA----------------------VFDGELRRGQLLVVPQNFVVAEQGG-EQGLEYVVFKTHHNA-------  130 (173)
T ss_dssp             EEEECTTSCE----------------------EEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEESSTTC-------
T ss_pred             EEEEeCCCce----------------------EEeEEecCCcEEEECCCCEEEEEcC-CCceEEEEeecCCch-------
Confidence            9999875321                      1136799999999999999999885 566888876653221       


Q ss_pred             CceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEE
Q 046186          184 PRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIV  249 (436)
Q Consensus       184 ~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv  249 (436)
                       ..+.+                       .+||++||++||++||+++++++++|+.+++ .|.||
T Consensus       131 -~~~~~-----------------------~s~l~~~p~evl~~af~v~~e~v~~lk~~~~-~~~i~  171 (173)
T d1od5a2         131 -VSSYI-----------------------KDVFRAIPSEVLSNSYNLGQSQVRQLKYQGN-SGPLV  171 (173)
T ss_dssp             -CEEEH-----------------------HHHHHHSCHHHHHHHHTCCHHHHHHHHHSSC-SSSEE
T ss_pred             -hhhhH-----------------------HHHHHhCCHHHHHHHhCcCHHHHHHHHhcCC-CCccc
Confidence             12222                       5899999999999999999999999998876 57776

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.95  E-value=3.3e-28  Score=226.46  Aligned_cols=127  Identities=19%  Similarity=0.232  Sum_probs=115.1

Q ss_pred             CCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeC--CCCeEEEEEe
Q 046186          306 SKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDS--YGRSVYDGEV  383 (436)
Q Consensus       306 ~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~--~G~~~~~~~l  383 (436)
                      ...+++++.+|+++.+++.+||+|++||||+++++|.||||.+|||||+|+||+||++|++++++++.  +++++++.+|
T Consensus        44 ~~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l  123 (201)
T d2et1a1          44 KAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVV  123 (201)
T ss_dssp             SCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEE
T ss_pred             cCCCccCCCCcEEEEeehhcCccccccceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEe
Confidence            45677889999999999999999999999999999999999999999999999999999999999985  4788999999


Q ss_pred             cCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCCCcccccccccccc---ccCC
Q 046186          384 RRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNAMISPLSGRTSVMR---GKGR  434 (436)
Q Consensus       384 ~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~---~lp~  434 (436)
                      ++|||||||+|++|++ |.+++++.+++++++++|+.+.++  .+++.   +||.
T Consensus       124 ~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~~pg~~~~~--~~~f~~~~~~p~  176 (201)
T d2et1a1         124 RAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVP--LTLFGSDPPIPT  176 (201)
T ss_dssp             CTTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCCEEHH--HHHHHCSSCCCH
T ss_pred             cCCCEEEECCCCeEEEEEcCCCCEEEEEEecCCCCcceehh--hhhhccCCCCCH
Confidence            9999999999999998 888999999999999999988776  44444   4554

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.94  E-value=3.4e-27  Score=212.63  Aligned_cols=158  Identities=13%  Similarity=0.125  Sum_probs=118.9

Q ss_pred             eecCCcEEEEeCCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCC
Q 046186           45 VECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF  123 (436)
Q Consensus        45 ~~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~  123 (436)
                      +.++.|.+...+     ++..+|++++++|+||+|++||||+ |++|+||++|    +|++++|+|++...         
T Consensus         3 ~~n~fg~~~~~~-----~n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G----~g~v~~v~~~g~~~---------   64 (162)
T d2phla2           3 IGNEFGNLTERT-----DNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEG----EAHVELVGPKGNKE---------   64 (162)
T ss_dssp             EEETTEEEEEEE-----ETTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEES----EEEEEEEEECC--C---------
T ss_pred             cccccCceeecC-----CCCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEe----eeEEEEEecCCccc---------
Confidence            456677643332     2346999999999999999999998 9999999999    99999999865321         


Q ss_pred             CccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhh
Q 046186          124 GESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQ  203 (436)
Q Consensus       124 ~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~  203 (436)
                             ..+.+....+|++|||++||+|++||++|+++++++++.+   .++.|      ..+||||+...        
T Consensus        65 -------~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~~v~~~~---~~~~~------~~~flaG~~~s--------  120 (162)
T d2phla2          65 -------TLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGFGI---NANNN------NRNLLAGKTDN--------  120 (162)
T ss_dssp             -------CSCEEEEEEEEETTCEEEECTTCCEEEEESSSEEEEEEEE---SCTTC------CEEESSSSSSB--------
T ss_pred             -------cccceeeEeeecCCcEEEECCCCEEEEEeCCCceEEEEEe---cCCCC------cceeecCcccc--------
Confidence                   1111233589999999999999999999988766554432   22322      36778876311        


Q ss_pred             hhcccccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEE
Q 046186          204 ERFGGHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTV  251 (436)
Q Consensus       204 ~~~~~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~  251 (436)
                            .....++++||+++|++||+++.++++||+.+|+ +++|+++
T Consensus       121 ------v~~~~~~~~~~~evL~~aF~v~~eevekl~~~q~-e~~~v~a  161 (162)
T d2phla2         121 ------VISSIGRALDGKDVLGLTFSGSGDEVMKLINKQS-GSYFVDA  161 (162)
T ss_dssp             ------HHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTCC-CCSEEEC
T ss_pred             ------chhhhcccCCCHHHHHHHhCCCHHHHHHHHhhCC-ceEEEeC
Confidence                  0002456899999999999999999999998887 4699875

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.94  E-value=2.7e-26  Score=213.47  Aligned_cols=149  Identities=19%  Similarity=0.237  Sum_probs=122.1

Q ss_pred             CCceeecCCcEEEEe-CCCCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCC
Q 046186           41 PNNRVECEAGVVETW-DPGHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSP  118 (436)
Q Consensus        41 P~~~~~se~G~~e~~-~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~  118 (436)
                      |-......+|.+... ..++|.|+++|++++|++|.|||+.+||||+ ++|++||++|    +++++++.+.++.     
T Consensus        45 ~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G----~~~v~~v~~~~~~-----  115 (201)
T d2et1a1          45 AGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKG----ELLVGILGSLDSG-----  115 (201)
T ss_dssp             CCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEES----CEEEEEECCGGGT-----
T ss_pred             CCCccCCCCcEEEEeehhcCccccccceeEEEEEECCCCCcCCcccCCCCEEEEEEcc----eEEEEEEeccCCC-----
Confidence            333344567776554 5689999999999999999999999999998 9999999999    9999998653211     


Q ss_pred             CCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhh
Q 046186          119 QQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQ  198 (436)
Q Consensus       119 ~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~  198 (436)
                                     .+....+|++||+|+||+|++||++|.|+++++++++|++.++..+        .++        
T Consensus       116 ---------------~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~~pg~~--------~~~--------  164 (201)
T d2et1a1         116 ---------------NKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV--------FVP--------  164 (201)
T ss_dssp             ---------------TCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCCE--------EHH--------
T ss_pred             ---------------ceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecCCCCcce--------ehh--------
Confidence                           1233589999999999999999999999999999999988776542        222        


Q ss_pred             Hhhhhhhccccccccccc---ccCCHHHHhhhcCCCHHHHHHHhhcCC
Q 046186          199 QQRQQERFGGHQQCNNVF---CGFDTRILAEAFNVDERLVRRLRSEKD  243 (436)
Q Consensus       199 ~~~~~~~~~~~~~~~nv~---~gf~~~vLa~af~v~~~~v~~l~~~~~  243 (436)
                                    ..+|   .+||++||++||++++++++||+++.-
T Consensus       165 --------------~~~f~~~~~~p~eVLa~af~i~~~~v~kLks~f~  198 (201)
T d2et1a1         165 --------------LTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFA  198 (201)
T ss_dssp             --------------HHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHTTT
T ss_pred             --------------hhhhccCCCCCHHHHHHHhCCCHHHHHHHHhhcc
Confidence                          2344   469999999999999999999987653

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.92  E-value=8.7e-26  Score=203.33  Aligned_cols=114  Identities=23%  Similarity=0.413  Sum_probs=99.3

Q ss_pred             cccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCe------EEEEEe
Q 046186          310 IYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS------VYDGEV  383 (436)
Q Consensus       310 ~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~------~~~~~l  383 (436)
                      +++|..|.+++++.      ++|+|++++++|+||||+.|||||+|++|+||++|+|+++||+++|++      +++.+|
T Consensus         2 ~~~n~fg~~~~~~~------n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l   75 (162)
T d2phla2           2 TIGNEFGNLTERTD------NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL   75 (162)
T ss_dssp             EEEETTEEEEEEEE------TTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEE
T ss_pred             ccccccCceeecCC------CCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeee
Confidence            46789999999985      557999999999999999999999999999999999999999999864      899999


Q ss_pred             cCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCC-Ccccccccc-cccc
Q 046186          384 RRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNA-MISPLSGRT-SVMR  430 (436)
Q Consensus       384 ~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p-~~~~LaG~~-sv~~  430 (436)
                      ++|||+|||+|++|++.+. ++.++++|.++..+ ..++|||+. |++.
T Consensus        76 ~~Gdv~vvP~G~~~~~~n~-~~~~~v~~~~~~~~~~~~flaG~~~sv~~  123 (162)
T d2phla2          76 SKDDVFVIPAAYPVAIKAT-SNVNFTGFGINANNNNRNLLAGKTDNVIS  123 (162)
T ss_dssp             ETTCEEEECTTCCEEEEES-SSEEEEEEEESCTTCCEEESSSSSSBHHH
T ss_pred             cCCcEEEECCCCEEEEEeC-CCceEEEEEecCCCCcceeecCccccchh
Confidence            9999999999999999775 46889998877654 678999986 4433

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=2.1e-23  Score=210.35  Aligned_cols=119  Identities=21%  Similarity=0.279  Sum_probs=109.3

Q ss_pred             CCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEc
Q 046186          313 QGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVP  392 (436)
Q Consensus       313 ~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP  392 (436)
                      ..|||+++++..+||+|+  +|+++.++|+||||++||||++| ||.||++|++++++|+++|+. +..+|++||||+||
T Consensus        53 ~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~a-e~~yVl~G~~~vt~Vd~~G~~-~~~~l~~GDv~~~P  128 (372)
T d1j58a_          53 EKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYFP  128 (372)
T ss_dssp             ETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSC-EEEEEEEEEEEEEEECTTSCE-EEEEEETTEEEEEC
T ss_pred             cCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCcc-cEEEEEeCEEEEEEEeCCCcE-EEEEeccCCEEEEC
Confidence            589999999999999999  89999999999999999999987 999999999999999999887 45589999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEEEecCCCCccccccccccccccCCC
Q 046186          393 QNFAVVKRAGGAEFEWISFKTNDNAMISPLSGRTSVMRGKGRR  435 (436)
Q Consensus       393 ~g~~h~~~ag~e~~~~l~f~~s~~p~~~~LaG~~sv~~~lp~e  435 (436)
                      +|++|++.+.+++++|+.++++.++.....++.+++++++|.|
T Consensus       129 ~G~~H~i~n~~dg~e~l~vf~~~~~~~~~~f~~~~~~~~~p~e  171 (372)
T d1j58a_         129 SGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKE  171 (372)
T ss_dssp             TTCCEEEEEEEEEEEEEEEESCTTCCGGGEEEHHHHHHTSCHH
T ss_pred             CCCEEEEEeCCCCcEEEEEECCCCcccccceeeccccccCCHH
Confidence            9999999777889999999999998777777778899888854

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.88  E-value=2.7e-22  Score=200.21  Aligned_cols=275  Identities=12%  Similarity=0.068  Sum_probs=164.3

Q ss_pred             ceEEEEEEecCCce--ecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeec
Q 046186           66 GVAVVRHTIRQKGL--LLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFR  142 (436)
Q Consensus        66 gv~~~r~~i~pg~l--~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~  142 (436)
                      .+++...++.||+.  .+||||. ..|++||++|    ++.+.+...+                       ...+...|+
T Consensus        45 ~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G----~~~~~~~~~~-----------------------~~~~~~~l~   97 (348)
T d1juha_          45 AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKG----SFQLWAQSGN-----------------------ETQQTRVLS   97 (348)
T ss_dssp             SCEEEEEEECCCSSCSSCCEECSSCEEEEEEEES----EEEEEEEETT-----------------------SCCEEEEEE
T ss_pred             eEEEEEEeeCCCCCCCCCccccccceEEEEEEee----EEEEEEeccC-----------------------CceEEEEeC
Confidence            38899999999985  5789998 7899999999    9998775432                       123468999


Q ss_pred             cCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHH
Q 046186          143 QGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTR  222 (436)
Q Consensus       143 ~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~  222 (436)
                      +||++.+|+|++|++.|.++ +..++.++..        +.+..||-+..                    .+..+..+..
T Consensus        98 ~GD~~~~P~g~~H~~~n~~~-~~~~l~v~~p--------g~~e~~f~~~~--------------------~~~~~~~~~~  148 (348)
T d1juha_          98 SGDYGSVPRNVTHTFQIQDP-DTEMTGVIVP--------GGFEDLFYYLG--------------------TNATDTTHTP  148 (348)
T ss_dssp             TTCEEEECTTEEEEEEECST-TEEEEEEEES--------SCTTHHHHHHS--------------------EECCCTTCCS
T ss_pred             CCCEEEECCCCeEeeEeCCC-CcEEEEEECC--------CcHHHHHHhhC--------------------CchhccCCcc
Confidence            99999999999999999976 4677776663        34567776544                    2333333333


Q ss_pred             HHhhhcC------CCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCC-CCccccee
Q 046186          223 ILAEAFN------VDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDN-GVEETMCT  295 (436)
Q Consensus       223 vLa~af~------v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~n-g~ee~~~~  295 (436)
                      ++...|.      ++....+++....     +....+...  .+....         ...+....|....+ ...+....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~p  212 (348)
T d1juha_         149 YIPSSSDSSSTTGPDSSTISTLQSFD-----VYAELSFTP--RTDTVN---------GTAPANTVWHTGANALASTAGDP  212 (348)
T ss_dssp             SCCC--------------CGGGGGGT-----CEECTTCCC--CCCCBT---------TEESSSSCSSSSCCCCCSSTTCC
T ss_pred             cccccccchhhccCChhhhccccccc-----cccccccCC--cccccc---------ccccccccccccccccccccCcc
Confidence            3333333      3333334433221     222211100  000000         00000000000001 11111111


Q ss_pred             eecccccCCCCCCCccc-CCCeEEEE---eCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEE
Q 046186          296 MKLRENIGDPSKADIYT-QGAGHITT---LNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVV  371 (436)
Q Consensus       296 ~~~~~Ni~~~~~~d~~~-~~~G~~~~---~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv  371 (436)
                      +.+..+.    .+...+ ..+|.+..   .+....+...  .+++..+.+.||++++||||+++++|.||++|+++++|.
T Consensus       213 ~~~~~~~----~~~~~~~~~~g~i~~~~~~~~~t~~~~~--~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~  286 (348)
T d1juha_         213 YFIANGW----GPKYLNSQYGYQIVAPFVTATQAQDTNY--TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIG  286 (348)
T ss_dssp             EEECTTC----SCEEEECTTSCEEEEEEECHHHHGGGCE--EEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEET
T ss_pred             eEeeccc----CcccccccCCceEEeeeecccccCCccc--ceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeC
Confidence            1222111    111111 23344332   3334455444  789999999999999999999999999999999999996


Q ss_pred             eCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCC-ccccc
Q 046186          372 DSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAM-ISPLS  423 (436)
Q Consensus       372 ~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~-~~~La  423 (436)
                      +.  + .  .+|++||+++||+|.+|..........++.|...+... ..+++
T Consensus       287 ~~--~-~--~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  334 (348)
T d1juha_         287 DY--A-A--TELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSGSDGLDQNLVN  334 (348)
T ss_dssp             TS--C-C--EEECTTCEEEECTTCCEEEEESSSSEEEEEEEESSSSHHHHHHH
T ss_pred             Cc--c-e--EEecCCCEEEECCCCcEEEEeCCCCcEEEEEEcCCCchHHHHHh
Confidence            52  2 2  34999999999999999985545567888887766654 34554

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.86  E-value=5.3e-22  Score=180.87  Aligned_cols=125  Identities=10%  Similarity=0.193  Sum_probs=103.3

Q ss_pred             CCcccCCCeEEEEeCC--CCCCccccc-cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEec
Q 046186          308 ADIYTQGAGHITTLNS--FNLPVLRWI-QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVR  384 (436)
Q Consensus       308 ~d~~~~~~G~~~~~~~--~~~P~L~~l-~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~  384 (436)
                      .+++++.+|+++.++.  .+.+.|..| ++++.+++|+||||+.||| ++|+||.||++|+|+++|+++++..  ..+|+
T Consensus        12 ~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~v~~v~~~~~~--~~~l~   88 (178)
T d1dgwa_          12 LTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SDSDLLVLVLEGQAILVLVNPDGRD--TYKLD   88 (178)
T ss_dssp             EEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEE-ESSEEEEEEEESEEEEEEEETTEEE--EEEEE
T ss_pred             ccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCccccccc-CCCCEEEEEEEeEEEEEEecCCceE--EEEec
Confidence            4578999999988864  556778877 5999999999999999995 8999999999999999999987654  45699


Q ss_pred             CccEEEEcCCCEEEE-EeCC-CcEEEEEEEecCCC---Ccccccc----ccccccccCCC
Q 046186          385 RGQIMVVPQNFAVVK-RAGG-AEFEWISFKTNDNA---MISPLSG----RTSVMRGKGRR  435 (436)
Q Consensus       385 ~Gdv~vVP~g~~h~~-~ag~-e~~~~l~f~~s~~p---~~~~LaG----~~sv~~~lp~e  435 (436)
                      +|||++||+|++|++ |.++ +.|.+++|....+.   ..+|+++    ..|+|++||.|
T Consensus        89 ~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~~svl~~~~~e  148 (178)
T d1dgwa_          89 QGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKN  148 (178)
T ss_dssp             TTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHH
T ss_pred             CCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCcccHHHhCCHH
Confidence            999999999999998 6654 79999999876553   2334433    56899999864

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.86  E-value=7.7e-22  Score=178.55  Aligned_cols=124  Identities=16%  Similarity=0.275  Sum_probs=103.4

Q ss_pred             CcccCCCeEEEEeCC--CCCCccccc-cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecC
Q 046186          309 DIYTQGAGHITTLNS--FNLPVLRWI-QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRR  385 (436)
Q Consensus       309 d~~~~~~G~~~~~~~--~~~P~L~~l-~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~  385 (436)
                      .++++.+|+++.++.  .+.|.|+.+ ++++++++|+||||+.|| |++|+||.||++|+|++++|++++...+  +|++
T Consensus        16 ~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph-~~~a~ei~yV~~G~g~v~~v~~~~~~~~--~l~~   92 (170)
T d1uija1          16 TLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSY--NLHP   92 (170)
T ss_dssp             EEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEE--EECT
T ss_pred             cccccCCCcEEEEecccccchhhcchhheEEEEEEecCCcccccc-cCCCCEEEEEEEEEEEEEEEeCCCcEEE--EecC
Confidence            467899999999986  557788887 599999999999999999 5899999999999999999999876654  4999


Q ss_pred             ccEEEEcCCCEEEE-EeCC-CcEEEEEEEecCC-C--Cccccccc----cccccccCCC
Q 046186          386 GQIMVVPQNFAVVK-RAGG-AEFEWISFKTNDN-A--MISPLSGR----TSVMRGKGRR  435 (436)
Q Consensus       386 Gdv~vVP~g~~h~~-~ag~-e~~~~l~f~~s~~-p--~~~~LaG~----~sv~~~lp~e  435 (436)
                      |||++||+|++|++ |.++ +.+.++++....+ +  ...+++|.    .|+|+++|.|
T Consensus        93 GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~~~~~svl~~~~~e  151 (170)
T d1uija1          93 GDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHN  151 (170)
T ss_dssp             TEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGGSCHH
T ss_pred             CcEEEECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccCCCcccHhHhCCHH
Confidence            99999999999998 6664 6899988875433 2  34555554    5999999864

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.84  E-value=1.9e-21  Score=180.38  Aligned_cols=127  Identities=15%  Similarity=0.158  Sum_probs=106.9

Q ss_pred             CCcccCCCeEEEEeCC--CCCCccccc-cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEE----E
Q 046186          308 ADIYTQGAGHITTLNS--FNLPVLRWI-QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVY----D  380 (436)
Q Consensus       308 ~d~~~~~~G~~~~~~~--~~~P~L~~l-~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~----~  380 (436)
                      .+.|++.+|+++.++.  .+.+.|+.| ++.+..+.|+||||+.|||+ +|++|+||++|+|+++||+|++...+    .
T Consensus        13 ~~~~~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~-nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~   91 (200)
T d2phla1          13 NTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRREYFFLTS   91 (200)
T ss_dssp             EEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETTTEEEEEEEES
T ss_pred             cceeECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecC-CCCEEEEEEeeeEEEEEEECCCCceeehhhc
Confidence            3578899999999987  456777766 68999999999999999985 89999999999999999999987654    4


Q ss_pred             EEecCccEEEEcCCCEEEE-EeC-CCcEEEEEEEecCCC---Cccccccc---cccccccCCC
Q 046186          381 GEVRRGQIMVVPQNFAVVK-RAG-GAEFEWISFKTNDNA---MISPLSGR---TSVMRGKGRR  435 (436)
Q Consensus       381 ~~l~~Gdv~vVP~g~~h~~-~ag-~e~~~~l~f~~s~~p---~~~~LaG~---~sv~~~lp~e  435 (436)
                      .+|++||||+||+|++|++ |.+ +++|.++++..+.|.   ...+|||.   .|+|++++.|
T Consensus        92 ~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~~f~~e  154 (200)
T d2phla1          92 DNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKH  154 (200)
T ss_dssp             SCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGGSCHH
T ss_pred             cCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhHcCCHH
Confidence            4699999999999999988 666 479999998866654   24578885   4999999864

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.83  E-value=1.2e-20  Score=175.26  Aligned_cols=126  Identities=17%  Similarity=0.312  Sum_probs=102.9

Q ss_pred             CCCcccCCCeEEEEeCCCCC--Cccccc-cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEe
Q 046186          307 KADIYTQGAGHITTLNSFNL--PVLRWI-QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEV  383 (436)
Q Consensus       307 ~~d~~~~~~G~~~~~~~~~~--P~L~~l-~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l  383 (436)
                      ..++|++.+|+++.++..+.  +.|+.+ ++++++++|+||||+.||| ++|++|.||++|+|+++++++++...++  |
T Consensus        10 ~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~a~ev~yV~~G~g~~~~v~~~~~~~~~--l   86 (203)
T d1uika1          10 FQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHH-ADADYLIVILNGTAILTLVNNDDRDSYN--L   86 (203)
T ss_dssp             EEEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEE-ESEEEEEEEEESEEEEEEECSSCEEEEE--E
T ss_pred             ccCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCcccccc-CCCcEEEEEEEEEEEEEEEeCCCeEEEE--e
Confidence            35688999999999987543  345554 8999999999999999996 5999999999999999999998776554  9


Q ss_pred             cCccEEEEcCCCEEEE-EeCC-CcEEEEEEEecCCC---Cccccccc----cccccccCCC
Q 046186          384 RRGQIMVVPQNFAVVK-RAGG-AEFEWISFKTNDNA---MISPLSGR----TSVMRGKGRR  435 (436)
Q Consensus       384 ~~Gdv~vVP~g~~h~~-~ag~-e~~~~l~f~~s~~p---~~~~LaG~----~sv~~~lp~e  435 (436)
                      ++|||++||+|++|++ |.++ +.|.+++|....|.   ...|++|.    .|+|++++.|
T Consensus        87 ~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~gf~~~  147 (203)
T d1uika1          87 QSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKN  147 (203)
T ss_dssp             ETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHH
T ss_pred             cCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhHhCCHH
Confidence            9999999999999988 6665 78999998765543   24455443    4899999854

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.4e-19  Score=172.68  Aligned_cols=243  Identities=17%  Similarity=0.156  Sum_probs=152.5

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      ++.+...+|.||+...+|+|+..++.||++|    +|.+.++.                           .+...+++||
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H~~~e~~~vl~G----~g~~t~~~---------------------------~~~~~~~~Gd  101 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRHNQSALRFIVEG----KGAFTAVD---------------------------GERTPMNEGD  101 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEESSCEEEEEEEC----SSCEEEET---------------------------TEEEECCTTC
T ss_pred             cceeeeEEECCCCccccccCchhheEEEEEe----eEEEEEec---------------------------CEEEEecCCC
Confidence            6888999999999999999999999999999    98877653                           2357899999


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHHh
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRILA  225 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vLa  225 (436)
                      ++++|+|+.|...|.|+++++++.++|.....+ |.                               ..++..++.+...
T Consensus       102 ~~~~P~~~~H~~~n~g~e~~~~l~~~d~pl~~~-l~-------------------------------~~f~~~~~~~~~~  149 (308)
T d2d40a1         102 FILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNI-LG-------------------------------CGFAEDYPEEQQP  149 (308)
T ss_dssp             EEEECTTSCEEEECCSSSCEEEEEEECHHHHHH-HT-------------------------------CCCEEECC--CCC
T ss_pred             EEEeCCCceEEeEECCCCCEEEEEEeccchhhh-cC-------------------------------eeeeccCcccccc
Confidence            999999999999999999999999887432111 00                               1333344444444


Q ss_pred             hhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccCCC
Q 046186          226 EAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIGDP  305 (436)
Q Consensus       226 ~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~~~  305 (436)
                      ..+..+. ...+.. .     ..+.....-..-.|...     +..++..           +         .+.+-... 
T Consensus       150 ~~~~~~~-~~~~~~-~-----~~~~~~~~~~~~~~~~~-----~~~~~~~-----------~---------~L~~~~~~-  196 (308)
T d2d40a1         150 VTRKEGD-YLPRYA-A-----NMLPLRHQTGNSSPIFN-----YRYDRSR-----------E---------VLHDLTRL-  196 (308)
T ss_dssp             CCSCTTT-HHHHHS-S-----SEECSSCCCCSSCSCCE-----ECHHHHH-----------H---------HHHHHHTT-
T ss_pred             cccCccc-hhhhcc-c-----ccccccccccccCcccc-----cchhhHH-----------H---------HHHHHHhc-
Confidence            4333222 222211 0     11111110000001000     0000000           0         00000000 


Q ss_pred             CCCCcccCCCeEEEEeCCCC-CCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEec
Q 046186          306 SKADIYTQGAGHITTLNSFN-LPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVR  384 (436)
Q Consensus       306 ~~~d~~~~~~G~~~~~~~~~-~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~  384 (436)
                      ..++  ...++.+...++.+ .+.+.  .|.+....|.||++..+||| +..++.||++|++++.|   +|++ +  +++
T Consensus       197 ~~~~--~~~g~~v~~~~~~~~~~~~~--t~~~~~~~l~pG~~~~~h~h-~~~~~~~v~~G~g~~~v---~~~~-~--~~~  265 (308)
T d2d40a1         197 GDAD--EWDGYKMRYVNPVTGGYPMP--SMGAFLQLLPKGFASRVART-TDSTIYHVVEGSGQVII---GNET-F--SFS  265 (308)
T ss_dssp             SCCB--TTTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCBEE-SSCEEEEEEEEEEEEEE---TTEE-E--EEE
T ss_pred             cCCC--CCCceEEEeeccccccCccc--eeEEEEEEccCCCccCCccC-ChheEEEEEeCcEEEEE---CCEE-E--EEe
Confidence            1122  22466666666644 46677  67778889999999999999 56799999999999988   3443 4  499


Q ss_pred             CccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCC
Q 046186          385 RGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAM  418 (436)
Q Consensus       385 ~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~  418 (436)
                      +||+|+||.++.|...+.. +..++.+  ++.|.
T Consensus       266 ~GD~~~vP~~~~h~~~~~~-d~~l~~v--~D~p~  296 (308)
T d2d40a1         266 AKDIFVVPTWHGVSFQTTQ-DSVLFSF--SDRPV  296 (308)
T ss_dssp             TTCEEEECTTCCEEEEEEE-EEEEEEE--ESHHH
T ss_pred             CCCEEEeCCCCeEEEEcCC-CeEEEEE--cCHHH
Confidence            9999999999999885433 3333333  45554

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.78  E-value=2.7e-18  Score=171.39  Aligned_cols=251  Identities=17%  Similarity=0.225  Sum_probs=153.5

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      -.+.+....|.||....+|+|++.++.||++|    +|.+.+|.                           .+...+++|
T Consensus        85 ~~l~~~~~~l~PGe~~~~H~H~~~~~~~vi~G----~g~~t~v~---------------------------g~~~~~~~G  133 (351)
T d2phda1          85 PTMWAGIQYLGPRETAPEHRHSQNAFRFVVEG----EGVWTVVN---------------------------GDPVRMSRG  133 (351)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEEC----EEEEEEET---------------------------TEEEEEETT
T ss_pred             chhhhheEEECCCCcCCccccccceeEEEEEC----CcEEEEEC---------------------------CEEEEEeCC
Confidence            46778889999999999999999999999999    99887763                           235799999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHH
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRIL  224 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vL  224 (436)
                      |+|++|+|+.|+..|.|+++++++.++|..-... ++.   .|+-.+.                            ... 
T Consensus       134 D~~~~P~~~~H~~~n~~d~~~~~l~~~d~pl~~~-l~~---~f~e~~~----------------------------~~~-  180 (351)
T d2phda1         134 DLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQQ-MDV---GFFEFGS----------------------------DRV-  180 (351)
T ss_dssp             CEEEECTTCCEEEEECSSSCEEEEEEECHHHHHH-TTC---CCEEECC----------------------------C---
T ss_pred             CEEEeCCCceEEEEEcCCCCEEEEEeecCchhhh-ccc---ccccccc----------------------------ccc-
Confidence            9999999999999999999999999887542111 111   1221111                            000 


Q ss_pred             hhhcCCCHHHHHHHhhcCCCceeEEEEcC-ceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccC
Q 046186          225 AEAFNVDERLVRRLRSEKDYRGAIVTVRG-QLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIG  303 (436)
Q Consensus       225 a~af~v~~~~v~~l~~~~~~rG~Iv~~~~-~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~  303 (436)
                      ......+....++......    ...+.. ......|...     +..++.+..               ...+....  .
T Consensus       181 ~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~sp~~~-----yp~~~~~~a---------------l~~~~~~~--~  234 (351)
T d2phda1         181 TDYATPNFSRGERLWCHPG----LRPLSGLQNTVASPIGA-----YRWEFTDRA---------------LTEQLLLE--D  234 (351)
T ss_dssp             CCCCCCSSCHHHHHHCSTT----EEEGGGCSCCSSCSCSE-----ECHHHHHHH---------------HHHHHHHH--H
T ss_pred             ccccCCccchhhhhccccc----cCcccccccccCCCccc-----CchHHHHhh---------------hhhhhhcc--c
Confidence            0001111122222222111    112111 0000111100     000000000               00000000  0


Q ss_pred             CCCCCCcccCCCeEEEEeCCC-CCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEE
Q 046186          304 DPSKADIYTQGAGHITTLNSF-NLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGE  382 (436)
Q Consensus       304 ~~~~~d~~~~~~G~~~~~~~~-~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~  382 (436)
                      + ..+......++.+..+++. ..+++.  .|++....|.||.+..||+| ++.+|.||++|+|+++|   +|. .+  +
T Consensus       235 ~-~~~~~~~~g~~~l~yvnp~tg~~~~~--t~~~~~~~l~pG~~~~~hrh-~~~~v~~vi~G~g~~~i---~~~-~~--~  304 (351)
T d2phda1         235 E-GQPATVAPGHAAIRYVNPTTGGDVMP--TLRCEFHRLRAGTETATRNE-VGSTVFQVFEGAGAVVM---NGE-TT--K  304 (351)
T ss_dssp             T-TCSCSSBTTEEEEEEBCTTTSSBSBT--TBEEEEEEECTTCBCCCEEE-SSCEEEEEEESCEEEEE---TTE-EE--E
T ss_pred             c-cccccccCcceeEEEeccccCCCcCC--cceEEEEEecCCCcCCCccc-cCcEEEEEEeCcEEEEE---CCE-EE--E
Confidence            0 1111122355677777765 478888  67778888999999999999 56799999999999988   233 35  4


Q ss_pred             ecCccEEEEcCCCEEEEEeCCCcEEEEEEEecCCCC
Q 046186          383 VRRGQIMVVPQNFAVVKRAGGAEFEWISFKTNDNAM  418 (436)
Q Consensus       383 l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~~p~  418 (436)
                      +++||||+||.+++|...+. ++..++.|  ++.|.
T Consensus       305 ~~~gDvf~vP~~~~h~~~n~-~~~~Lf~~--~D~P~  337 (351)
T d2phda1         305 LEKGDMFVVPSWVPWSLQAE-TQFDLFRF--SDAPI  337 (351)
T ss_dssp             ECTTCEEEECTTCCEEEEES-SCEEEEEE--ESHHH
T ss_pred             EcCCCEEEeCCCCcEEEecC-CCeEEEEE--CCHHH
Confidence            99999999999999998553 34544444  55554

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=3.2e-18  Score=168.73  Aligned_cols=248  Identities=11%  Similarity=0.058  Sum_probs=147.0

Q ss_pred             cceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..+++.++++.||+-..+|+|. +.|++||++|    ++.+.+                            ..+...|++
T Consensus        40 ~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G----~~~~~~----------------------------~~~~~~l~~   87 (330)
T d1y3ta1          40 DLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDG----KLELTL----------------------------DGERYLLIS   87 (330)
T ss_dssp             SSEEEEEEEECTTCEEEEEECTTCCEEEEEEES----CEEEEE----------------------------TTEEEEECT
T ss_pred             CcEEEEEEEECCCCcCCcccCCCceEEEEEeCC----EEEEEE----------------------------CCEEEEEcC
Confidence            3589999999999999999997 8899999999    888864                            124689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCC-ChhhhhHhhhhhhcccccccccccccCCHH
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGN-PHQEFQQQRQQERFGGHQQCNNVFCGFDTR  222 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~-~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~  222 (436)
                      ||++++|+|++|++.|.+++ ..++.++....        +..||.+.. +.                .........+. 
T Consensus        88 Gd~~~~p~~~~H~~~n~~~~-~~~l~~~~p~~--------~~~~~~~~~~~~----------------~~~~~~~~~~~-  141 (330)
T d1y3ta1          88 GDYANIPAGTPHSYRMQSHR-TRLVSYTMKGN--------VAHLYSVIGNPY----------------DHAEHPPYASE-  141 (330)
T ss_dssp             TCEEEECTTCCEEEEECSTT-EEEEEEEETTS--------STHHHHHHSEEC----------------SCSSCCSSCCC-
T ss_pred             CCEEEeCCCCeEEEEEcCCC-eEEEEEECCcc--------HHHhhhhhceec----------------ccccCCccccc-
Confidence            99999999999999999874 55555565332        233443211 00                00000000010 


Q ss_pred             HHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeeccccc
Q 046186          223 ILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENI  302 (436)
Q Consensus       223 vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni  302 (436)
                            ++..+...+   ... ...+.......  ..+....               .    ....+.+  +.  ..+.+
T Consensus       142 ------~~~~~~~~~---~~~-~~~~~~~~~~~--~~~~~~~---------------~----~~~~~p~--~~--~~~~~  186 (330)
T d1y3ta1         142 ------EVSNERFAE---AAA-VATIVFLDEAK--PACSAKL---------------A----ELTELPD--GA--VPYVL  186 (330)
T ss_dssp             ------CCTTCTTGG---GTS-SCEECCCCCCC--SSCSCEE---------------C----CBCSCCS--SS--CCEEE
T ss_pred             ------ccccccccc---ccc-ccccccccccc--ccccccc---------------c----ccccCCc--cc--eeeEE
Confidence                  111111111   111 11111111110  0000000               0    0000000  00  00111


Q ss_pred             CCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEE
Q 046186          303 GDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGE  382 (436)
Q Consensus       303 ~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~  382 (436)
                      .. ...+.+. .+|..+.+....-....  .+++..+.+.||+...||||+...|+.||++|++++.+ +  |.   ...
T Consensus       187 ~~-~~g~~~~-~~g~~~~~~~~~~~t~~--~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v-~--~~---~~~  256 (330)
T d1y3ta1         187 ES-GEGDRLL-TGDQLHRIVAAQKNTDG--QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT-D--GQ---EIQ  256 (330)
T ss_dssp             CT-TCSEEEE-ETTEEEEEEECGGGTTT--SCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE-T--TE---EEE
T ss_pred             Ec-ccCceEe-cCCceEEEcCCCcccCC--cEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE-C--CE---EEE
Confidence            11 2222222 22333333323333333  58888999999999999999999999999999999976 2  33   245


Q ss_pred             ecCccEEEEcCCCEEEEEeCCCcEEEEEEEecC
Q 046186          383 VRRGQIMVVPQNFAVVKRAGGAEFEWISFKTND  415 (436)
Q Consensus       383 l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~~s~  415 (436)
                      +++||+++||+|.+|...+..+++.++.+++-+
T Consensus       257 ~~~Gd~~~vP~g~~H~~~~~~~~~~~l~~~~p~  289 (330)
T d1y3ta1         257 LNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPG  289 (330)
T ss_dssp             ECTTCEEEECTTCCEEEEECSSSEEEEEEEESS
T ss_pred             eCCCCEEEECcCCcEEeEeCCCCeEEEEEECCc
Confidence            999999999999999985555689999987654

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.75  E-value=2.9e-17  Score=164.09  Aligned_cols=245  Identities=13%  Similarity=0.038  Sum_probs=159.7

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      .+.+....|.||....+|+|++.++.||++|    +|...+|.                           .+...+++||
T Consensus        84 ~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G----~g~~t~v~---------------------------ge~~~~~~GD  132 (355)
T d3bu7a1          84 WLFSGIQTMKAGERAGAHRHAASALRFIMEG----SGAYTIVD---------------------------GHKVELGAND  132 (355)
T ss_dssp             TBEEEEEEECTTCBCCCEEESSCEEEEEEEC----SCEEEEET---------------------------TEEEEECTTC
T ss_pred             hhhhheEeeCCCCcCcccccccceeEEEEEC----CcEEEEEC---------------------------CEEEEeeCCC
Confidence            5888999999999999999999999999999    99877763                           2347899999


Q ss_pred             EEEeCCCCeEEEecc-CCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcccccccccccccCCHHHH
Q 046186          146 IFALPAGVAHWCYNE-GSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVFCGFDTRIL  224 (436)
Q Consensus       146 v~~iPaG~~h~~~N~-g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~~gf~~~vL  224 (436)
                      +|++|+|+.|...|. ++++++++.+.|..-.         .|+-                       .++|...+.++.
T Consensus       133 ~~~~P~~~~H~h~n~~~~~~~~~l~~~D~Pl~---------~~l~-----------------------~~f~e~~p~~~~  180 (355)
T d3bu7a1         133 FVLTPNGTWHEHGILESGTECIWQDGLDIPLT---------NCLE-----------------------ANFYEVHPNDYQ  180 (355)
T ss_dssp             EEEECTTCCEEEEECTTCCCEEEEEEECHHHH---------HHTT-----------------------CCCEEECTTSSC
T ss_pred             EEEeCCCceEeeecCCCCCcEEEEEecchHHH---------hhcc-----------------------ceecccCchhcc
Confidence            999999999999996 5678888776663211         1111                       244445555555


Q ss_pred             hhhcCCCHHHHHHHhhcCCCceeEEEEcCcee-ccCCCCcccccccccchhhhhhcccccCCCCCCcccceeeecccccC
Q 046186          225 AEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQ-VARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTMKLRENIG  303 (436)
Q Consensus       225 a~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~~~~~Ni~  303 (436)
                      ...+..+....+.....      +..+..... ...|...-  .     .++.             .+.     + ..+.
T Consensus       181 ~~~~~~~~s~~~~~~~~------~~p~~~~~~~~~sp~~~y--p-----w~~~-------------~~a-----l-~~~~  228 (355)
T d3bu7a1         181 TTDIPLNDSPLTYGGPA------LLPQLDKWDKPYSPLLKY--S-----WEPT-------------YEA-----L-LNYA  228 (355)
T ss_dssp             CCCCCTTHHHHHHCSTT------EEESSCCCCCSSCSCCEE--C-----HHHH-------------HHH-----H-HHHH
T ss_pred             cccCCCccchhhhcccc------cccccccCCcccCccccc--c-----cccc-------------hHH-----H-HHHH
Confidence            55566555554442211      111110000 00010000  0     0000             000     0 0011


Q ss_pred             CCCCCCcccCCCeEEEEeCCCC-CCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEE
Q 046186          304 DPSKADIYTQGAGHITTLNSFN-LPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGE  382 (436)
Q Consensus       304 ~~~~~d~~~~~~G~~~~~~~~~-~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~  382 (436)
                        ...+.....++.+..+++.+ .+++.  .|++....|.||....||+|+ +.++.||++|+|+++|   +|. .++  
T Consensus       229 --~~~~~~~~~g~~l~y~nP~tg~~~~~--ti~~~~~~l~pG~~~~~hrH~-~~~v~~v~~G~g~~~i---~g~-~~~--  297 (355)
T d3bu7a1         229 --KASDGSPYDGLILRYTNPQTGGHPML--TMGASMQMLRPGEHTKAHRHT-GNVIYNVAKGQGYSIV---GGK-RFD--  297 (355)
T ss_dssp             --TTCCCBTTTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCEEES-SCEEEEEEECCEEEEE---TTE-EEE--
T ss_pred             --hcCCCCCCCceEEEeccccccCCCcc--eeeEEEEEECCCCccCCcCcc-CcEEEEEEECcEEEEE---CCE-EEE--
Confidence              12222334677788877654 47777  678888899999999999996 4589999999999988   333 354  


Q ss_pred             ecCccEEEEcCCCEEEE-EeCCCc-EEEEEEEecCCCC
Q 046186          383 VRRGQIMVVPQNFAVVK-RAGGAE-FEWISFKTNDNAM  418 (436)
Q Consensus       383 l~~Gdv~vVP~g~~h~~-~ag~e~-~~~l~f~~s~~p~  418 (436)
                      +++||+|+||.+.+|.. |.+++. +.++.|  ++.|.
T Consensus       298 ~~~GDv~~vP~~~~h~~~N~s~~e~~~Lf~~--~D~P~  333 (355)
T d3bu7a1         298 WSEHDIFCVPAWTWHEHCNTQERDDACLFSF--NDFPV  333 (355)
T ss_dssp             ECTTCEEEECTTCCEEEEECCSSCCEEEEEE--ESHHH
T ss_pred             eeCCCEEEeCCCCcEEeecCCCCCcEEEEEe--cChHH
Confidence            99999999999999987 777654 444444  45554

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.71  E-value=9.1e-16  Score=145.94  Aligned_cols=202  Identities=14%  Similarity=0.101  Sum_probs=135.7

Q ss_pred             CccccccceEEEEEEecCCceec-Ceeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccc
Q 046186           59 HEQFQCAGVAVVRHTIRQKGLLL-PQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQ  136 (436)
Q Consensus        59 ~p~l~~~gv~~~r~~i~pg~l~~-Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~  136 (436)
                      .|.+ ++++.+..++|.||+-.. ||+|. ..|++||++|    ++.+.+-                            .
T Consensus        41 sp~~-Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G----~~~~~~~----------------------------~   87 (250)
T d1sefa_          41 SPKL-GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDG----RLRVSDG----------------------------Q   87 (250)
T ss_dssp             CGGG-TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEES----EEEEECS----------------------------S
T ss_pred             Cccc-CCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEee----EEEEEEC----------------------------C
Confidence            4555 467899999999999654 44445 6789999999    9988751                            3


Q ss_pred             eeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhccccccccccc
Q 046186          137 KIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVF  216 (436)
Q Consensus       137 k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~  216 (436)
                      +.+.|++||.+++|+|++|.+.|.+++++.++.+-......   +         |..                   ... 
T Consensus        88 ~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~~~y~~~---~---------~~~-------------------p~~-  135 (250)
T d1sefa_          88 ETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPL---A---------GHQ-------------------PYK-  135 (250)
T ss_dssp             CEEEEETTEEEEECTTSCCEEEESSSSCEEEEEEEEECCCC---T---------TCC-------------------CCC-
T ss_pred             EEEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEEEEecccc---c---------ccc-------------------ccc-
Confidence            46899999999999999999999999999988763311110   0         000                   000 


Q ss_pred             ccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceee
Q 046186          217 CGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTM  296 (436)
Q Consensus       217 ~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~  296 (436)
                                                     +.....+.   .|..             ..          +        
T Consensus       136 -------------------------------~~~~~~~~---e~~~-------------~~----------~--------  150 (250)
T d1sefa_         136 -------------------------------VVGSIHDQ---QPEE-------------YE----------G--------  150 (250)
T ss_dssp             -------------------------------EEEEGGGS---CCEE-------------GG----------G--------
T ss_pred             -------------------------------cccccccc---cccc-------------cC----------C--------
Confidence                                           00000000   0000             00          0        


Q ss_pred             ecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC
Q 046186          297 KLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR  376 (436)
Q Consensus       297 ~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~  376 (436)
                                      ....+...+.+.    -...++.+..+.+.||+..+.|+|....|+.||++|++.+.+   +|+
T Consensus       151 ----------------~~~~~~~~~~p~----~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~---~~~  207 (250)
T d1sefa_         151 ----------------MTDVLLWSLLPK----EFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE  207 (250)
T ss_dssp             ----------------CTTEEEEECSCS----STTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE
T ss_pred             ----------------ccccceEEecCc----cccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE---CCE
Confidence                            000111111111    111268888999999999987776677899999999999887   233


Q ss_pred             eEEEEEecCccEEEEcCCCEEEE-EeC-CCcEEEEEEEecCC
Q 046186          377 SVYDGEVRRGQIMVVPQNFAVVK-RAG-GAEFEWISFKTNDN  416 (436)
Q Consensus       377 ~~~~~~l~~Gdv~vVP~g~~h~~-~ag-~e~~~~l~f~~s~~  416 (436)
                       .+  .+++||+++||++.+|.. |.| ++.+.|+.+++-.+
T Consensus       208 -~~--~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~~k~~~~  246 (250)
T d1sefa_         208 -WY--PVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDANR  246 (250)
T ss_dssp             -EE--EEETTCEEEECTTCCEEEEEECSSSCEEEEEEEECSS
T ss_pred             -EE--EecCCCEEEECCCCCEEeEcCCCCCcEEEEEEecCCC
Confidence             24  499999999999999997 888 47889988775543

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=1.8e-15  Score=145.98  Aligned_cols=216  Identities=13%  Similarity=0.139  Sum_probs=145.7

Q ss_pred             EEEEeCCCCccccc-cceEEEEEEecCCce-ecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccC
Q 046186           51 VVETWDPGHEQFQC-AGVAVVRHTIRQKGL-LLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESA  127 (436)
Q Consensus        51 ~~e~~~~~~p~l~~-~gv~~~r~~i~pg~l-~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~  127 (436)
                      .+++|--..|.+.. ..+++..++|+|||- ..|+.++ +.+++||++|    ++.+.+                     
T Consensus        49 ~~~~~vl~~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G----~~~l~~---------------------  103 (273)
T d1sq4a_          49 NMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEG----ELSLTL---------------------  103 (273)
T ss_dssp             EEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEES----CEEEEE---------------------
T ss_pred             CceEEEECCcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeC----EEEEEE---------------------
Confidence            35566555566553 469999999999985 5677666 7899999999    888874                     


Q ss_pred             CcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhcc
Q 046186          128 GRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFG  207 (436)
Q Consensus       128 ~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~  207 (436)
                             ..+.+.|++||.+++|+|+.|.+.|.+++++.++.+-.......            |                
T Consensus       104 -------~g~~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i~k~y~~~~------------g----------------  148 (273)
T d1sq4a_         104 -------QGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVD------------G----------------  148 (273)
T ss_dssp             -------SSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEEECCCCT------------T----------------
T ss_pred             -------CCEEEEecCCCEEEECCCCcEeeeecCCCCEEEEEEEecccccc------------c----------------
Confidence                   12468999999999999999999999999999887644322210            0                


Q ss_pred             cccccccccccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCC
Q 046186          208 GHQQCNNVFCGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDN  287 (436)
Q Consensus       208 ~~~~~~nv~~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~n  287 (436)
                                 .+..                    .   .++.-..++   .|....                       
T Consensus       149 -----------~~~p--------------------~---~~v~~~~dv---~p~~~~-----------------------  168 (273)
T d1sq4a_         149 -----------VPLP--------------------E---AFVTNEQDI---QPLVMP-----------------------  168 (273)
T ss_dssp             -----------CCCC--------------------C---CEEEEGGGS---CCEECS-----------------------
T ss_pred             -----------cccc--------------------c---ccccChhcc---Cccccc-----------------------
Confidence                       0000                    0   111111111   111000                       


Q ss_pred             CCcccceeeecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCcee-cccccCCCcEEEEEEeeeE
Q 046186          288 GVEETMCTMKLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMM-VPHWNLNAHSIMYAISGSC  366 (436)
Q Consensus       288 g~ee~~~~~~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~-~PHwh~~A~ei~yV~~G~g  366 (436)
                      +....  ....+  +.+|.                  ++  ..  +|.+..+.+.||+-. .+|+|+. .|++||++|++
T Consensus       169 ~~~~~--~~~~r--~~~p~------------------d~--~~--d~~~~i~~~~PG~~~~~~h~H~~-ee~~~vl~G~~  221 (273)
T d1sq4a_         169 DTEGR--WSTTR--FVDMS------------------DM--RH--DMHVNIVNFEPGGVIPFAETHVM-EHGLYVLEGKA  221 (273)
T ss_dssp             SGGGC--EEEEC--SSCTT------------------CT--TC--SEEEEEEEECSSSEESCCCCCSE-EEEEEEEECEE
T ss_pred             CCCce--eEEEE--eeCCc------------------cc--cc--ceEEEEEEEccCCcccccccccc-ceEEEEEccEE
Confidence            00000  00000  01111                  11  12  688889999999755 5899975 59999999999


Q ss_pred             EEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCCCc
Q 046186          367 HVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNAMI  419 (436)
Q Consensus       367 rv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p~~  419 (436)
                      ++.+   +|+   ...+++||++++|++.+|.+ +.|++++.||.++.-.+.+.
T Consensus       222 ~~~~---~~~---~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~~kd~nR~~~  269 (273)
T d1sq4a_         222 VYRL---NQD---WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRHMR  269 (273)
T ss_dssp             EEEE---TTE---EEEEETTCEEEEEESCCEEEECCSSSCEEEEEEEECSSCCC
T ss_pred             EEEE---CCE---EEEecCCCEEEECCCCCEEeEeCCCCCEEEEEEEEcCcCcc
Confidence            9987   233   24599999999999999998 88899999999987666544

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.63  E-value=2.7e-14  Score=135.34  Aligned_cols=77  Identities=9%  Similarity=-0.003  Sum_probs=66.1

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      +|.+..+.|.||+-...|.|....|+.||++|++.+.+   +|+   ...|++||++++|.+.+|.. |.|++++.||.+
T Consensus       164 ~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i---~~~---~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l~~  237 (245)
T d1sfna_         164 DFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EEN---YYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLY  237 (245)
T ss_dssp             SEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTE---EEEEETTCEEEECTTCCEEEEEESSSCEEEEEE
T ss_pred             ceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE---CCE---EEEecCCCEEEECCCCCEeeEeCCCCCEEEEEE
Confidence            67888999999999998876667799999999999987   223   34599999999999999998 888999999988


Q ss_pred             EecC
Q 046186          412 KTND  415 (436)
Q Consensus       412 ~~s~  415 (436)
                      ++-.
T Consensus       238 k~~~  241 (245)
T d1sfna_         238 KDMN  241 (245)
T ss_dssp             EECS
T ss_pred             ecCC
Confidence            8654

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.9e-14  Score=135.49  Aligned_cols=198  Identities=12%  Similarity=0.069  Sum_probs=129.2

Q ss_pred             CccccccceEEEEEEecCCceecCeeec--CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccc
Q 046186           59 HEQFQCAGVAVVRHTIRQKGLLLPQFSN--SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQ  136 (436)
Q Consensus        59 ~p~l~~~gv~~~r~~i~pg~l~~Ph~h~--a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~  136 (436)
                      .|.+ ++++.+..++|.||+-..+|+|.  .++++||++|    ++.+.+                            ..
T Consensus        44 sp~~-g~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G----~~~~~~----------------------------~~   90 (253)
T d1rc6a_          44 TPKL-GASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISG----NITAKA----------------------------EG   90 (253)
T ss_dssp             CGGG-TCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEES----EEEEEE----------------------------TT
T ss_pred             Cccc-CCceEEEEEEECCCcccCCcccCCCcEEEEEEEEC----EEEEEE----------------------------CC
Confidence            4554 36789999999999976665554  6779999999    998874                            12


Q ss_pred             eeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCCCCCcCCCCCceeeecCCChhhhhHhhhhhhccccccccccc
Q 046186          137 KIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVANNDNQLDRNPRKFHLAGNPHQEFQQQRQQERFGGHQQCNNVF  216 (436)
Q Consensus       137 k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~~nqld~~~~~f~laG~~~~~~~~~~~~~~~~~~~~~~nv~  216 (436)
                      +.+.|++||++++|+|..|.+.|.+++++.++.+-.......                                   +  
T Consensus        91 ~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~~~~~~~~-----------------------------------~--  133 (253)
T d1rc6a_          91 KTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVE-----------------------------------G--  133 (253)
T ss_dssp             EEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEECCCCT-----------------------------------T--
T ss_pred             EEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeccccCC-----------------------------------C--
Confidence            468999999999999999999999999999887644222110                                   0  


Q ss_pred             ccCCHHHHhhhcCCCHHHHHHHhhcCCCceeEEEEcCceeccCCCCcccccccccchhhhhhcccccCCCCCCcccceee
Q 046186          217 CGFDTRILAEAFNVDERLVRRLRSEKDYRGAIVTVRGQLQVARPPRTQSQREYEEDSSEYERSRGRYGGDNGVEETMCTM  296 (436)
Q Consensus       217 ~gf~~~vLa~af~v~~~~v~~l~~~~~~rG~Iv~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ng~ee~~~~~  296 (436)
                        ..++                        .+..-..++   .+...                       .+        
T Consensus       134 --~~~~------------------------~~~~~~~d~---~~~~~-----------------------~~--------  153 (253)
T d1rc6a_         134 --YAPW------------------------LVSGNASEL---ERIHY-----------------------EG--------  153 (253)
T ss_dssp             --CCCC------------------------CEEEEGGGS---CCC-----------------------------------
T ss_pred             --ccce------------------------eeccccccc---ccccc-----------------------cc--------
Confidence              0000                        000000000   00000                       00        


Q ss_pred             ecccccCCCCCCCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceec-ccccCCCcEEEEEEeeeEEEEEEeCCC
Q 046186          297 KLRENIGDPSKADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMV-PHWNLNAHSIMYAISGSCHVQVVDSYG  375 (436)
Q Consensus       297 ~~~~Ni~~~~~~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~-PHwh~~A~ei~yV~~G~grv~vv~~~G  375 (436)
                                      ..+.++..+.+.+.    ..++.+..+.+.||+-.. +|.| ...|+.||++|++.+++   +|
T Consensus       154 ----------------~~~~~~~~~~p~~~----~~~~~~~~~~~~PG~~~~~~h~h-~~ee~~~vl~G~g~~~i---~~  209 (253)
T d1rc6a_         154 ----------------MDDVILLDFLPKEL----GFDMNMHILSFAPGASHGYIETH-VQEHGAYILSGQGVYNL---DN  209 (253)
T ss_dssp             -------------------CEEEECSCCST----TCSEEEEEEEECTTCCBEEEEEE-SSCEEEEEEESEEEEES---SS
T ss_pred             ----------------cceeEEEEecCccc----cccEEEEEEEECCCceEeEEEeC-CceEEEEEeCCEEEEEE---CC
Confidence                            00011111111111    127888899999998765 6777 56699999999999887   33


Q ss_pred             CeEEEEEecCccEEEEcCCCEEEE-EeCC-CcEEEEEEEe
Q 046186          376 RSVYDGEVRRGQIMVVPQNFAVVK-RAGG-AEFEWISFKT  413 (436)
Q Consensus       376 ~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~-e~~~~l~f~~  413 (436)
                      +.   .++++||+++||++.||.. |.|. +.+.|+.++.
T Consensus       210 ~~---~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~~~~~  246 (253)
T d1rc6a_         210 NW---IPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD  246 (253)
T ss_dssp             CE---EEEETTCEEEECSSEEEEEEEC----CEEEEEEEE
T ss_pred             EE---EEecCCCEEEECCCCCEeeeeCCCCCcEEEEEEEC
Confidence            33   3499999999999999987 8886 5567777763

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.60  E-value=1.7e-15  Score=143.55  Aligned_cols=113  Identities=17%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             cCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCe--------------
Q 046186          312 TQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRS--------------  377 (436)
Q Consensus       312 ~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~--------------  377 (436)
                      ...+|.+-. ...+-|.|+.+|+++.++.|+|+||+.||+ .+|..|+||++|+|+++||+|.-..              
T Consensus        18 ~sE~G~~E~-wd~~~~qlqcagV~~~r~~I~p~gL~lP~y-s~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~   95 (245)
T d1od5a1          18 ESEGGLIET-WNSQHPELQCAGVTVSKRTLNRNGLHLPSY-SPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGS   95 (245)
T ss_dssp             EETTEEEEE-CCTTSHHHHHHTCEEEEEEECTTEEEEEEE-CSSCEEEEEEECEEEEEECCTTCCCCEEECC--------
T ss_pred             cccCCeEEe-CCCCCHHHhhcCceeEEEEEcCCccccccc-cCCCeEEEEEeCEEEEEEEeCCChhhhcchhhccccccc
Confidence            346785544 446669999999999999999999999999 7999999999999999999875322              


Q ss_pred             ----------EEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCC--------CCcccccccc
Q 046186          378 ----------VYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDN--------AMISPLSGRT  426 (436)
Q Consensus       378 ----------~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~--------p~~~~LaG~~  426 (436)
                                ....+|++||||+||+|.+||. |.++++|..|++....|        +...+|||..
T Consensus        96 ~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~  163 (245)
T d1od5a1          96 RSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNP  163 (245)
T ss_dssp             -------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCC
T ss_pred             ccccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCc
Confidence                      2234599999999999999998 88889999999875544        2346899963

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.59  E-value=2.4e-15  Score=141.99  Aligned_cols=113  Identities=19%  Similarity=0.179  Sum_probs=92.9

Q ss_pred             ccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC--------------
Q 046186          311 YTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR--------------  376 (436)
Q Consensus       311 ~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~--------------  376 (436)
                      +...||.+-.-| .+-+.|+-.|+++.+..|+|+||+.||+ .+|..|+||++|+|+++||+|.-.              
T Consensus        17 i~sE~G~~E~~d-~~~~qlqcagV~~~r~~I~p~gL~lP~y-~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~   94 (239)
T d1fxza1          17 IESEGGLIETWN-PNNKPFQCAGVALSRCTLNRNALRRPSY-TNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQ   94 (239)
T ss_dssp             EEETTEEEEECC-TTSHHHHHHTCEEEEEEECTTEEEEEEE-ESSCEEEEEEECCEEEEEECTTCCCC------------
T ss_pred             hccCCceEEecC-CCChhhhhccchhheeeeccCceeccee-cCCCeEEEEEeCEEEEEEecCCChhhhccccccccccc
Confidence            456889655544 5568999999999999999999999998 899999999999999999977421              


Q ss_pred             -------eEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEEEecCCC--------Cccccccc
Q 046186          377 -------SVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISFKTNDNA--------MISPLSGR  425 (436)
Q Consensus       377 -------~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f~~s~~p--------~~~~LaG~  425 (436)
                             ......|++||||+||+|.+||. |.++++|.+|+++...|.        ...+|||.
T Consensus        95 ~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~  159 (239)
T d1fxza1          95 SSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGN  159 (239)
T ss_dssp             ------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSS
T ss_pred             ccccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCC
Confidence                   12234699999999999999998 888899999998754442        24588987

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=2.7e-12  Score=107.31  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=69.2

Q ss_pred             ccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCccccccccee
Q 046186           60 EQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKI  138 (436)
Q Consensus        60 p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~  138 (436)
                      +.+......+.+++++||+-..+|+|+ .+|++||++|    ++.+.+                            ..+.
T Consensus        32 ~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G----~~~~~~----------------------------~~~~   79 (115)
T d1o4ta_          32 EAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLG----EGVFHD----------------------------NGKD   79 (115)
T ss_dssp             TTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEES----EEEEEE----------------------------TTEE
T ss_pred             cccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEEC----cceEEE----------------------------cCee
Confidence            445556677889999999999999998 6899999999    998864                            1246


Q ss_pred             eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          139 RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       139 ~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      ..+++||++++|+|.+|++.|.|+++++++++.
T Consensus        80 ~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~l~I~  112 (115)
T d1o4ta_          80 VPIKAGDVCFTDSGESHSIENTGNTDLEFLAVI  112 (115)
T ss_dssp             EEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             EEeeccEEEEECCCCeEEEEECCCCCEEEEEEE
Confidence            899999999999999999999999999988864

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.32  E-value=4.8e-12  Score=104.99  Aligned_cols=78  Identities=17%  Similarity=0.170  Sum_probs=68.5

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..++.+.++++.||....+|+|+.++++||++|    ++.+.+-                           .+....|++
T Consensus        23 ~~~~~v~~~~l~pG~~~p~H~H~~~e~~~Vl~G----~~~~~v~---------------------------~~e~~~v~~   71 (108)
T d2b8ma1          23 TEHVQINHIVLPRGEQMPKHYSNSYVHLIIIKG----EMTLTLE---------------------------DQEPHNYKE   71 (108)
T ss_dssp             CSSCEEEEEEEETTCBCCCEECSSCEEEEEEES----EEEEEET---------------------------TSCCEEEET
T ss_pred             CCCEEEEEEEECCCCcChhhcccccEEEEEEee----eEEEEEe---------------------------cccEEEeec
Confidence            346889999999999999999999999999999    9999751                           122468999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      ||++++|+|.+|++.|.++++|+++++..
T Consensus        72 Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~  100 (108)
T d2b8ma1          72 GNIVYVPFNVKMLIQNINSDILEFFVVKA  100 (108)
T ss_dssp             TCEEEECTTCEEEEECCSSSEEEEEEEEC
T ss_pred             ceEeeccCCceEEEEcCCCCcEEEEEEEC
Confidence            99999999999999999999999998654

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=7.4e-12  Score=104.38  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=68.6

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .++.+..++|.||+...+|+|+..+++||++|    ++.+.+                            ..+.+.|++|
T Consensus        34 ~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G----~~~~~~----------------------------~~~~~~l~~G   81 (114)
T d1vj2a_          34 PNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKG----KLTVLK----------------------------EQGEETVEEG   81 (114)
T ss_dssp             SSEEEEEEEEEEEEEEEEECCSSCEEEEEEES----EEEEEC----------------------------SSCEEEEETT
T ss_pred             CceEEEEEEECCCCCCCceECCCcEEEEEEEc----eeEEEE----------------------------eeeeeEEecC
Confidence            35788899999999999999999999999999    998874                            1246899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      |++++|+|.+|++.|.++++++++|++.
T Consensus        82 d~~~ip~~~~H~~~n~~~~~~~~l~iip  109 (114)
T d1vj2a_          82 FYIFVEPNEIHGFRNDTDSEVEFLCLIP  109 (114)
T ss_dssp             EEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             eEEEEcCCCeEEEEeCCCCCEEEEEEEC
Confidence            9999999999999999999999999875

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.24  E-value=2e-11  Score=99.35  Aligned_cols=78  Identities=17%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             cccceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           63 QCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        63 ~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      ..-++.+..+++.||+...+|+|+ ..+++||++|    ++.+.+                            ..+...|
T Consensus        24 ~~~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G----~~~~~~----------------------------~~~~~~l   71 (105)
T d1v70a_          24 QSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEG----EVVVRV----------------------------GEEEALL   71 (105)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSSCEEEEEEEES----CEEEEE----------------------------TTEEEEE
T ss_pred             ECCCEEEEEEEECCCCCCcceECCCCeEEEEEEee----EEEEEE----------------------------eeeEEEe
Confidence            344688899999999999999998 6799999999    888874                            1246899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      ++||++.+|+|..|++.|.|+++++++.++.
T Consensus        72 ~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~  102 (105)
T d1v70a_          72 APGMAAFAPAGAPHGVRNESASPALLLVVTA  102 (105)
T ss_dssp             CTTCEEEECTTSCEEEECCSSSCEEEEEEEE
T ss_pred             cceEEEEeCCCCEEEeEECCCCCEEEEEEEC
Confidence            9999999999999999999999999998765

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.19  E-value=6.2e-11  Score=104.79  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=70.5

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ..+.+.+.+|.||+...+|+|+..|++||++|    ++.+.+-....                  + .....+.+.|++|
T Consensus        39 ~~i~v~~~~l~PG~~~~~H~H~~~e~~~Vl~G----~g~~~i~~~~~------------------~-~~~~~~~~~l~~G   95 (160)
T d1lr5a_          39 KEVEVWLQTISPGQRTPIHRHSCEEVFTVLKG----KGTLLMGSSSL------------------K-YPGQPQEIPFFQN   95 (160)
T ss_dssp             SSEEEEEEEECTTCBCCEEEESSCEEEEEEEC----CEEEEECCSSS------------------S-SCCSCEEEEECTT
T ss_pred             cEEEEEEEEECCCccccceeccccEEEEEEee----eEEEEECCccc------------------c-ccccceEEEecCC
Confidence            35899999999999999999999999999999    99987632110                  0 0012346899999


Q ss_pred             cEEEeCCCCeEEEeccCC-CcEEEEEEEec
Q 046186          145 DIFALPAGVAHWCYNEGS-TPVVAVVLLDV  173 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~-e~l~~v~~~d~  173 (436)
                      |+++||+|++|.+.|.|+ ++++++++++.
T Consensus        96 d~~~iP~~~~H~~~N~g~~E~l~~l~i~~~  125 (160)
T d1lr5a_          96 TTFSIPVNDPHQVWNSDEHEDLQVLVIISR  125 (160)
T ss_dssp             EEEEECTTCCEEEECCCSSSCEEEEEEEES
T ss_pred             CEEEeCCCCcEEEEECCCCCCEEEEEEECC
Confidence            999999999999999986 89999988763

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.17  E-value=4.6e-11  Score=97.22  Aligned_cols=76  Identities=11%  Similarity=0.080  Sum_probs=65.1

Q ss_pred             cccceEEEEEEecCCcee--cCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeee
Q 046186           63 QCAGVAVVRHTIRQKGLL--LPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRR  140 (436)
Q Consensus        63 ~~~gv~~~r~~i~pg~l~--~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~  140 (436)
                      ...++.+.+++|.||+-.  .+|+|.+.|++||++|    ++.+.+                            ..+.+.
T Consensus        18 ~~~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G----~~~~~~----------------------------~~~~~~   65 (99)
T d1y9qa2          18 ADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEG----IMKVFF----------------------------DEQWHE   65 (99)
T ss_dssp             TTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEES----CEEEEE----------------------------TTEEEE
T ss_pred             CcCCEEEEEEEEeCCcEeccccccCCcEEEEEEEcC----ceEEEe----------------------------cceEEE
Confidence            345799999999999854  6788889999999999    999875                            135789


Q ss_pred             eccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          141 FRQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       141 l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                      |++||.+.||++.+|++.|.|++++.++.+
T Consensus        66 l~~GD~~~~~~~~~H~~~n~~~~~~~~~vi   95 (99)
T d1y9qa2          66 LQQGEHIRFFSDQPHGYAAVTEKAVFQNIV   95 (99)
T ss_dssp             ECTTCEEEEECSSSEEEEESSSCEEEEEEE
T ss_pred             ecCCCEEEECCCCeEEEEeCCccCEEEEEE
Confidence            999999999999999999999998755544

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=1e-10  Score=100.85  Aligned_cols=78  Identities=15%  Similarity=0.259  Sum_probs=68.9

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ..+.+..+++.||+-..+|+|+..+++||++|    ++.+.+-  |                         .....+++|
T Consensus        33 ~~~~~~~vtf~PG~~~~~H~H~~~q~~~Vl~G----~~~~~~~--g-------------------------~~~~~~~~G   81 (134)
T d2f4pa1          33 FNTQVYDVVFEPGARTHWHSHPGGQILIVTRG----KGFYQER--G-------------------------KPARILKKG   81 (134)
T ss_dssp             SSCEEEEEEECTTCEECSEECTTCEEEEEEEE----EEEEEET--T-------------------------SCCEEEETT
T ss_pred             ceeEEEEEEECCCCcCccccCCCCEEEEEEeC----EEEEEEC--C-------------------------cceEEEcCC
Confidence            46899999999999999999999999999999    9988751  1                         235799999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      |++++|+|+.||..|.+++++..|++...
T Consensus        82 d~v~ippg~~H~~~a~~~~~~~~lai~~~  110 (134)
T d2f4pa1          82 DVVEIPPNVVHWHGAAPDEELVHIGISTQ  110 (134)
T ss_dssp             CEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred             CeEEECCCCceECccCCCCcEEEEEEEec
Confidence            99999999999999999999999987653

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.4e-10  Score=96.66  Aligned_cols=74  Identities=14%  Similarity=0.171  Sum_probs=64.4

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ...+..+.|.||+-.++|||++..|+.||++|++.+.+-   |+.   ..+++||+++||+|-+|.. |+|+++++|+++
T Consensus        38 ~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~l~I  111 (115)
T d1o4ta_          38 ARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN---GKD---VPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  111 (115)
T ss_dssp             EEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET---TEE---EEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             cEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEEc---Cee---EEeeccEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            456778899999999999999999999999999998752   332   4599999999999999997 889999999986


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      .
T Consensus       112 ~  112 (115)
T d1o4ta_         112 I  112 (115)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.10  E-value=2.1e-10  Score=101.28  Aligned_cols=101  Identities=7%  Similarity=0.005  Sum_probs=81.7

Q ss_pred             ccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC---eEEEEEecCcc
Q 046186          311 YTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR---SVYDGEVRRGQ  387 (436)
Q Consensus       311 ~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~---~~~~~~l~~Gd  387 (436)
                      +...|....++.+.....++  .|.+.+..|.||+-..+|+|+ +.|+.||++|++.+.+-+....   ......|++||
T Consensus        20 ~g~~g~~~~~~~~~~~~g~~--~i~v~~~~l~PG~~~~~H~H~-~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd   96 (160)
T d1lr5a_          20 YGIEGLSHITVAGALNHGMK--EVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNT   96 (160)
T ss_dssp             TTCTTEEEEEEECHHHHCCS--SEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTE
T ss_pred             cCCCCceEEEeecccCCCcc--EEEEEEEEECCCccccceecc-ccEEEEEEeeeEEEEECCccccccccceEEEecCCC
Confidence            44566666777777777777  789999999999999999995 6899999999999998764322   11334599999


Q ss_pred             EEEEcCCCEEEE-EeCC-CcEEEEEEEec
Q 046186          388 IMVVPQNFAVVK-RAGG-AEFEWISFKTN  414 (436)
Q Consensus       388 v~vVP~g~~h~~-~ag~-e~~~~l~f~~s  414 (436)
                      +++||+|.+|.. |.|+ |++.++.+.+.
T Consensus        97 ~~~iP~~~~H~~~N~g~~E~l~~l~i~~~  125 (160)
T d1lr5a_          97 TFSIPVNDPHQVWNSDEHEDLQVLVIISR  125 (160)
T ss_dssp             EEEECTTCCEEEECCCSSSCEEEEEEEES
T ss_pred             EEEeCCCCcEEEEECCCCCCEEEEEEECC
Confidence            999999999988 7885 89999988753

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=5.2e-10  Score=90.73  Aligned_cols=75  Identities=12%  Similarity=0.102  Sum_probs=66.2

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+..+.+.||+-..+|+|+.+.|+.||++|++.+.+   +|+   ...|++||+++||+|.+|.. |.|++++.++.+
T Consensus        27 ~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v  100 (105)
T d1v70a_          27 RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE---EALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE---EEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---eee---EEEecceEEEEeCCCCEEEeEECCCCCEEEEEE
Confidence            67888999999999999999999999999999999985   223   34599999999999999987 788899999988


Q ss_pred             Ee
Q 046186          412 KT  413 (436)
Q Consensus       412 ~~  413 (436)
                      +.
T Consensus       101 ~~  102 (105)
T d1v70a_         101 TA  102 (105)
T ss_dssp             EE
T ss_pred             EC
Confidence            74

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.02  E-value=7.2e-10  Score=91.55  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=66.2

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++++.++.|.||.-..+|+|+ ..++.||++|++.+++-+   ...+  +|++||+++||+|-+|.. |.+++.|+|+++
T Consensus        25 ~~~v~~~~l~pG~~~p~H~H~-~~e~~~Vl~G~~~~~v~~---~e~~--~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v   98 (108)
T d2b8ma1          25 HVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTLED---QEPH--NYKEGNIVYVPFNVKMLIQNINSDILEFFVV   98 (108)
T ss_dssp             SCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEETT---SCCE--EEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             CEEEEEEEECCCCcChhhccc-ccEEEEEEeeeEEEEEec---ccEE--EeecceEeeccCCceEEEEcCCCCcEEEEEE
Confidence            678899999999999999996 679999999999998743   2223  489999999999999988 778899999998


Q ss_pred             EecCCC
Q 046186          412 KTNDNA  417 (436)
Q Consensus       412 ~~s~~p  417 (436)
                      . +..|
T Consensus        99 ~-~P~p  103 (108)
T d2b8ma1          99 K-APHP  103 (108)
T ss_dssp             E-CSCG
T ss_pred             E-CCCC
Confidence            6 4444

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=2.4e-09  Score=97.14  Aligned_cols=85  Identities=14%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             ccceEEEEEEecCCcee------cCeeec---CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccc
Q 046186           64 CAGVAVVRHTIRQKGLL------LPQFSN---SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDS  134 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~------~Ph~h~---a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~  134 (436)
                      .-++.+...+|.||.+.      ..|||.   .+|+.||++|    +|.+.+-.+.                       .
T Consensus        64 ~~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G----~g~~~l~~~~-----------------------~  116 (190)
T d1x82a_          64 EGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKG----KGGMLLQTPE-----------------------G  116 (190)
T ss_dssp             TTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEES----CEEEEEECTT-----------------------C
T ss_pred             CCCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEe----EEEEEEeecc-----------------------C
Confidence            34688899999999743      458985   5799999999    9999875432                       1


Q ss_pred             cceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          135 HQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       135 ~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                      ..++..+++||+++||+|+.|.+.|+|+++|++++++....
T Consensus       117 ~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde~L~~l~v~~~~~  157 (190)
T d1x82a_         117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPADA  157 (190)
T ss_dssp             CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETTC
T ss_pred             ceEEEEecCCcEEEEecceeEEeEECCCCCEEEEEEECCCc
Confidence            23468999999999999999999999999999999987544

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.96  E-value=8.9e-10  Score=105.46  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=70.2

Q ss_pred             cceEEEEEEecCCcee-cCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           65 AGVAVVRHTIRQKGLL-LPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~-~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      .++.+..++++||+-. .+|+|...+++||++|    +|.+.+                            ..+.+.+++
T Consensus       187 ~d~~~~i~~~~PG~~~~~~h~H~~ee~~~vl~G----~~~~~~----------------------------~~~~~~v~~  234 (273)
T d1sq4a_         187 HDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEG----KAVYRL----------------------------NQDWVEVEA  234 (273)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCSEEEEEEEEEC----EEEEEE----------------------------TTEEEEEET
T ss_pred             cceEEEEEEEccCCccccccccccceEEEEEcc----EEEEEE----------------------------CCEEEEecC
Confidence            4688999999999865 4799999999999999    998875                            134789999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEEEEEecCCC
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAVVLLDVANN  176 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n~  176 (436)
                      ||++++|++++||++|.|+++++.+.+.|.+-.
T Consensus       235 GD~i~~~~~~ph~~~n~g~~p~~yl~~kd~nR~  267 (273)
T d1sq4a_         235 GDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRH  267 (273)
T ss_dssp             TCEEEEEESCCEEEECCSSSCEEEEEEEECSSC
T ss_pred             CCEEEECCCCCEEeEeCCCCCEEEEEEEEcCcC
Confidence            999999999999999999999999988886543

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.6e-09  Score=89.87  Aligned_cols=76  Identities=12%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      ++.+..+.|.||+...+|+|+. .|+.||++|++.+.+   +++ .  ..|++||.++||+|.+|.. |.++++++||++
T Consensus        35 ~~~~~~~~i~pG~~~~~H~H~~-~e~~~vl~G~~~~~~---~~~-~--~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~i  107 (114)
T d1vj2a_          35 NFVMRLFTVEPGGLIDRHSHPW-EHEIFVLKGKLTVLK---EQG-E--ETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL  107 (114)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSS-CEEEEEEESEEEEEC---SSC-E--EEEETTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCCCCceECCC-cEEEEEEEceeEEEE---eee-e--eEEecCeEEEEcCCCeEEEEeCCCCCEEEEEE
Confidence            5778899999999999999975 689999999999885   223 2  4499999999999999988 778899999999


Q ss_pred             EecC
Q 046186          412 KTND  415 (436)
Q Consensus       412 ~~s~  415 (436)
                      ..+.
T Consensus       108 ip~~  111 (114)
T d1vj2a_         108 IPKE  111 (114)
T ss_dssp             EEGG
T ss_pred             ECCC
Confidence            8553

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.95  E-value=3.2e-09  Score=96.28  Aligned_cols=83  Identities=16%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             cceEEEEEecCCc------eecccccCC--CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCC
Q 046186          333 QLSAERGLLHRNA------MMVPHWNLN--AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGG  403 (436)
Q Consensus       333 ~ls~~~v~L~~ga------m~~PHwh~~--A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~  403 (436)
                      ++.+....|.||.      |...|||+.  ..|+.||++|+|.+.+-+.++.. ....+.+||+++||.|++|.+ |.|+
T Consensus        66 ~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~-~~~~v~~Gd~v~iP~g~~H~~~N~Gd  144 (190)
T d1x82a_          66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDA-KWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCE-EEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCce-EEEEecCCcEEEEecceeEEeEECCC
Confidence            6778888999997      445699985  46999999999999999887654 234599999999999999987 9999


Q ss_pred             CcEEEEEEEecCC
Q 046186          404 AEFEWISFKTNDN  416 (436)
Q Consensus       404 e~~~~l~f~~s~~  416 (436)
                      ++|.++++...+-
T Consensus       145 e~L~~l~v~~~~~  157 (190)
T d1x82a_         145 EPFIFLAIYPADA  157 (190)
T ss_dssp             SCEEEEEEEETTC
T ss_pred             CCEEEEEEECCCc
Confidence            9999999987653

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.95  E-value=3.2e-09  Score=99.73  Aligned_cols=93  Identities=13%  Similarity=0.091  Sum_probs=74.7

Q ss_pred             CCcEEEEeCCCCccccccceEEEEEEecCCceecCee-ecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCcc
Q 046186           48 EAGVVETWDPGHEQFQCAGVAVVRHTIRQKGLLLPQF-SNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGES  126 (436)
Q Consensus        48 e~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~l~~Ph~-h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~  126 (436)
                      +++..+..++..   ....+.+..++++||+....|. |...+++||++|    +|.+.+                    
T Consensus       149 ~~~~~r~l~p~~---~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G----~~~~~i--------------------  201 (245)
T d1sfna_         149 DHLIARKLLPDE---PAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEG----EGLYKL--------------------  201 (245)
T ss_dssp             TTEEEEECSCCC---TTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEEC----EEEEEE--------------------
T ss_pred             cceEEEecCCcc---cccceEEEEEEEccCceeeceecCCceEEEEEeCC----EEEEEE--------------------
Confidence            344444444332   2346889999999999888765 679999999999    999875                    


Q ss_pred             CCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEecCC
Q 046186          127 AGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLDVAN  175 (436)
Q Consensus       127 ~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d~~n  175 (436)
                              ..+.+.|++||++++|++++||++|.|++++.++..-|.+.
T Consensus       202 --------~~~~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l~~k~~~~  242 (245)
T d1sfna_         202 --------EENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMNR  242 (245)
T ss_dssp             --------TTEEEEEETTCEEEECTTCCEEEEEESSSCEEEEEEEECSS
T ss_pred             --------CCEEEEecCCCEEEECCCCCEeeEeCCCCCEEEEEEecCCC
Confidence                    13478999999999999999999999999999998777654

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.92  E-value=2.2e-09  Score=88.84  Aligned_cols=73  Identities=18%  Similarity=0.236  Sum_probs=62.2

Q ss_pred             ccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           64 CAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..++.+..+.+.||.-..+|+|+.++++||++|    ++.+.+                            ..+...|++
T Consensus        34 ~~~~~i~~~~~~~G~~~~~H~h~~~~~~~vl~G----~~~~~~----------------------------~~~~~~l~~   81 (112)
T d1yhfa1          34 RQDLGITVFSLDKGQEIGRHSSPGDAMVTILSG----LAEITI----------------------------DQETYRVAE   81 (112)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSEEEEEEEES----EEEEEE----------------------------TTEEEEEET
T ss_pred             CCCcEEEEEEECCCCCcceEECCCCEEEEEEeC----EEEEEE----------------------------ccEEEEecC
Confidence            446788889999999999999999999999999    999875                            124689999


Q ss_pred             CcEEEeCCCCeEEEeccCCCcEEEE
Q 046186          144 GDIFALPAGVAHWCYNEGSTPVVAV  168 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~e~l~~v  168 (436)
                      ||++++|+|.+|.+.|.++..+.++
T Consensus        82 Gd~~~ip~~~~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          82 GQTIVMPAGIPHALYAVEAFQMLLV  106 (112)
T ss_dssp             TCEEEECTTSCEEEEESSCEEEEEE
T ss_pred             CEEEEcCCCCeEEeEECCCcEEEEE
Confidence            9999999999999999866544443

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.6e-08  Score=95.04  Aligned_cols=78  Identities=13%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             cceEEEEEEecCCceec-CeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           65 AGVAVVRHTIRQKGLLL-PQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~-Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      .++.+..++++||+... +|+|...|++||++|    +|.+.+                            ..+.+.+++
T Consensus       169 ~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G----~g~~~i----------------------------~~~~~~~~~  216 (253)
T d1rc6a_         169 FDMNMHILSFAPGASHGYIETHVQEHGAYILSG----QGVYNL----------------------------DNNWIPVKK  216 (253)
T ss_dssp             CSEEEEEEEECTTCCBEEEEEESSCEEEEEEES----EEEEES----------------------------SSCEEEEET
T ss_pred             ccEEEEEEEECCCceEeEEEeCCceEEEEEeCC----EEEEEE----------------------------CCEEEEecC
Confidence            47899999999998654 788889999999999    999874                            134689999


Q ss_pred             CcEEEeCCCCeEEEeccCC-CcEEEEEEEecC
Q 046186          144 GDIFALPAGVAHWCYNEGS-TPVVAVVLLDVA  174 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g~-e~l~~v~~~d~~  174 (436)
                      ||++++|+|++||++|.|. +.++++..-|.+
T Consensus       217 GD~i~~~~~~ph~~~~~g~~~~~~~~~~~~~~  248 (253)
T d1rc6a_         217 GDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCN  248 (253)
T ss_dssp             TCEEEECSSEEEEEEEC----CEEEEEEEECS
T ss_pred             CCEEEECCCCCEeeeeCCCCCcEEEEEEECCC
Confidence            9999999999999999996 445555545544

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.80  E-value=1.6e-08  Score=95.05  Aligned_cols=78  Identities=14%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             cceEEEEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeecc
Q 046186           65 AGVAVVRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ  143 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~  143 (436)
                      ..+.+..++++||+.... |.|...+++||++|    +|.+.+                            ..+.+.+++
T Consensus       166 ~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G----~~~~~~----------------------------~~~~~~~~~  213 (250)
T d1sefa_         166 FDMNMHILSFEPGASHAYIETHVQEHGAYLISG----QGMYNL----------------------------DNEWYPVEK  213 (250)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCSCCEEEEEEEC----EEEEEE----------------------------TTEEEEEET
T ss_pred             ccEEEEEEEECCCCccCccCccCceEEEEEeCC----EEEEEE----------------------------CCEEEEecC
Confidence            468999999999998864 66779999999999    998875                            135789999


Q ss_pred             CcEEEeCCCCeEEEeccC-CCcEEEEEEEecC
Q 046186          144 GDIFALPAGVAHWCYNEG-STPVVAVVLLDVA  174 (436)
Q Consensus       144 GDv~~iPaG~~h~~~N~g-~e~l~~v~~~d~~  174 (436)
                      ||++++|++++||++|.| +++++++..-|++
T Consensus       214 GD~i~~~~~~pH~~~n~G~~~~~~~l~~k~~~  245 (250)
T d1sefa_         214 GDYIFMSAYVPQAAYAVGREEPLMYVYSKDAN  245 (250)
T ss_dssp             TCEEEECTTCCEEEEEECSSSCEEEEEEEECS
T ss_pred             CCEEEECCCCCEEeEcCCCCCcEEEEEEecCC
Confidence            999999999999999999 5677776555543

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=3.7e-08  Score=84.45  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=75.8

Q ss_pred             CCcccCCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCcc
Q 046186          308 ADIYTQGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQ  387 (436)
Q Consensus       308 ~d~~~~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gd  387 (436)
                      ++.|.. .-++..+-..+-|..   ++++..+.+.||+-..+|+||. .++.||++|++++++-+   ....  .+++||
T Consensus        13 ~e~FtG-~v~~~~L~~~~~~~~---~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~g---~~~~--~~~~Gd   82 (134)
T d2f4pa1          13 SDFFTG-NVWVKMLVTDENGVF---NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERG---KPAR--ILKKGD   82 (134)
T ss_dssp             TTTEES-CEEEEEEECCTTCSS---SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETT---SCCE--EEETTC
T ss_pred             CcceEe-eEEEeeccCCCCCCc---eeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEECC---cceE--EEcCCC
Confidence            344541 224445544444433   5889999999999999999986 59999999999988733   3223  499999


Q ss_pred             EEEEcCCCEEEEEeC-CCcEEEEEEEecCCC
Q 046186          388 IMVVPQNFAVVKRAG-GAEFEWISFKTNDNA  417 (436)
Q Consensus       388 v~vVP~g~~h~~~ag-~e~~~~l~f~~s~~p  417 (436)
                      +++||.|-+|+..|. ++.+.+|++..+...
T Consensus        83 ~v~ippg~~H~~~a~~~~~~~~lai~~~~~~  113 (134)
T d2f4pa1          83 VVEIPPNVVHWHGAAPDEELVHIGISTQVHL  113 (134)
T ss_dssp             EEEECTTCCEEEEEBTTBCEEEEEEECCGGG
T ss_pred             eEEECCCCceECccCCCCcEEEEEEEecCCC
Confidence            999999999998555 689999999876544

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.74  E-value=3e-08  Score=83.41  Aligned_cols=80  Identities=8%  Similarity=0.001  Sum_probs=63.5

Q ss_pred             ccceEEEEEEecCCceecC---eeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeee
Q 046186           64 CAGVAVVRHTIRQKGLLLP---QFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRR  140 (436)
Q Consensus        64 ~~gv~~~r~~i~pg~l~~P---h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~  140 (436)
                      ...+-..+++|.|++-..+   +.|...|++||++|    +..+.+-..                        .+.+.+.
T Consensus        38 ~~~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G----~~~~~~g~~------------------------~~~~~~~   89 (122)
T d2bnma2          38 APSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEG----EIHMKWGDK------------------------ENPKEAL   89 (122)
T ss_dssp             STTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEES----CEEEEESCT------------------------TSCEEEE
T ss_pred             CCccEeEEEEEeCCCCCccccCCCcccEEEEEEEEE----EEEEEEecc------------------------cCCEEEE
Confidence            3468888999999986443   33679999999999    888765211                        1245789


Q ss_pred             eccCcEEEeCCCCeEEEecc-CCCcEEEEEEE
Q 046186          141 FRQGDIFALPAGVAHWCYNE-GSTPVVAVVLL  171 (436)
Q Consensus       141 l~~GDv~~iPaG~~h~~~N~-g~e~l~~v~~~  171 (436)
                      |++||+++||++++|.+.|. |++++.++++.
T Consensus        90 l~~GDsi~~~~~~pH~~~n~~g~~~a~~l~Vt  121 (122)
T d2bnma2          90 LPTGASMFVEEHVPHAFTAAKGTGSAKLIAVN  121 (122)
T ss_dssp             ECTTCEEEECTTCCEEEEESTTSCCEEEEEEE
T ss_pred             EccCcEEEeCCCCCEEEEcCCCCccEEEEEEE
Confidence            99999999999999999996 78888888763

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.70  E-value=3.6e-08  Score=79.58  Aligned_cols=79  Identities=11%  Similarity=-0.024  Sum_probs=60.8

Q ss_pred             CCccccccceEEEEEecCCceec--ccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeC
Q 046186          326 LPVLRWIQLSAERGLLHRNAMMV--PHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAG  402 (436)
Q Consensus       326 ~P~L~~l~ls~~~v~L~~gam~~--PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag  402 (436)
                      +|.....++.+..+.|.||+-..  +|+| .+.|++||++|++.+.+    |..  ..+|++||.++||.+.+|.. |.|
T Consensus        14 ~p~~~~~~~e~~~~~l~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~----~~~--~~~l~~GD~~~~~~~~~H~~~n~~   86 (99)
T d1y9qa2          14 FPYAADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF----DEQ--WHELQQGEHIRFFSDQPHGYAAVT   86 (99)
T ss_dssp             EEEETTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE----TTE--EEEECTTCEEEEECSSSEEEEESS
T ss_pred             ecCCCcCCEEEEEEEEeCCcEeccccccC-CcEEEEEEEcCceEEEe----cce--EEEecCCCEEEECCCCeEEEEeCC
Confidence            34444558999999999999764  4554 56799999999999987    233  34499999999999999988 777


Q ss_pred             CCcEEEEEE
Q 046186          403 GAEFEWISF  411 (436)
Q Consensus       403 ~e~~~~l~f  411 (436)
                      ++.+.++.+
T Consensus        87 ~~~~~~~vi   95 (99)
T d1y9qa2          87 EKAVFQNIV   95 (99)
T ss_dssp             SCEEEEEEE
T ss_pred             ccCEEEEEE
Confidence            777644333

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1.9e-08  Score=97.15  Aligned_cols=75  Identities=16%  Similarity=0.239  Sum_probs=66.6

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      +|.+....|.||+...+|+|+ +.|+.||++|++.+++++.  ++   ..+.+||++++|.|.+|.. |.|++.+.|+.+
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H~-~~e~~~vl~G~g~~t~~~~--~~---~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~  126 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVDG--ER---TPMNEGDFILTPQWRWHDHGNPGDEPVIWLDG  126 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEETT--EE---EECCTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             cceeeeEEECCCCccccccCc-hhheEEEEEeeEEEEEecC--EE---EEecCCCEEEeCCCceEEeEECCCCCEEEEEE
Confidence            688899999999999999995 5799999999999998873  32   3499999999999999987 889999999998


Q ss_pred             Ee
Q 046186          412 KT  413 (436)
Q Consensus       412 ~~  413 (436)
                      ++
T Consensus       127 ~d  128 (308)
T d2d40a1         127 LD  128 (308)
T ss_dssp             EC
T ss_pred             ec
Confidence            74

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.67  E-value=5e-08  Score=95.73  Aligned_cols=80  Identities=13%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             cceEEEEEecCCce--ecccccCCCcEEEEEEeeeEEEEEEeCCCC-eEEEEEecCccEEEEcCCCEEEE-EeCCCcEEE
Q 046186          333 QLSAERGLLHRNAM--MVPHWNLNAHSIMYAISGSCHVQVVDSYGR-SVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEW  408 (436)
Q Consensus       333 ~ls~~~v~L~~gam--~~PHwh~~A~ei~yV~~G~grv~vv~~~G~-~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~  408 (436)
                      .+++..+.+.||+.  ..||||.+++|+.||++|++++.+.+..+. ..+  .|++||+++||+|.+|.. |.+ ++.++
T Consensus        45 ~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~--~l~~GD~~~~P~g~~H~~~n~~-~~~~~  121 (348)
T d1juha_          45 AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTR--VLSSGDYGSVPRNVTHTFQIQD-PDTEM  121 (348)
T ss_dssp             SCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEE--EEETTCEEEECTTEEEEEEECS-TTEEE
T ss_pred             eEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEE--EeCCCCEEEECCCCeEeeEeCC-CCcEE
Confidence            57888899999985  468999999999999999999999987643 334  499999999999999987 555 56888


Q ss_pred             EEEEecC
Q 046186          409 ISFKTND  415 (436)
Q Consensus       409 l~f~~s~  415 (436)
                      +.+++..
T Consensus       122 l~v~~pg  128 (348)
T d1juha_         122 TGVIVPG  128 (348)
T ss_dssp             EEEEESS
T ss_pred             EEEECCC
Confidence            8877553

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.64  E-value=8.8e-08  Score=94.53  Aligned_cols=89  Identities=12%  Similarity=0.103  Sum_probs=70.9

Q ss_pred             CCcEEEEeCCCC--ccccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCc
Q 046186           48 EAGVVETWDPGH--EQFQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGE  125 (436)
Q Consensus        48 e~G~~e~~~~~~--p~l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~  125 (436)
                      +++.+++.++..  +...  -+++....|.||....||+|+..+++||++|    +|++.+                   
T Consensus       237 ~g~~l~y~nP~tg~~~~~--ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G----~g~~~i-------------------  291 (355)
T d3bu7a1         237 DGLILRYTNPQTGGHPML--TMGASMQMLRPGEHTKAHRHTGNVIYNVAKG----QGYSIV-------------------  291 (355)
T ss_dssp             TBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCEEESSCEEEEEEEC----CEEEEE-------------------
T ss_pred             CceEEEeccccccCCCcc--eeeEEEEEECCCCccCCcCccCcEEEEEEEC----cEEEEE-------------------
Confidence            466677776432  3333  3677778999999999999999999999999    998875                   


Q ss_pred             cCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCC-cEEEEEE
Q 046186          126 SAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGST-PVVAVVL  170 (436)
Q Consensus       126 ~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e-~l~~v~~  170 (436)
                               ..+...+++||+|+||++..|+..|.+++ .++++.+
T Consensus       292 ---------~g~~~~~~~GDv~~vP~~~~h~~~N~s~~e~~~Lf~~  328 (355)
T d3bu7a1         292 ---------GGKRFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSF  328 (355)
T ss_dssp             ---------TTEEEEECTTCEEEECTTCCEEEEECCSSCCEEEEEE
T ss_pred             ---------CCEEEEeeCCCEEEeCCCCcEEeecCCCCCcEEEEEe
Confidence                     12468999999999999999999999875 4555554

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.61  E-value=6e-08  Score=95.54  Aligned_cols=74  Identities=16%  Similarity=0.250  Sum_probs=66.4

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      +|.+....|.||....||+| ++.++.||++|+|.+++++  |.+ +  .+++||+|++|.+.+|.. |.|++.+.|+.+
T Consensus        86 ~l~~~~~~l~PGe~~~~H~H-~~~~~~~vi~G~g~~t~v~--g~~-~--~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~  159 (351)
T d2phda1          86 TMWAGIQYLGPRETAPEHRH-SQNAFRFVVEGEGVWTVVN--GDP-V--RMSRGDLLLTPGWCFHGHMNDTDQPMAWIDG  159 (351)
T ss_dssp             SCEEEEEEECTTCEEEEEEE-SSCEEEEEEECEEEEEEET--TEE-E--EEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             hhhhheEEECCCCcCCcccc-ccceeEEEEECCcEEEEEC--CEE-E--EEeCCCEEEeCCCceEEEEEcCCCCEEEEEe
Confidence            78888999999999999999 5889999999999999997  444 3  499999999999999987 888999999988


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      +
T Consensus       160 ~  160 (351)
T d2phda1         160 L  160 (351)
T ss_dssp             E
T ss_pred             e
Confidence            7

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.60  E-value=6.9e-08  Score=81.54  Aligned_cols=74  Identities=14%  Similarity=0.038  Sum_probs=59.2

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ..+.+...+++||..  ||.|+..|++||++|    ++.+.+  .                          .+.+.|++|
T Consensus        52 ~~~~~~~~~~~~g~~--~~~~~~~E~~~vl~G----~~~~~~--~--------------------------g~~~~l~~G   97 (128)
T d2pyta1          52 SSMAAGFMQWDNAFF--PWTLNYDEIDMVLEG----ELHVRH--E--------------------------GETMIAKAG   97 (128)
T ss_dssp             CSSEEEEEEEEEEEE--EEECSSEEEEEEEEE----EEEEEE--T--------------------------TEEEEEETT
T ss_pred             CceEEEEEEECCCcc--ceeCCccEEEEEEEe----EEEEEE--C--------------------------CEEEEecCC
Confidence            357778889999874  444569999999999    998874  1                          347899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEecC
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDVA  174 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~~  174 (436)
                      |+++||+|+.|++.|.+  ++++++++...
T Consensus        98 d~~~~p~g~~h~~~~~~--~~~~~~v~~Pa  125 (128)
T d2pyta1          98 DVMFIPKGSSIEFGTPT--SVRFLYVAWPA  125 (128)
T ss_dssp             CEEEECTTCEEEEEEEE--EEEEEEEEEST
T ss_pred             CEEEECCCCEEEEEeCC--CEEEEEEECCC
Confidence            99999999999999974  57777777643

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.58  E-value=9.2e-08  Score=92.84  Aligned_cols=75  Identities=15%  Similarity=0.145  Sum_probs=64.4

Q ss_pred             ceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .+++..+++.||+...||||+ ..|++||++|    ++.+.+ .                           .+...+++|
T Consensus       213 ~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G----~~~~~v-~---------------------------~~~~~~~~G  260 (330)
T d1y3ta1         213 QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEG----QMTMWT-D---------------------------GQEIQLNPG  260 (330)
T ss_dssp             SCEEEEEEECSCCCCCCEECSSCEEEEEEEES----CEEEEE-T---------------------------TEEEEECTT
T ss_pred             cEEEEEEEECCCCccCccCcCCccEEEEEEec----EEEEEE-C---------------------------CEEEEeCCC
Confidence            478888999999999999998 7899999999    998864 1                           236899999


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEEec
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLLDV  173 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~d~  173 (436)
                      |++++|+|++|++.|.++ ++.++.++..
T Consensus       261 d~~~vP~g~~H~~~~~~~-~~~~l~~~~p  288 (330)
T d1y3ta1         261 DFLHVPANTVHSYRLDSH-YTKMVGVLVP  288 (330)
T ss_dssp             CEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             CEEEECcCCcEEeEeCCC-CeEEEEEECC
Confidence            999999999999999764 6888877764

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.58  E-value=2.4e-07  Score=76.14  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=61.2

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      ++.+..+.|.||.-..+|+|+. .++.||++|++.+++   +|+ .  ..|++||+++||+|-+|...|. +++.++++.
T Consensus        36 ~~~i~~~~~~~G~~~~~H~h~~-~~~~~vl~G~~~~~~---~~~-~--~~l~~Gd~~~ip~~~~H~~~a~-~~~~~l~~v  107 (112)
T d1yhfa1          36 DLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITI---DQE-T--YRVAEGQTIVMPAGIPHALYAV-EAFQMLLVV  107 (112)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEE---TTE-E--EEEETTCEEEECTTSCEEEEES-SCEEEEEEE
T ss_pred             CcEEEEEEECCCCCcceEECCC-CEEEEEEeCEEEEEE---ccE-E--EEecCCEEEEcCCCCeEEeEEC-CCcEEEEEE
Confidence            6778889999999999999985 899999999999986   233 2  3599999999999999999775 567777665


Q ss_pred             e
Q 046186          413 T  413 (436)
Q Consensus       413 ~  413 (436)
                      .
T Consensus       108 i  108 (112)
T d1yhfa1         108 V  108 (112)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.35  E-value=1e-06  Score=74.06  Aligned_cols=72  Identities=17%  Similarity=0.315  Sum_probs=57.3

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+++....+.+|+.   |||....|+.||++|++.+++ +  |+. +  .|++||+++||+|..|...+. +++.++.+.
T Consensus        53 ~~~~~~~~~~~g~~---~~~~~~~E~~~vl~G~~~~~~-~--g~~-~--~l~~Gd~~~~p~g~~h~~~~~-~~~~~~~v~  122 (128)
T d2pyta1          53 SMAAGFMQWDNAFF---PWTLNYDEIDMVLEGELHVRH-E--GET-M--IAKAGDVMFIPKGSSIEFGTP-TSVRFLYVA  122 (128)
T ss_dssp             SSEEEEEEEEEEEE---EEECSSEEEEEEEEEEEEEEE-T--TEE-E--EEETTCEEEECTTCEEEEEEE-EEEEEEEEE
T ss_pred             ceEEEEEEECCCcc---ceeCCccEEEEEEEeEEEEEE-C--CEE-E--EecCCCEEEECCCCEEEEEeC-CCEEEEEEE
Confidence            57788888999864   899999999999999999985 3  433 3  499999999999999987443 456666665


Q ss_pred             ec
Q 046186          413 TN  414 (436)
Q Consensus       413 ~s  414 (436)
                      +-
T Consensus       123 ~P  124 (128)
T d2pyta1         123 WP  124 (128)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.11  E-value=7.2e-07  Score=79.58  Aligned_cols=66  Identities=15%  Similarity=0.261  Sum_probs=52.7

Q ss_pred             eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEe
Q 046186           79 LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCY  158 (436)
Q Consensus        79 l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~  158 (436)
                      +...|.|+..|+.||++|    +|.+.+-..                       | ......+++||++.||+|+.||+.
T Consensus        92 F~~EH~H~~dEvr~vv~G----~g~f~v~~~-----------------------d-~~~~v~~~~GDli~vPag~~H~F~  143 (179)
T d1zrra1          92 FLNEHTHGEDEVRFFVEG----AGLFCLHIG-----------------------D-EVFQVLCEKNDLISVPAHTPHWFD  143 (179)
T ss_dssp             HHSCBEESSCEEEEEEES----CCCCCEECS-----------------------S-CEEEEECCCSCEEEECTTCCBCCC
T ss_pred             hcccccCCCceEEEEEeC----eEEEEEEcC-----------------------C-eEEEEEEcCCCEEEeCCCCeEccc
Confidence            456899999999999999    998876421                       1 111357899999999999999998


Q ss_pred             ccCCCcEEEEEEEe
Q 046186          159 NEGSTPVVAVVLLD  172 (436)
Q Consensus       159 N~g~e~l~~v~~~d  172 (436)
                      ...+..+.+|.+|.
T Consensus       144 ~~~~~~~~aiRlF~  157 (179)
T d1zrra1         144 MGSEPNFTAIRIFD  157 (179)
T ss_dssp             CSSCSSCEEEEEEC
T ss_pred             cCCCCCEEEEEEec
Confidence            77777888887775

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.11  E-value=1.1e-05  Score=67.36  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=59.2

Q ss_pred             cceEEEEEecCCceeccccc--CCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-Ee-CCCcEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWN--LNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RA-GGAEFEW  408 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh--~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~a-g~e~~~~  408 (436)
                      .|-..++.|.+++-.++.++  -...|++||++|++.+.+-+.....  ..+|++||.++||.+.+|.. |. |++.+.+
T Consensus        40 ~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~--~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~  117 (122)
T d2bnma2          40 SLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVEEHVPHAFTAAKGTGSAKL  117 (122)
T ss_dssp             TCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEECTTCCEEEEESTTSCCEEE
T ss_pred             ccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCE--EEEEccCcEEEeCCCCCEEEEcCCCCccEEE
Confidence            56777889999988766543  2468999999999999975432122  33599999999999999987 76 5778887


Q ss_pred             EEE
Q 046186          409 ISF  411 (436)
Q Consensus       409 l~f  411 (436)
                      |++
T Consensus       118 l~V  120 (122)
T d2bnma2         118 IAV  120 (122)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=3.2e-05  Score=68.64  Aligned_cols=77  Identities=23%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             EEEEEEecCCce----------ecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccce
Q 046186           68 AVVRHTIRQKGL----------LLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQK  137 (436)
Q Consensus        68 ~~~r~~i~pg~l----------~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k  137 (436)
                      ..-.++|.|..+          ..-|.|+..|+.||+.|    +|.+.+-...                        .+.
T Consensus        63 ~~D~i~l~p~~~pn~~~~~~~F~~EH~H~~~Evr~vl~G----~G~f~v~~~~------------------------~~~  114 (179)
T d1vr3a1          63 WMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEG----SGYFDVRDKE------------------------DKW  114 (179)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEE----EEEEEEECTT------------------------SCE
T ss_pred             ceEEEEECCccCCCHHHHHHHHhhceeCCCcEEEEEEeC----cEEEEEECCC------------------------CcE
Confidence            356677887653          35899999999999999    9999874321                        122


Q ss_pred             e-eeeccCcEEEeCCCCeEEEeccCCCcEEEEEEEe
Q 046186          138 I-RRFRQGDIFALPAGVAHWCYNEGSTPVVAVVLLD  172 (436)
Q Consensus       138 ~-~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~~d  172 (436)
                      + ..+++||+++||+|+.||+.-+.+..+.++-+|.
T Consensus       115 iri~~~~GDli~iPag~~HwFtl~~~~~v~aiRlF~  150 (179)
T d1vr3a1         115 IRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFV  150 (179)
T ss_dssp             EEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEES
T ss_pred             EEEEEeCCCEEEeCCCccEeccCCCCCCEEEEEEEC
Confidence            2 5678999999999999999877677788887775

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=7.2e-05  Score=66.27  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=57.2

Q ss_pred             eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCC-CcEEEEEEEecC
Q 046186          346 MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGG-AEFEWISFKTND  415 (436)
Q Consensus       346 m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~-e~~~~l~f~~s~  415 (436)
                      ...-|.|+. .||.||++|+|.+.+-+.++. .++-.+.+||+++||+|..|+.-.++ ..+..+-+|+++
T Consensus        84 F~~EH~H~~-~Evr~vl~G~G~f~v~~~~~~-~iri~~~~GDli~iPag~~HwFtl~~~~~v~aiRlF~~~  152 (179)
T d1vr3a1          84 FFEEHLHLD-EEIRYILEGSGYFDVRDKEDK-WIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE  152 (179)
T ss_dssp             HHSCEECSS-CEEEEEEEEEEEEEEECTTSC-EEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred             HhhceeCCC-cEEEEEEeCcEEEEEECCCCc-EEEEEEeCCCEEEeCCCccEeccCCCCCCEEEEEEECCC
Confidence            457899975 699999999999999887644 57777999999999999999986664 678888888664

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.72  E-value=0.00021  Score=60.17  Aligned_cols=99  Identities=9%  Similarity=-0.025  Sum_probs=70.3

Q ss_pred             ccCCCeEEEEeCCCCCCccccccceEEE-EEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEE
Q 046186          311 YTQGAGHITTLNSFNLPVLRWIQLSAER-GLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIM  389 (436)
Q Consensus       311 ~~~~~G~~~~~~~~~~P~L~~l~ls~~~-v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~  389 (436)
                      +.-.-|.++.+...+.-..+ .. -+.. ....+|.+|..|+|...+++.+|+.|..++.+.+......+. -.+.++.+
T Consensus        10 ~~D~RG~l~~i~~~~~~~f~-~k-r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~-l~~~~~~l   86 (135)
T d2pa7a1          10 IIDSRGSLVAIEENKNIPFS-IK-RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEIT-LDSPAVGL   86 (135)
T ss_dssp             EEETTEEEEEEETTTTSSSC-CC-EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEE-ECCTTEEE
T ss_pred             eECCCCCEEEEEcccccccc-cc-eEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceee-cccCCcee
Confidence            33456888877665432211 01 1222 345789999999999999999999999999998876554443 24788999


Q ss_pred             EEcCCCEEEEEeCCCcEEEEEEE
Q 046186          390 VVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       390 vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      +||.|++|...+-+++..++.+-
T Consensus        87 ~IPpg~~h~~~~l~~~s~ll~l~  109 (135)
T d2pa7a1          87 YVGPAVWHEMHDFSSDCVMMVLA  109 (135)
T ss_dssp             EECTTCEEEEECCCTTCEEEEEE
T ss_pred             eeCCCEeeeEEecCCCcEEEEEc
Confidence            99999999987666566655543

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.69  E-value=1.2e-05  Score=71.53  Aligned_cols=69  Identities=13%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             eecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeC-CCcEEEEEEEecCCC
Q 046186          346 MMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAG-GAEFEWISFKTNDNA  417 (436)
Q Consensus       346 m~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag-~e~~~~l~f~~s~~p  417 (436)
                      ....|.|+. .|+.||++|+|++.+-+. + .++.-.+++||+++||+|-.|+...+ +..+..+-+|+++.-
T Consensus        92 F~~EH~H~~-dEvr~vv~G~g~f~v~~~-d-~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~~~g  161 (179)
T d1zrra1          92 FLNEHTHGE-DEVRFFVEGAGLFCLHIG-D-EVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPEG  161 (179)
T ss_dssp             HHSCBEESS-CEEEEEEESCCCCCEECS-S-CEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCGGG
T ss_pred             hcccccCCC-ceEEEEEeCeEEEEEEcC-C-eEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecCCCC
Confidence            447899975 799999999999998863 3 45777799999999999999998666 467999999877643

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=97.46  E-value=0.0001  Score=62.82  Aligned_cols=92  Identities=9%  Similarity=-0.096  Sum_probs=66.0

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      |....++++.||+...+|+|+ +.+.+||++|+.+..    .|...--..+.+|+-++.|+|.+|...++.++.+++...
T Consensus        42 g~~~~l~r~~~G~~~p~H~H~-~~e~~~VL~G~l~~~----~g~~~~g~~~~~g~y~~~Pag~~H~~~~~~e~~~~~~~~  116 (144)
T d2o1qa1          42 GSWTAIFDCPAGSSFAAHVHV-GPGEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSF  116 (144)
T ss_dssp             TEEEEEEEECTTEEECCEEES-SCEEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEEEEEEEEEEEE
T ss_pred             CcEEEEEEeCCCcCcCCCccc-cCEEEEEEEEEEEec----CCCcCCCceEeCCceeEcCCCCeEccccCCCCEEEEEEE
Confidence            778889999999999999997 557799999997664    232111124779999999999999866667777776555


Q ss_pred             ecCCCCcccccccccccccc
Q 046186          413 TNDNAMISPLSGRTSVMRGK  432 (436)
Q Consensus       413 ~s~~p~~~~LaG~~sv~~~l  432 (436)
                      ..+   ..+|.-..++++.+
T Consensus       117 ~Gp---~~~ld~dg~~~~~~  133 (144)
T d2o1qa1         117 LGP---LTFVKPDGSPIAVI  133 (144)
T ss_dssp             ESC---EEEECTTSCEEEEE
T ss_pred             ECC---eEEECCCCCEEEEE
Confidence            432   24555555555443

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00022  Score=60.74  Aligned_cols=60  Identities=17%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEE-
Q 046186           79 LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWC-  157 (436)
Q Consensus        79 l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~-  157 (436)
                      +..||-++.-.+.||++|    +|.+.+                            ..+.+.+++||++++|+|.+|.. 
T Consensus        30 ~~Rp~g~~~Y~l~yv~~G----~G~~~i----------------------------~~~~y~l~~Gdl~li~P~~~H~y~   77 (161)
T d2arca_          30 IDRPLGMKGYILNLTIRG----QGVVKN----------------------------QGREFVCRPGDILLFPPGEIHHYG   77 (161)
T ss_dssp             EEETTCCSSEEEEEEEEE----CEEEEE----------------------------TTEEEEECTTCEEEECTTCCEEEE
T ss_pred             EECCCCCCCEEEEEEEEe----EEEEEE----------------------------CCEEEEecCCeEEEEcCCCcEEEE
Confidence            467888888999999999    999874                            24579999999999999999964 


Q ss_pred             eccCCCcEEEEEE
Q 046186          158 YNEGSTPVVAVVL  170 (436)
Q Consensus       158 ~N~g~e~l~~v~~  170 (436)
                      ...++++..++++
T Consensus        78 ~~~~~~~w~~~wl   90 (161)
T d2arca_          78 RHPEAREWYHQWV   90 (161)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             eCCCCCCEEEEEE
Confidence            4555667666554

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=97.26  E-value=0.00042  Score=58.93  Aligned_cols=76  Identities=8%  Similarity=-0.093  Sum_probs=56.2

Q ss_pred             cceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           65 AGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        65 ~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      .|.....+.+.||+...+|+|++.+.+||++|    +-....   |                      + ...-..+.+|
T Consensus        41 tg~~~~l~r~~~G~~~p~H~H~~~e~~~VL~G----~l~~~~---g----------------------~-~~~g~~~~~g   90 (144)
T d2o1qa1          41 MGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKG----KMDVRG---G----------------------K-AAGGDTAIAP   90 (144)
T ss_dssp             TTEEEEEEEECTTEEECCEEESSCEEEEEEEE----EEEETT---C----------------------G-GGTSEEEESS
T ss_pred             CCcEEEEEEeCCCcCcCCCccccCEEEEEEEE----EEEecC---C----------------------C-cCCCceEeCC
Confidence            47888999999999999999999999999999    755431   1                      0 0112478899


Q ss_pred             cEEEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          145 DIFALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       145 Dv~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      +-++.|+|.+|... .++++.+++..+
T Consensus        91 ~y~~~Pag~~H~~~-~~~e~~~~~~~~  116 (144)
T d2o1qa1          91 GYGYESANARHDKT-EFPVASEFYMSF  116 (144)
T ss_dssp             EEEEECTTCEESCC-EEEEEEEEEEEE
T ss_pred             ceeEcCCCCeEccc-cCCCCEEEEEEE
Confidence            99999999999632 234555555433

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.00046  Score=54.12  Aligned_cols=41  Identities=20%  Similarity=0.633  Sum_probs=33.8

Q ss_pred             ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCE
Q 046186          351 WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFA  396 (436)
Q Consensus       351 wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~  396 (436)
                      |+-..+|+.||++|+++++  +.+|+. .  ++.+||+++||+|+-
T Consensus        32 ~~y~~~E~~~ileG~v~i~--~~~G~~-~--~~~aGD~~~~p~G~~   72 (88)
T d1o5ua_          32 WYYDTNETCYILEGKVEVT--TEDGKK-Y--VIEKGDLVTFPKGLR   72 (88)
T ss_dssp             EECSSCEEEEEEEEEEEEE--ETTCCE-E--EEETTCEEEECTTCE
T ss_pred             EEcCccEEEEEEEeEEEEE--cCCCCE-E--EEeCCCEEEECCCCE
Confidence            4445889999999999986  456765 3  389999999999997

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=96.98  E-value=0.0042  Score=51.86  Aligned_cols=97  Identities=13%  Similarity=-0.056  Sum_probs=64.8

Q ss_pred             eeecCCcEEE-EeCCCCccccccceEEEE-EEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCC
Q 046186           44 RVECEAGVVE-TWDPGHEQFQCAGVAVVR-HTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQ  120 (436)
Q Consensus        44 ~~~se~G~~e-~~~~~~p~l~~~gv~~~r-~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~  120 (436)
                      .+.-+-|.+. .+..+.-.+.-.  .+.. ....+|.+...|+|. ..++++|+.|    +..+.+.++.-         
T Consensus         9 ~~~D~RG~l~~i~~~~~~~f~~k--r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G----~i~~~~~d~~~---------   73 (135)
T d2pa7a1           9 KIIDSRGSLVAIEENKNIPFSIK--RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNG----SCRVILDDGNI---------   73 (135)
T ss_dssp             EEEETTEEEEEEETTTTSSSCCC--EEEEEESCCSSCCEEEEEESSCCEEEEEEES----CEEEEEECSSC---------
T ss_pred             ceECCCCCEEEEEcccccccccc--eEEEEecCCCCcEEeeeccccccEEEEeccc----EEEEEEEeccc---------
Confidence            3566778764 444333223222  2222 346788899999998 9999999999    88887765421         


Q ss_pred             CCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEEE
Q 046186          121 GGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVVL  170 (436)
Q Consensus       121 ~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~~  170 (436)
                                    .....-.+.++.+.||+|++|-+.+.+++ .+++.+
T Consensus        74 --------------~~~~~l~~~~~~l~IPpg~~h~~~~l~~~-s~ll~l  108 (135)
T d2pa7a1          74 --------------IQEITLDSPAVGLYVGPAVWHEMHDFSSD-CVMMVL  108 (135)
T ss_dssp             --------------EEEEEECCTTEEEEECTTCEEEEECCCTT-CEEEEE
T ss_pred             --------------cceeecccCCceeeeCCCEeeeEEecCCC-cEEEEE
Confidence                          01123347889999999999999998765 444443

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.25  Score=43.90  Aligned_cols=97  Identities=18%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             ceeecCCcEEEEeCC------CCccccccc--eEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCC
Q 046186           43 NRVECEAGVVETWDP------GHEQFQCAG--VAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPE  113 (436)
Q Consensus        43 ~~~~se~G~~e~~~~------~~p~l~~~g--v~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~e  113 (436)
                      .|-.++.|.+..+..      .+|....-|  ..+..-++.||+=+.||-|. -+-+.||++|    +....        
T Consensus         9 ~rg~~~~~wl~s~~~Fsf~~y~dp~~~~fg~l~v~ndd~~~pg~gf~~HpH~g~eivT~vl~G----~~~H~--------   76 (231)
T d1tq5a1           9 ERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEG----TVEHQ--------   76 (231)
T ss_dssp             GSEEEECSSEEEEESSCBTTBCCSSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEES----EEEEE--------
T ss_pred             HCCCCCCCCCcceEeeecCCccCccccCCCceEEEecceecCCCCCCCCCcCCeeEEEEEEeE----EEEEC--------
Confidence            345556666655432      123322222  34567899999999999998 7888999999    76654        


Q ss_pred             cccCCCCCCCCccCCcccccccceeeeeccCcEEEeCC--CCeEEEeccC-CCcEEEEEE
Q 046186          114 TYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPA--GVAHWCYNEG-STPVVAVVL  170 (436)
Q Consensus       114 t~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPa--G~~h~~~N~g-~e~l~~v~~  170 (436)
                                         |+-.....+++|||-..-|  |+.|.-.|.. ++++.++-+
T Consensus        77 -------------------DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQi  117 (231)
T d1tq5a1          77 -------------------DSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQI  117 (231)
T ss_dssp             -------------------ESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEE
T ss_pred             -------------------CCCCCcEEECCCcEEEEecCCcEEEEeeccccCCCeEEEEE
Confidence                               2223357899999999988  5788888854 445666544

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.49  E-value=0.011  Score=51.89  Aligned_cols=73  Identities=18%  Similarity=0.144  Sum_probs=56.8

Q ss_pred             cCCceecccccC--CC-cEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNL--NA-HSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~--~A-~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|.  ++ +++++|++|....-+||....     +.....|.+  +..++||.|++|-..+.+++..++-+
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y~  134 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEEe
Confidence            699999999974  33 699999999999999997532     245556765  45999999999998887766666555


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      -++
T Consensus       135 ~~~  137 (183)
T d1dzra_         135 ATN  137 (183)
T ss_dssp             ESS
T ss_pred             CCc
Confidence            444

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=96.49  E-value=0.021  Score=56.61  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             ceEEEEEecCCceeccc-ccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEe
Q 046186          334 LSAERGLLHRNAMMVPH-WNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRA  401 (436)
Q Consensus       334 ls~~~v~L~~gam~~PH-wh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~a  401 (436)
                      .++.++.+.++.-...- ...+..+|+.|++|++++..-+.++.   ...|++||+|+||++....+.+
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~~~~~~---~~~l~~G~~~fIpa~~~~~i~~  422 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDST---KQKIDTGYVFFVAPGSSIELTA  422 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETTCGGG---CEEEETTCEEEECTTCCEEEEE
T ss_pred             eEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEecCCCcc---EEEeCCceEEEEcCCceEEEEe
Confidence            44555666554321111 12245699999999999875332222   2359999999999998766533

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.44  E-value=0.0053  Score=54.04  Aligned_cols=74  Identities=16%  Similarity=0.033  Sum_probs=56.8

Q ss_pred             cCCceecccccCC--CcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          342 HRNAMMVPHWNLN--AHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       342 ~~gam~~PHwh~~--A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+|-+|..|+|..  -+++++|++|+...-+||..-.     +.....|.+  +..++||.|++|--.+-+++..++-+.
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~  133 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKC  133 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCceEEEEec
Confidence            6899999998743  3689999999999999997632     234445655  669999999999988877766666555


Q ss_pred             ecC
Q 046186          413 TND  415 (436)
Q Consensus       413 ~s~  415 (436)
                      ++.
T Consensus       134 s~~  136 (183)
T d1ep0a_         134 TEL  136 (183)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            443

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.0028  Score=49.42  Aligned_cols=52  Identities=17%  Similarity=0.288  Sum_probs=37.3

Q ss_pred             ecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCC
Q 046186           74 IRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGV  153 (436)
Q Consensus        74 i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~  153 (436)
                      -.||.+. -+ .+.+|++||++|    +.++..  .+                         ....++++||++++|+|.
T Consensus        25 ~~pg~f~-~~-y~~~E~~~ileG----~v~i~~--~~-------------------------G~~~~~~aGD~~~~p~G~   71 (88)
T d1o5ua_          25 KEVSEFD-WY-YDTNETCYILEG----KVEVTT--ED-------------------------GKKYVIEKGDLVTFPKGL   71 (88)
T ss_dssp             ECSEEEE-EE-CSSCEEEEEEEE----EEEEEE--TT-------------------------CCEEEEETTCEEEECTTC
T ss_pred             ecCcEEE-EE-cCccEEEEEEEe----EEEEEc--CC-------------------------CCEEEEeCCCEEEECCCC
Confidence            3565542 23 368999999999    888853  21                         234689999999999999


Q ss_pred             e-EEEe
Q 046186          154 A-HWCY  158 (436)
Q Consensus       154 ~-h~~~  158 (436)
                      . +|-.
T Consensus        72 ~~~W~v   77 (88)
T d1o5ua_          72 RCRWKV   77 (88)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            8 5543

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.36  E-value=0.0082  Score=52.45  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=54.3

Q ss_pred             cCCceecccccC--CC-cEEEEEEeeeEEEEEEeCCCC-----eEEEEEec--CccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNL--NA-HSIMYAISGSCHVQVVDSYGR-----SVYDGEVR--RGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~--~A-~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~--~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      ++|-+|..|+|.  .+ +++++|++|+...-++|....     +.....|.  .+.+++||.|++|...+-+++..++.+
T Consensus        53 ~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y~  132 (176)
T d1wlta1          53 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  132 (176)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             chheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEEe
Confidence            799999999993  33 479999999999999998632     23444565  566999999999998777665555544


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      .
T Consensus       133 ~  133 (176)
T d1wlta1         133 T  133 (176)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.34  E-value=0.0046  Score=57.25  Aligned_cols=63  Identities=10%  Similarity=0.211  Sum_probs=49.2

Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC---------------------------------eEEEEEecCccE
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR---------------------------------SVYDGEVRRGQI  388 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~---------------------------------~~~~~~l~~Gdv  388 (436)
                      .+|+-..||+.+. +-+...+.|+=++.+..|.-.                                 ..+..+|++|||
T Consensus       130 ~~g~~~~~H~D~~-d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDv  208 (319)
T d1vrba1         130 KNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTM  208 (319)
T ss_dssp             CSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCE
T ss_pred             CCCCCCccccCCC-ceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCE
Confidence            4667789999865 568888999999999976421                                 125567999999


Q ss_pred             EEEcCCCEEEEEeCCCc
Q 046186          389 MVVPQNFAVVKRAGGAE  405 (436)
Q Consensus       389 ~vVP~g~~h~~~ag~e~  405 (436)
                      +|||+||+|...+.++.
T Consensus       209 LYiP~gw~H~v~s~~~s  225 (319)
T d1vrba1         209 LYLPRGLWHSTKSDQAT  225 (319)
T ss_dssp             EEECTTCEEEEECSSCE
T ss_pred             EEeCCCceEEeEecCCe
Confidence            99999999998765443

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0056  Score=51.56  Aligned_cols=61  Identities=20%  Similarity=0.274  Sum_probs=44.0

Q ss_pred             ceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeC-CCcEE--EEEEE
Q 046186          345 AMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAG-GAEFE--WISFK  412 (436)
Q Consensus       345 am~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag-~e~~~--~l~f~  412 (436)
                      .|.-||=+ ....+.||++|+|.+.+=    .+.+  .+++||+|++|.|-+|.. .+. +++++  |+.|.
T Consensus        29 ~~~Rp~g~-~~Y~l~yv~~G~G~~~i~----~~~y--~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F~   93 (161)
T d2arca_          29 FIDRPLGM-KGYILNLTIRGQGVVKNQ----GREF--VCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFR   93 (161)
T ss_dssp             CEEETTCC-SSEEEEEEEEECEEEEET----TEEE--EECTTCEEEECTTCCEEEEECTTSSEEEEEEEEEC
T ss_pred             eEECCCCC-CCEEEEEEEEeEEEEEEC----CEEE--EecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEEe
Confidence            46667766 347999999999999742    2334  499999999999999964 443 35554  44453

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.30  E-value=0.019  Score=51.04  Aligned_cols=73  Identities=14%  Similarity=0.003  Sum_probs=57.4

Q ss_pred             cCCceecccccC--C-CcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNL--N-AHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~--~-A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|.  . -+++++|++|+...=+||....     +.+...|..  +..++||.|++|-..+-+++..++.+
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~  133 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  133 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecc
Confidence            699999999973  3 5689999999999999998642     245666766  45999999999998777766666655


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      -++
T Consensus       134 ~s~  136 (198)
T d2ixca1         134 CSA  136 (198)
T ss_dssp             ESS
T ss_pred             cCC
Confidence            444

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=96.20  E-value=0.017  Score=51.56  Aligned_cols=73  Identities=11%  Similarity=0.043  Sum_probs=55.5

Q ss_pred             cCCceecccccCC---CcEEEEEEeeeEEEEEEeCCCC-----eEEEEEec--CccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNLN---AHSIMYAISGSCHVQVVDSYGR-----SVYDGEVR--RGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~~---A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~--~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|..   .+++++|++|+...-+||-.-.     +.....|.  .+..++||.|++|-..+.+++..++-+
T Consensus        55 ~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~Y~  134 (202)
T d1oi6a_          55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYM  134 (202)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             hhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeEEe
Confidence            6899999999854   4699999999999999997532     12333454  557999999999998887766666554


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      .++
T Consensus       135 ~s~  137 (202)
T d1oi6a_         135 LSR  137 (202)
T ss_dssp             ESS
T ss_pred             cCC
Confidence            443

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.13  E-value=0.015  Score=51.18  Aligned_cols=73  Identities=16%  Similarity=0.123  Sum_probs=56.0

Q ss_pred             cCCceecccccC--CCcEEEEEEeeeEEEEEEeCCCC-----eEEEEEecC--ccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          342 HRNAMMVPHWNL--NAHSIMYAISGSCHVQVVDSYGR-----SVYDGEVRR--GQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       342 ~~gam~~PHwh~--~A~ei~yV~~G~grv~vv~~~G~-----~~~~~~l~~--Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+|-+|..|++.  .-+++++|++|+...-+||....     +.....|..  +..++||.|++|-..+-+++..++-+-
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~~  136 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEecc
Confidence            589999999873  35699999999999999997532     345556766  669999999999987776666554444


Q ss_pred             ec
Q 046186          413 TN  414 (436)
Q Consensus       413 ~s  414 (436)
                      ++
T Consensus       137 s~  138 (184)
T d2ixha1         137 TD  138 (184)
T ss_dssp             SS
T ss_pred             cc
Confidence            33

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=95.95  E-value=0.01  Score=52.62  Aligned_cols=70  Identities=13%  Similarity=0.051  Sum_probs=54.9

Q ss_pred             cCCceecccccCCCcEEEEE-EeeeEEEEEEeCCCC----eEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          342 HRNAMMVPHWNLNAHSIMYA-ISGSCHVQVVDSYGR----SVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV-~~G~grv~vv~~~G~----~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      .+|-+|..|+|+.+ ++++| ..|....-++|...+    +.+...|..+..++||.|++|-..+-+++..++-+-
T Consensus        65 ~kgvlRGlH~q~~~-k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~~  139 (194)
T d1nxma_          65 RKNVLRGLHAEPWD-KYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLV  139 (194)
T ss_dssp             ETTBEEEEEECSSC-EEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             eeeEEEEEEeccch-hhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEec
Confidence            58999999999865 55555 469999999987532    246677899999999999999988877666655443

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=95.88  E-value=0.0082  Score=52.12  Aligned_cols=63  Identities=19%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             EEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEe
Q 046186           70 VRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFAL  149 (436)
Q Consensus        70 ~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~i  149 (436)
                      +.+.=.|+.-.--|+.+.+|++|=++|    ...+-++..|                        .-+...+++||+|.+
T Consensus        38 VMvVGGPN~R~DyH~~~~eE~FyQlkG----~m~Lkv~e~g------------------------~~~di~I~EGe~fLL   89 (174)
T d1yfua1          38 VTVVGGPNHRTDYHDDPLEEFFYQLRG----NAYLNLWVDG------------------------RRERADLKEGDIFLL   89 (174)
T ss_dssp             EEEECSCBCCCCEEECSSCEEEEEEES----CEEEEEEETT------------------------EEEEEEECTTCEEEE
T ss_pred             EEEecCCcccCccccCcchhheeeecc----ceEEEEEeCC------------------------ceEEEEcCCCcEEEe
Confidence            345556666677788889999999999    9999987543                        123578999999999


Q ss_pred             CCCCeEEEecc
Q 046186          150 PAGVAHWCYNE  160 (436)
Q Consensus       150 PaG~~h~~~N~  160 (436)
                      |+.++|.-.-.
T Consensus        90 P~~vpHSPqR~  100 (174)
T d1yfua1          90 PPHVRHSPQRP  100 (174)
T ss_dssp             CTTCCEEEEBC
T ss_pred             CCCCCCCcccC
Confidence            99999998774

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.18  Score=46.42  Aligned_cols=74  Identities=14%  Similarity=0.038  Sum_probs=55.0

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE-EeCCCcEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK-RAGGAEFEWISF  411 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~-~ag~e~~~~l~f  411 (436)
                      .+.+..+.|.+|+....-....-.-++||++|++.+.-..      ....+..+++.++-.+-...+ .++.+++++|.|
T Consensus       166 ~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g~~------~~~~l~~~~~~~l~~gd~~~i~~~~~~~a~~LLl  239 (288)
T d1j1la_         166 PTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDD------AQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  239 (288)
T ss_dssp             CEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTT------SCEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             chhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecCcc------cceeecCceEEEEcCCCeEEEEeCCCCCCEEEEE
Confidence            5667788999999987766666678999999999886211      122478888888888876555 446678888887


Q ss_pred             E
Q 046186          412 K  412 (436)
Q Consensus       412 ~  412 (436)
                      -
T Consensus       240 ~  240 (288)
T d1j1la_         240 A  240 (288)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=95.67  E-value=0.045  Score=48.11  Aligned_cols=73  Identities=12%  Similarity=-0.032  Sum_probs=56.5

Q ss_pred             cCCceecccccC--C-CcEEEEEEeeeEEEEEEeCCCCe-------EEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEE
Q 046186          342 HRNAMMVPHWNL--N-AHSIMYAISGSCHVQVVDSYGRS-------VYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISF  411 (436)
Q Consensus       342 ~~gam~~PHwh~--~-A~ei~yV~~G~grv~vv~~~G~~-------~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f  411 (436)
                      .+|-+|..|+|.  . -+++++|++|+...-+||....+       .+.-....+.+++||.|++|-..+-+++..++-+
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~  133 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  133 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEe
Confidence            589999999863  3 35899999999999999986321       3443457889999999999998787666666554


Q ss_pred             Eec
Q 046186          412 KTN  414 (436)
Q Consensus       412 ~~s  414 (436)
                      .++
T Consensus       134 ~s~  136 (190)
T d2c0za1         134 SSG  136 (190)
T ss_dssp             ESS
T ss_pred             cCC
Confidence            443

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=95.21  E-value=0.07  Score=48.83  Aligned_cols=87  Identities=15%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             EecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCc-ccCCCCCCCCcc--------CCccc--ccccceeeee
Q 046186           73 TIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPET-YQSPQQGGFGES--------AGRSQ--QDSHQKIRRF  141 (436)
Q Consensus        73 ~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et-~~~~~~~~~~~~--------~~~~~--~d~~~k~~~l  141 (436)
                      .-.+|+-..|||.+.+-++..++|    +=+.-+..|...+. +...........        ..+..  ....-....|
T Consensus       128 ~~~~g~~~~~H~D~~d~f~~Qv~G----~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  203 (319)
T d1vrba1         128 AAKNGGGFKAHFDAYTNLIFQIQG----EKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNL  203 (319)
T ss_dssp             EECSSCCCCSEECSSEEEEEEEES----CEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEE
T ss_pred             ecCCCCCCccccCCCceeEEeecc----eEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEE
Confidence            334455688999888889999999    77777776643322 110000000000        00000  0001124689


Q ss_pred             ccCcEEEeCCCCeEEEeccCCC
Q 046186          142 RQGDIFALPAGVAHWCYNEGST  163 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e  163 (436)
                      ++||+++||+|..|+..|.++.
T Consensus       204 ~pGDvLYiP~gw~H~v~s~~~s  225 (319)
T d1vrba1         204 TPGTMLYLPRGLWHSTKSDQAT  225 (319)
T ss_dssp             CTTCEEEECTTCEEEEECSSCE
T ss_pred             CCCCEEEeCCCceEEeEecCCe
Confidence            9999999999999999997543

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.044  Score=47.46  Aligned_cols=70  Identities=14%  Similarity=-0.019  Sum_probs=52.5

Q ss_pred             EEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEe
Q 046186           70 VRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFAL  149 (436)
Q Consensus        70 ~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~i  149 (436)
                      +.+.=.|+.-.--|+.+.+|++|=++|    ...+-++..+-.               ..+     -+...+++||+|.+
T Consensus        36 VmvVGGPN~R~DyH~~~~eE~FYQlkG----dm~Lkv~~~~~~---------------~gk-----~~di~I~EGe~fLL   91 (175)
T d1zvfa1          36 VMIVGGPNERTDYHINPTPEWFYQKKG----SMLLKVVDETDA---------------EPK-----FIDIIINEGDSYLL   91 (175)
T ss_dssp             EEEECSSBCCSCEEECSSCEEEEEEES----CEEEEEEECSSS---------------SCE-----EEEEEECTTEEEEE
T ss_pred             EEEEcCCCcccccccCcchhheeeecC----cEEEEEEecCCC---------------CCc-----eeEEeecCCCEEEe
Confidence            344557777777888889999999999    999988865310               001     12467999999999


Q ss_pred             CCCCeEEEeccCCC
Q 046186          150 PAGVAHWCYNEGST  163 (436)
Q Consensus       150 PaG~~h~~~N~g~e  163 (436)
                      |+.++|.-.-..++
T Consensus        92 P~~vPHSPqR~~~t  105 (175)
T d1zvfa1          92 PGNVPHSPVRFADT  105 (175)
T ss_dssp             CTTCCEEEEECTTC
T ss_pred             CCCCCCCCCCCCCc
Confidence            99999998775444

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.99  E-value=0.076  Score=46.35  Aligned_cols=112  Identities=16%  Similarity=0.080  Sum_probs=67.4

Q ss_pred             cccccccCCCceeecCCcE-EEEeCCC-Cccccccc---eEEEEEEecCCceecCeeec----CCceEEEEecccceEEE
Q 046186           33 INNLEALEPNNRVECEAGV-VETWDPG-HEQFQCAG---VAVVRHTIRQKGLLLPQFSN----SPQLVYILQAYTYRRGS  103 (436)
Q Consensus        33 ~~~l~a~eP~~~~~se~G~-~e~~~~~-~p~l~~~g---v~~~r~~i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g~  103 (436)
                      +..+-..+|. .++-+-|. +|.++.. ...+....   .-...-.-.+|.++..||+.    ...+++|++|    +..
T Consensus         9 I~gv~ii~~~-~f~D~RG~f~e~f~~~~~~~~~~~~~~~~q~n~S~s~kgvlRGlH~q~~~~~q~Klv~~i~G----~I~   83 (183)
T d1dzra_           9 IPDVLILEPK-VFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVG----EVF   83 (183)
T ss_dssp             STTCEEEECC-EEEETTEEEEEEEEHHHHHHHHSSCCCCCEEEEEEEETTBEEEEEEECGGGCCCEEEEEEES----EEE
T ss_pred             CCCeEEEeCC-ceecCCcCEEEeechhhHHHhcccCcceeeeEEeeeccceeEEEEecccccchhhheeeccc----cEE
Confidence            4444555564 36667776 4666521 11110000   11222233799999999984    3589999999    998


Q ss_pred             EEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcEEEeCCCCeEEEeccCCCcEEE
Q 046186          104 HGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFALPAGVAHWCYNEGSTPVVA  167 (436)
Q Consensus       104 ~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~iPaG~~h~~~N~g~e~l~~  167 (436)
                      ..+|+.-- ..||.                  .-....|.+  +..++||+|++|-++...++..++
T Consensus        84 dvvvDlR~~S~t~g------------------~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~  132 (183)
T d1dzra_          84 DVAVDIRKESPTFG------------------QWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFL  132 (183)
T ss_dssp             EEEEECCTTCTTTT------------------CEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEE
T ss_pred             EEEEeccCCCCCCC------------------cEEEEeecCCCceEEEEcCCeEEEEEEecCcceEE
Confidence            88887511 11221                  011356654  569999999999999986643333

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.87  E-value=0.13  Score=45.43  Aligned_cols=75  Identities=11%  Similarity=-0.040  Sum_probs=52.4

Q ss_pred             ecCCceecCeeec----CCceEEEEecccceEEEEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcE
Q 046186           74 IRQKGLLLPQFSN----SPQLVYILQAYTYRRGSHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDI  146 (436)
Q Consensus        74 i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv  146 (436)
                      -.+|.+...||+.    ...+++|++|    +...-+|+.-- ..||.                  .-....|..  +..
T Consensus        53 S~kgvlRGlH~q~~~~~q~Klv~~i~G----~I~dvvvDlR~~S~Tfg------------------k~~~~~L~~~~~~~  110 (198)
T d2ixca1          53 SSAGVLRGLHFAQLPPSQAKYVTCVSG----SVFDVVVDIREGSPTFG------------------RWDSVLLDDQDRRT  110 (198)
T ss_dssp             ECTTBEEEEEEECTTTCCCEEEEEEES----EEEEEEECCCBTCTTTT------------------CEEEEEEETTTCCE
T ss_pred             eehhhheeeeeecccchhhhhhhhhhc----eEEEEEEecccccccCC------------------cEEEEEeecCCcce
Confidence            3799999999973    6689999999    88888876510 01110                  112466665  459


Q ss_pred             EEeCCCCeEEEeccCCCcEEEEEEE
Q 046186          147 FALPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       147 ~~iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      ++||+|++|-++...+. .+++...
T Consensus       111 i~IP~G~aHGf~~L~~~-~~i~Y~~  134 (198)
T d2ixca1         111 IYVSEGLAHGFLALQDN-STVMYLC  134 (198)
T ss_dssp             EEECTTCEEEEEECSSS-EEEEEEE
T ss_pred             EEEcCCcEEEEEeecCc-ceeeccc
Confidence            99999999999988655 4444433

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.76  E-value=0.043  Score=47.66  Aligned_cols=74  Identities=11%  Similarity=0.086  Sum_probs=51.6

Q ss_pred             EecCCceecCeeec----CCceEEEEecccceEEEEEeeCCC-CCCcccCCCCCCCCccCCcccccccceeeee--ccCc
Q 046186           73 TIRQKGLLLPQFSN----SPQLVYILQAYTYRRGSHGDPFPG-YPETYQSPQQGGFGESAGRSQQDSHQKIRRF--RQGD  145 (436)
Q Consensus        73 ~i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g~~g~v~pg-~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l--~~GD  145 (436)
                      .-.+|.+...|||.    ..++++|++|    +...-+|+.- ...||.                  .-....|  ..+.
T Consensus        51 ~s~kgvlRG~H~q~~~~~q~Klv~ci~G----~I~dvvvDlR~~S~Tfg------------------k~~~~~L~~~~~~  108 (176)
T d1wlta1          51 FSRKGVVRGLHYQRTPKEQGKIIFVPKG----RILDVAVDVRKSSPTFG------------------KYVKAELNEENHY  108 (176)
T ss_dssp             EECTTBEEEEEEECTTSCCEEEEEEEES----EEEEEEEECBTTSTTTT------------------CEEEEEEETTTCC
T ss_pred             eechheeeecccccccCCccEEEEEecc----ceEEEEEeeccCCCccc------------------eeeeEEeeccccc
Confidence            34899999999993    3469999999    9888887651 011221                  0113445  4677


Q ss_pred             EEEeCCCCeEEEeccCCCcEEEEE
Q 046186          146 IFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      +++||+|++|-.+...+. ..++.
T Consensus       109 ~l~IP~G~ahGf~~l~d~-~~i~Y  131 (176)
T d1wlta1         109 MLWIPPGFAHGFQALEDS-IVIYF  131 (176)
T ss_dssp             EEEECTTEEEEEEESSSE-EEEEE
T ss_pred             eEEEccceeeEEeecccc-ceEEE
Confidence            999999999999998765 34443

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.046  Score=51.48  Aligned_cols=64  Identities=13%  Similarity=0.140  Sum_probs=48.7

Q ss_pred             EEEecCC-ceecccccCCCcEEEEEEeeeEEEEEEeCCC----------------------------------CeEEEEE
Q 046186          338 RGLLHRN-AMMVPHWNLNAHSIMYAISGSCHVQVVDSYG----------------------------------RSVYDGE  382 (436)
Q Consensus       338 ~v~L~~g-am~~PHwh~~A~ei~yV~~G~grv~vv~~~G----------------------------------~~~~~~~  382 (436)
                      .+-|.+. +....|+-+. +-+..++.|+=++.++.|.-                                  ...+..+
T Consensus       172 ~lwiG~~gs~t~~H~D~~-~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~  250 (335)
T d1h2ka_         172 LLLIGMEGNVTPAHYDEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  250 (335)
T ss_dssp             EEEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             EEEEcCCCCCCccccccc-cceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEE
Confidence            4556555 4455588765 67999999999999997630                                  0246778


Q ss_pred             ecCccEEEEcCCCEEEEEeC
Q 046186          383 VRRGQIMVVPQNFAVVKRAG  402 (436)
Q Consensus       383 l~~Gdv~vVP~g~~h~~~ag  402 (436)
                      |++||+++||.||.|...+-
T Consensus       251 l~pGd~L~iP~~w~H~V~~~  270 (335)
T d1h2ka_         251 VGPGDVLYIPMYWWHHIESL  270 (335)
T ss_dssp             ECTTCEEEECTTCEEEEEEC
T ss_pred             ECCCCEEeeCCCCeEEEEEc
Confidence            99999999999999998654

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.90  E-value=0.15  Score=43.97  Aligned_cols=59  Identities=22%  Similarity=0.210  Sum_probs=46.1

Q ss_pred             EecCCceecccccCCCcEEEEEEeeeEEEEEEeCCC--CeEEEEEecCccEEEEcCCCEEEE
Q 046186          340 LLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYG--RSVYDGEVRRGQIMVVPQNFAVVK  399 (436)
Q Consensus       340 ~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G--~~~~~~~l~~Gdv~vVP~g~~h~~  399 (436)
                      .=.||+=.-=|+++ .-|+.|-++|...+.|++..+  -+..|-.+++||+|..|+..||.=
T Consensus        39 VGGPN~R~DyH~~~-~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSP   99 (175)
T d1zvfa1          39 VGGPNERTDYHINP-TPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSP   99 (175)
T ss_dssp             ECSSBCCSCEEECS-SCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEE
T ss_pred             EcCCCcccccccCc-chhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCC
Confidence            33566655556664 349999999999999998642  245677899999999999999984

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=93.90  E-value=0.17  Score=44.26  Aligned_cols=74  Identities=9%  Similarity=-0.084  Sum_probs=51.3

Q ss_pred             ecCCceecCeeec----CCceEEEEecccceEEEEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeeccCcEEE
Q 046186           74 IRQKGLLLPQFSN----SPQLVYILQAYTYRRGSHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFA  148 (436)
Q Consensus        74 i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~  148 (436)
                      -.+|.+...||+.    ..++++|++|    +....+|+.-- ..||.                .........+.+.+++
T Consensus        53 s~kgvlRGlH~q~~~~~q~Klv~~i~G----~i~dv~vDlR~~S~t~g----------------k~~~~~l~~~~~~~l~  112 (190)
T d2c0za1          53 SVRGVVRGIHFVDVPPGQAKYVTCVRG----AVFDVVVDLRVGSPTYG----------------CWEGTRLDDVSRRAVY  112 (190)
T ss_dssp             EETTBEEEEEEECTTTCCCEEEEEEES----EEEEEEEECCBTCTTTT----------------CEEEEEEETTTCCEEE
T ss_pred             hhhhheeeeeecccccchhheeeeeee----eEEEEEEeeccccceeE----------------EEeeeccccccceeEE
Confidence            3689999999963    4589999999    99988887620 00110                0001134557889999


Q ss_pred             eCCCCeEEEeccCCCcEEE
Q 046186          149 LPAGVAHWCYNEGSTPVVA  167 (436)
Q Consensus       149 iPaG~~h~~~N~g~e~l~~  167 (436)
                      ||+|++|-.+..++...++
T Consensus       113 IP~G~aHGf~~L~~~t~i~  131 (190)
T d2c0za1         113 LSEGIGHGFCAISDEATLC  131 (190)
T ss_dssp             ECTTEEEEEEECSSEEEEE
T ss_pred             ecCCcEEEEeecCchheeE
Confidence            9999999998876543333

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=93.84  E-value=0.2  Score=44.24  Aligned_cols=72  Identities=13%  Similarity=0.076  Sum_probs=50.8

Q ss_pred             EecCCceecCeeec----CCceEEEEecccceEEEEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeee--ccCc
Q 046186           73 TIRQKGLLLPQFSN----SPQLVYILQAYTYRRGSHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRF--RQGD  145 (436)
Q Consensus        73 ~i~pg~l~~Ph~h~----a~ei~yV~~G~~~~~g~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l--~~GD  145 (436)
                      .-.+|.+...||+.    ..++++|++|    +....+|+.-- ..||.                  .-....|  +.+.
T Consensus        53 ~s~k~vlRGlH~q~~~~~q~Klv~ci~G----~i~dv~vD~R~~SpTfg------------------~~~~~~L~~~~~~  110 (202)
T d1oi6a_          53 MSKRGVVRGIHYTVTPPGTAKYVYCARG----KAMDIVIDIRVGSPTFG------------------QWDSVLMDQQDPR  110 (202)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEES----CEEEEEECCCBTCTTTT------------------CEEEEEECSSSCC
T ss_pred             cchhheeeeeeecccccchhheeeeccc----cEEEEEEecccCCCccc------------------eeeeeecccccce
Confidence            34789999999984    3589999999    99998887510 01221                  0112344  4567


Q ss_pred             EEEeCCCCeEEEeccCCCcEE
Q 046186          146 IFALPAGVAHWCYNEGSTPVV  166 (436)
Q Consensus       146 v~~iPaG~~h~~~N~g~e~l~  166 (436)
                      .+.||+|++|.++...+...+
T Consensus       111 ~l~IP~G~aHGf~~L~d~t~v  131 (202)
T d1oi6a_         111 AVYLPVGVGHAFVALEDDTVM  131 (202)
T ss_dssp             EEEECTTCEEEEEECSTTEEE
T ss_pred             eEEeccceeEEEeecccccee
Confidence            999999999999998765333

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=93.59  E-value=0.061  Score=46.47  Aligned_cols=55  Identities=16%  Similarity=0.260  Sum_probs=42.6

Q ss_pred             cCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEE
Q 046186          342 HRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVK  399 (436)
Q Consensus       342 ~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~  399 (436)
                      .||.=.-=|+++ +-||.|=++|...+.|++ +|. ..+-.+++||+|..|++.||.-
T Consensus        43 GPN~R~DyH~~~-~eE~FyQlkG~m~Lkv~e-~g~-~~di~I~EGe~fLLP~~vpHSP   97 (174)
T d1yfua1          43 GPNHRTDYHDDP-LEEFFYQLRGNAYLNLWV-DGR-RERADLKEGDIFLLPPHVRHSP   97 (174)
T ss_dssp             SCBCCCCEEECS-SCEEEEEEESCEEEEEEE-TTE-EEEEEECTTCEEEECTTCCEEE
T ss_pred             CCcccCccccCc-chhheeeeccceEEEEEe-CCc-eEEEEcCCCcEEEeCCCCCCCc
Confidence            344444445553 349999999999999998 444 3567799999999999999986

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.58  E-value=0.13  Score=44.90  Aligned_cols=72  Identities=14%  Similarity=-0.046  Sum_probs=50.6

Q ss_pred             cCCceecCeeec---CCceEEEEecccceEEEEEeeCCCC-CCcccCCCCCCCCccCCcccccccceeeeecc--CcEEE
Q 046186           75 RQKGLLLPQFSN---SPQLVYILQAYTYRRGSHGDPFPGY-PETYQSPQQGGFGESAGRSQQDSHQKIRRFRQ--GDIFA  148 (436)
Q Consensus        75 ~pg~l~~Ph~h~---a~ei~yV~~G~~~~~g~~g~v~pg~-~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~--GDv~~  148 (436)
                      .+|.++..||+.   ...+++|++|    +....+|+.-- ..||.                  .-....|..  +..++
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G----~I~dvvvDlR~~S~Tfg------------------k~~~~~L~~~~~~~l~  114 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLG----EVFDVAVDLRRGSPTFG------------------QWVGERLSAENKRQMW  114 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEES----EEEEEEEECBTTSTTTT------------------CEEEEEEETTTCCEEE
T ss_pred             ccCceEEEEEcccchhheecceeee----EEEEEEeecccCCCCCC------------------ceEEeeecccCccEEE
Confidence            689999999973   5689999999    88888876510 11221                  011356655  66899


Q ss_pred             eCCCCeEEEeccCCCcEEEE
Q 046186          149 LPAGVAHWCYNEGSTPVVAV  168 (436)
Q Consensus       149 iPaG~~h~~~N~g~e~l~~v  168 (436)
                      ||+|++|-.+-..+...++.
T Consensus       115 IP~G~aHGf~~L~~~~~v~Y  134 (184)
T d2ixha1         115 IPAGFAHGFVVLSEYAEFLY  134 (184)
T ss_dssp             ECTTEEEEEEECSSEEEEEE
T ss_pred             ecCCeEEEEEecCCceEEEe
Confidence            99999999998866544433

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=93.48  E-value=0.094  Score=46.15  Aligned_cols=71  Identities=11%  Similarity=-0.063  Sum_probs=50.8

Q ss_pred             cCCceecCeeecCCceEEEEe-cccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCC
Q 046186           75 RQKGLLLPQFSNSPQLVYILQ-AYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGV  153 (436)
Q Consensus        75 ~pg~l~~Ph~h~a~ei~yV~~-G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~  153 (436)
                      .+|.+...||++...+++++. |    ....-+|+.--..||.                  .-....|..+..++||+|+
T Consensus        65 ~kgvlRGlH~q~~~k~v~~~~~G----~i~~V~vD~R~S~t~g------------------~~~~~~l~~~~~i~IP~G~  122 (194)
T d1nxma_          65 RKNVLRGLHAEPWDKYISVADGG----KVLGTWVDLREGETFG------------------NTYQTVIDASKSIFVPRGV  122 (194)
T ss_dssp             ETTBEEEEEECSSCEEEEECSSC----CEEEEEEECBSSTTTT------------------CEEEEEECTTEEEEECTTE
T ss_pred             eeeEEEEEEeccchhhhhhcccc----ceeEEEEEeccccccc------------------eeeeeeeccCceEEEecce
Confidence            689999999999778888775 7    6666666542111221                  1124678899999999999


Q ss_pred             eEEEeccCCCcEEE
Q 046186          154 AHWCYNEGSTPVVA  167 (436)
Q Consensus       154 ~h~~~N~g~e~l~~  167 (436)
                      +|-.+-..++-.+.
T Consensus       123 aHGf~tL~d~t~i~  136 (194)
T d1nxma_         123 ANGFQVLSDFVAYS  136 (194)
T ss_dssp             EEEEEECSSEEEEE
T ss_pred             eeEEEeeccceeEE
Confidence            99999887654433

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.18  Score=49.33  Aligned_cols=50  Identities=14%  Similarity=0.065  Sum_probs=34.9

Q ss_pred             EEecCCceecccccCC-CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEE
Q 046186          339 GLLHRNAMMVPHWNLN-AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVV  398 (436)
Q Consensus       339 v~L~~gam~~PHwh~~-A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~  398 (436)
                      ....+++++.|.+|.| .+|+++.+.|.-...          ..-+.+|.+=+=|.+.+|=
T Consensus       321 w~~~~~tfrpPyyHrNv~sE~m~~i~G~y~ar----------~~gf~pGg~SlHp~g~pHG  371 (439)
T d1eyba_         321 WGVADKTFRPPYYHRNCMSEFMGLIRGHYEAK----------QGGFLPGGGSLHSTMTPHG  371 (439)
T ss_dssp             EECCSSSCCSCCCBCCSCEEEEEECCC------------------CCTTCEEEECTTCCBC
T ss_pred             ccccCCcccCCcccccccceeeeEeecCcccc----------cCCccCCeEEecCCCCCCC
Confidence            3455799999999999 458888888753322          1137799999999999874

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.81  E-value=0.2  Score=43.52  Aligned_cols=74  Identities=16%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             cCCceecCeeec---CCceEEEEecccceEEEEEeeCCC-CCCcccCCCCCCCCccCCcccccccceeeee--ccCcEEE
Q 046186           75 RQKGLLLPQFSN---SPQLVYILQAYTYRRGSHGDPFPG-YPETYQSPQQGGFGESAGRSQQDSHQKIRRF--RQGDIFA  148 (436)
Q Consensus        75 ~pg~l~~Ph~h~---a~ei~yV~~G~~~~~g~~g~v~pg-~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l--~~GDv~~  148 (436)
                      .+|.+...||+.   ...+++|++|    +...-+|+.- .+.||.                  .-....|  +.+..++
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G----~I~dv~vD~R~~S~tfg------------------k~~~~~L~~~~~~~l~  111 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRG----EIFDVAVDLRKNSDTYG------------------EWTGVRLSDENRREFF  111 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEES----EEEEEEEECCTTCTTTT------------------CEEEEEEETTTCCEEE
T ss_pred             ccCceEEeeecCCCcHHhhhccccc----EEEEEEEeccCCCCcCC------------------eeeEEEecCCCcceeE
Confidence            689999999974   4679999999    8888888652 011120                  0113455  4466999


Q ss_pred             eCCCCeEEEeccCCCcEEEEEEE
Q 046186          149 LPAGVAHWCYNEGSTPVVAVVLL  171 (436)
Q Consensus       149 iPaG~~h~~~N~g~e~l~~v~~~  171 (436)
                      ||+|++|-.+...++ .+++...
T Consensus       112 IP~G~aHGf~~L~d~-~~i~Y~~  133 (183)
T d1ep0a_         112 IPEGFAHGFLALSDE-CIVNYKC  133 (183)
T ss_dssp             ECTTEEEEEEECSSE-EEEEEEE
T ss_pred             ecCCceeeeeeccCc-eEEEEec
Confidence            999999999987655 4444433

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=92.56  E-value=0.63  Score=40.07  Aligned_cols=80  Identities=8%  Similarity=-0.011  Sum_probs=61.9

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCC--CC----eEEEEEecCccEEEEcCCC-EEEE-EeCC-
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSY--GR----SVYDGEVRRGQIMVVPQNF-AVVK-RAGG-  403 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~--G~----~~~~~~l~~Gdv~vVP~g~-~h~~-~ag~-  403 (436)
                      ++++..+...||.-..+|=|++++-|+.|++|..+.++.+..  +.    ..-...+.+|++.++.... .|.+ |.+. 
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~  144 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  144 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCC
Confidence            466777889999999999999999999999999999999632  22    2345678999999987654 6866 7764 


Q ss_pred             CcEEEEEEE
Q 046186          404 AEFEWISFK  412 (436)
Q Consensus       404 e~~~~l~f~  412 (436)
                      +.+..|=+.
T Consensus       145 ~~avsLHvY  153 (186)
T d3elna1         145 EPAVSLHLY  153 (186)
T ss_dssp             CCEEEEEEE
T ss_pred             CCeEEEEEe
Confidence            555555444

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=92.51  E-value=0.34  Score=42.15  Aligned_cols=84  Identities=15%  Similarity=0.125  Sum_probs=57.2

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCC-CCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFP-GYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~p-g~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ++.+..+...||...+||=|....++.|++|    .-...+..- +.                +...  ...+...+.+|
T Consensus        67 ~f~i~~i~W~pG~~tpiHdH~~w~~~~vl~G----~l~e~~y~~~~~----------------~~~~--~~~~~~~l~~G  124 (192)
T d2gm6a1          67 RFSIVSFVWGPGQRTPIHDHTVWGLIGMLRG----AEYSQPFVLDGS----------------GRPV--LHGEPTRLEPG  124 (192)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSSCEEEEEEES----CEEEEEEEECTT----------------SCEE--ECSCCEEECTT
T ss_pred             CEEEEEEecCCCCCCCCCCCCCceEEEEEcC----eEEEEEeeeCCC----------------CCcc--cccceEEecCC
Confidence            4788889999999999999997788899999    554443211 10                0000  01234679999


Q ss_pred             cEEEeC--CCCeEEEecc-CCCcEEEEEEE
Q 046186          145 DIFALP--AGVAHWCYNE-GSTPVVAVVLL  171 (436)
Q Consensus       145 Dv~~iP--aG~~h~~~N~-g~e~l~~v~~~  171 (436)
                      |+.++.  .|..|-+.|. +++..+-+=++
T Consensus       125 ~v~~~~~~~~~IH~v~N~~~~~~avSLHvY  154 (192)
T d2gm6a1         125 HVEAVSPTVGDIHRVHNAYDDRVSISIHVY  154 (192)
T ss_dssp             CEEEEBTTTBCCEEEEESCSSSCEEEEEEE
T ss_pred             CEEEECCCCCceeEEecCCCCccEEEEEEC
Confidence            998873  4679999996 55655544443

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=91.36  E-value=0.87  Score=44.37  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=60.4

Q ss_pred             ecCCcEEEEeCCCCccccccceEEEEEEecCCc--eecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCC
Q 046186           46 ECEAGVVETWDPGHEQFQCAGVAVVRHTIRQKG--LLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGF  123 (436)
Q Consensus        46 ~se~G~~e~~~~~~p~l~~~gv~~~r~~i~pg~--l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~  123 (436)
                      ..+.+.+..+....+     ...+.++++.++.  ....+-.+++.|+.|++|    ++++..-.               
T Consensus       341 ~~~~~~~~~y~~~~~-----~F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G----~~~i~~~~---------------  396 (440)
T d1pmia_         341 KGDAVKSVLYDPPIA-----EFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNG----KGTIQITG---------------  396 (440)
T ss_dssp             EESCSEEEEECCSSS-----SCEEEEEECCTTTCCEEEECCCSSCEEEEEEES----EEEEEETT---------------
T ss_pred             ccCCcceEEeCCCCC-----ceEEEEEEECCCCCceeeecCCCCcEEEEEEcC----EEEEEecC---------------
Confidence            344555555554333     3577888887654  233333457899999999    99886411               


Q ss_pred             CccCCcccccccceeeeeccCcEEEeCCCCeEEEeccC---CCcEEEEEEE
Q 046186          124 GESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEG---STPVVAVVLL  171 (436)
Q Consensus       124 ~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g---~e~l~~v~~~  171 (436)
                                .......|++||+++||+|....+.+.+   +++++++-.|
T Consensus       397 ----------~~~~~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~~rA~  437 (440)
T d1pmia_         397 ----------DDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAF  437 (440)
T ss_dssp             ----------CGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCEEEEEE
T ss_pred             ----------CCccEEEeCCceEEEEcCCceEEEEeecCCCCCceEEEEEe
Confidence                      0122579999999999999987777655   3456655443

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.17  E-value=1.9  Score=35.57  Aligned_cols=99  Identities=14%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             CCCeEEEEeCCCCCCccccccceEEEEEecCCceecccccC--CCcEEEEEEeee-EEEEEEeCCCCe---EEEEEecCc
Q 046186          313 QGAGHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVPHWNL--NAHSIMYAISGS-CHVQVVDSYGRS---VYDGEVRRG  386 (436)
Q Consensus       313 ~~~G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~PHwh~--~A~ei~yV~~G~-grv~vv~~~G~~---~~~~~l~~G  386 (436)
                      |.||.++++...+...-+ --+++-+--|+++...  |||.  +++|+-+...|. .++-++.++|..   ++-..+.+|
T Consensus        17 PEGG~f~et~rs~~~~~R-~~~T~IYyLL~~~~~s--~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~g   93 (140)
T d1znpa1          17 PEGGFYHQTFRDKAGGER-GHSTAIYYLLEKGVRS--HWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEG   93 (140)
T ss_dssp             TTSSEEEEEEECSSSTTT-CSCEEEEEEEESSCCE--EEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTT
T ss_pred             CCCceEEEEEECCCCCCC-cceEEEEEEcCCCCCC--ccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCcccC
Confidence            467777766443332222 2355556667888764  7775  477887778887 778888887752   333456778


Q ss_pred             c--EEEEcCCCEEEEEeCCCcEEEEEEEecC
Q 046186          387 Q--IMVVPQNFAVVKRAGGAEFEWISFKTND  415 (436)
Q Consensus       387 d--v~vVP~g~~h~~~ag~e~~~~l~f~~s~  415 (436)
                      +  .+|||+|....-... .+.-+++...+.
T Consensus        94 e~~q~vVp~g~W~aa~~~-g~~sLvsctVaP  123 (140)
T d1znpa1          94 ERPQVIVPANCWQSAESL-GDFTLVGCTVSP  123 (140)
T ss_dssp             EESEEEECTTCEEEEEES-SSEEEEEEEESS
T ss_pred             CceeEEECCCeEEeeeEC-CCeEEEEeEecC
Confidence            8  789999998765332 456667665543

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.33  Score=45.24  Aligned_cols=90  Identities=14%  Similarity=0.022  Sum_probs=52.3

Q ss_pred             EEEEecCCceecC-eeecCCceEEEEecccceEEEEEeeCCCCCC-cccCCCCC-CCCcc-------CCcc---cccccc
Q 046186           70 VRHTIRQKGLLLP-QFSNSPQLVYILQAYTYRRGSHGDPFPGYPE-TYQSPQQG-GFGES-------AGRS---QQDSHQ  136 (436)
Q Consensus        70 ~r~~i~pg~l~~P-h~h~a~ei~yV~~G~~~~~g~~g~v~pg~~e-t~~~~~~~-~~~~~-------~~~~---~~d~~~  136 (436)
                      ..+-|.+.|...| ||-....+..+++|    +=++-++.|.... .+..+... ....+       .-.+   .....-
T Consensus       171 ~~lwiG~~gs~t~~H~D~~~~~~~q~~G----~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~  246 (335)
T d1h2ka_         171 NLLLIGMEGNVTPAHYDEQQNFFAQIKG----YKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVG  246 (335)
T ss_dssp             CEEEEECTTCEEEEECCSEEEEEEEEES----CEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCE
T ss_pred             eEEEEcCCCCCCccccccccceEEEecc----ceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCc
Confidence            3466777776555 66557789999999    7788777664321 11111000 00000       0000   001111


Q ss_pred             eeeeeccCcEEEeCCCCeEEEeccCCC
Q 046186          137 KIRRFRQGDIFALPAGVAHWCYNEGST  163 (436)
Q Consensus       137 k~~~l~~GDv~~iPaG~~h~~~N~g~e  163 (436)
                      ....|++||+++||+|..|...|..+.
T Consensus       247 ~~~~l~pGd~L~iP~~w~H~V~~~~~~  273 (335)
T d1h2ka_         247 YETVVGPGDVLYIPMYWWHHIESLLNG  273 (335)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEECTTS
T ss_pred             eEEEECCCCEEeeCCCCeEEEEEcCCC
Confidence            236799999999999999999997553

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=89.11  E-value=2.1  Score=36.61  Aligned_cols=87  Identities=11%  Similarity=-0.040  Sum_probs=61.5

Q ss_pred             ceEEEEEEecCCceecCeeec-CCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccC
Q 046186           66 GVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQG  144 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~G  144 (436)
                      ++.+..+...||...++|=|+ +..++.|++|    +.....-.....               +.... .......+.+|
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G----~l~e~~Y~~~~~---------------~~~~l-~~~~~~~~~~g  124 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQG----NLKETLFDWPDK---------------KSNEM-IKKSERTLREN  124 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEES----CEEEEEECCCCS---------------SCCCC-CEEEEEEECTT
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEccc----ceEEEEeecCCC---------------Ccccc-cccceEEecCC
Confidence            588888999999999999997 8999999999    666654321100               00000 01125789999


Q ss_pred             cEEEeCCC-CeEEEeccC-CCcEEEEEEEe
Q 046186          145 DIFALPAG-VAHWCYNEG-STPVVAVVLLD  172 (436)
Q Consensus       145 Dv~~iPaG-~~h~~~N~g-~e~l~~v~~~d  172 (436)
                      |+.++... -.|-+.|.+ +++++.+=++.
T Consensus       125 ~v~~~~~~~~iH~v~N~~~~~~avsLHvYs  154 (186)
T d3elna1         125 QCAYINDSIGLHRVENVSHTEPAVSLHLYS  154 (186)
T ss_dssp             CEEEECTTTCEEEEECCCSSCCEEEEEEEE
T ss_pred             CEEEeCCCCCcceeecCCCCCCeEEEEEeC
Confidence            99988765 489999987 57777665554

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=88.48  E-value=1.5  Score=37.83  Aligned_cols=70  Identities=11%  Similarity=-0.054  Sum_probs=54.2

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCC--e---EEEEEecCccEEEE--cCCCEEEE-EeCC
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGR--S---VYDGEVRRGQIMVV--PQNFAVVK-RAGG  403 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~--~---~~~~~l~~Gdv~vV--P~g~~h~~-~ag~  403 (436)
                      ++.+..+...||.-.+||=|+ ++.+..|++|....+++...+.  .   .-...+.+||+.+|  +.|..|.+ |++.
T Consensus        67 ~f~i~~i~W~pG~~tpiHdH~-~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~  144 (192)
T d2gm6a1          67 RFSIVSFVWGPGQRTPIHDHT-VWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYD  144 (192)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCS
T ss_pred             CEEEEEEecCCCCCCCCCCCC-CceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCC
Confidence            467778899999999999996 4588889999999999975432  1   12445899999887  34668988 7654

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=88.05  E-value=4.7  Score=33.64  Aligned_cols=102  Identities=13%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             CCCeEEEEeCCCCCCc-cccccceEEEEEecCCceecccccC-CCcEEEEEEeee-EEEEEEeCCCCe---EEEEEecCc
Q 046186          313 QGAGHITTLNSFNLPV-LRWIQLSAERGLLHRNAMMVPHWNL-NAHSIMYAISGS-CHVQVVDSYGRS---VYDGEVRRG  386 (436)
Q Consensus       313 ~~~G~~~~~~~~~~P~-L~~l~ls~~~v~L~~gam~~PHwh~-~A~ei~yV~~G~-grv~vv~~~G~~---~~~~~l~~G  386 (436)
                      |.||+++++...+-.. -..--+++-+.-|++|...  |||. +++|+-+...|. .++-+++++|+.   ++-.++..|
T Consensus        17 PEGG~fret~rs~~~~~~~R~~~T~IY~LL~~~~~S--~~Hrv~sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~g   94 (158)
T d1yuda1          17 VEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVS--HFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG   94 (158)
T ss_dssp             TTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCE--EEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCceEEEEEeCCCCCCCCCcceEEEEEEecCCCCC--ceEEecCCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCcC
Confidence            3667776653322111 1122356666777888764  4666 478887777777 578888998863   233346778


Q ss_pred             cE--EEEcCCCEEEEEeCCCcEEEEEEEecCC
Q 046186          387 QI--MVVPQNFAVVKRAGGAEFEWISFKTNDN  416 (436)
Q Consensus       387 dv--~vVP~g~~h~~~ag~e~~~~l~f~~s~~  416 (436)
                      +.  +|||+|.........++.-+|+...+.-
T Consensus        95 e~~q~vVp~g~w~~a~~~~g~~sLvsctVaPG  126 (158)
T d1yuda1          95 ERPQFLVPKGCIFGSAMNQDGFSLVGCMVSPG  126 (158)
T ss_dssp             EESCEEECTTCEEEEEESSSSEEEEEEEESSC
T ss_pred             ceeEEEEcCCCEEEEEEcCCCcEEEEEEEcCC
Confidence            87  9999996544333456788888877653

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.67  E-value=0.73  Score=44.92  Aligned_cols=87  Identities=14%  Similarity=0.146  Sum_probs=54.8

Q ss_pred             eEEEEeCCCCCCccccccceEEEEEecCCceecc-cccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCC
Q 046186          316 GHITTLNSFNLPVLRWIQLSAERGLLHRNAMMVP-HWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQN  394 (436)
Q Consensus       316 G~~~~~~~~~~P~L~~l~ls~~~v~L~~gam~~P-Hwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g  394 (436)
                      |..+.+.+-+-..=.  ||++- +..-.-+|--. ..|..+++++||.+|++++.-  .-|.  +  .+++||.+|||+|
T Consensus       114 Gl~t~~g~Gd~~~~~--G~aih-iy~~n~sM~~~~f~NADGDeLi~~~~Gsg~l~T--efG~--L--~v~pGDyvVIPRG  184 (439)
T d1eyba_         114 GLHTLCGAGDIKSNN--GLAIH-IFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYT--EFGK--M--LVQPNEICVIQRG  184 (439)
T ss_dssp             TEEEEEEESCGGGTC--CEEEE-EEEECSCCCSEEEEESSEEEEEEEEESCEEEEE--TTEE--E--EECTTEEEEECTT
T ss_pred             ceeeecccCCccccc--CcEEE-EEecCCCCccceeEcCCCCEEEEEEeCcEEEEE--eeeE--E--EecCCcEEEecCc
Confidence            555544443333223  45433 34444566544 478888999999999999873  2232  3  3899999999999


Q ss_pred             CEEEEEeCCCcEEEEEEE
Q 046186          395 FAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       395 ~~h~~~ag~e~~~~l~f~  412 (436)
                      ..+.+...+ +...+.+.
T Consensus       185 ~~frv~~~~-~~r~yiiE  201 (439)
T d1eyba_         185 MRFSIDVFE-ETRGYILE  201 (439)
T ss_dssp             CCEEEECSS-SEEEEEEE
T ss_pred             eEEEEecCC-CceEEEEe
Confidence            987765443 44444433

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=86.50  E-value=0.94  Score=35.94  Aligned_cols=71  Identities=13%  Similarity=0.031  Sum_probs=50.7

Q ss_pred             CCceecccc--cCCCcE--EEEEEeeeEEEEEEeCCCCe--EEEEEecCccEEEEcCCCEEEEEeCCCcEEE-EEEEe
Q 046186          343 RNAMMVPHW--NLNAHS--IMYAISGSCHVQVVDSYGRS--VYDGEVRRGQIMVVPQNFAVVKRAGGAEFEW-ISFKT  413 (436)
Q Consensus       343 ~gam~~PHw--h~~A~e--i~yV~~G~grv~vv~~~G~~--~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~-l~f~~  413 (436)
                      |-+++..|.  |.++-.  -+-|++|+.+.-.+...+..  --.-.+.+|+.-+||..++|.+..-+++++| |.|+.
T Consensus        23 P~~ll~~H~~~nTK~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~v~Fy~  100 (109)
T d3bb6a1          23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFV  100 (109)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEEE
T ss_pred             hHHHHhhccCCCcCCcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEEEEEEEE
Confidence            456678885  677655  46799999998766543321  1122378999999999999999876666776 77774

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=85.91  E-value=1.2  Score=34.18  Aligned_cols=72  Identities=13%  Similarity=0.063  Sum_probs=54.7

Q ss_pred             cceEEEEEecCCceecccccCCCcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEEEEcCCCEEEEEeCCCcEEEEEEE
Q 046186          333 QLSAERGLLHRNAMMVPHWNLNAHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIMVVPQNFAVVKRAGGAEFEWISFK  412 (436)
Q Consensus       333 ~ls~~~v~L~~gam~~PHwh~~A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~vVP~g~~h~~~ag~e~~~~l~f~  412 (436)
                      |--.....+.||   +-+++..+.|+.-|+.|+..|.+-+...    -..+.+|+-|-||++--.-+.+ .+...++|.+
T Consensus        21 g~~kTlGVm~pG---eY~F~T~~~E~MeivsG~l~V~lpg~~e----w~~~~~G~sF~Vpans~F~ikv-~~~~~Y~C~y   92 (93)
T d2oyza1          21 GQDVSVGVMLPG---EYTFGTQAPERMTVVKGALVVKRVGEAD----WTTYSSGESFDVEGNSSFELQV-KDATAYLCEY   92 (93)
T ss_dssp             TEEEEEEEECSE---EEEEEESSCEEEEEEESEEEEEETTCSS----CEEEETTCEEEECSSEEEEEEE-SSCEEEEEEC
T ss_pred             CCeeEEEEEecc---EEEEcCCCCEEEEEEeeEEEEECCCCcc----cEEeCCCCeEEECCCCEEEEEE-CcceeeEEEe
Confidence            344555667777   4689999999999999999999876542    2347899999999887766655 4667888754

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=84.41  E-value=0.95  Score=41.95  Aligned_cols=59  Identities=19%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             ceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCc
Q 046186           66 GVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGD  145 (436)
Q Consensus        66 gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GD  145 (436)
                      ..++.++++.. ....+ ..++..+++|++|    ++++..                            ......|++||
T Consensus       246 ~F~~~~~~~~~-~~~~~-~~~~~~il~vi~G----~~~i~~----------------------------~~~~~~l~~G~  291 (315)
T d1qwra_         246 YFSVYKWDING-EAEMA-QDESFLICSVIEG----SGLLKY----------------------------EDKTCPLKKGD  291 (315)
T ss_dssp             SCEEEEEEEEE-EEEEC-CCSSCEEEEEEEE----EEEEEE----------------------------TTEEEEEETTC
T ss_pred             cEEEEEEEecC-cEEec-cCCCcEEEEEEeC----eEEEEE----------------------------CCEEEEEecCc
Confidence            46777778763 33221 1247899999999    988863                            12357899999


Q ss_pred             EEEeCCCCeEEEe
Q 046186          146 IFALPAGVAHWCY  158 (436)
Q Consensus       146 v~~iPaG~~h~~~  158 (436)
                      .++|||++..+..
T Consensus       292 ~~~ipa~~~~~~i  304 (315)
T d1qwra_         292 HFILPAQMPDFTI  304 (315)
T ss_dssp             EEEECTTCCCEEE
T ss_pred             EEEEECCCCCEEE
Confidence            9999999876655

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.02  E-value=3  Score=37.76  Aligned_cols=106  Identities=10%  Similarity=0.092  Sum_probs=69.3

Q ss_pred             CCccccccccC-CCceeecCCcEEEEeCC-----CCccccccceEEEEEEecCCceecCeeec-CCceEEEEecccceEE
Q 046186           30 DCQINNLEALE-PNNRVECEAGVVETWDP-----GHEQFQCAGVAVVRHTIRQKGLLLPQFSN-SPQLVYILQAYTYRRG  102 (436)
Q Consensus        30 ~C~~~~l~a~e-P~~~~~se~G~~e~~~~-----~~p~l~~~gv~~~r~~i~pg~l~~Ph~h~-a~ei~yV~~G~~~~~g  102 (436)
                      ...++.+.+.+ |  +++.++..++++..     ..|......+.+..+.+++++....-... ...++||++|    .+
T Consensus       126 ~P~y~~~~~~diP--~~~~~~~~~~vi~G~~~g~~~pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G----~~  199 (288)
T d1j1la_         126 EPQYQELKSEEIP--KPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISG----DV  199 (288)
T ss_dssp             CCEEEEECGGGSC--CCEETTEEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEES----CE
T ss_pred             cccccccccccCc--ccccccceEEEEeccccccccccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEe----eE
Confidence            34455554433 3  24556666666543     23555566889999999999975444333 5578999999    77


Q ss_pred             EEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeeeccCcEEEeCCCCeEEEeccCCCcEEEEE
Q 046186          103 SHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRFRQGDIFALPAGVAHWCYNEGSTPVVAVV  169 (436)
Q Consensus       103 ~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l~~GDv~~iPaG~~h~~~N~g~e~l~~v~  169 (436)
                      .++-.                            .....+..++++++-+|-.--+.+.+++++.++.
T Consensus       200 ~v~g~----------------------------~~~~~l~~~~~~~l~~gd~~~i~~~~~~~a~~LL  238 (288)
T d1j1la_         200 YIGPD----------------------------DAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL  238 (288)
T ss_dssp             EESCT----------------------------TSCEEECTTEEEEECSCSEEEEECCSSSCEEEEE
T ss_pred             EecCc----------------------------ccceeecCceEEEEcCCCeEEEEeCCCCCCEEEE
Confidence            77510                            1135788888888888877667777777776654

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=82.76  E-value=0.91  Score=41.97  Aligned_cols=90  Identities=18%  Similarity=0.204  Sum_probs=54.8

Q ss_pred             ccccceEEEEEEecCCceecCeeecCCceEEEEecccceEEEEEeeCCCCCCcccCCCCCCCCccCCcccccccceeeee
Q 046186           62 FQCAGVAVVRHTIRQKGLLLPQFSNSPQLVYILQAYTYRRGSHGDPFPGYPETYQSPQQGGFGESAGRSQQDSHQKIRRF  141 (436)
Q Consensus        62 l~~~gv~~~r~~i~pg~l~~Ph~h~a~ei~yV~~G~~~~~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~d~~~k~~~l  141 (436)
                      +.+....+.++.+.|||.+.||.=.. +..+-..+  +.+..+-++.+  +..               .+.. ...+..+
T Consensus        86 ~~~~~~r~~rirL~pGg~I~pH~D~~-~~~~~~~~--~~RiHIPL~Tn--~~~---------------~f~v-~~~~~~m  144 (290)
T d1e5ra_          86 FDGTHLQMARSRNLKNAIVIPHRDFV-ELDREVDR--YFRTFMVLEDS--PLA---------------FHSN-EDTVIHM  144 (290)
T ss_dssp             BCSSSEEEEEEEEEESEEEEEECCC---------C--BCCEEEECSCC--TTE---------------EEEE-TTEEECC
T ss_pred             cccceeeeeeeeecCCcEecCCcCCc-cccccCCc--eEEEEEEeecC--Cce---------------EEEE-CCEEEEC
Confidence            34556788889999999999986421 11111111  12445554433  111               1111 2347899


Q ss_pred             ccCcEEEeCCCCeEEEeccCCCc-EEEEEEEecC
Q 046186          142 RQGDIFALPAGVAHWCYNEGSTP-VVAVVLLDVA  174 (436)
Q Consensus       142 ~~GDv~~iPaG~~h~~~N~g~e~-l~~v~~~d~~  174 (436)
                      ++|.++++-.+.+|+..|.|+++ +.+  ++|..
T Consensus       145 ~~Ge~w~~D~~~~H~v~N~sd~dRIHL--ViD~~  176 (290)
T d1e5ra_         145 RPGEIWFLDAATVHSAVNFSEISRQSL--CVDFA  176 (290)
T ss_dssp             CTTEEEECCTTSCEEEEESSSSCCCEE--EEEEB
T ss_pred             CCCeEEEEcCCCeEEEECCCCCceEEE--EEEec
Confidence            99999999999999999999864 443  35654

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.40  E-value=1.4  Score=34.65  Aligned_cols=35  Identities=23%  Similarity=0.508  Sum_probs=32.1

Q ss_pred             CcEEEEEEeeeEEEEEEeCCCCeEEEEEecCccEE
Q 046186          355 AHSIMYAISGSCHVQVVDSYGRSVYDGEVRRGQIM  389 (436)
Q Consensus       355 A~ei~yV~~G~grv~vv~~~G~~~~~~~l~~Gdv~  389 (436)
                      ++.+.|+++|.+++...+.+|+...-..+.+||+|
T Consensus        30 ~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~   64 (134)
T d2oz6a2          30 CETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF   64 (134)
T ss_dssp             CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             CCEEEEEEEcccceeeeecccccceeeeccCCCcc
Confidence            67899999999999999999988777789999998