Citrus Sinensis ID: 046220
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 774 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | yes | no | 0.943 | 0.964 | 0.425 | 1e-161 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.939 | 0.938 | 0.385 | 1e-132 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.874 | 0.926 | 0.361 | 1e-115 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.863 | 0.891 | 0.357 | 1e-105 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.545 | 0.523 | 0.267 | 2e-25 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.542 | 0.365 | 0.240 | 3e-12 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | no | no | 0.541 | 0.358 | 0.242 | 7e-12 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.541 | 0.358 | 0.242 | 7e-12 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | no | no | 0.542 | 0.359 | 0.236 | 1e-11 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.542 | 0.354 | 0.238 | 1e-11 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 570 bits (1469), Expect = e-161, Method: Compositional matrix adjust.
Identities = 331/778 (42%), Positives = 459/778 (58%), Gaps = 48/778 (6%)
Query: 3 SFTGFILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSS 62
S T F L++ C V S++S D+ TYIVHM K+ MP+ F H +WY S+L S+S
Sbjct: 7 SSTAFFLLLCLGFCHVSSSSS-----DQGTYIVHMAKSQMPSSFDLHSNWYDSSLRSIS- 60
Query: 63 PDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLK 122
D+ LYTY + + GFS L+Q +L PG E LHTT TP F+GL
Sbjct: 61 ---DSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLD 117
Query: 123 KH-AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCN 181
+H A L+P AG SDV+VGV+D+GVWPES S+ D+G P+P W+G CE G F AS CN
Sbjct: 118 EHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCN 177
Query: 182 RKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGT 241
RKLIGAR F +G + I + + SPRD GHGTHTSST AGS V+ A+ GYA GT
Sbjct: 178 RKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGT 237
Query: 242 AIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPI 301
A G+AP AR+A+YK+ + + D+LA +D+AIAD V+V+S+SLG + + + +
Sbjct: 238 ARGMAPRARVAVYKVCWLGGCFSS---DILAAIDKAIADNVNVLSMSLGGGMSDYYRDGV 294
Query: 302 AIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEE--- 358
AIGAFAA+++GI V+CSAGN+GP S+ N APWITTVGAGT+DR+F A LGN +
Sbjct: 295 AIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFT 354
Query: 359 -LSVIGKSVYPENLFVSREPIYFGYGNRSK----EICEGNSTDPRAVAGKYIFCAFDYKG 413
+S+ P+ L P + GN S +C + P V GK + C D
Sbjct: 355 GVSLFKGEALPDKLL----PFIYA-GNASNATNGNLCMTGTLIPEKVKGKIVMC--DRGI 407
Query: 414 NITVSQQLEEVRRTRAAGAII--SADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADN 471
N V Q+ + V+ G I+ +A + + L +P TV G++++ Y+ N
Sbjct: 408 NARV-QKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPN 466
Query: 472 ATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV-PNRPIAT 530
T SI T++G KPSP VA FSSRGP+ +P ILKPD++APGV+IL AW P
Sbjct: 467 PTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGL 526
Query: 531 IRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDM 590
D ++ E+ + SGTSMSCPH +G+A LLK+ H EWS AAIRSA+MTTA
Sbjct: 527 ASDSRRV--EFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKP 584
Query: 591 IADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTS 650
+ DI+TG TP D GAGH++P A +PGL+YD+ +DY+ +LCALNYTS QIR ++
Sbjct: 585 LLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVS-RR 643
Query: 651 NFTCE----HGNLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTV 706
N+TC+ + DLNYPSF + N ++ + R +T+V + V G+ +
Sbjct: 644 NYTCDPSKSYSVADLNYPSFAV--NVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKI 701
Query: 707 AVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPI 764
+V+P L+F E + K + +T ++ S K + +FG + W + GKH V SP+
Sbjct: 702 SVEPAVLNFKEANEKKSYTVTFTVD-----SSKPSGSNSFGSIEWSD--GKHVVGSPV 752
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 306/793 (38%), Positives = 437/793 (55%), Gaps = 66/793 (8%)
Query: 7 FILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAP-FSTHHHWYMS-----TLSSL 60
F+ +I + C S++S + ++TYIV + + A F++ W++S L
Sbjct: 7 FLCIIFLLFC---SSSSEIL--QKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVE 61
Query: 61 SSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVG 120
+ + LY+Y ++GF+A L+++ + L+ P + + TT++ KF+G
Sbjct: 62 EEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLG 121
Query: 121 LKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNAS 178
L ++G+W + FG I+GV+D+GVWPESPSF D GMP +P +W+G C+ G F++S
Sbjct: 122 LDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSS 181
Query: 179 HCNRKLIGARSFNKGLKQYGLKIST---TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYF 235
CNRKLIGAR F +G + + +Y S RD GHGTHT+ST+ GS V AN
Sbjct: 182 SCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVL 241
Query: 236 GYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL-GFPET 294
G G A G+AP A IA+YK+ ++N + D+LA +D AI D VDV+SLSL GFP
Sbjct: 242 GNGAGVARGMAPGAHIAVYKVCWFNGCYSS---DILAAIDVAIQDKVDVLSLSLGGFPIP 298
Query: 295 TFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTL 354
+D+ IAIG F A+++GI V C+AGN+GP S+ N APW++T+GAGT+DR F A V L
Sbjct: 299 LYDDT-IAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRL 357
Query: 355 GNEELSVIGKSVYP----ENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFD 410
N +L + G+S+YP +N E IY G++ E C S + GK + C
Sbjct: 358 ANGKL-LYGESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICDRG 416
Query: 411 YKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFD---MPFVTVNLNNGELVKKYII 467
G S++ E V+ A+I A++ N D +P + L+K Y+
Sbjct: 417 VNGR---SEKGEAVKEAGGV-AMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYV- 471
Query: 468 NADNATVSIKFQI----TILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV 523
NATV K +I T++G +P+VA+FS+RGPSL +P ILKPD++APGV+I+ AW
Sbjct: 472 ---NATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWP 528
Query: 524 PNR-PIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582
N P D ++ + + SGTSMSCPH +GI L+++ + WS AAI+SA+MTTAD
Sbjct: 529 QNLGPTGLPYDSRRV--NFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTAD 586
Query: 583 VLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQ 642
+ D I D AG GAGH+NP KA++PGLVY+I+ DYI YLC L +T
Sbjct: 587 LYDRQGKAIKD-GNKPAGV-FAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSD 644
Query: 643 IRVLTGTSNFTC-----EHGNLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAV 697
I +T N +C ++ LNYPS +I T +RV TNV S+Y+
Sbjct: 645 ILAIT-HKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRV-TNVGSPNSIYSVN 702
Query: 698 VKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNF-----GYLTWF 752
VKAP G+ V V P L F KH + V L K+N G G LTW
Sbjct: 703 VKAPEGIKVIVNPKRLVF--KHVDQTLSYRVWFVL-----KKKNRGGKVASFAQGQLTWV 755
Query: 753 EV-NGKHQVRSPI 764
N +VRSPI
Sbjct: 756 NSHNLMQRVRSPI 768
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 272/753 (36%), Positives = 404/753 (53%), Gaps = 76/753 (10%)
Query: 30 RKTYIVHMDKAAMPAPFSTH-HHWYM--STLSSLSSPDGDAPTHLYTYNHVVDGFSAVLS 86
+ YIV+M + + P S H HH M + S +P+ + L+TY +GF+ L+
Sbjct: 31 KNIYIVYMGRK-LEDPDSAHLHHRAMLEQVVGSTFAPE----SVLHTYKRSFNGFAVKLT 85
Query: 87 QTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGV 146
+ + + M G +L LHTT + F+G + S+++VGV+D+G+
Sbjct: 86 EEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPR--RSQVESNIVVGVLDTGI 143
Query: 147 WPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206
WPESPSF D+G P P +W+G CE F CNRK+IGARS++ G + + D
Sbjct: 144 WPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKIIGARSYHIG------RPISPGD 194
Query: 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAA 266
+ PRD GHGTHT+ST AG V AN +G GTA G P+ARIA YK+ +ND +
Sbjct: 195 VNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVC-WND--GCS 251
Query: 267 AVDVLAGMDQAIADGVDVMSLSLG--FPETTFDENPIAIGAFAALKKGIFVACSAGNSGP 324
D+LA D AIADGVD++SLS+G P F + IAIG+F A+++GI + SAGN GP
Sbjct: 252 DTDILAAYDDAIADGVDIISLSVGGANPRHYF-VDAIAIGSFHAVERGILTSNSAGNGGP 310
Query: 325 RPYSIENGAPWITTVGAGTVDREFAARVTLGNEE------LSVIGKSVYPENLFVSREPI 378
++ + +PW+ +V A T+DR+F +V +GN + ++ YP L R+
Sbjct: 311 NFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQYYP--LVSGRDIP 368
Query: 379 YFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438
G+ + C S +P + GK + C + G + L+ AAG ++++++
Sbjct: 369 NTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF-GPHEFFKSLDG-----AAGVLMTSNT 422
Query: 439 RQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRG 498
R + + +P ++ N+ +YI + + +I TIL +P V FSSRG
Sbjct: 423 RD--YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRG 479
Query: 499 PSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIA 558
P+ + ++KPDI PGV+IL AW P+ IR T + + SGTSMSCPH GIA
Sbjct: 480 PNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRN----TLFNIISGTSMSCPHITGIA 535
Query: 559 TLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDP 618
T +K + WS AAI+SA+MTTA ++ ++ A+ + +G+GH+NP KA+ P
Sbjct: 536 TYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFA---------YGSGHVNPLKAVRP 586
Query: 619 GLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNL----DLNYPSFIIILNNTN 674
GLVYD DY+ +LC Y +Q +R +TG + C GN DLNYPSF + ++ +
Sbjct: 587 GLVYDANESDYVKFLCGQGYNTQAVRRITGDYS-ACTSGNTGRVWDLNYPSFGLSVSPSQ 645
Query: 675 TASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGN 734
T + F R LT+VA S Y A++ AP G+T++V P LSF+ + F LTV
Sbjct: 646 TFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV------ 699
Query: 735 DVSPKRNYLGNF---GYLTWFEVNGKHQVRSPI 764
R + F L W + G H VRSPI
Sbjct: 700 -----RGSIKGFVVSASLVWSD--GVHYVRSPI 725
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 262/732 (35%), Positives = 394/732 (53%), Gaps = 64/732 (8%)
Query: 53 YMSTLSSLSSPDGDAPTH-LYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLH 111
+++ LSSL+ +A +Y+Y + F+A LS K + +M + LH
Sbjct: 56 HINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLH 115
Query: 112 TTHTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEV 171
TT + FVGL A A DVI+GV+D+G+ P+S SF D G+ P P +W+G+C
Sbjct: 116 TTKSWDFVGLPLTAKRHLKAE--RDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSC-- 171
Query: 172 GVEFNASHCNRKLIGARSF-NKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQ 230
G N + CN K+IGA+ F + G G + SP D GHGTHTSST+AG V
Sbjct: 172 GPYKNFTGCNNKIIGAKYFKHDGNVPAG-------EVRSPIDIDGHGTHTSSTVAGVLVA 224
Query: 231 NANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290
NA+ +G A GTA G P AR+AMYK+ + A +D+LAG + AI DGV+++S+S+G
Sbjct: 225 NASLYGIANGTARGAVPSARLAMYKVCWARS--GCADMDILAGFEAAIHDGVEIISISIG 282
Query: 291 FPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAA 350
P + + I++G+F A++KGI SAGN GP ++ N PWI TV A +DR F +
Sbjct: 283 GPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKS 342
Query: 351 RVTLGN-EELSVIGKSVYPENLFVSREPIYFGYGNRSK-------EICEGNSTDPRAVAG 402
++ LGN + S +G S++ P+ G C +S D + V G
Sbjct: 343 KIDLGNGKSFSGMGISMFSPK--AKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKG 400
Query: 403 KYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGD-FDMPFVTVNLNNGEL 461
K + C G + ++ AGAII +D Q L F P +VN + G++
Sbjct: 401 KVMVCRMGGGGVEST------IKSYGGAGAIIVSD--QYLDNAQIFMAPATSVNSSVGDI 452
Query: 462 VKKYIINADNATVSIK--FQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDIL 519
+ +YI + +A+ I+ Q+TI P+P VA FSSRGP+ S +LKPDI APG+DIL
Sbjct: 453 IYRYINSTRSASAVIQKTRQVTI----PAPFVASFSSRGPNPGSIRLLKPDIAAPGIDIL 508
Query: 520 GAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMT 579
A+ R + + D +++ + SGTSM+CPH AG+A +K+ H +W+ AAI+SA++T
Sbjct: 509 AAFTLKRSLTGL-DGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIIT 567
Query: 580 TADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYT 639
+A + + A+ + +G G INP +A PGLVYD++ Y+ +LC Y
Sbjct: 568 SAKPISRRVNKDAEFA---------YGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYN 618
Query: 640 SQQIRVLTGTSNFTCEH-----GNLDLNYPSFIIILNNTNTASF-TFKRVLTNVAVTRSV 693
+ + L GT + +C G+ LNYP+ + L + T++ F+R +TNV SV
Sbjct: 619 ATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSV 678
Query: 694 YTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFE 753
YTA V+AP G+ + V+P +LSF + K F + V ++P + G L W
Sbjct: 679 YTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVK---AKQMTPGKIV---SGLLVW-- 730
Query: 754 VNGKHQVRSPIV 765
+ +H VRSPIV
Sbjct: 731 KSPRHSVRSPIV 742
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 138/515 (26%), Positives = 225/515 (43%), Gaps = 93/515 (18%)
Query: 109 HLHTTHTPKFVGLKKHAGLWPAAGFGSDVI----VGVIDSGVWPESPSFKDDGMPPV--P 162
L PK + +K ++P + +D + V + + V P+ DD P +
Sbjct: 116 KLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQ----MDDSAPYIGAN 171
Query: 163 ERWR----------GACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPR- 211
+ W + GVE+N + + ++ Y K + T D PR
Sbjct: 172 DAWDLGYTGKGIKVAIIDTGVEYNHPDLKKNFGQYKGYDFVDNDYDPKETPTGD---PRG 228
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
+ HGTH + T+A A GT GVAP A + Y++ + +V+
Sbjct: 229 EATDHGTHVAGTVA------------ANGTIKGVAPDATLLAYRVLGPGGS--GTTENVI 274
Query: 272 AGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFA---ALKKGIFVACSAGNSGPRPYS 328
AG+++A+ DG DVM+LSLG NP + A A+ +G+ S GNSGP
Sbjct: 275 AGVERAVQDGADVMNLSLG----NSLNNPDWATSTALDWAMSEGVVAVTSNGNSGP---- 326
Query: 329 IENGAPWITTVGAGTVDREF----AARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGN 384
NG W TVG+ RE A ++ L NE G + + ++E N
Sbjct: 327 --NG--W--TVGSPGTSREAISVGATQLPL-NEYAVTFGSYSSAKVMGYNKEDDVKALNN 379
Query: 385 RSKEICEGNSTDPRAVAGKYIF--CAFDYKGNITVSQQLEEVRRTRAAGAII----SADS 438
+ E+ E + + GK + A +G+I + + ++ A G ++ S +
Sbjct: 380 KEVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEI 439
Query: 439 RQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITI---LGTKPSPQVAKFS 495
N+ PG +P + ++L +GE + + + T F++T+ LG QVA FS
Sbjct: 440 EANV-PG-MSVPTIKLSLEDGEKLVSALKAGETKTT---FKLTVSKALGE----QVADFS 490
Query: 496 SRGPSLRSPWILKPDILAPGVDILGAWV---PNRPIATIRDIGKLLTEYALESGTSMSCP 552
SRGP + + W++KPDI APGV+I+ P+ P Y + GTSM+ P
Sbjct: 491 SRGPVMDT-WMIKPDISAPGVNIVSTIPTHDPDHPYG-----------YGSKQGTSMASP 538
Query: 553 HAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNA 587
H AG ++K +WS I++A+M TA L ++
Sbjct: 539 HIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDS 573
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 129/536 (24%), Positives = 203/536 (37%), Gaps = 116/536 (21%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L AG G+ +V VID+G E WR + + +
Sbjct: 114 LQEKAGKGAGTVVAVIDAGFDKNH------------EAWRLTDKTKARYQSKE------- 154
Query: 187 ARSFNKGLKQYGL--------KISTTFDYDSPRDFF---GHGTHTSSTIAGSRVQNANYF 235
K K++G+ K++ DY HGTH S ++G NA
Sbjct: 155 --DLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSG----NAPSE 208
Query: 236 GYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD----VMSLSLGF 291
G P A++ + ++ N D QAI D V+ V+++S G
Sbjct: 209 TKEPYRLEGAMPEAQLLLMRVEIVN-----GLADYARNYAQAIRDAVNLGAKVINMSFGN 263
Query: 292 PETTF----DENPIAIGAFAALKKGIFVACSAGNS----GPRPYSIEN-------GAPWI 336
+ DE A A KG+ + SAGN G + + G P
Sbjct: 264 AALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAA 321
Query: 337 T----TVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEG 392
TV + + D++ T+ + V N F + + Y NR +
Sbjct: 322 ADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMK---- 377
Query: 393 NSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDF----D 448
D + V GK A +G+I ++ ++ A G +I D++ FP +
Sbjct: 378 -EDDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGVLI-YDNQDKGFPIELPNVDQ 432
Query: 449 MPFVTVNLNNGELVKKYIINADNATVSIKFQIT--ILGTKPSPQVAKFSSRGPSLRSPWI 506
MP ++ +G L+K +N +I F T +L T ++++FSS G L +
Sbjct: 433 MPAAFISRKDGLLLK------ENPQKTITFNATPKVLPTASGTKLSRFSSWG--LTADGN 484
Query: 507 LKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH 566
+KPDI APG DIL + N+ YA SGTSMS P AGI LL+ +
Sbjct: 485 IKPDIAAPGQDILSSVANNK--------------YAKLSGTSMSAPLVAGIMGLLQKQYE 530
Query: 567 EWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG-------TPLDFGAGHINPNKA 615
I+ MT ++ LD A ++ +T + +P GAG ++ KA
Sbjct: 531 ------IQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 130/537 (24%), Positives = 204/537 (37%), Gaps = 118/537 (21%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L AG G+ +V VID+G E WR + + +
Sbjct: 116 LQEKAGKGAGTVVAVIDAGFDKNH------------EAWRLTDKSKARYQSKE------- 156
Query: 187 ARSFNKGLKQYGL--------KISTTFDYDSPRDFF---GHGTHTSSTIAGSRVQNANYF 235
K K +G+ K++ DY HGTH S ++G+
Sbjct: 157 --DLEKAKKDHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEP 214
Query: 236 GYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD----VMSLSLGF 291
EG P A++ + ++ N D QAI D V+ V+++S G
Sbjct: 215 YRLEG----AMPEAQLLLMRVEIVN-----GLADYARNYAQAIRDAVNLGAKVINMSFGN 265
Query: 292 PETTF----DENPIAIGAFAALKKGIFVACSAGNS----GPRPYSIEN-------GAPWI 336
+ DE A A KG+ + SAGN G + + G P
Sbjct: 266 AALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAA 323
Query: 337 T----TVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNR-SKEICE 391
TV + + D++ T+ + V N F + + Y NR +KE
Sbjct: 324 ADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKE--- 380
Query: 392 GNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDF---- 447
D + V GK A +G+I ++ ++ A G +I D++ FP +
Sbjct: 381 ---DDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGVLI-YDNQDKGFPIELPNVD 433
Query: 448 DMPFVTVNLNNGELVKKYIINADNATVSIKFQIT--ILGTKPSPQVAKFSSRGPSLRSPW 505
MP ++ +G L+K DN+ +I F T +L T ++++FSS G L +
Sbjct: 434 QMPAAFISRKDGLLLK------DNSKKTITFNATPKVLPTASGTKLSRFSSWG--LTADG 485
Query: 506 ILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATH 565
+KPDI APG DIL + N+ YA SGTSMS P AGI LL+ +
Sbjct: 486 NIKPDIAAPGQDILSSVANNK--------------YAKLSGTSMSAPLVAGIMGLLQKQY 531
Query: 566 HEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG-------TPLDFGAGHINPNKA 615
+ MT ++ LD A ++ +T + +P GAG ++ KA
Sbjct: 532 E------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 130/537 (24%), Positives = 204/537 (37%), Gaps = 118/537 (21%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L AG G+ +V VID+G E WR + + +
Sbjct: 116 LQEKAGKGAGTVVAVIDAGFDKNH------------EAWRLTDKSKARYQSKE------- 156
Query: 187 ARSFNKGLKQYGL--------KISTTFDYDSPRDFF---GHGTHTSSTIAGSRVQNANYF 235
K K +G+ K++ DY HGTH S ++G+
Sbjct: 157 --DLEKAKKDHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEP 214
Query: 236 GYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD----VMSLSLGF 291
EG P A++ + ++ N D QAI D V+ V+++S G
Sbjct: 215 YRLEG----AMPEAQLLLMRVEIVN-----GLADYARNYAQAIRDAVNLGAKVINMSFGN 265
Query: 292 PETTF----DENPIAIGAFAALKKGIFVACSAGNS----GPRPYSIEN-------GAPWI 336
+ DE A A KG+ + SAGN G + + G P
Sbjct: 266 AALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAA 323
Query: 337 T----TVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNR-SKEICE 391
TV + + D++ T+ + V N F + + Y NR +KE
Sbjct: 324 ADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKE--- 380
Query: 392 GNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDF---- 447
D + V GK A +G+I ++ ++ A G +I D++ FP +
Sbjct: 381 ---DDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGVLI-YDNQDKGFPIELPNVD 433
Query: 448 DMPFVTVNLNNGELVKKYIINADNATVSIKFQIT--ILGTKPSPQVAKFSSRGPSLRSPW 505
MP ++ +G L+K DN+ +I F T +L T ++++FSS G L +
Sbjct: 434 QMPAAFISRKDGLLLK------DNSKKTITFNATPKVLPTASGTKLSRFSSWG--LTADG 485
Query: 506 ILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATH 565
+KPDI APG DIL + N+ YA SGTSMS P AGI LL+ +
Sbjct: 486 NIKPDIAAPGQDILSSVANNK--------------YAKLSGTSMSAPLVAGIMGLLQKQY 531
Query: 566 HEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG-------TPLDFGAGHINPNKA 615
+ MT ++ LD A ++ +T + +P GAG ++ KA
Sbjct: 532 E------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 127/536 (23%), Positives = 202/536 (37%), Gaps = 116/536 (21%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L AG G+ +V VID+G E WR + + +
Sbjct: 114 LQEKAGKGAGTVVAVIDAGFDKNH------------EAWRLTDKTKARYQSKE------- 154
Query: 187 ARSFNKGLKQYGL--------KISTTFDYDSPRDFF---GHGTHTSSTIAGSRVQNANYF 235
K K++G+ K++ DY HGTH S ++G+
Sbjct: 155 --DLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEP 212
Query: 236 GYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD----VMSLSLGF 291
EG P A++ + ++ N D QAI D V+ V+++S G
Sbjct: 213 YRLEG----AMPEAQLLLMRVEIVN-----GLADYARNYAQAIRDAVNLGAKVINMSFGN 263
Query: 292 PETTF----DENPIAIGAFAALKKGIFVACSAGNS----GPRPYSIEN-------GAPWI 336
+ DE A A KG+ + SAGN G + + G P
Sbjct: 264 AALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAA 321
Query: 337 T----TVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEG 392
TV + + D++ + ++ V N F + + Y NR +
Sbjct: 322 ADSTLTVASYSPDKQLTETAMVKTDDQQDKEMPVLSTNRFEPNKAYDYAYANRGMK---- 377
Query: 393 NSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDF----D 448
D + V GK A +G+I ++ ++ A G +I D++ FP +
Sbjct: 378 -EDDFKDVKGK---IALIERGDIDFKDKVANAKKAGAVGVLI-YDNQDKGFPIELPNVDQ 432
Query: 449 MPFVTVNLNNGELVKKYIINADNATVSIKFQIT--ILGTKPSPQVAKFSSRGPSLRSPWI 506
MP ++ +G L+K DN +I F T +L T ++++FSS G L +
Sbjct: 433 MPAAFISRKDGLLLK------DNPQKTITFNATPKVLPTASGTKLSRFSSWG--LTADGN 484
Query: 507 LKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH 566
+KPDI APG DIL + N+ YA SGTSMS P AGI LL+ +
Sbjct: 485 IKPDIAAPGQDILSSVANNK--------------YAKLSGTSMSAPLVAGIMGLLQKQYE 530
Query: 567 EWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG-------TPLDFGAGHINPNKA 615
+ MT ++ LD A ++ +T + +P GAG ++ KA
Sbjct: 531 ------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 128/536 (23%), Positives = 202/536 (37%), Gaps = 116/536 (21%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L AG G+ +V VID+G E WR + + +
Sbjct: 114 LQEKAGKGAGTVVAVIDAGFDKNH------------EAWRLTDKTKARYQSKE------- 154
Query: 187 ARSFNKGLKQYGL--------KISTTFDYDSPRDFF---GHGTHTSSTIAGSRVQNANYF 235
K K++G+ KI+ DY HGTH S ++G+
Sbjct: 155 --DLEKAKKEHGITYGEWVNDKIAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEP 212
Query: 236 GYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD----VMSLSLGF 291
EG P A++ + ++ N D QAI D V+ V+++S G
Sbjct: 213 YRLEG----AMPEAQLLLMRVEIVN-----GLADYARNYAQAIRDAVNLGAKVINMSFGN 263
Query: 292 PETTF----DENPIAIGAFAALKKGIFVACSAGNS----GPRPYSIEN-------GAPWI 336
+ DE A A KG+ + SAGN G + + G P
Sbjct: 264 AALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAA 321
Query: 337 T----TVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEG 392
TV + + D++ T+ + V N F + + Y NR +
Sbjct: 322 ADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMK---- 377
Query: 393 NSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDF----D 448
D + V GK A +G+I ++ ++ A G +I D++ FP +
Sbjct: 378 -EDDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGVLI-YDNQDKGFPIELPNVDQ 432
Query: 449 MPFVTVNLNNGELVKKYIINADNATVSIKFQIT--ILGTKPSPQVAKFSSRGPSLRSPWI 506
MP ++ +G L+K +N +I F T +L T ++++FSS G L +
Sbjct: 433 MPAAFISRKDGLLLK------ENPQKTITFNATPKVLPTASGTKLSRFSSWG--LTADGN 484
Query: 507 LKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH 566
+KPDI APG DIL + N+ YA SGTSMS P AGI LL+ +
Sbjct: 485 IKPDIAAPGQDILSSVANNK--------------YAKLSGTSMSAPLVAGIMGLLQKQYE 530
Query: 567 EWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG-------TPLDFGAGHINPNKA 615
+ MT ++ LD A ++ +T + +P GAG ++ KA
Sbjct: 531 ------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 774 | ||||||
| 147795297 | 766 | hypothetical protein VITISV_001779 [Viti | 0.961 | 0.971 | 0.672 | 0.0 | |
| 359475365 | 849 | PREDICTED: subtilisin-like protease-like | 0.961 | 0.876 | 0.674 | 0.0 | |
| 225428832 | 769 | PREDICTED: subtilisin-like protease-like | 0.983 | 0.989 | 0.656 | 0.0 | |
| 147795298 | 769 | hypothetical protein VITISV_001780 [Viti | 0.983 | 0.989 | 0.652 | 0.0 | |
| 359475363 | 761 | PREDICTED: subtilisin-like protease-like | 0.965 | 0.981 | 0.668 | 0.0 | |
| 224105567 | 758 | predicted protein [Populus trichocarpa] | 0.967 | 0.988 | 0.649 | 0.0 | |
| 255555427 | 778 | Xylem serine proteinase 1 precursor, put | 0.985 | 0.980 | 0.655 | 0.0 | |
| 147801126 | 765 | hypothetical protein VITISV_029978 [Viti | 0.962 | 0.973 | 0.652 | 0.0 | |
| 225428838 | 765 | PREDICTED: subtilisin-like protease [Vit | 0.962 | 0.973 | 0.651 | 0.0 | |
| 297741264 | 687 | unnamed protein product [Vitis vinifera] | 0.859 | 0.967 | 0.593 | 0.0 |
| >gi|147795297|emb|CAN64995.1| hypothetical protein VITISV_001779 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/750 (67%), Positives = 603/750 (80%), Gaps = 6/750 (0%)
Query: 20 SATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVD 79
+ T++ M D +TYIVHMDK+AMP PFS+HH WY+STLSS SPDG PTHLYTYNHV+D
Sbjct: 18 TVTTSSMSEDIRTYIVHMDKSAMPIPFSSHHDWYLSTLSSFYSPDGILPTHLYTYNHVLD 77
Query: 80 GFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHAGLWPAAGFGSDVIV 139
GFSAVLSQ+HL L+KMPGH TY ETFG +HTTHTPKF+GL+ + G WP FG D+++
Sbjct: 78 GFSAVLSQSHLDQLEKMPGHLATYPETFGTIHTTHTPKFLGLENNFGSWPGGNFGEDMVI 137
Query: 140 GVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL 199
G++D+G+WPES SF+D GM PVP+RWRGACE G EFN+S CNRKLIGARSF+K LKQ GL
Sbjct: 138 GILDTGIWPESESFQDKGMAPVPDRWRGACESGAEFNSSLCNRKLIGARSFSKALKQRGL 197
Query: 200 KISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFY 259
IST DYDSPRDF+GHGTHTSST AGS V +ANYFGYA+GTA G+AP AR+AMYK+ FY
Sbjct: 198 NISTPDDYDSPRDFYGHGTHTSSTAAGSPVADANYFGYAKGTATGIAPKARLAMYKVLFY 257
Query: 260 NDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSA 319
NDT ++AA D LAG+DQAIADGVD+MSLSLGF ETTF+ENPIA+GAFAA++KGIFV+CSA
Sbjct: 258 NDTYESAASDTLAGIDQAIADGVDLMSLSLGFSETTFEENPIAVGAFAAMEKGIFVSCSA 317
Query: 320 GNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIY 379
GNSGP Y+I NGAPWITT+GAGT+DR++AA V+LGN L++ GKSVYP++L +S+ P+Y
Sbjct: 318 GNSGPHGYTIFNGAPWITTIGAGTIDRDYAADVSLGNGILNIRGKSVYPDDLLISQVPLY 377
Query: 380 FGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR 439
FG+GNRSKE+CE N+ D + AGK +FC F G I Q +E+ R AAGAI S DS
Sbjct: 378 FGHGNRSKELCEDNAIDQKDAAGKIVFCDFSESGGI----QSDEMERVGAAGAIFSTDSG 433
Query: 440 QNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGP 499
L P DF MPFV V+ +G+LVK YII ++N V IKFQIT+LG KP+P VA FSSRGP
Sbjct: 434 IFLSPSDFYMPFVAVSPKDGDLVKDYIIKSENPVVDIKFQITVLGAKPAPMVAWFSSRGP 493
Query: 500 SLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIAT 559
S R+P ILKPDILAPGVDIL AW PNR I I D LLT+YAL SGTSM+ PHA G+A
Sbjct: 494 SRRAPMILKPDILAPGVDILAAWAPNRGITPIGD-DYLLTDYALLSGTSMASPHAVGVAA 552
Query: 560 LLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPG 619
LLK+ H +WS AA+RSAMMTTA +LDN I D++TGV+GTPLDFGAGHINPN AMDPG
Sbjct: 553 LLKSAHPDWSPAAVRSAMMTTAYLLDNTQGPIMDMTTGVSGTPLDFGAGHINPNMAMDPG 612
Query: 620 LVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPSFIIILNNTNTASFT 679
LVYDIE QDYIN+LC LNYTS+QI+++T S F+C+ NLDLNYPSF+++LNNTNT S+T
Sbjct: 613 LVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYT 672
Query: 680 FKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPK 739
FKRVLTNV T SVY A VK P+GM V V P T+SF ++SKAEFN+TV INLG D P+
Sbjct: 673 FKRVLTNVENTYSVYQASVKQPSGMKVTVLPSTVSFTGRYSKAEFNMTVEINLG-DARPQ 731
Query: 740 RNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
+Y+GNFGYLTW+E NG H V SPIVSA +
Sbjct: 732 SDYIGNFGYLTWWEANGTHVVSSPIVSAIA 761
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475365|ref|XP_002282292.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/750 (67%), Positives = 602/750 (80%), Gaps = 6/750 (0%)
Query: 20 SATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVD 79
+ T++ M D +TYIVHMDK+AMP PFS+HH WY+STLSS SPDG PTHLYTYNHV+D
Sbjct: 101 TVTTSSMSEDIRTYIVHMDKSAMPIPFSSHHDWYLSTLSSFYSPDGILPTHLYTYNHVLD 160
Query: 80 GFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHAGLWPAAGFGSDVIV 139
GFSAVLSQ+HL L+KM GH TY ETFG +HTTHTPKF+GL+ + G WP FG D+++
Sbjct: 161 GFSAVLSQSHLDQLEKMSGHLATYPETFGTIHTTHTPKFLGLENNFGSWPGGNFGEDMVI 220
Query: 140 GVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL 199
G++D+G+WPES SF+D GM PVP+RWRGACE GVEFN+S CNRKLIGARSF+K LKQ GL
Sbjct: 221 GILDTGIWPESESFQDKGMAPVPDRWRGACESGVEFNSSLCNRKLIGARSFSKALKQRGL 280
Query: 200 KISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFY 259
IST DYDSPRDF+GHGTHTSST AGS V +ANYFGYA+GTA G+AP AR+AMYK+ FY
Sbjct: 281 NISTPDDYDSPRDFYGHGTHTSSTAAGSPVADANYFGYAKGTATGIAPKARLAMYKVLFY 340
Query: 260 NDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSA 319
NDT ++AA D LAG+DQAIADGVD+MSLSLGF ETTF+ENPIA+GAFAA++KGIFV+CSA
Sbjct: 341 NDTYESAASDTLAGIDQAIADGVDLMSLSLGFSETTFEENPIAVGAFAAMEKGIFVSCSA 400
Query: 320 GNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIY 379
GNSGP Y+I NGAPWITT+GAGT+D ++AA V+LGN L++ GKSVYPE+L +S+ P+Y
Sbjct: 401 GNSGPHGYTIFNGAPWITTIGAGTIDLDYAADVSLGNGILNIRGKSVYPEDLLISQVPLY 460
Query: 380 FGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR 439
FG+GNRSKE+CE N+ DP+ AGK +FC F G I Q +E+ R AAGAI S DS
Sbjct: 461 FGHGNRSKELCEDNAIDPKDAAGKIVFCDFSESGGI----QSDEMERVGAAGAIFSTDSG 516
Query: 440 QNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGP 499
L P DF MPFV V+ +G+LVK YII ++N V IKFQIT+LG KP+P VA FSSRGP
Sbjct: 517 IFLSPSDFYMPFVAVSPKDGDLVKDYIIKSENPVVDIKFQITVLGAKPAPMVAWFSSRGP 576
Query: 500 SLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIAT 559
S R+P ILKPDILAPGVDIL AW NR I I D LLT YAL SGTSM+ PHA G+A
Sbjct: 577 SRRAPMILKPDILAPGVDILAAWASNRGITPIGDY-YLLTNYALLSGTSMASPHAVGVAA 635
Query: 560 LLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPG 619
LLK+ H +WS AA+RSAMMTTA +LDN I D++TGVAGTPLDFGAGHINPN AMDPG
Sbjct: 636 LLKSAHPDWSPAAVRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINPNMAMDPG 695
Query: 620 LVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPSFIIILNNTNTASFT 679
LVYDIE QDYIN+LC LNYTS+QI+++T S F+C+ NLDLNYPSF+++LNNTNT S+T
Sbjct: 696 LVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYT 755
Query: 680 FKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPK 739
FKRVLTNV T SVY A VK P+GM V+VQP +SF K+SKAEFN+TV INLG D P+
Sbjct: 756 FKRVLTNVENTHSVYHASVKLPSGMKVSVQPSVVSFAGKYSKAEFNMTVEINLG-DARPQ 814
Query: 740 RNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
+Y+GNFGYLTW+E NG H V SPIVSA +
Sbjct: 815 SDYIGNFGYLTWWEANGTHVVSSPIVSAIA 844
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428832|ref|XP_002282297.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/772 (65%), Positives = 609/772 (78%), Gaps = 11/772 (1%)
Query: 1 MGSFTGFILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSL 60
M FT I +L +L + + + S M GD +YI+HMDK+AMP FS+HH WYMSTLSS+
Sbjct: 1 MECFT--ISKLLFLLLVPVISISTCMAGDVGSYIIHMDKSAMPMTFSSHHDWYMSTLSSI 58
Query: 61 SSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVG 120
SSPDG PTHLYTYNHV+DGFSAVLS+ HL L+KMPGH TY ++FG LHTTH+PKF+G
Sbjct: 59 SSPDGSLPTHLYTYNHVLDGFSAVLSKAHLDQLEKMPGHLATYPDSFGKLHTTHSPKFLG 118
Query: 121 LKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHC 180
L+K++G WP FG D+I+G++D+GVWPES SF+D GM PVP+RWRGACE GV FN+S+C
Sbjct: 119 LEKNSGAWPEGKFGEDMIIGILDTGVWPESESFRDKGMGPVPKRWRGACESGVAFNSSYC 178
Query: 181 NRKLIGARSFNKGLKQYGLKISTT-FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAE 239
NRKLIGARSF++GLK+ GL +S DYDSPRDF GHGTHTSST AGS V+ ANYFGYAE
Sbjct: 179 NRKLIGARSFSEGLKRRGLNVSAPPDDYDSPRDFHGHGTHTSSTAAGSPVRGANYFGYAE 238
Query: 240 GTAIGVAPMARIAMYKIAFYNDTLK--AAAVDVLAGMDQAIADGVDVMSLSLGFPETTFD 297
GTAIG++P AR+AMYK+ F +D AAA D LAGMDQAIADGVD+MSLSLGF ETTF+
Sbjct: 239 GTAIGISPKARLAMYKVIFLSDLTDGDAAASDTLAGMDQAIADGVDLMSLSLGFEETTFE 298
Query: 298 ENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNE 357
+NPIA+GAF+A++KGIFV+CSAGNSGP Y++ NGAPWITT+GAGT+DR++AA V LGN
Sbjct: 299 QNPIAVGAFSAMEKGIFVSCSAGNSGPDAYTMFNGAPWITTIGAGTIDRDYAADVKLGNG 358
Query: 358 ELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITV 417
L+V GKSVYPENL +S +YFGYGNRSKE+CE + DP VAGK +FC G I
Sbjct: 359 ILTVRGKSVYPENLLISNVSLYFGYGNRSKELCEYGALDPEDVAGKIVFCDIPESGGI-- 416
Query: 418 SQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIK 477
Q EV AAGAI S+DS+ + +P DFDMP+V V+ +G+LVK YII + N V IK
Sbjct: 417 --QSYEVGGVEAAGAIFSSDSQNSFWPSDFDMPYVAVSPKDGDLVKDYIIKSQNPVVDIK 474
Query: 478 FQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKL 537
FQIT+LG KP+PQVA+FSSRGP R+P ILKPD+LAPGV IL AW PNR I IRD L
Sbjct: 475 FQITVLGAKPAPQVAEFSSRGPGSRAPMILKPDVLAPGVHILAAWAPNRAIQPIRD-EYL 533
Query: 538 LTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTG 597
L++Y L SGTSM+ PHA G+A LLKA H +WS AAIRSAMMTTA +LDN I D++TG
Sbjct: 534 LSDYGLLSGTSMASPHAVGVAALLKAAHPDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTG 593
Query: 598 VAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHG 657
VAGTPLDFGAGHINPN AMDPGLVYDIE QDYIN+LC LNYTS+QI+++T S F+C+
Sbjct: 594 VAGTPLDFGAGHINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQA 653
Query: 658 NLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDE 717
NLDLNYPSF+++LNNTNT S+TFKRVLTNV T SVY A VK P+GM V V P T+SF
Sbjct: 654 NLDLNYPSFMVLLNNTNTTSYTFKRVLTNVEDTYSVYQASVKQPSGMKVTVLPSTVSFTG 713
Query: 718 KHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
++SKAEFN+TV INLG D P+ +Y+GN+GYLTW EVNG H VRSPIVSA +
Sbjct: 714 RYSKAEFNMTVEINLG-DAGPQSDYIGNYGYLTWREVNGTHVVRSPIVSAIA 764
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795298|emb|CAN64996.1| hypothetical protein VITISV_001780 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/772 (65%), Positives = 606/772 (78%), Gaps = 11/772 (1%)
Query: 1 MGSFTGFILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSL 60
M FT I +L +L + + + S M GD +YI+HMDK+AMP FS+HH WYMSTLSS+
Sbjct: 1 MECFT--ISELLFLLLVPVISISTCMAGDVGSYIIHMDKSAMPMTFSSHHDWYMSTLSSI 58
Query: 61 SSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVG 120
SSPDG PTHLYTYNHV+DGFSAV+S+ HL L+KMPGH TY ++FG LHTTH+PKF+G
Sbjct: 59 SSPDGSLPTHLYTYNHVLDGFSAVMSKAHLDQLEKMPGHLATYPDSFGKLHTTHSPKFLG 118
Query: 121 LKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHC 180
L+K++G WP FG D+I+ ++D+GVWPES SF+D GM PVP+RWRGACE GVEF +S+C
Sbjct: 119 LEKNSGAWPEGKFGEDMIIAILDTGVWPESESFRDKGMGPVPKRWRGACESGVEFKSSYC 178
Query: 181 NRKLIGARSFNKGLKQYGLKISTT-FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAE 239
NRKLIGARSF++GLK+ GL +S DYDSPRDF GHGTHTSST AGS V+ ANYFGYAE
Sbjct: 179 NRKLIGARSFSEGLKRRGLNVSAPPDDYDSPRDFHGHGTHTSSTAAGSPVRGANYFGYAE 238
Query: 240 GTAIGVAPMARIAMYKIAFYND--TLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFD 297
GTAIG++P AR+AMYK+ F +D AAA D LAGMDQAIADGVD+MSLSLGF ETTF+
Sbjct: 239 GTAIGISPKARLAMYKVIFLSDLRDADAAASDTLAGMDQAIADGVDLMSLSLGFEETTFE 298
Query: 298 ENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNE 357
+NPIA+GAF+A++KGIFV+CSAGNSGP Y++ NGAPWITT+GAGT+DR++AA V LGN
Sbjct: 299 QNPIALGAFSAMEKGIFVSCSAGNSGPDAYTMFNGAPWITTIGAGTIDRDYAADVKLGNG 358
Query: 358 ELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITV 417
+V GKSVYPENL +S +YFGYGNRSKE+CE + DP VAGK +FC G I
Sbjct: 359 IFTVRGKSVYPENLLISNVSLYFGYGNRSKELCEYGALDPEDVAGKIVFCDIPESGGI-- 416
Query: 418 SQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIK 477
Q EV AAGAI S+DS+ + +P DFDMP+V V+ +G+LVK YII + N V IK
Sbjct: 417 --QSYEVGGVEAAGAIFSSDSQNSFWPSDFDMPYVAVSPKDGDLVKDYIIKSQNPVVDIK 474
Query: 478 FQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKL 537
FQIT+LG KP+PQVA+FSSRGP R+P ILKPD+LAPGV IL AW PNR I IRD L
Sbjct: 475 FQITVLGAKPAPQVAEFSSRGPGSRAPMILKPDVLAPGVHILAAWAPNRAIQPIRD-EYL 533
Query: 538 LTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTG 597
L++Y L SGTSM+ PHA G+A LLKA H +WS AAIRSAMMTTA +LDN I D++TG
Sbjct: 534 LSDYGLLSGTSMASPHAVGVAALLKAAHPDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTG 593
Query: 598 VAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHG 657
VAGTPLDFGAGHINPN AMDPGLVYDIE QDYIN+LC LNYTS+QI+++T S F+C+
Sbjct: 594 VAGTPLDFGAGHINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQA 653
Query: 658 NLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDE 717
NLDLNYPSF+++LNNTNT S+TFKRVLTNV T SVY A VK P+GM V V P T+SF
Sbjct: 654 NLDLNYPSFMVLLNNTNTTSYTFKRVLTNVENTYSVYQASVKQPSGMKVTVLPSTVSFTG 713
Query: 718 KHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
++SKAEFN+TV INLG D P+ +Y+GN GYLTW EVNG H VRSPIVSA +
Sbjct: 714 RYSKAEFNMTVEINLG-DAXPQSDYIGNXGYLTWREVNGTHVVRSPIVSAIA 764
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475363|ref|XP_002282304.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1036 bits (2680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/757 (66%), Positives = 602/757 (79%), Gaps = 10/757 (1%)
Query: 15 LCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTY 74
L + A S + D TYI+HMDK+AMP FS+HH WY STLSS+SSPDG PTHLYTY
Sbjct: 8 LLFLFLALSTSVAEDLGTYIIHMDKSAMPMTFSSHHDWYRSTLSSMSSPDGILPTHLYTY 67
Query: 75 NHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHAGLWPAAGFG 134
NHV+DGFSAVLS+ HL L+KM GH TY ++FG LHTTHTPKF+GL+K G WP FG
Sbjct: 68 NHVLDGFSAVLSRAHLDQLEKMAGHLATYPDSFGKLHTTHTPKFLGLEKKVGSWPKGKFG 127
Query: 135 SDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGL 194
D+I+G++DSG+WPES SFKD GM PVP+RWRGACE GVEFN+S+CNRKLIGARSF+KG+
Sbjct: 128 EDMIIGILDSGIWPESESFKDKGMAPVPDRWRGACESGVEFNSSYCNRKLIGARSFSKGM 187
Query: 195 KQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMY 254
KQ GL IS DYDSPRDF GHGTHTSST AGS V++ANYFGYA+GTA GVAP AR+AMY
Sbjct: 188 KQRGLNISLPDDYDSPRDFLGHGTHTSSTAAGSPVRDANYFGYAKGTATGVAPKARLAMY 247
Query: 255 KIAFYNDTL--KAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKG 312
K+ F++D+ +AAA D LAGMDQAIADGVD+MSLSLGF ETTFDENPIA+GAFAA++KG
Sbjct: 248 KVFFFSDSSDPEAAASDTLAGMDQAIADGVDLMSLSLGFFETTFDENPIAVGAFAAMEKG 307
Query: 313 IFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLF 372
IFV+CSAGN+GP Y+I NGAPWITT+GAGT+DR++AA VTLGN L V GKSVYPE++F
Sbjct: 308 IFVSCSAGNAGPHGYTIFNGAPWITTIGAGTIDRDYAADVTLGNGILRVRGKSVYPEDVF 367
Query: 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432
+S P+YFG+GN SKE C+ N+ +P+ VAGK +FC D+ G Q +E+ R AAGA
Sbjct: 368 ISNVPLYFGHGNASKETCDYNALEPQEVAGKIVFC--DFPGGY----QQDEIERVGAAGA 421
Query: 433 IISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVA 492
I S DS+ L P DF +PFV V+ +G+LVK YII ++N V IKFQ T+LG KP+PQVA
Sbjct: 422 IFSTDSQNFLGPRDFYIPFVAVSHKDGDLVKDYIIKSENPVVDIKFQKTVLGAKPAPQVA 481
Query: 493 KFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCP 552
FSSRGPS R+P ILKPDILAPGVDIL AW PN I I D LLT+YAL SGTSM+ P
Sbjct: 482 WFSSRGPSRRAPMILKPDILAPGVDILAAWAPNIGITPIGD-DYLLTDYALLSGTSMASP 540
Query: 553 HAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINP 612
HA G+A LLK+ H +WS AAIRSAMMTTA +LDN I D++TGVAGTPLDFGAGHINP
Sbjct: 541 HAVGVAALLKSAHPDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINP 600
Query: 613 NKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPSFIIILNN 672
N AMDPGLVYDIE QDYIN+LC LNYTS+QI+++T S F+C+ NLDLNYPSF+++LNN
Sbjct: 601 NMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNN 660
Query: 673 TNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINL 732
TNT S+TFKRVLTNV T +VY A VK P+GM V+VQP +SF K+SKAEFN+TV INL
Sbjct: 661 TNTTSYTFKRVLTNVENTHTVYHASVKQPSGMKVSVQPSIVSFAGKYSKAEFNMTVEINL 720
Query: 733 GNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
G D P+ +Y+GNFGYLTW+E NG H V SPIVSA +
Sbjct: 721 G-DARPQSDYIGNFGYLTWWEANGTHVVSSPIVSAIA 756
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105567|ref|XP_002313857.1| predicted protein [Populus trichocarpa] gi|222850265|gb|EEE87812.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1027 bits (2655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/774 (64%), Positives = 599/774 (77%), Gaps = 25/774 (3%)
Query: 1 MGSFTGFILMILSILCLVLSATSAY-MPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSS 59
MG FT L+ LCL+ +++ DRKTYI+HMDK MP+ FST H WY+STLSS
Sbjct: 1 MGHFTPPKLLF--ALCLLFPIAASFSTSNDRKTYIIHMDKTGMPSTFSTQHDWYVSTLSS 58
Query: 60 LSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFV 119
LSSPD P HLY+Y HV+DGFSAVLSQTHL L+ +PGH T+ E+ GHLHTTHTPKF+
Sbjct: 59 LSSPDDIPPIHLYSYKHVMDGFSAVLSQTHLDQLESLPGHVATFPESIGHLHTTHTPKFL 118
Query: 120 GLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASH 179
GL K AG WPA FG DVI+GV+D+G+WPES SF D MPPVP+RWRG CE G EFN SH
Sbjct: 119 GLNKRAGAWPAGKFGDDVIIGVLDTGIWPESESFNDKNMPPVPQRWRGICETGTEFNTSH 178
Query: 180 CNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAE 239
CN+KLIGAR F++G+KQ GL IS+T DYDSPRD+ GHG+HTSST GS VQ+A+YFGYA+
Sbjct: 179 CNKKLIGARKFSQGMKQVGLNISSTDDYDSPRDYMGHGSHTSSTAGGSPVQHADYFGYAK 238
Query: 240 GTAIGVAPMARIAMYKIAFYN---DTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTF 296
GTA G+AP+ARIAMYK+ FY+ D AAA D LAGMDQAI DGVD+MSLSLGF ET F
Sbjct: 239 GTATGMAPLARIAMYKVIFYSGDSDGYDAAATDTLAGMDQAIEDGVDIMSLSLGFFETPF 298
Query: 297 DENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGN 356
ENPIAIGAFAALKKGIFV CSAGNSGP Y++ NGAPW+TT+GAGT+DR+F A VTLGN
Sbjct: 299 YENPIAIGAFAALKKGIFVTCSAGNSGPHGYTMFNGAPWLTTIGAGTIDRQFGAEVTLGN 358
Query: 357 EELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNIT 416
+ V G S+YPENLF+SR P+YFG GNRSKE+C+ NS DP+ VAGK++F
Sbjct: 359 GSIIVTGTSIYPENLFISRVPVYFGLGNRSKEVCDWNSLDPKDVAGKFLFYI-------- 410
Query: 417 VSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSI 476
A GAI S D + L P F MPFV V+ +G L+K YI+N NATVS+
Sbjct: 411 ----------AGATGAIFSEDDAEFLHPDYFYMPFVIVSTKDGNLLKNYIMNTTNATVSV 460
Query: 477 KFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGK 536
KF +T+LGTKP+P+VA FSSRGP RSPW LKPDILAPG IL AWVPNR A IR+
Sbjct: 461 KFGLTLLGTKPAPKVAYFSSRGPDRRSPWTLKPDILAPGYHILAAWVPNRGFAPIREDDY 520
Query: 537 LLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADIST 596
LLT+YAL SGTSMSCPH AGIA LLKA H +WS AAIRSA+MTTADV+DNA I D++T
Sbjct: 521 LLTDYALVSGTSMSCPHVAGIAALLKAAHRDWSPAAIRSALMTTADVMDNADGRIIDMTT 580
Query: 597 GVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEH 656
VAGTPLDFGAGH+NPNKAMDPGLVYDI +DYINYLCA+NYTSQQ++++TGTSNFTC++
Sbjct: 581 EVAGTPLDFGAGHVNPNKAMDPGLVYDIVAEDYINYLCAMNYTSQQVQIITGTSNFTCQY 640
Query: 657 GNLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFD 716
+LDLNYPSF+++LNNTNT++ TFKRVLTNVA SVY AV+ AP GM VQP TL F
Sbjct: 641 ASLDLNYPSFLVLLNNTNTSTTTFKRVLTNVADNSSVYRAVISAPQGMKALVQPTTLIFS 700
Query: 717 EKHSKAEFNLTVNINL-GNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
K+SKAEFN+TV I+L V+P+ +Y GN+G+L+W+EVNG+H VRSP+VSA +
Sbjct: 701 GKNSKAEFNMTVEIDLEAASVTPQSDYFGNYGFLSWYEVNGRHVVRSPVVSAIA 754
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555427|ref|XP_002518750.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223542131|gb|EEF43675.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/770 (65%), Positives = 596/770 (77%), Gaps = 7/770 (0%)
Query: 10 MILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPT 69
+L++ L A S RK YI+HMDK+A PA FSTHH WY+STLSSLSS DG +P
Sbjct: 9 FLLTVFLLFTIAKSLPTSNGRKAYIIHMDKSAKPAAFSTHHEWYLSTLSSLSSSDGYSPA 68
Query: 70 HLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHAGLWP 129
HLY+Y HV+DGFSAVLSQ HL L+ +P H T+ E+FGHLHTTHTPKF+GL +H GLWP
Sbjct: 69 HLYSYKHVMDGFSAVLSQDHLDQLESLPSHVATFSESFGHLHTTHTPKFLGLNRHTGLWP 128
Query: 130 AAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARS 189
A+ FG D+I+GV+D+G+WPES SF D MPPVP RW G CE G EFN SHCN+KLIGAR
Sbjct: 129 ASKFGDDIIIGVLDTGIWPESESFNDKNMPPVPNRWLGICETGTEFNTSHCNKKLIGARK 188
Query: 190 FNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMA 249
F++G+K Y L IS T DYDSPRDF GHGTHTSST AGSRVQ+A+YFGYAEG A G+AP A
Sbjct: 189 FSEGMKHYRLNISKTDDYDSPRDFMGHGTHTSSTAAGSRVQHADYFGYAEGRATGIAPSA 248
Query: 250 RIAMYKIAFYN---DTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAF 306
RIAMYK+ FY+ D+ AAA DVLAGMDQAI DGVD+MSLSLGF ET F NPIAIGAF
Sbjct: 249 RIAMYKVLFYSEDIDSYDAAATDVLAGMDQAIEDGVDIMSLSLGFFETPFFGNPIAIGAF 308
Query: 307 AALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSV 366
AALKKGIFVACSAGN GP Y++ NGAPWITTVGAGTVDR+FAA +TLG+ +++ G++
Sbjct: 309 AALKKGIFVACSAGNGGPHGYTMLNGAPWITTVGAGTVDRQFAAHITLGDGIMTLTGQTF 368
Query: 367 YPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEV-- 424
YPENLFVSR PIYFG GNRSKE+C+ NS D + VAGK+IFC D G+ ++ +
Sbjct: 369 YPENLFVSRTPIYFGSGNRSKELCDWNSLDHKDVAGKFIFCDHD-DGSSVFRKETDRYGP 427
Query: 425 RRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILG 484
A G I S D + P F P V V+ +G+L+KKYI+N NATVS++F TILG
Sbjct: 428 DIAGAIGGIFSEDDGEFEHPDYFYQPVVLVSTKDGDLIKKYILNTTNATVSVEFGKTILG 487
Query: 485 TKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALE 544
TKP+P+VA FSSRGP LRSPWILKPDILAPG IL AWVPNR A IRD LLTEYA+
Sbjct: 488 TKPAPKVAYFSSRGPDLRSPWILKPDILAPGYHILAAWVPNRAFAPIRDDDYLLTEYAII 547
Query: 545 SGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLD 604
SGTSMSCPHAAG+A LL+A H +WS AAIRSAMMTTA DNA +I D++TGVAGTPLD
Sbjct: 548 SGTSMSCPHAAGVAALLRAIHRDWSPAAIRSAMMTTAYTKDNADGVIIDMTTGVAGTPLD 607
Query: 605 FGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYP 664
FGAGH++PNKAMDPGLVYDIEV DYINYLCALNYT QQI+ + GTSN+TC++ + DLNYP
Sbjct: 608 FGAGHLDPNKAMDPGLVYDIEVADYINYLCALNYTRQQIQTIIGTSNYTCKYASFDLNYP 667
Query: 665 SFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEF 724
SF++ILN TNT + TFKRVL NVA T SVY+AVV+ P GM VQP T+ F K+SKAEF
Sbjct: 668 SFMVILNKTNTITSTFKRVLMNVADTASVYSAVVETPPGMKAVVQPTTVVFTGKYSKAEF 727
Query: 725 NLTVNINL-GNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFSVSNG 773
NLTV INL ++V+P+ +Y GN+G+L W+EVNG H VRSPIVSA + G
Sbjct: 728 NLTVEINLEADNVTPESDYFGNYGFLWWYEVNGTHVVRSPIVSAIAAGKG 777
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801126|emb|CAN68827.1| hypothetical protein VITISV_029978 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/752 (65%), Positives = 594/752 (78%), Gaps = 7/752 (0%)
Query: 21 ATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDG 80
A SA M D TYI+HMDK+ MP FS+HH WY+S LSS+SS DG PTHLYTYNHV+DG
Sbjct: 19 AMSASMAEDLGTYIIHMDKSTMPMTFSSHHDWYLSMLSSMSSSDGVHPTHLYTYNHVLDG 78
Query: 81 FSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHA-GLWPAAGFGSDVIV 139
FSAVLS+ HL L+KMPG + +TFG HTT +P F+GL K+A G WP FG DVI+
Sbjct: 79 FSAVLSREHLDQLEKMPGFLAIHADTFGRFHTTRSPTFLGLDKNAAGSWPEGKFGEDVII 138
Query: 140 GVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL 199
G+ID+G+WPES SFKD GM PVP+RWRGACE GVEFN+S+CNRKLIGARSF+KGLKQ GL
Sbjct: 139 GIIDTGIWPESESFKDKGMGPVPDRWRGACESGVEFNSSYCNRKLIGARSFSKGLKQQGL 198
Query: 200 KISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFY 259
IST+ DYDSPRDFFGHGTHT+ST AGS V++ANYFGYA+GTAIG+AP AR+A YK+ F
Sbjct: 199 IISTSDDYDSPRDFFGHGTHTASTAAGSPVRDANYFGYAKGTAIGIAPKARLAAYKVLFT 258
Query: 260 NDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSA 319
NDT +AA D LAGMDQAIADGVD+MSLSLGF ETTF++NPIA+GAFAA++KGIFV+CSA
Sbjct: 259 NDTDISAASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIAVGAFAAMEKGIFVSCSA 318
Query: 320 GNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIY 379
GNSGP Y++ NGAPWITT+GAGT+DR++AA VT G L++ G+SVYPEN+ VS +Y
Sbjct: 319 GNSGPEGYTMLNGAPWITTIGAGTIDRDYAADVTFGGGILTIRGRSVYPENVLVSNVSLY 378
Query: 380 FGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR 439
FG+GNRSKE+CE + DP+ VAGK +FC F+ G ++ Q+ EV R A GAIIS+DS
Sbjct: 379 FGHGNRSKELCEDFALDPKDVAGKIVFCYFNQSGGVS---QVREVDRAGAKGAIISSDSE 435
Query: 440 QNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGP 499
FP F +P V V +G+LVK YII ++N V +KF IT+LG+KP+PQVA FSSRGP
Sbjct: 436 FFNFPSFFFIPLVVVTPKDGDLVKDYIIKSENPVVDVKFLITVLGSKPAPQVAFFSSRGP 495
Query: 500 SLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIAT 559
+ R+P ILKPD+LAPGV+IL AW P + + D +LLT+Y L SGTSMS PHA G+A
Sbjct: 496 NNRAPMILKPDVLAPGVNILAAWAPKVALTRVGD-NRLLTDYTLLSGTSMSSPHAVGVAA 554
Query: 560 LLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPG 619
LLK+ H +WSSAAIRSA+MTTA +LDN I D+ TGVA TPLDFGAGHINPN AMDPG
Sbjct: 555 LLKSAHPDWSSAAIRSALMTTAYLLDNTIGSIIDMDTGVAATPLDFGAGHINPNMAMDPG 614
Query: 620 LVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPSFIIIL-NNTNTASF 678
L+YDIEVQDYIN+LC LNYTS+QI++++ S FTC+ NLDLNYPSFI++L NNTNT S+
Sbjct: 615 LIYDIEVQDYINFLCGLNYTSKQIKIISRRSKFTCDQANLDLNYPSFIVLLNNNTNTTSY 674
Query: 679 TFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSP 738
TFKRVLTNV + SVY A VK P+GM V VQP + F K+SKAEFN+TV INLG P
Sbjct: 675 TFKRVLTNVVDSPSVYRASVKQPSGMKVNVQPSMVFFAGKYSKAEFNMTVEINLGY-ARP 733
Query: 739 KRNYLGNFGYLTWFEVNGKHQVRSPIVSAFSV 770
+ Y+GNFGYLTW+EVNG H V+SPIVSAF++
Sbjct: 734 QSEYIGNFGYLTWWEVNGTHVVKSPIVSAFAL 765
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428838|ref|XP_002282333.1| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/752 (65%), Positives = 594/752 (78%), Gaps = 7/752 (0%)
Query: 21 ATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDG 80
A SA M D TYI+HMDK+ MP FS+HH WY+S LSS+SS DG PTHLYTYNHV+DG
Sbjct: 19 AMSASMAEDLGTYIIHMDKSTMPMTFSSHHDWYLSMLSSMSSSDGVHPTHLYTYNHVLDG 78
Query: 81 FSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHA-GLWPAAGFGSDVIV 139
FSAVLS+ HL L+KMPG + +TFG HTT +P F+GL K+A G WP FG DVI+
Sbjct: 79 FSAVLSREHLDQLEKMPGFLAIHADTFGRFHTTRSPTFLGLDKNAAGSWPEGKFGEDVII 138
Query: 140 GVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL 199
G+ID+G+WPES SFKD GM PVP+RWRGACE GVEFN+S+CNRKLIGARSF+KGLKQ GL
Sbjct: 139 GIIDTGIWPESESFKDKGMGPVPDRWRGACESGVEFNSSYCNRKLIGARSFSKGLKQQGL 198
Query: 200 KISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFY 259
IST+ DYDSPRDFFGHGTHT+ST AGS V++ANYFGYA+GTAIG+AP AR+A YK+ F
Sbjct: 199 IISTSDDYDSPRDFFGHGTHTASTAAGSPVRDANYFGYAKGTAIGIAPKARLAAYKVLFT 258
Query: 260 NDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSA 319
ND+ +AA D LAGMDQAIADGVD+MSLSLGF ETTF++NPIA+GAFAA++KGIFV+CSA
Sbjct: 259 NDSDISAASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIAVGAFAAMEKGIFVSCSA 318
Query: 320 GNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIY 379
GNSGP Y++ NGAPWITT+GAGT+DR++AA VT G L++ G+SVYPEN+ VS +Y
Sbjct: 319 GNSGPEGYTMLNGAPWITTIGAGTIDRDYAADVTFGGGILTIRGRSVYPENVLVSNVSLY 378
Query: 380 FGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR 439
FG+GNRSKE+CE + DP+ VAGK +FC F+ G ++ Q+ EV R A GAIIS+DS
Sbjct: 379 FGHGNRSKELCEDFALDPKDVAGKIVFCYFNQSGGVS---QVREVDRAGAKGAIISSDSE 435
Query: 440 QNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGP 499
FP F +P V V +G+LVK YII ++N V +KF IT+LG+KP+PQVA FSSRGP
Sbjct: 436 FFNFPSFFFIPLVVVTPKDGDLVKDYIIKSENPVVDVKFLITVLGSKPAPQVAFFSSRGP 495
Query: 500 SLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIAT 559
+ R+P ILKPD+LAPGV+IL AW P + + D +LLT+Y L SGTSMS PHA G+A
Sbjct: 496 NNRAPMILKPDVLAPGVNILAAWAPKVALTRVGD-NRLLTDYTLLSGTSMSSPHAVGVAA 554
Query: 560 LLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPG 619
LLK+ H +WSSAAIRSA+MTTA +LDN I D+ TGVA TPLDFGAGHINPN AMDPG
Sbjct: 555 LLKSAHPDWSSAAIRSALMTTAYLLDNTIGSIIDMDTGVAATPLDFGAGHINPNMAMDPG 614
Query: 620 LVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPSFIIIL-NNTNTASF 678
L+YDIEVQDYIN+LC LNYTS+QI++++ S FTC+ NLDLNYPSFI++L NNTNT S+
Sbjct: 615 LIYDIEVQDYINFLCGLNYTSKQIKIISRRSKFTCDQANLDLNYPSFIVLLNNNTNTTSY 674
Query: 679 TFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSP 738
TFKRVLTNV + SVY A VK P+GM V VQP + F K+SKAEFN+TV INLG P
Sbjct: 675 TFKRVLTNVVDSPSVYRASVKQPSGMKVNVQPSMVFFAGKYSKAEFNMTVEINLGY-ARP 733
Query: 739 KRNYLGNFGYLTWFEVNGKHQVRSPIVSAFSV 770
+ Y+GNFGYLTW+EVNG H V+SPIVSAF++
Sbjct: 734 QSEYIGNFGYLTWWEVNGTHVVKSPIVSAFAL 765
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741264|emb|CBI32395.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/750 (59%), Positives = 535/750 (71%), Gaps = 85/750 (11%)
Query: 20 SATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVD 79
+ T++ M D +TYIVHMDK+AMP PFS+HH WY+STLSS SPDG PTHLYTYNHV+D
Sbjct: 18 TVTTSSMSEDIRTYIVHMDKSAMPIPFSSHHDWYLSTLSSFYSPDGILPTHLYTYNHVLD 77
Query: 80 GFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHAGLWPAAGFGSDVIV 139
GFSAVLSQ+HL L+KM GH TY ETFG +HTTHTPKF+GL+ + G WP FG D+++
Sbjct: 78 GFSAVLSQSHLDQLEKMSGHLATYPETFGTIHTTHTPKFLGLENNFGSWPGGNFGEDMVI 137
Query: 140 GVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL 199
LKQ GL
Sbjct: 138 A-----------------------------------------------------LKQRGL 144
Query: 200 KISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFY 259
IST DYDSPRDF+GHGTHTSST AGS V +ANYFGYA+GTA G+AP AR+AMYK+ FY
Sbjct: 145 NISTPDDYDSPRDFYGHGTHTSSTAAGSPVADANYFGYAKGTATGIAPKARLAMYKVLFY 204
Query: 260 NDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSA 319
NDT ++AA D LAG+DQAIADGVD+MSLSLGF ETTF+ENPIA+GAFAA++KGIFV+CSA
Sbjct: 205 NDTYESAASDTLAGIDQAIADGVDLMSLSLGFSETTFEENPIAVGAFAAMEKGIFVSCSA 264
Query: 320 GNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIY 379
GNSGP Y+I NGAPWITT+GAGT+D ++AA V+LGN L++ GKSVYPE+L +S+ P+Y
Sbjct: 265 GNSGPHGYTIFNGAPWITTIGAGTIDLDYAADVSLGNGILNIRGKSVYPEDLLISQVPLY 324
Query: 380 FGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR 439
FG+GNRSKE+CE N+ DP+ AGK +FC F G I Q +E+ R AAGAI S DS
Sbjct: 325 FGHGNRSKELCEDNAIDPKDAAGKIVFCDFSESGGI----QSDEMERVGAAGAIFSTDSG 380
Query: 440 QNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGP 499
L P DF MPFV V+ +G+LVK YII ++N V IKFQIT+LG KP+P VA FSSRGP
Sbjct: 381 IFLSPSDFYMPFVAVSPKDGDLVKDYIIKSENPVVDIKFQITVLGAKPAPMVAWFSSRGP 440
Query: 500 SLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIAT 559
S +P +G + LLT YAL SGTSM+ PHA G+A
Sbjct: 441 SRITP--------------IGDYY-------------LLTNYALLSGTSMASPHAVGVAA 473
Query: 560 LLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPG 619
LLK+ H +WS AA+RSAMMTTA +LDN I D++TGVAGTPLDFGAGHINPN AMDPG
Sbjct: 474 LLKSAHPDWSPAAVRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINPNMAMDPG 533
Query: 620 LVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPSFIIILNNTNTASFT 679
LVYDIE QDYIN+LC LNYTS+QI+++T S F+C+ NLDLNYPSF+++LNNTNT S+T
Sbjct: 534 LVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYT 593
Query: 680 FKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPK 739
FKRVLTNV T SVY A VK P+GM V+VQP +SF K+SKAEFN+TV INLG D P+
Sbjct: 594 FKRVLTNVENTHSVYHASVKLPSGMKVSVQPSVVSFAGKYSKAEFNMTVEINLG-DARPQ 652
Query: 740 RNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
+Y+GNFGYLTW+E NG H V SPIVSA +
Sbjct: 653 SDYIGNFGYLTWWEANGTHVVSSPIVSAIA 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 774 | ||||||
| UNIPROTKB|Q0JD53 | 777 | Os04g0430700 "Os04g0430700 pro | 0.974 | 0.970 | 0.528 | 2.1e-212 | |
| UNIPROTKB|Q6I5K9 | 761 | OSJNBb0088F07.10 "Putative sub | 0.943 | 0.959 | 0.447 | 3.2e-159 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.954 | 0.976 | 0.426 | 5.2e-152 | |
| TAIR|locus:2165366 | 780 | SBT1.3 "AT5G51750" [Arabidopsi | 0.953 | 0.946 | 0.410 | 3.3e-150 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.941 | 0.954 | 0.430 | 4.3e-148 | |
| TAIR|locus:2087512 | 777 | AT3G14067 "AT3G14067" [Arabido | 0.957 | 0.953 | 0.417 | 9e-148 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.957 | 0.969 | 0.419 | 4.5e-146 | |
| UNIPROTKB|Q69P78 | 770 | OJ1344_B01.33 "Putative serine | 0.952 | 0.957 | 0.413 | 5.7e-146 | |
| UNIPROTKB|Q8S1N3 | 760 | P0677H08.26 "Os01g0868900 prot | 0.939 | 0.956 | 0.424 | 1.9e-145 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.947 | 0.944 | 0.410 | 1.1e-144 |
| UNIPROTKB|Q0JD53 Os04g0430700 "Os04g0430700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2053 (727.8 bits), Expect = 2.1e-212, P = 2.1e-212
Identities = 411/777 (52%), Positives = 532/777 (68%)
Query: 9 LMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDA- 67
L +++ + V +A +A DR+ Y+V MD +AMPAPF+TH WY S LSS S+ D A
Sbjct: 7 LSLVAFMAAVAAAAAA-AGDDRRPYVVRMDVSAMPAPFATHDGWYRSVLSSASARDAAAA 65
Query: 68 PT--HLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHA 125
P HLYTY+H ++GFSAVL+ ++ +++ GH + ET+ LHTT TP F+GL A
Sbjct: 66 PAAEHLYTYSHAMNGFSAVLTARQVEEIRRADGHVAVFPETYARLHTTRTPAFLGLSAGA 125
Query: 126 GLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMP-PVPERWRGACEVGVEFNASHCNRKL 184
G WPA+ +G+DV+VG++D+GVWPES SF D G+ PVP RW+GACE G F S CNRKL
Sbjct: 126 GAWPASRYGADVVVGIVDTGVWPESASFSDAGVAAPVPARWKGACEAGASFRPSMCNRKL 185
Query: 185 IGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIG 244
+GARSF+KGL+Q GL IS DYDSPRD++GHG+HTSST AG+ V A+YFGYA GTA G
Sbjct: 186 VGARSFSKGLRQRGLNISDD-DYDSPRDYYGHGSHTSSTAAGAAVPGASYFGYANGTATG 244
Query: 245 VAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIG 304
VAPMAR+AMYK F DTL++A+ DVLA MDQAIADGVDVMSLSLGFPE+ +D N +AIG
Sbjct: 245 VAPMARVAMYKAVFSADTLESASTDVLAAMDQAIADGVDVMSLSLGFPESPYDTNVVAIG 304
Query: 305 AFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLG---NEELSV 361
AFAA+++GI V CSAGN G Y++ NGAPWITTVGA T+DR F A VTLG S+
Sbjct: 305 AFAAVRRGILVTCSAGNDGSDSYTVLNGAPWITTVGASTIDRAFTATVTLGAGAGGARSI 364
Query: 362 IGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQL 421
+G+SVYP + +Y+G GNR+KE CE S + V GKY+FC G + +Q+
Sbjct: 365 VGRSVYPGRVPAGAAALYYGRGNRTKERCESGSLSRKDVRGKYVFCNAGEGG---IHEQM 421
Query: 422 EEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQIT 481
EV+ G I +++ ++ + P D+ P V V ++G +++Y A S++F T
Sbjct: 422 YEVQSNGGRGVIAASNMKEIMDPSDYVTPVVLVTPSDGAAIQRYATAAAAPRASVRFAGT 481
Query: 482 ILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIG--KLLT 539
LG KP+P VA FSSRGPS SP ILKPD++APGVDIL AWVPN+ + + D G KL T
Sbjct: 482 ELGVKPAPAVAYFSSRGPSPVSPAILKPDVVAPGVDILAAWVPNKEVMEL-DGGETKLYT 540
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDM-IADISTGV 598
Y L SGTSM+ PH AG+A LL++ H +WS AA+RSAMMTTA V DNA D + + G
Sbjct: 541 NYMLVSGTSMASPHVAGVAALLRSAHPDWSPAAVRSAMMTTAYVKDNADDADLVSMPGGS 600
Query: 599 AGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCA-LNYTSQQIRVLTGTSNFTCEHG 657
GTPLD+G+GH++PN+A DPGLVYDI DY+ +LC L YTS+Q+ + G C G
Sbjct: 601 PGTPLDYGSGHVSPNQATDPGLVYDITADDYVAFLCGELRYTSRQVAAIAG-HRAGCPAG 659
Query: 658 -----NLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVT 712
+ DLNYPSF++ILN TN+A+ TF R LTNVA + + Y V APAGM V V P T
Sbjct: 660 AGAASHRDLNYPSFMVILNKTNSATRTFTRTLTNVAGSPAKYAVSVTAPAGMAVKVTPAT 719
Query: 713 LSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
LSF K S F++TV ++ NY+GN+G+L+W EV G+H VRSPIVSAF+
Sbjct: 720 LSFAGKGSTQGFSVTVQVSQVKRSRDGDNYIGNYGFLSWNEVGGQHVVRSPIVSAFA 776
|
|
| UNIPROTKB|Q6I5K9 OSJNBb0088F07.10 "Putative subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1551 (551.0 bits), Expect = 3.2e-159, P = 3.2e-159
Identities = 346/773 (44%), Positives = 470/773 (60%)
Query: 10 MILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPT 69
++L + C TSA D YIVHMDK+AMP F++ WY STL++ ++P D
Sbjct: 18 LLLVLFCWAPGLTSA---ADTAAYIVHMDKSAMPRAFASQASWYESTLAA-AAPGADM-- 71
Query: 70 HLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLH--TTHTPKFVGLKKHAG- 126
Y Y++ + GF+A ++ L+ L+ G Y + + TTHTP+F+G+ +G
Sbjct: 72 -FYVYDNAMHGFAARVTADELEKLRGSRGFVSCYPDDARAVRRDTTHTPEFLGVSASSGG 130
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASH-CNRKLI 185
LW A+ +G DVIVGV+D+GVWPES SF+DDG+PPVP RW+G CE G F+A CNRKL+
Sbjct: 131 LWEASEYGEDVIVGVVDTGVWPESASFRDDGLPPVPARWKGYCESGTAFDAGKVCNRKLV 190
Query: 186 GARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGV 245
GAR FNKGL + T +SPRD GHGTHTSST AGS V A++FGYA GTA G+
Sbjct: 191 GARKFNKGLVA---ATNLTIAVNSPRDTDGHGTHTSSTAAGSPVAGASFFGYAPGTARGM 247
Query: 246 APMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGA 305
AP AR+AMYK + T + D+LA +DQAIADGVDV+SLSLG + F +PIAIGA
Sbjct: 248 APRARVAMYKALWDEGTYPS---DILAAIDQAIADGVDVLSLSLGLNDVPFYRDPIAIGA 304
Query: 306 FAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKS 365
FAA+++G+FV+ SAGN GP P + NG PW TV +GT DREFA V LG + +VIG+S
Sbjct: 305 FAAMQRGVFVSTSAGNDGPDPGFLHNGTPWTLTVASGTGDREFAGIVRLG-DGTTVIGQS 363
Query: 366 VYP--ENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEE 423
+YP + S ++ G C+ N T K + C D +++ + +
Sbjct: 364 MYPGSPSTIASSGFVFLG-------ACD-NDTALARNRDKVVLC--DATDSLSAAIFAVQ 413
Query: 424 VRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITIL 483
V + RA G +S DS + L F P V ++ + + +YI + SIKF +TIL
Sbjct: 414 VAKARA-GLFLSNDSFRELSE-HFTFPGVILSPQDAPALLQYIKRSRAPRASIKFGVTIL 471
Query: 484 GTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYAL 543
GTKP+P VA +SSRGPS P +LKPD+LAPG IL +W N ++T+ +L + + +
Sbjct: 472 GTKPAPVVATYSSRGPSASCPTVLKPDVLAPGSLILASWPENVSVSTVGS-QQLYSRFNV 530
Query: 544 ESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG-TP 602
SGTSMSCPHA+G+A L+KA H EWS AA+RSAMMTTA +DN I D+ G TP
Sbjct: 531 ISGTSMSCPHASGVAALIKAVHPEWSPAAVRSAMMTTASAVDNTNAPIKDMGRANRGATP 590
Query: 603 LDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVL--TGTSNFTCEHGNLD 660
L G+GHI+PN+A+DPGLVYD DY+ +CA+NYT+ QI+ + + +S C LD
Sbjct: 591 LAMGSGHIDPNRAVDPGLVYDAGADDYVKLMCAMNYTAAQIKTVAQSPSSAVDCAGATLD 650
Query: 661 LNYPSFIIILNN--TNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEK 718
LNYPSFI + T A+ TF R +TNV + Y+A VK G+TV+V P L F K
Sbjct: 651 LNYPSFIAFFDPGATAPAARTFTRAVTNVGDAPASYSAKVKGLGGLTVSVSPERLVFGRK 710
Query: 719 HSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFSVS 771
H ++ + + + N + G LTW + GK+ VRSPIV+ + S
Sbjct: 711 HETQKYTVVIRGQMKNKTDEVLH-----GSLTWVDDAGKYTVRSPIVATTASS 758
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
Identities = 332/779 (42%), Positives = 464/779 (59%)
Query: 3 SFTGFILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSS 62
S T F L++ C V S++S D+ TYIVHM K+ MP+ F H +WY S+L S+S
Sbjct: 7 SSTAFFLLLCLGFCHVSSSSS-----DQGTYIVHMAKSQMPSSFDLHSNWYDSSLRSIS- 60
Query: 63 PDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLK 122
D+ LYTY + + GFS L+Q +L PG E LHTT TP F+GL
Sbjct: 61 ---DSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLD 117
Query: 123 KH-AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCN 181
+H A L+P AG SDV+VGV+D+GVWPES S+ D+G P+P W+G CE G F AS CN
Sbjct: 118 EHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCN 177
Query: 182 RKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGT 241
RKLIGAR F +G + I + + SPRD GHGTHTSST AGS V+ A+ GYA GT
Sbjct: 178 RKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGT 237
Query: 242 AIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPI 301
A G+AP AR+A+YK+ + + D+LA +D+AIAD V+V+S+SLG + + + +
Sbjct: 238 ARGMAPRARVAVYKVCWLGGCFSS---DILAAIDKAIADNVNVLSMSLGGGMSDYYRDGV 294
Query: 302 AIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSV 361
AIGAFAA+++GI V+CSAGN+GP S+ N APWITTVGAGT+DR+F A LGN + +
Sbjct: 295 AIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGK-NF 353
Query: 362 IGKSVYP-ENLFVSREP-IYFGYGNRSKE--ICEGNSTDPRAVAGKYIFCAFDYKGNITV 417
G S++ E L P IY G + + +C + P V GK + C D N V
Sbjct: 354 TGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMC--DRGINARV 411
Query: 418 SQQLEEVRRTRAAGAIIS--ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVS 475
Q+ + V+ G I++ A + + L +P TV G++++ Y+ N T S
Sbjct: 412 -QKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTAS 470
Query: 476 IKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNR-PIATIRDI 534
I T++G KPSP VA FSSRGP+ +P ILKPD++APGV+IL AW P D
Sbjct: 471 ISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDS 530
Query: 535 GKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADI 594
++ E+ + SGTSMSCPH +G+A LLK+ H EWS AAIRSA+MTTA + DI
Sbjct: 531 RRV--EFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDI 588
Query: 595 STGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTC 654
+TG TP D GAGH++P A +PGL+YD+ +DY+ +LCALNYTS QIR ++ N+TC
Sbjct: 589 ATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVS-RRNYTC 647
Query: 655 E----HGNLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQP 710
+ + DLNYPSF + N ++ + R +T+V + V G+ ++V+P
Sbjct: 648 DPSKSYSVADLNYPSFAV--NVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEP 705
Query: 711 VTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769
L+F E + K + +T ++ S K + +FG + W + GKH V SP+ +++
Sbjct: 706 AVLNFKEANEKKSYTVTFTVD-----SSKPSGSNSFGSIEWSD--GKHVVGSPVAISWT 757
|
|
| TAIR|locus:2165366 SBT1.3 "AT5G51750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
Identities = 322/784 (41%), Positives = 461/784 (58%)
Query: 7 FILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSS---- 62
F+ +ILSI + L A + +KTY++HMDK+AMP P++ H WY S ++S++
Sbjct: 11 FLFIILSINLIFLQAETTTQISTKKTYVIHMDKSAMPLPYTNHLQWYSSKINSVTQHKSQ 70
Query: 63 -PDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGL 121
+G+ LYTY G +A L+Q + L++ G ET LHTT +P F+GL
Sbjct: 71 EEEGNNNRILYTYQTAFHGLAAQLTQEEAERLEEEDGVVAVIPETRYELHTTRSPTFLGL 130
Query: 122 KKHAG--LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASH 179
++ +W DV+VGV+D+G+WPES SF D GM PVP WRGACE G F +
Sbjct: 131 ERQESERVWAERVTDHDVVVGVLDTGIWPESESFNDTGMSPVPATWRGACETGKRFLKRN 190
Query: 180 CNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAE 239
CNRK++GAR F +G + KI +Y SPRD GHGTHT++T+AGS V+ AN FG+A
Sbjct: 191 CNRKIVGARVFYRGYEAATGKIDEELEYKSPRDRDGHGTHTAATVAGSPVKGANLFGFAY 250
Query: 240 GTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDEN 299
GTA G+A AR+A YK+ + + D+L+ +DQA+ADGV V+S+SLG +T+ +
Sbjct: 251 GTARGMAQKARVAAYKVCWVGGCFSS---DILSAVDQAVADGVQVLSISLGGGVSTYSRD 307
Query: 300 PIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGN--- 356
++I F A++ G+FV+CSAGN GP P S+ N +PWITTVGA T+DR+F A V +G
Sbjct: 308 SLSIATFGAMEMGVFVSCSAGNGGPDPISLTNVSPWITTVGASTMDRDFPATVKIGTMRT 367
Query: 357 -EELSVI-GKSVYPENLFVSREP-IYFGYGNRSKE---ICEGNSTDPRAVAGKYIFCAFD 410
+ +S+ G++V P+N + P +Y G S + C + D R VAGK + C D
Sbjct: 368 FKGVSLYKGRTVLPKN---KQYPLVYLGRNASSPDPTSFCLDGALDRRHVAGKIVIC--D 422
Query: 411 YKGNITVSQQLEEVRRTRAAGAIIS--ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIIN 468
+G Q+ + V+R G +++ A + + L +P V V G+L+K+Y +
Sbjct: 423 -RGVTPRVQKGQVVKRAGGIGMVLTNTATNGEELVADSHMLPAVAVGEKEGKLIKQYAMT 481
Query: 469 ADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPI 528
+ AT S++ T +G KPSP VA FSSRGP+ S ILKPD+LAPGV+IL AW +
Sbjct: 482 SKKATASLEILGTRIGIKPSPVVAAFSSRGPNFLSLEILKPDLLAPGVNILAAWTGDMAP 541
Query: 529 ATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
+++ + + ++ + SGTSMSCPH +G+A L+K+ H +WS AAI+SA+MTTA V DN +
Sbjct: 542 SSLSSDPRRV-KFNILSGTSMSCPHVSGVAALIKSRHPDWSPAAIKSALMTTAYVHDNMF 600
Query: 589 DMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTG 648
+ D S +P D GAGHI+P +A DPGLVYDI Q+Y +LC + + Q++V T
Sbjct: 601 KPLTDASGAAPSSPYDHGAGHIDPLRATDPGLVYDIGPQEYFEFLCTQDLSPSQLKVFTK 660
Query: 649 TSNFTCEH------GNLDLNYPSFIIIL-NNTNTASFTFKRVLTNVAVTRSVYTAVVKAP 701
SN TC+H GNL NYP+ + NT+ + T +R +TNV S Y V
Sbjct: 661 HSNRTCKHTLAKNPGNL--NYPAISALFPENTHVKAMTLRRTVTNVGPHISSYKVSVSPF 718
Query: 702 AGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVR 761
G +V VQP TL+F KH K + +T KR FG L W H+VR
Sbjct: 719 KGASVTVQPKTLNFTSKHQKLSYTVTFRTRF----RMKRP---EFGGLVWKSTT--HKVR 769
Query: 762 SPIV 765
SP++
Sbjct: 770 SPVI 773
|
|
| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
Identities = 335/779 (43%), Positives = 463/779 (59%)
Query: 8 ILMILSILCLVLSATS---AYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPD 64
+++ ++ + LV +AT+ A + G+R+TYIVHM ++A P F H WY ++L S+S
Sbjct: 9 VILAVAAVALVAAATATAAAAVGGERRTYIVHMSRSAKPNDFVEHGEWYAASLQSVS--- 65
Query: 65 GDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKH 124
DA T LYTY+ +V G+SA L++ + L+ PG E LHTT TP+F+GL +
Sbjct: 66 -DAATVLYTYDTIVHGYSARLTRAEAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDRT 124
Query: 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKL 184
L+P + GSDVIVGV+D+GVWPE PS+ D G+ PVP W+G CE G +FNAS CN+KL
Sbjct: 125 DALFPQSNTGSDVIVGVLDTGVWPERPSYDDAGLGPVPAGWKGKCEEGNDFNASACNKKL 184
Query: 185 IGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIG 244
IGAR F G + + T+ + SPRD GHGTHTSST AGS V+ A+ GYA GTA G
Sbjct: 185 IGARFFLTGYEAAKGPVDTSKESRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKG 244
Query: 245 VAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIG 304
+AP AR+A YK+ + + D+L M+ A+ DGVDV+SLSLG + + IA+G
Sbjct: 245 MAPHARVATYKVCWVGGCFSS---DILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIAVG 301
Query: 305 AFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGK 364
A++A+++GIFV+CSAGN+GP ++ NGAPWITTVGAGT+DR+F A V LGN + + G
Sbjct: 302 AYSAMERGIFVSCSAGNAGPGSATLSNGAPWITTVGAGTLDRDFPAHVVLGNGK-NYSGV 360
Query: 365 SVYP-ENLFVSREP-IYFGYGNRSK--EICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQ 420
S+Y + L + P IY G + S +C S P VAGK + C D N V +
Sbjct: 361 SLYSGKQLPTTPVPFIYAGNASNSSMGALCMSGSLIPEKVAGKIVLC--DRGTNARVQKG 418
Query: 421 LEEVRRTRAAGAIIS--ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKF 478
V+ AG +++ A + + L +P V G+ ++ Y ++ N T SI F
Sbjct: 419 FV-VKDAGGAGMVLANTAANGEELVADAHVLPGAGVGQKAGDTMRAYALSDPNPTASIVF 477
Query: 479 QITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPN-RPIATIRDIGKL 537
T +G +PSP VA FSSRGP+ +P ILKPD++APGV+IL AW + P D ++
Sbjct: 478 AGTQVGIQPSPVVAAFSSRGPNTVTPGILKPDLIAPGVNILAAWSGSVGPSGLAGDSRRV 537
Query: 538 LTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY---DMIADI 594
+ + SGTSMSCPH +G+A LL+A H +WS AAIRSA+MTT+ N Y + I D+
Sbjct: 538 --GFNIISGTSMSCPHVSGLAALLRAAHQDWSPAAIRSALMTTSY---NGYPNGNGILDV 592
Query: 595 STGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTC 654
+TG+ TPLD GAGH++P+KA+DPGLVYDI DY+++LCA++Y QI LT + C
Sbjct: 593 ATGLPATPLDVGAGHVDPSKAVDPGLVYDIAAADYVDFLCAISYGPMQIAALTKHTTDAC 652
Query: 655 EHGNLD-----LNYPSFIIILNNTN-TASFTFKRVLTNVAVTRSVYTAVVKAPAG---MT 705
GN LNYPSF + T T T R +TNV Y A AG +T
Sbjct: 653 S-GNRTYAVTALNYPSFSVTFPATGGTEKHT--RTVTNVGQP-GTYKVTASAAAGSTPVT 708
Query: 706 VAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPI 764
V+V+P TL+F + K + ++ P FG L W + H V SPI
Sbjct: 709 VSVEPSTLTFTKSGEKQSYT----VSFAAAAMPSGT--NGFGRLVWS--SDHHVVSSPI 759
|
|
| TAIR|locus:2087512 AT3G14067 "AT3G14067" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
Identities = 323/773 (41%), Positives = 460/773 (59%)
Query: 8 ILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDA 67
I + +L S +S+ G ++YIVH+ ++ P+ FS+H++W++S L SL S A
Sbjct: 9 IFFVFPLLLCFFSPSSSSSDG-LESYIVHVQRSHKPSLFSSHNNWHVSLLRSLPSSPQPA 67
Query: 68 PTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHAGL 127
T LY+Y+ V GFSA LS L++ P + +HTTHTP F+G +++GL
Sbjct: 68 -TLLYSYSRAVHGFSARLSPIQTAALRRHPSVISVIPDQAREIHTTHTPAFLGFSQNSGL 126
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
W + +G DVIVGV+D+G+WPE PSF D G+ P+P W+G CE+G +F AS CNRKLIGA
Sbjct: 127 WSNSNYGEDVIVGVLDTGIWPEHPSFSDSGLGPIPSTWKGECEIGPDFPASSCNRKLIGA 186
Query: 188 RSFNKGL--KQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGV 245
R+F +G ++ G K + SPRD GHGTHT+ST AGS V NA+ + YA GTA G+
Sbjct: 187 RAFYRGYLTQRNGTKKHAAKESRSPRDTEGHGTHTASTAAGSVVANASLYQYARGTATGM 246
Query: 246 APMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT--FDENPIAI 303
A ARIA YKI + + D+LA MDQA+ADGV V+SLS+G + + + IAI
Sbjct: 247 ASKARIAAYKICWTGGCYDS---DILAAMDQAVADGVHVISLSVGASGSAPEYHTDSIAI 303
Query: 304 GAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363
GAF A + GI V+CSAGNSGP P + N APWI TVGA TVDREFAA G+ ++ G
Sbjct: 304 GAFGATRHGIVVSCSAGNSGPNPETATNIAPWILTVGASTVDREFAANAITGDGKVFT-G 362
Query: 364 KSVYP-ENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLE 422
S+Y E+L S+ + + G+ +C + V GK + C D GN V +
Sbjct: 363 TSLYAGESLPDSQLSLVYS-GDCGSRLCYPGKLNSSLVEGKIVLC--DRGGNARVEKG-S 418
Query: 423 EVRRTRAAGAIIS--ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQI 480
V+ AG I++ A+S + L +P V G+ ++ YI +D+ T I F
Sbjct: 419 AVKLAGGAGMILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTAKISFLG 478
Query: 481 TILG-TKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
T++G + PSP+VA FSSRGP+ +P ILKPD++APGV+IL W T DI
Sbjct: 479 TLIGPSPPSPRVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWT-GMVGPTDLDIDPRRV 537
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
++ + SGTSMSCPH +G+A LL+ H +WS AAI+SA++TTA ++N+ + I D++TG +
Sbjct: 538 QFNIISGTSMSCPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDLATGKS 597
Query: 600 GTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNF--TCEHG 657
GAGH++PNKA++PGLVYDIEV++Y+ +LCA+ Y I V CE
Sbjct: 598 SNSFIHGAGHVDPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYDACETS 657
Query: 658 NL----DLNYPSFIIILNNTNTASFTFKRVLTNVAVT-RSVYTAVVKAPAGMTVAVQPVT 712
L DLNYPSF ++ +T +KRV+ NV +VY VK+PA + + V P
Sbjct: 658 KLRTAGDLNYPSFSVVFASTGEV-VKYKRVVKNVGSNVDAVYEVGVKSPANVEIDVSPSK 716
Query: 713 LSFDEKHSKAEFNLTV-NINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPI 764
L+F ++ S E+ +T ++ LG V + FG + W +G+H V+SP+
Sbjct: 717 LAFSKEKSVLEYEVTFKSVVLGGGVGSVPGH--EFGSIEW--TDGEHVVKSPV 765
|
|
| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1427 (507.4 bits), Expect = 4.5e-146, P = 4.5e-146
Identities = 328/781 (41%), Positives = 456/781 (58%)
Query: 1 MGSFTGFILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSL 60
M S T +L+ LS + +A+ A KT+I +D +MP+ F TH+HWY + +
Sbjct: 1 MASSTIVLLLFLSFPFISFAASQA-----AKTFIFRIDGGSMPSIFPTHYHWYSTEFAEE 55
Query: 61 SSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVG 120
S ++ Y+ V GFSAV++ NL+ P + + LHTT +P+F+G
Sbjct: 56 SRI-------VHVYHTVFHGFSAVVTPDEADNLRNHPAVLAVFEDRRRELHTTRSPQFLG 108
Query: 121 LKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHC 180
L+ GLW + +GSDVI+GV D+G+WPE SF D + P+P+RWRG CE G F+ +C
Sbjct: 109 LQNQKGLWSESDYGSDVIIGVFDTGIWPERRSFSDLNLGPIPKRWRGVCESGARFSPRNC 168
Query: 181 NRKLIGARSFNKGLKQYGLK-ISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAE 239
NRK+IGAR F KG + + I+ T ++ SPRD GHGTHTSST AG A+ GYA
Sbjct: 169 NRKIIGARFFAKGQQAAVIGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKASMSGYAS 228
Query: 240 GTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE---TTF 296
G A GVAP ARIA YK+ + D+ D+LA D A+ DGVDV+S+S+G + + +
Sbjct: 229 GVAKGVAPKARIAAYKVC-WKDS-GCLDSDILAAFDAAVRDGVDVISISIGGGDGITSPY 286
Query: 297 DENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGN 356
+PIAIG++ A KGIFV+ SAGN GP S+ N APW+TTVGA T+DR F A LG+
Sbjct: 287 YLDPIAIGSYGAASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFPADAILGD 346
Query: 357 EELSVIGKSVYPENLFVSRE-PI-YFGY-GNRSKEICEGNSTDPRAVAGKYIFCAFDYKG 413
+ G S+Y R P+ Y G G S +C N+ DP+ V GK + C D
Sbjct: 347 GH-RLRGVSLYAGVPLNGRMFPVVYPGKSGMSSASLCMENTLDPKQVRGKIVIC--DRGS 403
Query: 414 NITVSQQLEEVRRTRAAGAIIS--ADSRQNLFPGDFDM-PFVTVNLNNGELVKKYIINAD 470
+ V++ L V++ G I++ A + + L GD + P V N G+ +K Y +
Sbjct: 404 SPRVAKGLV-VKKAGGVGMILANGASNGEGLV-GDAHLIPACAVGSNEGDRIKAYASSHP 461
Query: 471 NATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPN-RPIA 529
N SI F+ TI+G KP+P +A FS RGP+ SP ILKPD++APGV+IL AW P
Sbjct: 462 NPIASIDFRGTIVGIKPAPVIASFSGRGPNGLSPEILKPDLIAPGVNILAAWTDAVGPTG 521
Query: 530 TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYD 589
D K TE+ + SGTSM+CPH +G A LLK+ H +WS A IRSAMMTT +++DN+
Sbjct: 522 LPSDPRK--TEFNILSGTSMACPHVSGAAALLKSAHPDWSPAVIRSAMMTTTNLVDNSNR 579
Query: 590 MIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGT 649
+ D STG + TP D+G+GH+N +AM+PGLVYDI DYI +LC++ Y + I+V+T T
Sbjct: 580 SLIDESTGKSATPYDYGSGHLNLGRAMNPGLVYDITNDDYITFLCSIGYGPKTIQVITRT 639
Query: 650 S---NFTCEHGNLDLNYPSFIIIL--NNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGM 704
T + +LNYPS + N S T R TNV +VY A +++P G+
Sbjct: 640 PVRCPTTRKPSPGNLNYPSITAVFPTNRRGLVSKTVIRTATNVGQAEAVYRARIESPRGV 699
Query: 705 TVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPI 764
TV V+P L F + + +TV +N N V + + FG +TWF+ GKH VRSPI
Sbjct: 700 TVTVKPPRLVFTSAVKRRSYAVTVTVNTRNVVLGETGAV--FGSVTWFD-GGKHVVRSPI 756
Query: 765 V 765
V
Sbjct: 757 V 757
|
|
| UNIPROTKB|Q69P78 OJ1344_B01.33 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1426 (507.0 bits), Expect = 5.7e-146, P = 5.7e-146
Identities = 321/777 (41%), Positives = 457/777 (58%)
Query: 9 LMILSILCLVLSATSAYM-PGD-RKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGD 66
L+ L++L +V S GD TYIV+++ A PAP++TH HW+ + L+SLS D
Sbjct: 7 LLALAVLVVVSSCVRLVSGAGDGAATYIVYLNPALKPAPYATHLHWHHAHLASLSV---D 63
Query: 67 APTHL-YTYNHVV-DGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKH 124
HL Y+Y F+A L +H+ L+ P + + LHTT +P F+ L +
Sbjct: 64 PSRHLLYSYTSAAPSAFAARLLPSHVAALRGHPAVASVHEDVILPLHTTRSPLFLHLPPY 123
Query: 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGV-EFNASHCNRK 183
A G +DVI+GV+D+GVWPESPSF D GM PVP RWRG+CE +F +S CNRK
Sbjct: 124 DAP-DADGASTDVIIGVLDTGVWPESPSFGDVGMGPVPSRWRGSCETNATDFPSSMCNRK 182
Query: 184 LIGARSFNKGLKQYGLKIST--TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGT 241
LIGAR+F +G G + + ++ SPRD GHGTHT+ST AG+ V +A GYAEGT
Sbjct: 183 LIGARAFFRGYGAGGGGNGSHVSLEFSSPRDHDGHGTHTASTAAGAVVADAGLLGYAEGT 242
Query: 242 AIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPI 301
A G+AP AR+A YK+ + + D+LAGM++AI DGVDV+SLSLG +PI
Sbjct: 243 ARGMAPGARVAAYKVCWRQGCFSS---DILAGMEKAIDDGVDVLSLSLGGGAFPLSRDPI 299
Query: 302 AIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSV 361
A+GA AA ++GI VACSAGNSGP P S+ N APW+ TVGAGT+DR F A LGN E
Sbjct: 300 AVGALAATRRGIVVACSAGNSGPSPSSLVNTAPWVITVGAGTLDRNFPAYAELGNGETHA 359
Query: 362 IGKSVYP-ENLFVSREPIYFGYGNRS----KEICEGNSTDPRAVAGKYIFCAFDYKGNIT 416
G S+Y + L + P+ + G R+ ++C + D AV GK + C D GN
Sbjct: 360 -GMSLYSGDGLGDEKLPVVYNKGIRAGSNASKLCMEGTLDAAAVKGKVVLC--DRGGNSR 416
Query: 417 VSQQLEEVRRTRAAGAIIS--ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATV 474
V + L V++ G +++ A S + + +P V V +G+ +++Y+ + +A V
Sbjct: 417 VEKGLV-VKQAGGVGMVLANTAQSGEEVVADSHLLPAVAVGAKSGDAIRRYVESDADAEV 475
Query: 475 SIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDI 534
+ F T L +P+P VA FSSRGP+ + +LKPD++ PGV+IL W + T +
Sbjct: 476 GLTFAGTALDVRPAPVVAAFSSRGPNRQVAQLLKPDVIGPGVNILAGWTGSVG-PTGLTV 534
Query: 535 GKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADI 594
+ + + + SGTSMSCPH +G+A +KA H +WS +AI+SA+MTTA +DN I D
Sbjct: 535 DERRSPFNILSGTSMSCPHISGLAAFVKAAHPDWSPSAIKSALMTTAYTVDNTGSPIVDA 594
Query: 595 STGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTC 654
++ TP GAGH++P KA+ PGLVYD V DY+ +LC++ + Q++ +T N TC
Sbjct: 595 ASNTTATPWSIGAGHVDPVKALSPGLVYDTSVDDYVAFLCSVGTSPPQVQAITAAPNVTC 654
Query: 655 EH---GNLDLNYPSFIIILNNTNTASFT----FKRVLTNVAVTRSVYTAVVKAPAGMTVA 707
+ DLNYPSF ++ +++S + ++R LTNV RSVYTA V P+ + VA
Sbjct: 655 QRKLSSPGDLNYPSFSVVFGRRSSSSRSTTVKYRRELTNVGDGRSVYTARVTGPSDIAVA 714
Query: 708 VQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPI 764
V+P L+F + K + +T +P FG+LTW NG+H VRSPI
Sbjct: 715 VKPARLAFKKAGDKLRYTVTFK-----STTPGGPTDAAFGWLTWS--NGEHDVRSPI 764
|
|
| UNIPROTKB|Q8S1N3 P0677H08.26 "Os01g0868900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
Identities = 330/778 (42%), Positives = 454/778 (58%)
Query: 8 ILMILSILCLVLSATSAYMPGDRKTYIVHMDKAAMPAPF-----STH-HHWYMSTLSSLS 61
I+ ++ LC V +A SA + TYIVHMDK+AMP+ ST WY +TL + +
Sbjct: 7 IVAVVVALC-VAAAASA----ETATYIVHMDKSAMPSGGGGGNGSTSLESWYAATLRA-A 60
Query: 62 SPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLET-FGHLHTTHTPKFVG 120
+P +Y Y + + GF+A LS L + PG +YL+ TTHTP+F+G
Sbjct: 61 APGARM---IYVYRNAMSGFAARLSAEQHARLSRSPGFLSSYLDAPVTRRDTTHTPEFLG 117
Query: 121 LKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFN-ASH 179
+ GLW A +G VIVGV+D+GVWPES S++DDG+PPVP RW+G CE G F+ A
Sbjct: 118 VSGAGGLWETASYGDGVIVGVVDTGVWPESGSYRDDGLPPVPARWKGYCESGTRFDGAKA 177
Query: 180 CNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAE 239
CNRKLIGAR F+ GL + + T +SPRD GHGTHTSST AGS V A+YFGYA
Sbjct: 178 CNRKLIGARKFSAGLAAALGRRNITIAVNSPRDTDGHGTHTSSTAAGSPVPGASYFGYAP 237
Query: 240 GTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDEN 299
G A G+AP AR+A+YK+ F D++A +DQAIADGVDV+S+SLG +
Sbjct: 238 GVARGMAPRARVAVYKVLFDEG---GYTTDIVAAIDQAIADGVDVLSISLGLNNRPLHTD 294
Query: 300 PIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEEL 359
P+AIG+FAA++ GIFV+ SAGN GP + NGAPW TV AGTVDREF+ V LG +
Sbjct: 295 PVAIGSFAAMQHGIFVSTSAGNDGPGLSVLHNGAPWALTVAAGTVDREFSGIVELG-DGT 353
Query: 360 SVIGKSVYPENLFVSRE-PIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVS 418
+VIG+S+Y + +++ P+ + + C+ N T R K + C + +
Sbjct: 354 TVIGESLYAGSPPITQSTPLVY------LDSCD-NFTAIRRNRDKIVLCDAQ-ASSFALQ 405
Query: 419 QQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKF 478
++ V+ AAG + + L F P ++ ++G + +YI + T I F
Sbjct: 406 VAVQFVQDANAAGGLFLTNDPFRLLFEQFTFPGALLSPHDGPAILRYIQRSGAPTAKIAF 465
Query: 479 QITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLL 538
+ T+L TKP+P+ A +SSRGP++ P +LKPDI+APG +L +W + +A + G +
Sbjct: 466 RATLLNTKPAPEAAAYSSRGPAVSCPTVLKPDIMAPGSLVLASWAES--VAVV---GNMT 520
Query: 539 TEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADIS-TG 597
+ + + SGTSM+ PHAAG+A LL+A H EWS AAIRSAMMTTA LDN I D++ G
Sbjct: 521 SPFNIISGTSMATPHAAGVAALLRAVHPEWSPAAIRSAMMTTAATLDNTGRSINDMARAG 580
Query: 598 VAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFT--CE 655
A TPL G+GHI+PN+A DPGLVYD DY+ +CA+ Y IR +T S + C
Sbjct: 581 HAATPLAMGSGHIDPNRAADPGLVYDAVPGDYVELMCAMGYNLSDIRAVTQWSTYAVNCS 640
Query: 656 HGNL-DLNYPSFIIILNNTNTASF-----TFKRVLTNVAVTRSVYTAVVKAP-AGMTVAV 708
+ DLNYPSFI + + A+ TF RV+TNV + Y A VK G+ V+V
Sbjct: 641 GASSPDLNYPSFIAYFDRRSAAAAAAETKTFVRVVTNVGAGAASYRAKVKGNLGGLAVSV 700
Query: 709 QPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVS 766
P L F +K ++ L L + L G LTW + GK+ VRSPIV+
Sbjct: 701 TPSRLVFGKKGETQKYTLV----LRGKIKGADKVL--HGSLTWVDDAGKYTVRSPIVA 752
|
|
| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
Identities = 318/775 (41%), Positives = 452/775 (58%)
Query: 15 LCLV---LSAT-SAYMPGDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSP-----DG 65
LCLV L A+ SA P KTYIV M + MP+ F +H WY ST+ S+SS +
Sbjct: 13 LCLVTVLLQASLSACAPTP-KTYIVQMAASEMPSSFDFYHEWYASTVKSVSSSQLEDEED 71
Query: 66 DAPTHL-YTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKH 124
DA T + Y Y GF+A L + + + + G ET LHTT +P F+G+
Sbjct: 72 DASTRIIYNYETAFHGFAAQLDEEEAELMAEADGVLAVIPETVLQLHTTRSPDFLGIGPE 131
Query: 125 AG--LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNR 182
+W + DV+VGV+D+G+WPESPSF D G+ PVP +W+G C+ G F ++CNR
Sbjct: 132 VSNRIWSDSLADHDVVVGVLDTGIWPESPSFSDKGLGPVPAKWKGLCQTGRGFTTANCNR 191
Query: 183 KLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTA 242
K++GAR F G + I+ T + SPRD GHGTHT++T AGS VQ+AN +GYA G A
Sbjct: 192 KIVGARIFYNGYEASSGPINETTELKSPRDQDGHGTHTAATAAGSPVQDANLYGYAGGVA 251
Query: 243 IGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIA 302
G+AP AR+A YK+ + + D+LA +D+A++DGVDV+S+SLG + + + ++
Sbjct: 252 RGMAPRARVAAYKVCWAGGCFSS---DILAAVDRAVSDGVDVLSISLGGGASRYYLDSLS 308
Query: 303 IGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVI 362
I +F A++ G+FVACSAGN+GP P S+ N +PWITTVGA T+DR+F A VTLGN ++
Sbjct: 309 IASFGAMQMGVFVACSAGNAGPDPISLTNLSPWITTVGASTMDRDFPATVTLGNGA-NIT 367
Query: 363 GKSVYP--ENLFVSRE-PIYFGYGNRS----KEICEGNSTDPRAVAGKYIFCAFDYKGNI 415
G S+Y NL + P+ + GN S + +C + P V+GK + C D +G
Sbjct: 368 GVSLYKGLRNLSPQEQYPVVYLGGNSSMPDPRSLCLEGTLQPHDVSGKIVIC--D-RGIS 424
Query: 416 TVSQQLEEVRRTRAAGAIIS--ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNAT 473
Q+ + V+ G I++ A + + L +P V V G K Y +A T
Sbjct: 425 PRVQKGQVVKEAGGIGMILANTAANGEELVADSHLLPAVAVGEAEGIAAKSYSKSAPKPT 484
Query: 474 VSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRD 533
++ F T LG +PSP VA FSSRGP++ + ILKPD++APGV+IL AW + +++
Sbjct: 485 ATLSFGGTKLGIRPSPVVAAFSSRGPNILTLEILKPDVVAPGVNILAAWSGDASPSSLSS 544
Query: 534 IGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIAD 593
+ + + + SGTSMSCPH AG+A L+KA+H +WS A I+SA+MTTA V DN Y + D
Sbjct: 545 DSRRVG-FNILSGTSMSCPHVAGVAALIKASHPDWSPAQIKSALMTTAYVHDNTYRPMKD 603
Query: 594 ISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFT 653
+TG A TP + GAGHI+P +A+ PGLVYDI DY+ +LC + T Q+R T SN T
Sbjct: 604 AATGKASTPFEHGAGHIHPVRALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNSNMT 663
Query: 654 CEH---GNLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQP 710
C H DLNYP+ ++ + + + T +R +TNV S Y V G V V+P
Sbjct: 664 CRHTFSSASDLNYPAISVVFADQPSKALTVRRTVTNVGPPSSTYHVKVTKFKGADVIVEP 723
Query: 711 VTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIV 765
TL F + K + +TV +P+ FG L+W + G H VRSP+V
Sbjct: 724 NTLHFVSTNQKLSYKVTVTTKAAQK-APE------FGALSWSD--GVHIVRSPVV 769
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65351 | SUBL_ARATH | 3, ., 4, ., 2, 1, ., - | 0.4254 | 0.9431 | 0.9643 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 774 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-108 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 7e-29 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 3e-24 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 8e-23 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 7e-20 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-19 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 6e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 6e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-13 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 8e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 9e-13 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 4e-12 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 4e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 8e-12 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 1e-11 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-11 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 2e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 7e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 8e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-10 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 4e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-09 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 5e-09 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 6e-09 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 6e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-08 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-08 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 4e-08 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 6e-08 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 9e-07 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 5e-06 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 6e-06 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 2e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 3e-05 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 7e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 2e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 3e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 3e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 4e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 6e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 7e-04 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 0.002 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.004 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.004 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = e-108
Identities = 123/238 (51%), Positives = 151/238 (63%), Gaps = 5/238 (2%)
Query: 109 HLHTTHTPKFVGLKKHAG--LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWR 166
LHTT +P F+GL G L AA G +I+GV+D+G+WPE PSF D G P P W
Sbjct: 2 QLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWP 61
Query: 167 GACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAG 226
G C G +FN CN KLIGAR F+ G YG S +Y SPRD+ GHGTHT+ST AG
Sbjct: 62 GDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDG-EYRSPRDYDGHGTHTASTAAG 120
Query: 227 SRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMS 286
+ V NA+ G+A GTA GVAP ARIA+YK+ D+LA +DQAIADGVDV+S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVC--WPDGGCFGSDILAAIDQAIADGVDVIS 178
Query: 287 LSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTV 344
S+G E+PIAI A++ GIFVA SAGNSGP ++ N APW+TTV A T+
Sbjct: 179 YSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 7e-29
Identities = 43/87 (49%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 503 SPWI-------LKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAA 555
+PW+ LKPDI APGVDIL AW P ++A SGTSM+ PH A
Sbjct: 225 APWVTTVAASTLKPDIAAPGVDILAAWTPEGAD----PGDARGEDFAFISGTSMASPHVA 280
Query: 556 GIATLLKATHHEWSSAAIRSAMMTTAD 582
G+A LLK+ H +WS AAI+SA+MTTA
Sbjct: 281 GVAALLKSAHPDWSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 60/169 (35%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 452 VTVNLNNGELVKKYII----NADNA-TVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWI 506
V N+G Y I A +A TV T+ + V SSRGP S
Sbjct: 153 VAAAGNSGPAP--YTIGSPATAPSAITVG---ASTVADVAEADTVGPSSSRGPP-TSDSA 206
Query: 507 LKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH 566
+KPDI+APGVDI+ P YA SGTSM+ PH AG A LLK H
Sbjct: 207 IKPDIVAPGVDIMSTA-PGSGTG-----------YARMSGTSMAAPHVAGAAALLKQAHP 254
Query: 567 EWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKA 615
+WS A I++A+M TA L + S GV GAG ++ +A
Sbjct: 255 DWSPAQIKAALMNTAKPLYD--------SDGVVYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 8e-23
Identities = 70/218 (32%), Positives = 93/218 (42%), Gaps = 42/218 (19%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSF--- 190
G V V VID+G+ P G P N K+ G F
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFP---------------------NDKVKGGYDFVDD 39
Query: 191 --NKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPM 248
+ + S D GHGTH + IAG G GT GVAP
Sbjct: 40 DYDPMDTRPYPSPLGDA---SAGDATGHGTHVAGIIAG--------NGVNVGTIKGVAPK 88
Query: 249 ARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAA 308
A + YK+ + ++A ++QA+ DG+DV++LSLG D+ P AI A
Sbjct: 89 ADLYAYKVLGPGGSG--TTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDD-PDAIAINNA 145
Query: 309 LKKGIFVACSAGNSGPRPYSIEN--GAPWITTVGAGTV 344
+K G+ V +AGNSGP PY+I + AP TVGA TV
Sbjct: 146 VKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 7e-20
Identities = 57/217 (26%), Positives = 88/217 (40%), Gaps = 57/217 (26%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
G + V V+D+G+ P F G +F + R
Sbjct: 1 GKGITVAVLDTGIDAPHPDFD------------GRIIRFADFVNTVNGRT---------- 38
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
+P D GHGTH + IAGS + G GVAP A +
Sbjct: 39 ---------------TPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGANLVG 76
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIAD----GVDVMSLSLGFP-ETTFDENPIAIGAFAA 308
K+ +D+ + D++AG+D + + + V++LSLG P + ++ E+P+
Sbjct: 77 VKVL--DDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERL 134
Query: 309 LKKGIFVACSAGNSGPRPYSIENGAP----WITTVGA 341
GI V +AGNSGP P +I +P + TVGA
Sbjct: 135 WDAGIVVVVAAGNSGPGPGTI--TSPGNSPKVITVGA 169
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 2e-19
Identities = 57/218 (26%), Positives = 78/218 (35%), Gaps = 49/218 (22%)
Query: 137 VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196
V V VID+GV P+ P E G
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENG------------------------ 36
Query: 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKI 256
P D GHGTH + IA S G +GVAP A++ K+
Sbjct: 37 ----------PTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKV 77
Query: 257 AFYNDTLKAAAVDVLAGMDQAIAD-GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFV 315
+ ++ D+ A +D A AD G DV++LSLG P + +A K G+ V
Sbjct: 78 L--DGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLV 135
Query: 316 ACSAGNSGPR---PYSIENGAPWITTVGAGTVDREFAA 350
+AGN GP +P + VGA D A+
Sbjct: 136 VAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPAS 173
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 6e-15
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSP---------WILKPDILAPGVDILGAWVPNRPIAT 530
+++ + A FSS G S S KPD+ APGVD+ A
Sbjct: 153 LSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGD-- 210
Query: 531 IRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582
+Y SGTSM+ PH AG+A LL A H + S I+ A+ TA
Sbjct: 211 --------GQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 64/222 (28%), Positives = 91/222 (40%), Gaps = 40/222 (18%)
Query: 130 AAGF-GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGAR 188
A G G V V V+D+G+ P+ G C G K+ G
Sbjct: 7 AEGITGKGVKVAVVDTGIDYTHPAL-------------GGC-FGPGC-------KVAGGY 45
Query: 189 SFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPM 248
F G G D P D GHGTH + IA N N +G+ GVAP
Sbjct: 46 DF-VGDDYDGTN--PPVPDDDPMDCQGHGTHVAGIIAA----NPNAYGF-----TGVAPE 93
Query: 249 ARIAMYKIAFYNDTLKAAAVDVL-AGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFA 307
A + Y++ F + D + A +A DG DV++ SLG P + + E+P A+ A
Sbjct: 94 ATLGAYRV-F--GCSGSTTEDTIIAAFLRAYEDGADVITASLGGP-SGWSEDPWAVVASR 149
Query: 308 ALKKGIFVACSAGNSGPR-PYSIENGAPWITTVGAGTVDREF 348
+ G+ V +AGN G R P+ + A + +VD F
Sbjct: 150 IVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVDSYF 191
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 58/218 (26%), Positives = 85/218 (38%), Gaps = 57/218 (26%)
Query: 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLK 195
V V VID+G+ P K ++G +F
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL---------------------------NIVGGANF----- 28
Query: 196 QYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYK 255
T D + +D GHGTH + IA N G +GVAP A + Y
Sbjct: 29 -------TGDDNNDYQDGNGHGTHVAGIIAAL----DNGVG-----VVGVAPEADL--YA 70
Query: 256 IAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAF-AALKKGIF 314
+ ND D++AG++ AI +G+D++++SLG P ++P A A GI
Sbjct: 71 VKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAYAAGIL 126
Query: 315 VACSAGNSGP--RPYSIENGAPWITTVGAGTVDREFAA 350
V +AGNSG Y P + VGA + A+
Sbjct: 127 VVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRAS 164
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 26/138 (18%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
IT+ + +A FS+ G + KPDI+APG +IL + L
Sbjct: 166 ITVGAVTENGTIADFSNYGGPVDGI---KPDIVAPGGNILSSGPGGD-----------LG 211
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
Y SGTSM+ P AG A LL + + + +R+ ++TTA G
Sbjct: 212 GYDSHSGTSMAAPLVAGAAALLLSANPSLTPETLRALLVTTAT------------DLGSM 259
Query: 600 GTPLDFGAGHINPNKAMD 617
G FG G +N KA+
Sbjct: 260 GLDRSFGYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
A FSS GP + ++ APGVDIL + N YA SGTSM
Sbjct: 161 NRASFSSTGPEV--------ELAAPGVDILSTYPNND--------------YAYLSGTSM 198
Query: 550 SCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580
+ PH AG+A L+ + E ++A +R A+ T
Sbjct: 199 ATPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I++ T + +A FS+ G D+ APGVDIL
Sbjct: 178 ISVAATDSNDALASFSNYGKK-------TVDLAAPGVDILSTSPGGG------------- 217
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582
Y SGTSM+ PH AG A LL + + ++A I+ A++++AD
Sbjct: 218 -YGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 9e-13
Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 29/206 (14%)
Query: 127 LWPAAGF-GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASH-----C 180
LW G+ G ++V VIDSGV P +F+ + + A
Sbjct: 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFR--LDDDSKAK-YSEEFEAKKKKAGIGYGKYY 58
Query: 181 NRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEG 240
N K+ A ++ I D S HG H + +AG+ + N G
Sbjct: 59 NEKVPFAYNYADNNDD----ILDEDDGSS------HGMHVAGIVAGNGDEEDN------G 102
Query: 241 TAI-GVAPMARIAMYKIAFYNDTLKAAAVD-VLAGMDQAIADGVDVMSLSLGFPETTFDE 298
I GVAP A++ K+ F N + D ++ A+ G DV+++SLG D
Sbjct: 103 EGIKGVAPEAQLLAMKV-FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDL 161
Query: 299 NPIAIGAFA-ALKKGIFVACSAGNSG 323
+ A A + G+ V +AGN G
Sbjct: 162 DDPEQQAIKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 51/217 (23%), Positives = 70/217 (32%), Gaps = 61/217 (28%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
G+ V VGVIDSG+ P F G AS+
Sbjct: 2 GAGVKVGVIDSGIDLSHPEF-----------------AGRVSEASY-------------- 30
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
Y S D HGTH + IA +R G GVAP A +
Sbjct: 31 -----YVAVNDAGYASNGDGDSHGTHVAGVIAAARD---------GGGMHGVAPDATLYS 76
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENP------------- 300
+ + + D+ A D A GV +++ S G +
Sbjct: 77 ARA-SASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTL 135
Query: 301 IAIGAFAALKKGIFVACSAGNSGPR-PYSIENGAPWI 336
+A A AA G+FV +AGN G P P++
Sbjct: 136 LAALARAANAGGLFVF-AAGNDGQANPSLAAAALPYL 171
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVD 269
D GHGTH S TI G G A+G IGVAP A + K+ D +
Sbjct: 39 VFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVL---DDGGGSLSQ 86
Query: 270 VLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSI 329
++AGM+ A+ DV+S+SLG + D A+ A + +FV SAGN G
Sbjct: 87 IIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTGALFVV-SAGNEGHGTSGS 145
Query: 330 ENGAPWITTVGAGTVDRE 347
A +VGA VDR+
Sbjct: 146 PGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-12
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 494 FSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPH 553
FSS GP+ LKPD+ APG +IL + P+A YA+ SGTSM+ P+
Sbjct: 191 FSSWGPTNE--LYLKPDVAAPGGNILSTY----PLA--------GGGYAVLSGTSMATPY 236
Query: 554 AAGIATLLKATHHE-WSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINP 612
AG A LL H S A +R + +TA L + + GAG +N
Sbjct: 237 VAGAAALLIQARHGKLSPAELRDLLASTAKPLPWS---DGTSALPDLAPVAQQGAGLVNA 293
Query: 613 NKA 615
KA
Sbjct: 294 YKA 296
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 24/127 (18%)
Query: 468 NADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRP 527
++N +VS S VA FSSRGP+ +KPD++APG IL A
Sbjct: 179 ASNNPSVSNGEGGLGQSDN-SDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGG 235
Query: 528 IATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEW------------SSAAIRS 575
I D + Y +SGTSM+ P AG A LL+ ++ S+A +++
Sbjct: 236 IGDTSD-----SAYTSKSGTSMATPLVAGAAALLR----QYFVDGYYPTKFNPSAALLKA 286
Query: 576 AMMTTAD 582
++ +A
Sbjct: 287 LLINSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-11
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 352 VTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSK---EICEGNSTDPRAVAGKYIFCA 408
VTLGN + +++G+S+YP NL P+ + N +C S DP V GK + C
Sbjct: 2 VTLGNGK-TIVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC- 57
Query: 409 FDYKGNITVSQQLEEVRRTRAAGAII--SADSRQNLFPGDFDMPFVTVNLNNGELVKKYI 466
D GN + + + V+ AG I+ ++ +P V V+ +G + YI
Sbjct: 58 -DRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYI 116
Query: 467 INADNATVSI 476
+ N T +I
Sbjct: 117 NSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
++ FSSRGP+ +KPD++APG +I+ P +G E SGTSM+
Sbjct: 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAG--VGSGYFEM---SGTSMA 232
Query: 551 CPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582
PH +G LL + + ++ + TA
Sbjct: 233 TPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 32 TYIVHMDK-AAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHL 90
TYIV + A FS+H W+ S+ + LY+Y H +GF+A L++
Sbjct: 1 TYIVKFKDGVSKAAVFSSHKSWHASSKEEAAGAS-----ILYSYKHGFNGFAAKLTEEEA 55
Query: 91 KNLQKMPG 98
+ L+K P
Sbjct: 56 EKLRKHPD 63
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 36/148 (24%)
Query: 481 TILGTKPSPQVAKFSSRG--PSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLL 538
+ Q++ FSS G P L LKPDI APG +I +T+ D
Sbjct: 224 KKVPNPNGGQMSGFSSWGPTPDLD----LKPDITAPGGNIY---------STVND----- 265
Query: 539 TEYALESGTSMSCPHAAGIATL----LKATHHEWSSA----AIRSAMMTTAD-VLDNAYD 589
Y SGTSM+ PH AG + L LK + + S +++ +M TA LD+
Sbjct: 266 NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDT 325
Query: 590 MIADISTGVAGTPLDFGAGHINPNKAMD 617
S P GAG I+ KA+
Sbjct: 326 K-TYYS------PRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
A FS+ G + DI APGVDIL AW+ + T A SGTSM
Sbjct: 182 ARASFSNYGSCV--------DIFAPGVDILSAWIGSD------------TATATLSGTSM 221
Query: 550 SCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581
+ PH AG+A L + + S A +++ ++ A
Sbjct: 222 AAPHVAGLAAYLLSLGPDLSPAEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 40/152 (26%), Positives = 54/152 (35%), Gaps = 32/152 (21%)
Query: 203 TTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDT 262
D D GHGTH + T+ G GVA A + + +
Sbjct: 52 DFVGGDPDSDCNGHGTHVAGTVGGKTY--------------GVAKKANL--VAVKVLDCN 95
Query: 263 LKAAAVDVLAGMDQAIADGVD-----VMSLSLGFP-ETTFDENPIAIGAFAAL-KKGIFV 315
++AG++ D V ++SLG T D A AA G+ V
Sbjct: 96 GSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDA------AVAAAVNAGVVV 149
Query: 316 ACSAGNSG--PRPYSIENGAPWITTVGAGTVD 345
+AGNS YS + AP TVGA D
Sbjct: 150 VVAAGNSNQDACNYSPAS-APEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
+A FSSRGPS +KPDI APGV+I A P Y SGTSM
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAV-PG-------------GGYGSSSGTSM 229
Query: 550 SCPHAAGIATLLKA 563
+ PH AG+A LL +
Sbjct: 230 AAPHVAGVAALLWS 243
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 51/195 (26%), Positives = 71/195 (36%), Gaps = 48/195 (24%)
Query: 137 VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196
V V VIDSG+ P+ P K+ + S +++
Sbjct: 2 VTVAVIDSGIDPDHPDLKN--------------------SISS------YSKNLVPKGGY 35
Query: 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKI 256
G + T D + D GHGT + IA A G GVAP I Y++
Sbjct: 36 DGKEAGETGDINDIVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRV 83
Query: 257 AFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG-----FPETTFDENPIAIGAFA---A 308
A + ++ + A DGVDV++LSLG E D+ A A
Sbjct: 84 F--GSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYA 141
Query: 309 LKKGIFVACSAGNSG 323
KG V +AGN G
Sbjct: 142 KSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + T + A FS+ G W+ D+ APG IL
Sbjct: 178 IAVAATDQDDKRASFSNYGK-----WV---DVSAPGGGILSTTPDGD------------- 216
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
YA SGTSM+ PH AG+A LL + S++ +R A+ TAD +
Sbjct: 217 -YAYMSGTSMATPHVAGVAALLYSQ-GPLSASEVRDALKKTADDI 259
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 43/185 (23%)
Query: 181 NRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEG 240
N +++G F S +Y HGT ST+AG Y G
Sbjct: 26 NLRILGEYDFVDN--------SNNTNYTDD----DHGTAVLSTMAG----------YTPG 63
Query: 241 TAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENP 300
+G AP A + + + +A + A + GVD++S SLG+ TTFD
Sbjct: 64 VMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGY--TTFDNPT 121
Query: 301 --------------IAIGAFAALKKGIFVACSAGNSGPRPYSI---ENGAPWITTVGAGT 343
I+ A A KG+ V SAGN G + A + +VGA
Sbjct: 122 YSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGA-- 179
Query: 344 VDREF 348
VD
Sbjct: 180 VDANG 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 5e-09
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 494 FSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPH 553
FS RGP+ +KPDI APGV+IL A Y SGTS++
Sbjct: 362 FSGRGPT--RDGRIKPDIAAPGVNILTASPGGG--------------YTTRSGTSVAAAI 405
Query: 554 AAGIATLL 561
AG LL
Sbjct: 406 VAGACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 6e-09
Identities = 45/215 (20%), Positives = 67/215 (31%), Gaps = 56/215 (26%)
Query: 138 IVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQY 197
VGV+D+G+ P + F
Sbjct: 1 TVGVLDTGIDVNHPDLSG----------------------RYIGLAYRNGYDFVDN---- 34
Query: 198 GLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKI- 256
D D GHGTH + IA + +GVAP A++ K+
Sbjct: 35 ------DPDPTPDDDNNGHGTHVAGIIAAGDNNGS--------GGVGVAPNAKLESVKVL 80
Query: 257 --AFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFA---ALKK 311
+ D+ A A++ + + V+++SLG + AI A A K
Sbjct: 81 PGSGGTDSELAGAIE----WAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNK 136
Query: 312 GIFVACSAGNSGPRPYSIENGAP-----WITTVGA 341
G +AGN G + P I TVGA
Sbjct: 137 GSLFVVAAGNGGDYADNNPVSDPASANNII-TVGA 170
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 58/223 (26%), Positives = 75/223 (33%), Gaps = 55/223 (24%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
W G GS V V V+D+GV P P K +
Sbjct: 22 WDITG-GSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLG 54
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
F D D D GHGTH + IA N G A GVAP
Sbjct: 55 YDFVDN------------DSD-AMDDNGHGTHVAGIIA----AATNN---GTGVA-GVAP 93
Query: 248 MARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFD-ENPIAIGAF 306
A+I K+ + + D+ G+ A G V++LSLG + + I
Sbjct: 94 KAKIMPVKV--LDANGSGSLADIANGIRYAADKGAKVINLSLGGGLGSTALQEAINY--- 148
Query: 307 AALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFA 349
A KG+ V +AGN G S P V A D + A
Sbjct: 149 -AWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRA 190
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 36/143 (25%)
Query: 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAV 268
+D GHGTH + TI G V G GVA A IA+
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEIALIGKV--LGDGGGGDG 89
Query: 269 DVLAGMDQAIADGVDVMSLSLGFP-------------------ET------TFDENPIAI 303
+LAG+ A+A+G DV+S+SLG E FD +
Sbjct: 90 GILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLV 149
Query: 304 GAFAALKKGIFVACSAGNSGPRP 326
A AAL +G + +AGN RP
Sbjct: 150 AAQAALARGTLIVAAAGNESQRP 172
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 50/157 (31%), Positives = 61/157 (38%), Gaps = 35/157 (22%)
Query: 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMAR-IAMYKIAFYNDTLKA 265
P D GHGTHT T+ G+ G IGVAP AR IA A +
Sbjct: 45 TPLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIAC--RALDRNGGND 93
Query: 266 AAVDVLAGMDQAIA----DGV--------DVMSLSLGFPETTFDENPIAIGAFAALKK-G 312
A D L +A G DV++ S G P +N A AA + G
Sbjct: 94 A--DYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPS---GDNEWLQPAVAAWRAAG 148
Query: 313 IFVACSAGNSGPRPYSIENGA---PWITTVGAGTVDR 346
IF +AGN GPR ++ P VGA DR
Sbjct: 149 IFPVFAAGNDGPRCSTLNAPPANYPESFAVGA--TDR 183
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 60/221 (27%)
Query: 134 GSDVIVGVIDSGVWPESPSFKD-DG-----------MPPVPERWRGACEVGVEFNASHCN 181
G V+VG+ID+G+ P F++ DG +P P G +
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP-------PGGYYGGGEYT 55
Query: 182 RKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGT 241
++I A Y + S RD GHGTH + AG+ N ++
Sbjct: 56 EEIINA--ALASDNPYDIVPS--------RDENGHGTHVAGIAAGNGDNNPDF------- 98
Query: 242 AIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD-------------VMSLS 288
GVAP A + + K+ L+ DV + I + V+++S
Sbjct: 99 -KGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINIS 157
Query: 289 LGFPETTFD----ENPI--AIGAFAALKKGIFVACSAGNSG 323
LG T F + + I A + L +GI V AGN G
Sbjct: 158 LG---TNFGSHDGTSLLERYIDAISRL-RGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 495 SSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHA 554
S S DI APG DIL + YA SGTSM+ P
Sbjct: 168 DGTPASPSSNGGAGVDIAAPGGDILSSPTTGG------------GGYATLSGTSMAAPIV 215
Query: 555 AGIATLLKATHHEWSSAAIRSAMMTT 580
AG+A LL + + + + A +++A+++T
Sbjct: 216 AGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 457 NNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV 516
N G K I +A + +++ + A FSS GP+ + LKPD++A G
Sbjct: 156 NEGSTQWKGIGAPADA----ENVLSVGAVDANGNKASFSSIGPT--ADGRLKPDVMALGT 209
Query: 517 DILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSA 576
I +GTS SCP AG+ L H W++ I+ A
Sbjct: 210 GIYVINGDGN--------------ITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEA 255
Query: 577 MMTTAD 582
++ +A
Sbjct: 256 ILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 21/100 (21%)
Query: 509 PDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEW 568
DI APGVDI+ A Y SGTSM+ PH AG+A L W
Sbjct: 213 VDIAAPGVDIVSAAPGGG--------------YRSMSGTSMATPHVAGVAAL-------W 251
Query: 569 SSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAG 608
+ A ++ A +L D G G
Sbjct: 252 AEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVG 291
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDIL-GAWVPNRPIATIRDIGKLL 538
I + T Q A +S+ GP++ D+ APG D P +
Sbjct: 192 IAVGATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGG 243
Query: 539 TEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580
+ Y GTSM+ PH AG+A L+K+ + + A I S + +T
Sbjct: 244 STYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 51/212 (24%), Positives = 71/212 (33%), Gaps = 42/212 (19%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
G IVGV D+G+ F D + N H RK++ S +
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFN--------------KTNLFH--RKIVRYDSLS-- 47
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
D+ D GHGTH + IAG +++ Y GVAP A++
Sbjct: 48 --------------DTKDDVDGHGTHVAGIIAGKGNDSSSISLYK-----GVAPKAKLYF 88
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT-FDENPIAIGAFAALKKG 312
I + L + D+ G + S S G P + A FA
Sbjct: 89 QDIGDTSGNLS-SPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPD 147
Query: 313 IFVACSAGNSGPRPYSIENGAPW---ITTVGA 341
I SAGN G + + TVGA
Sbjct: 148 ILFVFSAGNDGNDGSNTIGSPATAKNVLTVGA 179
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.5 bits (117), Expect = 5e-06
Identities = 51/226 (22%), Positives = 71/226 (31%), Gaps = 55/226 (24%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
G V V VID+GV P + F G
Sbjct: 141 GKGVTVAVIDTGVDASHPDLAGSA---------------------------VAGGDFVDG 173
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
D GHGTH + TIA N GVAP A++ +
Sbjct: 174 D-----------PEPPFLDDNGHGTHVAGTIAAVIFDNGAGV-------AGVAPGAKLLL 215
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADG--VDVMSLSLGFPETTFDENPI-AIGAFAALK 310
K + DV G++ A G DV++LSLG + + A AA
Sbjct: 216 VK-VLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANA 274
Query: 311 KGIFVACSAGNSGPRPYSIENGAPW------ITTVGAGTVDREFAA 350
G+ + +AGN G + P + VGA + A+
Sbjct: 275 GGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVAS 320
|
Length = 508 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 54/223 (24%), Positives = 76/223 (34%), Gaps = 58/223 (26%)
Query: 135 SDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGL 194
DV+V VID+GV P KD+ W E+ G + G
Sbjct: 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIP-------------GNGIDDDG- 40
Query: 195 KQYGLKISTTFDYD------SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPM 248
G + + ++ P D GHGTH + I G A GVA
Sbjct: 41 --NGY-VDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVG-------NNGIGIA-GVAWN 89
Query: 249 ARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG---FPETTFDENPIAIGA 305
+I K F D + +D A+ G +++ S G + D AI
Sbjct: 90 VKIMPLK--FLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRD----AIA- 142
Query: 306 FAALKKGIFVACSAGNSG------PR-PYSIENGAPWITTVGA 341
A+ GI +AGN G P P S + I +V A
Sbjct: 143 -RAIDAGILFVAAAGNDGTNNDKTPTYPASYDL--DNIISVAA 182
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 208 DSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAA 267
+ D GHGT + IA SR Q +G AP A I ++++ F N+ + +
Sbjct: 39 KTLDDGLGHGTFVAGVIASSREQ-----------CLGFAPDAEIYIFRV-FTNNQVSYTS 86
Query: 268 VDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY 327
L + AI +DV++LS+G P+ F + P + I + + GN GP
Sbjct: 87 W-FLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYG 143
Query: 328 SIENGAPWITTVGAGTVD 345
++ N A + +G G +D
Sbjct: 144 TLNNPADQMDVIGVGGID 161
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 28/96 (29%)
Query: 495 SSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALES-----GTSM 549
SSRGP+ L I APG I A VPN + L+ GTSM
Sbjct: 333 SSRGPTADGA--LGVSISAPGGAI--ASVPN---------------WTLQGSQLMNGTSM 373
Query: 550 SCPHAAG-IATL---LKATHHEWSSAAIRSAMMTTA 581
S P+A G IA L LKA ++ ++R A+ TA
Sbjct: 374 SSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 27/109 (24%)
Query: 508 KPDILAP-GVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH 566
KPD+ AP GV+ + P GTS + PHAAG+A L+ + +
Sbjct: 190 KPDVTAPDGVNGTVDGDGDGPPNF--------------FGTSAAAPHAAGVAALVLSANP 235
Query: 567 EWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKA 615
+ A IR A+ +TA DM G G G+G ++ ++A
Sbjct: 236 GLTPADIRDALRSTAL------DM------GEPGYDNASGSGLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/80 (25%), Positives = 23/80 (28%), Gaps = 14/80 (17%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS 569
D APGVD+ A G Y SGTS + P LL
Sbjct: 168 DFAAPGVDVWVA----------APGGG----YRYVSGTSFAAPFVTAALALLLQASPLAP 213
Query: 570 SAAIRSAMMTTADVLDNAYD 589
A T D+ D
Sbjct: 214 DDARARLAATAKDLGPPGRD 233
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 21/103 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
+ + + FS GP W+ D+ APG +I+ G
Sbjct: 179 LAVGSIDRDGTPSSFSLPGP-----WV---DLAAPGENIVSL-----------SPGG--D 217
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582
A SGTS + P +G A L+++ + ++A +R + TAD
Sbjct: 218 GLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATAD 260
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDT---LKAAAVDVLA 272
HGT +S +AG+ Q G+ P A + Y + A+A+ +
Sbjct: 38 HGTAVASLLAGAGAQRP-----------GLLPGADL--YGADVFGRAGGGEGASALALAR 84
Query: 273 GMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGP 324
+D GV V+++SL P +A AA +G+ + +AGN GP
Sbjct: 85 ALDWLAEQGVRVVNISLAGPPNALLAAAVA----AAAARGMVLVAAAGNDGP 132
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 20/124 (16%)
Query: 457 NNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV 516
N+G V + I + T + A +S+ G + D++APGV
Sbjct: 139 NSGRSVSSGYAANPSV-------IAVAATDSNDARASYSNYGNYV--------DLVAPGV 183
Query: 517 DILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSA 576
I G Y SGTS + P AAG+A L+ + + + A +
Sbjct: 184 GIWTTGTGRGSAGDYPGGG-----YGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDI 238
Query: 577 MMTT 580
+ +T
Sbjct: 239 LTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 50/151 (33%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAI-GVAPMARIAMYKIAFYNDTLKA----A 266
DFF HGT +S AG N +GY I G+AP A+IA K ++ D + A A
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTA 113
Query: 267 AVDVLAGMDQAIADG---VDVMSLSLG---FPETTF----DENPIAIGAFAALKKGIFVA 316
D + I G VDV+S S G F T + D + + I A G+ +
Sbjct: 114 GFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDAL-VTYTGVPIV 172
Query: 317 CSAGNSGPRPYSIENGAP----WITTVGAGT 343
+AGN GP +I AP +VGA T
Sbjct: 173 SAAGNGGPGYGTI--TAPGAASLAISVGAAT 201
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.0 bits (100), Expect = 6e-04
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S VA FS+ G DI APGV+IL + T+ G
Sbjct: 307 IAVGALDLSDTVASFSNDGSPT------GVDIAAPGVNILS----LSAVNTLPGDG---A 353
Query: 540 EYALESGTSMSCPHAAGIATLLKATHH-EWSSAAIRSAMMTTADVL----DNAYDMIADI 594
+Y SGTSM+ PH +G+A L+ + + E + A +R+ ++TTA + +
Sbjct: 354 DYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLA 413
Query: 595 STGVAGTPLDFGAGHINPN 613
+ A T + G N
Sbjct: 414 NLDAAATDVAGGTLPANGT 432
|
Length = 508 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 215 GHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKI---AFYNDTLKAAAVDVL 271
GHGT + IAG + + GVAP ARI + AF D + D+
Sbjct: 52 GHGTLVAGIIAGRPGEGDGF--------SGVAPDARILPIRQTSAAFEPDEGTSGVGDLG 103
Query: 272 A---GMDQAIADGVDVMSLSLGFPETT---FDENPIAIGAFAALKKGIFVACSAGNSG 323
+ +A G DV+++SL D+ + AL KG+ V +AGN+G
Sbjct: 104 TLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAAGNTG 161
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 27/123 (21%)
Query: 241 TAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD---GVDVMSLSLGFPETTFD 297
A +AP A I +Y F T+ L A+ D V+S+S G PE +
Sbjct: 82 YAGAIAPGANITLY---FAPGTVTN---GPLLAFLAAVLDNPNLPSVISISYGEPEQSLP 135
Query: 298 ENPIA-----IGAFAALKKGIFVACSAGNSGPRPYSIENGA-----------PWITTVGA 341
AA GI V ++G+SG + P++T VG
Sbjct: 136 PAYAQRVCNLFAQAAAQ--GITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGG 193
Query: 342 GTV 344
T+
Sbjct: 194 TTL 196
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 44/140 (31%), Positives = 58/140 (41%), Gaps = 32/140 (22%)
Query: 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAA---AVDVLA 272
HGTH + A +F E GVAP A+I KI DT + ++
Sbjct: 187 HGTHVAGIAAA-------HFP-EEPERNGVAPGAQIVSIKIG---DTRLGSMETGTALVR 235
Query: 273 GMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAAL------KKGIFVACSAGNSGPRP 326
M AI D++++S G E T N G L K G+ SAGN+GP
Sbjct: 236 AMIAAIETKCDLINMSYG--EATHWPNS---GRIIELMNEAVNKHGVIFVSSAGNNGPAL 290
Query: 327 YSIENGAPWITT-----VGA 341
++ GAP TT VGA
Sbjct: 291 STV--GAPGGTTSSVIGVGA 308
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 484 GTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEY-- 541
+S GP SP +KPD++A G G + LLT
Sbjct: 191 SAVGPAPAGATTSSGP--GSPGPIKPDVVAFG----GNLAYDPSGNAADGDLSLLTTLSS 244
Query: 542 ------ALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMM 578
GTS + P AA +A L A E S IR A++
Sbjct: 245 PSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 17/73 (23%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVD-ILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
A FS+ G W+ DI APGV IL Y SGTSM
Sbjct: 198 KASFSNYGR-----WV---DIAAPGVGTILSTVPKLDGDGG--------GNYEYLSGTSM 241
Query: 550 SCPHAAGIATLLK 562
+ PH +G+A L+
Sbjct: 242 AAPHVSGVAALVL 254
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 774 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 99.98 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.9 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.71 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.2 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.08 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.92 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.64 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.59 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.58 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.52 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.46 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.46 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.45 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.39 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.34 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.34 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.33 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.27 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.25 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.25 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.21 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.18 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.1 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.07 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.92 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.82 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.55 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.46 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.43 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.42 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 95.54 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 95.43 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.78 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 93.68 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 92.96 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 92.62 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 91.04 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.66 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 88.03 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 87.88 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 87.01 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 86.27 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 82.05 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-53 Score=456.74 Aligned_cols=305 Identities=53% Similarity=0.853 Sum_probs=260.9
Q ss_pred eecccCCCCCcccccccCC--CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceee
Q 046220 108 GHLHTTHTPKFVGLKKHAG--LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLI 185 (774)
Q Consensus 108 ~~~~~~~s~~~~g~~~~~~--~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~ 185 (774)
++++++++++|+++..... +|..+++|+||+|||||||||++||+|.+.+..+++..|.+.|..+..+....||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688899999999976555 47789999999999999999999999999999999999999999998888788999999
Q ss_pred eeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCC
Q 046220 186 GARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKA 265 (774)
Q Consensus 186 g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~ 265 (774)
+.++|.++++.... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+. +
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~--~ 157 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG--C 157 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC--c
Confidence 99999987654322 12234456778999999999999999987766666666677899999999999999998554 8
Q ss_pred chHHHHHHHHHHHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccC
Q 046220 266 AAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVD 345 (774)
Q Consensus 266 ~~~di~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~ 345 (774)
..+++++||++|++++++|||||||......+.+.+..+...+.++|++||+||||+|+...+.++..||+++|||++
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~-- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST-- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc--
Confidence 899999999999999999999999987655567788888889999999999999999988888888999999999720
Q ss_pred cceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHH
Q 046220 346 REFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVR 425 (774)
Q Consensus 346 ~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~ 425 (774)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCC
Q 046220 426 RTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPW 505 (774)
Q Consensus 426 ~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 505 (774)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 506 ILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 506 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+||||+|||.+|+++++....... .... ..|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 236 -~~~di~apG~~i~~~~~~~~~~~~---~~~~-~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -LKPDIAAPGVDILAAWTPEGADPG---DARG-EDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -CccceeeccCceeecccCcccccc---CCCC-CcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 477999999999999875311111 1111 68999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=447.55 Aligned_cols=299 Identities=21% Similarity=0.191 Sum_probs=213.7
Q ss_pred Ccccccc--cCCCCc--CCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCcee---eeeee
Q 046220 117 KFVGLKK--HAGLWP--AAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKL---IGARS 189 (774)
Q Consensus 117 ~~~g~~~--~~~~w~--~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki---~g~~~ 189 (774)
..|+++. ++.+|+ .+.+|+||+|||||||||++||+|.++-..... ...|+. +++. +++.. +.+++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~Grd----giDd--D~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGRK----GIDD--DNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCcc----cccc--ccCCccccccccc
Confidence 3466654 345665 456799999999999999999999864211100 001110 0000 11111 11222
Q ss_pred ccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHH
Q 046220 190 FNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVD 269 (774)
Q Consensus 190 f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~d 269 (774)
|+++ ...|.|.+||||||||||||...++.+ +.||||+|+|+++|+++..+. ++.++
T Consensus 367 fVd~-------------~~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~--G~~sd 423 (639)
T PTZ00262 367 FVNN-------------DGGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKL--GRLGD 423 (639)
T ss_pred ccCC-------------CCCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCC--ccHHH
Confidence 3221 235688999999999999998654322 589999999999999998776 88999
Q ss_pred HHHHHHHHHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCC--------------ccC----
Q 046220 270 VLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYS--------------IEN---- 331 (774)
Q Consensus 270 i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~---- 331 (774)
+++||+||++.|++|||||||+.. +...+..++.+|.++|++||+||||+|..... ++.
T Consensus 424 I~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~ 500 (639)
T PTZ00262 424 MFKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSK 500 (639)
T ss_pred HHHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhc
Confidence 999999999999999999999752 34567788889999999999999999864321 111
Q ss_pred CCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeC
Q 046220 332 GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDY 411 (774)
Q Consensus 332 ~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~ 411 (774)
..|++|+|||...+.
T Consensus 501 ~~~nVIaVGAv~~d~----------------------------------------------------------------- 515 (639)
T PTZ00262 501 KLRNVITVSNLIKDK----------------------------------------------------------------- 515 (639)
T ss_pred cCCCEEEEeeccCCC-----------------------------------------------------------------
Confidence 234455555421100
Q ss_pred CCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCcc
Q 046220 412 KGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQV 491 (774)
Q Consensus 412 g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 491 (774)
......
T Consensus 516 --------------------------------------------------------------------------~~~~s~ 521 (639)
T PTZ00262 516 --------------------------------------------------------------------------NNQYSL 521 (639)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 001123
Q ss_pred ccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHH
Q 046220 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSA 571 (774)
Q Consensus 492 a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~ 571 (774)
+.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|+++
T Consensus 522 s~~Snyg~~-------~VDIaAPG~dI~St~p~--------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 522 SPNSFYSAK-------YCQLAAPGTNIYSTFPK--------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred cccccCCCC-------cceEEeCCCCeeeccCC--------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 456666532 34999999999999886 789999999999999999999999999999999
Q ss_pred HHHHHHHccccccccccccccccCCCccCCCcccC-CCccCCCCCCCCCeee
Q 046220 572 AIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFG-AGHINPNKAMDPGLVY 622 (774)
Q Consensus 572 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G-~G~vn~~~A~~~glv~ 622 (774)
+|+++|++||.+++.. +..+| .|+||+.+|++..+.+
T Consensus 581 qV~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999876321 11233 3899999999865544
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=406.98 Aligned_cols=244 Identities=28% Similarity=0.403 Sum_probs=198.4
Q ss_pred CcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCC
Q 046220 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDY 207 (774)
Q Consensus 128 w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~ 207 (774)
|+++++|+||+|||||||||.+||+|.+. +...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCC--------------C
Confidence 89999999999999999999999999731 00011111 1
Q ss_pred CCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 046220 208 DSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSL 287 (774)
Q Consensus 208 ~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~ 287 (774)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+. +..++++++|+||++++++||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~--~~~~~~~~a~~~a~~~~~~Vin~ 105 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQV--SYTSWFLDAFNYAILTKIDVLNL 105 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCC--chHHHHHHHHHhhhhcCCCEEEe
Confidence 2345778999999999999742 1489999999999999988775 67788999999999999999999
Q ss_pred CcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCC--ccCCCCceEEecccccCcceeEEEEeCCceEEEeeee
Q 046220 288 SLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYS--IENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKS 365 (774)
Q Consensus 288 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~ 365 (774)
|||... +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||..
T Consensus 106 S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~---------------------- 161 (255)
T cd07479 106 SIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID---------------------- 161 (255)
T ss_pred eccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec----------------------
Confidence 999753 334566667778889999999999999975433 455677888888631
Q ss_pred ecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCC
Q 046220 366 VYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPG 445 (774)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 445 (774)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCC----CCCcccCeeEeCCCceEee
Q 046220 446 DFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLR----SPWILKPDILAPGVDILGA 521 (774)
Q Consensus 446 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa 521 (774)
..+.++.|||+|++.. ..+++||||.|||.+|+++
T Consensus 162 -----------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~ 200 (255)
T cd07479 162 -----------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS 200 (255)
T ss_pred -----------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeecc
Confidence 1246788999997531 1378899999999999987
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC----CCCHHHHHHHHHccccccc
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH----EWSSAAIRSAMMTTADVLD 585 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~~s~~~ik~~L~~TA~~~~ 585 (774)
... +.|..++|||||||||||++|||+|++| .++|++||++|++||++++
T Consensus 201 ~~~--------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 201 KLK--------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccC--------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 654 6788999999999999999999999999 7999999999999999874
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=414.76 Aligned_cols=287 Identities=28% Similarity=0.308 Sum_probs=191.0
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
|+||+|||||||||++||+|.++... .|.- .|+ +..++....++..+ ....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC---cCCCccCCcCCCCC------------ccCCCCCc
Confidence 79999999999999999999743110 0000 000 00011111111111 11246789
Q ss_pred CCCchhhHhhhcccccCCcccccc-ccceeeeecCCceEEEEEEEeeCCCCCCchHHHHH-------HHHHH--HhCCCc
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGY-AEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLA-------GMDQA--IADGVD 283 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~-------ai~~a--~~~gvd 283 (774)
+||||||||||||......+.+++ ....+.||||+|+|+++|++...+. .....+.+ +++|+ .+++++
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDV--IYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCc--chhhhhhhccchhhhhhhhhhccCCCce
Confidence 999999999999986543332221 1234699999999999999976543 33333333 34443 367999
Q ss_pred EEEECcCCCCCCCC-----CcHHHHHHHH-HHcCCcEEEEccCCCCCCCC--CccCCCCceEEecccccCcceeEEEEeC
Q 046220 284 VMSLSLGFPETTFD-----ENPIAIGAFA-ALKKGIFVACSAGNSGPRPY--SIENGAPWITTVGAGTVDREFAARVTLG 355 (774)
Q Consensus 284 VIn~SlG~~~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~ 355 (774)
|||||||.....+. .+..+..... +.++|+++|+||||+|+... ..+..++++|+|||++.....+..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---- 209 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---- 209 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh----
Confidence 99999998543211 1223333322 24799999999999997643 456688999999996422110000
Q ss_pred CceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEe
Q 046220 356 NEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIIS 435 (774)
Q Consensus 356 ~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~ 435 (774)
..+
T Consensus 210 ------------------------------------------------------~~~----------------------- 212 (311)
T cd07497 210 ------------------------------------------------------LFG----------------------- 212 (311)
T ss_pred ------------------------------------------------------hhc-----------------------
Confidence 000
Q ss_pred cCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCC
Q 046220 436 ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPG 515 (774)
Q Consensus 436 n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 515 (774)
......+.++.||||||+.+ +++||||+|||
T Consensus 213 -----------------------------------------------~~~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG 243 (311)
T cd07497 213 -----------------------------------------------YLPGGSGDVVSWSSRGPSIA--GDPKPDLAAIG 243 (311)
T ss_pred -----------------------------------------------cccCCCCCccccccCCCCcc--cCCCCceeccC
Confidence 00123457899999999987 89999999999
Q ss_pred CceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC------CCCHHHHHHHHHccc
Q 046220 516 VDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH------EWSSAAIRSAMMTTA 581 (774)
Q Consensus 516 ~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~s~~~ik~~L~~TA 581 (774)
++|+++.+....... .. .. ..|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 244 ~~i~s~~~~~~~~~~--~~-~~-~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 244 AFAWAPGRVLDSGGA--LD-GN-EAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceEeecccCCCCcc--cC-CC-cceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999998765322110 01 01 4799999999999999999999999986 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=408.92 Aligned_cols=270 Identities=24% Similarity=0.244 Sum_probs=202.9
Q ss_pred CCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCC
Q 046220 131 AGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSP 210 (774)
Q Consensus 131 ~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~ 210 (774)
+++|+||+|||||||||.+||+|.+...+. +.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~-----------------------l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD-----------------------LPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC-----------------------CCcceeeccc-------------cCCC
Confidence 578999999999999999998654321111 1111111110 1234
Q ss_pred CCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcC
Q 046220 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290 (774)
Q Consensus 211 ~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG 290 (774)
.|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+||+++|++|||||||
T Consensus 45 ~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~-------~~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 45 SGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG-------GGELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCchHHHHHHHHh------------------ccCCCCEEEEEecC-------CCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 578899999999993 89999999998863 45789999999999999999999999
Q ss_pred CCCCCC-CCcHHHHHHHHHHcC-CcEEEEccCCCCCCCC-CccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeec
Q 046220 291 FPETTF-DENPIAIGAFAALKK-GIFVACSAGNSGPRPY-SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVY 367 (774)
Q Consensus 291 ~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~ 367 (774)
....+. ....+..++.++.++ |++||+||||+|+... ..++..|++|+|||.+.+.......
T Consensus 100 ~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------- 164 (275)
T cd05562 100 YLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------- 164 (275)
T ss_pred ccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------
Confidence 865443 334677788888887 9999999999998543 4567899999999965332200000
Q ss_pred CCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCC
Q 046220 368 PENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDF 447 (774)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 447 (774)
| .+.
T Consensus 165 ----------------------~--------------------~~~---------------------------------- 168 (275)
T cd05562 165 ----------------------D--------------------PAP---------------------------------- 168 (275)
T ss_pred ----------------------c--------------------ccc----------------------------------
Confidence 0 000
Q ss_pred cccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCC-ceEeecCCCC
Q 046220 448 DMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV-DILGAWVPNR 526 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~~ 526 (774)
.......+.||++||+.+ +.+||||+|||+ ++.+++..
T Consensus 169 -------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~-- 207 (275)
T cd05562 169 -------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDG-- 207 (275)
T ss_pred -------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcC--
Confidence 000113456788899876 689999999975 44554433
Q ss_pred CCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccC
Q 046220 527 PIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFG 606 (774)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 606 (774)
+.|..++|||||||||||++|||+|++|+|++++||++|++||+++. .+..+..||
T Consensus 208 ------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G 263 (275)
T cd05562 208 ------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASG 263 (275)
T ss_pred ------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcC
Confidence 68899999999999999999999999999999999999999999873 234456899
Q ss_pred CCccCCCCCCC
Q 046220 607 AGHINPNKAMD 617 (774)
Q Consensus 607 ~G~vn~~~A~~ 617 (774)
||+||+.+|++
T Consensus 264 ~G~vda~~Av~ 274 (275)
T cd05562 264 SGLVDADRAVA 274 (275)
T ss_pred cCcccHHHHhh
Confidence 99999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=416.95 Aligned_cols=313 Identities=28% Similarity=0.349 Sum_probs=232.8
Q ss_pred CCCcCCC-CCCccEEEEEcCCCCCCCCCCcCCCCCCCcc-----ccccceecccccCcccCCceeeeeeeccccccccCC
Q 046220 126 GLWPAAG-FGSDVIVGVIDSGVWPESPSFKDDGMPPVPE-----RWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL 199 (774)
Q Consensus 126 ~~w~~~~-~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~-----~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~ 199 (774)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++..++|.++....
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDDI-- 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCcc--
Confidence 3788887 9999999999999999999998764432111 111122111 1224677888888887653211
Q ss_pred cccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEee--CCCCCCchHHHHHHHHHH
Q 046220 200 KISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFY--NDTLKAAAVDVLAGMDQA 277 (774)
Q Consensus 200 ~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g~~~~~~~di~~ai~~a 277 (774)
....|..+|||||||||+|...+... ...+.||||+|+|+.+|+++. .+. .....++++++++
T Consensus 76 --------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~--~~~~~~~~ai~~a 140 (346)
T cd07475 76 --------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGS--TYDDAYAKAIEDA 140 (346)
T ss_pred --------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCC--CCHHHHHHHHHHH
Confidence 11457889999999999998754221 223699999999999999974 343 7788899999999
Q ss_pred HhCCCcEEEECcCCCCCC-CCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCc----------------cCCCCceEEec
Q 046220 278 IADGVDVMSLSLGFPETT-FDENPIAIGAFAALKKGIFVACSAGNSGPRPYSI----------------ENGAPWITTVG 340 (774)
Q Consensus 278 ~~~gvdVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p~vitVg 340 (774)
++.|++|||||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||
T Consensus 141 ~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vg 220 (346)
T cd07475 141 VKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVA 220 (346)
T ss_pred HHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEe
Confidence 999999999999986532 4456677788889999999999999998653321 12233344444
Q ss_pred ccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHH
Q 046220 341 AGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQ 420 (774)
Q Consensus 341 A~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~ 420 (774)
+...
T Consensus 221 a~~~---------------------------------------------------------------------------- 224 (346)
T cd07475 221 SANK---------------------------------------------------------------------------- 224 (346)
T ss_pred eccc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred HHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCC
Q 046220 421 LEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPS 500 (774)
Q Consensus 421 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 500 (774)
.......+.++.||+|||+
T Consensus 225 -------------------------------------------------------------~~~~~~~~~~~~~S~~G~~ 243 (346)
T cd07475 225 -------------------------------------------------------------KVPNPNGGQMSGFSSWGPT 243 (346)
T ss_pred -------------------------------------------------------------ccCCCCCCccCCCcCCCCC
Confidence 0001234578899999999
Q ss_pred CCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHh----cCCCCHHH----
Q 046220 501 LRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKAT----HHEWSSAA---- 572 (774)
Q Consensus 501 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~---- 572 (774)
.. .++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 244 ~~--~~~~pdi~apG~~i~s~~~~--------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ 307 (346)
T cd07475 244 PD--LDLKPDITAPGGNIYSTVND--------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDL 307 (346)
T ss_pred cc--cCcCCeEEeCCCCeEEecCC--------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 86 78999999999999998765 67899999999999999999999998 78999876
Q ss_pred HHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCC
Q 046220 573 IRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 573 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
||++|++||.+.... ......+.+.++|+|+||+.+|++
T Consensus 308 ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 308 VKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 888999999953211 112456677899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=423.44 Aligned_cols=404 Identities=23% Similarity=0.243 Sum_probs=237.8
Q ss_pred CCCCccEEEEEcCCCCCCCCCCcC-CCCCCCccccccceecccccCcccCCceeeeeeecccc-ccccCCcccccCCCCC
Q 046220 132 GFGSDVIVGVIDSGVWPESPSFKD-DGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG-LKQYGLKISTTFDYDS 209 (774)
Q Consensus 132 ~~G~gVvVgVIDtGid~~Hp~f~d-~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~-~~~~~~~~~~~~~~~~ 209 (774)
.+|+||+|||||||||+.||+|.+ ++.+++...|++....+.. .....+...+.+. .+.. .....+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~-~~~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAA-LASDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHH-HhcCCccccCc
Confidence 379999999999999999999984 4778899999887654321 1111222222211 0000 00011223345
Q ss_pred CCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCC--------CCchHHHHHHHHHHHhC-
Q 046220 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTL--------KAAAVDVLAGMDQAIAD- 280 (774)
Q Consensus 210 ~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~--------~~~~~di~~ai~~a~~~- 280 (774)
..|..||||||||||||+..++. .+.||||+|+|+++|++...+.. .+..++++.||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 67899999999999999975432 25899999999999999876521 15788999999999974
Q ss_pred ----CCcEEEECcCCCCCC-CCCcHHHHHHHHHHcC-CcEEEEccCCCCCCCCCccCC-----CC--ceEEecccccCcc
Q 046220 281 ----GVDVMSLSLGFPETT-FDENPIAIGAFAALKK-GIFVACSAGNSGPRPYSIENG-----AP--WITTVGAGTVDRE 347 (774)
Q Consensus 281 ----gvdVIn~SlG~~~~~-~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----~p--~vitVgA~~~~~~ 347 (774)
.+.|||||||...++ ...+.++.++..+..+ |++||+||||+|....+.... .. --+.|+.... .
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~--~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEK--G 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCc--c
Confidence 468999999987543 3456777777777665 999999999999755443321 00 1133332111 1
Q ss_pred eeEEEEeC--CceEEEe-----eeeecC-CCC--CCceEeEEEccCCCCcccccCCC-CCCCCcccEEEEEEEeCCCCch
Q 046220 348 FAARVTLG--NEELSVI-----GKSVYP-ENL--FVSREPIYFGYGNRSKEICEGNS-TDPRAVAGKYIFCAFDYKGNIT 416 (774)
Q Consensus 348 ~~~~~~~~--~g~~~~~-----g~~~~~-~~~--~~~~~~l~~~~~~~~~~~c~~~~-~~~~~~~g~iv~~~~~~g~~~~ 416 (774)
+.-.+... +... +. |..... ... ....+.+.+.. ...|.... ..+..-...|.+.
T Consensus 224 ~~~eiW~~~~d~~~-v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~----t~i~v~y~~~~~~~g~~~i~i~--------- 289 (455)
T cd07478 224 FNLEIWGDFPDRFS-VSIISPSGESSGRINPGIGGSESYKFVFEG----TTVYVYYYLPEPYTGDQLIFIR--------- 289 (455)
T ss_pred eEEEEecCCCCEEE-EEEECCCCCccCccCcCCCcceeEEEEECC----eEEEEEEcCCCCCCCCeEEEEE---------
Confidence 11000000 0000 00 000000 000 00011111110 00111000 0111111112221
Q ss_pred hHHHHHHHHhcCceEEEEecC---CCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEecee------Eeccc-
Q 046220 417 VSQQLEEVRRTRAAGAIISAD---SRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQIT------ILGTK- 486 (774)
Q Consensus 417 ~~~~~~~~~~~Ga~g~i~~n~---~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~------~~~~~- 486 (774)
..+ ...|.+-+.++.. +|. -..|+|...+...+. .++.+....+ +..+.. +....
T Consensus 290 ----~~~-~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t----~f~~~~~~~t--it~Pa~~~~vitVga~~~ 354 (455)
T cd07478 290 ----FKN-IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENT----RFLEPDPYTT--LTIPGTARSVITVGAYNQ 354 (455)
T ss_pred ----ccC-CCccceEEEEEeccCCCce----EEEEecCcCcCCCCC----EeecCCCCce--EecCCCCCCcEEEEEEeC
Confidence 001 1123333333332 111 112333322222111 1222222222 222211 11122
Q ss_pred CCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhc-
Q 046220 487 PSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATH- 565 (774)
Q Consensus 487 ~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~- 565 (774)
..+.++.||||||+.+ +++||||+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 355 ~~~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~--------------~~~~~~sGTS~Aap~vaG~aALl~~~~~ 418 (455)
T cd07478 355 NNNSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPG--------------GGYTTRSGTSVAAAIVAGACALLLQWGI 418 (455)
T ss_pred CCCcccCccCCCcCCC--CCcCceEEecCCCEEEeecC--------------CcEEeeCcHHHHHHHHHHHHHHHHHhch
Confidence 2356999999999987 89999999999999999886 789999999999999999999999975
Q ss_pred -----CCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCC
Q 046220 566 -----HEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAG 608 (774)
Q Consensus 566 -----P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 608 (774)
|.|++++||++|++||+++. ...+++.+||||
T Consensus 419 ~~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 419 VRGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred hccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999999874 234667899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=402.93 Aligned_cols=294 Identities=31% Similarity=0.401 Sum_probs=228.9
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.++|..+... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc---cccCC
Confidence 56899999999999999999999999999854111 1123333334322100 01112
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcE
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDV 284 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdV 284 (774)
.+...+.|..+|||||||||+|...+ .| +.||||+|+|+.+|+++..+. .....++++|++|++++++|
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~i 127 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGS--TTEDTIIAAFLRAYEDGADV 127 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCC--CCHHHHHHHHHHHHhcCCCE
Confidence 33345677899999999999998654 12 589999999999999987765 67778899999999999999
Q ss_pred EEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCceEEE
Q 046220 285 MSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEELSV 361 (774)
Q Consensus 285 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 361 (774)
||||||.... +..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 128 In~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------ 188 (312)
T cd07489 128 ITASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------ 188 (312)
T ss_pred EEeCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------------
Confidence 9999998643 33467777788888999999999999986532 2345567777777510
Q ss_pred eeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC
Q 046220 362 IGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN 441 (774)
Q Consensus 362 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 441 (774)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEee
Q 046220 442 LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGA 521 (774)
Q Consensus 442 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 521 (774)
+.||++||+.+ ...||||+|||++++++
T Consensus 189 --------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~ 216 (312)
T cd07489 189 --------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILST 216 (312)
T ss_pred --------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEe
Confidence 56899999987 68999999999999998
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhc-CCCCHHHHHHHHHccccccccccccccccCCCccC
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATH-HEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG 600 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 600 (774)
++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..... ....
T Consensus 217 ~~~~~------------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~~~~ 281 (312)
T cd07489 217 YPLAG------------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---PDLA 281 (312)
T ss_pred eeCCC------------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---cCCC
Confidence 87632 458999999999999999999999999 9999999999999999988654321111 1135
Q ss_pred CCcccCCCccCCCCCCCCC
Q 046220 601 TPLDFGAGHINPNKAMDPG 619 (774)
Q Consensus 601 ~~~~~G~G~vn~~~A~~~g 619 (774)
+..++|||+||+.+|++..
T Consensus 282 ~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 282 PVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred CHhhcCcceeeHHHHhcCC
Confidence 6679999999999999953
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=390.32 Aligned_cols=248 Identities=26% Similarity=0.346 Sum_probs=203.0
Q ss_pred CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCC
Q 046220 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206 (774)
Q Consensus 127 ~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~ 206 (774)
+|+.+++|+||+|||||+|||++||+|.+..+.+.. .+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~--------------------------~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF--------------------------TYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc--------------------------Cccc-------------c
Confidence 799999999999999999999999999854221100 0000 0
Q ss_pred CCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEE
Q 046220 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMS 286 (774)
Q Consensus 207 ~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn 286 (774)
.....|..+|||||||||+|+..+ .+.||||+|+|+.+|++...+.. ++..++++||+||+++|++|||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~-~~~~~i~~ai~~a~~~g~~VIN 111 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRG-CSQLDLARAINLALEQGAHIIN 111 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCC-CCHHHHHHHHHHHHHCCCCEEE
Confidence 123456789999999999987532 15899999999999999876531 3467899999999999999999
Q ss_pred ECcCCCCC-CCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeee
Q 046220 287 LSLGFPET-TFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKS 365 (774)
Q Consensus 287 ~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~ 365 (774)
||||.... ......+..++..+.++|++||+||||+|.....+++..|++|+|||..
T Consensus 112 ~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~---------------------- 169 (267)
T cd07476 112 ISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD---------------------- 169 (267)
T ss_pred ecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec----------------------
Confidence 99997542 3345667888888999999999999999988778888899999999732
Q ss_pred ecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCC
Q 046220 366 VYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPG 445 (774)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 445 (774)
T Consensus 170 -------------------------------------------------------------------------------- 169 (267)
T cd07476 170 -------------------------------------------------------------------------------- 169 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCC
Q 046220 446 DFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPN 525 (774)
Q Consensus 446 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 525 (774)
..+.++.||+||+.. .||||+|||.+|+++.+.
T Consensus 170 -----------------------------------------~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~- 202 (267)
T cd07476 170 -----------------------------------------DDGLPLKFSNWGADY-----RKKGILAPGENILGAALG- 202 (267)
T ss_pred -----------------------------------------CCCCeeeecCCCCCC-----CCceEEecCCCceeecCC-
Confidence 112456799999864 378999999999999876
Q ss_pred CCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCC----CCHHHHHHHHHcccccccc
Q 046220 526 RPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHE----WSSAAIRSAMMTTADVLDN 586 (774)
Q Consensus 526 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~s~~~ik~~L~~TA~~~~~ 586 (774)
+.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 203 -------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 203 -------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred -------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 67999999999999999999999999887 9999999999999999854
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=390.09 Aligned_cols=290 Identities=39% Similarity=0.541 Sum_probs=218.4
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCC-c-ccccCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL-K-ISTTFDYDSPR 211 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~-~-~~~~~~~~~~~ 211 (774)
|+||+|||||+||+++||+|.+.. +.++++...++|......... . ...........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998531 133445555555443211000 0 00000112345
Q ss_pred CCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCC
Q 046220 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGF 291 (774)
Q Consensus 212 D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~ 291 (774)
|..+|||||||+|+|...+. ..+.|+||+|+|+.+|+++..+. +...+++++|+|+++++++|||||||.
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGS--GTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 68999999999999986442 22589999999999999986555 788999999999999999999999997
Q ss_pred CCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCc--cCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCC
Q 046220 292 PETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSI--ENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPE 369 (774)
Q Consensus 292 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 369 (774)
.... ..+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 130 ~~~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~---------------------- 186 (295)
T cd07474 130 SVNG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV---------------------- 186 (295)
T ss_pred CCCC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc----------------------
Confidence 5432 356777888899999999999999998765443 567889999998431000
Q ss_pred CCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcc
Q 046220 370 NLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDM 449 (774)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 449 (774)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCC-CCCCCCCCcccCeeEeCCCceEeecCCCCCC
Q 046220 450 PFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSR-GPSLRSPWILKPDILAPGVDILGAWVPNRPI 528 (774)
Q Consensus 450 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~-Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 528 (774)
........|+++ |+... ..+||||+|||.+|++++....
T Consensus 187 ------------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~~-- 226 (295)
T cd07474 187 ------------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGSG-- 226 (295)
T ss_pred ------------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCCC--
Confidence 011223344554 45543 7899999999999999987631
Q ss_pred ccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCC
Q 046220 529 ATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAG 608 (774)
Q Consensus 529 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 608 (774)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...++..+|+|
T Consensus 227 ----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G 288 (295)
T cd07474 227 ----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAG 288 (295)
T ss_pred ----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcc
Confidence 578999999999999999999999999999999999999999998754321 12245689999
Q ss_pred ccCCCCC
Q 046220 609 HINPNKA 615 (774)
Q Consensus 609 ~vn~~~A 615 (774)
+||+.+|
T Consensus 289 ~l~~~~A 295 (295)
T cd07474 289 RVDALRA 295 (295)
T ss_pred eeccccC
Confidence 9999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=389.55 Aligned_cols=269 Identities=25% Similarity=0.299 Sum_probs=189.8
Q ss_pred CccEEEEEcCCCCCCCCCCcCCCCCCCcc-ccccceecccccCcccCCceeeeeeecccccccc----CCcc------cc
Q 046220 135 SDVIVGVIDSGVWPESPSFKDDGMPPVPE-RWRGACEVGVEFNASHCNRKLIGARSFNKGLKQY----GLKI------ST 203 (774)
Q Consensus 135 ~gVvVgVIDtGid~~Hp~f~d~~~~~~~~-~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~----~~~~------~~ 203 (774)
|+|+|||||||||++||+|+++.+....+ ..+|....+.+|... +++++|...+... +... ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcccc------ccCeeccCCcccccccccCcccccccccc
Confidence 68999999999999999998752221110 112222222222221 2344444321100 0000 00
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
..+...+.+..+|||||||||+|...++.+ +.||||+|+|+.+|++.... ....++++||+||+++|++
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~---~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGD---ERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCC---cCHHHHHHHHHHHHHCCCc
Confidence 112234557899999999999998654322 58999999999999986544 6778999999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCC---cc--------CCCCceEEecccccCcceeEEE
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYS---IE--------NGAPWITTVGAGTVDREFAARV 352 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~ 352 (774)
|||||||..... ....+..++..+.++|+++|+||||+|..... ++ ...+.+|+|||....
T Consensus 144 IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------- 215 (291)
T cd07483 144 VINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------- 215 (291)
T ss_pred EEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc-------
Confidence 999999975322 23456777778899999999999999854221 11 122344444442100
Q ss_pred EeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEE
Q 046220 353 TLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432 (774)
Q Consensus 353 ~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~ 432 (774)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeE
Q 046220 433 IISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDIL 512 (774)
Q Consensus 433 i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 512 (774)
.....++.||++|+. +|||.
T Consensus 216 -----------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~ 235 (291)
T cd07483 216 -----------------------------------------------------YENNLVANFSNYGKK-------NVDVF 235 (291)
T ss_pred -----------------------------------------------------CCcccccccCCCCCC-------ceEEE
Confidence 011246889999974 35999
Q ss_pred eCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 513 APGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 513 APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 236 APG~~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 236 APGERIYSTTPD--------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eCCCCeEeccCc--------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999775 68999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=376.21 Aligned_cols=237 Identities=27% Similarity=0.340 Sum_probs=191.6
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCC
Q 046220 137 VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGH 216 (774)
Q Consensus 137 VvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gH 216 (774)
|+|||||||||++||+|.++. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999997431 11111110 124567899
Q ss_pred chhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCC-CCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 217 GTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDT-LKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 217 GThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
||||||||+|...+. .||||+|+|+.+|++...+. ..++..++++||+||++.|++|||||||...
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999985321 69999999999999986431 1167788999999999999999999999742
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCc
Q 046220 296 FDENPIAIGAFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVS 374 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 374 (774)
...+..++.++.++|++||+||||+|+.. ..+++..+++|+|++.+
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------- 152 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------- 152 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec-------------------------------
Confidence 34667777889999999999999999753 45667778888888632
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEE
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTV 454 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 454 (774)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCC
Q 046220 455 NLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDI 534 (774)
Q Consensus 455 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 534 (774)
..+.+++||++|+.. ||.|||.+|+++.+.
T Consensus 153 --------------------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------- 182 (239)
T cd05561 153 --------------------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------- 182 (239)
T ss_pred --------------------------------CCCCccccCCCCCcc--------eEEccccceecccCC----------
Confidence 123567899999876 999999999997665
Q ss_pred ccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCC
Q 046220 535 GKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAG 608 (774)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 608 (774)
+.|..++|||||||||||++|||+|++| +++++||++|++||+++. .+..+..||||
T Consensus 183 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 183 ----GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred ----CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 6899999999999999999999999999 999999999999999873 34555689998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=388.29 Aligned_cols=223 Identities=28% Similarity=0.267 Sum_probs=166.8
Q ss_pred CCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcC
Q 046220 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290 (774)
Q Consensus 211 ~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG 290 (774)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++......+...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985432 225899999999999998754321123467899999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHH-HHcCCcEEEEccCCCCCCCCCcc--C-CCCceEEecccccCcceeEEEEeCCceEEEeeeee
Q 046220 291 FPETTFDENPIAIGAFA-ALKKGIFVACSAGNSGPRPYSIE--N-GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSV 366 (774)
Q Consensus 291 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~--~-~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~ 366 (774)
..........+..++.+ +.++|+++|+||||+|+...++. + ..+.+|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 86432222233334433 45689999999999998766543 2 46899999985321110000
Q ss_pred cCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCC
Q 046220 367 YPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGD 446 (774)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 446 (774)
| . .
T Consensus 319 -------------y--------------------------~--~------------------------------------ 321 (412)
T cd04857 319 -------------Y--------------------------S--L------------------------------------ 321 (412)
T ss_pred -------------c--------------------------c--c------------------------------------
Confidence 0 0 0
Q ss_pred CcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCC
Q 046220 447 FDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNR 526 (774)
Q Consensus 447 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 526 (774)
.....+.++.||||||+.+ +.+||||+|||+.|.+.-....
T Consensus 322 -------------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p~~~~ 362 (412)
T cd04857 322 -------------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVPNWTL 362 (412)
T ss_pred -------------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCcEEEcccCCC
Confidence 0012356889999999997 8999999999999987522111
Q ss_pred CCccccCCccccccceecccccchhHHHHHHHHHHHH----hcCCCCHHHHHHHHHcccccc
Q 046220 527 PIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----THHEWSSAAIRSAMMTTADVL 584 (774)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~ 584 (774)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 ------------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 ------------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ------------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 5789999999999999999999975 478999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=377.97 Aligned_cols=246 Identities=29% Similarity=0.373 Sum_probs=196.7
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
||+||||||||+++||+|....+ .++.++.+.++|.++.. ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC------------CCCCCCCC
Confidence 79999999999999999952210 13446777777765420 01357889
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||||+|+.. +.+.||||+|+|+.+|+............+++.|++++.+.|++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999753 22589999999999999765432123556788999999999999999999986432
Q ss_pred CC------------CcHHHHHHHHHHcCCcEEEEccCCCCCC---CCCccCCCCceEEecccccCcceeEEEEeCCceEE
Q 046220 296 FD------------ENPIAIGAFAALKKGIFVACSAGNSGPR---PYSIENGAPWITTVGAGTVDREFAARVTLGNEELS 360 (774)
Q Consensus 296 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (774)
.. ...+..++..+.++|+++|+||||+|.. ....+...+++|+|||..
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~----------------- 181 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD----------------- 181 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-----------------
Confidence 11 2356777888899999999999999977 345667788899998731
Q ss_pred EeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC
Q 046220 361 VIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ 440 (774)
Q Consensus 361 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 440 (774)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEe
Q 046220 441 NLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILG 520 (774)
Q Consensus 441 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 520 (774)
..+.++.||++||..+ +++||||+|||.+|++
T Consensus 182 ----------------------------------------------~~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~~~ 213 (261)
T cd07493 182 ----------------------------------------------ANGNKASFSSIGPTAD--GRLKPDVMALGTGIYV 213 (261)
T ss_pred ----------------------------------------------cCCCCCccCCcCCCCC--CCcCCceEecCCCeEE
Confidence 1235678999999886 7999999999999998
Q ss_pred ecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 521 AWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 214 ~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 214 INGD--------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EcCC--------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 5443 67899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=375.50 Aligned_cols=247 Identities=34% Similarity=0.396 Sum_probs=194.6
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
|+||+|||||+||+++||+|.+. |++.... .+...+.+.+. ......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~----------~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDP----------VGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccC----------CCCCCCCCCC
Confidence 89999999999999999999864 1110000 00000001110 1112346678
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh------------CC
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA------------DG 281 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~------------~g 281 (774)
.+|||||||||+|..... ...||||+|+|+.+|+++..+ +...+++++++++++ .|
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG---GNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC---CcHHHHHHHHHHHHhcccccccccccccC
Confidence 899999999999875332 137999999999999998777 788999999999975 68
Q ss_pred CcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCce
Q 046220 282 VDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEE 358 (774)
Q Consensus 282 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 358 (774)
++|||||||.... ....+..++..+.++|++||+||||++.... ..+...|++|+||+.+
T Consensus 120 ~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~--------------- 182 (264)
T cd07481 120 PDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD--------------- 182 (264)
T ss_pred CeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC---------------
Confidence 9999999998643 2345566667788899999999999986543 2556778888888732
Q ss_pred EEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC
Q 046220 359 LSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCce
Q 046220 439 RQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDI 518 (774)
Q Consensus 439 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 518 (774)
..+.++.||++||... +++||||+|||.+|
T Consensus 183 ------------------------------------------------~~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i 212 (264)
T cd07481 183 ------------------------------------------------RNDVLADFSSRGPSTY--GRIKPDISAPGVNI 212 (264)
T ss_pred ------------------------------------------------CCCCCccccCCCCCCC--CCcCceEEECCCCe
Confidence 1245678999999986 78999999999999
Q ss_pred EeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCC--CCHHHHHHHHHcccc
Q 046220 519 LGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHE--WSSAAIRSAMMTTAD 582 (774)
Q Consensus 519 ~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--~s~~~ik~~L~~TA~ 582 (774)
.++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 213 ~s~~~~--------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 213 RSAVPG--------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEecCC--------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999876 67899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=372.44 Aligned_cols=264 Identities=26% Similarity=0.265 Sum_probs=202.0
Q ss_pred CCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccC
Q 046220 126 GLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTF 205 (774)
Q Consensus 126 ~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~ 205 (774)
.+|..+++|+||+|||||||||++||+|.+..... ++ ..+...+.... +...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~------------~~~~~~~~~~~---~~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GY------------DPAVNGYNFVP---NVGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Cc------------ccccCCccccc---ccCC
Confidence 37999999999999999999999999998651100 00 00001100000 0001
Q ss_pred CCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEE
Q 046220 206 DYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVM 285 (774)
Q Consensus 206 ~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVI 285 (774)
......|..||||||||||+|...+....-|.+ .+.|+||+|+|+.+|++...+. ....+++++|++|++.|++||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~g~~Vi 128 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYY--VGDDAVAAAIVYAADNGAVIL 128 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHcCCcEE
Confidence 123355778999999999999765433221221 2357999999999999987654 788889999999999999999
Q ss_pred EECcCCCCCCCCCcHHHHHHHHHHcC-------CcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCce
Q 046220 286 SLSLGFPETTFDENPIAIGAFAALKK-------GIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEE 358 (774)
Q Consensus 286 n~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 358 (774)
|||||......+...+..++..+.++ |++||+||||++......++..+++|+|++.+
T Consensus 129 n~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~--------------- 193 (273)
T cd07485 129 QNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD--------------- 193 (273)
T ss_pred EecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc---------------
Confidence 99999865444556677777788887 99999999999988777788888999999732
Q ss_pred EEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC
Q 046220 359 LSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
T Consensus 194 -------------------------------------------------------------------------------- 193 (273)
T cd07485 194 -------------------------------------------------------------------------------- 193 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCC-c
Q 046220 439 RQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV-D 517 (774)
Q Consensus 439 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~ 517 (774)
..+.++.||++|+.. ||.|||. .
T Consensus 194 ------------------------------------------------~~~~~~~~S~~g~~~--------~i~apG~~~ 217 (273)
T cd07485 194 ------------------------------------------------TNDNKASFSNYGRWV--------DIAAPGVGT 217 (273)
T ss_pred ------------------------------------------------CCCCcCccccCCCce--------EEEeCCCCc
Confidence 123567899999876 9999999 8
Q ss_pred eEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCC-CCHHHHHHHHHcc
Q 046220 518 ILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHE-WSSAAIRSAMMTT 580 (774)
Q Consensus 518 I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-~s~~~ik~~L~~T 580 (774)
|+++++..... .. +.|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 218 i~~~~~~~~~~-------~~-~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 218 ILSTVPKLDGD-------GG-GNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccccCC-------CC-CCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 98887653210 01 57899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=371.90 Aligned_cols=331 Identities=25% Similarity=0.384 Sum_probs=257.3
Q ss_pred CCCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCC-C--CC-----------C-CCceEEEec---cceeeEEEEeCHHH
Q 046220 28 GDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSS-P--DG-----------D-APTHLYTYN---HVVDGFSAVLSQTH 89 (774)
Q Consensus 28 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~-----------~-~~~~~~~y~---~~~~g~s~~~~~~~ 89 (774)
..+.+|||.|++....+..+.|.+|.+........ . ++ . -..+.+.|. .+++|..-..+.+-
T Consensus 78 ~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 35689999999766655666777776654332211 1 00 0 011444443 37888888899999
Q ss_pred HHhhcCCCCeEEEEeceeeeccc-----CCCCCcccccccCC-------CCc----CCCCCCccEEEEEcCCCCCCCCCC
Q 046220 90 LKNLQKMPGHHGTYLETFGHLHT-----THTPKFVGLKKHAG-------LWP----AAGFGSDVIVGVIDSGVWPESPSF 153 (774)
Q Consensus 90 ~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~w~----~~~~G~gVvVgVIDtGid~~Hp~f 153 (774)
+..++.+|-++.++++..++... .+....|||.++.. .|- .-..|+||...|+||||+.+||+|
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999998877654 33344567655321 121 223699999999999999999999
Q ss_pred cCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCcc
Q 046220 154 KDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNAN 233 (774)
Q Consensus 154 ~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~ 233 (774)
.++ +.| |..+.. .....|++||||||||+|++..
T Consensus 238 egR------a~w------Ga~i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt----- 271 (501)
T KOG1153|consen 238 EGR------AIW------GATIPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT----- 271 (501)
T ss_pred ccc------eec------ccccCC-----------------------------CCcccccCCCcceeeeeeeccc-----
Confidence 865 223 222110 1235689999999999999884
Q ss_pred ccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC---------CCcEEEECcCCCCCCCCCcHHHHH
Q 046220 234 YFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD---------GVDVMSLSLGFPETTFDENPIAIG 304 (774)
Q Consensus 234 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~---------gvdVIn~SlG~~~~~~~~~~~~~a 304 (774)
.|||.+++|+++||++++|. ++.+++++++|++++. +..|.|||+|+. ..-++..|
T Consensus 272 ---------~GvAK~s~lvaVKVl~~dGs--Gt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~----~S~aLn~A 336 (501)
T KOG1153|consen 272 ---------FGVAKNSNLVAVKVLRSDGS--GTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF----RSAALNMA 336 (501)
T ss_pred ---------cccccccceEEEEEeccCCc--EeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc----ccHHHHHH
Confidence 79999999999999999998 9999999999999986 468999999995 34567788
Q ss_pred HHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccC
Q 046220 305 AFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYG 383 (774)
Q Consensus 305 ~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~ 383 (774)
+.+|.+.||++++||||+..+. .+.|+.+..+|||||++.
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------------------- 377 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------------------------------- 377 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------------------------------
Confidence 8899999999999999998764 467788899999998641
Q ss_pred CCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHH
Q 046220 384 NRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVK 463 (774)
Q Consensus 384 ~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~ 463 (774)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCcccccccee
Q 046220 464 KYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYAL 543 (774)
Q Consensus 464 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~ 543 (774)
.+.+|.||+||++. ||.|||++|+|+|.+.. ....+
T Consensus 378 ------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~------------~at~i 413 (501)
T KOG1153|consen 378 ------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN------------NATAI 413 (501)
T ss_pred ------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCc------------cchhe
Confidence 24789999999999 99999999999998853 46788
Q ss_pred cccccchhHHHHHHHHHHHHhcCC---------CCHHHHHHHHHcccc
Q 046220 544 ESGTSMSCPHAAGIATLLKATHHE---------WSSAAIRSAMMTTAD 582 (774)
Q Consensus 544 ~sGTSmAaP~VAG~aALl~~~~P~---------~s~~~ik~~L~~TA~ 582 (774)
.||||||+|||||++|..++.+|. .+|.++|..+..-..
T Consensus 414 lSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 414 LSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred eecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999999999999999999999883 378888887776554
|
|
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=366.00 Aligned_cols=257 Identities=32% Similarity=0.483 Sum_probs=203.6
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
|+||+|+|||+||+++||+|.+.... .+.+... ........|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~----------~~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNT----------VNGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------ccccccc----------ccCCCCCCCC
Confidence 89999999999999999999854211 0011110 0112345677
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC----CCcEEEECc
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD----GVDVMSLSL 289 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~----gvdVIn~Sl 289 (774)
.+|||||||||+|...+. .+.+.||||+|+|+.+|+++..+. ....++++||+|+++. +++||||||
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGS--GSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCC--ccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 899999999999986542 122589999999999999998876 7888999999999998 999999999
Q ss_pred CCCCC-CCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC--CccCCCCceEEecccccCcceeEEEEeCCceEEEeeeee
Q 046220 290 GFPET-TFDENPIAIGAFAALKKGIFVACSAGNSGPRPY--SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSV 366 (774)
Q Consensus 290 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~ 366 (774)
|.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||...+..
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------- 175 (264)
T cd07487 115 GAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------- 175 (264)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------------
Confidence 98653 445678888888999999999999999998765 55677889999998432111
Q ss_pred cCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCC
Q 046220 367 YPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGD 446 (774)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 446 (774)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCC
Q 046220 447 FDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNR 526 (774)
Q Consensus 447 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 526 (774)
....++.||++||+.+ +++||||+|||.+|+++.+...
T Consensus 176 ----------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~ 213 (264)
T cd07487 176 ----------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGG 213 (264)
T ss_pred ----------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEecccccc
Confidence 0124678999999986 7999999999999999765431
Q ss_pred CCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 527 PIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
... .... +.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 214 ~~~----~~~~-~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 214 NPG----AGVG-SGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccC----CCCC-CceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 110 0111 67899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=360.52 Aligned_cols=233 Identities=33% Similarity=0.477 Sum_probs=194.7
Q ss_pred CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCC
Q 046220 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206 (774)
Q Consensus 127 ~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~ 206 (774)
.|..+++|+||+|||||+||+++||+|.++ +...+.|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 677789999999999999999999999743 1112222221
Q ss_pred CCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC-----C
Q 046220 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD-----G 281 (774)
Q Consensus 207 ~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~-----g 281 (774)
....|..+|||||||||+|.. .||||+|+|+.+|+++..+. ...++++++|+++++. +
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~--~~~~~~~~ai~~~~~~~~~~~~ 119 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGS--GTLSGIIAGLEWVANDATKRGK 119 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCC--cCHHHHHHHHHHHHhcccccCC
Confidence 115578899999999999863 69999999999999998765 7888999999999987 4
Q ss_pred CcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEE
Q 046220 282 VDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELS 360 (774)
Q Consensus 282 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (774)
++|||||||... ...+..++.++.++|+++|+||||+|... ...++..|++|+||+.+
T Consensus 120 ~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~----------------- 178 (255)
T cd04077 120 PAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATD----------------- 178 (255)
T ss_pred CeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccC-----------------
Confidence 899999999864 45667777789999999999999999765 45667788999999742
Q ss_pred EeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC
Q 046220 361 VIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ 440 (774)
Q Consensus 361 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 440 (774)
T Consensus 179 -------------------------------------------------------------------------------- 178 (255)
T cd04077 179 -------------------------------------------------------------------------------- 178 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEe
Q 046220 441 NLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILG 520 (774)
Q Consensus 441 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 520 (774)
..+.++.||++||.. ||+|||.+|.+
T Consensus 179 ----------------------------------------------~~~~~~~~S~~g~~~--------~i~apG~~i~~ 204 (255)
T cd04077 179 ----------------------------------------------SDDARASFSNYGSCV--------DIFAPGVDILS 204 (255)
T ss_pred ----------------------------------------------CCCCccCcccCCCCC--------cEEeCCCCeEe
Confidence 113467899999987 89999999999
Q ss_pred ecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccc
Q 046220 521 AWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADV 583 (774)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 583 (774)
+..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 205 ~~~~~~------------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 205 AWIGSD------------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cccCCC------------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 876421 688999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=361.25 Aligned_cols=242 Identities=33% Similarity=0.436 Sum_probs=202.1
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
...+|..+ +|+||+|||||+||+++||+|... ++...++|.++
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~---------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN---------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC----------
Confidence 35689888 999999999999999999998422 22222333322
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
...+.|..+|||||||||++...++. .+.|+||+|+|+.+|+++..+. +...+++++|+++++.|++
T Consensus 61 ---~~~~~d~~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 61 ---DSDAMDDNGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGS--GSLADIANGIRYAADKGAK 127 (260)
T ss_pred ---CCCCCCCCCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHCCCe
Confidence 12356788999999999998754432 2589999999999999987765 7888999999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEee
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g 363 (774)
|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~-------------------- 184 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATD-------------------- 184 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeC--------------------
Confidence 9999999863 45567777778889999999999999988888888999999999732
Q ss_pred eeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCC
Q 046220 364 KSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLF 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 443 (774)
T Consensus 185 -------------------------------------------------------------------------------- 184 (260)
T cd07484 185 -------------------------------------------------------------------------------- 184 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecC
Q 046220 444 PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV 523 (774)
Q Consensus 444 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 523 (774)
..+..+.||++|+.. |++|||.+|+++.+
T Consensus 185 -------------------------------------------~~~~~~~~s~~g~~~--------~~~apG~~i~~~~~ 213 (260)
T cd07484 185 -------------------------------------------QDDKRASFSNYGKWV--------DVSAPGGGILSTTP 213 (260)
T ss_pred -------------------------------------------CCCCcCCcCCCCCCc--------eEEeCCCCcEeecC
Confidence 113457899999876 99999999999876
Q ss_pred CCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccc
Q 046220 524 PNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584 (774)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 584 (774)
. +.|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 214 ~--------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 214 D--------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred C--------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 5 6789999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=370.22 Aligned_cols=265 Identities=24% Similarity=0.200 Sum_probs=185.5
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCc
Q 046220 138 IVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHG 217 (774)
Q Consensus 138 vVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHG 217 (774)
+|||||||||.+||+|.+.- .....+... .....|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999997431 100111100 01156889999
Q ss_pred hhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCC--CCCCchHHHHHHHHHHHhCC---CcEEEECcCCC
Q 046220 218 THTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYND--TLKAAAVDVLAGMDQAIADG---VDVMSLSLGFP 292 (774)
Q Consensus 218 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~~~di~~ai~~a~~~g---vdVIn~SlG~~ 292 (774)
|||||||++....+ ....|+||+++|+.+|++...+ .......++++||+|+++.+ ++|||||||..
T Consensus 42 T~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 42 TAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 99999999764331 1247999999999999999864 11156778999999999853 59999999986
Q ss_pred CCCCCC--cHHHHHHH-HHHcCCcEEEEccCCCCCCCCC------------ccCCCCceEEecccccCcceeEEEEeCCc
Q 046220 293 ETTFDE--NPIAIGAF-AALKKGIFVACSAGNSGPRPYS------------IENGAPWITTVGAGTVDREFAARVTLGNE 357 (774)
Q Consensus 293 ~~~~~~--~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~~~g 357 (774)
...... ..+..++. .+.++|++||+||||+|..... .++.++++|+|||.+.+......
T Consensus 114 ~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~------ 187 (291)
T cd04847 114 LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR------ 187 (291)
T ss_pred CCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc------
Confidence 532221 23444443 3568999999999999977543 24567899999986533220000
Q ss_pred eEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC
Q 046220 358 ELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD 437 (774)
Q Consensus 358 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~ 437 (774)
. ..+
T Consensus 188 -------------------------------------------------s--~~~------------------------- 191 (291)
T cd04847 188 -------------------------------------------------A--RYS------------------------- 191 (291)
T ss_pred -------------------------------------------------c--ccc-------------------------
Confidence 0 000
Q ss_pred CCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCc
Q 046220 438 SRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVD 517 (774)
Q Consensus 438 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 517 (774)
.......+.||++||... +.+||||+|||++
T Consensus 192 -----------------------------------------------~~~~~~~~~fs~~Gp~~~--~~~KPDl~apG~~ 222 (291)
T cd04847 192 -----------------------------------------------AVGPAPAGATTSSGPGSP--GPIKPDVVAFGGN 222 (291)
T ss_pred -----------------------------------------------ccccccCCCccccCCCCC--CCcCCcEEeeCCc
Confidence 000112334999999986 8999999999999
Q ss_pred eEeecCCCCCCc-----cccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 518 ILGAWVPNRPIA-----TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 518 I~sa~~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
|.+......... ........ ..|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 223 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 223 LAYDPSGNAADGDLSLLTTLSSPSG-GGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeecCCCCCccCcceeeecccCCCC-CcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 987644211000 00000011 68999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=363.24 Aligned_cols=207 Identities=28% Similarity=0.329 Sum_probs=167.1
Q ss_pred CCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHH----------
Q 046220 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI---------- 278 (774)
Q Consensus 209 ~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~---------- 278 (774)
...+..+|||||||||+|...++.. +.||||+|+|+.+|+++..+ .+.+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~~--------~~GvAp~a~i~~~~v~~~~~---~~~~~i~~a~~~a~~~~~~~~~~~ 134 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGVG--------VAGVAWGARILPVRVLGKCG---GTLSDIVDGMRWAAGLPVPGVPVN 134 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCCC--------ceeecCCCeEEEEEEecCCC---CcHHHHHHHHHHHhccCcCCCccc
Confidence 3556789999999999998653322 48999999999999998887 68899999999998
Q ss_pred hCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCc
Q 046220 279 ADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNE 357 (774)
Q Consensus 279 ~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 357 (774)
.++++|||||||..... ...+..++..+.++|++||+||||++... ...+...+++|+|||.+
T Consensus 135 ~~~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------- 198 (285)
T cd07496 135 PNPAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD-------------- 198 (285)
T ss_pred CCCCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC--------------
Confidence 45789999999986432 45677788889999999999999999876 56677788999999732
Q ss_pred eEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC
Q 046220 358 ELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD 437 (774)
Q Consensus 358 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~ 437 (774)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T cd07496 199 -------------------------------------------------------------------------------- 198 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCc
Q 046220 438 SRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVD 517 (774)
Q Consensus 438 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 517 (774)
..+.++.||++||.. ||.|||++
T Consensus 199 -------------------------------------------------~~~~~~~~S~~g~~v--------di~apG~~ 221 (285)
T cd07496 199 -------------------------------------------------LRGQRASYSNYGPAV--------DVSAPGGD 221 (285)
T ss_pred -------------------------------------------------CCCCcccccCCCCCC--------CEEeCCCC
Confidence 123567899999976 99999999
Q ss_pred eEeecCCCCCCc--cccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcc
Q 046220 518 ILGAWVPNRPIA--TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580 (774)
Q Consensus 518 I~sa~~~~~~~~--~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 580 (774)
|.++........ ........ ..|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 222 CASDVNGDGYPDSNTGTTSPGG-STYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccCCCCccccccccccCCCC-CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 998866432110 00000111 578899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=355.58 Aligned_cols=253 Identities=33% Similarity=0.402 Sum_probs=187.7
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
||+|||||||||++||+|.+. +...+.|..+. ..+.....|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11112222110 011234557789
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||||+|+..+ +...||||+|+|+.+|++...+ +..++++++|+|+++.+++|||||||.....
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~---~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG---GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC---CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 999999999998642 2247999999999999998876 7889999999999999999999999986533
Q ss_pred CCCcHHHHHHHHHHc-CCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCc
Q 046220 296 FDENPIAIGAFAALK-KGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVS 374 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 374 (774)
.+.+..+.....+ +|++||+||||+|......++..+++|+|||.+.+......
T Consensus 113 --~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~----------------------- 167 (254)
T cd07490 113 --EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF----------------------- 167 (254)
T ss_pred --CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc-----------------------
Confidence 4556555555554 69999999999998877788889999999986432210000
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEE
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTV 454 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 454 (774)
. .++
T Consensus 168 --------------------------------s--~~g------------------------------------------ 171 (254)
T cd07490 168 --------------------------------S--SFG------------------------------------------ 171 (254)
T ss_pred --------------------------------c--CCc------------------------------------------
Confidence 0 000
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCC
Q 046220 455 NLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDI 534 (774)
Q Consensus 455 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 534 (774)
......++.+|... ....||||+|||.+|+++..... ..
T Consensus 172 ----------------------------------~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~~------~~ 210 (254)
T cd07490 172 ----------------------------------SSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGAN------GD 210 (254)
T ss_pred ----------------------------------ccccccccCCCCCc-cCCcCceEEeccCCeEccccCCC------CC
Confidence 00112223333322 25689999999999998652211 01
Q ss_pred ccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 535 GKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 211 ----~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 211 ----GQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ----CCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=360.38 Aligned_cols=154 Identities=25% Similarity=0.325 Sum_probs=119.3
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
...+|+++++|+||+||||||||+..|| |...++ .+. + .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~---------------~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVR---------------V----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cce---------------e----ecCCC----------
Confidence 3678999999999999999999999998 653211 000 0 00000
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||++++++
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~------~~~~~~~ai~~a~~~g~d 106 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP------DLVNSVGAFKKAISLSPD 106 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC------CcHHHHHHHHHHHhcCCC
Confidence 0123567889999999865 69999999999999863 456789999999999999
Q ss_pred EEEECcCCCCCCC----------CCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccc
Q 046220 284 VMSLSLGFPETTF----------DENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGT 343 (774)
Q Consensus 284 VIn~SlG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~ 343 (774)
|||||||...... ....+..++.+|.++|++||+||||++. .+++..|++|+|||++
T Consensus 107 VIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~ 173 (298)
T cd07494 107 IISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVF 173 (298)
T ss_pred EEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEe
Confidence 9999999853211 1235777888899999999999999874 5688999999999854
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=357.63 Aligned_cols=279 Identities=29% Similarity=0.322 Sum_probs=199.7
Q ss_pred CCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCC
Q 046220 130 AAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDS 209 (774)
Q Consensus 130 ~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~ 209 (774)
++++|+||+|||||||||++||+|.+... .+.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 57899999999999999999999975421 0000 12233332222211 1
Q ss_pred CCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECc
Q 046220 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289 (774)
Q Consensus 210 ~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~Sl 289 (774)
..|..+|||||||||+|...+... ...+.||||+|+|+.+|+++..+. .....++..+++++.+.+++||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGN-LSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCcc-ccCCccHHHHHHHHHHhCCEEEeccC
Confidence 227899999999999998755421 112589999999999999887652 14566788999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHH-c-CCcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCceEEEeee
Q 046220 290 GFPETTFDENPIAIGAFAAL-K-KGIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGK 364 (774)
Q Consensus 290 G~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~ 364 (774)
|......+ .....++.++. + +|++||+||||+|.... ..+...+++|+|||++.+.....
T Consensus 124 G~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~-------------- 188 (293)
T cd04842 124 GSPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG-------------- 188 (293)
T ss_pred CCCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc--------------
Confidence 98754212 22333333332 3 79999999999997764 66778899999998654322000
Q ss_pred eecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCC
Q 046220 365 SVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFP 444 (774)
Q Consensus 365 ~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 444 (774)
..|..
T Consensus 189 -----------------------~~~~~---------------------------------------------------- 193 (293)
T cd04842 189 -----------------------EGGLG---------------------------------------------------- 193 (293)
T ss_pred -----------------------ccccc----------------------------------------------------
Confidence 00000
Q ss_pred CCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCC
Q 046220 445 GDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVP 524 (774)
Q Consensus 445 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 524 (774)
.......++.||++||... +++||||+|||++|+++...
T Consensus 194 ---------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~~ 232 (293)
T cd04842 194 ---------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARSG 232 (293)
T ss_pred ---------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccCC
Confidence 0112356899999999986 79999999999999998754
Q ss_pred CCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC--------CCCHHHHHHHHHcccc
Q 046220 525 NRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH--------EWSSAAIRSAMMTTAD 582 (774)
Q Consensus 525 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P--------~~s~~~ik~~L~~TA~ 582 (774)
.... ..... ..|..++|||||||+|||++|||+|++| .+++.+||++|++||+
T Consensus 233 ~~~~----~~~~~-~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 233 GGGI----GDTSD-SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCC----CCCCh-hheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 2000 00011 5788999999999999999999999854 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=347.91 Aligned_cols=240 Identities=29% Similarity=0.324 Sum_probs=188.9
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCC
Q 046220 137 VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGH 216 (774)
Q Consensus 137 VvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gH 216 (774)
|+|||||+||+++||+|.+.. ++...+.+... .....|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-------------~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-------------NDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-------------CCCCCCCCCC
Confidence 789999999999999998520 01111111111 1135678899
Q ss_pred chhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCC-C
Q 046220 217 GTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPET-T 295 (774)
Q Consensus 217 GThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~-~ 295 (774)
||||||||+|+..+.. .+.||||+|+|+.+|+++..+. +...++.++++|+++.+++|||||||.... .
T Consensus 43 GT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~ 112 (242)
T cd07498 43 GTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGY--AYWSDIAQAITWAADNGADVISNSWGGSDSTE 112 (242)
T ss_pred HHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc
Confidence 9999999999864322 2589999999999999987764 788999999999999999999999998643 2
Q ss_pred CCCcHHHHHHHHHHc-CCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCc
Q 046220 296 FDENPIAIGAFAALK-KGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVS 374 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 374 (774)
.....+..++..+.+ +|+++|+||||+|......++..+++|+|||.+
T Consensus 113 ~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~------------------------------- 161 (242)
T cd07498 113 SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATD------------------------------- 161 (242)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeC-------------------------------
Confidence 335567777777888 999999999999988777788899999999732
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEE
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTV 454 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 454 (774)
T Consensus 162 -------------------------------------------------------------------------------- 161 (242)
T cd07498 162 -------------------------------------------------------------------------------- 161 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCC
Q 046220 455 NLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDI 534 (774)
Q Consensus 455 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 534 (774)
..+.+++||++||.. |++|||.++........... +
T Consensus 162 --------------------------------~~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~----~ 197 (242)
T cd07498 162 --------------------------------SNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAG----D 197 (242)
T ss_pred --------------------------------CCCCccCcCCCCCCe--------EEEeCcCCcccCCccccccc----c
Confidence 113467899999987 99999999988754321110 0
Q ss_pred ccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcc
Q 046220 535 GKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580 (774)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 580 (774)
... +.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 198 ~~~-~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 198 YPG-GGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCC-CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111 678899999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=355.75 Aligned_cols=265 Identities=30% Similarity=0.355 Sum_probs=184.4
Q ss_pred cCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCC
Q 046220 129 PAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYD 208 (774)
Q Consensus 129 ~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~ 208 (774)
..+++|+||+|||||+|||.+||+|.+.. +..++|.+. .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC--------------C
Confidence 35789999999999999999999997531 111222221 1
Q ss_pred CCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEEC
Q 046220 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288 (774)
Q Consensus 209 ~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~S 288 (774)
.+.|..||||||||||+|+..++ ...||||+|+|+.+|++...+. +...++++||+||++.|++|||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~~---------~~~GvAp~a~i~~~~~~~~~~~--~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVPG---------PRYGVARGAEIALIGKVLGDGG--GGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCCC---------cccccCCCCEEEEEEEEeCCCC--CcHHHHHHHHHHHHHcCCCEEEec
Confidence 24678899999999999976442 1379999999999999987665 777889999999999999999999
Q ss_pred cCCCCCCC----------CCcHHHHHHHHH---------------HcCCcEEEEccCCCCCCCCCcc-----CCCCceEE
Q 046220 289 LGFPETTF----------DENPIAIGAFAA---------------LKKGIFVACSAGNSGPRPYSIE-----NGAPWITT 338 (774)
Q Consensus 289 lG~~~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~~p~vit 338 (774)
||...... ....+......+ .++|++||+||||+|....... ...+.+++
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~ 189 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMG 189 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccE
Confidence 99854111 111222222233 6789999999999986433211 01112222
Q ss_pred ecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhH
Q 046220 339 VGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVS 418 (774)
Q Consensus 339 VgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~ 418 (774)
|++.
T Consensus 190 V~~V---------------------------------------------------------------------------- 193 (297)
T cd07480 190 VAAV---------------------------------------------------------------------------- 193 (297)
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 2210
Q ss_pred HHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCC
Q 046220 419 QQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRG 498 (774)
Q Consensus 419 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 498 (774)
...+....|+++.
T Consensus 194 -------------------------------------------------------------------~~~~~~~~~~~~~ 206 (297)
T cd07480 194 -------------------------------------------------------------------GALGRTGNFSAVA 206 (297)
T ss_pred -------------------------------------------------------------------CCCCCCCCccccC
Confidence 0111222333333
Q ss_pred CCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046220 499 PSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMM 578 (774)
Q Consensus 499 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~ 578 (774)
+. ...||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+
T Consensus 207 ~~----~~~~~dv~ApG~~i~s~~~~--------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~ 268 (297)
T cd07480 207 NF----SNGEVDIAAPGVDIVSAAPG--------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQ 268 (297)
T ss_pred CC----CCCceEEEeCCCCeEeecCC--------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 32 23578999999999998776 7899999999999999999999999999999888888887
Q ss_pred ccccccccccccccccCCCccCCCcccCCCccCCC
Q 046220 579 TTADVLDNAYDMIADISTGVAGTPLDFGAGHINPN 613 (774)
Q Consensus 579 ~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~ 613 (774)
.......... ......+..+|+|++++.
T Consensus 269 ~~l~~~~~~~-------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 269 ARLTAARTTQ-------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHhhcccCC-------CCCCCChhhcCCceeecC
Confidence 4322210000 022344568999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=346.58 Aligned_cols=252 Identities=29% Similarity=0.379 Sum_probs=191.0
Q ss_pred CccEEEEEcCCCCCCCCCCcCCCCCCC-ccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 135 SDVIVGVIDSGVWPESPSFKDDGMPPV-PERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 135 ~gVvVgVIDtGid~~Hp~f~d~~~~~~-~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
+||+|||||||||++||+|.++..... ...+.+....+. .|.+....+ +...+..++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~----~~~~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGN---------------GYVDDIYGW----NFVNNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCC---------------CcccCCCcc----cccCCCCCCCCC
Confidence 689999999999999999987522110 000111111111 111110000 001123456788
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCC
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~ 293 (774)
.+|||||||||+|...++.. +.||||+|+|+.+|++...+. ++..+++++|+++++.+++|||+|||...
T Consensus 63 ~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~--~~~~~~~~a~~~a~~~~~~vin~S~G~~~ 132 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGS--GTTSDAIKAIDYAVDMGAKIINNSWGGGG 132 (259)
T ss_pred CCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCC--cCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 99999999999998654322 589999999999999988775 78899999999999999999999999863
Q ss_pred CCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC---CCccC--CCCceEEecccccCcceeEEEEeCCceEEEeeeeecC
Q 046220 294 TTFDENPIAIGAFAALKKGIFVACSAGNSGPRP---YSIEN--GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYP 368 (774)
Q Consensus 294 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~ 368 (774)
. ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+
T Consensus 133 ~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~------------------------- 184 (259)
T cd07473 133 P---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD------------------------- 184 (259)
T ss_pred C---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC-------------------------
Confidence 3 56777788889999999999999998762 23333 346777777632
Q ss_pred CCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCc
Q 046220 369 ENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFD 448 (774)
Q Consensus 369 ~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 448 (774)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCC
Q 046220 449 MPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPI 528 (774)
Q Consensus 449 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 528 (774)
..+.++.||++||. +||+.|||.++++..+.
T Consensus 185 --------------------------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---- 215 (259)
T cd07473 185 --------------------------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG---- 215 (259)
T ss_pred --------------------------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC----
Confidence 12345679999986 35999999999997654
Q ss_pred ccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 529 ATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 529 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 216 ----------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 ----------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ----------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=349.77 Aligned_cols=244 Identities=20% Similarity=0.200 Sum_probs=173.1
Q ss_pred CCCCcCCC-CCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 125 AGLWPAAG-FGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 125 ~~~w~~~~-~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
..+|+... .|+||+|+|||+|||.+||+|.++... +..+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 45787744 589999999999999999999854110 0000
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh----
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA---- 279 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~---- 279 (774)
..+.|+.+|||||||||||..+ + +| +.||||+|+|+.+|+++ .++++++|.+|++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n-~---~G-----~~GvAp~a~l~~i~v~~--------~~~~~~ai~~A~~~~~~ 103 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN-G---IG-----VTGIAHGAQAAVVSSTR--------VSNTADAILDAADYLSP 103 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC-C---Cc-----eeeeccCCEEEEEEecC--------CCCHHHHHHHHHhccCC
Confidence 1145778999999999999632 1 12 48999999999999975 2345566666665
Q ss_pred CCCcEEEECcCCCCCCC------CCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCcc-------------CCCCceEEec
Q 046220 280 DGVDVMSLSLGFPETTF------DENPIAIGAFAALKKGIFVACSAGNSGPRPYSIE-------------NGAPWITTVG 340 (774)
Q Consensus 280 ~gvdVIn~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~vitVg 340 (774)
.++.+||||||...... ....+..++.++.++|+++|+||||++....... ...|++|+||
T Consensus 104 ~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~Vg 183 (277)
T cd04843 104 GDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVG 183 (277)
T ss_pred CCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEE
Confidence 45678999999864211 2334556777888999999999999986421110 1123455555
Q ss_pred ccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHH
Q 046220 341 AGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQ 420 (774)
Q Consensus 341 A~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~ 420 (774)
|++.+
T Consensus 184 A~~~~--------------------------------------------------------------------------- 188 (277)
T cd04843 184 AGSST--------------------------------------------------------------------------- 188 (277)
T ss_pred eccCC---------------------------------------------------------------------------
Confidence 52110
Q ss_pred HHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCC
Q 046220 421 LEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPS 500 (774)
Q Consensus 421 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 500 (774)
....++.||++||.
T Consensus 189 ------------------------------------------------------------------~~~~~~~fSn~G~~ 202 (277)
T cd04843 189 ------------------------------------------------------------------TGHTRLAFSNYGSR 202 (277)
T ss_pred ------------------------------------------------------------------CCCccccccCCCCc
Confidence 01136899999997
Q ss_pred CCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHH----h-cCCCCHHHHHH
Q 046220 501 LRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----T-HHEWSSAAIRS 575 (774)
Q Consensus 501 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~s~~~ik~ 575 (774)
. ||.|||++|+++............. ..|..++|||||||||||++|||++ + +|+|+++|||+
T Consensus 203 v--------di~APG~~i~s~~~~~~~~~~~~~~----~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~ 270 (277)
T cd04843 203 V--------DVYGWGENVTTTGYGDLQDLGGENQ----DYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRE 270 (277)
T ss_pred c--------ceEcCCCCeEecCCCCcccccCCCC----cceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 6 9999999999998753311000001 3457899999999999999999975 3 49999999999
Q ss_pred HHHcccc
Q 046220 576 AMMTTAD 582 (774)
Q Consensus 576 ~L~~TA~ 582 (774)
+|+.|++
T Consensus 271 ~L~~t~~ 277 (277)
T cd04843 271 LLTATGT 277 (277)
T ss_pred HHHhcCC
Confidence 9999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=336.06 Aligned_cols=227 Identities=36% Similarity=0.535 Sum_probs=187.0
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
||+|||||+||+++||+|.+. +...+.|.... .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~------------~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD------------NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC------------CCCCCCCCC
Confidence 799999999999999999753 11122222210 023557889
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||||++..... .+.|+||+|+|+.+|+++..+. +...+++++++++++.|++|||||||...
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~--~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-- 108 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGS--GTYSDIIAGIEWAIENGMDIINMSLGGPS-- 108 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHCCCCEEEECCccCC--
Confidence 9999999999976432 2589999999999999988775 67789999999999999999999999853
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCc--cCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCC
Q 046220 296 FDENPIAIGAFAALKKGIFVACSAGNSGPRPYSI--ENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFV 373 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~ 373 (774)
....+..++..+.++|+++|+||||++...... ++..+++|+||+.+.
T Consensus 109 -~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------- 158 (229)
T cd07477 109 -DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS----------------------------- 158 (229)
T ss_pred -CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-----------------------------
Confidence 234566677788899999999999999776654 788899999997421
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEE
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVT 453 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 453 (774)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccC
Q 046220 454 VNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRD 533 (774)
Q Consensus 454 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 533 (774)
.+.++.||++|+.. |+.|||.+|+++++.
T Consensus 159 ----------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~--------- 187 (229)
T cd07477 159 ----------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN--------- 187 (229)
T ss_pred ----------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC---------
Confidence 13456799999865 999999999999876
Q ss_pred CccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcc
Q 046220 534 IGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580 (774)
Q Consensus 534 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 580 (774)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 -----~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 -----NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 678899999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=349.74 Aligned_cols=151 Identities=30% Similarity=0.313 Sum_probs=107.3
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
.|+|||||||||++||+|.++-.. ..+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999853110 000110000000000011112234567899
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ....+++++|++|++++++|||||||.....
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGS--AESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 99999999998642 259999999999999988774 5888999999999999999999999975422
Q ss_pred CC--------CcHHHHHHHHHHcCCcEEEEccCCCCCCC
Q 046220 296 FD--------ENPIAIGAFAALKKGIFVACSAGNSGPRP 326 (774)
Q Consensus 296 ~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 326 (774)
.. .+.+..++..+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 11 13456666778889999999999999643
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=339.82 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=119.0
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
+++|+|||||||||++||+|.++ ++..++|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999743 12222232221000 0001123468
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCC----CCchHHHHHHHHHHHhCCCcEEEECc
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTL----KAAAVDVLAGMDQAIADGVDVMSLSL 289 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~----~~~~~di~~ai~~a~~~gvdVIn~Sl 289 (774)
.||||||||||+ |+||+|+|+.+|+++..+.. .++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999995 78999999999999876520 15677899999999999999999999
Q ss_pred CCCCCCC---CCcHHHHHHHHHHcCCcEEEEccCCCCCCCC-C--ccCCCCceEEeccc
Q 046220 290 GFPETTF---DENPIAIGAFAALKKGIFVACSAGNSGPRPY-S--IENGAPWITTVGAG 342 (774)
Q Consensus 290 G~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~--~~~~~p~vitVgA~ 342 (774)
|...... ....+..++.+|.++|++||+||||+|.... . .++..|++|+|||.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 9864322 2567788888999999999999999997654 2 34567889999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=352.62 Aligned_cols=274 Identities=34% Similarity=0.459 Sum_probs=206.0
Q ss_pred EEEEEcCCCCCCCCCCc-CCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCC
Q 046220 138 IVGVIDSGVWPESPSFK-DDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGH 216 (774)
Q Consensus 138 vVgVIDtGid~~Hp~f~-d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gH 216 (774)
+|||||||||++||+|. .+ + ...++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0 111333444454432 112345678899
Q ss_pred chhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHH-hCCCcEEEECcCCCC--
Q 046220 217 GTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI-ADGVDVMSLSLGFPE-- 293 (774)
Q Consensus 217 GThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~-~~gvdVIn~SlG~~~-- 293 (774)
||||||||+|.. . .. .....|+||+|+|+.+|+++..+ ....+++++|++++ +.+++|||||||...
T Consensus 49 GT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~---~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG---GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS---EEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred cchhhhhccccc-c-cc-----ccccccccccccccccccccccc---cccccccchhhhhhhccCCccccccccccccc
Confidence 999999999986 2 11 11248999999999999987776 68888999999999 899999999998732
Q ss_pred C-CCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCC
Q 046220 294 T-TFDENPIAIGAFAALKKGIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPE 369 (774)
Q Consensus 294 ~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 369 (774)
. +...+.+..+...+.++|+++|+||||+|.... ..+...+++|+||+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~-------------------------- 172 (282)
T PF00082_consen 119 PDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD-------------------------- 172 (282)
T ss_dssp SHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE--------------------------
T ss_pred cccccccccccccccccccCcceeeccccccccccccccccccccccccccccc--------------------------
Confidence 1 122334556666888999999999999987654 3555567778888621
Q ss_pred CCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcc
Q 046220 370 NLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDM 449 (774)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 449 (774)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCc
Q 046220 450 PFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIA 529 (774)
Q Consensus 450 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 529 (774)
..+.++.||++|+... .+++||||+|||.+|+++++....
T Consensus 173 -------------------------------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~-- 212 (282)
T PF00082_consen 173 -------------------------------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR-- 212 (282)
T ss_dssp -------------------------------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES--
T ss_pred -------------------------------------cccccccccccccccc-cccccccccccccccccccccccc--
Confidence 1135588999976543 379999999999999988875210
Q ss_pred cccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCCc
Q 046220 530 TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGH 609 (774)
Q Consensus 530 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~ 609 (774)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||+++.... .......||||+
T Consensus 213 ---------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~ 274 (282)
T PF00082_consen 213 ---------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGL 274 (282)
T ss_dssp ---------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSB
T ss_pred ---------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCCh
Confidence 24788999999999999999999999999999999999999999986211 233455889999
Q ss_pred cCCCCCCC
Q 046220 610 INPNKAMD 617 (774)
Q Consensus 610 vn~~~A~~ 617 (774)
||+.+|++
T Consensus 275 in~~~a~~ 282 (282)
T PF00082_consen 275 INAEKALN 282 (282)
T ss_dssp E-HHHHHH
T ss_pred hCHHHHhC
Confidence 99999864
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=328.17 Aligned_cols=222 Identities=23% Similarity=0.233 Sum_probs=172.8
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
||+|||||||||++||+|.+.... .+.+..+ ..........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~--------~~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL--------EIIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc--------ccccCCCCCCCCCC
Confidence 799999999999999999854110 0111000 00011234567889
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||||++ .+|+++|+.+|+++..+. +...++++||+|++++|++|||||||.....
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGR--CNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 99999999974 459999999999988775 7888999999999999999999999986432
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCce
Q 046220 296 FDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSR 375 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~ 375 (774)
....+..++.++.++|+++|+||||++..... ++..+.+|+|++...+.
T Consensus 106 -~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~----------------------------- 154 (222)
T cd07492 106 -DFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD----------------------------- 154 (222)
T ss_pred -cCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC-----------------------------
Confidence 23456677778888999999999999865433 66778888888632110
Q ss_pred EeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEc
Q 046220 376 EPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVN 455 (774)
Q Consensus 376 ~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 455 (774)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCc
Q 046220 456 LNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIG 535 (774)
Q Consensus 456 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 535 (774)
.. +.+++ ++|+.|||.+|+++.+.
T Consensus 155 ----------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~----------- 178 (222)
T cd07492 155 ----------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPH----------- 178 (222)
T ss_pred ----------------------------------Cc---ccccC--------CceEEeCCCCeEeecCC-----------
Confidence 00 11122 34999999999998776
Q ss_pred cccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 536 KLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 179 ---~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 ---GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=343.21 Aligned_cols=248 Identities=23% Similarity=0.233 Sum_probs=178.8
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
...+|..+++|+||+|+|||||||++||+|.++... ...+.|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 356899999999999999999999999999754111 01122222110
Q ss_pred cCCCCCC--CCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCC
Q 046220 204 TFDYDSP--RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADG 281 (774)
Q Consensus 204 ~~~~~~~--~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~g 281 (774)
...+ .|..+|||||||||+|+..+.. ...||||+|+|+.+|+++... ....+..++.++.+ .
T Consensus 75 ---~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~~----~~~~~~~~~~~~~~-~ 138 (297)
T cd04059 75 ---DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGDV----TDVVEAESLGLNPD-Y 138 (297)
T ss_pred ---CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCcc----ccHHHHHHHhcccC-C
Confidence 0112 2778999999999999864321 148999999999999987542 33445566666554 4
Q ss_pred CcEEEECcCCCCCCC----CCcHHHHHHHHHHc-----CCcEEEEccCCCCCCCCC----ccCCCCceEEecccccCcce
Q 046220 282 VDVMSLSLGFPETTF----DENPIAIGAFAALK-----KGIFVACSAGNSGPRPYS----IENGAPWITTVGAGTVDREF 348 (774)
Q Consensus 282 vdVIn~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~ 348 (774)
++|||||||...... .......++.++.+ +|++||+||||+|..... .....|++|+|||++
T Consensus 139 ~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~----- 213 (297)
T cd04059 139 IDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT----- 213 (297)
T ss_pred ceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC-----
Confidence 699999999764321 12233344444443 699999999999973221 223557788888632
Q ss_pred eEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcC
Q 046220 349 AARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTR 428 (774)
Q Consensus 349 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~G 428 (774)
T Consensus 214 -------------------------------------------------------------------------------- 213 (297)
T cd04059 214 -------------------------------------------------------------------------------- 213 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCccc
Q 046220 429 AAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILK 508 (774)
Q Consensus 429 a~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 508 (774)
..+.++.||++|+..
T Consensus 214 ----------------------------------------------------------~~g~~~~~s~~g~~~------- 228 (297)
T cd04059 214 ----------------------------------------------------------ANGVRASYSEVGSSV------- 228 (297)
T ss_pred ----------------------------------------------------------CCCCCcCCCCCCCcE-------
Confidence 124567899999987
Q ss_pred CeeEeCCCc-------eEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccc
Q 046220 509 PDILAPGVD-------ILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581 (774)
Q Consensus 509 PDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA 581 (774)
++.|||.. |+++..... . ..|..++|||||||+|||++|||+|+||+|++.|||++|++||
T Consensus 229 -~~~a~g~~~~~~~~~i~~~~~~~~----------~-~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA 296 (297)
T cd04059 229 -LASAPSGGSGNPEASIVTTDLGGN----------C-NCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTA 296 (297)
T ss_pred -EEEecCCCCCCCCCceEeCCCCCC----------C-CcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhc
Confidence 89999987 666554310 0 4678899999999999999999999999999999999999998
Q ss_pred c
Q 046220 582 D 582 (774)
Q Consensus 582 ~ 582 (774)
+
T Consensus 297 ~ 297 (297)
T cd04059 297 R 297 (297)
T ss_pred C
Confidence 5
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=328.78 Aligned_cols=243 Identities=28% Similarity=0.294 Sum_probs=185.2
Q ss_pred CCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCC
Q 046220 133 FGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRD 212 (774)
Q Consensus 133 ~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D 212 (774)
+|+||+|+|||+||+++||+|.+...... .+..... .......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~~---------~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVND---------AGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------ccccccc---------ccCCCCCC
Confidence 69999999999999999999986421100 0000000 00123456
Q ss_pred CCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCC-CCCCchHHHHHHHHHHHhCCCcEEEECcCC
Q 046220 213 FFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYND-TLKAAAVDVLAGMDQAIADGVDVMSLSLGF 291 (774)
Q Consensus 213 ~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~~~di~~ai~~a~~~gvdVIn~SlG~ 291 (774)
..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++..+ . +....+.++++++++.+++|||||||.
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGST--FSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcc--cchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 789999999999998644 2258999999999999998765 3 677888999999999999999999998
Q ss_pred CCCCC------------CCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCc---------cCCCCceEEecccccCcceeE
Q 046220 292 PETTF------------DENPIAIGAFAALKKGIFVACSAGNSGPRPYSI---------ENGAPWITTVGAGTVDREFAA 350 (774)
Q Consensus 292 ~~~~~------------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgA~~~~~~~~~ 350 (774)
..... ....+......+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~----- 188 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN----- 188 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-----
Confidence 65321 445566777788899999999999998654332 2345667777763211
Q ss_pred EEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCce
Q 046220 351 RVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAA 430 (774)
Q Consensus 351 ~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~ 430 (774)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCcccc--ccCCCCCCCCCCccc
Q 046220 431 GAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAK--FSSRGPSLRSPWILK 508 (774)
Q Consensus 431 g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~~~K 508 (774)
+.... ||++|+... .
T Consensus 189 ----------------------------------------------------------~~~~~~~~s~~~~~~~-----~ 205 (267)
T cd04848 189 ----------------------------------------------------------GTIASYSYSNRCGVAA-----N 205 (267)
T ss_pred ----------------------------------------------------------CCcccccccccchhhh-----h
Confidence 12223 488887543 3
Q ss_pred CeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 509 PDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 509 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+++.|||.+|.++.+... ..|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 206 ~~~~apG~~i~~~~~~~~------------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 206 WCLAAPGENIYSTDPDGG------------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred heeecCcCceeecccCCC------------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 479999999999876311 57889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=323.99 Aligned_cols=354 Identities=23% Similarity=0.315 Sum_probs=261.2
Q ss_pred CCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceE------EEeccceeeEEEEeC-----HHHHHhhcCCCC
Q 046220 30 RKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHL------YTYNHVVDGFSAVLS-----QTHLKNLQKMPG 98 (774)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~y~~~~~g~s~~~~-----~~~~~~L~~~p~ 98 (774)
+.+|||.|+.... ...++..+++.|+..... .-+++ -.|..-|.-+-++-. .-++++|..+|+
T Consensus 49 e~EyIv~F~~y~~---Ak~r~syi~skl~gS~Vt---nWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP---AKDRRSYIESKLRGSGVT---NWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred cceeEEEeccccc---chHHHHHHHHHhhcCCCC---ceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 5789999996532 345677777777654433 23333 334444444444433 235889999999
Q ss_pred eEEEEeceeeecccC------------C----------C--------CCccccc------------ccCCCCcCCCCCCc
Q 046220 99 HHGTYLETFGHLHTT------------H----------T--------PKFVGLK------------KHAGLWPAAGFGSD 136 (774)
Q Consensus 99 V~~V~~~~~~~~~~~------------~----------s--------~~~~g~~------------~~~~~w~~~~~G~g 136 (774)
|+.|.|.+.+.+-.. . + +.-|+-. .++-+|..|++|++
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~ 202 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAK 202 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCc
Confidence 999999876654100 0 0 0001000 13458999999999
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCC
Q 046220 137 VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGH 216 (774)
Q Consensus 137 VvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gH 216 (774)
|+|||.|||+..+||-|+.- .-...+++. ..-.|.-||
T Consensus 203 VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD~lgH 240 (1033)
T KOG4266|consen 203 VKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDDNLGH 240 (1033)
T ss_pred eEEEEeecccccCCccccch----------------------------hhhcCCcCc--------------cccccCccc
Confidence 99999999999999999721 000011111 234567899
Q ss_pred chhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCCC
Q 046220 217 GTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTF 296 (774)
Q Consensus 217 GThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~~ 296 (774)
||.|||+|||... ..|.||+++|+++|||-+... .+++.+++|+.||+...+||+|+|+|++ .+
T Consensus 241 GTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qV--SYTSWFLDAFNYAI~~kidvLNLSIGGP--Df 304 (1033)
T KOG4266|consen 241 GTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQV--SYTSWFLDAFNYAIATKIDVLNLSIGGP--DF 304 (1033)
T ss_pred ceeEeeeeccchh------------hcccCCccceeEEEeecccee--ehhhHHHHHHHHHHhhhcceEeeccCCc--cc
Confidence 9999999999752 379999999999999988765 7889999999999999999999999996 46
Q ss_pred CCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCC--ceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCc
Q 046220 297 DENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAP--WITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVS 374 (774)
Q Consensus 297 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 374 (774)
.+.++-+-+.....++|++|.|+||+||-..+..|.+. .+|.||.
T Consensus 305 mD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG--------------------------------- 351 (1033)
T KOG4266|consen 305 MDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG--------------------------------- 351 (1033)
T ss_pred ccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc---------------------------------
Confidence 67777777778888999999999999998777665332 2233331
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEE
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTV 454 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 454 (774)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCC----CCCcccCeeEeCCCceEeecCCCCCCcc
Q 046220 455 NLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLR----SPWILKPDILAPGVDILGAWVPNRPIAT 530 (774)
Q Consensus 455 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa~~~~~~~~~ 530 (774)
.+..+.+|.|||||-+.. ..|++||||++-|.+|....-.
T Consensus 352 ------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------ 395 (1033)
T KOG4266|consen 352 ------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------ 395 (1033)
T ss_pred ------------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------
Confidence 233468999999996532 2489999999999999866443
Q ss_pred ccCCccccccceecccccchhHHHHHHHHHHHH----hcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccC
Q 046220 531 IRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----THHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFG 606 (774)
Q Consensus 531 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 606 (774)
.+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++. ..-+.||
T Consensus 396 --------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg-------------~NMfEQG 454 (1033)
T KOG4266|consen 396 --------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG-------------PNMFEQG 454 (1033)
T ss_pred --------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------Cchhhcc
Confidence 5778899999999999999999976 33456899999999999999853 2346999
Q ss_pred CCccCCCCCCC
Q 046220 607 AGHINPNKAMD 617 (774)
Q Consensus 607 ~G~vn~~~A~~ 617 (774)
+|++|+.++.+
T Consensus 455 aGkldLL~syq 465 (1033)
T KOG4266|consen 455 AGKLDLLESYQ 465 (1033)
T ss_pred CcchhHHHHHH
Confidence 99999998876
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=306.09 Aligned_cols=240 Identities=27% Similarity=0.315 Sum_probs=180.9
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCC
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~ 293 (774)
.-|||||||||+|+..... ...||||+|+|+.+++.+..-..+.+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999975542 25799999999999997755333456778899999999999999999999865
Q ss_pred -CCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccC---CCCceEEecccccCcceeEEEEeCCceEEEeeeeecCC
Q 046220 294 -TTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIEN---GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPE 369 (774)
Q Consensus 294 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 369 (774)
.+.....+...-..+.++|+++|+||||+||.-.+++. ....+|.|||.-....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~m---------------------- 439 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGM---------------------- 439 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHH----------------------
Confidence 34445555555545557899999999999998776653 3346777776210000
Q ss_pred CCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcc
Q 046220 370 NLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDM 449 (774)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 449 (774)
...
T Consensus 440 ---------------------------------------------------m~a-------------------------- 442 (1304)
T KOG1114|consen 440 ---------------------------------------------------MQA-------------------------- 442 (1304)
T ss_pred ---------------------------------------------------HHh--------------------------
Confidence 000
Q ss_pred cEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCc
Q 046220 450 PFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIA 529 (774)
Q Consensus 450 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 529 (774)
.|- +-.+-......+|||||+.| |-+--.|+|||+.|.+- |..
T Consensus 443 --------------~y~----------------~~e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsV-P~~---- 485 (1304)
T KOG1114|consen 443 --------------EYS----------------VREPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASV-PQY---- 485 (1304)
T ss_pred --------------hhh----------------hhccCCCCccccccCCCCcC--CCcceEEecCCccccCC-chh----
Confidence 000 00011245788999999998 78888999999998653 221
Q ss_pred cccCCccccccceecccccchhHHHHHHHHHHHH----hcCCCCHHHHHHHHHccccccccccccccccCCCccCCCccc
Q 046220 530 TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----THHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDF 605 (774)
Q Consensus 530 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~ 605 (774)
.+ ..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++++. .++.+
T Consensus 486 -----tl--q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~faq 545 (1304)
T KOG1114|consen 486 -----TL--QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFAQ 545 (1304)
T ss_pred -----hh--hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhcc
Confidence 11 4668999999999999999999965 467899999999999999998532 46899
Q ss_pred CCCccCCCCCCC
Q 046220 606 GAGHINPNKAMD 617 (774)
Q Consensus 606 G~G~vn~~~A~~ 617 (774)
|.|+|++++|.+
T Consensus 546 G~GmlqVdkAyE 557 (1304)
T KOG1114|consen 546 GQGMLQVDKAYE 557 (1304)
T ss_pred CcceeehhHHHH
Confidence 999999999976
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=281.10 Aligned_cols=195 Identities=21% Similarity=0.156 Sum_probs=141.1
Q ss_pred CCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHH--HhCCCcEEEE
Q 046220 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQA--IADGVDVMSL 287 (774)
Q Consensus 210 ~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a--~~~gvdVIn~ 287 (774)
..|.++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~------~~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI------KSNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC------CCCCccHHHHHHHHHhcCCceEEEe
Confidence 457899999999999987 4677999998766522 2334466778888 5679999999
Q ss_pred CcCCCCCCC------CCcHHHHHHHHHHcC-CcEEEEccCCCCCCC-----CCccCCCCceEEecccccCcceeEEEEeC
Q 046220 288 SLGFPETTF------DENPIAIGAFAALKK-GIFVACSAGNSGPRP-----YSIENGAPWITTVGAGTVDREFAARVTLG 355 (774)
Q Consensus 288 SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 355 (774)
|||...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~-------- 163 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD-------- 163 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC--------
Confidence 999864321 223455666666655 999999999999743 233456778899987432110
Q ss_pred CceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEe
Q 046220 356 NEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIIS 435 (774)
Q Consensus 356 ~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~ 435 (774)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCC
Q 046220 436 ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPG 515 (774)
Q Consensus 436 n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 515 (774)
....+.||++|-.....+..||||+|||
T Consensus 164 ----------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG 191 (247)
T cd07488 164 ----------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPG 191 (247)
T ss_pred ----------------------------------------------------cceecccccccCCCCCCCCceeEEEEee
Confidence 0112456665432222368899999999
Q ss_pred CceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCC------HHHHHHHHHccc
Q 046220 516 VDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS------SAAIRSAMMTTA 581 (774)
Q Consensus 516 ~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------~~~ik~~L~~TA 581 (774)
++|++ +. +.|..++|||||||||||++|||++++|++. -.++|.+|+.|+
T Consensus 192 ~~i~s--~~--------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 192 SNYNL--PD--------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred eeEEC--CC--------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 99998 32 5788999999999999999999999987765 456777777653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=269.68 Aligned_cols=197 Identities=35% Similarity=0.491 Sum_probs=158.4
Q ss_pred CCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHH-hCCCcEEEE
Q 046220 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI-ADGVDVMSL 287 (774)
Q Consensus 209 ~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~-~~gvdVIn~ 287 (774)
...+..+||||||++|++...+.. ..|+||+++|+.+|+....+. .....+++++++++ ..+++||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~--~~~~~~~~ai~~~~~~~~~~iin~ 107 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGS--GSSSDIAAAIDYAAADQGADVINL 107 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCC--cCHHHHHHHHHHHHhccCCCEEEe
Confidence 345678999999999999864432 279999999999999887664 67888999999999 899999999
Q ss_pred CcCCCCCCCCCcHHHHHHHHHHcC-CcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCceEEEee
Q 046220 288 SLGFPETTFDENPIAIGAFAALKK-GIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363 (774)
Q Consensus 288 SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g 363 (774)
|||..... ....+...+..+.++ |+++|+|+||++.... ..++..+++|+||+.+.+.
T Consensus 108 S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 108 SLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 99986543 345566667777777 9999999999998776 5777889999999853211
Q ss_pred eeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCC
Q 046220 364 KSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLF 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 443 (774)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCcc-ccccCCCCCCCCCCcccCeeEeCCCceEeec
Q 046220 444 PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQV-AKFSSRGPSLRSPWILKPDILAPGVDILGAW 522 (774)
Q Consensus 444 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 522 (774)
.. ..++++| .|||+.|||.++....
T Consensus 170 ----------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~ 195 (241)
T cd00306 170 ----------------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSP 195 (241)
T ss_pred ----------------------------------------------CccCCcCCCC--------CCceEEeCcCCccCcc
Confidence 11 1344444 3669999999998751
Q ss_pred CCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcc
Q 046220 523 VPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580 (774)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 580 (774)
.... ..+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 196 ~~~~------------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 196 TTGG------------GGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cCCC------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 1111 678999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=237.38 Aligned_cols=273 Identities=32% Similarity=0.418 Sum_probs=195.5
Q ss_pred CCCCcC--CCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccc
Q 046220 125 AGLWPA--AGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIS 202 (774)
Q Consensus 125 ~~~w~~--~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~ 202 (774)
...|.. +.+|+||+|+|||+||+..||+|.+.... .++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 457877 89999999999999999999999854210 01222221
Q ss_pred ccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeC-CCCCCchHHHHHHHHHHHhCC
Q 046220 203 TTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYN-DTLKAAAVDVLAGMDQAIADG 281 (774)
Q Consensus 203 ~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~~~~di~~ai~~a~~~g 281 (774)
+.....|.++|||||+|++++....+ ...+.|++|+++++.+|++... +. ....+++++|+++++.+
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~--~~~~~~~~~i~~~~~~~ 242 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGS--GELSDVAEGIEGAANLG 242 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCc--ccHHHHHHHHHHHHhcC
Confidence 00024688999999999999842111 1125899999999999999876 55 78888899999999999
Q ss_pred --CcEEEECcCCCCCCCCCcHHHHHHHHHHcCC-cEEEEccCCCCCCCC----CccCCC--CceEEecccccCcceeEEE
Q 046220 282 --VDVMSLSLGFPETTFDENPIAIGAFAALKKG-IFVACSAGNSGPRPY----SIENGA--PWITTVGAGTVDREFAARV 352 (774)
Q Consensus 282 --vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----~~~~~~--p~vitVgA~~~~~~~~~~~ 352 (774)
+++||||+|..........+..++..++..| +++|+++||.+.... ..+... +.+++|++..
T Consensus 243 ~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~--------- 313 (508)
T COG1404 243 GPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD--------- 313 (508)
T ss_pred CCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC---------
Confidence 9999999998522233445566666777776 999999999986642 122211 2444444311
Q ss_pred EeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEE
Q 046220 353 TLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432 (774)
Q Consensus 353 ~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~ 432 (774)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeE
Q 046220 433 IISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDIL 512 (774)
Q Consensus 433 i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 512 (774)
..+.++.||++|+.. ..++.
T Consensus 314 ------------------------------------------------------~~~~~~~~s~~g~~~------~~~~~ 333 (508)
T COG1404 314 ------------------------------------------------------LSDTVASFSNDGSPT------GVDIA 333 (508)
T ss_pred ------------------------------------------------------CCCccccccccCCCC------Cccee
Confidence 124678899999852 12999
Q ss_pred eCCCceEe-----ecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC-CCCHHHHHHHHHcccccccc
Q 046220 513 APGVDILG-----AWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH-EWSSAAIRSAMMTTADVLDN 586 (774)
Q Consensus 513 APG~~I~s-----a~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~s~~~ik~~L~~TA~~~~~ 586 (774)
|||.+|.+ +++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++...
T Consensus 334 apg~~i~~~~~~~~~~~~~------------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~-- 399 (508)
T COG1404 334 APGVNILSLSAVNTLPGDG------------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT-- 399 (508)
T ss_pred CCCccccccccceeeeCCc------------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc--
Confidence 99999987 444310 1389999999999999999999999999 899999999988888740
Q ss_pred ccccccccCCCccCCCcccCCCccCCCCCCC
Q 046220 587 AYDMIADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 587 ~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
........++.|..+...+..
T Consensus 400 ----------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 ----------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ----------cCCccccccccCccccccccc
Confidence 011223366666666555444
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-24 Score=217.20 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=102.9
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|.++++|++|++||+|.||||-||++..+ | .--.+++|..+ ++
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfssn---------dp 196 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSSN---------DP 196 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------c-------CceeecccccC---------CC
Confidence 45899999999999999999999999999732 1 12233444432 22
Q ss_pred CCCCCCCC--CCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-CC
Q 046220 205 FDYDSPRD--FFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-DG 281 (774)
Q Consensus 205 ~~~~~~~D--~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-~g 281 (774)
.++..-.| .+.|||.|||-+++...++.. | .|||.+.++..+|+++. .+..|+++|-....+ ..
T Consensus 197 fpyprytddwfnshgtrcagev~aardngic--g------vgvaydskvagirmldq-----pymtdlieansmghep~k 263 (629)
T KOG3526|consen 197 FPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--G------VGVAYDSKVAGIRMLDQ-----PYMTDLIEANSMGHEPSK 263 (629)
T ss_pred CCCCcccchhhhccCccccceeeeeccCCce--e------eeeeeccccceeeecCC-----chhhhhhhhcccCCCCce
Confidence 23222223 589999999999888776654 2 69999999999999875 566777766433332 35
Q ss_pred CcEEEECcCCCCCC-CCCcHHHHHHHHHH----c-----CCcEEEEccCCCCCC
Q 046220 282 VDVMSLSLGFPETT-FDENPIAIGAFAAL----K-----KGIFVACSAGNSGPR 325 (774)
Q Consensus 282 vdVIn~SlG~~~~~-~~~~~~~~a~~~a~----~-----~Gi~vV~AAGN~G~~ 325 (774)
++|.+-|||..... ..+-| ..+..+|+ + .|-++|.|.|..|..
T Consensus 264 ihiysaswgptddgktvdgp-rnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 264 IHIYSASWGPTDDGKTVDGP-RNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred EEEEecccCcCCCCcccCCc-hhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 78999999976432 22222 22222332 2 355788888877743
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-17 Score=178.71 Aligned_cols=101 Identities=28% Similarity=0.315 Sum_probs=80.6
Q ss_pred eeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC---CCcEEEECcCCCCCCC---CCcHHHHHHHHHHcCCcE
Q 046220 241 TAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD---GVDVMSLSLGFPETTF---DENPIAIGAFAALKKGIF 314 (774)
Q Consensus 241 ~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~---gvdVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~ 314 (774)
.+.||||+|+|+.|+++++ ...+++.++.+++.+ +++|||+|||...... +.+.+..++.+|..+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~------~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 82 YAGAIAPGANITLYFAPGT------VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHhccCCCeEEEEEECCc------CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 3689999999999999754 245577888888887 9999999999865321 235667777888899999
Q ss_pred EEEccCCCCCCCC-----------CccCCCCceEEecccccCcc
Q 046220 315 VACSAGNSGPRPY-----------SIENGAPWITTVGAGTVDRE 347 (774)
Q Consensus 315 vV~AAGN~G~~~~-----------~~~~~~p~vitVgA~~~~~~ 347 (774)
||+|+||+|.... ..++..|++++||+++....
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999999997653 35678999999999876543
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=110.55 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=90.5
Q ss_pred CCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCCC--CCCCc
Q 046220 372 FVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNLF--PGDFD 448 (774)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~~--~~~~~ 448 (774)
.....+++|.+. |....+...+++|||+|| +|+.|.+.+ |..+++++||.|+|++|+ .+.... .....
T Consensus 24 ~~~~~~lv~~g~------g~~~d~~~~dv~GkIvL~--~rg~c~~~~-K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~ 94 (143)
T cd02133 24 LGKTYELVDAGL------GTPEDFEGKDVKGKIALI--QRGEITFVE-KIANAKAAGAVGVIIYNNVDGLIPGTLGEAVF 94 (143)
T ss_pred CCcEEEEEEccC------CchhccCCCCccceEEEE--ECCCCCHHH-HHHHHHHCCCeEEEEeecCCCcccccCCCCCe
Confidence 356788998644 333444556899999999 999999888 999999999999999988 332111 11357
Q ss_pred ccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCC
Q 046220 449 MPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPS 500 (774)
Q Consensus 449 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 500 (774)
+|+++|+.++|..|++|+++ ++++.+..+.. ..+++.++.||||||+
T Consensus 95 iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 95 IPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred EeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 89999999999999999988 56677666655 4577889999999997
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=101.94 Aligned_cols=118 Identities=31% Similarity=0.573 Sum_probs=93.4
Q ss_pred EEeCCceEEEeeeeecCCCCCCceEeEEEccC---CCCcccccCCCCCCCCcccEEEEEEEeCCCC-chhHHHHHHHHhc
Q 046220 352 VTLGNEELSVIGKSVYPENLFVSREPIYFGYG---NRSKEICEGNSTDPRAVAGKYIFCAFDYKGN-ITVSQQLEEVRRT 427 (774)
Q Consensus 352 ~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~---~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~-~~~~~~~~~~~~~ 427 (774)
+.++|++. +.|+++++... ..+++++... ......|.+..+...+++|||++| +++.| .+.+ |..+++++
T Consensus 2 i~LGng~~-i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc--~~~~~~~~~~-k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKT-IVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC--DRGGNTSRVA-KGDAVKAA 75 (126)
T ss_pred EEeCCCCE-EEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEE--eCCCCccHHH-HHHHHHHc
Confidence 57888887 99999998332 4567776332 234578988888888999999999 99998 8788 99999999
Q ss_pred CceEEEEecCC-CCC-CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEE
Q 046220 428 RAAGAIISADS-RQN-LFPGDFDMPFVTVNLNNGELVKKYIINADNATVS 475 (774)
Q Consensus 428 Ga~g~i~~n~~-~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 475 (774)
||.|+|++|+. +.. .......+|.+.|+.++|..|++|++++.+++++
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999883 221 2222468999999999999999999988776554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-09 Score=92.16 Aligned_cols=80 Identities=34% Similarity=0.535 Sum_probs=58.4
Q ss_pred eEEEEeCCCCCCCC-CcchhHHHHHHhccCCCC-CCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEeceeee
Q 046220 32 TYIVHMDKAAMPAP-FSTHHHWYMSTLSSLSSP-DGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGH 109 (774)
Q Consensus 32 ~yIV~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 109 (774)
+|||+|+++..... ...+.+++.+++.+.... .....++.+.|+..|+||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999866554 566777777654431100 1125799999999999999999999999999999999999999988
Q ss_pred cc
Q 046220 110 LH 111 (774)
Q Consensus 110 ~~ 111 (774)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-08 Score=86.77 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=71.7
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC------CCCCCCCCCC
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD------SRQNLFPGDF 447 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~------~~~~~~~~~~ 447 (774)
.+.+|++.........|.+......+++|||+|| +||.|.+.+ |..+++++||.|+|++|. ..........
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv--~rg~~~~~~-k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~ 82 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLV--ERGSCSFDD-KVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPI 82 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEE--ESTSSCHHH-HHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTST
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEE--ecCCCCHHH-HHHHHHHcCCEEEEEEeCCccccCcccccCCCCc
Confidence 4567775444445567777788889999999999 999999998 999999999999999992 2223344568
Q ss_pred cccEEEEccccHHHHHHHH
Q 046220 448 DMPFVTVNLNNGELVKKYI 466 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~ 466 (774)
.+|+++|+.++|+.|++|+
T Consensus 83 ~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 83 DIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp BSEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhhccC
Confidence 9999999999999999985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-07 Score=103.12 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=98.7
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
...+|..+++|+++.|+|+|+|+...||++... ....+.+++.... +.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------ND 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CC
Confidence 466899999999999999999999999999742 1222333333221 11
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-CCC
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-DGV 282 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-~gv 282 (774)
+.+-.+......|||-||+-.+...++..- ..|+++++++..++++... .++...+...... .-+
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~~------v~~~~~~~~~~~~~~~~ 135 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAGC------VSDAVEAPSLGFGPCHI 135 (431)
T ss_pred cccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeeee------cccceecccccCCCCCc
Confidence 122222334588999999999988644332 3799999999999997632 1222222222222 347
Q ss_pred cEEEECcCCCCCC-CC---CcHHHHHHHH-----HHcCCcEEEEccCCCCCCC
Q 046220 283 DVMSLSLGFPETT-FD---ENPIAIGAFA-----ALKKGIFVACSAGNSGPRP 326 (774)
Q Consensus 283 dVIn~SlG~~~~~-~~---~~~~~~a~~~-----a~~~Gi~vV~AAGN~G~~~ 326 (774)
++-+.|||..... .. ......+... ...+|-+.++|.||.|...
T Consensus 136 di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 136 DIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred eeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 8999999975421 11 1112222222 2356789999999987543
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-07 Score=84.37 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=75.3
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCC-CCC----CC--CCC
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR-QNL----FP--GDF 447 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~-~~~----~~--~~~ 447 (774)
.-++++... ...+.|.+..+...+++|||+|| .|+.|.+.+ |..+++++||.++|++|+.. ... .. ...
T Consensus 18 ~~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv--~rg~c~f~~-K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP-ERPAGCDASDYDGLDVKGAIVLV--DRGGCPFAD-KQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC-CCccCCCccccCCCCcCCeEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 345666432 23478988877778899999999 999999998 99999999999999999832 111 11 345
Q ss_pred cccEEEEccccHHHHHHHHHhCCCcEE
Q 046220 448 DMPFVTVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
.+|+++|+.++|+.|++++..+.+.++
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 699999999999999999987765443
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.52 E-value=7e-07 Score=83.74 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=74.9
Q ss_pred EEccCCCCcccccCCCC--CCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC--CCCCC----CCCCccc
Q 046220 379 YFGYGNRSKEICEGNST--DPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS--RQNLF----PGDFDMP 450 (774)
Q Consensus 379 ~~~~~~~~~~~c~~~~~--~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~--~~~~~----~~~~~~p 450 (774)
+........+.|.+... .+.++.|+|+|+ .||.|.|.+ |..+++++||.++|++|+. +.... .....+|
T Consensus 36 ~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV--~RG~C~F~~-K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip 112 (138)
T cd02122 36 VVPDPPNDHYGCDPDTRFPIPPNGEPWIALI--QRGNCTFEE-KIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIV 112 (138)
T ss_pred ecCCCCCCcCCCCCCccccCCccCCCeEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcce
Confidence 33334445678988776 567899999999 999999999 9999999999999999983 32221 1234789
Q ss_pred EEEEccccHHHHHHHHHhCCCcEEE
Q 046220 451 FVTVNLNNGELVKKYIINADNATVS 475 (774)
Q Consensus 451 ~~~i~~~~g~~l~~~~~~~~~~~~~ 475 (774)
.++|+..+|+.|++++.++.+.+++
T Consensus 113 ~v~Is~~~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 113 AIMITNPKGMEILELLERGISVTMV 137 (138)
T ss_pred EEEEcHHHHHHHHHHHHcCCcEEEe
Confidence 9999999999999999988766554
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.5e-07 Score=81.35 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=68.7
Q ss_pred CcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCCC-----CCCCcccEEEEccccH
Q 046220 386 SKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNLF-----PGDFDMPFVTVNLNNG 459 (774)
Q Consensus 386 ~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~~-----~~~~~~p~~~i~~~~g 459 (774)
..+.|.+..+. .+++|||+|| .|+.|.+.. |..+++++||.|+|++|+ ...... .....+|+++|+.++|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~--~rg~c~f~~-k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g 101 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALI--DRGTCNFTV-KVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADG 101 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEE--ECCCCCHHH-HHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHH
Confidence 45689887763 4699999999 999999888 999999999999999988 322111 1235799999999999
Q ss_pred HHHHHHHHhCCCcEE
Q 046220 460 ELVKKYIINADNATV 474 (774)
Q Consensus 460 ~~l~~~~~~~~~~~~ 474 (774)
..|++|++.+.+.++
T Consensus 102 ~~l~~~l~~g~~v~v 116 (118)
T cd04818 102 DALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHHhcCCcEEE
Confidence 999999998765544
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.3e-07 Score=80.17 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=72.5
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC-CCC-----CCCC
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ-NLF-----PGDF 447 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~-----~~~~ 447 (774)
..+|++... ....|.+..+.+.+++|+|+|+ +||.|.|.+ |..+++++||.++|++|+... ... ....
T Consensus 20 ~~~~~~~~~---~~~gC~~~~~~~~~l~gkIaLV--~RG~CsF~~-K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLT---SSVLCSASDVPPGGLKGKAVVV--MRGNCTFYE-KARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCC---CcCCCCccccCccccCCeEEEE--ECCCcCHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 456666643 3467998888778899999999 999999999 999999999999999999432 111 1346
Q ss_pred cccEEEEccccHHHHHHHHHhC
Q 046220 448 DMPFVTVNLNNGELVKKYIINA 469 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~ 469 (774)
.+|+++|+.++|..|++.+.+.
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cccEEEEeHHHHHHHHHHhccC
Confidence 7899999999999999887643
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=80.43 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=69.9
Q ss_pred cccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC-C--CCCC-------CCCCcccEEEEcc
Q 046220 387 KEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS-R--QNLF-------PGDFDMPFVTVNL 456 (774)
Q Consensus 387 ~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~-~--~~~~-------~~~~~~p~~~i~~ 456 (774)
.+.|.+.. ...+++|+|+|+ +||.|.|.+ |..+++++||.++|++|+. + .... .....+|+++|+.
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv--~RG~C~F~~-K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEELR-NIHDINGNIALI--ERGGCSFLT-KAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCCCC-CccccCCeEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 46798643 356799999999 999999999 9999999999999999983 2 1111 1235789999999
Q ss_pred ccHHHHHHHHHhCCCcEEEE
Q 046220 457 NNGELVKKYIINADNATVSI 476 (774)
Q Consensus 457 ~~g~~l~~~~~~~~~~~~~i 476 (774)
.+|..|++.+..+..+++.+
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999888776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-06 Score=77.11 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=72.9
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC----C--CCCCC
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN----L--FPGDF 447 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~----~--~~~~~ 447 (774)
..-++++.. ...|.+..+ +.+++|||+|+ +|+.|.+.+ |..+++++||.++|++|+.... . ..+..
T Consensus 22 ~~g~lv~~~----~~gC~~~~~-~~~~~gkIvlv--~rg~c~f~~-K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~ 93 (122)
T cd02130 22 VTGPLVVVP----NLGCDAADY-PASVAGNIALI--ERGECPFGD-KSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGP 93 (122)
T ss_pred cEEEEEEeC----CCCCCcccC-CcCCCCEEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEECCCCcccccccCCCCCC
Confidence 345666642 357876554 35799999999 999999988 9999999999999999884211 1 11246
Q ss_pred cccEEEEccccHHHHHHHHHhCCCcEEE
Q 046220 448 DMPFVTVNLNNGELVKKYIINADNATVS 475 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 475 (774)
.+|+++|+.++|..|+..+.++.+.+++
T Consensus 94 ~Ip~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 94 YVPTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred EeeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 7999999999999999999988765543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=79.33 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=67.4
Q ss_pred cccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCC-----CCC--------CCCCcccEE
Q 046220 387 KEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQ-----NLF--------PGDFDMPFV 452 (774)
Q Consensus 387 ~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~-----~~~--------~~~~~~p~~ 452 (774)
.+.|.+... +.+++|||+|+ +||.|.|.+ |..+++++||.++|++|+ ++. ... .+...+|++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv--~RG~C~f~~-K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIM--ERGDCMFVE-KARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccCCCC-ccccCceEEEE--ECCCCcHHH-HHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467976543 55789999999 999999998 999999999999999987 331 110 124578999
Q ss_pred EEccccHHHHHHHHHhCCCcEE
Q 046220 453 TVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 453 ~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
+|+..+|..|++++..+...++
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceEE
Confidence 9999999999999987765443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.6e-06 Score=76.30 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=70.9
Q ss_pred EeEEEccCC--CCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCC--CCCCCCccc
Q 046220 376 EPIYFGYGN--RSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQN--LFPGDFDMP 450 (774)
Q Consensus 376 ~~l~~~~~~--~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~--~~~~~~~~p 450 (774)
+|++..... ...+.|.+...+..+++|+|+|+ +||.|.+.+ |..+++++||.++|++|+ ++.. ...+...+|
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv--~rg~c~f~~-K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~ 104 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLV--RRGTCTFAT-KAANAAAKGAKYVLIYNNGSGPTDQVGSDADSII 104 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEE--ECCCCCHHH-HHHHHHHcCCcEEEEEECCCCcccccCCCCccee
Confidence 565554432 34578987766666899999999 999999999 999999999999999988 3321 122233456
Q ss_pred EEEEccccHHHHHHHHHhCCCcEE
Q 046220 451 FVTVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 451 ~~~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
.+.+ .++|+.|++.+..+...++
T Consensus 105 ~~~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 105 AAVT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred eEEe-HHHHHHHHHHHhcCCeEEE
Confidence 5555 9999999999987765443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-06 Score=79.29 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=68.3
Q ss_pred cccccCCC--CCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC--CC--C----CCCCcccEEEEcc
Q 046220 387 KEICEGNS--TDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ--NL--F----PGDFDMPFVTVNL 456 (774)
Q Consensus 387 ~~~c~~~~--~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~--~----~~~~~~p~~~i~~ 456 (774)
...|.++. +...+++|||+|| .|+.|.+.. |..+++++||.|+|++++... .. . .....+|++.|+.
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~--~~g~~~~~~-k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~ 106 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLV--RRGGCSFSE-KVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISY 106 (126)
T ss_pred eEEEecCcccccCCCccceEEEE--ECCCcCHHH-HHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCH
Confidence 34687776 6678899999999 999999888 999999999999999988321 11 1 1345799999999
Q ss_pred ccHHHHHHHHHhCCCcE
Q 046220 457 NNGELVKKYIINADNAT 473 (774)
Q Consensus 457 ~~g~~l~~~~~~~~~~~ 473 (774)
++|..|++|+.++.+.+
T Consensus 107 ~~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 107 ADGEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHHHhcCCceE
Confidence 99999999998765543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.4e-06 Score=97.14 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=59.1
Q ss_pred eeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCC-cEEEECcCCCCC--C-C--CCcHHHHHHHHHHcCCcEE
Q 046220 242 AIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGV-DVMSLSLGFPET--T-F--DENPIAIGAFAALKKGIFV 315 (774)
Q Consensus 242 ~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gv-dVIn~SlG~~~~--~-~--~~~~~~~a~~~a~~~Gi~v 315 (774)
.+-+||+|+|..|-. +. .....+..|+.+...+=+ -+|-.||+.... + + +-+.+......|..+||.+
T Consensus 288 s~A~AP~A~I~lvva--p~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi 361 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITI 361 (1174)
T ss_pred hhccCccCceEEEEc--CC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEE
Confidence 578999999998876 22 233333344433333211 344456665321 1 1 2234455555777899999
Q ss_pred EEccCCCCCCCC--------CccCCCCceEEecc
Q 046220 316 ACSAGNSGPRPY--------SIENGAPWITTVGA 341 (774)
Q Consensus 316 V~AAGN~G~~~~--------~~~~~~p~vitVgA 341 (774)
++|+|.+|.... ..++.+|++++||.
T Consensus 362 ~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 362 FAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999986553 24568999999997
|
|
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.6e-06 Score=74.28 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=59.6
Q ss_pred ceEEEEEEEEecCCCceEEEEEEEC--------CCC----------c-EEEEecceEEEecCCceEEEEEEEEeccCCCC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKA--------PAG----------M-TVAVQPVTLSFDEKHSKAEFNLTVNINLGNDV 736 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~--------p~g----------~-~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~ 736 (774)
...+++.||+|.|+...+|+++... ..| . .+..+|..+++ ++|++++++|+++.+....
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~- 85 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLD- 85 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGH-
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCC-
Confidence 4689999999999999999988751 111 1 67778899999 7999999999999965322
Q ss_pred CCCCCCccEEEEEEEEeeCCeeEEEEEEE
Q 046220 737 SPKRNYLGNFGYLTWFEVNGKHQVRSPIV 765 (774)
Q Consensus 737 ~~~~~~~~~~G~~~~~~~~~~~~v~~P~~ 765 (774)
.....+++|+|.++..++...+++|++
T Consensus 86 --~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 --ASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --HTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred --cccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 013679999999965556679999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.5e-06 Score=78.72 Aligned_cols=91 Identities=11% Similarity=0.199 Sum_probs=70.5
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC-CCCCC-------CCC
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS-RQNLF-------PGD 446 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~-~~~~~-------~~~ 446 (774)
..+++... ..+.|.+.. .+++|+|+|+ +||.|.|.+ |..+++++||.++|++|+. +.... ...
T Consensus 39 ~~~lv~~~---~~~gC~~~~---~~~~g~IvLV--~RG~C~F~~-K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~ 109 (139)
T cd02132 39 KTRAVLAN---PLDCCSPST---SKLSGSIALV--ERGECAFTE-KAKIAEAGGASALLIINDQEELYKMVCEDNDTSLN 109 (139)
T ss_pred EEEEEECC---cccccCCCC---cccCCeEEEE--ECCCCCHHH-HHHHHHHcCCcEEEEEECCCcccccccCCCCCCCC
Confidence 44555532 247798654 4799999999 999999998 9999999999999999883 21111 113
Q ss_pred CcccEEEEccccHHHHHHHHHhCCCcEE
Q 046220 447 FDMPFVTVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 447 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
..+|+++|+..+|..|++++.++.+.++
T Consensus 110 ~~IP~v~Is~~~G~~L~~~l~~g~~Vtv 137 (139)
T cd02132 110 ISIPVVMIPQSAGDALNKSLDQGKKVEV 137 (139)
T ss_pred CcEeEEEecHHHHHHHHHHHHcCCcEEE
Confidence 5799999999999999999988766543
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.4e-06 Score=76.17 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=67.2
Q ss_pred cccccCCCCC--CC----CcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCC-C-----------CCCC
Q 046220 387 KEICEGNSTD--PR----AVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNL-F-----------PGDF 447 (774)
Q Consensus 387 ~~~c~~~~~~--~~----~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~-~-----------~~~~ 447 (774)
.+.|.+.... +. ...++|+|+ +||.|.|.+ |..+++++||.++|++|+ ++... . .+..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv--~RG~C~F~~-K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i 98 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLL--DRGGCFFTL-KAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKI 98 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEE--ECCCcCHHH-HHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCc
Confidence 4678765542 22 367899999 999999999 999999999999999998 33211 1 1234
Q ss_pred cccEEEEccccHHHHHHHHHhCCCcEEE
Q 046220 448 DMPFVTVNLNNGELVKKYIINADNATVS 475 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 475 (774)
.+|+++|+..+|..|+..+.++...+++
T Consensus 99 ~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 99 TIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 6899999999999999999988765543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.6e-06 Score=74.88 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=64.1
Q ss_pred CcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCC---C----CCCCcccEEEEccc
Q 046220 386 SKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNL---F----PGDFDMPFVTVNLN 457 (774)
Q Consensus 386 ~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~---~----~~~~~~p~~~i~~~ 457 (774)
..+.|.+. +..+++|+|+|+ .||+|.|.+ |..+++++||+++|++|+ .+... . .....+|+++++.+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV--~RG~CsF~~-K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~ 100 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALV--LRGGCGFLD-KVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRT 100 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHH
Confidence 35789765 557899999999 999999999 999999999999999988 33211 1 22357999999999
Q ss_pred cHHHHHHHHHhC
Q 046220 458 NGELVKKYIINA 469 (774)
Q Consensus 458 ~g~~l~~~~~~~ 469 (774)
++..|+.++...
T Consensus 101 ~g~~L~~l~~~~ 112 (117)
T cd04813 101 SYHLLSSLLPKS 112 (117)
T ss_pred HHHHHHHhcccc
Confidence 999999887543
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=75.46 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=58.7
Q ss_pred CCCCcccEEEEEEEeCCCCc-----hhHHHHHHHHhcCceEEEEecCC---CCC--CCCC---CCcccEEEEccccHHHH
Q 046220 396 DPRAVAGKYIFCAFDYKGNI-----TVSQQLEEVRRTRAAGAIISADS---RQN--LFPG---DFDMPFVTVNLNNGELV 462 (774)
Q Consensus 396 ~~~~~~g~iv~~~~~~g~~~-----~~~~~~~~~~~~Ga~g~i~~n~~---~~~--~~~~---~~~~p~~~i~~~~g~~l 462 (774)
...+++|||+|+ +||.|. |.+ |.++++++||.++|+||+. +.. ...+ ...+|++.|++++|+.|
T Consensus 51 ~~~d~~GkIaLI--~RG~c~~~~~~f~~-Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L 127 (139)
T cd04817 51 ICGGMAGKICLI--ERGGNSKSVYPEID-KVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQAL 127 (139)
T ss_pred cCCCcCccEEEE--ECCCCCCCcccHHH-HHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHH
Confidence 345789999999 999999 999 9999999999999999993 321 1122 45899999999999999
Q ss_pred HHHHHhC
Q 046220 463 KKYIINA 469 (774)
Q Consensus 463 ~~~~~~~ 469 (774)
+..+...
T Consensus 128 ~~~l~~~ 134 (139)
T cd04817 128 LAALGQS 134 (139)
T ss_pred HHHhcCC
Confidence 9887543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=76.56 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=67.2
Q ss_pred cccccCCCCCC---CCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCC---CC-----CCCcccEEEEc
Q 046220 387 KEICEGNSTDP---RAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNL---FP-----GDFDMPFVTVN 455 (774)
Q Consensus 387 ~~~c~~~~~~~---~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~-----~~~~~p~~~i~ 455 (774)
.+.|.+....+ ..+.|+|+|+ +||.|.|.+ |..+++++||.++|++|+..... .. ....+|+++|+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV--~RG~CtF~~-Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLI--RRGNCSFET-KVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCCCcccccccccCCCeEEEE--ECCCCCHHH-HHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 56898666533 7899999999 999999999 99999999999999999832211 11 14589999999
Q ss_pred cccHHHHHHHHHhCCC
Q 046220 456 LNNGELVKKYIINADN 471 (774)
Q Consensus 456 ~~~g~~l~~~~~~~~~ 471 (774)
..+|..|+.++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=66.74 Aligned_cols=90 Identities=11% Similarity=-0.024 Sum_probs=68.5
Q ss_pred CCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCC--chhHHHHHHHHhcCceEEEEecC-CCCCC----C-
Q 046220 372 FVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGN--ITVSQQLEEVRRTRAAGAIISAD-SRQNL----F- 443 (774)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~--~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~----~- 443 (774)
...+.+++|.+.....+ +...+++|||+++ .++.+ .+.. |..+++++||.|+|++|+ ++... .
T Consensus 21 ~~~~~~lV~~g~G~~~d------~~~~~v~GkIvlv--~~g~~~~~~~~-k~~~A~~~GA~avi~~~~~~g~~~~~~~~~ 91 (127)
T cd04819 21 GEAKGEPVDAGYGLPKD------FDGLDLEGKIAVV--KRDDPDVDRKE-KYAKAVAAGAAAFVVVNTVPGVLPATGDEG 91 (127)
T ss_pred CCeeEEEEEeCCCCHHH------cCCCCCCCeEEEE--EcCCCchhHHH-HHHHHHHCCCEEEEEEeCCCCcCccccccc
Confidence 34577888866543222 2345799999999 99988 6777 999999999999999987 34221 0
Q ss_pred ---CCCCcccEEEEccccHHHHHHHHHhCC
Q 046220 444 ---PGDFDMPFVTVNLNNGELVKKYIINAD 470 (774)
Q Consensus 444 ---~~~~~~p~~~i~~~~g~~l~~~~~~~~ 470 (774)
.....+|++.|+.++|..|...++.+.
T Consensus 92 ~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 92 TEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999987654
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0047 Score=57.83 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCCcccEEEEEEEeCCCC------chhHHH-------HHHHHhcCceEEEEecC-CCC--------CCC-CCCCcccEEE
Q 046220 397 PRAVAGKYIFCAFDYKGN------ITVSQQ-------LEEVRRTRAAGAIISAD-SRQ--------NLF-PGDFDMPFVT 453 (774)
Q Consensus 397 ~~~~~g~iv~~~~~~g~~------~~~~~~-------~~~~~~~Ga~g~i~~n~-~~~--------~~~-~~~~~~p~~~ 453 (774)
..+++|||++. .++.| .+.. | .+.++++||.++|++|. ++. ... .....+|++.
T Consensus 35 ~~~v~GKIvlv--~~~~~~~~~~~~~~~-k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 35 AGAVKGKIVFF--NQPMVRTQTGSGYGP-TVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred hhhcCCeEEEe--cCCccccCchhhcCc-hhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 56899999999 99999 7766 6 68999999999999985 221 111 1235699999
Q ss_pred EccccHHHHHHHHHhCCCcEE
Q 046220 454 VNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 454 i~~~~g~~l~~~~~~~~~~~~ 474 (774)
|+.+++..|...+..+...+.
T Consensus 112 is~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 112 ISVEDADMLERLAARGKPIRV 132 (134)
T ss_pred echhcHHHHHHHHhCCCCeEE
Confidence 999999999999887765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0059 Score=57.35 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=52.2
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCC------------------chhHHHHHHHHhcCceEEEE
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGN------------------ITVSQQLEEVRRTRAAGAII 434 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~------------------~~~~~~~~~~~~~Ga~g~i~ 434 (774)
....++||.+.......|....+...+++|||||+ .++.| .+.. |.++++++||.|+|+
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv--~~g~P~~~~~~~~~~~~~~~~~~~~~~-K~~~A~~~GA~gvIi 95 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVV--LRNDPQGEPGAGDFGGKAMTYYGRWTY-KYEEAARHGAAGVLI 95 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhcCCCCCCCcEEEE--EcCCCCcccccccccccccccccCHHH-HHHHHHHCCCcEEEE
Confidence 35678999887766677888888888999999999 88877 3445 999999999999999
Q ss_pred ecC
Q 046220 435 SAD 437 (774)
Q Consensus 435 ~n~ 437 (774)
+++
T Consensus 96 i~~ 98 (142)
T cd04814 96 VHE 98 (142)
T ss_pred EeC
Confidence 998
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.019 Score=54.52 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=61.5
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCC------------------CchhHHHHHHHHhcCceEEEE
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKG------------------NITVSQQLEEVRRTRAAGAII 434 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~------------------~~~~~~~~~~~~~~Ga~g~i~ 434 (774)
..+-++||.+.......|....+..-+++|||||+ .++. |.+.. |..+++..||.|+|+
T Consensus 19 ~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv--~~g~P~~~~~~~~~~~~~~~~~~~~~~-K~~~A~~~GA~aVIv 95 (151)
T cd04822 19 AVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLV--LRHEPQEDDANSRFNGPGLTRHAGLRY-KATNARRHGAAAVIV 95 (151)
T ss_pred CceEeEEEecCCcCccccchhhccCCCCCCeEEEE--EcCCcccccccccccccccccccCHHH-HHHHHHHCCCeEEEE
Confidence 34678899887766777877777788999999999 7663 34455 999999999999999
Q ss_pred ecCCCCC-----CCCCCCcccEEEEccccHHHHHH
Q 046220 435 SADSRQN-----LFPGDFDMPFVTVNLNNGELVKK 464 (774)
Q Consensus 435 ~n~~~~~-----~~~~~~~~p~~~i~~~~g~~l~~ 464 (774)
+++.... .......-..++++....+.+..
T Consensus 96 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 96 VNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred EeCCcccCcccccccccCccceEEechHHHHHHhh
Confidence 9983221 11111122256666665555554
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.006 Score=59.67 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=63.2
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC---CCC--------
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS---RQN-------- 441 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~---~~~-------- 441 (774)
..+-+++|.+.....++ ........+++|||+|+ .++.|.+.. |.++|+++||+|+|+|++. ...
T Consensus 28 ~v~g~lVyvn~G~~~Df-~~L~~~gv~v~GkIvLv--r~G~~~~~~-Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g 103 (183)
T cd02128 28 TVTGKLVYANYGRKKDF-EDLQSVGVSVNGSVVLV--RAGKISFAE-KVANAEKLGAVGVLIYPDPADFPIDPSETALFG 103 (183)
T ss_pred ceEEEEEEcCCCCHHHH-HHHHhcCCCCCCeEEEE--ECCCCCHHH-HHHHHHHCCCEEEEEecCHHHcCcccCcceeec
Confidence 34567787643322111 00111245789999999 999998888 9999999999999999882 110
Q ss_pred ---------CC-------------C---CCCcccEEEEccccHHHHHHHHHh
Q 046220 442 ---------LF-------------P---GDFDMPFVTVNLNNGELVKKYIIN 468 (774)
Q Consensus 442 ---------~~-------------~---~~~~~p~~~i~~~~g~~l~~~~~~ 468 (774)
+. . ....||++-|+..++..|++.+.-
T Consensus 104 ~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 104 HVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 00 0 123588999999999999988753
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0097 Score=55.52 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=52.1
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCc------------hhHHHHHHHHhcCceEEEEecCC
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNI------------TVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~------------~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
..+-++||.+.......|....+...+++|||||+ .++.|. +.. |.++++++||.|+|+++++
T Consensus 21 ~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv--~~g~p~~~~~~~~~~~~~~~~-K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 21 SVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVV--LSGGPAGIPSEEGAHAHSSNE-KARYAAKAGAIGMITLTTP 95 (137)
T ss_pred CceEeEEEecCCcCccCcCHhhccCCCCCCeEEEE--EcCCCCccccccccccccHHH-HHHHHHHCCCeEEEEEeCC
Confidence 34678898887766678887777788999999999 888763 445 9999999999999999984
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.24 Score=43.73 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEEEeeC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVN 755 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 755 (774)
.....+.+|+|.|..+..|++.......-.++++|..=.+ ++|++.++.|++.... . .+.+.+.|... ..
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~-------~g~~~~~l~i~-~e 89 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-P-------LGDYEGSLVIT-TE 89 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-C-------CceEEEEEEEE-EC
Confidence 5678889999999999999987654334567778877667 7999999999999654 1 34678888772 34
Q ss_pred CeeEEEEEEEEE
Q 046220 756 GKHQVRSPIVSA 767 (774)
Q Consensus 756 ~~~~v~~P~~~~ 767 (774)
+ ..+.+|+-+.
T Consensus 90 ~-~~~~i~v~a~ 100 (102)
T PF14874_consen 90 G-GSFEIPVKAE 100 (102)
T ss_pred C-eEEEEEEEEE
Confidence 4 4677777654
|
|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.046 Score=59.89 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=63.5
Q ss_pred CCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC--------CCCCCCCCCcccEEEEccccHHHHHHHHHh
Q 046220 397 PRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS--------RQNLFPGDFDMPFVTVNLNNGELVKKYIIN 468 (774)
Q Consensus 397 ~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~--------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 468 (774)
....++|+++. .||.|.|.+ |...++++||.++++.|+. ++........||++++.+++++.+.....+
T Consensus 91 ~~kl~~~~~~v--~RGnC~Ft~-Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 91 QSKLSGKVALV--FRGNCSFTE-KAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CccccceeEEE--ecccceeeh-hhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 45688999999 999999999 9999999999999999981 233334467899999999999999987666
Q ss_pred CCCcEEEE
Q 046220 469 ADNATVSI 476 (774)
Q Consensus 469 ~~~~~~~i 476 (774)
+.+.++.+
T Consensus 168 ~~~V~~~l 175 (541)
T KOG2442|consen 168 NDNVELAL 175 (541)
T ss_pred CCeEEEEE
Confidence 66655544
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.12 Score=43.41 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=38.8
Q ss_pred ceEEEEEEEEecCCCc-eEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCC
Q 046220 676 ASFTFKRVLTNVAVTR-SVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGN 734 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~-~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~ 734 (774)
...+++.+|+|.|..+ ...++++..|+|-.+...|..+.--++|++++++++|+++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 5789999999999765 4688999999999988888887644899999999999998643
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.12 Score=48.61 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=45.3
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
+.+-++||.+.....++-.-.. .-+++|||+|+ ..|...+.. |.++|+..||.|+|+|.++
T Consensus 14 ~Vtg~~VYvNyG~~eDf~~L~~--~V~v~GkIvi~--RyG~~~RG~-Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 14 TLQAEVVDVQYGSVEDLRRIRD--NMNVTNQIALL--KLGQAPLLY-KLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred ceEEEEEEecCCCHHHHHHHHh--CCCccceEEEE--eccCcchHH-HHHHHHHCCCeEEEEecCh
Confidence 3466778866554433322111 25799999999 888888888 9999999999999999883
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.2 Score=50.80 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=43.6
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD 437 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~ 437 (774)
..+-++||.+.....+.- ......-+++|||+|+ .++.+.+.. |.++|+.+||+|+|++++
T Consensus 44 ~v~g~lVyvnyG~~~D~~-~L~~~gvdv~GKIvLv--r~G~~~~~~-Kv~~A~~~GA~gVIiy~D 104 (220)
T cd02121 44 NVTAELVYANYGSPEDFE-YLEDLGIDVKGKIVIA--RYGGIFRGL-KVKNAQLAGAVGVIIYSD 104 (220)
T ss_pred CceEEEEEcCCCcHHHHH-HHhhcCCCCCCeEEEE--ECCCccHHH-HHHHHHHcCCEEEEEEeC
Confidence 346788886532221110 0001246799999999 888887777 999999999999999988
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=92.62 E-value=2.7 Score=38.23 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=41.9
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGN 734 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~ 734 (774)
-.-..+.+|+|....+.+|++++..++|+.+......+.+ ++|++.++.|.|..+...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 3457788999999999999999999889999666688999 799999999999998743
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.29 Score=45.63 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=70.4
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCC-C----------C
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQ-N----------L 442 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~-~----------~ 442 (774)
.+++|.+ +...+|.... +.-...+.+++. +||.|+|.. |..++.++||..+|+..+ +.+ . .
T Consensus 65 ~~~lV~a---dPp~aC~elr-N~~f~~d~vaL~--eRGeCSFl~-Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 65 NLELVLA---DPPHACEELR-NEIFAPDSVALM--ERGECSFLV-KTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred Ccceeec---CChhHHHHHh-hcccCCCcEEEE--ecCCceeee-hhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 4455553 3456775432 234567889999 999999999 999999999999999876 221 1 1
Q ss_pred CCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEec
Q 046220 443 FPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQ 479 (774)
Q Consensus 443 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 479 (774)
.-+...+|++++-..+|..+...+......-+.|..+
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 1235789999999999988887777766655555443
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.3 Score=47.73 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=61.2
Q ss_pred cccccCCCC---CCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC--C----CCCCCcccEEEEccc
Q 046220 387 KEICEGNST---DPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN--L----FPGDFDMPFVTVNLN 457 (774)
Q Consensus 387 ~~~c~~~~~---~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~--~----~~~~~~~p~~~i~~~ 457 (774)
.++|.+... ........+++. .||+|.|.+ |..+|+.+|..++|+||+.+.. . ......+++++++..
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI--~Rg~CsFe~-Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~ 138 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALI--RRGGCSFED-KVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVF 138 (348)
T ss_pred ccccCccccCccCCCCCcceEEEE--EccCCchHH-HHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeee
Confidence 367765433 234456678999 999999999 9999999999999999983332 1 233577889999999
Q ss_pred cHHHHHHHHHhC
Q 046220 458 NGELVKKYIINA 469 (774)
Q Consensus 458 ~g~~l~~~~~~~ 469 (774)
.|+.+.+|....
T Consensus 139 ~ge~l~~~~~~~ 150 (348)
T KOG4628|consen 139 SGELLSSYAGRT 150 (348)
T ss_pred hHHHHHHhhccc
Confidence 999999876544
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=88.03 E-value=19 Score=32.81 Aligned_cols=54 Identities=11% Similarity=-0.003 Sum_probs=41.7
Q ss_pred eEEEEEEEEecCCCceEEEEEEEC---CCC----cEEEEecceEEEecCCceEEEEEEEEecc
Q 046220 677 SFTFKRVLTNVAVTRSVYTAVVKA---PAG----MTVAVQPVTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 677 ~~~~~rtv~n~~~~~~ty~~~~~~---p~g----~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
....+.+|+|.++.+..+.+.+.. .++ -.+-|+|..+.+ ++|+++.+.| +....
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~ 75 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK 75 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC
Confidence 457789999999987777777764 111 257799999999 7999999999 76443
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=87.88 E-value=1.3 Score=42.55 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=41.9
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCC------------------chhHHHHHHHHhcCceEEEEe
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGN------------------ITVSQQLEEVRRTRAAGAIIS 435 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~------------------~~~~~~~~~~~~~Ga~g~i~~ 435 (774)
..-++||.+.......-....+..-|++||||++ ..+.- .+...|.+.+++.||.|+|++
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvv--l~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVI--LVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEE--EcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 4557777665433322223355567899999999 65432 122348999999999999999
Q ss_pred cC
Q 046220 436 AD 437 (774)
Q Consensus 436 n~ 437 (774)
+.
T Consensus 100 ~~ 101 (157)
T cd04821 100 HE 101 (157)
T ss_pred eC
Confidence 76
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.01 E-value=6.5 Score=43.65 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=52.7
Q ss_pred ceEEEEEEEEecCCCceE-EEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCC
Q 046220 676 ASFTFKRVLTNVAVTRSV-YTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGND 735 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t-y~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~ 735 (774)
...+....+.|.|+.+.| -.+++..|.|-.+.|+|.++---+++|++++++|++++....
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~ 457 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAG 457 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCC
Confidence 467888999999998765 679999999999999999887779999999999999987554
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=86.27 E-value=17 Score=33.24 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=50.7
Q ss_pred ceEEEEEEEEecCCCceEEEEEEEC----CCCc--------------------EEEEecceEEEecCCceEEEEEEEEec
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKA----PAGM--------------------TVAVQPVTLSFDEKHSKAEFNLTVNIN 731 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~----p~g~--------------------~v~v~p~~l~~~~~~~~~~~~vt~~~~ 731 (774)
.+.+++.+|+|.++.+.+|.+.+.. ..|+ -|++ |..+++ +++|+++++++|+.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 6889999999999999999988631 1110 1222 334788 799999999999998
Q ss_pred cCCCCCCCCCCccEEEEEEE
Q 046220 732 LGNDVSPKRNYLGNFGYLTW 751 (774)
Q Consensus 732 ~~~~~~~~~~~~~~~G~~~~ 751 (774)
.... .+.+-|.|.+
T Consensus 105 ~~~f------~G~ilGGi~~ 118 (121)
T PF06030_consen 105 KKAF------DGIILGGIYF 118 (121)
T ss_pred CCCc------CCEEEeeEEE
Confidence 8655 6777787877
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.05 E-value=0.95 Score=53.72 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=36.9
Q ss_pred EecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEEEee---CCeeEEEEEEEEEE
Q 046220 708 VQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEV---NGKHQVRSPIVSAF 768 (774)
Q Consensus 708 v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~v~~P~~~~~ 768 (774)
-.|+.|.+ .++.+.+.|+|++.... .+..++.|.=..+ ...+.+|+|+.|.-
T Consensus 634 q~p~~l~l--~~~~R~i~VrVDpt~l~-------~G~hy~eV~gyD~~~p~~gplFrIPVTVi~ 688 (1304)
T KOG1114|consen 634 QCPEYLML--ANQGRGINVRVDPTGLA-------PGVHYTEVLGYDTANPSRGPLFRIPVTVIK 688 (1304)
T ss_pred eCchhhee--ccCCceeEEEECCcCCC-------CCcceEEEEEeecCCcccCceEEeeeEEEc
Confidence 34666666 67888999999988733 4566666666433 35799999998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 774 | ||||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-150 | ||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-109 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 6e-14 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 1e-11 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 8e-10 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 4e-08 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 5e-08 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 2e-07 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 2e-07 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 2e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 2e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 2e-07 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 2e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 4e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 5e-07 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 5e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 6e-07 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 8e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 8e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 9e-07 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 1e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 1e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 1e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 1e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 2e-06 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 3e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 4e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 4e-06 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 9e-06 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 2e-05 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 3e-05 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 3e-05 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 3e-05 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 4e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 5e-05 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 1e-04 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 3e-04 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 2e-04 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 3e-04 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 3e-04 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 3e-04 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 3e-04 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 4e-04 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 8e-04 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 8e-04 |
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 659 bits (1700), Expect = 0.0
Identities = 299/658 (45%), Positives = 388/658 (58%), Gaps = 21/658 (3%)
Query: 112 TTHTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEV 171
TTHT F+ L +GLWPA+G G DVIV V+DSG+WPES SF+DDGMP +P+RW+G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 172 GVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQN 231
G +FNAS CNRKLIGA FNKG+ ++ +S RD GHGTH +S AG+ +
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNI--TMNSARDTDGHGTHCASITAGNFAKG 118
Query: 232 ANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGF 291
++FGYA GTA GVAP AR+A+YK +F T + D++A MDQA+ADGVD++S+S G+
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTS---DLIAAMDQAVADGVDMISISYGY 175
Query: 292 PETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAAR 351
E+ I+I +F A+ KG+ V+ SAGN GP S+ NG+PWI V +G DR FA
Sbjct: 176 RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235
Query: 352 VTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDY 411
+TLGN + G S++P FV P+ + S E + + C
Sbjct: 236 LTLGNGL-KIRGWSLFPARAFVRDSPVIYN-KTLSDCSSEELLSQVENPENTIVIC---- 289
Query: 412 KGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADN 471
N S Q+ + R R AI ++ F P V VN G+ V Y+ N+
Sbjct: 290 DDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVT 349
Query: 472 ATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATI 531
T +I FQ T L TKP+P VA S+RGPS I KPDILAPGV IL A+ PN +I
Sbjct: 350 PTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 532 RDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMI 591
L T+Y LESGTSM+ PHAAGIA +LKA H EWS +AIRSAMMTTAD LDN I
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 592 ADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTS- 650
D A TPLD GAGH++PN+A+DPGLVYD QDY+N LC+LN+T +Q + + +S
Sbjct: 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA 529
Query: 651 NFTCEHGNLDLNYPSFIIILN---NTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVA 707
+ C + + DLNYPSFI + + N FKR +TNV + Y A +KAP T++
Sbjct: 530 SHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTIS 589
Query: 708 VQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIV 765
V P L F K+ K + LT+ N G +TW E NG H VRSPIV
Sbjct: 590 VSPQILVFKNKNEKQSYTLTI------RYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 607 bits (1565), Expect = 0.0
Identities = 235/663 (35%), Positives = 347/663 (52%), Gaps = 56/663 (8%)
Query: 112 TTHTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEV 171
TT + F+G + + S+++VGV+D+G+WPESPSF D+G P P +W+G CE
Sbjct: 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 172 GVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQN 231
F CNRK+IGARS++ G + D + PRD GHGTHT+ST AG V
Sbjct: 59 SNNF---RCNRKIIGARSYHIGRP------ISPGDVNGPRDTNGHGTHTASTAAGGLVSQ 109
Query: 232 ANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGF 291
AN +G GTA G P+ARIA YK+ + + D+LA D AIADGVD++SLS+G
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDT---DILAAYDDAIADGVDIISLSVGG 166
Query: 292 P-ETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAA 350
+ + IAIG+F A+++GI + SAGN GP ++ + +PW+ +V A T+DR+F
Sbjct: 167 ANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226
Query: 351 RVTLGNEELSVIGKSVYPEN-----LFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYI 405
+V +GN + S G S+ + L R+ G+ + C S +P + GK +
Sbjct: 227 QVQIGNGQ-SFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIV 285
Query: 406 FCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKY 465
C + + A ++ + ++ + + +P ++ N+ +Y
Sbjct: 286 VCEASFGPHEFFKSLD-------GAAGVLMTSNTRD-YADSYPLPSSVLDPNDLLATLRY 337
Query: 466 IINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPN 525
I + + +I TI +P V FSSRGP+ + ++KPDI PGV+IL AW
Sbjct: 338 IYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSV 396
Query: 526 RPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585
P+ IR T + + SGTSMSCPH GIAT +K + WS AAI+SA+MTTA ++
Sbjct: 397 APVGGIR----RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 452
Query: 586 NAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRV 645
+G+GH+NP KA+ PGLVYD DY+ +LC Y +Q +R
Sbjct: 453 A---------RFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRR 503
Query: 646 LTGTSNFTCEHGN---LDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPA 702
+TG + DLNYPSF + ++ + T + F R LT+VA S Y A++ AP
Sbjct: 504 ITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQ 563
Query: 703 GMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRS 762
G+T++V P LSF+ + F LTV ++ V L W +G H VRS
Sbjct: 564 GLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVV--------SASLVW--SDGVHYVRS 613
Query: 763 PIV 765
PI
Sbjct: 614 PIT 616
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 460 bits (1184), Expect = e-150
Identities = 121/628 (19%), Positives = 206/628 (32%), Gaps = 80/628 (12%)
Query: 126 GLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFN----ASHCN 181
L AG G+ +V VID+G +++ + + E + + N
Sbjct: 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVN 67
Query: 182 RKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGT 241
K+ ++ HGTH S ++G NA
Sbjct: 68 DKVAYYHDYS--------------KDGKTAVDQEHGTHVSGILSG----NAPSETKEPYR 109
Query: 242 AIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFD--EN 299
G P A++ + ++ + L A + + AI G V+++S G + +
Sbjct: 110 LEGAMPEAQLLLMRV-EIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPD 168
Query: 300 PIAIGAFAALKKGIFVACSAGNSGPRPYSIE---------------NGAPWITTVGAGTV 344
A KG+ + SAGN A TV + +
Sbjct: 169 ETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSP 228
Query: 345 DREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKY 404
D++ V + + V N F + + Y N D + V GK
Sbjct: 229 DKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYAN-----RGTKEDDFKDVKGKI 283
Query: 405 IFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNL---FPGDFDMPFVTVNLNNGEL 461
G+I ++ + ++ A G +I + + P MP ++ +G L
Sbjct: 284 ALIER---GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLL 340
Query: 462 VKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGA 521
+K T++ +L T ++++FSS G + + +KPDI APG DIL +
Sbjct: 341 LKDNP----QKTITFNATPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSS 394
Query: 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581
N +YA SGTSMS P AGI LL+ + S + A
Sbjct: 395 VANN--------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLA 440
Query: 582 -DVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTS 640
VL ++ + D +P GAG ++ KA + + +D + LN S
Sbjct: 441 KKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVS 498
Query: 641 QQIRVLTGTSNFTCEHGNLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKA 700
+ V N + + L T+ + V S + A
Sbjct: 499 DKFEVTVNVHNKSDKPQELYYQATV------QTDKVDGKHFALAPKVLYETSWQKITIPA 552
Query: 701 PAGMTVAVQPVTLSFDEKHSKAEFNLTV 728
+ V V F + N
Sbjct: 553 NSSKQVTVPIDASRFSKDLLAQMKNGYF 580
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 86/499 (17%), Positives = 149/499 (29%), Gaps = 108/499 (21%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
+ + +IDSG + +
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNA---------------------------NNVTGTNN--- 50
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
S T ++ P + HGTH + TIA AN G GV P +
Sbjct: 51 --------SGTGNWYQPGNNNAHGTHVAGTIAAI----ANNEGVV-----GVMPNQNANI 93
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAI-ADGVDVMSLSLGFPE-TTFDENPIAIGAFAALKK 311
+ + +N+ + ++A +D + + G +V+++SLG TT + N +
Sbjct: 94 HIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNN 149
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNE-ELSVIGK---SVY 367
G+ + +AGN+G YS + +V A + + AA ++ E+S G+ S
Sbjct: 150 GVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTV 209
Query: 368 PENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRT 427
+ G S + N P + G +
Sbjct: 210 TVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSC 269
Query: 428 RAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQ-------- 479
I R + T + +
Sbjct: 270 GNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDI 329
Query: 480 -ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLL 538
+ + + +A + G S + G
Sbjct: 330 TVPSVSVDRATGLALKAKLGQST--------TVSNQGNQ--------------------- 360
Query: 539 TEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGV 598
+Y +GTSM+ PH +G+ATL+ + H E S++ +R+A+ TAD L V
Sbjct: 361 -DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDL------------SV 407
Query: 599 AGTPLDFGAGHINPNKAMD 617
AG G G IN A
Sbjct: 408 AGRDNQTGYGMINAVAAKA 426
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 6e-22
Identities = 48/240 (20%), Positives = 79/240 (32%), Gaps = 40/240 (16%)
Query: 485 TKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALE 544
K V ++SR P + APG I +++ L
Sbjct: 413 EKLPGNVYTWTSRDP--CIDGGQGVTVCAPGGAIASVPQFT------------MSKSQLM 458
Query: 545 SGTSMSCPHAAGIATL----LKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG 600
+GTSM+ PH AG L LK + E+S +I+ A+ TA L
Sbjct: 459 NGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV------------- 505
Query: 601 TPLDFGAGHINPNKAMDPGLVYDIEVQDYINY-LCALNYTSQQIRVLTGTSNFTCEHG-N 658
P G G +N KA + + + + + + N + I + G + ++
Sbjct: 506 DPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRNSIDYNVY 565
Query: 659 LDLNYPSFIIILNNTNTASFTFKRVLTNVA----VTRSVYTAVVKAPAGMTVAVQPVTLS 714
++ P F F F L +A V + + + V V P L
Sbjct: 566 IE---PIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 3e-18
Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 206 DYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKA 265
+ HGTH SS +G+ + GVAP A+I I
Sbjct: 262 VLEVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIGDGRLGSME 312
Query: 266 AAVDVLAGMDQAI-----ADGVDVMSLSLGFPETTFDENPIAIGA-FAALKKGIFVACSA 319
++ M + + +DV+++S G + I K G+ SA
Sbjct: 313 TGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASA 372
Query: 320 GNSGPRPYSIENGA----PWITTVGAGTVDREFAAR 351
GN GP ++ P + VGA + A
Sbjct: 373 GNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAE 408
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 2e-21
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 55/228 (24%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
W GS + +G+ID+G+ P + K+IG
Sbjct: 132 WNLGYDGSGITIGIIDTGIDASHPDLQG---------------------------KVIGW 164
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
F +P D GHGTH +S AG+ A+ Y G+AP
Sbjct: 165 VDF-------------VNGKTTPYDDNGHGTHVASIAAGTG--AASNGKYK-----GMAP 204
Query: 248 MARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD----GVDVMSLSLGFPETTFDENPIAI 303
A++ K+ N + D++ G+D A+ + G+ V++LSLG +++ + ++
Sbjct: 205 GAKLVGIKVL--NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQ 262
Query: 304 GAFAALKKGIFVACSAGNSGPRPYSIEN--GAPWITTVGAGTVDREFA 349
A G+ V +AGNSGP Y++ + A + TVGA
Sbjct: 263 AVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVIT 310
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 4e-21
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 30/221 (13%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
+ FSSRGP+ + LKP+++APG I+ A + + Y GT+M
Sbjct: 308 VITDFSSRGPTADN--RLKPEVVAPGNWIIAARASGTSMGQPIN-----DYYTAAPGTAM 360
Query: 550 SCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGH 609
+ PH AGIA LL H W+ +++A++ TAD++ + +GAG
Sbjct: 361 ATPHVAGIAALLLQAHPSWTPDKVKTALIETADIV-----------KPDEIADIAYGAGR 409
Query: 610 INPNKAMDPGLVYDIEVQDYI--NYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPSFI 667
+N KA + Y+ + +T +T T + +LDL
Sbjct: 410 VNAYKAAYYDNYAKLTFTGYVSNKGSQSHQFTISGAGFVTATLYWDNSGSDLDLY----- 464
Query: 668 IILNNTNTASFTFKRVLTNVAVTRSV-----YTAVVKAPAG 703
+ N N +++ V +T V + +G
Sbjct: 465 LYDPNGNQVDYSYTAYYGFEKVGYYNPTAGTWTIKVVSYSG 505
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 55/229 (24%), Positives = 83/229 (36%), Gaps = 63/229 (27%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L GS+V V VIDSG+ ++SH + K+ G
Sbjct: 16 LHSQGYTGSNVKVAVIDSGI-----------------------------DSSHPDLKVAG 46
Query: 187 ARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVA 246
S + + +D HGTH + T+A N G GVA
Sbjct: 47 GASMVPS------------ETNPFQDNNSHGTHVAGTVAAL----NNSIGVL-----GVA 85
Query: 247 PMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE--TTFDENPIAIG 304
P A + K+ ++ G++ AIA+ +DV+++SLG P A+
Sbjct: 86 PSASLYAVKVL--GADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKA---AVD 140
Query: 305 AFAALKKGIFVACSAGNSGPRPYSIENG----APWITTVGAGTVDREFA 349
A+ G+ V +AGN G S G P + VGA + A
Sbjct: 141 --KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRA 187
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 4e-19
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 37/138 (26%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP + D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
Y +GTSM+ PH AG A L+ + H W++ +RS++ T L
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL--------------- 257
Query: 600 GTPLDFGAGHINPNKAMD 617
G +G G IN A
Sbjct: 258 GDSFYYGKGLINVQAAAQ 275
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 51/228 (22%), Positives = 83/228 (36%), Gaps = 64/228 (28%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
G++V V V+D+G+ ASH + ++G
Sbjct: 17 QAQGFKGANVKVAVLDTGI-----------------------------QASHPDLNVVGG 47
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
SF D GHGTH + T+A N G GVAP
Sbjct: 48 ASF-------------VAGEAYNTDGNGHGTHVAGTVAAL----DNTTGVL-----GVAP 85
Query: 248 MARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE--TTFDENPIAIGA 305
+ K+ N + + +++G++ A +G+DV+++SLG T + A+
Sbjct: 86 SVSLYAVKVL--NSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQ---AVD- 139
Query: 306 FAALKKGIFVACSAGNSGPRPYSIENG----APWITTVGAGTVDREFA 349
A +G+ V +AGNSG + G + VGA + A
Sbjct: 140 -NAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRA 186
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 37/136 (27%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + + A FSS G + +++APG + + N
Sbjct: 174 IAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPTNT------------- 212
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
YA +GTSM+ PH AG A L+ + H S++ +R+ + +TA L
Sbjct: 213 -YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL--------------- 256
Query: 600 GTPLDFGAGHINPNKA 615
G+ +G G IN A
Sbjct: 257 GSSFYYGKGLINVEAA 272
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 2e-19
Identities = 50/300 (16%), Positives = 87/300 (29%), Gaps = 33/300 (11%)
Query: 488 SPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTE----YAL 543
+ +VA FSSR + + APGV IL I + Y
Sbjct: 325 TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376
Query: 544 ESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPL 603
GTSM+ PH G+ +L IR + TA G
Sbjct: 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDF------------NGNGWDH 424
Query: 604 DFGAGHINPNKAMDPGLVYDIEVQDY--INYLCALNYTSQQIRVLTGTSNFTCEHGNLDL 661
D G G + + A+ L V+++ + N+ + V N +C +
Sbjct: 425 DTGYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGP 484
Query: 662 N-------YPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLS 714
+ S + + + Y ++ + +S
Sbjct: 485 DGIARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVS 544
Query: 715 FDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFSVSNGQ 774
D FN T+ + ++S ++ V G+ S+ +GQ
Sbjct: 545 PDATQLNVNFNSTLQVKFSTNLSTLKDPQFVVVDPLLRGVYGRVAYARNQTYDLSLLSGQ 604
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-14
Identities = 41/197 (20%), Positives = 61/197 (30%), Gaps = 55/197 (27%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
G+++IV V+D+GV P + ++I
Sbjct: 153 GTNIIVAVVDTGVDGTHPDLEG---------------------------QVIAGYRPAFD 185
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
GTH + TIA + + G GVAP A+I
Sbjct: 186 --------EELPAGTDSSYGGSAGTHVAGTIAAKK----DGKGIV-----GVAPGAKIMP 228
Query: 254 YKIAFYNDTLKA----AAVDVLAGMDQAIADGVDVMSLSLGFPE--TTFDENPIAIGAFA 307
I + V AG+ A G VM+ S G T E A
Sbjct: 229 IVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE---AFD--Y 283
Query: 308 ALKKGIFVACSAGNSGP 324
A++ G+ + SAGN+
Sbjct: 284 AMEHGVVMVVSAGNNTS 300
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 3e-19
Identities = 42/237 (17%), Positives = 67/237 (28%), Gaps = 49/237 (20%)
Query: 127 LWPAAGF-GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLI 185
+ G G IV V D+G+ +RG K+
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEA------FRG---------------KIT 51
Query: 186 GARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGV 245
+ ++ D GHGTH + ++ G+ T G+
Sbjct: 52 ALYALG--------------RTNNANDTNGHGTHVAGSVLGN-----------GSTNKGM 86
Query: 246 APMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGA 305
AP A + I L ++ QA + G + + S G
Sbjct: 87 APQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVD 146
Query: 306 FAALKKGIFVACSAGNSGPRPYSIEN--GAPWITTVGAGTVDREFAARVTLGNEELS 360
K + + +AGN GP +I A TVGA R ++
Sbjct: 147 DYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVA 203
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 4e-18
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 484 GTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYAL 543
VA+FSSRGP+ +KPD++APG IL A P ++ ++YA
Sbjct: 195 YADNINHVAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDSSFWANHD--SKYAY 250
Query: 544 ESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPL 603
GTSM+ P AG L+ + + +++ A ++ A D+ G+
Sbjct: 251 MGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAA-LIAGAADI------GLGYPNG 303
Query: 604 DFGAGHINPNKAMDPGLVYD 623
+ G G + +K+++ V +
Sbjct: 304 NQGWGRVTLDKSLNVAYVNE 323
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 5e-19
Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 23/136 (16%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLR----SPWILKPDILAPGVDILGAWVPNRPIATIRDIG 535
+ + + +VA +SSRG +I APG + W
Sbjct: 192 LENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG--------- 242
Query: 536 KLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADIS 595
Y SGTSM+ PH +G+A + A + S+ +RS + A +D I
Sbjct: 243 -----YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD-----IKGGY 292
Query: 596 TGVAGTPLDFGAGHIN 611
G G G
Sbjct: 293 GAAIGDDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 8e-19
Identities = 47/223 (21%), Positives = 73/223 (32%), Gaps = 59/223 (26%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
+ GS + + V+D+GV P + +
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN---------------------------NVEQC 51
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
+ F TT +S D GHGTH + T ++ G GVAP
Sbjct: 52 KDFTGA---------TTPINNSCTDRNGHGTHVAGTALADG--GSDQAGIY-----GVAP 95
Query: 248 MARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGV-----DVMSLSLGFPE--TTFDENP 300
A + YK D+ + D+ A + A ++S+SLG +
Sbjct: 96 DADLWAYK--VLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISS-- 151
Query: 301 IAIGAFAALKKGIFVACSAGNSGPRPYSIEN--GAPWITTVGA 341
A+ A KG+ + +AGNSG +I P V A
Sbjct: 152 -AVN--YAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA 191
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 7e-19
Identities = 54/335 (16%), Positives = 98/335 (29%), Gaps = 84/335 (25%)
Query: 33 YIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKN 92
Y+V + + + L + ++ G L+ ++ ++ GF +S L+
Sbjct: 78 YVVVLKEETHLSQSERTARR----LQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLEL 133
Query: 93 LQKMPGHHGTYLETFGHLHTTHTPKFVGL------KKHAGLWPAAGFGSDVIVGVIDSGV 146
K+P H Y+E + P L + A + GS V V ++D+ +
Sbjct: 134 ALKLP--HVDYIEEDSSVFAQSIP--WNLERITPPRYRADEYQPPDGGSLVEVYLLDTSI 189
Query: 147 WPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206
+ E R ++ T
Sbjct: 190 QSDHR----------------------EIE----GRVMVTDFENVPE-------EDGTRF 216
Query: 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAA 266
+ HGTH + ++G GVA A + ++ N K
Sbjct: 217 HRQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRV--LNCQGKGT 260
Query: 267 AVDVLAGMDQAIADGVD------VMSLSLGFPE-TTFDENPIAIGAFAALKKGIFVACSA 319
L G++ + V+ L L + A + G+ + +A
Sbjct: 261 VSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNA---ACQ--RLARAGVVLVTAA 315
Query: 320 GNSGPR-----PYSIENGAPWITTVGAGTVDREFA 349
GN P S AP + TVGA +
Sbjct: 316 GNFRDDACLYSPAS----APEVITVGATNAQDQPV 346
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 6e-12
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS 569
D+ APG DI+GA T + +SGTS + H AGIA ++ + E +
Sbjct: 360 DLFAPGEDIIGASSDCS------------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELT 407
Query: 570 SAAIRSAMMTTA--DVLDNAYDMIADISTGVAGTP 602
A +R ++ + DV++ A TP
Sbjct: 408 LAELRQRLIHFSAKDVINEA----WFPEDQRVLTP 438
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 52/225 (23%), Positives = 80/225 (35%), Gaps = 61/225 (27%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
GS V V V+D+G+ ++H + + G
Sbjct: 16 AHNRGLTGSGVKVAVLDTGI------------------------------STHPDLNIRG 45
Query: 187 ARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVA 246
SF S +D GHGTH + TIA N G GVA
Sbjct: 46 GASF-------------VPGEPSTQDGNGHGTHVAGTIAAL----NNSIGVL-----GVA 83
Query: 247 PMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE--TTFDENPIAIG 304
P A + K+ + + + G++ A +G+ V +LSLG P T ++ A+
Sbjct: 84 PSAELYAVKVL--GASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ---AVN 138
Query: 305 AFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFA 349
+A +G+ V ++GNSG S VGA + A
Sbjct: 139 --SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRA 181
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 37/136 (27%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
+ + T + A FS G L DI+APGV++ + +
Sbjct: 169 MAVGATDQNNNRASFSQYGAGL--------DIVAPGVNVQSTYPGST------------- 207
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
YA +GTSM+ PH AG A L+K + WS+ IR+ + TA L
Sbjct: 208 -YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL--------------- 251
Query: 600 GTPLDFGAGHINPNKA 615
G+ +G+G +N A
Sbjct: 252 GSTNLYGSGLVNAEAA 267
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 17/227 (7%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L + + +ID F+ + V W E + + I
Sbjct: 41 LHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEP--ITPEDYAAFQSIR 98
Query: 187 ARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVA 246
+ K+ L+ + D H H +STI G G+A
Sbjct: 99 DQGLKGKEKEEALE-AVIPDTKDRIVLNDHACHVTSTIVGQE---------HSPVF-GIA 147
Query: 247 PMARIAMYKI---AFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAI 303
P R+ N + +++ +D A+ G +++ + P T + I +
Sbjct: 148 PNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILV 207
Query: 304 GAF-AALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFA 349
A + + GN+ + + P VGA VD
Sbjct: 208 QAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPC 254
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 3e-17
Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 32/132 (24%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
FS+ G + K ILAPG +ILGA E +GTSM
Sbjct: 252 TPCHFSNWGGN-----NTKEGILAPGEEILGAQPCTE-------------EPVRLTGTSM 293
Query: 550 SCPHAAGIATLLKATHHE----WSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDF 605
+ P GI+ LL + + + A+R+A++ TA V P
Sbjct: 294 AAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAI----------PCDPEVVEEPERC 343
Query: 606 GAGHINPNKAMD 617
G +N AM
Sbjct: 344 LRGFVNIPGAMK 355
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-17
Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 65/236 (27%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
+W A+ G+ I+GVID+G + P + ++IG
Sbjct: 33 VWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIG 65
Query: 187 ARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVA 246
+ D + D GHGTH + T+A + G GVA
Sbjct: 66 GVNLTTD---------YGGDETNFSDNNGHGTHVAGTVAAA----ETGSGVV-----GVA 107
Query: 247 PMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI------ADGVDVMSLSLGFPE--TTFDE 298
P A + + K + + + A+ + + ++++SLG P +
Sbjct: 108 PKADLFIIK--ALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD 165
Query: 299 NPIAIGAFAALKKGIFVACSAGNSGPRPYSIEN-----GAPWITTVGAGTVDREFA 349
A+ A+ + V C+AGN G + VGA D +
Sbjct: 166 ---AVK--YAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLS 216
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 39/143 (27%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + +++ F++ + DI+APGV I ++ +
Sbjct: 204 IAVGAVDFDLRLSDFTNTNEEI--------DIVAPGVGIKSTYLDSG------------- 242
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHE-----WSSAAIRSAMMTTADVLDNAYDMIADI 594
YA SGT+M+ PH AG L+ + S I + ++ A +
Sbjct: 243 -YAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPI---------- 291
Query: 595 STGVAGTPLDFGAGHINPNKAMD 617
G G ++ + +
Sbjct: 292 --GFTAQAEGNGFLTLDLVERIT 312
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 38/138 (27%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + ++A FS+ G + D++APGVDI+ NR
Sbjct: 180 IAVGAVDQYDRLASFSNYGTWV--------DVVAPGVDIVSTITGNR------------- 218
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
YA SGTSM+ PH AG+A LL + ++ IR A+ TAD +
Sbjct: 219 -YAYMSGTSMASPHVAGLAALLASQG--RNNIEIRQAIEQTADKIS-------------- 261
Query: 600 GTPLDFGAGHINPNKAMD 617
GT F G IN A+
Sbjct: 262 GTGTYFKYGRINSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 51/224 (22%), Positives = 69/224 (30%), Gaps = 57/224 (25%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
W S + VID+GV P + G +F
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIK------------GYDF------------ 59
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
DYD P D HGTH + A N G A G+AP
Sbjct: 60 ---------------VDNDYD-PMDLNNHGTHVAGIAAAET---NNATGIA-----GMAP 95
Query: 248 MARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE--TTFDENPIAIGA 305
RI + + D+ + A G +V++LSLG TT + A+
Sbjct: 96 NTRILAVR--ALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN---AVN- 149
Query: 306 FAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFA 349
A KG V +AGN+G + VGA A
Sbjct: 150 -YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLA 192
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 1e-16
Identities = 43/230 (18%), Positives = 68/230 (29%), Gaps = 54/230 (23%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
+ ++ + +ID+GV K+ +
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKN--------------------------NFSTDS 172
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
++ G + T D D GHGT S + A G IGVAP
Sbjct: 173 KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTS------------ANGKLIGVAP 220
Query: 248 MARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFA 307
+ MY++ + K + V + QA DG V+++S+G +
Sbjct: 221 NNKFTMYRVF---GSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDE 277
Query: 308 -------------ALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTV 344
A KK V +AGN G + G G V
Sbjct: 278 KVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEV 327
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 6e-14
Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 29/137 (21%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT--------EY 541
+++FS+ G + DI APG Y
Sbjct: 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 542 ALESGTSMSCPHAAGIATLLKATHH-EWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG 600
++GT+++ P +G L+ +H E + +N
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPF----------- 449
Query: 601 TPLDFGAGHINPNKAMD 617
+G G ++ KA++
Sbjct: 450 --SRYGHGELDVYKALN 464
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 38/138 (27%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + T + + FS+ G + D+ APG I + +
Sbjct: 179 IAVASTDQNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPTST------------- 217
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
YA SGTSM+ PH AG+A LL + S++ IR+A+ TAD +
Sbjct: 218 -YASLSGTSMATPHVAGVAGLLASQG--RSASNIRAAIENTADKIS-------------- 260
Query: 600 GTPLDFGAGHINPNKAMD 617
GT + G +N KA+
Sbjct: 261 GTGTYWAKGRVNAYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 43/218 (19%), Positives = 70/218 (32%), Gaps = 57/218 (26%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
GS + ++D+GV P + G +F
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAGKVVG------------GWDF------------------ 58
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
+ +P++ GHGTH + A N G A G AP A I
Sbjct: 59 ----------VDNDSTPQNGNGHGTHCAGIAAAVT---NNSTGIA-----GTAPKASILA 100
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE--TTFDENPIAIGAFAALKK 311
++ +++ V G+ A G V+SLSLG + + A+ A K
Sbjct: 101 VRVL--DNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ---AVN--YAWNK 153
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFA 349
G V +AGN+G + V + + +
Sbjct: 154 GSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKS 191
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 29/209 (13%), Positives = 55/209 (26%), Gaps = 51/209 (24%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
+ V+V V+DSGV + + +
Sbjct: 37 MSLTDKNTPVVVSVVDSGV---------AFIGGL-------------------SDSEFAK 68
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
SF + + F + HGT +S IA G GV P
Sbjct: 69 FSFTQD--------GSPFPVKKSEALYIHGTAMASLIASRY-------GIY-----GVYP 108
Query: 248 MARIAMYKI--AFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGA 305
A I+ ++ D+ A++ + ++++S G + +
Sbjct: 109 HALISSRRVIPDGVQDSW-IRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLS 167
Query: 306 FAALKKGIFVACSAGNSGPRPYSIENGAP 334
+ + GN G +
Sbjct: 168 RMGRNNDRLIVAAVGNDGADIRKLSAQQR 196
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 34/128 (26%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
S G + DI APG +I + SGTS
Sbjct: 235 GGITGSRFGNN-------WVDIAAPGQNITFLRPDAK--------------TGTGSGTSE 273
Query: 550 SCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGH 609
+ +G+ + + + ++ ++ ++ +AD +
Sbjct: 274 ATAIVSGVLAAMTSCNPRATATELKRTLLESADKYP-------------SLVDKVTEGRV 320
Query: 610 INPNKAMD 617
+N KA+
Sbjct: 321 LNAEKAIS 328
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 7e-15
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 49/151 (32%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + + +A FS+R P ++ APGVDIL + +
Sbjct: 202 IAVGAIDSNDNIASFSNRQP----------EVSAPGVDILSTYPDDS------------- 238
Query: 540 EYALESGTSMSCPHAAGIATLLKATHH-------------EWSSAAIRSAMMTTADVLDN 586
Y GT+M+ PH +G+ L++A ++ + S +R + TAD L
Sbjct: 239 -YETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDL-- 295
Query: 587 AYDMIADISTGVAGTPLDFGAGHINPNKAMD 617
G G D+G G + A+
Sbjct: 296 ----------GPTGWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 48/240 (20%), Positives = 74/240 (30%), Gaps = 73/240 (30%)
Query: 132 GFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFN 191
G S + V V+D+GV + P + + + +
Sbjct: 26 GSVSVIQVAVLDTGVDYDHPDLAANI-------AWCVSTLRGKVST-------------- 64
Query: 192 KGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARI 251
D GHGTH TIA N G GVAP +I
Sbjct: 65 --------------KLRDCADQNGHGTHVIGTIAAL----NNDIGVV-----GVAPGVQI 101
Query: 252 AMYKIAFYNDTLKAAAVDVLAGMDQAIAD--------------------GVDVMSLSLGF 291
++ + + D+ G++QAI +V+S+SLG
Sbjct: 102 YSVRVL--DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG 159
Query: 292 PE--TTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFA 349
P + + I A GI + ++GN G S P + VGA + A
Sbjct: 160 PADDSYLYD---MII--QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIA 214
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 61/319 (19%), Positives = 96/319 (30%), Gaps = 92/319 (28%)
Query: 69 THLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHLHTTHTPKFVGLKKHAGL- 127
+Y + + + + L+KMPG +E P ++G
Sbjct: 25 HIVYQFKLI-PAVVVDVPANAVGKLKKMPG--VEKVEFDHQAVLLGKPSWLGGGSTQPAQ 81
Query: 128 ---W-------PAA-----GFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVG 172
W P+ G S + V V+D+GV + P
Sbjct: 82 TIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA----------------- 124
Query: 173 VEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNA 232
+ S +G + D GHGTH TIA
Sbjct: 125 ----------NIAWCVSTLRG--------KVSTKLRDCADQNGHGTHVIGTIAALN---- 162
Query: 233 NYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD------------ 280
N G GVAP +I ++ + + D+ G++QAI
Sbjct: 163 NDIGVV-----GVAPGVQIYSVRVL--DARGSGSYSDIAIGIEQAILGPDGVADKDGDGI 215
Query: 281 --------GVDVMSLSLGFPE--TTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIE 330
+V+S+SLG P + + I A GI + ++GN G S
Sbjct: 216 IAGDPDDDAAEVISMSLGGPADDSYLYD---MII--QAYNAGIVIVAASGNEGAPSPSYP 270
Query: 331 NGAPWITTVGAGTVDREFA 349
P + VGA + A
Sbjct: 271 AAYPEVIAVGAIDSNDNIA 289
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 49/151 (32%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + + +A FS+R P ++ APGVDIL + +
Sbjct: 277 IAVGAIDSNDNIASFSNRQP----------EVSAPGVDILSTYPDDS------------- 313
Query: 540 EYALESGTSMSCPHAAGIATLLKATHH-------------EWSSAAIRSAMMTTADVLDN 586
Y GT+M+ PH +G+ L++A ++ + S +R + TAD L
Sbjct: 314 -YETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDL-- 370
Query: 587 AYDMIADISTGVAGTPLDFGAGHINPNKAMD 617
G G D+G G + A+
Sbjct: 371 ----------GPTGWDADYGYGVVRAALAVQ 391
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 31/123 (25%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
+T+ T S + FS+ G + D+ APG I AW + TI
Sbjct: 174 VTVGSTTSSDSRSSFSNWGSCV--------DLFAPGSQIKSAW-YDGGYKTI-------- 216
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
SGTSM+ PH AG+A L ++ + + + + A + +
Sbjct: 217 -----SGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRA---------SENKVSDTR 262
Query: 600 GTP 602
GT
Sbjct: 263 GTT 265
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 33/157 (21%)
Query: 201 ISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYN 260
+ D GHGTH + TI GS+ GVA I ++ +
Sbjct: 55 YDFVDNDADSSDCNGHGTHVAGTIGGSQY--------------GVAKNVNIVGVRV--LS 98
Query: 261 DTLKAAAVDVLAGMDQAIADGV--DVMSLSLGFPE-TTFDENPIAIGAFAALKKGIFVAC 317
+ V++G+D + V ++SLG + T D A+ A++ G+
Sbjct: 99 CSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDS---AVQ--GAIQSGVSFML 153
Query: 318 SAGNSGPR-----PYSIENGAPWITTVGAGTVDREFA 349
+AGNS P P TVG+ T +
Sbjct: 154 AAGNSNADACNTSPAR----VPSGVTVGSTTSSDSRS 186
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 26/203 (12%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
W G +V+V V+D+G+ + G + + + +
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-HRDLNANV-------LPGYDFISNSQISLDGDGRDADP 76
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
+ + D HG+H + TIA N G A GVA
Sbjct: 77 FDEGDWFDNWACGGRPDPRKE-RSDSSWHGSHVAGTIAAV---TNNRIGVA-----GVAY 127
Query: 248 MARIAMYKI-----AFYNDTLKAA--AVDVLAGMDQAIADGVDVMSLSLGFPETTFDENP 300
A++ + + +D A + V+++SLG
Sbjct: 128 GAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQ 187
Query: 301 IAIGAFAALKKGIFVACSAGNSG 323
I A + G V +AGN
Sbjct: 188 TMID--RATRLGALVVVAAGNEN 208
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 32/132 (24%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
A FS+ G + D+ APG DIL + Y+ +GTSM
Sbjct: 233 IRASFSNYGVDV--------DLAAPGQDILSTVDSGTR-------RPVSDAYSFMAGTSM 277
Query: 550 SCPHAAGIATLLKA----THHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDF 605
+ PH +G+A L+ + + + A ++ +++T + D
Sbjct: 278 ATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLD-------------RAL 324
Query: 606 GAGHINPNKAMD 617
G+G ++ A++
Sbjct: 325 GSGIVDAEAAVN 336
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
+T+ T S A FS+ G + D+ APG I AW + T
Sbjct: 174 LTVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAWYTSD------------T 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581
+GTSM+ PH AG+A L + + A++ SA++ A
Sbjct: 214 ATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 7e-12
Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 33/155 (21%)
Query: 203 TTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDT 262
+ +D GHGTH + TI G GVA + ++ +
Sbjct: 57 YDALGGNGQDCNGHGTHVAGTIGGVTY--------------GVAKAVNLYAVRV--LDCN 100
Query: 263 LKAAAVDVLAGMDQAIADGVD--VMSLSLGFPE-TTFDENPIAIGAFAALKKGIFVACSA 319
+ V+AG+D + V ++SLG T D A+ ++ G+ A +A
Sbjct: 101 GSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDN---AVK--NSIAAGVVYAVAA 155
Query: 320 GNSGPR-----PYSIENGAPWITTVGAGTVDREFA 349
GN P TVGA T A
Sbjct: 156 GNDNANACNYSPAR----VAEALTVGATTSSDARA 186
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 20/102 (19%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
IT+ T + + FS+ G L DI APG I +W + +
Sbjct: 176 ITVGSTTSNDSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN------------S 215
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581
SGTSM+ PH AG+A L + S A + + + T A
Sbjct: 216 ATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 31/151 (20%)
Query: 206 DYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKA 265
+ D GHGTH + TI GS GVA + ++ N +
Sbjct: 62 NDYDATDCNGHGTHVAGTIGGSTY--------------GVAKNVNVVGVRV--LNCSGSG 105
Query: 266 AAVDVLAGMDQAIADGV--DVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
+ V+AG++ + V ++SLG + ++ + AA+ GI +AGN
Sbjct: 106 SNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAAGNDN 161
Query: 324 PR-----PYSIENGAPWITTVGAGTVDREFA 349
P A TVG+ T + +
Sbjct: 162 SNACNYSPAR----AADAITVGSTTSNDSRS 188
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS 569
D+ APG DI+GA T + +SGTS + H AGIA ++ + E +
Sbjct: 208 DLFAPGEDIIGASSDCS------------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELT 255
Query: 570 SAAIRSAMMTTA--DVLDNAYDMIADISTGVAGTP 602
A +R ++ + DV++ A+ TP
Sbjct: 256 LAELRQRLIHFSAKDVINEAWFP----EDQRVLTP 286
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 35/157 (22%)
Query: 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTL 263
T + HGTH + ++G GVA A + ++ N
Sbjct: 62 TRFHRQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRV--LNCQG 105
Query: 264 KAAAVDVLAGMDQAIAD------GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVAC 317
K L G++ G V+ L L + + G+ +
Sbjct: 106 KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVT 161
Query: 318 SAGNSGPR-----PYSIENGAPWITTVGAGTVDREFA 349
+AGN P S AP + TVGA +
Sbjct: 162 AAGNFRDDACLYSPAS----APEVITVGATNAQDQPV 194
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 36/154 (23%)
Query: 208 DSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAA 267
+ RD GHGTH + TI GVA I K+ +D+ +
Sbjct: 62 STARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGVKV--LDDSGSGSL 105
Query: 268 VDVLAGMDQAIADGVD-------VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAG 320
+++AGMD +D V S+SLG + A G+FVA +AG
Sbjct: 106 SNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVAVAAG 161
Query: 321 NSGP-----RPYSIENGAPWITTVGAGTVDREFA 349
N P S P + TVGA + +
Sbjct: 162 NDNRDAANTSPAS----EPTVCTVGATDSNDVRS 191
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
T+ T + + FS+ G + DI APG I W TI
Sbjct: 179 CTVGATDSNDVRSTFSNYGRVV--------DIFAPGTSITSTW-IGGRTNTI-------- 221
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581
SGTSM+ PH AG+A L S+ A+ + T +
Sbjct: 222 -----SGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 40/156 (25%), Positives = 58/156 (37%), Gaps = 38/156 (24%)
Query: 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAA 266
Y S RD GHGTH + T+ GVA ++ K+ +D
Sbjct: 60 YYSSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGVKV--LDDNGSGQ 103
Query: 267 AVDVLAGMDQAIADGVD-------VMSLSLGFPE-TTFDENPIAIGAFAALKKGIFVACS 318
++AGMD +D + V SLSLG ++ + A G+ VA +
Sbjct: 104 YSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNS---AAA--RLQSSGVMVAVA 158
Query: 319 AGNSGPR-----PYSIENGAPWITTVGAGTVDREFA 349
AGN+ P S P + TVGA +
Sbjct: 159 AGNNNADARNYSPAS----EPSVCTVGASDRYDRRS 190
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 23/102 (22%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
T+ + + + FS+ G L DI PG DIL W+
Sbjct: 178 CTVGASDRYDRRSSFSNYGSVL--------DIFGPGTDILSTWIGGS------------- 216
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581
SGTSM+ PH AG+A L + ++A+ + TA
Sbjct: 217 -TRSISGTSMATPHVAGLAAYLMT-LGKTTAASACRYIADTA 256
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 6e-07
Identities = 44/239 (18%), Positives = 73/239 (30%), Gaps = 27/239 (11%)
Query: 468 NADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRP 527
N D T SI + ITI +S ++ G I + +
Sbjct: 210 NYDGYTNSI-YSITIGAIDHKDLHPPYSEGCSAVM----AVTYSSGSGEYIHSSDING-- 262
Query: 528 IATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNA 587
GTS + P AAG+ TLL + + ++ + +A L+
Sbjct: 263 -----------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN 311
Query: 588 YDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLT 647
D S +G G I+ +K ++ ++ V + Y SQ
Sbjct: 312 ADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWE-NVNAQTWFYLPTLYVSQSTNSTE 370
Query: 648 GTSNFTCEHGNLDLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTV 706
T L +F I + T T + R T + +PAG+
Sbjct: 371 ETLESVITISEKSLQDANFKRIEHVTVTVDIDTEI--------RGTTTVDLISPAGIIS 421
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 45/237 (18%), Positives = 70/237 (29%), Gaps = 61/237 (25%)
Query: 126 GLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLI 185
LW G+ V+ ++D G+ E+ KD+
Sbjct: 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAE------------------------- 79
Query: 186 GARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGV 245
G+ FN T HGT + IA + N+ G +GV
Sbjct: 80 GSWDFN----------DNTNLPKPRLSDDYHGTRCAGEIAA--KKGNNFCG------VGV 121
Query: 246 APMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGA 305
A+I+ +I + T D A + D D+ S S G + +
Sbjct: 122 GYNAKISGIRILSGDITT----EDEAASLIYG-LDVNDIYSCSWGPADDGRHLQGPSDLV 176
Query: 306 FAALK---------KGIFVACSAGNSGPR----PYSIENGAPWITTVGAGTVDREFA 349
AL KG ++GN G R Y + + T+GA
Sbjct: 177 KKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHP 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 6e-07
Identities = 57/390 (14%), Positives = 115/390 (29%), Gaps = 117/390 (30%)
Query: 443 FPGDFDMPFV-----TVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKF--- 494
F +FD V ++ L+ E+ +II + +A L +K V KF
Sbjct: 29 FVDNFDCKDVQDMPKSI-LSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 495 ---------------SSRGPSL-RSPWILKPDILAPGVDILGAWVPNR--PIATIRDIGK 536
R PS+ +I + D L + + +R P +R +
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---Q 142
Query: 537 LLTEYALESGTS-----MSCPHAAGIA-TLLKATHHEWSSAAIRSAMMTTADVLDNAYDM 590
L E L + + G T + DV + Y +
Sbjct: 143 ALLE--LRPAKNVLIDGV-----LGSGKTWV------------------ALDVCLS-YKV 176
Query: 591 IADISTGVAGTPLDFGAGHINPNKAMDP--GLVYDIEVQDYINYLCALNYTSQQIRVLTG 648
+ + L+ + P ++ L+Y I+ + + S I++
Sbjct: 177 QCKMDFKIFW--LNLKNCNS-PETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIH 228
Query: 649 T-----SNFTCEHGNLDLNYPSFIIILNNTNTA----SFTFK-RVLTNVAVTR--SVYTA 696
+ Y + +++L N A +F ++L TR V T
Sbjct: 229 SIQAELRRLLKSK-----PYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQV-TD 279
Query: 697 VVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGN------DVSP---------KRN 741
+ A +++ +++ K+ ++ + +P R+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 742 YLGNFGYLTWFEVNGKHQVRSPIVSAFSVS 771
L + W KH + + S
Sbjct: 340 GLATWDN--W-----KHVNCDKLTTIIESS 362
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 102/717 (14%), Positives = 185/717 (25%), Gaps = 263/717 (36%)
Query: 49 HHHWYMSTLSSLSSPDGDAPTHLYTY-----------------NHVVDGFSAVLSQTHLK 91
HHH +M D + H Y Y V D ++LS+ +
Sbjct: 2 HHHHHM---------DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID 52
Query: 92 NLQKMPGH-HGTYLETFGHLHTTHT---PKFVG--LKKHAGLWPAAGFGSDVIVGVIDSG 145
++ GT F L + KFV L+ + + + ++
Sbjct: 53 HIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTE--------- 101
Query: 146 VWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNR---------KLIGARSFNKGLKQ 196
PS + +R R F + +R L+ R K +
Sbjct: 102 --QRQPSMMTRMY--IEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLI 155
Query: 197 YGLKISTTFDYDSPRDFFGHG--THTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMY 254
G+ G G +VQ F ++
Sbjct: 156 DGVL--------------GSGKTWVALDVCLSYKVQCKMDFK----------------IF 185
Query: 255 KIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIF 314
+ N + VL M Q + +D S + + I + A + +
Sbjct: 186 WLNLKNCN---SPETVLE-MLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLL 238
Query: 315 VACSAGNSGPRPYS--------IENGAPW----------ITTVGAGTVDREFAARVT--- 353
+ +PY ++N W +TT D AA T
Sbjct: 239 KS--------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 354 -------LGNEE-LSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYI 405
L +E S++ K + + P +E+ N PR ++ I
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYL---DCRPQDLP---------REVLTTN---PRRLS---I 332
Query: 406 FCAFDYKGNITVSQ----QLEEVRRTRAAG--AIISADSRQN-----LFPGD-------- 446
G T +++ + + A+ R+ +FP
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 447 ----FDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLR 502
FD+ V + +L K ++ + I+I
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPK----ESTISI-------------------- 428
Query: 503 SPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESG---TSMSCPHAAG--- 556
P I +++ V + ++ Y + + P+
Sbjct: 429 ------PSIY---LELK---VKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 557 --IAT-LLKATHHE-------------WSSAAIR---SAMMTTADVLDNAYDMIADISTG 597
I L H E + IR +A + +L+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-------- 526
Query: 598 VAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTC 654
L F +I N DP Y+ V +++L I S +T
Sbjct: 527 -----LKFYKPYICDN---DP--KYERLVNAILDFL--PKIEENLIC-----SKYTD 566
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 7e-07
Identities = 33/247 (13%), Positives = 60/247 (24%), Gaps = 58/247 (23%)
Query: 126 GLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLI 185
W G ++V ++D G+ P
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAG---------------------------NYD 61
Query: 186 GARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGV 245
SF+ + + + HGT + +A N GV
Sbjct: 62 PGASFD-----VNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVA---NNGVCGV-----GV 108
Query: 246 APMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGA 305
A ARI ++ T A + + + + S S G + + A A
Sbjct: 109 AYNARIGGVRMLDGEVTDAVEARSLGLNP-----NHIHIYSASWGPEDDGKTVDGPARLA 163
Query: 306 FAALK---------KGIFVACSAGNSGPR----PYSIENGAPWITTVGAGTVDREFAARV 352
A G ++GN G + + ++ + T
Sbjct: 164 EEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYS 223
Query: 353 TLGNEEL 359
+ L
Sbjct: 224 EACSSTL 230
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 8e-06
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 541 YALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG 600
+GTS S P AAGI L + + ++ ++ T+ D A G
Sbjct: 254 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 313
Query: 601 TPLDFGAGHINPNKAMD 617
+ +G G ++ +
Sbjct: 314 SH-SYGYGLLDAGAMVA 329
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 33 YIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKN 92
Y+V + + + L + ++ G L+ ++ ++ GF +S L+
Sbjct: 50 YVVVLKEETHLSQSERT----ARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLEL 105
Query: 93 LQKMPG 98
K+P
Sbjct: 106 ALKLPH 111
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 33 YIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKN 92
Y+V + + + L + ++ G L+ ++ ++ GF +S L+
Sbjct: 40 YVVVLKEETHLSQSERT----ARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLEL 95
Query: 93 LQKMPG 98
K+P
Sbjct: 96 ALKLPH 101
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 774 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 99.01 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.93 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.88 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.77 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.59 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.48 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.47 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 95.7 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.08 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 94.36 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 93.87 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 93.84 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.18 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 87.57 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 86.86 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 86.36 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 85.31 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-125 Score=1095.06 Aligned_cols=636 Identities=46% Similarity=0.748 Sum_probs=576.3
Q ss_pred cCCCCCcccccccCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeecc
Q 046220 112 TTHTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFN 191 (774)
Q Consensus 112 ~~~s~~~~g~~~~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~ 191 (774)
++++|+|+|+.+..++|..+.+|+||+|||||||||++||+|.+.+++++|.+|+|.|+.|.+|+...||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 57899999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHH
Q 046220 192 KGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271 (774)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~ 271 (774)
++++... .+...+..+++|.+||||||||||||+.+++.+.+|++.|.+.||||+|+|++||+|+..+ +..++++
T Consensus 81 ~~~~~~~--~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~ 155 (649)
T 3i6s_A 81 KGILAND--PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG---TFTSDLI 155 (649)
T ss_dssp HHHHHHC--TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTE---ECHHHHH
T ss_pred Ccccccc--cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCC---CCHHHHH
Confidence 8765433 2334455678999999999999999999999999999999999999999999999999888 8999999
Q ss_pred HHHHHHHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEE
Q 046220 272 AGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAAR 351 (774)
Q Consensus 272 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~ 351 (774)
+||+||+++|+||||||||....++..+++.+++++|.++|++||+||||+|+...++++.+||+|+|||++.||.|+..
T Consensus 156 ~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~ 235 (649)
T 3i6s_A 156 AAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235 (649)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEE
T ss_pred HHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeE
Confidence 99999999999999999998777778899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCc--ccEEEEEEEeCCCCchhHHHHHHHHhcCc
Q 046220 352 VTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAV--AGKYIFCAFDYKGNITVSQQLEEVRRTRA 429 (774)
Q Consensus 352 ~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~--~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga 429 (774)
+.+++++. +.|.++|+.......+|++|.. ....|.+..+++..+ +|||++| .|+.+.+.+ |..+++++|+
T Consensus 236 ~~lgng~~-~~g~sl~~~~~~~~~~plv~~~---~~~~C~~~~l~~~~vdl~GkIvlc--~~g~~~~~~-k~~~~~~~Ga 308 (649)
T 3i6s_A 236 LTLGNGLK-IRGWSLFPARAFVRDSPVIYNK---TLSDCSSEELLSQVENPENTIVIC--DDNGDFSDQ-MRIITRARLK 308 (649)
T ss_dssp EEETTSCE-EEEECCCSSCBCEEEEEEECCT---TTTTCCCHHHHTTSSSGGGCEEEE--CCCSCHHHH-HHHHHHHTCS
T ss_pred EEeCCCcE-EeeeecccCcccCcceeeEecc---cccccccccccccccccCCcEEEE--eCCCccHHH-HHHHHHhcCc
Confidence 99999999 9999999833346789999976 567899888888877 9999999 999999998 9999999999
Q ss_pred eEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccC
Q 046220 430 AGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKP 509 (774)
Q Consensus 430 ~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 509 (774)
.|+|++|+. .....+.+.+|+++|+.++|..|++|++++.+++++|.+..+..+..+.+.+++||||||+.+.++++||
T Consensus 309 ~g~i~~n~~-~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKP 387 (649)
T 3i6s_A 309 AAIFISEDP-GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKP 387 (649)
T ss_dssp EEEEECCCG-GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSC
T ss_pred eEEEEecCc-cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCC
Confidence 999999986 4556678899999999999999999999999999999999999998899999999999999998999999
Q ss_pred eeEeCCCceEeecCCCCCCccccCCc-cccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccccccc
Q 046220 510 DILAPGVDILGAWVPNRPIATIRDIG-KLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588 (774)
Q Consensus 510 DI~APG~~I~sa~~~~~~~~~~~~~~-~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g 588 (774)
||+|||++|+++|+..........+. +. ..|..+||||||||||||+||||||+||+|+|++||++||+||++++..+
T Consensus 388 DI~APG~~Ilsa~~~~~~~~~~~~d~~~~-~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g 466 (649)
T 3i6s_A 388 DILAPGVLILAAYPPNVFATSIGTNILLS-TDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTR 466 (649)
T ss_dssp CEEEECSSEEEECCTTSCCEEETTTEEEC-CSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTS
T ss_pred eEEeCCCCeEeecCCCCCccccccccccc-cceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCC
Confidence 99999999999999866544444333 33 68999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccCCCcccCCCccCCCCCCCCCeeeeCCchhhhhhhhhcCCCccceEEEecccccc--cCCCCCCCCCCcE
Q 046220 589 DMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFT--CEHGNLDLNYPSF 666 (774)
Q Consensus 589 ~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--c~~~~~~ln~ps~ 666 (774)
.++.+...+.+++++.||+|+||+.+|++||||||++.+||+.|||++||+.++|+.|++ ..++ |+....+||||||
T Consensus 467 ~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~-~~~~~~C~~~~~~lNyPs~ 545 (649)
T 3i6s_A 467 KPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR-SSASHNCSNPSADLNYPSF 545 (649)
T ss_dssp SBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT-TTSCC-CCCCCCCCCCSSE
T ss_pred CcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec-CCCcCCCCCchhhcCCCcE
Confidence 999887667889999999999999999999999999999999999999999999999988 4566 9767789999999
Q ss_pred EEEe-cCCCCce--EEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCc
Q 046220 667 IIIL-NNTNTAS--FTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYL 743 (774)
Q Consensus 667 ~~~~-~~~~~~~--~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~ 743 (774)
++.+ +...... ++|+|||||||+..++|+++++.|+|++|+|+|++|+|++.+|+++|+|||+...... +.
T Consensus 546 ~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~------~~ 619 (649)
T 3i6s_A 546 IALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEG------QS 619 (649)
T ss_dssp EEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---------C
T ss_pred EeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCC------Cc
Confidence 9987 3211012 8999999999998999999999999999999999999998999999999999875333 56
Q ss_pred cEEEEEEEEeeC--CeeEEEEEEEEEEEc
Q 046220 744 GNFGYLTWFEVN--GKHQVRSPIVSAFSV 770 (774)
Q Consensus 744 ~~~G~~~~~~~~--~~~~v~~P~~~~~~~ 770 (774)
+.||+|+| .| |+|.||+||+|++..
T Consensus 620 ~~fg~l~w--~~~~~~h~vrsPi~v~~~~ 646 (649)
T 3i6s_A 620 RNVGSITW--VEQNGNHSVRSPIVTSPII 646 (649)
T ss_dssp CCEEEEEE--EETTSCCEEEEEEEEEECC
T ss_pred eEEEEEEE--EcCCCCeEEEEeEEEEEcc
Confidence 89999999 76 999999999999863
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-112 Score=989.31 Aligned_cols=608 Identities=39% Similarity=0.665 Sum_probs=512.2
Q ss_pred cCCCCCcccccccCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeecc
Q 046220 112 TTHTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFN 191 (774)
Q Consensus 112 ~~~s~~~~g~~~~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~ 191 (774)
++++|+|+||+ ..+|.+..+|+||+|||||||||++||+|.|+++.+++.+|+|.|+.+.+|. ||+|++|+++|.
T Consensus 1 tt~s~~flGl~--~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~---~n~k~ig~~~~~ 75 (621)
T 3vta_A 1 TTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYH 75 (621)
T ss_dssp CCSHHHHTTCC--TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC---CCSSEEEEEECC
T ss_pred CCCChhHcCCC--ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcc---cCcceeeeeecc
Confidence 57899999996 4689999999999999999999999999999999999999999999998874 999999999998
Q ss_pred ccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHH
Q 046220 192 KGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271 (774)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~ 271 (774)
.+.... ..+..+++|++||||||||||||+..++.+.+|++.|.++||||+|+|++||+|++.+ |..++++
T Consensus 76 ~~~~~~------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~di~ 146 (621)
T 3vta_A 76 IGRPIS------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDG---CSDTDIL 146 (621)
T ss_dssp CSSSCC------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTE---ECHHHHH
T ss_pred cCCccC------CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCC---CCHHHHH
Confidence 765432 2344578999999999999999999888888888889999999999999999999988 8999999
Q ss_pred HHHHHHHhCCCcEEEECcCCCC-CCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeE
Q 046220 272 AGMDQAIADGVDVMSLSLGFPE-TTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAA 350 (774)
Q Consensus 272 ~ai~~a~~~gvdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~ 350 (774)
+||++|+++|+||||||||+.. ..+..+++++++++|+++||+||+||||+|+...++++.+||+++|++++.+|.|..
T Consensus 147 ~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~ 226 (621)
T 3vta_A 147 AAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226 (621)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEE
T ss_pred HHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecccccee
Confidence 9999999999999999999865 345678899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCceEEEeeeeecCCCCCCceEeEEEccCCC-------CcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHH
Q 046220 351 RVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNR-------SKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEE 423 (774)
Q Consensus 351 ~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~-------~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~ 423 (774)
.+.++++.. +.+.+++. .....+++++..... ....|.+..+++..++|||++| .++.. . +..+
T Consensus 227 ~~~~~~~~~-~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~--~~~~~---~-~~~~ 297 (621)
T 3vta_A 227 QVQIGNGQS-FQGVSINT--FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC--EASFG---P-HEFF 297 (621)
T ss_dssp EEEETTSCE-EEEBCCCC--SCCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEEC--SSCCC---H-HHHH
T ss_pred eEEeccCce-eeeeeccc--CCCcccccccccccccccccccccccccccccccccccceEEEE--ecCCC---h-hHHh
Confidence 999999988 88777655 224567777765432 3557888999999999999999 76543 3 6677
Q ss_pred HHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCC
Q 046220 424 VRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRS 503 (774)
Q Consensus 424 ~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 503 (774)
.+..|+.++|++++... ..+.+.+|...++..++..++.|+.....+.+.+....+. .....+.++.||||||+...
T Consensus 298 ~~~~Ga~gvi~~~~~~~--~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~~~va~FSSrGP~~~~ 374 (621)
T 3vta_A 298 KSLDGAAGVLMTSNTRD--YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRAT 374 (621)
T ss_dssp HHHTTCSEEEEECSCCS--SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTCCCBCTTSCCCSCTTC
T ss_pred hhhcceeEEEEEecCCC--cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCCCceeeecCCCCCCCC
Confidence 88899999999987322 2456789999999999999999999999888877554443 44678899999999999887
Q ss_pred CCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccc
Q 046220 504 PWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADV 583 (774)
Q Consensus 504 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 583 (774)
++++||||+|||++|+|+|+........ .+. ..|..|||||||||||||+||||||+||+|+|++||++||+||++
T Consensus 375 ~~ilKPDI~APG~~Ilsa~~~~~~~~~~---~~~-~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~ 450 (621)
T 3vta_A 375 KDVIKPDISGPGVEILAAWPSVAPVGGI---RRN-TLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP 450 (621)
T ss_dssp TTSCSCCEEEECSSEEEECCSSSCBTTB---CCC-CSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBC
T ss_pred CCeeccccccCCcceEeecCccccccCc---CCC-CcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCc
Confidence 8999999999999999999875433322 222 689999999999999999999999999999999999999999998
Q ss_pred cccccccccccCCCccCCCcccCCCccCCCCCCCCCeeeeCCchhhhhhhhhcCCCccceEEEecccccccC----CCCC
Q 046220 584 LDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCE----HGNL 659 (774)
Q Consensus 584 ~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~c~----~~~~ 659 (774)
++.. ..+..+++||+|+||+.+|++||||||++.+||+.|||++||+.++++.+++ ....|. ....
T Consensus 451 ~~~~---------~~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 520 (621)
T 3vta_A 451 MNAR---------FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG-DYSACTSGNTGRVW 520 (621)
T ss_dssp CCTT---------TCTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC------------------------------CGG
T ss_pred cccc---------CCCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeec-cccccCCCCcCccc
Confidence 8654 3456788999999999999999999999999999999999999999999988 556676 4567
Q ss_pred CCCCCcEEEEecCCCCceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCC
Q 046220 660 DLNYPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPK 739 (774)
Q Consensus 660 ~ln~ps~~~~~~~~~~~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~ 739 (774)
+||||||++.+......+++|+|||||||....+|+++++.|+|++|+|+|++|+|++.+|+++|+|||+... .
T Consensus 521 ~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~~--~---- 594 (621)
T 3vta_A 521 DLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI--K---- 594 (621)
T ss_dssp GSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEECC--C----
T ss_pred ccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEecC--C----
Confidence 9999999998665455789999999999999999999999999999999999999998999999999998653 3
Q ss_pred CCCccEEEEEEEEeeCCeeEEEEEEEEEEE
Q 046220 740 RNYLGNFGYLTWFEVNGKHQVRSPIVSAFS 769 (774)
Q Consensus 740 ~~~~~~~G~~~~~~~~~~~~v~~P~~~~~~ 769 (774)
+.++||+|+| +||+|.||+||+|+..
T Consensus 595 --~~~~~g~l~w--~d~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 595 --GFVVSASLVW--SDGVHYVRSPITITSL 620 (621)
T ss_dssp --SSEEEEEEEE--ECSSCCCEEEEEEECC
T ss_pred --CceEEEEEEE--EcCCEEEEeCEEEEEe
Confidence 6799999999 9999999999999853
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-81 Score=760.25 Aligned_cols=544 Identities=21% Similarity=0.255 Sum_probs=424.4
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceeccccc----------CcccCCceeeeeeeccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEF----------NASHCNRKLIGARSFNKGL 194 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f----------~~~~~n~ki~g~~~f~~~~ 194 (774)
+.+|.++++|+||+|||||||||++||+|.+ +..|++.|..+..| ...+||+|++++++|.++.
T Consensus 7 ~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~ 80 (926)
T 1xf1_A 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG 80 (926)
T ss_dssp HHHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS
T ss_pred HHHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceeeccccCC
Confidence 5689999999999999999999999999984 35677777654333 1237999999999987642
Q ss_pred cccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHH
Q 046220 195 KQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGM 274 (774)
Q Consensus 195 ~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai 274 (774)
...|..||||||||||||+...+.+. .+.+.||||+|+|++||+|++.+. .+..+++++||
T Consensus 81 --------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~-~~~~~~i~~Ai 141 (926)
T 1xf1_A 81 --------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGL-ADYARNYAQAI 141 (926)
T ss_dssp --------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCH-HHHHHHHHHHH
T ss_pred --------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCC-CCcHHHHHHHH
Confidence 12288999999999999987554321 234689999999999999987652 03457899999
Q ss_pred HHHHhCCCcEEEECcCCCC--CCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-------------C--CccCCCCceE
Q 046220 275 DQAIADGVDVMSLSLGFPE--TTFDENPIAIGAFAALKKGIFVACSAGNSGPRP-------------Y--SIENGAPWIT 337 (774)
Q Consensus 275 ~~a~~~gvdVIn~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-------------~--~~~~~~p~vi 337 (774)
++|+++|+||||||||... ...+.+++..++++|.++||+||+||||+|+.. . ..++.+||+|
T Consensus 142 ~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vi 221 (926)
T 1xf1_A 142 RDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTL 221 (926)
T ss_dssp HHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSE
T ss_pred HHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceE
Confidence 9999999999999999864 234567888899999999999999999999632 2 2334589999
Q ss_pred EecccccCcceeEEEEe-CCceEEEeeeeecC-CCC-CCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCC
Q 046220 338 TVGAGTVDREFAARVTL-GNEELSVIGKSVYP-ENL-FVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGN 414 (774)
Q Consensus 338 tVgA~~~~~~~~~~~~~-~~g~~~~~g~~~~~-~~~-~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~ 414 (774)
+|||++.++.+...+.+ +++.. ..+.+++. ..+ ....+++++.+. .|.+..+ .+++|||++| .|+.|
T Consensus 222 tVgA~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lv~~~~-----g~~~~~~--~~v~Gkivl~--~rg~~ 291 (926)
T 1xf1_A 222 TVASYSPDKQLTETVRVKTADQQ-DKEMPVLSTNRFEPNKAYDYAYANR-----GTKEDDF--KDVKGKIALI--ERGDI 291 (926)
T ss_dssp EEEEEBCSEEEEEEEEEECTTSC-EEEEEEEEESCCCTTCCEEEEECTT-----SCSTTTT--TTCTTSEEEE--ECCSS
T ss_pred EEeccccccccccceEEEcCCCc-ceeeEEEecCCCCCCceEEEEECCC-----CCCccch--hhcCCeEEEE--ECCCC
Confidence 99999999999988887 55543 44445443 333 356899999754 4766555 6899999999 99999
Q ss_pred chhHHHHHHHHhcCceEEEEecC-CCCC--CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEecee--EecccCCC
Q 046220 415 ITVSQQLEEVRRTRAAGAIISAD-SRQN--LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQIT--ILGTKPSP 489 (774)
Q Consensus 415 ~~~~~~~~~~~~~Ga~g~i~~n~-~~~~--~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~--~~~~~~~~ 489 (774)
.+.. |..+++++|+.|+|++|+ .+.. .......+|+.+++.+++..|+. . +.+++.+..+ .......+
T Consensus 292 ~~~~-k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~--~~~ti~~~~~~~~~~~~~~~ 364 (926)
T 1xf1_A 292 DFKD-KIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----N--PQKTITFNATPKVLPTASGT 364 (926)
T ss_dssp CHHH-HHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----C--SSCEEEECSSCEEEECSSCS
T ss_pred CHHH-HHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----C--CceEEEecccceecccCCcc
Confidence 9998 999999999999999998 3221 23456789999999999988773 3 3345555543 35556678
Q ss_pred ccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHH----Hhc
Q 046220 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLK----ATH 565 (774)
Q Consensus 490 ~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~ 565 (774)
.++.||||||+.+ +++||||+|||++|+++++. +.|..+||||||||||||+||||+ +.|
T Consensus 365 ~~a~FSSrGp~~~--~~lKPDI~APG~~I~sa~~~--------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~ 428 (926)
T 1xf1_A 365 KLSRFSSWGLTAD--GNIKPDIAAPGQDILSSVAN--------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQY 428 (926)
T ss_dssp BCCTTSCCCBCTT--SCBSCCEEEECCCEEESSSC--------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSS
T ss_pred eeccccCCCCCCC--CccCceEECCCCCEEeeccC--------------CcceecCccchhHHHHHHHHHHHHHHHhccC
Confidence 9999999999965 89999999999999999986 689999999999999999999996 459
Q ss_pred CCCCHHH----HHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCCCCeeeeCCchhhhhhhhhcCCCcc
Q 046220 566 HEWSSAA----IRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQ 641 (774)
Q Consensus 566 P~~s~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~~~~~~~~~~~l~~~~~~~~ 641 (774)
|+|+|+| ||++||+||+++...+. ...+++++||+|+||+.+|++|.+ |||..++++.
T Consensus 429 P~~sp~~~~~~Iks~L~~TA~~~~~~~~-------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~ 490 (926)
T 1xf1_A 429 PDMTPSERLDLAKKVLMSSATALYDEDE-------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS 490 (926)
T ss_dssp SSSHHHHHHHHHHHHHHHHSBCCEEGGG-------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcccCCC-------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc
Confidence 9999997 99999999998854321 235678899999999999999854 6788776543
Q ss_pred ceEEEecccccccCCCCCCCCCCcEEEEecCCCCceEEEEEEEEecCCC--ceEEEEEEEC--CCCcEEEEecceEEEec
Q 046220 642 QIRVLTGTSNFTCEHGNLDLNYPSFIIILNNTNTASFTFKRVLTNVAVT--RSVYTAVVKA--PAGMTVAVQPVTLSFDE 717 (774)
Q Consensus 642 ~~~~~~~~~~~~c~~~~~~ln~ps~~~~~~~~~~~~~~~~rtv~n~~~~--~~ty~~~~~~--p~g~~v~v~p~~l~~~~ 717 (774)
++ .+... . ...+++|||||+|+. ..+|++++.. |.+..++|+|..|.|..
T Consensus 491 ~i-----------------------~l~~~--~-~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~ 544 (926)
T 1xf1_A 491 KV-----------------------HLNNV--S-DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETS 544 (926)
T ss_dssp CE-----------------------EEEEE--C-SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred ee-----------------------ecccc--C-ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEecc
Confidence 32 22211 1 468899999999985 4678888765 77899999888776654
Q ss_pred C-------CceEEEEEEEEeccCC-CCCC-CCCCccEEEEEEEEeeCCeeE-EEEEEEEEEEc
Q 046220 718 K-------HSKAEFNLTVNINLGN-DVSP-KRNYLGNFGYLTWFEVNGKHQ-VRSPIVSAFSV 770 (774)
Q Consensus 718 ~-------~~~~~~~vt~~~~~~~-~~~~-~~~~~~~~G~~~~~~~~~~~~-v~~P~~~~~~~ 770 (774)
+ ||+++|+|||+..... ...+ -.++.++||+|+|+..++.|. ||+||++...+
T Consensus 545 ~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 545 WQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp CEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred CCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEecC
Confidence 4 9999999999985200 0000 012568999999954477765 99999998643
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=545.17 Aligned_cols=366 Identities=28% Similarity=0.445 Sum_probs=289.7
Q ss_pred CCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhh-----------cCCC
Q 046220 29 DRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNL-----------QKMP 97 (774)
Q Consensus 29 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L-----------~~~p 97 (774)
...+|||+|++... .+...++++.. +.+++++|+ .|+||+++++++++++| +++|
T Consensus 34 ~~~~~iV~~~~~~~-------~~~~~~~~~~~------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 99 (539)
T 3afg_A 34 QEVSTIIMFDNQAD-------KEKAVEILDFL------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLS 99 (539)
T ss_dssp CEEEEEEEESSHHH-------HHHHHHHHHHH------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCT
T ss_pred CceEEEEEECCCCC-------HHHHHHHHHhc------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCC
Confidence 44579999996532 11222333333 358899997 79999999999999999 8999
Q ss_pred CeEEEEeceeeecccCCC--CCcccccccCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceeccccc
Q 046220 98 GHHGTYLETFGHLHTTHT--PKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEF 175 (774)
Q Consensus 98 ~V~~V~~~~~~~~~~~~s--~~~~g~~~~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f 175 (774)
+|++|++++.+++..... ...+....+..+|..+++|+||+|||||||||++||+|.+
T Consensus 100 ~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~-------------------- 159 (539)
T 3afg_A 100 GVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG-------------------- 159 (539)
T ss_dssp TEEEEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT--------------------
T ss_pred CeeEEEecccccccCccccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC--------------------
Confidence 999999999988754321 1112222346789999999999999999999999999974
Q ss_pred CcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEE
Q 046220 176 NASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYK 255 (774)
Q Consensus 176 ~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~k 255 (774)
++++.++|.++. ..+.|++||||||||||||+..+. .|.+.||||+|+|+++|
T Consensus 160 -------~i~~~~d~~~~~-------------~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~k 212 (539)
T 3afg_A 160 -------KVIGWVDFVNGK-------------TTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIK 212 (539)
T ss_dssp -------TEEEEEETTTCC-------------SSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEE
T ss_pred -------CEeeeEECCCCC-------------CCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEE
Confidence 355556665431 246788999999999999985432 23358999999999999
Q ss_pred EEeeCCCCCCchHHHHHHHHHHHhC----CCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC--Cc
Q 046220 256 IAFYNDTLKAAAVDVLAGMDQAIAD----GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY--SI 329 (774)
Q Consensus 256 v~~~~g~~~~~~~di~~ai~~a~~~----gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~ 329 (774)
++++.+. ++.+++++||+||+++ |++|||||||........+.+..++.++.++|++||+||||+|+... ..
T Consensus 213 v~~~~g~--~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~ 290 (539)
T 3afg_A 213 VLNGQGS--GSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGS 290 (539)
T ss_dssp CSCTTSE--EEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCT
T ss_pred eecCCCC--cCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccC
Confidence 9998775 7889999999999986 99999999998765556688899999999999999999999997543 45
Q ss_pred cCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEE
Q 046220 330 ENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAF 409 (774)
Q Consensus 330 ~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~ 409 (774)
++..+++|+|||++
T Consensus 291 Pa~~~~vitVgA~~------------------------------------------------------------------ 304 (539)
T 3afg_A 291 PAAASKVITVGAVD------------------------------------------------------------------ 304 (539)
T ss_dssp TTTCSSSEEEEEEC------------------------------------------------------------------
T ss_pred CccCCceEEEeeec------------------------------------------------------------------
Confidence 67788999999732
Q ss_pred eCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCC
Q 046220 410 DYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSP 489 (774)
Q Consensus 410 ~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 489 (774)
..+
T Consensus 305 -----------------------------------------------------------------------------~~~ 307 (539)
T 3afg_A 305 -----------------------------------------------------------------------------KYD 307 (539)
T ss_dssp -----------------------------------------------------------------------------TTS
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 124
Q ss_pred ccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCC
Q 046220 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS 569 (774)
Q Consensus 490 ~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s 569 (774)
.+++||||||+.+ +++||||+|||++|+++++...... +... ..|..++|||||||||||++|||+|++|+|+
T Consensus 308 ~~a~fSs~Gp~~~--~~~kpdi~APG~~I~s~~~~~~~~~----~~~~-~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s 380 (539)
T 3afg_A 308 VITDFSSRGPTAD--NRLKPEVVAPGNWIIAARASGTSMG----QPIN-DYYTAAPGTAMATPHVAGIAALLLQAHPSWT 380 (539)
T ss_dssp CBCSSSCCCCCTT--CBCCCSEEEECSSEEEECCTTCCCS----EECS-SSEEEECSHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred ccccccCCCCCCC--CCCcccEecCcCCEEeeccCCCCCC----CCCc-ccccccCchHHHHHHHHHHHHHHHHHCCCCC
Confidence 6789999999986 7999999999999999986532111 0001 3699999999999999999999999999999
Q ss_pred HHHHHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCCC
Q 046220 570 SAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDP 618 (774)
Q Consensus 570 ~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~ 618 (774)
+++||++|++||+++...+ .++..||+|+||+.+|++.
T Consensus 381 ~~~vk~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 381 PDKVKTALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp HHHHHHHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTG
T ss_pred HHHHHHHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhh
Confidence 9999999999999874321 2456899999999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-58 Score=511.26 Aligned_cols=342 Identities=27% Similarity=0.425 Sum_probs=276.4
Q ss_pred CCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEeceeee
Q 046220 30 RKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGH 109 (774)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 109 (774)
+.+|||+||++.. .. +++++. +.+++++|. .+++|+++++++++++|+++|+|++|++++.++
T Consensus 2 ~~~~iV~~~~~~~------~~----~~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~ 64 (395)
T 2z2z_A 2 TIRVIVSVDKAKF------NP----HEVLGI------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 64 (395)
T ss_dssp EEEEEEEECTTTC------CH----HHHHHT------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEE
T ss_pred cEEEEEEECCCcc------HH----HHHHHc------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeec
Confidence 4689999998642 11 233333 368999998 599999999999999999999999999999987
Q ss_pred cccCCC-----------CCcccccc--cCCCCcCCCCCCc--cEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccc
Q 046220 110 LHTTHT-----------PKFVGLKK--HAGLWPAAGFGSD--VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVE 174 (774)
Q Consensus 110 ~~~~~s-----------~~~~g~~~--~~~~w~~~~~G~g--VvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~ 174 (774)
++.... ...|++.. .+.+|..+ +|+| |+|||||||||++||+|.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~------------------ 125 (395)
T 2z2z_A 65 LLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------------ 125 (395)
T ss_dssp ECCEECC------CCSCCCCHHHHHTTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG------------------
T ss_pred ccCCCCcccccccCccccCCcchhhcCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc------------------
Confidence 753221 12355443 45689988 9999 99999999999999999742
Q ss_pred cCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEE
Q 046220 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMY 254 (774)
Q Consensus 175 f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~ 254 (774)
+...++|..+... .+..++.|.+||||||||||+|.. ++. | +.||||+|+|+.+
T Consensus 126 ---------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~~---g-----~~GvAp~a~l~~~ 179 (395)
T 2z2z_A 126 ---------IAWCVSTLRGKVS--------TKLRDCADQNGHGTHVIGTIAALN-NDI---G-----VVGVAPGVQIYSV 179 (395)
T ss_dssp ---------EEEEEECGGGCCB--------CCHHHHBCSSSHHHHHHHHHHCCC-SSS---S-----CCCSSTTCEEEEE
T ss_pred ---------cccCccccCCccc--------CCCCCCCCCCCCHHHHHHHHHeec-CCC---c-----eEEECCCCEEEEE
Confidence 3333444432100 000124678999999999999973 221 1 4899999999999
Q ss_pred EEEeeCCCCCCchHHHHHHHHHHHhC--------------------CCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcE
Q 046220 255 KIAFYNDTLKAAAVDVLAGMDQAIAD--------------------GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIF 314 (774)
Q Consensus 255 kv~~~~g~~~~~~~di~~ai~~a~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~ 314 (774)
|++++.+. ++.+++++||+||+++ +++|||||||... ....+..++.++.++|++
T Consensus 180 kv~~~~g~--~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~ 254 (395)
T 2z2z_A 180 RVLDARGS--GSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIV 254 (395)
T ss_dssp ECSCTTSE--EEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCE
T ss_pred EEecCCCC--ccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHHHHHHHHHHHCCCE
Confidence 99988776 7889999999999998 9999999999853 245677788889999999
Q ss_pred EEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCC
Q 046220 315 VACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNS 394 (774)
Q Consensus 315 vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~ 394 (774)
||+||||+|.....+++..|++|+|||++
T Consensus 255 vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~--------------------------------------------------- 283 (395)
T 2z2z_A 255 IVAASGNEGAPSPSYPAAYPEVIAVGAID--------------------------------------------------- 283 (395)
T ss_dssp EEEECCSSCCSSCCBTTTSTTEEEEEEEC---------------------------------------------------
T ss_pred EEEECCCCCCCCCCCccCCCCEEEEEEec---------------------------------------------------
Confidence 99999999988778888899999999832
Q ss_pred CCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEE
Q 046220 395 TDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 395 ~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
T Consensus 284 -------------------------------------------------------------------------------- 283 (395)
T 2z2z_A 284 -------------------------------------------------------------------------------- 283 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHH
Q 046220 475 SIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHA 554 (774)
Q Consensus 475 ~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 554 (774)
..+.+++||++|| +|+|||++|+++++. +.|..++|||||||||
T Consensus 284 ------------~~~~~a~fS~~G~----------~v~APG~~i~s~~~~--------------~~y~~~sGTS~AaP~V 327 (395)
T 2z2z_A 284 ------------SNDNIASFSNRQP----------EVSAPGVDILSTYPD--------------DSYETLMGTAMATPHV 327 (395)
T ss_dssp ------------TTSCBCTTSCSSC----------SEEEECSSEEEEETT--------------TEEEEEESHHHHHHHH
T ss_pred ------------CCCCCCcccCCCC----------CEEeCCCCeeeecCC--------------CceEecCCHHHHHHHH
Confidence 1246789999998 579999999999886 6899999999999999
Q ss_pred HHHHHHHHHhcC-------------CCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCC
Q 046220 555 AGIATLLKATHH-------------EWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 555 AG~aALl~~~~P-------------~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
||++|||+|++| .|++.+||++|++||+++.. +..+..||||+||+.+|++
T Consensus 328 aG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~------------~g~~~~~G~G~vd~~~A~~ 391 (395)
T 2z2z_A 328 SGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGP------------TGWDADYGYGVVRAALAVQ 391 (395)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSS------------SSSBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCC------------CCCCCCccCceeCHHHHHH
Confidence 999999999999 99999999999999998742 2335689999999999886
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-56 Score=506.10 Aligned_cols=356 Identities=20% Similarity=0.246 Sum_probs=274.3
Q ss_pred CCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhhcC-CCCeEEEEecee
Q 046220 29 DRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQK-MPGHHGTYLETF 107 (774)
Q Consensus 29 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~-~p~V~~V~~~~~ 107 (774)
.++.|||++++.. .+.+++++. +.++++.|. .+++|+++++++++++|++ +|+|++|++++.
T Consensus 43 ~~~~yiv~~~~~~----------~~~~~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~ 105 (471)
T 3t41_A 43 EELYYSVEYKNTA----------TFNKLVKKK------SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCS 105 (471)
T ss_dssp CCEEEEEEESCHH----------HHHHHHHHH------TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCS
T ss_pred CceEEEEEcCCHH----------HHHHHHHhC------CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecce
Confidence 3457999777432 233344433 357888886 5999999999999999999 999999999998
Q ss_pred eecccCCCC----------Cccccccc---CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccc
Q 046220 108 GHLHTTHTP----------KFVGLKKH---AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVE 174 (774)
Q Consensus 108 ~~~~~~~s~----------~~~g~~~~---~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~ 174 (774)
+++...... ..|++... ..+|..+.+|+||+|||||||||++||+|.++. |.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~~----- 173 (471)
T 3t41_A 106 TCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDSK----- 173 (471)
T ss_dssp SCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTCE-----
T ss_pred eccccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccCCc-----
Confidence 877543221 23444432 358999999999999999999999999998641 11100
Q ss_pred cCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEE
Q 046220 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMY 254 (774)
Q Consensus 175 f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~ 254 (774)
.++....|.... .+...+...+.|..||||||||||+|++. +.||||+|+|+.+
T Consensus 174 --------~~~~~~~~~~~~------~~~~~~~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~ 227 (471)
T 3t41_A 174 --------NLVPLNGFRGTE------PEETGDVHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKFTMY 227 (471)
T ss_dssp --------ECCCTTCGGGCC------TTCCCCTTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEE
T ss_pred --------ccccCCCccCCC------cccCCCCCCCcCCCCccchhhheeecCCc------------eeEECCCCeEEEE
Confidence 111111121111 01112233567899999999999998632 4899999999999
Q ss_pred EEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCC-C------------CCCcHHHHHHHHHHcCCcEEEEccCC
Q 046220 255 KIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPET-T------------FDENPIAIGAFAALKKGIFVACSAGN 321 (774)
Q Consensus 255 kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~-~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN 321 (774)
|++++.. +..+++++||+||+++|++|||||||.... . ...+.+..++..+.++|++||+||||
T Consensus 228 kv~~~~~---~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN 304 (471)
T 3t41_A 228 RVFGSKK---TELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGN 304 (471)
T ss_dssp ECCSSSC---CCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred EeccCCC---CcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 9998755 889999999999999999999999997321 0 11245777888888999999999999
Q ss_pred CCCCCC------------------CccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccC
Q 046220 322 SGPRPY------------------SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYG 383 (774)
Q Consensus 322 ~G~~~~------------------~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~ 383 (774)
+|.... ..++.++++|+|||++
T Consensus 305 ~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~---------------------------------------- 344 (471)
T 3t41_A 305 DGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTD---------------------------------------- 344 (471)
T ss_dssp SCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEEC----------------------------------------
T ss_pred CCcCCCcccccccccccccCCceeeccccCCCeEEEEeeC----------------------------------------
Confidence 997643 2566778888888732
Q ss_pred CCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHH
Q 046220 384 NRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVK 463 (774)
Q Consensus 384 ~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~ 463 (774)
T Consensus 345 -------------------------------------------------------------------------------- 344 (471)
T 3t41_A 345 -------------------------------------------------------------------------------- 344 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCc----------------------eEee
Q 046220 464 KYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVD----------------------ILGA 521 (774)
Q Consensus 464 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~----------------------I~sa 521 (774)
..+.+++||++||+. |||+|||++ |+++
T Consensus 345 -----------------------~~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~ 394 (471)
T 3t41_A 345 -----------------------QKSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTT 394 (471)
T ss_dssp -----------------------TTSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEE
T ss_pred -----------------------CCCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEec
Confidence 224678999999964 499999987 8888
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC-CCCHHHHHHHHHccccccccccccccccCCCccC
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH-EWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG 600 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 600 (774)
++. +.|..++|||||||||||++|||+|++| .++|++||++|++||++... .
T Consensus 395 ~~~--------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~-------------~ 447 (471)
T 3t41_A 395 ANN--------------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN-------------K 447 (471)
T ss_dssp CTT--------------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------C
T ss_pred CCC--------------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------C
Confidence 876 6899999999999999999999999999 89999999999999997632 4
Q ss_pred CCcccCCCccCCCCCCCCC
Q 046220 601 TPLDFGAGHINPNKAMDPG 619 (774)
Q Consensus 601 ~~~~~G~G~vn~~~A~~~g 619 (774)
++..||||+||+.+|++..
T Consensus 448 ~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 448 PFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp CHHHHTTCBBCHHHHTTTT
T ss_pred CcCccccChhCHHHHHHHH
Confidence 4568999999999999853
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-58 Score=529.67 Aligned_cols=334 Identities=20% Similarity=0.214 Sum_probs=60.2
Q ss_pred CeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEeceeeec
Q 046220 31 KTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHL 110 (774)
Q Consensus 31 ~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~~~ 110 (774)
++|||+||++........+.+++...+.+... ..++++.|+++|+||+++++++++++|+++|+|++|+|++.++.
T Consensus 76 g~YIV~lk~~~~~~~~~~~~~~l~a~~~~~g~----~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~ 151 (692)
T 2p4e_P 76 GTYVVVLKEETHLSQSERTARRLQAQAARRGY----LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 151 (692)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC----CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHHhhccc----ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccccc
Confidence 48999999887654344444555444433322 36899999999999999999999999999999999999998865
Q ss_pred ccCCCCCccccccc------CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCcee
Q 046220 111 HTTHTPKFVGLKKH------AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKL 184 (774)
Q Consensus 111 ~~~~s~~~~g~~~~------~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki 184 (774)
.. .+ |++... ...|..+.+|+||+|||||||||++||+|.++.. |. +|
T Consensus 152 ~~-~p---WgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~--------- 205 (692)
T 2p4e_P 152 QS-IP---WNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DF--------- 205 (692)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CC-CC---cchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------cc---------
Confidence 21 22 455432 2368888899999999999999999999985410 10 00
Q ss_pred eeeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCC
Q 046220 185 IGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLK 264 (774)
Q Consensus 185 ~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~ 264 (774)
.+..+. ++ ......+.|.+||||||||||+|+. .||||+|+|+++|++++.|.
T Consensus 206 ----~~~~d~---dg----~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~-- 258 (692)
T 2p4e_P 206 ----ENVPEE---DG----TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGK-- 258 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----ccccCC---CC----CcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCC--
Confidence 000000 00 0001246788999999999999873 69999999999999998876
Q ss_pred CchHHHHHHHHHHHhC------CCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC-CccCCCCceE
Q 046220 265 AAAVDVLAGMDQAIAD------GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY-SIENGAPWIT 337 (774)
Q Consensus 265 ~~~~di~~ai~~a~~~------gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vi 337 (774)
++.+++++||+|++++ |++|||||||+.. ...+..++.++.++|++||+||||+|.... ..++..|++|
T Consensus 259 g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vI 334 (692)
T 2p4e_P 259 GTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVI 334 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEE
Confidence 7889999999999986 8999999999753 344556666888999999999999997654 3477889999
Q ss_pred EecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchh
Q 046220 338 TVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITV 417 (774)
Q Consensus 338 tVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~ 417 (774)
+|||++.+..
T Consensus 335 tVGA~d~~~~---------------------------------------------------------------------- 344 (692)
T 2p4e_P 335 TVGATNAQDQ---------------------------------------------------------------------- 344 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCC----------------------------------------------------------------------
Confidence 9998542110
Q ss_pred HHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCC
Q 046220 418 SQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSR 497 (774)
Q Consensus 418 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~ 497 (774)
....-+.||+|
T Consensus 345 ---------------------------------------------------------------------~a~~ss~fSn~ 355 (692)
T 2p4e_P 345 ---------------------------------------------------------------------PVTLGTLGTNF 355 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------ccccccccCCC
Confidence 00001238999
Q ss_pred CCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046220 498 GPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAM 577 (774)
Q Consensus 498 Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L 577 (774)
|| ||||+|||++|+++++... ..|..++|||||||||||++|||++++|+|+|++||++|
T Consensus 356 G~--------~vDI~APG~~I~St~~~~~------------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L 415 (692)
T 2p4e_P 356 GR--------CVDLFAPGEDIIGASSDCS------------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRL 415 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC--------ceeEEecCCcEEeeccCCC------------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 98 4599999999999987632 578999999999999999999999999999999999999
Q ss_pred Hcccccc
Q 046220 578 MTTADVL 584 (774)
Q Consensus 578 ~~TA~~~ 584 (774)
++||.+.
T Consensus 416 ~~tA~~~ 422 (692)
T 2p4e_P 416 IHFSAKD 422 (692)
T ss_dssp -------
T ss_pred HHhcccc
Confidence 9999864
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-55 Score=490.26 Aligned_cols=380 Identities=24% Similarity=0.307 Sum_probs=275.6
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccc
Q 046220 119 VGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196 (774)
Q Consensus 119 ~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~ 196 (774)
|++.. ++.+|+.+ |+||+|||||||||++||+|.++ .+. .++|...
T Consensus 6 W~l~~i~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~--------------------------~~~-~~~~~~~--- 53 (441)
T 1y9z_A 6 WGQTFVGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN--------------------------NVT-GTNNSGT--- 53 (441)
T ss_dssp HHHHHTTCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS--------------------------EEE-ECCCTTS---
T ss_pred CChhhcChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC--------------------------ccc-CcccCCC---
Confidence 44443 45689865 77999999999999999999743 111 1111110
Q ss_pred cCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCc--eEEEEEEEeeCCCCCCchHHHHHHH
Q 046220 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMA--RIAMYKIAFYNDTLKAAAVDVLAGM 274 (774)
Q Consensus 197 ~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~g~~~~~~~di~~ai 274 (774)
.+...+.|..||||||||||+|..++ .| +.||||+| +|+.+|++++.+. ++.+++++||
T Consensus 54 --------~~~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~--~~~~~~~~ai 114 (441)
T 1y9z_A 54 --------GNWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGW--GYSSSLVAAI 114 (441)
T ss_dssp --------CCTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEE--CCSSCHHHHH
T ss_pred --------CCCCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCC--cCHHHHHHHH
Confidence 01124678899999999999997532 12 58999995 9999999998775 7888999999
Q ss_pred HHHHhC-CCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeE---
Q 046220 275 DQAIAD-GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAA--- 350 (774)
Q Consensus 275 ~~a~~~-gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~--- 350 (774)
+||+++ |++|||||||.... ...+..++.++.++|++||+||||+|.....+++..+++|+|||++.+.....
T Consensus 115 ~~a~~~~g~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~ 191 (441)
T 1y9z_A 115 DTCVNSGGANVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQ 191 (441)
T ss_dssp HHHHHTTCCSEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSC
T ss_pred HHHHHhcCCcEEEeCCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCcccc
Confidence 999999 99999999998532 34567778889999999999999999888888999999999999877643211
Q ss_pred ----------------EEEeCCceE---EEeeeeecC-CCCCC-ceEe--EEEccCC------CCcccccCC--CCCCCC
Q 046220 351 ----------------RVTLGNEEL---SVIGKSVYP-ENLFV-SREP--IYFGYGN------RSKEICEGN--STDPRA 399 (774)
Q Consensus 351 ----------------~~~~~~g~~---~~~g~~~~~-~~~~~-~~~~--l~~~~~~------~~~~~c~~~--~~~~~~ 399 (774)
....+++.. .+.|.+++. ..+.. ..++ +.|.... .....|... .++..+
T Consensus 192 ~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~ 271 (441)
T 1y9z_A 192 YTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGN 271 (441)
T ss_dssp CCTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCC
T ss_pred CCCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCC
Confidence 111122211 123333332 11000 0000 1111110 123457543 556789
Q ss_pred cccEEEEEEEeCCCC-----chhHHHHHHHHhcCceEEEEecCC---CCC-----CCCCCCcccEEEEccccHHHHHHHH
Q 046220 400 VAGKYIFCAFDYKGN-----ITVSQQLEEVRRTRAAGAIISADS---RQN-----LFPGDFDMPFVTVNLNNGELVKKYI 466 (774)
Q Consensus 400 ~~g~iv~~~~~~g~~-----~~~~~~~~~~~~~Ga~g~i~~n~~---~~~-----~~~~~~~~p~~~i~~~~g~~l~~~~ 466 (774)
++|||++| +|+.+ .+.. |..+++++|+.|+|++|+. +.. .......+|.+.++.++|..|+.|+
T Consensus 272 ~~gkivl~--~rg~~~~~~~~~~~-~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~ 348 (441)
T 1y9z_A 272 MANKICLV--ERVGNQGSSYPEIN-STKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKL 348 (441)
T ss_dssp CTTEEEEE--ECCSCSSSSCTHHH-HHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTT
T ss_pred ccccEEEE--eccccCcccccHHH-HHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHh
Confidence 99999999 99876 5666 9999999999999999882 211 1233568999999999999998876
Q ss_pred HhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceeccc
Q 046220 467 INADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESG 546 (774)
Q Consensus 467 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sG 546 (774)
.+. + .+ ++... +.|..++|
T Consensus 349 ~~~----~-----------------------------------t~--------~~~~~--------------~~y~~~sG 367 (441)
T 1y9z_A 349 GQS----T-----------------------------------TV--------SNQGN--------------QDYEYYNG 367 (441)
T ss_dssp TSE----E-----------------------------------EE--------EEEEE--------------ESEEEECS
T ss_pred cCC----c-----------------------------------cc--------ccccC--------------CCceeecc
Confidence 321 1 11 11111 68999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCCCCeeeeCCc
Q 046220 547 TSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEV 626 (774)
Q Consensus 547 TSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~~~~~ 626 (774)
||||||||||++|||+|+||+|+|++||++||+||++++..+ .+.+||+|+||+.+|+
T Consensus 368 TSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~---------- 425 (441)
T 1y9z_A 368 TSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAK---------- 425 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHH----------
T ss_pred cccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHH----------
Confidence 999999999999999999999999999999999999875432 3458999999999995
Q ss_pred hhhhhhhhhcCCC
Q 046220 627 QDYINYLCALNYT 639 (774)
Q Consensus 627 ~~~~~~l~~~~~~ 639 (774)
||+.|||+.+++
T Consensus 426 -~~~~~lc~~~~~ 437 (441)
T 1y9z_A 426 -AYLDESCTGPTD 437 (441)
T ss_dssp -HHHHHCTTCC--
T ss_pred -HHHHhhhcCCCC
Confidence 599999999864
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=500.16 Aligned_cols=376 Identities=22% Similarity=0.215 Sum_probs=272.4
Q ss_pred CCCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCH----HHHHhhc--CCCCeEE
Q 046220 28 GDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQ----THLKNLQ--KMPGHHG 101 (774)
Q Consensus 28 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~----~~~~~L~--~~p~V~~ 101 (774)
..+++|||+||+... .+.+++.. +.++.+++. .+++++++++. +.+++|+ ++|+|++
T Consensus 29 ~~~~~~IV~~k~~~~----------~~~~~~~~------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~ 91 (671)
T 1r6v_A 29 YTEGKILVGYNDRSE----------VDKIVKAV------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRY 91 (671)
T ss_dssp BCTTEEEEEESSHHH----------HHHHHHHH------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEE
T ss_pred cCCccEEEEECCCcC----------HHHHHHhc------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceE
Confidence 467999999996421 12222222 246777776 68999999864 3356675 4899999
Q ss_pred EEeceeeecccC----C-----------------------CCCcccccc--cCCC-CcCCCCCCccEEEEEcCCCCCCCC
Q 046220 102 TYLETFGHLHTT----H-----------------------TPKFVGLKK--HAGL-WPAAGFGSDVIVGVIDSGVWPESP 151 (774)
Q Consensus 102 V~~~~~~~~~~~----~-----------------------s~~~~g~~~--~~~~-w~~~~~G~gVvVgVIDtGid~~Hp 151 (774)
|||+..+++... . ....|++.. +..+ |+. .+|+||+|||||||||++||
T Consensus 92 vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~Hp 170 (671)
T 1r6v_A 92 VEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHP 170 (671)
T ss_dssp EECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTTSG
T ss_pred EecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCCCc
Confidence 999987654310 0 012344433 3345 887 88999999999999999999
Q ss_pred CCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCC
Q 046220 152 SFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQN 231 (774)
Q Consensus 152 ~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~ 231 (774)
+|.++- +. +...+.+... ....+..|.+||||||||||||.. ++
T Consensus 171 dL~~~~-------~~-------------------g~~~~~~~~~---------p~~~d~~d~~gHGThVAGiIAa~~-ng 214 (671)
T 1r6v_A 171 DLEGQV-------IA-------------------GYRPAFDEEL---------PAGTDSSYGGSAGTHVAGTIAAKK-DG 214 (671)
T ss_dssp GGTTTB-------CC-------------------EEEGGGTEEE---------CTTCBCCTTCSHHHHHHHHHHCCC-SS
T ss_pred cccccE-------Ee-------------------cccccCCCcC---------CCCCCCccCCCcchhhhhhhhccC-CC
Confidence 998531 10 1111111100 001224567899999999999974 22
Q ss_pred ccccccccceeeeecCCceEEEEEEEeeC----CCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCCCCCcHHHHHHHH
Q 046220 232 ANYFGYAEGTAIGVAPMARIAMYKIAFYN----DTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFA 307 (774)
Q Consensus 232 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~----g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~ 307 (774)
. | +.||||+|+|+++|+++.. +........+++||+||+++|++|||||||... +...+..++..
T Consensus 215 ~---g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~ 283 (671)
T 1r6v_A 215 K---G-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDY 283 (671)
T ss_dssp S---S-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHH
T ss_pred C---c-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHH
Confidence 1 1 4899999999999999861 211134567899999999999999999999853 34677888889
Q ss_pred HHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCC
Q 046220 308 ALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRS 386 (774)
Q Consensus 308 a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 386 (774)
|.++|++||+||||+|... ..+++..|++|+|||++.+.
T Consensus 284 A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g---------------------------------------- 323 (671)
T 1r6v_A 284 AMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG---------------------------------------- 323 (671)
T ss_dssp HHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET----------------------------------------
T ss_pred HHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCC----------------------------------------
Confidence 9999999999999999765 56778889999999843100
Q ss_pred cccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHH
Q 046220 387 KEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYI 466 (774)
Q Consensus 387 ~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 466 (774)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T 1r6v_A 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccc-----cCCccccccc
Q 046220 467 INADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATI-----RDIGKLLTEY 541 (774)
Q Consensus 467 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~-----~~~~~~~~~y 541 (774)
....+++|||+||.. ||+|||++|+++++........ ...... +.|
T Consensus 324 --------------------~~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~-~~y 374 (671)
T 1r6v_A 324 --------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG-GTY 374 (671)
T ss_dssp --------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS-CCE
T ss_pred --------------------CceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCC-Cce
Confidence 001368999999975 9999999999998764211100 000111 579
Q ss_pred eecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCCCCee
Q 046220 542 ALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLV 621 (774)
Q Consensus 542 ~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv 621 (774)
..++|||||||||||++|||+|++|+|++.+||++|++||+++.. +..+..||||+||+.+|++..|.
T Consensus 375 ~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~------------~g~d~~~G~G~vna~~Al~~~l~ 442 (671)
T 1r6v_A 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG------------NGWDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS------------SSCBTTTBTCBCCHHHHHHCCCC
T ss_pred EEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCC------------CCCCCCcccceeCHHHHhhhhcC
Confidence 999999999999999999999999999999999999999998743 23346899999999999998776
Q ss_pred eeCCchhh
Q 046220 622 YDIEVQDY 629 (774)
Q Consensus 622 ~~~~~~~~ 629 (774)
.+....+|
T Consensus 443 ~~~~~~~~ 450 (671)
T 1r6v_A 443 TQGGVEEF 450 (671)
T ss_dssp SSSEEEEE
T ss_pred CCCCccce
Confidence 65544444
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=434.44 Aligned_cols=265 Identities=30% Similarity=0.399 Sum_probs=214.6
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccc
Q 046220 119 VGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196 (774)
Q Consensus 119 ~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~ 196 (774)
|++.. +..+|+.+..|+||+|||||||||++||+|.++ ++..++|.++.
T Consensus 13 w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~~-- 63 (280)
T 1dbi_A 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDND-- 63 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTTB--
T ss_pred CChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCCC--
Confidence 45543 356899988788999999999999999999742 33444554321
Q ss_pred cCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHH
Q 046220 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQ 276 (774)
Q Consensus 197 ~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~ 276 (774)
.++.|..||||||||||+|...++.+ +.||||+|+|+.+|+++..+. ++.+++++||+|
T Consensus 64 -----------~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~kv~~~~g~--~~~~~i~~ai~~ 122 (280)
T 1dbi_A 64 -----------YDPMDLNNHGTHVAGIAAAETNNATG--------IAGMAPNTRILAVRALDRNGS--GTLSDIADAIIY 122 (280)
T ss_dssp -----------SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSSSCEEEEEECCCTTSC--CCHHHHHHHHHH
T ss_pred -----------CCCCCCCCcHHHHHHHHhCcCCCCCc--------ceEeCCCCEEEEEEEECCCCC--cCHHHHHHHHHH
Confidence 23568899999999999998654322 489999999999999988776 788999999999
Q ss_pred HHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCC
Q 046220 277 AIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGN 356 (774)
Q Consensus 277 a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 356 (774)
|+++|++|||||||... ....+..++.++.++|++||+||||+|......++..+++|+|||++
T Consensus 123 a~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~------------- 186 (280)
T 1dbi_A 123 AADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD------------- 186 (280)
T ss_dssp HHHTTCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC-------------
T ss_pred HHHCCCCEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeC-------------
Confidence 99999999999999853 34677888889999999999999999987777788889999999732
Q ss_pred ceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEec
Q 046220 357 EELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISA 436 (774)
Q Consensus 357 g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n 436 (774)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T 1dbi_A 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 046220 437 DSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV 516 (774)
Q Consensus 437 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 516 (774)
..+.++.||++||.+ ||+|||+
T Consensus 187 --------------------------------------------------~~~~~~~~S~~G~~~--------dv~ApG~ 208 (280)
T 1dbi_A 187 --------------------------------------------------QYDRLASFSNYGTWV--------DVVAPGV 208 (280)
T ss_dssp --------------------------------------------------TTSCBCTTBCCSTTC--------CEEEECS
T ss_pred --------------------------------------------------CCCCcCCCCCCCCCc--------eEEEecC
Confidence 124678999999854 9999999
Q ss_pred ceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCC
Q 046220 517 DILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADIST 596 (774)
Q Consensus 517 ~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 596 (774)
+|+++++. +.|..++|||||||||||++|||++ |.+++.+||++|++||+++...
T Consensus 209 ~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~--------- 263 (280)
T 1dbi_A 209 DIVSTITG--------------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT--------- 263 (280)
T ss_dssp SEEEEETT--------------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB---------
T ss_pred CeEeecCC--------------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC---------
Confidence 99999876 6899999999999999999999987 8999999999999999987421
Q ss_pred CccCCCcccCCCccCCCCCCC
Q 046220 597 GVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 597 ~~~~~~~~~G~G~vn~~~A~~ 617 (774)
...||+|+||+.+|++
T Consensus 264 -----~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 264 -----GTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----TTTBSSEECCHHHHHT
T ss_pred -----CCcccCCEECHHHHhc
Confidence 2479999999999876
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-51 Score=428.64 Aligned_cols=262 Identities=32% Similarity=0.486 Sum_probs=220.3
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccc
Q 046220 119 VGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196 (774)
Q Consensus 119 ~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~ 196 (774)
|++.. ++.+|..+++|+||+|+|||||| .+||+|+ +...++|..+
T Consensus 6 W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-----------------------------~~~~~~~~~~--- 52 (269)
T 1gci_A 6 WGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN-----------------------------IRGGASFVPG--- 52 (269)
T ss_dssp HHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-----------------------------EEEEEECSTT---
T ss_pred cChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-----------------------------ccCCcccCCC---
Confidence 45543 35689999999999999999999 8999994 1222334322
Q ss_pred cCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHH
Q 046220 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQ 276 (774)
Q Consensus 197 ~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~ 276 (774)
...+.|..||||||||||+|..+ +. .+.||||+|+|+.+|+++..+. ++.+++++||+|
T Consensus 53 ----------~~~~~d~~gHGT~vAgiia~~~~-~~--------~~~GvAp~a~l~~~~v~~~~g~--~~~~~~~~ai~~ 111 (269)
T 1gci_A 53 ----------EPSTQDGNGHGTHVAGTIAALNN-SI--------GVLGVAPSAELYAVKVLGASGS--GSVSSIAQGLEW 111 (269)
T ss_dssp ----------CCSCSCSSSHHHHHHHHHHCCCS-SS--------BCCCSSTTCEEEEEECBCTTSC--BCHHHHHHHHHH
T ss_pred ----------CCCCCCCCCChHHHHHHHhcCcC-CC--------CcEEeCCCCEEEEEEeECCCCC--cCHHHHHHHHHH
Confidence 12256789999999999999732 11 1489999999999999988775 788899999999
Q ss_pred HHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCC
Q 046220 277 AIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGN 356 (774)
Q Consensus 277 a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 356 (774)
|++++++|||||||... ....+..++.++.++|++||+||||+|.....+++..+++|+|||++
T Consensus 112 a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------- 175 (269)
T 1gci_A 112 AGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD------------- 175 (269)
T ss_dssp HHHTTCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC-------------
T ss_pred HHHCCCeEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeec-------------
Confidence 99999999999999853 24567788888999999999999999988788888899999999732
Q ss_pred ceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEec
Q 046220 357 EELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISA 436 (774)
Q Consensus 357 g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n 436 (774)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T 1gci_A 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 046220 437 DSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV 516 (774)
Q Consensus 437 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 516 (774)
..+.++.||++||.+ ||+|||+
T Consensus 176 --------------------------------------------------~~~~~~~~S~~G~~~--------di~APG~ 197 (269)
T 1gci_A 176 --------------------------------------------------QNNNRASFSQYGAGL--------DIVAPGV 197 (269)
T ss_dssp --------------------------------------------------TTSCBCTTCCCSTTE--------EEEEECS
T ss_pred --------------------------------------------------CCCCCCCCCCCCCCc--------ceEecCC
Confidence 124568899999965 9999999
Q ss_pred ceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCC
Q 046220 517 DILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADIST 596 (774)
Q Consensus 517 ~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 596 (774)
+|+++++. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 198 ~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g----------- 252 (269)
T 1gci_A 198 NVQSTYPG--------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------- 252 (269)
T ss_dssp SEEEEETT--------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS-----------
T ss_pred CeEeecCC--------------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC-----------
Confidence 99999876 68999999999999999999999999999999999999999999873
Q ss_pred CccCCCcccCCCccCCCCCCC
Q 046220 597 GVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 597 ~~~~~~~~~G~G~vn~~~A~~ 617 (774)
.+..||||+||+.+|++
T Consensus 253 ----~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 ----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp ----CHHHHTTCBCCHHHHTC
T ss_pred ----CCCCcccCccCHHHHcC
Confidence 24589999999999875
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-51 Score=431.20 Aligned_cols=263 Identities=29% Similarity=0.453 Sum_probs=217.9
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccc
Q 046220 119 VGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196 (774)
Q Consensus 119 ~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~ 196 (774)
|++.. .+.+|..+++|+||+|||||||||++||+|+ +...++|..+.
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~~-- 54 (274)
T 1r0r_E 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAGE-- 54 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTTC--
T ss_pred CchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-----------------------------CCCCccccCCC--
Confidence 44443 3468999999999999999999999999994 12223343221
Q ss_pred cCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHH
Q 046220 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQ 276 (774)
Q Consensus 197 ~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~ 276 (774)
..+.|..||||||||||+|..+ +. .+.||||+|+|+.+|+++..+. ++.+++++||+|
T Consensus 55 -----------~~~~d~~gHGT~vAgiia~~~~-~~--------g~~GvAp~a~l~~~~v~~~~g~--~~~~~i~~ai~~ 112 (274)
T 1r0r_E 55 -----------AYNTDGNGHGTHVAGTVAALDN-TT--------GVLGVAPSVSLYAVKVLNSSGS--GSYSGIVSGIEW 112 (274)
T ss_dssp -----------CTTCCSSSHHHHHHHHHHCCSS-SS--------BCCCSSTTSEEEEEECSCTTSE--ECHHHHHHHHHH
T ss_pred -----------CCCCCCCCCHHHHHHHHHccCC-CC--------ceEEECCCCEEEEEEEECCCCC--ccHHHHHHHHHH
Confidence 1246789999999999999732 11 1489999999999999987775 778899999999
Q ss_pred HHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC----CCccCCCCceEEecccccCcceeEEE
Q 046220 277 AIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP----YSIENGAPWITTVGAGTVDREFAARV 352 (774)
Q Consensus 277 a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~~~~~~~~~ 352 (774)
|++++++|||||||... ....+..++.++.++|++||+||||+|... ..+++..|++|+|||.+
T Consensus 113 a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~--------- 180 (274)
T 1r0r_E 113 ATTNGMDVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD--------- 180 (274)
T ss_dssp HHHTTCSEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC---------
T ss_pred HHHcCCCEEEeCCCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec---------
Confidence 99999999999999853 246778888899999999999999999763 34567778888888732
Q ss_pred EeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEE
Q 046220 353 TLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432 (774)
Q Consensus 353 ~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~ 432 (774)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T 1r0r_E 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeE
Q 046220 433 IISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDIL 512 (774)
Q Consensus 433 i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 512 (774)
..+.++.||++||. |||+
T Consensus 181 ------------------------------------------------------~~~~~~~~S~~G~~--------~di~ 198 (274)
T 1r0r_E 181 ------------------------------------------------------SNSNRASFSSVGAE--------LEVM 198 (274)
T ss_dssp ------------------------------------------------------TTSCBCTTCCCSTT--------EEEE
T ss_pred ------------------------------------------------------CCCCcCccCCCCCC--------ceEE
Confidence 12457889999985 4999
Q ss_pred eCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccccccccccc
Q 046220 513 APGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIA 592 (774)
Q Consensus 513 APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~ 592 (774)
|||.+|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 199 APG~~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------- 257 (274)
T 1r0r_E 199 APGAGVYSTYPT--------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------- 257 (274)
T ss_dssp EECSSEEEEETT--------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-------
T ss_pred eCCCCeEeecCC--------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC-------
Confidence 999999999876 68999999999999999999999999999999999999999999862
Q ss_pred ccCCCccCCCcccCCCccCCCCCCC
Q 046220 593 DISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 593 ~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
++..||+|+||+.+|++
T Consensus 258 --------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 --------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp --------CHHHHTTCBCCHHHHTC
T ss_pred --------CCCCcccCccCHHHHhC
Confidence 24589999999999975
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-53 Score=460.55 Aligned_cols=309 Identities=22% Similarity=0.249 Sum_probs=197.9
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|+++..|++|+|||||||||++||+|.+..+.+....|...++........ .+..+.. .. ..+...........
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~ 97 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYA-AFQSIRD-QG-LKGKEKEEALEAVI 97 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHH-HHHHHHH-HT-CCSHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCccccc-ccccccC-cc-cccccccccccccc
Confidence 458999998999999999999999999999877666667776655432110000 0000000 00 00000000000000
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCC---CCCchHHHHHHHHHHHhCC
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDT---LKAAAVDVLAGMDQAIADG 281 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~~~di~~ai~~a~~~g 281 (774)
.+..++.|.+||||||||||||+..++ +.||||+|+|+.+|++..... ......+++++|+||+++|
T Consensus 98 ~~~~~~~D~~gHGThVAGiiag~~~~g----------~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g 167 (357)
T 4h6x_A 98 PDTKDRIVLNDHACHVTSTIVGQEHSP----------VFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELG 167 (357)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHCCTTSS----------CCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCCcHHHHHHHHhccCCCC----------ceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcC
Confidence 112234567899999999999975332 589999999999999643210 0145567889999999999
Q ss_pred CcEEEECcCCCC-CCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEE
Q 046220 282 VDVMSLSLGFPE-TTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELS 360 (774)
Q Consensus 282 vdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (774)
++|||||||... .....+.+..++.++.++|++||+||||+|.....+++..|++|+|||++
T Consensus 168 ~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~----------------- 230 (357)
T 4h6x_A 168 ANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK----------------- 230 (357)
T ss_dssp CSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC-----------------
T ss_pred CCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec-----------------
Confidence 999999999764 23445678888889999999999999999988888888889999999732
Q ss_pred EeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC
Q 046220 361 VIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ 440 (774)
Q Consensus 361 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 440 (774)
T Consensus 231 -------------------------------------------------------------------------------- 230 (357)
T 4h6x_A 231 -------------------------------------------------------------------------------- 230 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEe
Q 046220 441 NLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILG 520 (774)
Q Consensus 441 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 520 (774)
..+.+++|||||+.. .||||+|||++|++
T Consensus 231 ----------------------------------------------~~~~~~~fSn~G~~~-----~~~di~APG~~i~s 259 (357)
T 4h6x_A 231 ----------------------------------------------VDGTPCHFSNWGGNN-----TKEGILAPGEEILG 259 (357)
T ss_dssp ----------------------------------------------TTSSBCTTCC---CT-----TTTEEEEECSSEEE
T ss_pred ----------------------------------------------cCCcccccccCCCCC-----CccceeecCCCeEe
Confidence 224678999999753 58999999999999
Q ss_pred ecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHh----cCCCCHHHHHHHHHccccccccccccccccCC
Q 046220 521 AWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKAT----HHEWSSAAIRSAMMTTADVLDNAYDMIADIST 596 (774)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 596 (774)
+++.. +.|..++|||||||||||++|||+++ +|.|+++|||++|++||++++..
T Consensus 260 ~~~~~-------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~--------- 317 (357)
T 4h6x_A 260 AQPCT-------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE--------- 317 (357)
T ss_dssp CCTTC-------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------------
T ss_pred ccCCC-------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC---------
Confidence 98763 46778999999999999999999965 56899999999999999987432
Q ss_pred CccCCCcccCCCccCCCCCCC
Q 046220 597 GVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 597 ~~~~~~~~~G~G~vn~~~A~~ 617 (774)
....+.+||+|+||+.+|++
T Consensus 318 -~~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 318 -VVEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp --------CTTCBCCHHHHHH
T ss_pred -CCCCcccceeEEecHHHHHH
Confidence 22345689999999999987
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-51 Score=429.31 Aligned_cols=265 Identities=32% Similarity=0.480 Sum_probs=218.8
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccc
Q 046220 119 VGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196 (774)
Q Consensus 119 ~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~ 196 (774)
|++.. ...+|..+++|+||+|||||||||++||+|+. ...++|..+.
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~~-- 54 (281)
T 1to2_E 6 YGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPSE-- 54 (281)
T ss_dssp HHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTTC--
T ss_pred cchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCCC--
Confidence 55543 34589999999999999999999999999951 1223333210
Q ss_pred cCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHH
Q 046220 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQ 276 (774)
Q Consensus 197 ~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~ 276 (774)
.....|..||||||||||+|..+ +. .+.||||+|+|+.+|+++.++. +..++++++|+|
T Consensus 55 ----------~~~~~d~~gHGT~vAgiia~~~~-~~--------g~~GvAp~a~l~~~kv~~~~g~--~~~~~i~~ai~~ 113 (281)
T 1to2_E 55 ----------TNPFQDNNSHGTHVAGTVAALNN-SI--------GVLGVAPSASLYAVKVLGADGS--GQYSWIINGIEW 113 (281)
T ss_dssp ----------CCTTCCSSSHHHHHHHHHHCCSS-SS--------SBCCSSTTSEEEEEECSCTTSE--ECHHHHHHHHHH
T ss_pred ----------CCCCCCCCCcHHHHHHHHhccCC-CC--------cceeeCCCCEEEEEEEeCCCCC--ccHHHHHHHHHH
Confidence 11235789999999999999732 11 1489999999999999987775 678899999999
Q ss_pred HHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC----CCccCCCCceEEecccccCcceeEEE
Q 046220 277 AIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP----YSIENGAPWITTVGAGTVDREFAARV 352 (774)
Q Consensus 277 a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~~~~~~~~~ 352 (774)
+++++++|||||||... ....+..++.++.++|++||+||||+|... ..+++..|++|+|||++
T Consensus 114 a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~--------- 181 (281)
T 1to2_E 114 AIANNMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD--------- 181 (281)
T ss_dssp HHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC---------
T ss_pred HHHCCCcEEEECCcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEec---------
Confidence 99999999999999853 246778888899999999999999999763 34567778888888732
Q ss_pred EeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEE
Q 046220 353 TLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432 (774)
Q Consensus 353 ~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~ 432 (774)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T 1to2_E 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeE
Q 046220 433 IISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDIL 512 (774)
Q Consensus 433 i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 512 (774)
..+.++.||++||.+ ||+
T Consensus 182 ------------------------------------------------------~~~~~~~fS~~G~~~--------di~ 199 (281)
T 1to2_E 182 ------------------------------------------------------SSNQRASFSSVGPEL--------DVM 199 (281)
T ss_dssp ------------------------------------------------------TTSCBCTTCCCSTTC--------CEE
T ss_pred ------------------------------------------------------CCCCcCCcCCCCCCc--------eEE
Confidence 124678999999954 999
Q ss_pred eCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccccccccccc
Q 046220 513 APGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIA 592 (774)
Q Consensus 513 APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~ 592 (774)
|||.+|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 200 APG~~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------- 258 (281)
T 1to2_E 200 APGVSIQSTLPG--------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------- 258 (281)
T ss_dssp EECSSEEEEETT--------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-------
T ss_pred ecCCCeEeecCC--------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC-------
Confidence 999999999876 68999999999999999999999999999999999999999999862
Q ss_pred ccCCCccCCCcccCCCccCCCCCCCC
Q 046220 593 DISTGVAGTPLDFGAGHINPNKAMDP 618 (774)
Q Consensus 593 ~~~~~~~~~~~~~G~G~vn~~~A~~~ 618 (774)
+++.||||+||+.+|+++
T Consensus 259 --------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 --------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp --------CHHHHTTCBCCHHHHTSS
T ss_pred --------CCCCcccceecHHHHhhh
Confidence 345899999999999875
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-51 Score=440.80 Aligned_cols=271 Identities=25% Similarity=0.413 Sum_probs=218.8
Q ss_pred cccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeecccccc
Q 046220 118 FVGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLK 195 (774)
Q Consensus 118 ~~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~ 195 (774)
.|++.. +..+|+.+++|+||+|||||||||++||+|.+ ++++.++|..++.
T Consensus 22 ~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~~ 74 (327)
T 2x8j_A 22 PMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTDYG 74 (327)
T ss_dssp CHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSGGG
T ss_pred CcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCCCC
Confidence 355543 35689999999999999999999999999974 2444555654431
Q ss_pred ccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHH
Q 046220 196 QYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMD 275 (774)
Q Consensus 196 ~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~ 275 (774)
. +.....|..||||||||||+|..+ +. .+.||||+|+|+.+|+++..+. ++.+++++||+
T Consensus 75 ~---------~~~~~~d~~gHGT~VAgiia~~~~-~~--------g~~GvAp~a~l~~~kv~~~~g~--~~~~~i~~ai~ 134 (327)
T 2x8j_A 75 G---------DETNFSDNNGHGTHVAGTVAAAET-GS--------GVVGVAPKADLFIIKALSGDGS--GEMGWIAKAIR 134 (327)
T ss_dssp G---------CTTCCCCSSSHHHHHHHHHHCCCC-SS--------BCCCSSTTCEEEEEECSCTTSE--ECHHHHHHHHH
T ss_pred C---------CCCCCCCCCCchHHHHHHHhccCC-CC--------CcEeeCCCCEEEEEEeECCCCC--cCHHHHHHHHH
Confidence 1 112356889999999999999742 21 1489999999999999988775 77889999999
Q ss_pred HHHh------CCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCC-----CCCccCCCCceEEeccccc
Q 046220 276 QAIA------DGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPR-----PYSIENGAPWITTVGAGTV 344 (774)
Q Consensus 276 ~a~~------~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-----~~~~~~~~p~vitVgA~~~ 344 (774)
||++ .+++|||||||... ....+..++.++.++|++||+||||+|.. ...+++..+++|+|||++
T Consensus 135 ~a~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~- 210 (327)
T 2x8j_A 135 YAVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVD- 210 (327)
T ss_dssp HHHHCCCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEEC-
T ss_pred HHHhhcccccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEEC-
Confidence 9999 89999999999853 24667788888999999999999999965 245667788999999732
Q ss_pred CcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHH
Q 046220 345 DREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEV 424 (774)
Q Consensus 345 ~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~ 424 (774)
T Consensus 211 -------------------------------------------------------------------------------- 210 (327)
T 2x8j_A 211 -------------------------------------------------------------------------------- 210 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCC
Q 046220 425 RRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSP 504 (774)
Q Consensus 425 ~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 504 (774)
..+.++.||++||.
T Consensus 211 --------------------------------------------------------------~~~~~~~fS~~G~~---- 224 (327)
T 2x8j_A 211 --------------------------------------------------------------FDLRLSDFTNTNEE---- 224 (327)
T ss_dssp --------------------------------------------------------------TTCCBSCC---CCC----
T ss_pred --------------------------------------------------------------CCCCCCCccCCCCC----
Confidence 12467899999984
Q ss_pred CcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHh-----cCCCCHHHHHHHHHc
Q 046220 505 WILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKAT-----HHEWSSAAIRSAMMT 579 (774)
Q Consensus 505 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~P~~s~~~ik~~L~~ 579 (774)
|||+|||++|+++++. +.|..++|||||||||||++|||+|+ +|.+++.+||++|++
T Consensus 225 ----~di~APG~~i~s~~~~--------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~ 286 (327)
T 2x8j_A 225 ----IDIVAPGVGIKSTYLD--------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVR 286 (327)
T ss_dssp ----CSEEEECSSEEEECST--------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHT
T ss_pred ----ceEecCcCceEeecCC--------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHH
Confidence 4999999999999876 68999999999999999999999999 999999999999999
Q ss_pred cccccccccccccccCCCccCCCcccCCCccCCCCCCC
Q 046220 580 TADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 580 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
||+++. .++..+|+|+||+.+|++
T Consensus 287 tA~~~g--------------~~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 287 RATPIG--------------FTAQAEGNGFLTLDLVER 310 (327)
T ss_dssp TEECCS--------------SCHHHHTTCEECTTHHHH
T ss_pred hCccCC--------------CCCCceeeeEECHHHHHH
Confidence 999863 134689999999999987
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=425.64 Aligned_cols=259 Identities=29% Similarity=0.418 Sum_probs=218.8
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
+..+|+.. +|+||+|||||||||++||+|.+ +++..++|.++.
T Consensus 20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~~--------- 62 (279)
T 1thm_A 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDND--------- 62 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTTB---------
T ss_pred hHHHHhcC-CCCCCEEEEEccCCCCCCcchhc---------------------------CccccccccCCC---------
Confidence 34589886 69999999999999999999974 234445554331
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
..+.|..||||||||||+|...++.+ +.||||+|+|+.+|+++..+. ++.+++++||+||+++|++
T Consensus 63 ----~~~~d~~gHGT~vAgiia~~~~n~~g--------~~GvAp~a~l~~~~v~~~~g~--~~~~~~~~ai~~a~~~g~~ 128 (279)
T 1thm_A 63 ----STPQNGNGHGTHCAGIAAAVTNNSTG--------IAGTAPKASILAVRVLDNSGS--GTWTAVANGITYAADQGAK 128 (279)
T ss_dssp ----SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHTTCS
T ss_pred ----CCCCCCCCcHHHHHHHHhCccCCCCc--------cEEeCCCCEEEEEEeeCCCCC--ccHHHHHHHHHHHHHCCCC
Confidence 23568899999999999998654322 489999999999999988776 7888999999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEee
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g 363 (774)
|||||||... ....+..++.++.++|++||+||||+|.....+++..+++|+|||++
T Consensus 129 Vin~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~-------------------- 185 (279)
T 1thm_A 129 VISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD-------------------- 185 (279)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC--------------------
T ss_pred EEEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeC--------------------
Confidence 9999999853 34677888889999999999999999988778888889999999732
Q ss_pred eeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCC
Q 046220 364 KSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLF 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 443 (774)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 1thm_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecC
Q 046220 444 PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV 523 (774)
Q Consensus 444 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 523 (774)
..+.++.||++||.+ ||+|||++|+++++
T Consensus 186 -------------------------------------------~~~~~~~fS~~G~~~--------dv~APG~~i~s~~~ 214 (279)
T 1thm_A 186 -------------------------------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYP 214 (279)
T ss_dssp -------------------------------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEET
T ss_pred -------------------------------------------CCCCcCCcCCCCCce--------EEEEcCCCeEEEeC
Confidence 124568999999864 99999999999987
Q ss_pred CCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCc
Q 046220 524 PNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPL 603 (774)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 603 (774)
. +.|..++|||||||||||++||| ++|.+++++||++|++||+++...+ .
T Consensus 215 ~--------------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~--------------~ 264 (279)
T 1thm_A 215 T--------------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG--------------T 264 (279)
T ss_dssp T--------------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT--------------T
T ss_pred C--------------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC--------------c
Confidence 6 68999999999999999999999 5899999999999999999875321 3
Q ss_pred ccCCCccCCCCCCC
Q 046220 604 DFGAGHINPNKAMD 617 (774)
Q Consensus 604 ~~G~G~vn~~~A~~ 617 (774)
.||+|+||+.+|++
T Consensus 265 ~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 265 YWAKGRVNAYKAVQ 278 (279)
T ss_dssp TBSSEECCHHHHHH
T ss_pred cccCCeeCHHHHhc
Confidence 79999999999875
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=426.56 Aligned_cols=287 Identities=26% Similarity=0.346 Sum_probs=227.1
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccc
Q 046220 119 VGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196 (774)
Q Consensus 119 ~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~ 196 (774)
|++.. +..+|..+++|+||+|||||||||++||+|.++ +...++|.....
T Consensus 8 W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~- 59 (310)
T 2ixt_A 8 WGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT- 59 (310)
T ss_dssp HHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS-
T ss_pred CchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC-
Confidence 55543 467999999999999999999999999999742 333344443210
Q ss_pred cCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHH
Q 046220 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQ 276 (774)
Q Consensus 197 ~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~ 276 (774)
.......|..||||||||||+|...++ ...+.||||+|+|+.+|++++.+. ++.+++++||+|
T Consensus 60 --------~~~~~~~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~--~~~~~~~~ai~~ 122 (310)
T 2ixt_A 60 --------PINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGS--GYSDDIAAAIRH 122 (310)
T ss_dssp --------CEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSC--CCHHHHHHHHHH
T ss_pred --------CCCCCCCCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEcCCCC--CcHHHHHHHHHH
Confidence 011235678999999999999975221 112589999999999999988775 788999999999
Q ss_pred HHhCCC-----cEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCC--CCCccCCCCceEEecccccCccee
Q 046220 277 AIADGV-----DVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPR--PYSIENGAPWITTVGAGTVDREFA 349 (774)
Q Consensus 277 a~~~gv-----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~--~~~~~~~~p~vitVgA~~~~~~~~ 349 (774)
|+++++ +|||||||... ....+..++.++.++|++||+||||+|.. ...+++..|++|+|||++...
T Consensus 123 a~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~--- 196 (310)
T 2ixt_A 123 AADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ--- 196 (310)
T ss_dssp HHHHHHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE---
T ss_pred HHHhhhccCCCeEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc---
Confidence 999988 99999999863 24567788888999999999999999976 345677889999999842100
Q ss_pred EEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCc
Q 046220 350 ARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRA 429 (774)
Q Consensus 350 ~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga 429 (774)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCC--ccccccCCCCCCCC----
Q 046220 430 AGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSP--QVAKFSSRGPSLRS---- 503 (774)
Q Consensus 430 ~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~Gp~~~~---- 503 (774)
..+ .++.||++||....
T Consensus 197 ---------------------------------------------------------~~g~~~~~~~S~~G~~~~~g~~~ 219 (310)
T 2ixt_A 197 ---------------------------------------------------------QNGTYRVADYSSRGYISTAGDYV 219 (310)
T ss_dssp ---------------------------------------------------------ETTEEEECTTSCCCCTTTTTSSS
T ss_pred ---------------------------------------------------------cCCCeeeccccCCCCccCCcccc
Confidence 011 56789999995321
Q ss_pred CCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccc
Q 046220 504 PWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADV 583 (774)
Q Consensus 504 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 583 (774)
..+.||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++
T Consensus 220 ~~~~~~di~ApG~~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~ 285 (310)
T 2ixt_A 220 IQEGDIEISAPGSSVYSTWYN--------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKS 285 (310)
T ss_dssp CCTTCCCEEEECSSEEEECTT--------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred ccCCCeeEECCCCCEeeecCC--------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcc
Confidence 124599999999999999876 689999999999999999999999999999999999999999998
Q ss_pred cccccccccccCCCccCCCcccCCCccCC
Q 046220 584 LDNAYDMIADISTGVAGTPLDFGAGHINP 612 (774)
Q Consensus 584 ~~~~g~~~~~~~~~~~~~~~~~G~G~vn~ 612 (774)
++..+.. ...+..+..+|||++|+
T Consensus 286 ~~~~~~~-----~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 286 VDIKGGY-----GAAIGDDYASGFGFARV 309 (310)
T ss_dssp SCCCBST-----TCCSSSBTTTBTCBCCC
T ss_pred cCCCCCc-----ccccCCccccccceeec
Confidence 7643211 13456778999999996
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=427.51 Aligned_cols=266 Identities=23% Similarity=0.284 Sum_probs=210.2
Q ss_pred CCCC-CccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCC
Q 046220 131 AGFG-SDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDS 209 (774)
Q Consensus 131 ~~~G-~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~ 209 (774)
..+| +||+|||||||||++||+|.++ .+..+.+... .....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~---------------------------~~~~~~~~~~-----------~~~~~ 44 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA---------------------------DLTVLPTLAP-----------TAARS 44 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC---------------------------EEEECCCSSC-----------CCCCT
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC---------------------------eeecCcCCCC-----------CCCCC
Confidence 3568 6999999999999999999753 1111111111 01112
Q ss_pred CCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECc
Q 046220 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289 (774)
Q Consensus 210 ~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~Sl 289 (774)
..|.+||||||||||+|+..++ +.||||+|+|+.+|++.+.+. ..+..++++||+||++++++||||||
T Consensus 45 d~~~~gHGT~VAGiiag~~~~~----------~~GvAp~a~l~~~kv~~~~~~-~~~~~~i~~ai~~a~~~~~~Vin~S~ 113 (282)
T 3zxy_A 45 DGFMSAHGTHVASIIFGQPETS----------VPGIAPQCRGLIVPIFSDDRR-RITQLDLARGIERAVNAGAHIINISG 113 (282)
T ss_dssp TCHHHHHHHHHHHHHHCCTTSS----------SCCSSTTSEEEEEECSCSSSS-CCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCcccceeehhhccCCce----------eeeeccccceEeeEeeccccc-cchHHHHHHHHHHhhccCCeEEeccC
Confidence 2345789999999999975332 489999999999999865432 15777899999999999999999999
Q ss_pred CCCCC-CCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecC
Q 046220 290 GFPET-TFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYP 368 (774)
Q Consensus 290 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~ 368 (774)
|.... ......+..++..+.++|+++|+||||+|......+...|++|+|||.+
T Consensus 114 G~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------------------- 168 (282)
T 3zxy_A 114 GELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMD------------------------- 168 (282)
T ss_dssp CEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEEC-------------------------
T ss_pred ccccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEc-------------------------
Confidence 97542 2344567778888999999999999999988888888899999999732
Q ss_pred CCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCc
Q 046220 369 ENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFD 448 (774)
Q Consensus 369 ~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 448 (774)
T Consensus 169 -------------------------------------------------------------------------------- 168 (282)
T 3zxy_A 169 -------------------------------------------------------------------------------- 168 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCC
Q 046220 449 MPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPI 528 (774)
Q Consensus 449 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 528 (774)
..+.++.||+||+. ..||||+|||.+|+++++.
T Consensus 169 --------------------------------------~~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~---- 201 (282)
T 3zxy_A 169 --------------------------------------DHGHPLDFSNWGST-----YEQQGILAPGEDILGAKPG---- 201 (282)
T ss_dssp --------------------------------------TTSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT----
T ss_pred --------------------------------------CCCccccccCCCCC-----ccccceeccCcceeeecCC----
Confidence 22466889999875 4689999999999999886
Q ss_pred ccccCCccccccceecccccchhHHHHHHHHHHHHhc----CCCCHHHHHHHHHccccccccccccccccCCCccCCCcc
Q 046220 529 ATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATH----HEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLD 604 (774)
Q Consensus 529 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~----P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 604 (774)
+.|..++|||||||||||++|||++++ |.++|++||++|++||++++.. .+.....
T Consensus 202 ----------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~----------~~~~~~~ 261 (282)
T 3zxy_A 202 ----------GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD----------APEQARR 261 (282)
T ss_dssp ----------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------------CGG
T ss_pred ----------CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC----------CCCccCc
Confidence 789999999999999999999999975 7899999999999999987432 2344568
Q ss_pred cCCCccCCCCCCC
Q 046220 605 FGAGHINPNKAMD 617 (774)
Q Consensus 605 ~G~G~vn~~~A~~ 617 (774)
+|+|+||+.+|++
T Consensus 262 ~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 262 CLAGRLNVSGAFT 274 (282)
T ss_dssp GTTCBCCHHHHHH
T ss_pred eeeeEeCHHHHHH
Confidence 9999999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-50 Score=433.08 Aligned_cols=271 Identities=30% Similarity=0.469 Sum_probs=221.1
Q ss_pred cccccc--cCCCCcCCCCCC--ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeecccc
Q 046220 118 FVGLKK--HAGLWPAAGFGS--DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193 (774)
Q Consensus 118 ~~g~~~--~~~~w~~~~~G~--gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~ 193 (774)
.|++.. ++.+|+.+ +|+ ||+|||||||||++||+|.++ +...++|..+
T Consensus 9 ~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~ 60 (320)
T 2z30_A 9 PWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRG 60 (320)
T ss_dssp CHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGG
T ss_pred CCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCC
Confidence 355543 45689988 899 999999999999999999742 3333344332
Q ss_pred ccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHH
Q 046220 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAG 273 (774)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~a 273 (774)
... .......|..||||||||||+|.. ++. | +.||||+|+|+.+|+++..+. ++.+++++|
T Consensus 61 ~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~~---g-----~~GvAp~a~l~~~~v~~~~g~--~~~~~i~~a 121 (320)
T 2z30_A 61 KVS--------TKLRDCADQNGHGTHVIGTIAALN-NDI---G-----VVGVAPGVQIYSVRVLDARGS--GSYSDIAIG 121 (320)
T ss_dssp CCB--------CCHHHHBCSSSHHHHHHHHHHCCS-SSB---S-----CCCSSTTCEEEEEECSCTTSE--EEHHHHHHH
T ss_pred ccC--------CCCCCCCCCCCCHHHHHHHHHccc-CCC---c-----eEeeCCCCEEEEEEeeCCCCC--ccHHHHHHH
Confidence 100 000123578999999999999973 211 1 489999999999999988775 788999999
Q ss_pred HHHHHhC--------------------CCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCC
Q 046220 274 MDQAIAD--------------------GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGA 333 (774)
Q Consensus 274 i~~a~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~ 333 (774)
|+||+++ +++|||||||... ....+..++.++.++|++||+||||+|.....+++..
T Consensus 122 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~ 198 (320)
T 2z30_A 122 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAY 198 (320)
T ss_dssp HHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTS
T ss_pred HHHHHhCcccccccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccC
Confidence 9999987 9999999999853 2456777788899999999999999998877888889
Q ss_pred CceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCC
Q 046220 334 PWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKG 413 (774)
Q Consensus 334 p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~ 413 (774)
|++|+|||++
T Consensus 199 ~~vi~Vga~~---------------------------------------------------------------------- 208 (320)
T 2z30_A 199 PEVIAVGAID---------------------------------------------------------------------- 208 (320)
T ss_dssp TTEEEEEEEC----------------------------------------------------------------------
T ss_pred CCeEEEEeeC----------------------------------------------------------------------
Confidence 9999999732
Q ss_pred CchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCcccc
Q 046220 414 NITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAK 493 (774)
Q Consensus 414 ~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 493 (774)
..+.++.
T Consensus 209 -------------------------------------------------------------------------~~~~~~~ 215 (320)
T 2z30_A 209 -------------------------------------------------------------------------SNDNIAS 215 (320)
T ss_dssp -------------------------------------------------------------------------TTSCBCT
T ss_pred -------------------------------------------------------------------------CCCCcCc
Confidence 1245788
Q ss_pred ccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhc--------
Q 046220 494 FSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATH-------- 565 (774)
Q Consensus 494 fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------- 565 (774)
||++|| +|+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 216 ~S~~g~----------~v~APG~~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~ 271 (320)
T 2z30_A 216 FSNRQP----------EVSAPGVDILSTYPD--------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKIL 271 (320)
T ss_dssp TSCSSC----------SEEEECSSEEEEETT--------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCCCC----------CEEeCCCCeEEeccC--------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhccccc
Confidence 999987 679999999999876 689999999999999999999999999
Q ss_pred -----CCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCC
Q 046220 566 -----HEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 566 -----P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
|.|++.+||++|++||+++.. +..+..||||+||+.+|++
T Consensus 272 ~~~~~p~lt~~~v~~~L~~ta~~~~~------------~g~~~~~G~G~vd~~~A~~ 316 (320)
T 2z30_A 272 PVGTFDDISKNTVRGILHITADDLGP------------TGWDADYGYGVVRAALAVQ 316 (320)
T ss_dssp CCCCTTCCSTTSHHHHHHHHSBCCSS------------SSSBTTTBTCBCCHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhhCccCCC------------CCCCCCcCCceeCHHHHHH
Confidence 999999999999999998732 2345689999999999876
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-49 Score=472.21 Aligned_cols=363 Identities=20% Similarity=0.196 Sum_probs=248.7
Q ss_pred CCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-----CCCcEE
Q 046220 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-----DGVDVM 285 (774)
Q Consensus 211 ~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-----~gvdVI 285 (774)
.|++||||||||||||.. ++. .+.||||+|+|+.+|+++..+....+..+++++|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~~--------g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SSR--------DVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SSS--------SSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CCC--------CceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478999999999999986 322 248999999999999997654322356778888888887 799999
Q ss_pred EECcCCCCCCCCCcHHHHHHHHHH-cCCcEEEEccCCCCCCCCC--ccC--CCCceEEecccccCcceeEEEEeCCceEE
Q 046220 286 SLSLGFPETTFDENPIAIGAFAAL-KKGIFVACSAGNSGPRPYS--IEN--GAPWITTVGAGTVDREFAARVTLGNEELS 360 (774)
Q Consensus 286 n~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~G~~~~~--~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (774)
|||||........+.+..++.++. ++|++||+||||+|+...+ .++ ..+++|+|||++.+........
T Consensus 338 NmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys------- 410 (1354)
T 3lxu_X 338 NMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYA------- 410 (1354)
T ss_dssp EECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC----------
T ss_pred EcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccccc-------
Confidence 999999764444567777777876 8999999999999976443 445 3899999999643221100000
Q ss_pred EeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC
Q 046220 361 VIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ 440 (774)
Q Consensus 361 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 440 (774)
.
T Consensus 411 -------------------------------------------------~------------------------------ 411 (1354)
T 3lxu_X 411 -------------------------------------------------M------------------------------ 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------c------------------------------
Confidence 0
Q ss_pred CCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEe
Q 046220 441 NLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILG 520 (774)
Q Consensus 441 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 520 (774)
.....+.+++|||+||+.+ +++||||+|||++|.+
T Consensus 412 -------------------------------------------~~~~~g~~asFSS~GPt~d--g~~KpDIaAPG~~I~S 446 (1354)
T 3lxu_X 412 -------------------------------------------REKLPGNVYTWTSRDPCID--GGQGVTVCAPGGAIAS 446 (1354)
T ss_dssp -------------------------------------------------CCCCCCCCSCCSS--SSCCEEEEEEC-----
T ss_pred -------------------------------------------ccCCCCccccccCCCCCcc--CCCcceEEecCceEEE
Confidence 0011257899999999986 7999999999999998
Q ss_pred ecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHH----hcCCCCHHHHHHHHHccccccccccccccccCC
Q 046220 521 AWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----THHEWSSAAIRSAMMTTADVLDNAYDMIADIST 596 (774)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 596 (774)
+..... +.|..++|||||||||||++|||++ .+|+|++.+||++|++||+++..
T Consensus 447 t~~~~~------------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~---------- 504 (1354)
T 3lxu_X 447 VPQFTM------------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY---------- 504 (1354)
T ss_dssp ----------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT----------
T ss_pred eecCCC------------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC----------
Confidence 755322 6899999999999999999999987 79999999999999999998742
Q ss_pred CccCCCcccCCCccCCCCCCCCCeeeeCCchhhhhhhhhcCCCcc-ceEEEecccccccCCCCCCCCCCcEEEEecCCCC
Q 046220 597 GVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQ-QIRVLTGTSNFTCEHGNLDLNYPSFIIILNNTNT 675 (774)
Q Consensus 597 ~~~~~~~~~G~G~vn~~~A~~~glv~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~c~~~~~~ln~ps~~~~~~~~~~ 675 (774)
.+++.||||+||+.+|++..+.|+..+.+++.|+|..++... .|. .+ .+ .. ++.. .
T Consensus 505 ---~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIy--lR--------~~-~~--~~~~-------~ 561 (1354)
T 3lxu_X 505 ---VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIH--LR--------QG-VQ--RNSI-------D 561 (1354)
T ss_dssp ---SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEE--EC--------SS-CC--CSCE-------E
T ss_pred ---CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceE--Ee--------cc-cc--CCce-------E
Confidence 234689999999999999999999999999999999985332 221 11 00 00 1000 0
Q ss_pred ceEEEEEEEEecC---C-CceEE--EEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEE
Q 046220 676 ASFTFKRVLTNVA---V-TRSVY--TAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYL 749 (774)
Q Consensus 676 ~~~~~~rtv~n~~---~-~~~ty--~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~ 749 (774)
..++++-++.|.. . ....| ++.+...+ --|. .|..|.+ .++.++|.|+|++..-. .+.+++.|
T Consensus 562 ~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~L~-------~G~h~~~v 630 (1354)
T 3lxu_X 562 YNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTGLQ-------PGVHSAVI 630 (1354)
T ss_dssp EEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGGGCC-------SEEEEEEE
T ss_pred EEEEEeeeecCcccCChhhccceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCCCCC-------CcceeEEE
Confidence 1122222332211 1 11122 22222211 1232 3777777 68889999999998733 57899999
Q ss_pred EEEeeC---CeeEEEEEEEEEEE
Q 046220 750 TWFEVN---GKHQVRSPIVSAFS 769 (774)
Q Consensus 750 ~~~~~~---~~~~v~~P~~~~~~ 769 (774)
.....+ ..+..|+||.|...
T Consensus 631 ~~~D~~~~~~gp~f~ipvTv~~P 653 (1354)
T 3lxu_X 631 RAYDTDCVQKGSLFEIPVTVVQP 653 (1354)
T ss_dssp EEEESSCTTSCCSEEEEEEEEEC
T ss_pred EEEEcCCcccCceEEeeEEEEee
Confidence 985432 46999999998753
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-50 Score=430.18 Aligned_cols=272 Identities=24% Similarity=0.319 Sum_probs=217.1
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
+++|+....++||+|||||||||++||+|.++ .+.+..+|..+.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~~---------- 54 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSGE---------- 54 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCCC----------
Confidence 45899887779999999999999999999753 122222232221
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcE
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDV 284 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdV 284 (774)
.....|.+||||||||||+|+..+ .+.||||+|+|+.+|++.+.+. .+...++++||+||++++++|
T Consensus 55 --~~~~~d~~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~-~~~~~~i~~ai~~a~~~g~~v 121 (306)
T 4h6w_A 55 --ANANGSMSTHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESL-KLSQLDLSRAIEQAVNNGANI 121 (306)
T ss_dssp ------CCCCHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSC-CCCHHHHHHHHHHHHHTTCSE
T ss_pred --CCCCCCCCCchHHHHHHHHccccC----------Ccceeccccccceeeccccccc-cchHHHHHHHHHHhhccccee
Confidence 112346789999999999997532 2589999999999999865431 167778999999999999999
Q ss_pred EEECcCCCC-CCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEee
Q 046220 285 MSLSLGFPE-TTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363 (774)
Q Consensus 285 In~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g 363 (774)
||+|||... .......+..++..+.++|++||+||||+|.....+++..+++|+|||++
T Consensus 122 i~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~-------------------- 181 (306)
T 4h6w_A 122 INVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMD-------------------- 181 (306)
T ss_dssp EEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEEC--------------------
T ss_pred eeccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEec--------------------
Confidence 999999643 23445667888889999999999999999988778888889999999732
Q ss_pred eeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCC
Q 046220 364 KSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLF 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 443 (774)
T Consensus 182 -------------------------------------------------------------------------------- 181 (306)
T 4h6w_A 182 -------------------------------------------------------------------------------- 181 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecC
Q 046220 444 PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV 523 (774)
Q Consensus 444 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 523 (774)
..+.+++||++|+. ..||||+|||++|+++++
T Consensus 182 -------------------------------------------~~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~ 213 (306)
T 4h6w_A 182 -------------------------------------------DQGKPVDFSNWGDA-----YQKQGILAPGKDILGAKP 213 (306)
T ss_dssp -------------------------------------------TTSCBCSSSCBCHH-----HHHHEEEEECSSEEEECT
T ss_pred -------------------------------------------CCCCccccccccCC-----cCcceeecCCcCcccccC
Confidence 12456789999975 458999999999999988
Q ss_pred CCCCCccccCCccccccceecccccchhHHHHHHHHHHHHh----cCCCCHHHHHHHHHccccccccccccccccCCCcc
Q 046220 524 PNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKAT----HHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599 (774)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 599 (774)
. +.|..++|||||||||||++|||+++ +|.|+|++||++|++||+++...+ .
T Consensus 214 ~--------------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~----------~ 269 (306)
T 4h6w_A 214 N--------------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD----------T 269 (306)
T ss_dssp T--------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT----------C
T ss_pred C--------------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC----------C
Confidence 6 78999999999999999999999865 599999999999999999875332 2
Q ss_pred CCCcccCCCccCCCCCCC
Q 046220 600 GTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 600 ~~~~~~G~G~vn~~~A~~ 617 (774)
.....||+|+||+.+|++
T Consensus 270 ~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 270 DDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp SCGGGGTTCBCCHHHHHH
T ss_pred CCCCCcceeecCHHHHHH
Confidence 233579999999999987
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-50 Score=435.93 Aligned_cols=271 Identities=18% Similarity=0.152 Sum_probs=217.3
Q ss_pred cCCCCcCCCCCC--ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcc
Q 046220 124 HAGLWPAAGFGS--DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKI 201 (774)
Q Consensus 124 ~~~~w~~~~~G~--gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~ 201 (774)
+..+|+. ++|+ ||+||||||||| +||+|.++ ++..++|..+.+
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~~------ 76 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDGS------ 76 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTCC------
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCCC------
Confidence 4568988 8899 999999999999 99999742 333444443210
Q ss_pred cccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC-
Q 046220 202 STTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD- 280 (774)
Q Consensus 202 ~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~- 280 (774)
+.+...+.|..||||||||||+|. . | +.||||+|+|+.+|++++.+ .. ++++||+||+++
T Consensus 77 --~~~~~~~~d~~gHGT~vAgiia~~--~-----g-----~~GvAp~a~l~~~~v~~~~~---~~--~~~~ai~~a~~~~ 137 (347)
T 2iy9_A 77 --PFPVKKSEALYIHGTAMASLIASR--Y-----G-----IYGVYPHALISSRRVIPDGV---QD--SWIRAIESIMSNV 137 (347)
T ss_dssp --SSCCSSSHHHHHHHHHHHHHHHCS--S-----S-----SCCSSTTCEEEEEECCSSBC---TT--HHHHHHHHHHTCT
T ss_pred --CCCCCCCCCCCCcHHHHHHHHhcc--c-----C-----CcccCCCCEEEEEEEecCCC---HH--HHHHHHHHHHhhh
Confidence 111124567889999999999997 1 1 38999999999999998765 22 999999999999
Q ss_pred -----CCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCC-------CCCccCCCC----------ceEE
Q 046220 281 -----GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPR-------PYSIENGAP----------WITT 338 (774)
Q Consensus 281 -----gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------~~~~~~~~p----------~vit 338 (774)
|++|||||||..........+..++..+.++|++||+||||+|.. ...+++..+ ++|+
T Consensus 138 ~~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~ 217 (347)
T 2iy9_A 138 FLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIR 217 (347)
T ss_dssp TSCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEE
T ss_pred hcccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEE
Confidence 999999999976544456678888889999999999999999975 446677778 8999
Q ss_pred eccccc--CcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCch
Q 046220 339 VGAGTV--DREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNIT 416 (774)
Q Consensus 339 VgA~~~--~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~ 416 (774)
|||++. +.. .
T Consensus 218 Vga~~~~~~g~-----------~--------------------------------------------------------- 229 (347)
T 2iy9_A 218 VAALAQYRKGE-----------T--------------------------------------------------------- 229 (347)
T ss_dssp EEEECCCCTTS-----------C---------------------------------------------------------
T ss_pred EEEcccCCCCc-----------e---------------------------------------------------------
Confidence 998532 100 0
Q ss_pred hHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccC
Q 046220 417 VSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSS 496 (774)
Q Consensus 417 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 496 (774)
....+.++.||+
T Consensus 230 --------------------------------------------------------------------~~~~~~~~~fS~ 241 (347)
T 2iy9_A 230 --------------------------------------------------------------------PVLHGGGITGSR 241 (347)
T ss_dssp --------------------------------------------------------------------CCBCCCSSSCBC
T ss_pred --------------------------------------------------------------------ecccCCCCCCCC
Confidence 000134579999
Q ss_pred CCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046220 497 RGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSA 576 (774)
Q Consensus 497 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~ 576 (774)
+||+ ||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++
T Consensus 242 ~G~~-------~~di~APG~~i~s~~~~--------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~ 300 (347)
T 2iy9_A 242 FGNN-------WVDIAAPGQNITFLRPD--------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRT 300 (347)
T ss_dssp BCTT-------TCSEEEECSSEEEECTT--------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred CCCC-------CCEEEeCCCCeEeecCC--------------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 9995 67999999999999886 78999999999999999999999999999999999999
Q ss_pred HHccccccccccccccccCCCccCCCcccCCCccCCCCCCCC
Q 046220 577 MMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDP 618 (774)
Q Consensus 577 L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~ 618 (774)
|++||+++...+ ...+|+|+||+.+|++.
T Consensus 301 L~~tA~~~~~~~-------------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 301 LLESADKYPSLV-------------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHHHSEECGGGT-------------TTSGGGEECCHHHHHHH
T ss_pred HHHhCccCCCCC-------------CccccCCEecHHHHHHH
Confidence 999999875321 25899999999999883
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=439.08 Aligned_cols=294 Identities=24% Similarity=0.307 Sum_probs=224.6
Q ss_pred CCCCc-CCCCCCccEEEEEcCCCCC------CCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeecccccccc
Q 046220 125 AGLWP-AAGFGSDVIVGVIDSGVWP------ESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQY 197 (774)
Q Consensus 125 ~~~w~-~~~~G~gVvVgVIDtGid~------~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~ 197 (774)
+.+|. .+++|+||+|||||||||+ .||+|.++ +...++|.+.
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~---------------------------i~~~~~~~~~---- 59 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK---------------------------ITALYALGRT---- 59 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC---------------------------EEEEEETTTT----
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC---------------------------EeeeccccCC----
Confidence 45787 7899999999999999999 79999742 3333444321
Q ss_pred CCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHH
Q 046220 198 GLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQA 277 (774)
Q Consensus 198 ~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a 277 (774)
..+.|..||||||||||+|++.. +.||||+|+|+.+|+++..+...+..+++.++|++|
T Consensus 60 ----------~~~~d~~gHGT~VAgiiag~g~~-----------~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a 118 (434)
T 1wmd_A 60 ----------NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQA 118 (434)
T ss_dssp ----------TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHH
T ss_pred ----------CCCCCCCCcHHHHHHHHHcCCCC-----------ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHH
Confidence 24668899999999999986421 479999999999999987663112457899999999
Q ss_pred HhCCCcEEEECcCCCCCCCCCcHHHHHHHHH-HcCCcEEEEccCCCCCCC--CCccCCCCceEEecccccCcceeEEEEe
Q 046220 278 IADGVDVMSLSLGFPETTFDENPIAIGAFAA-LKKGIFVACSAGNSGPRP--YSIENGAPWITTVGAGTVDREFAARVTL 354 (774)
Q Consensus 278 ~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~--~~~~~~~p~vitVgA~~~~~~~~~~~~~ 354 (774)
+++|++|||||||......+ +....++.++ .++|++||+||||+|... ...++.++++|+|||++..+..
T Consensus 119 ~~~g~~Vin~S~G~~~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~------ 191 (434)
T 1wmd_A 119 YSAGARIHTNSWGAAVNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS------ 191 (434)
T ss_dssp HHTTCSEEEECCCBCCTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG------
T ss_pred HhcCCeEEEecCCCCcCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcc------
Confidence 99999999999998652222 3444455454 589999999999999764 3567788999999986432210
Q ss_pred CCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEE
Q 046220 355 GNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAII 434 (774)
Q Consensus 355 ~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~ 434 (774)
.+.
T Consensus 192 --------------------------------------------------------~~~--------------------- 194 (434)
T 1wmd_A 192 --------------------------------------------------------FGS--------------------- 194 (434)
T ss_dssp --------------------------------------------------------GCG---------------------
T ss_pred --------------------------------------------------------cCc---------------------
Confidence 000
Q ss_pred ecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeC
Q 046220 435 SADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAP 514 (774)
Q Consensus 435 ~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 514 (774)
.....+.++.|||+||+.+ +++||||+||
T Consensus 195 -------------------------------------------------~~~~~~~~a~fS~~G~~~~--g~~kpdi~Ap 223 (434)
T 1wmd_A 195 -------------------------------------------------YADNINHVAQFSSRGPTKD--GRIKPDVMAP 223 (434)
T ss_dssp -------------------------------------------------GGSCTTSBCTTSCCCCCTT--SCCCCCEEEE
T ss_pred -------------------------------------------------ccCCCCccccccCCCCCCC--CCCCceEEcC
Confidence 0012457899999999986 8999999999
Q ss_pred CCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCC-----CHHHHHHHHHccccccccccc
Q 046220 515 GVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEW-----SSAAIRSAMMTTADVLDNAYD 589 (774)
Q Consensus 515 G~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~-----s~~~ik~~L~~TA~~~~~~g~ 589 (774)
|++|+++++......... .... +.|..++|||||||||||++|||+|++|++ ++++||++|++||+++.
T Consensus 224 G~~i~s~~~~~~~~~~~~-~~~~-~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~---- 297 (434)
T 1wmd_A 224 GTFILSARSSLAPDSSFW-ANHD-SKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG---- 297 (434)
T ss_dssp CSSEEEECCTTCCGGGSS-EEEE-TTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS----
T ss_pred CCCeEecCCCCCCCcccc-cCCC-CceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC----
Confidence 999999986532111000 0011 689999999999999999999999999875 89999999999998752
Q ss_pred cccccCCCccCCCcccCCCccCCCCCCCCC
Q 046220 590 MIADISTGVAGTPLDFGAGHINPNKAMDPG 619 (774)
Q Consensus 590 ~~~~~~~~~~~~~~~~G~G~vn~~~A~~~g 619 (774)
...+...||||+||+.+|++..
T Consensus 298 --------~~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 298 --------LGYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp --------SCSSCTTTTTCBCCHHHHHTCE
T ss_pred --------CCCCCccCCcCeEeHHHhcccc
Confidence 2345679999999999999754
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-49 Score=427.54 Aligned_cols=299 Identities=21% Similarity=0.277 Sum_probs=219.9
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCcee---eeeeeccccccccCCc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKL---IGARSFNKGLKQYGLK 200 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki---~g~~~f~~~~~~~~~~ 200 (774)
+..+|+.+++|+||+||||||||+ +||+|.++-.. +.............+.+. .....+.+.+...
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~-------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--- 89 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP-------GYDFISNSQISLDGDGRDADPFDEGDWFDNWACG--- 89 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC-------CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS---
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc-------CccccCCccccccCCCccCCcccccccccccccc---
Confidence 356899999999999999999998 99999854111 110000000000000000 0000000000000
Q ss_pred ccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-
Q 046220 201 ISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA- 279 (774)
Q Consensus 201 ~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~- 279 (774)
..+.+.....|..||||||||||+|...++.+ +.||||+|+|+.+|+++..+ +..++++++|+||++
T Consensus 90 -~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~~v~~~~~---~~~~~~~~ai~~a~~~ 157 (340)
T 3lpc_A 90 -GRPDPRKERSDSSWHGSHVAGTIAAVTNNRIG--------VAGVAYGAKVVPVRALGRCG---GYDSDISDGLYWAAGG 157 (340)
T ss_dssp -CTTCGGGSCBCCCCHHHHHHHHHHCCCSSSSS--------CCCTTTTSEEEEEECCBTTB---CCHHHHHHHHHHHHTC
T ss_pred -CCCCcccCCCCCCCCHHHHHHHHHccCCCCCc--------ceeecCCCEEEEEEEecCCC---CcHHHHHHHHHHHhcc
Confidence 01122234578899999999999998655432 48999999999999998877 788999999999998
Q ss_pred ---------CCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC-CccCCCCceEEecccccCccee
Q 046220 280 ---------DGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY-SIENGAPWITTVGAGTVDREFA 349 (774)
Q Consensus 280 ---------~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~ 349 (774)
.+++|||||||... .....+..++.++.++|++||+||||+|.... ..++..+++|+|||++
T Consensus 158 ~~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------ 229 (340)
T 3lpc_A 158 RIAGIPENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT------ 229 (340)
T ss_dssp CCTTSCCCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC------
T ss_pred cccccccccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC------
Confidence 89999999999743 23455677778889999999999999997643 4567788899999732
Q ss_pred EEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCc
Q 046220 350 ARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRA 429 (774)
Q Consensus 350 ~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga 429 (774)
T Consensus 230 -------------------------------------------------------------------------------- 229 (340)
T 3lpc_A 230 -------------------------------------------------------------------------------- 229 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccC
Q 046220 430 AGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKP 509 (774)
Q Consensus 430 ~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 509 (774)
..+.++.||++|| ||
T Consensus 230 ---------------------------------------------------------~~~~~~~~S~~g~--------~~ 244 (340)
T 3lpc_A 230 ---------------------------------------------------------SRGIRASFSNYGV--------DV 244 (340)
T ss_dssp ---------------------------------------------------------TTSSBCTTCCBST--------TC
T ss_pred ---------------------------------------------------------CCCCcCCCCCCCC--------Cc
Confidence 2246789999998 45
Q ss_pred eeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHh-c---CCCCHHHHHHHHHccccccc
Q 046220 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKAT-H---HEWSSAAIRSAMMTTADVLD 585 (774)
Q Consensus 510 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---P~~s~~~ik~~L~~TA~~~~ 585 (774)
||+|||.+|+++++...... .. ..|..++|||||||||||++|||+|+ + |.+++++||++|++||+++.
T Consensus 245 di~ApG~~i~s~~~~~~~~~------~~-~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~ 317 (340)
T 3lpc_A 245 DLAAPGQDILSTVDSGTRRP------VS-DAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN 317 (340)
T ss_dssp CEEEECSSEEEEEESCSSSC------CS-EEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCS
T ss_pred eEEecCCCeecccCCCCcCC------CC-CcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCC
Confidence 99999999999987632110 11 46999999999999999999999998 6 99999999999999999873
Q ss_pred cccccccccCCCccCCCcccCCCccCCCCCCCC
Q 046220 586 NAYDMIADISTGVAGTPLDFGAGHINPNKAMDP 618 (774)
Q Consensus 586 ~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~ 618 (774)
. .....||+|+||+.+|++.
T Consensus 318 ~-------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 318 G-------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp S-------------CCSSCCCSSBCCHHHHHHH
T ss_pred C-------------CCCCCcccceecHHHHHHH
Confidence 1 2345899999999999874
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=404.25 Aligned_cols=236 Identities=28% Similarity=0.391 Sum_probs=201.9
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|..+++|+||+|||||||||++||+|.++ +...++|.++.
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~---------- 61 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDND---------- 61 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTTB----------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCCC----------
Confidence 45899999999999999999999999999742 33334454321
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC--CC
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD--GV 282 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~--gv 282 (774)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+. ++.+++++||+|++++ ++
T Consensus 62 ---~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~--~~~~~~~~ai~~a~~~~~~~ 122 (284)
T 1sh7_A 62 ---ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGS--GTTSGVISGVDWVAQNASGP 122 (284)
T ss_dssp ---SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSC--BCHHHHHHHHHHHHHHCCSS
T ss_pred ---CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCC--cCHHHHHHHHHHHHhCCCCC
Confidence 235688999999999999873 69999999999999988776 7889999999999984 79
Q ss_pred cEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEEE
Q 046220 283 DVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELSV 361 (774)
Q Consensus 283 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 361 (774)
+|||||||.. ....+..++.++.++|++||+||||+|... ...++..|++|+|||++
T Consensus 123 ~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------ 180 (284)
T 1sh7_A 123 SVANMSLGGG----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTT------------------ 180 (284)
T ss_dssp EEEEECCCBS----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEEC------------------
T ss_pred cEEEeCCCCC----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEec------------------
Confidence 9999999985 346778888889999999999999999754 34567788999999732
Q ss_pred eeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC
Q 046220 362 IGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN 441 (774)
Q Consensus 362 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 441 (774)
T Consensus 181 -------------------------------------------------------------------------------- 180 (284)
T 1sh7_A 181 -------------------------------------------------------------------------------- 180 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEee
Q 046220 442 LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGA 521 (774)
Q Consensus 442 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 521 (774)
..+.++.||++||.+ ||+|||++|+++
T Consensus 181 ---------------------------------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~ 207 (284)
T 1sh7_A 181 ---------------------------------------------SSDSRSSFSNWGSCV--------DLFAPGSQIKSA 207 (284)
T ss_dssp ---------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ---------------------------------------------CCCCcCcccCCCCcc--------EEEeccCCeEEe
Confidence 124678999999965 999999999999
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccc
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~ 585 (774)
++. +.|..++|||||||||||++|||+|++|+|++++||++|++||++..
T Consensus 208 ~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 208 WYD--------------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp CTT--------------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred cCC--------------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 876 68999999999999999999999999999999999999999999764
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=396.00 Aligned_cols=237 Identities=29% Similarity=0.364 Sum_probs=200.3
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|..+++|+||+|||||||||++||+|.++ +...++|.++
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~~----------- 62 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFIDN----------- 62 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTTT-----------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCCC-----------
Confidence 45799999999999999999999999999742 2333444432
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh--CCC
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA--DGV 282 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~--~gv 282 (774)
..++.|..||||||||||+|.. .||||+|+|+.+|++++.+. ++.++++++|+|+++ .++
T Consensus 63 --~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~--~~~~~~~~ai~~a~~~~~g~ 124 (278)
T 2b6n_A 63 --DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGS--GSNSGVIAGINWVKNNASGP 124 (278)
T ss_dssp --BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHCCSS
T ss_pred --CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCC--ccHHHHHHHHHHHHhCCCCC
Confidence 1235688999999999999862 69999999999999988776 788999999999998 599
Q ss_pred cEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC-CccCCCCceEEecccccCcceeEEEEeCCceEEE
Q 046220 283 DVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY-SIENGAPWITTVGAGTVDREFAARVTLGNEELSV 361 (774)
Q Consensus 283 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 361 (774)
+|||||||... ...+..++.++.++|++||+||||+|.... ..++..+++|+|||++
T Consensus 125 ~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------ 182 (278)
T 2b6n_A 125 AVANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTT------------------ 182 (278)
T ss_dssp EEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC------------------
T ss_pred eEEEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeC------------------
Confidence 99999999853 466777888899999999999999997643 3567788899998732
Q ss_pred eeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC
Q 046220 362 IGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN 441 (774)
Q Consensus 362 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 441 (774)
T Consensus 183 -------------------------------------------------------------------------------- 182 (278)
T 2b6n_A 183 -------------------------------------------------------------------------------- 182 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEee
Q 046220 442 LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGA 521 (774)
Q Consensus 442 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 521 (774)
..+.++.||++||.+ ||+|||++|+++
T Consensus 183 ---------------------------------------------~~~~~~~~S~~G~~~--------di~ApG~~i~s~ 209 (278)
T 2b6n_A 183 ---------------------------------------------SNDSRSSFSNYGTCL--------DIYAPGSSITSS 209 (278)
T ss_dssp ---------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ---------------------------------------------CCCCcCCcCCCCCCC--------eEEeCCCCeECc
Confidence 124678899999854 999999999999
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccc
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 584 (774)
+.... +.|..++|||||||||||++|||+|++|+|++.+||++|++||++.
T Consensus 210 ~~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 210 WYTSN------------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp CTTST------------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred ccCCC------------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 86532 5789999999999999999999999999999999999999999875
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=400.31 Aligned_cols=228 Identities=31% Similarity=0.409 Sum_probs=194.8
Q ss_pred CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCC
Q 046220 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206 (774)
Q Consensus 127 ~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~ 206 (774)
.|+. .+|+||+|+|||||||++||+|.++ +...++|.+
T Consensus 24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~~-------------- 61 (279)
T 2pwa_A 24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYYY-------------- 61 (279)
T ss_dssp ECCT-TTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESSS--------------
T ss_pred cccC-CCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCCC--------------
Confidence 3543 7899999999999999999999742 223333431
Q ss_pred CCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCC----
Q 046220 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGV---- 282 (774)
Q Consensus 207 ~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gv---- 282 (774)
.+.|..||||||||||+|. ..||||+|+|+.+|++++.+. ++.+++++||+|++++++
T Consensus 62 --~~~d~~gHGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~g~--~~~~~~~~ai~~a~~~~~~~~~ 123 (279)
T 2pwa_A 62 --SSRDGNGHGTHCAGTVGSR--------------TYGVAKKTQLFGVKVLDDNGS--GQYSTIIAGMDFVASDKNNRNC 123 (279)
T ss_dssp --CSSCSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHGGGSCC
T ss_pred --CCCCCCCCHHHHHHHHHhc--------------ccccCCCCEEEEEEeEcCCCC--cCHHHHHHHHHHHHhcCccccC
Confidence 2557899999999999986 269999999999999998776 788999999999999887
Q ss_pred ---cEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC-CccCCCCceEEecccccCcceeEEEEeCCce
Q 046220 283 ---DVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY-SIENGAPWITTVGAGTVDREFAARVTLGNEE 358 (774)
Q Consensus 283 ---dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 358 (774)
+|||||||.. ..+.+..++.++.++|++||+||||+|.... ..++..|++|+|||++
T Consensus 124 ~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------------- 184 (279)
T 2pwa_A 124 PKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD--------------- 184 (279)
T ss_dssp TTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC---------------
T ss_pred CCccEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEec---------------
Confidence 9999999974 3467788888999999999999999997643 4567789999999732
Q ss_pred EEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC
Q 046220 359 LSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T 2pwa_A 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCce
Q 046220 439 RQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDI 518 (774)
Q Consensus 439 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 518 (774)
..+.++.||++||.+ ||+|||++|
T Consensus 185 ------------------------------------------------~~~~~~~~S~~G~~~--------di~APG~~i 208 (279)
T 2pwa_A 185 ------------------------------------------------RYDRRSSFSNYGSVL--------DIFGPGTDI 208 (279)
T ss_dssp ------------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSE
T ss_pred ------------------------------------------------CCCCcCCcCCCCCcc--------eEEEecCCe
Confidence 124678999999965 999999999
Q ss_pred EeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccc
Q 046220 519 LGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584 (774)
Q Consensus 519 ~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 584 (774)
+++++. +.|..++|||||||||||++|||+|+ |.+++.+||++|++||++.
T Consensus 209 ~s~~~~--------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~ 259 (279)
T 2pwa_A 209 LSTWIG--------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKG 259 (279)
T ss_dssp EEEETT--------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEES
T ss_pred EEeecC--------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccc
Confidence 999886 67899999999999999999999999 9999999999999999975
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=398.24 Aligned_cols=236 Identities=28% Similarity=0.369 Sum_probs=201.4
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|..+.+|+||+|||||||||++||+|.++ +...++|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------ 61 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALG------------ 61 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTS------------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCC------------
Confidence 46899999999999999999999999999742 222333332
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC--CC
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD--GV 282 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~--gv 282 (774)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+. ++.++++++|+|++++ ++
T Consensus 62 ---~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~~ 122 (276)
T 4dzt_A 62 ---GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGS--GSTSGVIAGVDWVTRNHRRP 122 (276)
T ss_dssp ---SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHCCSS
T ss_pred ---CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCC--cCHHHHHHHHHHHHhcCCCC
Confidence 235678899999999999873 69999999999999988776 7889999999999997 89
Q ss_pred cEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCC-ccCCCCceEEecccccCcceeEEEEeCCceEEE
Q 046220 283 DVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYS-IENGAPWITTVGAGTVDREFAARVTLGNEELSV 361 (774)
Q Consensus 283 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 361 (774)
+|||||||... ...+..++.++.++|+++|+||||+|..... .++..+++|+|||.+
T Consensus 123 ~vin~S~g~~~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------ 180 (276)
T 4dzt_A 123 AVANMSLGGGV----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT------------------ 180 (276)
T ss_dssp EEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC------------------
T ss_pred eEEEECCCCCC----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC------------------
Confidence 99999999743 5677888889999999999999999976443 367788889988732
Q ss_pred eeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC
Q 046220 362 IGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN 441 (774)
Q Consensus 362 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 441 (774)
T Consensus 181 -------------------------------------------------------------------------------- 180 (276)
T 4dzt_A 181 -------------------------------------------------------------------------------- 180 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEee
Q 046220 442 LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGA 521 (774)
Q Consensus 442 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 521 (774)
..+.++.||++||.. ||+|||++|+++
T Consensus 181 ---------------------------------------------~~~~~~~~S~~g~~~--------dv~ApG~~i~s~ 207 (276)
T 4dzt_A 181 ---------------------------------------------SSDARASFSNYGSCV--------DLFAPGASIPSA 207 (276)
T ss_dssp ---------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ---------------------------------------------CCCCcCCcCCCCCCc--------eEEeCCCCeEcc
Confidence 224678999999976 999999999999
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccc
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~ 585 (774)
+.... ..|..++|||||||+|||++|||+|++|++++++||++|++||++..
T Consensus 208 ~~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 208 WYTSD------------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp CTTSS------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred ccCCC------------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 87632 57899999999999999999999999999999999999999999864
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=424.69 Aligned_cols=291 Identities=16% Similarity=0.140 Sum_probs=214.6
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
+..+|..+++|+||+|||||||||++||+|.++-. ....++|.++. ..
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~-------~~ 74 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD-------------------------PGASFDVNDQD-------PD 74 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC-------------------------GGGCEETTTTB-------SC
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC-------------------------ccCcccccCCC-------CC
Confidence 35589999999999999999999999999985300 00123343321 11
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-CCC
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-DGV 282 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-~gv 282 (774)
+.+...+.|.++|||||||||||...++.+ +.||||+|+|+.+|+++ +..+++++|++++++ +++
T Consensus 75 p~~~~~~~d~~gHGT~vAGiiaa~~~n~~g--------~~GvAp~a~i~~~rv~~------g~~~~~~~ai~~a~~~~~~ 140 (471)
T 1p8j_A 75 PQPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLD------GEVTDAVEARSLGLNPNHI 140 (471)
T ss_dssp CCCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSS------SCCCHHHHHHHHTSCTTTC
T ss_pred CCCccCCCCCCCcHHHHHHHHHeeccCCCC--------CEEECCCCeEEEEEccC------CchhHHHHHHHhhhccCCC
Confidence 112224568899999999999997654432 48999999999999985 356789999999999 899
Q ss_pred cEEEECcCCCCCC----CCCcHHHHHHHHHHc-----CCcEEEEccCCCCCCCCC----ccCCCCceEEecccccCccee
Q 046220 283 DVMSLSLGFPETT----FDENPIAIGAFAALK-----KGIFVACSAGNSGPRPYS----IENGAPWITTVGAGTVDREFA 349 (774)
Q Consensus 283 dVIn~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~~ 349 (774)
+|||||||..... .....+..++.++.+ +|++||+||||+|..... ....++++|+|||++
T Consensus 141 ~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~------ 214 (471)
T 1p8j_A 141 HIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT------ 214 (471)
T ss_dssp CEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC------
T ss_pred eEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEeccc------
Confidence 9999999985421 112334445555543 699999999999975321 123457888888732
Q ss_pred EEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCc
Q 046220 350 ARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRA 429 (774)
Q Consensus 350 ~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga 429 (774)
T Consensus 215 -------------------------------------------------------------------------------- 214 (471)
T 1p8j_A 215 -------------------------------------------------------------------------------- 214 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccC
Q 046220 430 AGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKP 509 (774)
Q Consensus 430 ~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 509 (774)
..+.++.||++||... ...+|
T Consensus 215 ---------------------------------------------------------~~g~~a~~S~~g~~~~--~~~~~ 235 (471)
T 1p8j_A 215 ---------------------------------------------------------QFGNVPWYSEACSSTL--ATTYS 235 (471)
T ss_dssp ---------------------------------------------------------TTSCCCTTCCBCTTCC--EEEEC
T ss_pred ---------------------------------------------------------CCCCcccccCCCCcce--EEeCC
Confidence 2246789999999875 34456
Q ss_pred eeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccc
Q 046220 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYD 589 (774)
Q Consensus 510 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~ 589 (774)
...+||.+|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||++++....
T Consensus 236 ~~~~~g~~i~st~~~~-------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~ 302 (471)
T 1p8j_A 236 SGNQNEKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNAD 302 (471)
T ss_dssp CCSTTSCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCS
T ss_pred CCCCCCCCEEEeeCCC-------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCC
Confidence 6666678999987641 568999999999999999999999999999999999999999998864322
Q ss_pred cccccCCCccCCCcccCCCccCCCCCCCCC
Q 046220 590 MIADISTGVAGTPLDFGAGHINPNKAMDPG 619 (774)
Q Consensus 590 ~~~~~~~~~~~~~~~~G~G~vn~~~A~~~g 619 (774)
...... ........||||+||+.+|++..
T Consensus 303 ~~~~n~-~g~~~~~~~G~G~vda~~Av~~a 331 (471)
T 1p8j_A 303 DWATNG-VGRKVSHSYGYGLLDAGAMVALA 331 (471)
T ss_dssp CCEECT-TSCEEBTTTBTCBCCHHHHHHHH
T ss_pred CceecC-CCcccCCCCCCEEEcHhHHHHHh
Confidence 221111 11123468999999999998843
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=413.24 Aligned_cols=279 Identities=20% Similarity=0.180 Sum_probs=202.0
Q ss_pred CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCC
Q 046220 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206 (774)
Q Consensus 127 ~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~ 206 (774)
.|..+++|+||+|+|||||||++||+|.++- ....+.+..+. ++ ...
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------------~~~~~~~v~~~---dg----~~f 64 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------------MVTDFENVPEE---DG----TRF 64 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE--------------------------EEEEEECCCCC---C--------
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------------cccCcccccCC---CC----ccc
Confidence 6888999999999999999999999998530 00011111000 00 000
Q ss_pred CCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC------
Q 046220 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD------ 280 (774)
Q Consensus 207 ~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~------ 280 (774)
...+.|..||||||||||+|+. .||||+|+|+.+|++++++. ++.+++++||+|+++.
T Consensus 65 ~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~--g~~s~ii~ai~~a~~~~~~~~~ 128 (546)
T 2qtw_B 65 HRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGK--GTVSGTLIGLEFIRKSQLVQPV 128 (546)
T ss_dssp ---CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSE--EEHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHhhhhccC
Confidence 1235688999999999999873 69999999999999988776 7889999999999984
Q ss_pred CCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceE
Q 046220 281 GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEEL 359 (774)
Q Consensus 281 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 359 (774)
+++|||||||+. +...+..++.++.++|++||+||||+|... ...++..|++|+|||++.+...
T Consensus 129 g~~VINmSlGg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~----------- 193 (546)
T 2qtw_B 129 GPLVVLLPLAGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----------- 193 (546)
T ss_dssp SCEEEEECEEEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-----------
T ss_pred CCeEEEecCCCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-----------
Confidence 899999999974 346778888899999999999999999764 3457788999999985321110
Q ss_pred EEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCC
Q 046220 360 SVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR 439 (774)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~ 439 (774)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceE
Q 046220 440 QNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDIL 519 (774)
Q Consensus 440 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 519 (774)
...-..||++||. |||+|||++|+
T Consensus 194 ------------------------------------------------a~~s~~fSn~G~~--------vDI~APG~~I~ 217 (546)
T 2qtw_B 194 ------------------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDII 217 (546)
T ss_dssp ------------------------------------------------CEETTEECCBSTT--------CCEEEECSSEE
T ss_pred ------------------------------------------------ccccCCcCCCCCc--------ceEEecCccEE
Confidence 0000138999984 49999999999
Q ss_pred eecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccccccccccc------c
Q 046220 520 GAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIA------D 593 (774)
Q Consensus 520 sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~------~ 593 (774)
++++... ..|..++|||||||||||++|||+|++|+|+++|||++|++||.+.......+. .
T Consensus 218 St~~~~~------------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~t 285 (546)
T 2qtw_B 218 GASSDCS------------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLT 285 (546)
T ss_dssp EECTTST------------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTS
T ss_pred eeccCCC------------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCC
Confidence 9987632 578999999999999999999999999999999999999999986532211000 0
Q ss_pred cC--CCccCCCcccCCCc--cCCCCCCC
Q 046220 594 IS--TGVAGTPLDFGAGH--INPNKAMD 617 (774)
Q Consensus 594 ~~--~~~~~~~~~~G~G~--vn~~~A~~ 617 (774)
+. ...+.....+|+|+ .++..+..
T Consensus 286 pN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 286 PNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp CCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred ccchhccCCcccccCCCcchhchhccCC
Confidence 00 01122455678888 77777664
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=417.97 Aligned_cols=281 Identities=21% Similarity=0.213 Sum_probs=211.8
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|..+++|+||+|||||||||++||+|.++-. ..+.++|.++.
T Consensus 44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~---------- 88 (503)
T 2id4_A 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------------------------AEGSWDFNDNT---------- 88 (503)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------------------------GGGCEETTTTB----------
T ss_pred HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhccc-------------------------ccCcccCCCCC----------
Confidence 4589999999999999999999999999985310 01223444321
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcE
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDV 284 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdV 284 (774)
....+..|.+||||||||||||...++.+ +.||||+|+|+.+|+++.. ++..++++||+||++++ +|
T Consensus 89 ~~~~p~~d~~gHGT~vAGiiaa~~~n~~~--------~~GvAp~a~i~~~rv~~~~----~~~~~~~~ai~~a~~~~-~I 155 (503)
T 2id4_A 89 NLPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSGD----ITTEDEAASLIYGLDVN-DI 155 (503)
T ss_dssp SCCCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTSC----CCHHHHHHHTTTTTTTC-SE
T ss_pred CCCCCCCCCCChHHHHHHHHHhccCCCCC--------cEEECCCCEEEEEEeeCCC----CChHHHHHHHHhHhhcC-CE
Confidence 01122357889999999999998644432 4799999999999998632 57889999999999998 99
Q ss_pred EEECcCCCCCC----CCCcHHHHHHHHHH-----cCCcEEEEccCCCCCCCC--Ccc--CCCCceEEecccccCcceeEE
Q 046220 285 MSLSLGFPETT----FDENPIAIGAFAAL-----KKGIFVACSAGNSGPRPY--SIE--NGAPWITTVGAGTVDREFAAR 351 (774)
Q Consensus 285 In~SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~--~~~--~~~p~vitVgA~~~~~~~~~~ 351 (774)
||||||..... .....+..++.++. .+|++||+||||+|.... .++ ...+++|+|||++
T Consensus 156 in~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~-------- 227 (503)
T 2id4_A 156 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID-------- 227 (503)
T ss_dssp EEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC--------
T ss_pred EEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC--------
Confidence 99999986421 12234566666665 479999999999996532 222 2456788888732
Q ss_pred EEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceE
Q 046220 352 VTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAG 431 (774)
Q Consensus 352 ~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g 431 (774)
T Consensus 228 -------------------------------------------------------------------------------- 227 (503)
T 2id4_A 228 -------------------------------------------------------------------------------- 227 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCee
Q 046220 432 AIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDI 511 (774)
Q Consensus 432 ~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI 511 (774)
..+.+++||++||.. |+
T Consensus 228 -------------------------------------------------------~~~~~a~~S~~g~~~--------~~ 244 (503)
T 2id4_A 228 -------------------------------------------------------HKDLHPPYSEGCSAV--------MA 244 (503)
T ss_dssp -------------------------------------------------------TTSCCCTTCCCCTTE--------EE
T ss_pred -------------------------------------------------------CCCCcCCcCCCCCcc--------eE
Confidence 224568999999987 77
Q ss_pred Ee----CCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccc
Q 046220 512 LA----PGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNA 587 (774)
Q Consensus 512 ~A----PG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~ 587 (774)
+| ||..|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|+.||+++...
T Consensus 245 ~a~~~gpG~~I~st~~~~-------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~ 311 (503)
T 2id4_A 245 VTYSSGSGEYIHSSDING-------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN 311 (503)
T ss_dssp EEECSBTTBCEEEECSTT-------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTC
T ss_pred eecCCCCCCceEeecCCC-------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCC
Confidence 77 899999995431 6799999999999999999999999999999999999999999987643
Q ss_pred -cccccccCCCccCCCcccCCCccCCCCCCCC
Q 046220 588 -YDMIADISTGVAGTPLDFGAGHINPNKAMDP 618 (774)
Q Consensus 588 -g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~ 618 (774)
........ ........||||+||+.+|++.
T Consensus 312 ~~~~~~~~~-~g~~~~~~~G~G~vda~~Av~~ 342 (503)
T 2id4_A 312 ADGDWRDSA-MGKKYSHRYGFGKIDAHKLIEM 342 (503)
T ss_dssp GGGCCEECS-SSSEEBTTTBTCBCCHHHHHHH
T ss_pred cCCCceecC-CCCccCcccCCcEecHHHHHHH
Confidence 11111111 1122345899999999999884
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=386.61 Aligned_cols=229 Identities=31% Similarity=0.408 Sum_probs=195.0
Q ss_pred CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCC
Q 046220 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206 (774)
Q Consensus 127 ~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~ 206 (774)
+|+.. +|+||+|||||||||++||+|.++ +...++|..+
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------------- 63 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAST------------- 63 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSSS-------------
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCCC-------------
Confidence 56655 899999999999999999999742 2333333322
Q ss_pred CCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCC-----
Q 046220 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADG----- 281 (774)
Q Consensus 207 ~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~g----- 281 (774)
..|..||||||||||+|+. .||||+|+|+.+|+++..+. ++.++++++|+|+++++
T Consensus 64 ---~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~~~~ 124 (279)
T 3f7m_A 64 ---ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGS--GSLSNIIAGMDFVASDRQSRNC 124 (279)
T ss_dssp ---SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHGGGSCC
T ss_pred ---CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCC--cCHHHHHHHHHHHHhccccccC
Confidence 2278899999999999862 69999999999999988776 78899999999999976
Q ss_pred --CcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCC-ccCCCCceEEecccccCcceeEEEEeCCce
Q 046220 282 --VDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYS-IENGAPWITTVGAGTVDREFAARVTLGNEE 358 (774)
Q Consensus 282 --vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 358 (774)
++|||||||.. ....+..++.++.++|++||+||||+|..... .++..+++|+|||++
T Consensus 125 ~~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------------- 185 (279)
T 3f7m_A 125 PRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD--------------- 185 (279)
T ss_dssp TTEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC---------------
T ss_pred CCCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC---------------
Confidence 89999999974 45678888889999999999999999976443 467788999999732
Q ss_pred EEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC
Q 046220 359 LSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 3f7m_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCce
Q 046220 439 RQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDI 518 (774)
Q Consensus 439 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 518 (774)
..+.++.||++||.. ||+|||++|
T Consensus 186 ------------------------------------------------~~~~~~~~S~~g~~~--------di~ApG~~i 209 (279)
T 3f7m_A 186 ------------------------------------------------SNDVRSTFSNYGRVV--------DIFAPGTSI 209 (279)
T ss_dssp ------------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSE
T ss_pred ------------------------------------------------CCCCCCCCCCCCCCC--------eEEECCCCe
Confidence 224678999999965 999999999
Q ss_pred EeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccc
Q 046220 519 LGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585 (774)
Q Consensus 519 ~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~ 585 (774)
+++++. +.|..++|||||||+|||++|||+|++|. ++++||++|++||++..
T Consensus 210 ~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 210 TSTWIG--------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp EEECGG--------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred EeecCC--------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 999876 68999999999999999999999999999 99999999999999753
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-43 Score=407.58 Aligned_cols=317 Identities=19% Similarity=0.148 Sum_probs=200.2
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|.++++|+||+|||||||||++||||.++ ...+.++|..+.
T Consensus 60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n--------------------------~~~~~~~~~~~~---------- 103 (600)
T 3hjr_A 60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN--------------------------VRPGSKNVVTGS---------- 103 (600)
T ss_dssp HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG--------------------------BCSCCBCTTTSS----------
T ss_pred HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc--------------------------cccCcceeecCC----------
Confidence 45899999999999999999999999999753 011223333321
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHH-HHHHhCCCc
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGM-DQAIADGVD 283 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai-~~a~~~gvd 283 (774)
.++.+..|.+||||||||||||.. ++. | +.||||+|+|+.+|++++.+. +..++++.++ +++..++++
T Consensus 104 ~dp~p~~~~~gHGThVAGiIAa~~-n~~---g-----~~GVAp~A~l~~~rvl~~~~~--~~~~~~~~a~~~~~~~~~~~ 172 (600)
T 3hjr_A 104 DDPTPTDPDTAHGTSVSGIIAAVD-NAI---G-----TKGIAPRAQLQGFNLLDDNSQ--QLQKDWLYALGDSNASRDNR 172 (600)
T ss_dssp SCCCCCSTTCCHHHHHHHHHHCCS-SSS---S-----CCCSSTTCEEEEECTTSTTCC--CCHHHHHHHTTSSHHHHTCS
T ss_pred CCCCCCCCCCChHHHHHHHHhEeC-CCC---C-----cEEeCCCCEEEEEEeecCCCC--ccHHHHHHHhhhhhhhcCCC
Confidence 111223457899999999999863 221 2 479999999999999988775 7778887666 677788999
Q ss_pred EEEECcCCCCC-CCCCcH-----HHHHHHH--HHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeC
Q 046220 284 VMSLSLGFPET-TFDENP-----IAIGAFA--ALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLG 355 (774)
Q Consensus 284 VIn~SlG~~~~-~~~~~~-----~~~a~~~--a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 355 (774)
|||+|||.... +...+. +..++.. ...+|+++|+||||.+....... .. +. ..+
T Consensus 173 I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~-----~~-~~------------~~g 234 (600)
T 3hjr_A 173 VFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG-----YV-LN------------RTG 234 (600)
T ss_dssp EEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT-----EE-EE------------EES
T ss_pred EEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc-----cc-cc------------cCC
Confidence 99999997532 222222 1222212 23579999999999874211000 00 00 000
Q ss_pred CceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEe
Q 046220 356 NEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIIS 435 (774)
Q Consensus 356 ~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~ 435 (774)
++.. ...+.|... .+......|.|.
T Consensus 235 ~~~~-------------------------~~~~~~~~d--~~~~~~~~IsVg---------------------------- 259 (600)
T 3hjr_A 235 NGPK-------------------------LPFENSNLD--PSNSNFWNLVVS---------------------------- 259 (600)
T ss_dssp SCCC-------------------------CCSSBTTSS--GGGGSSSEEEEE----------------------------
T ss_pred CCCC-------------------------CCccccccc--CccccCcceEEe----------------------------
Confidence 0000 000011000 001111122222
Q ss_pred cCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCC
Q 046220 436 ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPG 515 (774)
Q Consensus 436 n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 515 (774)
.....+.++.||++|+.. +++|||
T Consensus 260 ------------------------------------------------A~~~~g~~a~yS~~G~~v--------~~~apg 283 (600)
T 3hjr_A 260 ------------------------------------------------ALNADGVRSSYSSVGSNI--------FLSATG 283 (600)
T ss_dssp ------------------------------------------------EECTTSSBCTTCCBCTTC--------CEEEEC
T ss_pred ------------------------------------------------eecCCCCEeecccCCcce--------eeccCC
Confidence 123457889999999987 889998
Q ss_pred CceE--------eecCCCCCCc-------------cccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHH
Q 046220 516 VDIL--------GAWVPNRPIA-------------TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIR 574 (774)
Q Consensus 516 ~~I~--------sa~~~~~~~~-------------~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik 574 (774)
.++. +..++..... ........ ..|..++|||||||||||++|||+|+||+||++|||
T Consensus 284 ~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~ 362 (600)
T 3hjr_A 284 GEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASC-DYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLR 362 (600)
T ss_dssp CSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTC-CEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHH
T ss_pred CCCCCCCcceeeecCCCccccccccCCccccccccccccCCCC-CceeccccccccchhHHHHHHHHHHHCCCCCHHHHH
Confidence 7632 2222111000 00001111 468899999999999999999999999999999999
Q ss_pred HHHHcccccccccccccccc-------------------CCCccCCCcccCCCccCCCCCCCC
Q 046220 575 SAMMTTADVLDNAYDMIADI-------------------STGVAGTPLDFGAGHINPNKAMDP 618 (774)
Q Consensus 575 ~~L~~TA~~~~~~g~~~~~~-------------------~~~~~~~~~~~G~G~vn~~~A~~~ 618 (774)
++|++||++++....|.... ......-...||||+||+.+|++.
T Consensus 363 ~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~ 425 (600)
T 3hjr_A 363 DLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALEL 425 (600)
T ss_dssp HHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred HHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHH
Confidence 99999999998665542210 001111245789999999998863
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-25 Score=254.19 Aligned_cols=96 Identities=24% Similarity=0.391 Sum_probs=77.3
Q ss_pred eeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh---CCCcEEEECcCCCCCCC---CCcHHHHHHHHHHcCCcEE
Q 046220 242 AIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA---DGVDVMSLSLGFPETTF---DENPIAIGAFAALKKGIFV 315 (774)
Q Consensus 242 ~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~---~gvdVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~v 315 (774)
+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||.....+ +...+..++.+|..+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~-------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP-------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHCTTSEEEEEECC-------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhccCCCCeEEEEEcC-------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEE
Confidence 5899999999999972 346789999999998 79999999999864322 1235566677788899999
Q ss_pred EEccCCCCCCC--------CCccCCCCceEEeccccc
Q 046220 316 ACSAGNSGPRP--------YSIENGAPWITTVGAGTV 344 (774)
Q Consensus 316 V~AAGN~G~~~--------~~~~~~~p~vitVgA~~~ 344 (774)
|+||||+|... ..+++.+|++++||+++.
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999999643 356678999999999754
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-22 Score=215.63 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=80.2
Q ss_pred eeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-CCCcEEEECcCCCCC----CCCCcHHHHHHHHHHcCCcEEEE
Q 046220 243 IGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-DGVDVMSLSLGFPET----TFDENPIAIGAFAALKKGIFVAC 317 (774)
Q Consensus 243 ~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-~gvdVIn~SlG~~~~----~~~~~~~~~a~~~a~~~Gi~vV~ 317 (774)
..+||+++++.|++.+..+ ++.++++++|+||++ ++++|||||||.... ..+.+.+..++.+|..+||+||+
T Consensus 90 g~~aP~a~~~~~~~~~~~~---~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~ 166 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSA---SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSV 166 (372)
T ss_dssp HHTTSCEEEEEEEEECTTS---STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred hhcCCCCcEEEEEeCCCCC---cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4578999999999987655 678899999999998 899999999998531 11234566777788889999999
Q ss_pred ccCCCCCCCC-------------CccCCCCceEEeccccc
Q 046220 318 SAGNSGPRPY-------------SIENGAPWITTVGAGTV 344 (774)
Q Consensus 318 AAGN~G~~~~-------------~~~~~~p~vitVgA~~~ 344 (774)
||||+|...+ ..++.+|++++||+++.
T Consensus 167 AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 167 SSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp ECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred EECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 9999997532 45678999999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-10 Score=102.64 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=67.5
Q ss_pred CCCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEecee
Q 046220 28 GDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETF 107 (774)
Q Consensus 28 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~ 107 (774)
..+++|||+|++...+.....|++|+.+++.+.. . +.+++|+|++.|+||+++++++++++|+++|+|.+|+||+.
T Consensus 35 ~ip~~YIV~lk~~~~~~~~~~h~~~l~s~~~~~~-~---~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~ 110 (114)
T 2w2n_P 35 RLPGTYVVVLKEETHLSQSERTARRLQAQAARRG-Y---LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 110 (114)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT-C---CCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CCCCcEEEEECCCCCHHHHHHHHHHHHHHhhhcc-c---CCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence 3578999999987655455678889998887622 2 47999999999999999999999999999999999999998
Q ss_pred eec
Q 046220 108 GHL 110 (774)
Q Consensus 108 ~~~ 110 (774)
++.
T Consensus 111 v~~ 113 (114)
T 2w2n_P 111 VFA 113 (114)
T ss_dssp EEE
T ss_pred Eec
Confidence 864
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=123.30 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHh--CCCcEEEECcCCCCCCC---CCcHHHHHHHHHHcCCcEEEEccCCCCCCC----------CCccCC
Q 046220 268 VDVLAGMDQAIA--DGVDVMSLSLGFPETTF---DENPIAIGAFAALKKGIFVACSAGNSGPRP----------YSIENG 332 (774)
Q Consensus 268 ~di~~ai~~a~~--~gvdVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----------~~~~~~ 332 (774)
..++..+++... +-++|||+|||...... +...+...+..+..+||.|++|+||+|..+ ...++.
T Consensus 283 e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD~G~~~~~~~~~~~~~~~~Pas 362 (544)
T 3edy_A 283 EPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPAS 362 (544)
T ss_dssp CHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCSSTTBCEEETTEEECCCEETTT
T ss_pred ccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCCCCccccCCCCCccccCCCcCC
Confidence 344554444432 46899999999864322 223445556678889999999999999753 246678
Q ss_pred CCceEEeccccc
Q 046220 333 APWITTVGAGTV 344 (774)
Q Consensus 333 ~p~vitVgA~~~ 344 (774)
+|||++||+++.
T Consensus 363 ~P~VtaVGgT~l 374 (544)
T 3edy_A 363 SPYVTTVGGTSF 374 (544)
T ss_dssp CTTSEEEEEEEE
T ss_pred CCcEEEEeeeec
Confidence 999999999764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.88 E-value=7.3e-09 Score=86.81 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEecee
Q 046220 28 GDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETF 107 (774)
Q Consensus 28 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~ 107 (774)
..+++|||+||++..... ..+++++.. +.++.++|++ |+||+++++++++++|+++|+|.+||||+.
T Consensus 6 ~i~~~YIV~~k~~~~~~~------~~~~~~~~~------g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~ 72 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKSCA------KKEDVISEK------GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKL 72 (80)
T ss_dssp --CCEEEEEECTTCCSHH------HHHHHHHTT------TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred cCCCCEEEEECCCCChHH------HHHHHHHHc------CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence 357999999998765321 122333332 4689999998 999999999999999999999999999999
Q ss_pred eecccCC
Q 046220 108 GHLHTTH 114 (774)
Q Consensus 108 ~~~~~~~ 114 (774)
++++++.
T Consensus 73 v~~~tt~ 79 (80)
T 3cnq_P 73 YRALSAT 79 (80)
T ss_dssp EEECCC-
T ss_pred EEEeeec
Confidence 9987664
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-09 Score=94.81 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=61.4
Q ss_pred CCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEeceee
Q 046220 29 DRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFG 108 (774)
Q Consensus 29 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~ 108 (774)
.+++|||+||++........+.+++.+++++.. . +.+++|+|++.|+||+++++++++++|+++|+|.+|++++.+
T Consensus 46 Ip~~YIV~~K~~~~~~~~~~~~~~l~~~~~~r~-~---g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v 121 (124)
T 2qtw_A 46 LPGTYVVVLKEETHLSQSERTARRLQAQAARRG-Y---LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 121 (124)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT-C---CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHhhcc-c---CCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceE
Confidence 578999999987654433444445554433311 1 468999999999999999999999999999999999999988
Q ss_pred ec
Q 046220 109 HL 110 (774)
Q Consensus 109 ~~ 110 (774)
+.
T Consensus 122 ~a 123 (124)
T 2qtw_A 122 FA 123 (124)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.3e-08 Score=80.48 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=54.8
Q ss_pred CeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEec-cceeeEEEEeCHHHHHhhcCC--CCeEEEEecee
Q 046220 31 KTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYN-HVVDGFSAVLSQTHLKNLQKM--PGHHGTYLETF 107 (774)
Q Consensus 31 ~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~-~~~~g~s~~~~~~~~~~L~~~--p~V~~V~~~~~ 107 (774)
+.|||.||++........+.+++.. . +.++.+.|+ ..|+||++.++++++++|+++ |.|.+||+|+.
T Consensus 3 ~sYIV~lk~~~~~~~~~~~~~~~~~----~------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~ 72 (76)
T 1v5i_B 3 GKFIVIFKNDVSEDKIRETKDEVIA----E------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV 72 (76)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHH----H------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHh----h------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcE
Confidence 6899999987644333334344332 2 247889994 799999999999999999999 89999999998
Q ss_pred eec
Q 046220 108 GHL 110 (774)
Q Consensus 108 ~~~ 110 (774)
++.
T Consensus 73 v~~ 75 (76)
T 1v5i_B 73 AHA 75 (76)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=85.02 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=79.8
Q ss_pred ceEeEEEccCCCCcccccCCCCCCC-------CcccEEEEEEEeCCC-CchhHHHHHHHHhcCceEEEEecCC--CCCC-
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPR-------AVAGKYIFCAFDYKG-NITVSQQLEEVRRTRAAGAIISADS--RQNL- 442 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~-------~~~g~iv~~~~~~g~-~~~~~~~~~~~~~~Ga~g~i~~n~~--~~~~- 442 (774)
..-.+++.........|.+...... ..+++|+|+ +||. |.|.+ |..+++++||.++|+||+. +...
T Consensus 70 v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV--~RG~~CsF~~-Kv~nAq~aGA~avIIyNn~~~g~~~~ 146 (194)
T 3icu_A 70 VAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALI--QRGGGCTFAD-KIHLAYERGASGAVIFNFPGTRNEVI 146 (194)
T ss_dssp EEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEE--ESCTTCCHHH-HHHHHHHTTCSEEEEECCTTCTTCCC
T ss_pred cEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEE--ECCCCcCHHH-HHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 3445566544446789987654221 257899999 9999 99999 9999999999999999973 2221
Q ss_pred -C--CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEece
Q 046220 443 -F--PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQI 480 (774)
Q Consensus 443 -~--~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 480 (774)
+ .+...+|+++|+..+|+.|++++.++...+++|.+..
T Consensus 147 ~m~~~~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 147 PMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CCCCTTCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred eecCCCCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 1 2235799999999999999999999988888777643
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00017 Score=57.28 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=50.1
Q ss_pred CeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEeceeeec
Q 046220 31 KTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGHL 110 (774)
Q Consensus 31 ~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~~~ 110 (774)
.+|||.|+++... ...++.. +.++.++|. .++++++.++++.+++|+++|+|++|++|...+.
T Consensus 2 ~~~IV~f~~~~~~----------~~~i~~~------gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 2 IRVIVSVDKAKFN----------PHEVLGI------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp EEEEEEECGGGCC----------GGGGGGG------TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred eeEEEEEcCcchh----------HHHHHHC------CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 4899999865211 1123322 578999998 7999999999999999999999999999987753
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.058 Score=59.36 Aligned_cols=85 Identities=8% Similarity=0.045 Sum_probs=63.7
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCC---C-CCCCc
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNL---F-PGDFD 448 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~---~-~~~~~ 448 (774)
.+-+++|.+.... ..+...+++|||+|+ .++.|.+.. |..+++++||.|+|++++ .+... . .....
T Consensus 93 v~a~lv~~~~G~~------~D~~~~dv~GkIvlv--~~g~~~~~~-k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~ 163 (421)
T 2ek8_A 93 VTAELVYVGLGTT------ADVAGKDLNGKIALI--QRGNISFAD-KVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASF 163 (421)
T ss_dssp EEEEEEECTTCCT------TTTTTSCCTTSEEEE--ECCSSCHHH-HHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTC
T ss_pred cceEEEECCCCCh------hhcCCCCcCceEEEE--eCCCCCHHH-HHHHHHHCCCeEEEEEeCCCcccccccCCCCCCC
Confidence 3456777543311 122234799999999 999999988 999999999999999998 32211 1 13567
Q ss_pred ccEEEEccccHHHHHHHHH
Q 046220 449 MPFVTVNLNNGELVKKYII 467 (774)
Q Consensus 449 ~p~~~i~~~~g~~l~~~~~ 467 (774)
+|.+.++.+++..|+.++.
T Consensus 164 IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 164 VAAVGITKQEGDALAANLR 182 (421)
T ss_dssp CEEEEECHHHHHHHHHHHH
T ss_pred ccEEEeCHHHHHHHHHHhh
Confidence 8999999999999999984
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.1 Score=46.61 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=54.4
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEEEeeC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVN 755 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 755 (774)
.+.+.+.+|+|+|+.+..|+..... -++|+|..-.+ ++|++..++|++.+.. .+.+.+.|... .+
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~---------~g~~~~~l~v~-~~ 105 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQS---------VGDHSGRLIVC-YD 105 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSS---------SBCCCCBCEEE-ES
T ss_pred CeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCC---------CccEEEEEEEE-EC
Confidence 5778889999999988888877643 37789999999 7999999999999886 23455555552 24
Q ss_pred CeeEEEEEE
Q 046220 756 GKHQVRSPI 764 (774)
Q Consensus 756 ~~~~v~~P~ 764 (774)
+...+.+++
T Consensus 106 ~g~~~~v~L 114 (122)
T 2ys4_A 106 TGEKVFVSL 114 (122)
T ss_dssp SSCEECCEE
T ss_pred CCCEEEEEE
Confidence 334444443
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.15 Score=56.38 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=68.7
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCc---------hhHHH----HHHHHhcCceEEEEecC-C
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNI---------TVSQQ----LEEVRRTRAAGAIISAD-S 438 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~---------~~~~~----~~~~~~~Ga~g~i~~n~-~ 438 (774)
..+-++++... ...|.. ..+.+++|||||+ .++.|. +.. | ..++.++||+|+|++|. .
T Consensus 105 ~vta~lV~v~~---~~~~~~--~~~~dvkGKIVlv--~~~~~~~~~~~~y~~~~~-kr~~~a~~A~~aGA~avIi~~~~~ 176 (444)
T 3iib_A 105 GLSATIVRFDT---LQDLQN--AEAGSLNDKIAFI--DAKTERHRDGKGYGQTAS-GRSRGAVAAAEKGAVGIIIRSIGT 176 (444)
T ss_dssp CEEEEEEEESS---HHHHHT--SCTTTTTTCEEEE--CCCCCCCTTCHHHHHHHH-HHHHHHHHHHHTTCSEEEEECSCS
T ss_pred CeEEEEEecCC---HHHHhh--ccccccCccEEEE--eCCCCCCcccccccchhh-hhhhHHHHHHHCCCeEEEEEccCC
Confidence 45667887542 222322 2346899999999 998874 233 3 35799999999999986 2
Q ss_pred CCC---------CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEece
Q 046220 439 RQN---------LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQI 480 (774)
Q Consensus 439 ~~~---------~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 480 (774)
+.. .......+|++.|+.+++..|+..+..+...++.+....
T Consensus 177 ~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 177 DHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp CCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred cccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 110 011245799999999999999999987766666655543
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=93.87 E-value=0.068 Score=62.37 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=64.2
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC------CC------
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS------RQ------ 440 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~------~~------ 440 (774)
..+-++||.+.....+...-......+++|||+|+ .+|.|.+.. |..+|+++||+|+|+||++ |.
T Consensus 126 ~v~g~lV~v~~G~~~Df~~L~~~~~~~v~GkIvlv--~~G~~~~~~-Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~ 202 (707)
T 3fed_A 126 MPEGDLVYVNYARTEDFFKLEREMGINCTGKIVIA--RYGKIFRGN-KVKNAMLAGAIGIILYSDPADYFAPEVQPYPKG 202 (707)
T ss_dssp CCEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEE--ECCSSCHHH-HHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTS
T ss_pred ceEEEEEEecCCchhhHHHHHhccCCCCCCeEEEE--ECCCCCHhH-HHHHHHHCCCEEEEEEcCchhccccccccCCCC
Confidence 34567888654332222210000134799999999 999999988 9999999999999999861 10
Q ss_pred ---------------------CCCC-----------------CCCcccEEEEccccHHHHHHHHH
Q 046220 441 ---------------------NLFP-----------------GDFDMPFVTVNLNNGELVKKYII 467 (774)
Q Consensus 441 ---------------------~~~~-----------------~~~~~p~~~i~~~~g~~l~~~~~ 467 (774)
.+.+ ....||++.|+..++..|+..+.
T Consensus 203 ~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~ 267 (707)
T 3fed_A 203 WNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLG 267 (707)
T ss_dssp SBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBC
T ss_pred ccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhc
Confidence 0000 12468999999999999998764
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.11 Score=60.04 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=61.9
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCC-CC-----------
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR-QN----------- 441 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~-~~----------- 441 (774)
.+-++||.+.....+ . ..+. -+++|||+|+ .+|.|.+.. |..+|+++||+|+|++++.. ..
T Consensus 108 v~g~lV~vg~G~~~D-~--~~l~-vdv~GkIvlv--~~g~~~~~~-K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~ 180 (640)
T 3kas_A 108 VTGKLVHANFGTKKD-F--EDLY-TPVNGSIVIV--RAGKITFAE-KVANAESLNAIGVLIYMDQTKFPIVNAELSFFGH 180 (640)
T ss_dssp EEECEEECTTCCHHH-H--HTCS-SCCTTSEEEE--ESCSSCHHH-HHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEE
T ss_pred eEEEEEEecCCChhh-H--HHhh-cccCCcEEEE--ecCCCCHHH-HHHHHHHCCCeEEEEEeccccccccccccccccc
Confidence 356788865432211 1 1111 4799999999 999999988 99999999999999998721 10
Q ss_pred --------CC----------------CCCCcccEEEEccccHHHHHHHHH
Q 046220 442 --------LF----------------PGDFDMPFVTVNLNNGELVKKYII 467 (774)
Q Consensus 442 --------~~----------------~~~~~~p~~~i~~~~g~~l~~~~~ 467 (774)
.. .....+|+..|+.+++..|+..+.
T Consensus 181 ~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 181 AHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 00 012368999999999999987653
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.18 E-value=0.22 Score=61.39 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=22.6
Q ss_pred CCCCCccEEEEEcCCCCCCCCCCc
Q 046220 131 AGFGSDVIVGVIDSGVWPESPSFK 154 (774)
Q Consensus 131 ~~~G~gVvVgVIDtGid~~Hp~f~ 154 (774)
.+.|+||+|||+|||||+.+|.|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 578999999999999999999996
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.57 E-value=3.5 Score=37.47 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=63.5
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECC----CCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEE
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAP----AGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTW 751 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p----~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~ 751 (774)
...+.+.|++|.|.-+.+|++..... ..--++|+|..-++ ++|++.+++|++........+-.....-++--|++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 45677889999999999999985321 11236778999999 79999999999987542000000012345566777
Q ss_pred EeeCCeeEEEEEEEEEEEcc
Q 046220 752 FEVNGKHQVRSPIVSAFSVS 771 (774)
Q Consensus 752 ~~~~~~~~v~~P~~~~~~~~ 771 (774)
. ..+.+...+|+...|.-|
T Consensus 122 ~-Ve~G~d~fI~v~g~~~ps 140 (140)
T 3qbt_B 122 H-LDRGKDYFLTISGNYLPS 140 (140)
T ss_dssp E-ETTSCEEEEEEEEEECCC
T ss_pred E-eecCCcEEEEEeccccCC
Confidence 3 456677789998877543
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.86 E-value=2.8 Score=36.16 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=49.5
Q ss_pred ceEEEEEEEEecCCCceEEEEEEEC-CCCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEEE
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKA-PAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWF 752 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~-p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~ 752 (774)
...+.+.+++|.|+.+..|+..... +.+...+++|..-.+ ++|++++++|++.+.. -+.+.-.|++.
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~---------~g~f~~~i~v~ 93 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII---------LGNFEEEFLVN 93 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC---------CEEEEEEECEE
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC---------cceEEEEEEEE
Confidence 4577789999999999999984311 122347789999999 7899999999999865 23444557763
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=0.43 Score=52.63 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=26.8
Q ss_pred cCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCC
Q 046220 486 KPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVP 524 (774)
Q Consensus 486 ~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 524 (774)
...+.++.||++||.. ||+|||++|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 4457899999999865 999999999999875
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=85.31 E-value=4.2 Score=35.72 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=45.8
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLG 733 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~ 733 (774)
..-..+..+.|....+.+|.+++...+|+.+. .+..+.+ +++|..++.|.|..+..
T Consensus 31 I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 31 VENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEEChH
Confidence 34577789999999999999999988776653 3556888 79999999999998763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 774 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 5e-41 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-15 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-06 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 3e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-04 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-10 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 0.003 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-10 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 9e-06 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-09 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 8e-09 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 0.001 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 4e-08 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 6e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 5e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-05 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-04 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 1e-04 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 0.003 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 154 bits (388), Expect = 5e-41
Identities = 89/490 (18%), Positives = 160/490 (32%), Gaps = 90/490 (18%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
+ + +IDSG + G + G
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNA--------------------------NNVTGTNNSGTG 54
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
++ P + HGTH + TIA AN G GV P +
Sbjct: 55 ------------NWYQPGNNNAHGTHVAGTIAA----IANNEGVV-----GVMPNQNANI 93
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADG-VDVMSLSLGFPETTFDENPIAIGAFAALKKG 312
+ + +N+ + ++A +D + G +V+++SLG +T E + G
Sbjct: 94 HIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHY---NNG 150
Query: 313 IFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLF 372
+ + +AGN+G YS + +V A + + AA S V +
Sbjct: 151 VLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAA--------FSQYTDQV---EIS 199
Query: 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432
E I + + + + + + T A
Sbjct: 200 GPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAE 259
Query: 433 IISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVA 492
+ F N+ N + + + N ++ I +
Sbjct: 260 CTVNGT-----------SFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIV 308
Query: 493 KFSSRGPSLRSPWIL--KPDILAPGVDILGAW---VPNRPIATIRDIGKLLTEYALESGT 547
+S P L++P+++ DI P V + A + + + + +Y +GT
Sbjct: 309 YSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGT 368
Query: 548 SMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGA 607
SM+ PH +G+ATL+ + H E S++ +R+A+ TAD L VAG G
Sbjct: 369 SMATPHVSGVATLVWSYHPECSASQVRAALNATADDL------------SVAGRDNQTGY 416
Query: 608 GHINPNKAMD 617
G IN A
Sbjct: 417 GMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 77.4 bits (189), Expect = 3e-15
Identities = 43/294 (14%), Positives = 77/294 (26%), Gaps = 27/294 (9%)
Query: 495 SSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTE----YALESGTSMS 550
+ + S + APGV IL I + Y GTSM+
Sbjct: 324 GTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMA 383
Query: 551 CPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHI 610
PH G+ +L IR + TA G D G G +
Sbjct: 384 APHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDF------------NGNGWDHDTGYGLV 431
Query: 611 NPNKAM-----DPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPS 665
+ A+ G V + +V + + + ++ + D
Sbjct: 432 KLDAALQGPLPTQGGVEEFQVV-VTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARF 490
Query: 666 FIIILNN-----TNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHS 720
I + + Y ++ + +S D
Sbjct: 491 PHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPDATQL 550
Query: 721 KAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSAFSVSNGQ 774
FN T+ + ++S ++ V G+ S+ +GQ
Sbjct: 551 NVNFNSTLQVKFSTNLSTLKDPQFVVVDPLLRGVYGRVAYARNQTYDLSLLSGQ 604
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 49.3 bits (116), Expect = 1e-06
Identities = 37/212 (17%), Positives = 59/212 (27%), Gaps = 50/212 (23%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
G+++IV V+D+GV P + + + +
Sbjct: 153 GTNIIVAVVDTGVDGTHPDLEGQVIA--------------GYRPAFDE------------ 186
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
GTH + TIA +GVAP A+I
Sbjct: 187 ---------ELPAGTDSSYGGSAGTHVAGTIAAK---------KDGKGIVGVAPGAKIMP 228
Query: 254 YKIAFYNDTLKA----AAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAAL 309
I + V AG+ A G VM+ S G ++ A
Sbjct: 229 IVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAME-- 286
Query: 310 KKGIFVACSAGNSGPRPYSIENGAPWITTVGA 341
+ V + N+ + G P + V A
Sbjct: 287 HGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAA 318
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 62.7 bits (151), Expect = 3e-11
Identities = 44/220 (20%), Positives = 74/220 (33%), Gaps = 45/220 (20%)
Query: 404 YIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVK 463
Y + G+ + S + + G + S V G +V
Sbjct: 90 YAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVV 149
Query: 464 KYIINADNATVSIKFQ--------ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPG 515
N+ N+ + I + + A FSS G + +++APG
Sbjct: 150 AAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGA--------ELEVMAPG 201
Query: 516 VDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRS 575
+ + N YA +GTSM+ PH AG A L+ + H S++ +R+
Sbjct: 202 AGVYSTYPTNT--------------YATLNGTSMASPHVAGAAALILSKHPNLSASQVRN 247
Query: 576 AMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKA 615
+ +TA L G+ +G G IN A
Sbjct: 248 RLSSTATYL---------------GSSFYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 42.2 bits (98), Expect = 1e-04
Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 54/232 (23%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
+ G++V V V+D+G+ P +G
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHPDLNV-----------------------------VG 46
Query: 187 ARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVA 246
SF G D GHGTH +GVA
Sbjct: 47 GASFVAG-------------EAYNTDGNGHGTHV---------AGTVAALDNTTGVLGVA 84
Query: 247 PMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAF 306
P + K+ N + + +++G++ A +G+DV+++SLG + A+
Sbjct: 85 PSVSLYAVKV--LNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAY 142
Query: 307 AALKKGIFVACSAGNSG-PRPYSIENGAPWITTVGAGTVDREFAARVTLGNE 357
A + A ++GNSG + VGA + A+ ++G E
Sbjct: 143 ARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAE 194
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 60.7 bits (146), Expect = 1e-10
Identities = 50/220 (22%), Positives = 80/220 (36%), Gaps = 41/220 (18%)
Query: 401 AGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGE 460
A Y G+ +VS + + G ++ S + P V + G
Sbjct: 86 AELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGV 145
Query: 461 LVKKYIINADNATVS----IKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV 516
LV N+ ++S + + T + A FS G DI+APGV
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAG--------LDIVAPGV 197
Query: 517 DILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSA 576
++ + + YA +GTSM+ PH AG A L+K + WS+ IR+
Sbjct: 198 NVQSTYPGST--------------YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 577 MMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAM 616
+ TA L G+ +G+G +N A
Sbjct: 244 LKNTATSL---------------GSTNLYGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 37.6 bits (86), Expect = 0.003
Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 57/230 (24%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
GS V V V+D+G+ ++H + + G
Sbjct: 16 AHNRGLTGSGVKVAVLDTGI------------------------------STHPDLNIRG 45
Query: 187 ARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVA 246
SF G S +D GHGTH + TIA
Sbjct: 46 GASFVPG-------------EPSTQDGNGHGTHVAGTIAALNNSIGVLGVA--------- 83
Query: 247 PMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAF 306
P A + K+ + + + + G++ A +G+ V +LSLG P +
Sbjct: 84 PSAELYAVKVLGASGS--GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV---N 138
Query: 307 AALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGN 356
+A +G+ V ++GNSG S VGA + A+ G
Sbjct: 139 SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGA 188
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 59.9 bits (144), Expect = 2e-10
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 37/138 (26%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599
Y +GTSM+ PH AG A L+ + H W++ +RS++ T L
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL--------------- 257
Query: 600 GTPLDFGAGHINPNKAMD 617
G +G G IN A
Sbjct: 258 GDSFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 46.0 bits (108), Expect = 9e-06
Identities = 50/232 (21%), Positives = 76/232 (32%), Gaps = 53/232 (22%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L GS+V V VIDSG+ P K G G S
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG--------------GASMVPS-------- 53
Query: 187 ARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVA 246
+ + +D HGTH V +GVA
Sbjct: 54 -------------------ETNPFQDNNSHGTH---------VAGTVAALNNSIGVLGVA 85
Query: 247 PMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAF 306
P A + K+ ++ G++ AIA+ +DV+++SLG P + A
Sbjct: 86 PSASLYAVKV--LGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAV 143
Query: 307 AALKKGIFVACSAGNSGP-RPYSIENGAPWITTVGAGTVDREFAARVTLGNE 357
A+ + A + G SG P + VGA + A+ ++G E
Sbjct: 144 ASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPE 195
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 508 KPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHE 567
+I APG + W Y SGTSM+ PH +G+A + A +
Sbjct: 224 DIEISAPGSSVYSTWYNGG--------------YNTISGTSMATPHVSGLAAKIWAENPS 269
Query: 568 WSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHIN 611
S+ +RS + A +D A I G G G
Sbjct: 270 LSNTQLRSNLQERAKSVDIKGGYGAAI-----GDDYASGFGFAR 308
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 55.7 bits (132), Expect = 8e-09
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 19/121 (15%)
Query: 502 RSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
+KPD++APG IL A P ++ ++YA GTSM+ P AG L
Sbjct: 211 TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHD--SKYAYMGGTSMATPIVAGNVAQL 268
Query: 562 -----KATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAM 616
K + +++A++ A + Y + G G + +K++
Sbjct: 269 REHFVKNRGITPKPSLLKAALIAGAADIGLGYP------------NGNQGWGRVTLDKSL 316
Query: 617 D 617
+
Sbjct: 317 N 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 39.5 bits (90), Expect = 0.001
Identities = 44/284 (15%), Positives = 74/284 (26%), Gaps = 47/284 (16%)
Query: 127 LWPAAGF-GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLI 185
+ G G IV V D+G+ E +RG K+
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSMH------EAFRG---------------KIT 51
Query: 186 GARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGV 245
+ ++ D GHGTH + ++ G+ N
Sbjct: 52 ALYALG--------------RTNNANDTNGHGTHVAGSVLGNGSTNKGM----------- 86
Query: 246 APMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGA 305
AP A + I L ++ QA + G + + S G
Sbjct: 87 APQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVD 146
Query: 306 FAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKS 365
K + + +AGN GP +I + G + + + + V S
Sbjct: 147 DYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFS 206
Query: 366 VYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAF 409
+P G + D A A+
Sbjct: 207 SRGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAY 250
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.6 bits (127), Expect = 4e-08
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 545 SGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLD 604
GTS + P AAG+ TLL + + ++ + +A L+ D S
Sbjct: 261 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320
Query: 605 FGAGHINPNKAMD 617
+G G I+ +K ++
Sbjct: 321 YGFGKIDAHKLIE 333
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.2 bits (126), Expect = 6e-08
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 545 SGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLD 604
+GTS S P AAGI L + + ++ ++ T+ D A G +
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSH-S 315
Query: 605 FGAGHINPNKAMD 617
+G G ++ +
Sbjct: 316 YGYGLLDAGAMVA 328
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 46.5 bits (109), Expect = 5e-06
Identities = 42/229 (18%), Positives = 59/229 (25%), Gaps = 53/229 (23%)
Query: 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGA 187
W S + VID+GV P +
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYD------------------ 65
Query: 188 RSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP 247
P D HGTH + A G+AP
Sbjct: 66 ----------------------PMDLNNHGTHVAGIAAAETNNATGI--------AGMAP 95
Query: 248 MARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFA 307
RI + + D+ + A G +V++LSLG T A+
Sbjct: 96 NTRILAVRA--LDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAWN 153
Query: 308 ALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGN 356
KG V +AGN+G + VGA A+ G
Sbjct: 154 ---KGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGT 199
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 44.9 bits (105), Expect = 2e-05
Identities = 55/214 (25%), Positives = 79/214 (36%), Gaps = 42/214 (19%)
Query: 408 AFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYII 467
A D G+ T+S + + +GA + S V N G +V
Sbjct: 104 ALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAWNKGSVVVAAAG 163
Query: 468 NADNATVSIKFQ----ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV 523
N ++T I + ++A FS+ G D++APGVDI+
Sbjct: 164 NNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGT--------WVDVVAPGVDIVSTIT 215
Query: 524 PNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADV 583
NR YA SGTSM+ PH AG+A LL + ++ IR A+ TAD
Sbjct: 216 GNR--------------YAYMSGTSMASPHVAGLAALLASQG--RNNIEIRQAIEQTADK 259
Query: 584 LDNAYDMIADISTGVAGTPLDFGAGHINPNKAMD 617
+ GT F G IN A+
Sbjct: 260 IS--------------GTGTYFKYGRINSYNAVT 279
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 520 GAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMT 579
G+WV + + YA SGTSM+ PH AG+A LL + + IR+A+
Sbjct: 197 GSWVDVAAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGRSA--SNIRAAIEN 254
Query: 580 TADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMD 617
TAD + GT + G +N KA+
Sbjct: 255 TADKIS--------------GTGTYWAKGRVNAYKAVQ 278
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 545 SGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585
SGTSM+ PH AG+A L +++A R + TA+ D
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGD 260
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 38.0 bits (87), Expect = 0.003
Identities = 26/218 (11%), Positives = 51/218 (23%), Gaps = 55/218 (25%)
Query: 112 TTHTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEV 171
H P A ++ VG+I G ++
Sbjct: 5 KGHNPT--EFPTIYDASSAPT-AANTTVGIITIGGVSQTLQ------------------- 42
Query: 172 GVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQN 231
+ GL T + +
Sbjct: 43 -----------------DLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEWDLDSQ 85
Query: 232 ANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD-GVDVMSLSLG 290
+ +G A A + D + + +QA++D V+++SLG
Sbjct: 86 ---------SIVGSAGGAVQQLLFYM--ADQSASGNTGLTQAFNQAVSDNVAKVINVSLG 134
Query: 291 FPETTFDENPIAIGAFAALKK----GIFVACSAGNSGP 324
+ E + + G + S+G+ G
Sbjct: 135 WCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGV 172
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 774 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.95 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.8 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.58 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.22 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 95.6 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 94.28 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=8.2e-53 Score=492.98 Aligned_cols=367 Identities=22% Similarity=0.183 Sum_probs=264.0
Q ss_pred CCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHH----H--hhcCCCCeEEE
Q 046220 29 DRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHL----K--NLQKMPGHHGT 102 (774)
Q Consensus 29 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~----~--~L~~~p~V~~V 102 (774)
.+++|||+||+... .+.++++. +.++++.+. .++.+.++++...+ + ++.++|+|++|
T Consensus 30 ~~~~~iV~~k~~~~----------~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 92 (671)
T d1r6va_ 30 TEGKILVGYNDRSE----------VDKIVKAV------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYV 92 (671)
T ss_dssp CTTEEEEEESSHHH----------HHHHHHHH------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEE
T ss_pred CCCeEEEEECCccC----------HHHHHHhc------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEE
Confidence 57899999996432 22233333 246777776 56777777764322 2 33468999999
Q ss_pred EeceeeecccC----CC-----------------------CCccccccc--CCCCcCCCCCCccEEEEEcCCCCCCCCCC
Q 046220 103 YLETFGHLHTT----HT-----------------------PKFVGLKKH--AGLWPAAGFGSDVIVGVIDSGVWPESPSF 153 (774)
Q Consensus 103 ~~~~~~~~~~~----~s-----------------------~~~~g~~~~--~~~w~~~~~G~gVvVgVIDtGid~~Hp~f 153 (774)
+|+..+++... .. ...|+++.+ ..+|....+|+||+|||||||||++||+|
T Consensus 93 ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl 172 (671)
T d1r6va_ 93 EPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDL 172 (671)
T ss_dssp ECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGG
T ss_pred CcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhh
Confidence 99876554211 00 012444332 23333456899999999999999999999
Q ss_pred cCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCcc
Q 046220 154 KDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNAN 233 (774)
Q Consensus 154 ~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~ 233 (774)
.++ ++..+++..+.+. ....++.|..||||||||||||+.++.
T Consensus 173 ~~~---------------------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~VAGiiaa~~~~~-- 215 (671)
T d1r6va_ 173 EGQ---------------------------VIAGYRPAFDEEL--------PAGTDSSYGGSAGTHVAGTIAAKKDGK-- 215 (671)
T ss_dssp TTT---------------------------BCCEEEGGGTEEE--------CTTCBCCTTCSHHHHHHHHHHCCCSSS--
T ss_pred cCC---------------------------cccCccccccCCC--------CCCCcCcccCCCCccccceeeeecccc--
Confidence 753 1122222221110 111345678899999999999975321
Q ss_pred ccccccceeeeecCCceEEEEEEEeeC----CCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHH
Q 046220 234 YFGYAEGTAIGVAPMARIAMYKIAFYN----DTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAAL 309 (774)
Q Consensus 234 ~~G~~~g~~~GvAP~A~l~~~kv~~~~----g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~ 309 (774)
.+.||||+|+|+++|++++. +......+++++||+||+++|++|||||||+. .....+..++..+.
T Consensus 216 -------g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~---~~~~~~~~ai~~a~ 285 (671)
T d1r6va_ 216 -------GIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGW---GYSYTMKEAFDYAM 285 (671)
T ss_dssp -------SCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHHHHHHHHHHH
T ss_pred -------ceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEecccccc---cCChHHHHHHHHHH
Confidence 24899999999999999742 11125677899999999999999999999875 33456777888999
Q ss_pred cCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcc
Q 046220 310 KKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKE 388 (774)
Q Consensus 310 ~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 388 (774)
++|+++|+||||++... ...++..|++|+|||++.+.
T Consensus 286 ~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------------------ 323 (671)
T d1r6va_ 286 EHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------------------ 323 (671)
T ss_dssp HTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET------------------------------------------
T ss_pred hccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC------------------------------------------
Confidence 99999999999998754 46778899999999843110
Q ss_pred cccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHh
Q 046220 389 ICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIIN 468 (774)
Q Consensus 389 ~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 468 (774)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCcccc-----CCcccccccee
Q 046220 469 ADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIR-----DIGKLLTEYAL 543 (774)
Q Consensus 469 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~-----~~~~~~~~y~~ 543 (774)
....+++||+|||.+ ||+|||++|+++++......... ..... +.|..
T Consensus 324 ------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~-~~y~~ 376 (671)
T d1r6va_ 324 ------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG-GTYDY 376 (671)
T ss_dssp ------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS-CCEEE
T ss_pred ------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCC-Ceeee
Confidence 012568999999976 99999999999987543221110 00111 68999
Q ss_pred cccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCCCCe
Q 046220 544 ESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGL 620 (774)
Q Consensus 544 ~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~gl 620 (774)
++|||||||||||++|||+|++|+|++.|||++|++||++++. ...+..||||+||+.+|++..+
T Consensus 377 ~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG------------NGWDHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp EESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS------------SSCBTTTBTCBCCHHHHHHCCC
T ss_pred ecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------------CCCCCCcccChhCHHHHhhCcC
Confidence 9999999999999999999999999999999999999998743 3345689999999999997544
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=4.2e-49 Score=441.53 Aligned_cols=378 Identities=24% Similarity=0.276 Sum_probs=240.9
Q ss_pred cccccc--CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccc
Q 046220 119 VGLKKH--AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196 (774)
Q Consensus 119 ~g~~~~--~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~ 196 (774)
||+..+ +.+|+ .+|+||+|||||||||++||+|.++ ++..++|...
T Consensus 6 wg~~~i~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~--- 53 (435)
T d1v6ca_ 6 WGQTFVGATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT--- 53 (435)
T ss_dssp HHHHHTTGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS---
T ss_pred ccHhhcCcchhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC---
Confidence 454432 33555 4799999999999999999999753 2222222221
Q ss_pred cCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecC--CceEEEEEEEeeCCCCCCchHHHHHHH
Q 046220 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAP--MARIAMYKIAFYNDTLKAAAVDVLAGM 274 (774)
Q Consensus 197 ~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~g~~~~~~~di~~ai 274 (774)
.+...+.|++||||||||||||+..+. .+.|||| +++|+.+|++..... +...++++||
T Consensus 54 --------~~~~~~~d~~gHGThvAgiiag~~~~~---------g~~GvAp~~~~~l~~~~~~~~~~~--~~~~~~~~a~ 114 (435)
T d1v6ca_ 54 --------GNWYQPGNNNAHGTHVAGTIAAIANNE---------GVVGVMPNQNANIHIVKVFNEAGW--GYSSSLVAAI 114 (435)
T ss_dssp --------CCTTCCCSSCCHHHHHHHHHHCCCSSS---------BCCCSSCSSCSEEEEEECEETTEE--CCSSCHHHHH
T ss_pred --------CCCCCCCCCCCcHHHHHHHHhccCCCC---------ceEEEecccCceeeeeeccccccc--chhhhhhhHH
Confidence 122357789999999999999986321 1489999 899999999987654 6777899999
Q ss_pred HHHHh-CCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEE
Q 046220 275 DQAIA-DGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVT 353 (774)
Q Consensus 275 ~~a~~-~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~ 353 (774)
+++++ .|++|||+|||... ....+..++..+.++|+++|+||||+|+...++++.++++|+|||++.+........
T Consensus 115 ~~a~~~~~~~vin~S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~ 191 (435)
T d1v6ca_ 115 DTCVNSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQ 191 (435)
T ss_dssp HHHHHTTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSC
T ss_pred HHHhhcccceEEecccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccC
Confidence 99996 59999999999863 344566677788999999999999999999999999999999999876543211111
Q ss_pred eCCceE-EEeeeeecC-----------------CCCCCc---eEeEEEccCC-----C------Ccccc--cCCCCCCCC
Q 046220 354 LGNEEL-SVIGKSVYP-----------------ENLFVS---REPIYFGYGN-----R------SKEIC--EGNSTDPRA 399 (774)
Q Consensus 354 ~~~g~~-~~~g~~~~~-----------------~~~~~~---~~~l~~~~~~-----~------~~~~c--~~~~~~~~~ 399 (774)
.+.... ..+|..++. ..+... ...+...... . ....| ........+
T Consensus 192 ~g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (435)
T d1v6ca_ 192 YTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGN 271 (435)
T ss_dssp CCSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCC
T ss_pred CCCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccc
Confidence 111000 001111110 000000 0000000000 0 00000 001112234
Q ss_pred cccEEEEEEEeCCCC-----chhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEE
Q 046220 400 VAGKYIFCAFDYKGN-----ITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 400 ~~g~iv~~~~~~g~~-----~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
+.+++.++ .+... .... +.......++.+++.+
T Consensus 272 ~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------------------------------- 309 (435)
T d1v6ca_ 272 MANKICLV--ERVGNQGSSYPEIN-STKACKTAGAKGIIVY--------------------------------------- 309 (435)
T ss_dssp CTTEEEEE--ECCSCSSSSCTHHH-HHHHHHHTTCSEEEEE---------------------------------------
T ss_pred ccccccee--eccCCccccceeee-eceeecccCCcceEEe---------------------------------------
Confidence 45555555 33221 1222 3344444444444433
Q ss_pred EEEeceeEecccCCCccccccCCCCCCCC--CCcccCeeEeCCCceEeecCCCC----CCccccCCccccccceeccccc
Q 046220 475 SIKFQITILGTKPSPQVAKFSSRGPSLRS--PWILKPDILAPGVDILGAWVPNR----PIATIRDIGKLLTEYALESGTS 548 (774)
Q Consensus 475 ~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~--~~~~KPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~~y~~~sGTS 548 (774)
+++.+|.... ....||||.+||..|.++..... ........... ..|..|||||
T Consensus 310 -------------------~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~-~~y~~~sGTS 369 (435)
T d1v6ca_ 310 -------------------SNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGN-QDYEYYNGTS 369 (435)
T ss_dssp -------------------CCSSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEE-ESEEEECSHH
T ss_pred -------------------ccCCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCC-CCeeEEccHH
Confidence 2333332221 14678999999998875432100 00000001111 6799999999
Q ss_pred chhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCCCCeeeeCCchh
Q 046220 549 MSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQD 628 (774)
Q Consensus 549 mAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~glv~~~~~~~ 628 (774)
||||||||++|||+|+||+|+++|||++||+||+++. .++++++||+|+||+.+|++
T Consensus 370 MAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~------------~~~~~~~~G~G~vn~~~A~~----------- 426 (435)
T d1v6ca_ 370 MATPHVSGVATLVWSYHPECSASQVRAALNATADDLS------------VAGRDNQTGYGMINAVAAKA----------- 426 (435)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCS------------SSSCBTTTBTCBCCHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccC------------CCCCCCCcccceecHHHHHH-----------
Confidence 9999999999999999999999999999999999873 34567799999999999854
Q ss_pred hhhhhhh
Q 046220 629 YINYLCA 635 (774)
Q Consensus 629 ~~~~l~~ 635 (774)
|+...|.
T Consensus 427 ~l~~~~~ 433 (435)
T d1v6ca_ 427 YLDESCT 433 (435)
T ss_dssp HHHHCTT
T ss_pred HHHhcCC
Confidence 7776665
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=3.3e-48 Score=408.12 Aligned_cols=260 Identities=31% Similarity=0.406 Sum_probs=210.4
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
++.+|+++.+|+||+|||||||||++||+|.++ ++..++|...
T Consensus 20 ~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~~---------- 62 (280)
T d1dbia_ 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN---------- 62 (280)
T ss_dssp HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT----------
T ss_pred HHHHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccCC----------
Confidence 356999999999999999999999999999742 3333444322
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
...+.|.++|||||||+|+|...+. +.+.||||+|+|+.+|+++..+. +...++++||+|++++|++
T Consensus 63 ---~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~g~~ 129 (280)
T d1dbia_ 63 ---DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGS--GTLSDIADAIIYAADSGAE 129 (280)
T ss_dssp ---BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSC--CCHHHHHHHHHHHHHTTCS
T ss_pred ---CCccccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCC--cCHHHHHHHHHHHHHcCCc
Confidence 1346788999999999999876432 22589999999999999988776 8899999999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEee
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g 363 (774)
|||||||... ..+....+...+.++|+++|+||||+|......++..+++|+|||.+
T Consensus 130 iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~-------------------- 186 (280)
T d1dbia_ 130 VINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD-------------------- 186 (280)
T ss_dssp EEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC--------------------
T ss_pred Eeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec--------------------
Confidence 9999999853 33455667778899999999999999988777888889999999732
Q ss_pred eeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCC
Q 046220 364 KSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLF 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 443 (774)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecC
Q 046220 444 PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV 523 (774)
Q Consensus 444 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 523 (774)
..+.++.||++||.. |++|||.+|++...
T Consensus 187 -------------------------------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~ 215 (280)
T d1dbia_ 187 -------------------------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTIT 215 (280)
T ss_dssp -------------------------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEET
T ss_pred -------------------------------------------CCCCcCCcCCCCCcc--------cccCCccceecccc
Confidence 224678999999976 99999999999887
Q ss_pred CCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCc
Q 046220 524 PNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPL 603 (774)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 603 (774)
. ..|..++|||||||+|||++|||++. .+++.+||++|++||+++. ....
T Consensus 216 ~--------------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~--------------~~~~ 265 (280)
T d1dbia_ 216 G--------------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKIS--------------GTGT 265 (280)
T ss_dssp T--------------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCT--------------TBTT
T ss_pred C--------------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCC--------------CCCC
Confidence 6 68999999999999999999999995 5589999999999998763 2234
Q ss_pred ccCCCccCCCCCCC
Q 046220 604 DFGAGHINPNKAMD 617 (774)
Q Consensus 604 ~~G~G~vn~~~A~~ 617 (774)
.||+|+||+.+||+
T Consensus 266 ~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 266 YFKYGRINSYNAVT 279 (280)
T ss_dssp TBSSEECCHHHHHT
T ss_pred cCCCCeEcHHHHcC
Confidence 79999999999975
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=4.6e-48 Score=406.16 Aligned_cols=258 Identities=29% Similarity=0.454 Sum_probs=213.5
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
++.+|.++++|+||+|||||||||++||+|+ +...++|..+
T Consensus 13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-----------------------------~~~~~~~~~~---------- 53 (274)
T d1r0re_ 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG---------- 53 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT----------
T ss_pred hHHHHHcCCCCCCeEEEEECCCCCCCChhhc-----------------------------ccCCccccCC----------
Confidence 4568999999999999999999999999995 2223344332
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
...+.|.++|||||||||++..... .+.|+||+|+|+.+|+++..+. +..++++++++++.+++++
T Consensus 54 ---~~~~~d~~gHGT~vAgii~~~~~~~---------~~~gvap~a~i~~~~~~~~~~~--~~~~~i~~ai~~a~~~~~~ 119 (274)
T d1r0re_ 54 ---EAYNTDGNGHGTHVAGTVAALDNTT---------GVLGVAPSVSLYAVKVLNSSGS--GSYSGIVSGIEWATTNGMD 119 (274)
T ss_dssp ---CCTTCCSSSHHHHHHHHHHCCSSSS---------BCCCSSTTSEEEEEECSCTTSE--ECHHHHHHHHHHHHHTTCS
T ss_pred ---CCCCCCccccccccccccccccccc---------cccccCCCcEEEEEEEeCCCCC--cCHHHHHHHHHHHHhcCCc
Confidence 1235678899999999999875332 1479999999999999988775 6788999999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC----CCccCCCCceEEecccccCcceeEEEEeCCceE
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP----YSIENGAPWITTVGAGTVDREFAARVTLGNEEL 359 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 359 (774)
|+|+|||... ..........++.++++++|+||||+|... ...+...+++|+|||.+
T Consensus 120 i~n~S~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~---------------- 180 (274)
T d1r0re_ 120 VINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD---------------- 180 (274)
T ss_dssp EEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC----------------
T ss_pred eecccccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeEC----------------
Confidence 9999999853 234455666688899999999999998653 24456678888888732
Q ss_pred EEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCC
Q 046220 360 SVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR 439 (774)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~ 439 (774)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T d1r0re_ 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceE
Q 046220 440 QNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDIL 519 (774)
Q Consensus 440 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 519 (774)
..+.+++||++||. |||+|||.+|+
T Consensus 181 -----------------------------------------------~~~~~~~~s~~g~~--------~di~APG~~i~ 205 (274)
T d1r0re_ 181 -----------------------------------------------SNSNRASFSSVGAE--------LEVMAPGAGVY 205 (274)
T ss_dssp -----------------------------------------------TTSCBCTTCCCSTT--------EEEEEECSSEE
T ss_pred -----------------------------------------------CCCCcccccCCCCC--------EEEEecCCCcc
Confidence 22467899999984 49999999999
Q ss_pred eecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCcc
Q 046220 520 GAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599 (774)
Q Consensus 520 sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 599 (774)
++.+. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 206 ~~~~~--------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~-------------- 257 (274)
T d1r0re_ 206 STYPT--------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-------------- 257 (274)
T ss_dssp EEETT--------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------
T ss_pred cccCC--------------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------
Confidence 99876 78999999999999999999999999999999999999999998763
Q ss_pred CCCcccCCCccCCCCCCC
Q 046220 600 GTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 600 ~~~~~~G~G~vn~~~A~~ 617 (774)
++..||+|+||+.+|++
T Consensus 258 -~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 -SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -CHHHHTTCBCCHHHHTC
T ss_pred -CCCceEcCeecHHHhcC
Confidence 23589999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=4.5e-47 Score=399.99 Aligned_cols=260 Identities=33% Similarity=0.472 Sum_probs=214.5
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
++.+|+++++|+||+|||||||||++||+|+.. ..++|....
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-----------------------------~~~~~~~~~--------- 54 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPSE--------- 54 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTTC---------
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc-----------------------------CCccccCCC---------
Confidence 466999999999999999999999999999621 122222210
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
.....+..+|||||||||+|..... ...||||+|+|+.+|+++.++. +...+++++|+|+++.+++
T Consensus 55 ---~~~~~~~~~HGT~vAgiiag~~~~~---------~~~giAp~a~l~~~kv~~~~~~--~~~~~~~~ai~~a~~~~~~ 120 (281)
T d1to2e_ 55 ---TNPFQDNNSHGTHVAGTVAALNNSI---------GVLGVAPSASLYAVKVLGADGS--GQYSWIINGIEWAIANNMD 120 (281)
T ss_dssp ---CCTTCCSSSHHHHHHHHHHCCSSSS---------SBCCSSTTSEEEEEECSCTTSE--ECHHHHHHHHHHHHHTTCS
T ss_pred ---CCCCcCcCCCCceeecccccCCCCC---------CcceeecccEEEEEEEeCCCCC--cCHHHHHHHHHHHHhcccc
Confidence 1122346799999999999974321 1479999999999999987775 6788899999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC----CCccCCCCceEEecccccCcceeEEEEeCCceE
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP----YSIENGAPWITTVGAGTVDREFAARVTLGNEEL 359 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 359 (774)
|||+|||.. .....+..++..+.++|+++|+||||+|... ...++..+++|+||+.+
T Consensus 121 v~n~S~g~~---~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~---------------- 181 (281)
T d1to2e_ 121 VINMSLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD---------------- 181 (281)
T ss_dssp EEEECEEBS---CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC----------------
T ss_pred ccccccCCC---cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeec----------------
Confidence 999999975 3456677788889999999999999998653 33456778888888732
Q ss_pred EEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCC
Q 046220 360 SVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR 439 (774)
Q Consensus 360 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~ 439 (774)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T d1to2e_ 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceE
Q 046220 440 QNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDIL 519 (774)
Q Consensus 440 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 519 (774)
..+.++.||++||.+ |+.|||.+|+
T Consensus 182 -----------------------------------------------~~~~~~~~S~~G~~~--------d~~apG~~i~ 206 (281)
T d1to2e_ 182 -----------------------------------------------SSNQRASFSSVGPEL--------DVMAPGVSIQ 206 (281)
T ss_dssp -----------------------------------------------TTSCBCTTCCCSTTC--------CEEEECSSEE
T ss_pred -----------------------------------------------CCCCCCcccCCCCCc--------cccCCCCCce
Confidence 224678899999976 9999999999
Q ss_pred eecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCcc
Q 046220 520 GAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVA 599 (774)
Q Consensus 520 sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 599 (774)
++.+. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 207 s~~~~--------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~-------------- 258 (281)
T d1to2e_ 207 STLPG--------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG-------------- 258 (281)
T ss_dssp EEETT--------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------
T ss_pred eecCC--------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------
Confidence 99876 68899999999999999999999999999999999999999999763
Q ss_pred CCCcccCCCccCCCCCCCC
Q 046220 600 GTPLDFGAGHINPNKAMDP 618 (774)
Q Consensus 600 ~~~~~~G~G~vn~~~A~~~ 618 (774)
++..||+|+||+.+|++.
T Consensus 259 -~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 259 -DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp -CHHHHTTCBCCHHHHTSS
T ss_pred -CCCCcccCcccHHHHHhh
Confidence 234799999999999983
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=7.9e-47 Score=397.78 Aligned_cols=264 Identities=30% Similarity=0.433 Sum_probs=220.8
Q ss_pred ccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccc
Q 046220 119 VGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQ 196 (774)
Q Consensus 119 ~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~ 196 (774)
|+++. ++.+|+.+ +|+||+|||||||||++||+|.+ +++..++|.++
T Consensus 13 w~l~~i~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~---------------------------~~~~~~~~~~~--- 61 (279)
T d1thma_ 13 YGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN--- 61 (279)
T ss_dssp CHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT---
T ss_pred cChhhCCHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcC---------------------------Ceecccccccc---
Confidence 44443 45689887 89999999999999999999974 24444555433
Q ss_pred cCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHH
Q 046220 197 YGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQ 276 (774)
Q Consensus 197 ~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~ 276 (774)
...+.|..+|||||||+|++...++. .+.||||+|+|+.+|++...+. +...+++++|++
T Consensus 62 ----------~~~~~d~~~HGT~vag~i~~~~~~~~--------~~~GvAp~a~l~~~~v~~~~~~--~~~~~~~~ai~~ 121 (279)
T d1thma_ 62 ----------DSTPQNGNGHGTHCAGIAAAVTNNST--------GIAGTAPKASILAVRVLDNSGS--GTWTAVANGITY 121 (279)
T ss_dssp ----------BSCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHH
T ss_pred ----------CcccccccccccccceeeeeccCCCc--------cccccCCcceEEEEEEEecCCC--CcHHHHHHHHHH
Confidence 13467889999999999999864432 2589999999999999988776 788999999999
Q ss_pred HHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCC
Q 046220 277 AIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGN 356 (774)
Q Consensus 277 a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 356 (774)
+++.+++|+|+|||... .......+...+.++|+++|+|+||+|......+...|++++|||++
T Consensus 122 ~~~~~~~i~n~S~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~------------- 185 (279)
T d1thma_ 122 AADQGAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD------------- 185 (279)
T ss_dssp HHHTTCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC-------------
T ss_pred HhhcCCceeccccCccc---cchhHHHHHHHHHhcCceEEEeccccccCCCcccccccccccccccc-------------
Confidence 99999999999999853 34556677778889999999999999988888888889999999732
Q ss_pred ceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEec
Q 046220 357 EELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISA 436 (774)
Q Consensus 357 g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n 436 (774)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d1thma_ 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCC
Q 046220 437 DSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV 516 (774)
Q Consensus 437 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 516 (774)
..+.++.||++|+.. ||.|||.
T Consensus 186 --------------------------------------------------~~~~~~~~S~~G~~~--------di~Apg~ 207 (279)
T d1thma_ 186 --------------------------------------------------QNDNKSSFSTYGSWV--------DVAAPGS 207 (279)
T ss_dssp --------------------------------------------------TTSCBCTTCCCCTTC--------CEEEECS
T ss_pred --------------------------------------------------CCCCCccccCCCceE--------EEeeeee
Confidence 224678999999986 9999999
Q ss_pred ceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCC
Q 046220 517 DILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADIST 596 (774)
Q Consensus 517 ~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 596 (774)
+|+++.+. +.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.
T Consensus 208 ~i~~~~~~--------------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~----------- 260 (279)
T d1thma_ 208 SIYSTYPT--------------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS----------- 260 (279)
T ss_dssp SEEEEETT--------------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT-----------
T ss_pred ccccccCc--------------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC-----------
Confidence 99999886 7899999999999999999999999765 78999999999998763
Q ss_pred CccCCCcccCCCccCCCCCCC
Q 046220 597 GVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 597 ~~~~~~~~~G~G~vn~~~A~~ 617 (774)
..+..||+|+||+.+|++
T Consensus 261 ---g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 261 ---GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ---TBTTTBSSEECCHHHHHH
T ss_pred ---CCCCcceeeeEcHHHhhC
Confidence 233579999999999875
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1.2e-46 Score=394.18 Aligned_cols=257 Identities=32% Similarity=0.469 Sum_probs=216.4
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
++.+|+++++|+||+||||||||+ +||+|... ..++|..+
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-----------------------------~~~~~~~~---------- 52 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-----------------------------GGASFVPG---------- 52 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-----------------------------EEEECSTT----------
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc-----------------------------ccccccCC----------
Confidence 456999999999999999999998 89999521 12233322
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
...+.|.++|||||||||++..... ...|+||+|+|+.+|++...+. .....+.++++++..++++
T Consensus 53 ---~~~~~d~~~HGT~vAgii~~~~~~~---------~~~giap~a~i~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~ 118 (269)
T d1gcia_ 53 ---EPSTQDGNGHGTHVAGTIAALNNSI---------GVLGVAPSAELYAVKVLGASGS--GSVSSIAQGLEWAGNNGMH 118 (269)
T ss_dssp ---CCSCSCSSSHHHHHHHHHHCCCSSS---------BCCCSSTTCEEEEEECBCTTSC--BCHHHHHHHHHHHHHTTCS
T ss_pred ---CCCccccchhhheecccccccCCCc---------cccccCCceEEEEEEEecCCCC--ccHHHHHHHHHHHHhcccc
Confidence 1245678899999999999875332 2479999999999999988775 7788899999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEee
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g 363 (774)
+||+|||... .......+...+.++|+++|+||||+|.....+++..|++|+||+++
T Consensus 119 ~in~s~g~~~---~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~-------------------- 175 (269)
T d1gcia_ 119 VANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD-------------------- 175 (269)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC--------------------
T ss_pred cccccccccc---ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEc--------------------
Confidence 9999999753 23445566778899999999999999988888888899999999732
Q ss_pred eeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCC
Q 046220 364 KSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLF 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 443 (774)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T d1gcia_ 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecC
Q 046220 444 PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV 523 (774)
Q Consensus 444 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 523 (774)
..+.++.||++||.. ||+|||.++.++.+
T Consensus 176 -------------------------------------------~~~~~~~~S~~G~~~--------di~Apg~~~~~~~~ 204 (269)
T d1gcia_ 176 -------------------------------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYP 204 (269)
T ss_dssp -------------------------------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEET
T ss_pred -------------------------------------------cCCCcccccCCCCCc--------eEEEeeecceeccC
Confidence 124568899999875 99999999999887
Q ss_pred CCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCc
Q 046220 524 PNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPL 603 (774)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 603 (774)
. ..|..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++.
T Consensus 205 ~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g---------------~~~ 255 (269)
T d1gcia_ 205 G--------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------STN 255 (269)
T ss_dssp T--------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------------CHH
T ss_pred C--------------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------------CCC
Confidence 6 68999999999999999999999999999999999999999999763 234
Q ss_pred ccCCCccCCCCCCC
Q 046220 604 DFGAGHINPNKAMD 617 (774)
Q Consensus 604 ~~G~G~vn~~~A~~ 617 (774)
.||+|+||+++|++
T Consensus 256 ~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 256 LYGSGLVNAEAATR 269 (269)
T ss_dssp HHTTCBCCHHHHTC
T ss_pred CcccCeEcHHHhcC
Confidence 79999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=5.5e-43 Score=373.60 Aligned_cols=294 Identities=24% Similarity=0.304 Sum_probs=219.6
Q ss_pred cccccc--cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeecccccc
Q 046220 118 FVGLKK--HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLK 195 (774)
Q Consensus 118 ~~g~~~--~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~ 195 (774)
.||++. ++.+|..+++|+||+|||||||||++||+|.++ +...++|.....
T Consensus 7 ~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~ 59 (309)
T d2ixta1 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT 59 (309)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS
T ss_pred ChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCC
Confidence 355543 577999999999999999999999999999742 333344443211
Q ss_pred ccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHH
Q 046220 196 QYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMD 275 (774)
Q Consensus 196 ~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~ 275 (774)
.......|..+|||||||||+|...++ ...+.||||+|+|+.+|++...+. +..++++.+++
T Consensus 60 ---------~~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~--~~~~~~~~~~~ 121 (309)
T d2ixta1 60 ---------PINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGS--GYSDDIAAAIR 121 (309)
T ss_dssp ---------CEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSC--CCHHHHHHHHH
T ss_pred ---------CCCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCC--ccccccccccc
Confidence 112345678899999999999975432 222589999999999999988776 78889999999
Q ss_pred HHHhC-----CCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC--CccCCCCceEEecccccCcce
Q 046220 276 QAIAD-----GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY--SIENGAPWITTVGAGTVDREF 348 (774)
Q Consensus 276 ~a~~~-----gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~ 348 (774)
++++. ...|+|+|++.. ........+...+.++|+++|+||||++.... ..++..+.+++|++.......
T Consensus 122 ~a~~~~~~~~~~~v~~~s~~~~---~~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~ 198 (309)
T d2ixta1 122 HAADQATATGTKTIISMSLGSS---ANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQN 198 (309)
T ss_dssp HHHHHHHHHTCCEEEEECCCBS---SCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEET
T ss_pred cccccccccccccccccccccc---ccccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccc
Confidence 99875 347899999875 23445566667888999999999999986644 344566778888763211000
Q ss_pred eEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcC
Q 046220 349 AARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTR 428 (774)
Q Consensus 349 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~G 428 (774)
+. .
T Consensus 199 -----------------------------------------------------~~---~--------------------- 201 (309)
T d2ixta1 199 -----------------------------------------------------GT---Y--------------------- 201 (309)
T ss_dssp -----------------------------------------------------TE---E---------------------
T ss_pred -----------------------------------------------------cc---c---------------------
Confidence 00 0
Q ss_pred ceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCccc
Q 046220 429 AAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILK 508 (774)
Q Consensus 429 a~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 508 (774)
..........++++|+... ...|
T Consensus 202 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~--~~~~ 224 (309)
T d2ixta1 202 -------------------------------------------------------RVADYSSRGYISTAGDYVI--QEGD 224 (309)
T ss_dssp -------------------------------------------------------EECTTSCCCCTTTTTSSSC--CTTC
T ss_pred -------------------------------------------------------ccccccccccccccccccc--CCCc
Confidence 0001123445677777654 5678
Q ss_pred CeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccccccc
Q 046220 509 PDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588 (774)
Q Consensus 509 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g 588 (774)
|||+|||.+|+++.+. ..|..++|||||||+|||++|||+|++|+|++.+||++|++||++++..+
T Consensus 225 vdi~apG~~~~s~~~~--------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~ 290 (309)
T d2ixta1 225 IEISAPGSSVYSTWYN--------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290 (309)
T ss_dssp CCEEEECSSEEEECTT--------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCB
T ss_pred ceeecCCCceeeecCC--------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC
Confidence 9999999999999876 68999999999999999999999999999999999999999999886543
Q ss_pred ccccccCCCccCCCcccCCCccCC
Q 046220 589 DMIADISTGVAGTPLDFGAGHINP 612 (774)
Q Consensus 589 ~~~~~~~~~~~~~~~~~G~G~vn~ 612 (774)
..- .....++.+|+|++|+
T Consensus 291 ~~g-----~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 291 GYG-----AAIGDDYASGFGFARV 309 (309)
T ss_dssp STT-----CCSSSBTTTBTCBCCC
T ss_pred CcC-----CccCCCcccCCCEecC
Confidence 211 2345677889999885
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=4.7e-42 Score=361.02 Aligned_cols=238 Identities=32% Similarity=0.419 Sum_probs=192.3
Q ss_pred CCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCC
Q 046220 130 AAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDS 209 (774)
Q Consensus 130 ~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~ 209 (774)
...+|+||+|||||||||++||+|.++ +...+.+ ...
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~~~~----------------~~~ 62 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTY----------------YYS 62 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEES----------------SSC
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC---------------------------ceeccCC----------------CCC
Confidence 455899999999999999999999743 1111111 113
Q ss_pred CCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC-------CC
Q 046220 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD-------GV 282 (774)
Q Consensus 210 ~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~-------gv 282 (774)
+.|.++|||||||||+|.. .|+||+|+|+.+|++..... ...+++..+++++... ++
T Consensus 63 ~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (279)
T d2pwaa1 63 SRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGS--GQYSTIIAGMDFVASDKNNRNCPKG 126 (279)
T ss_dssp SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSC--CCHHHHHHHHHHHHHHGGGSCCTTE
T ss_pred cccccCccccccccccccc--------------cccCCCccccceeeecCCcc--cccccccchhheecccccccccccc
Confidence 4577899999999999863 69999999999999987765 7788888999998874 34
Q ss_pred cEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC-CccCCCCceEEecccccCcceeEEEEeCCceEEE
Q 046220 283 DVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY-SIENGAPWITTVGAGTVDREFAARVTLGNEELSV 361 (774)
Q Consensus 283 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 361 (774)
+|+|+|||.. ..+.+..++..+.++|+++|+||||++.... ..+...|++|+|||.+
T Consensus 127 ~i~n~s~g~~----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~------------------ 184 (279)
T d2pwaa1 127 VVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD------------------ 184 (279)
T ss_dssp EEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC------------------
T ss_pred cceeccCCCc----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe------------------
Confidence 5999999974 3456777777889999999999999986643 3556778888888732
Q ss_pred eeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC
Q 046220 362 IGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN 441 (774)
Q Consensus 362 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 441 (774)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEee
Q 046220 442 LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGA 521 (774)
Q Consensus 442 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 521 (774)
..+.+++||++||.. ||+|||.+|+++
T Consensus 185 ---------------------------------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~ 211 (279)
T d2pwaa1 185 ---------------------------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILST 211 (279)
T ss_dssp ---------------------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ---------------------------------------------ecCCCccccCCCCcc--------cccccccccccc
Confidence 235678999999976 999999999999
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCC
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGT 601 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 601 (774)
++. +.|..++|||||||+|||++|||+|++|.++++++|. |++||++..
T Consensus 212 ~~~--------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~---------------- 260 (279)
T d2pwaa1 212 WIG--------------GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD---------------- 260 (279)
T ss_dssp ETT--------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC----------------
T ss_pred ccC--------------CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC----------------
Confidence 876 7899999999999999999999999999999887775 677887532
Q ss_pred CcccCCCccCC
Q 046220 602 PLDFGAGHINP 612 (774)
Q Consensus 602 ~~~~G~G~vn~ 612 (774)
....|+|++|.
T Consensus 261 ~~~~g~g~~n~ 271 (279)
T d2pwaa1 261 LSNIPFGTVNL 271 (279)
T ss_dssp CBSCCTTSCCE
T ss_pred CCCCCCCChhh
Confidence 23689999885
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=8.1e-42 Score=365.91 Aligned_cols=299 Identities=24% Similarity=0.281 Sum_probs=219.6
Q ss_pred CCCCcC-CCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 125 AGLWPA-AGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 125 ~~~w~~-~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
+.+|.. |++|+||+|||||||||++||+|.... . ..+++...+.+..
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~---------------~~~~~~~~~~~~~----------- 58 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A---------------FRGKITALYALGR----------- 58 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T---------------TTTCEEEEEETTT-----------
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc------c---------------cCCcEEeecCCCC-----------
Confidence 446664 999999999999999999999997431 0 1123333333221
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
..++.|..||||||||||+|+... ..||||+|+|+.+|+++..+........+..+++++...+++
T Consensus 59 ---~~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
T d1wmda2 59 ---TNNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGAR 124 (318)
T ss_dssp ---TTCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCS
T ss_pred ---CCCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCc
Confidence 134567899999999999997433 379999999999999987764334556678999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCcc--CCCCceEEecccccCcceeEEEEeCCceEEE
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIE--NGAPWITTVGAGTVDREFAARVTLGNEELSV 361 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 361 (774)
|+|+|||.............+...+.++++++|+|+||.|....... ...+.++++.+.......
T Consensus 125 i~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~------------- 191 (318)
T d1wmda2 125 IHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS------------- 191 (318)
T ss_dssp EEEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG-------------
T ss_pred eeecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccc-------------
Confidence 99999998765555566666666778899999999999997655433 334555555542211000
Q ss_pred eeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC
Q 046220 362 IGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN 441 (774)
Q Consensus 362 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 441 (774)
.. .
T Consensus 192 -------------------------------------------------~~---~------------------------- 194 (318)
T d1wmda2 192 -------------------------------------------------FG---S------------------------- 194 (318)
T ss_dssp -------------------------------------------------GC---G-------------------------
T ss_pred -------------------------------------------------cc---c-------------------------
Confidence 00 0
Q ss_pred CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEee
Q 046220 442 LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGA 521 (774)
Q Consensus 442 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 521 (774)
.......+..||++||... ...|||+.|||.+|+++
T Consensus 195 ------------------------------------------~~~~~~~~~~~s~~G~~~~--~~~~~~~~a~G~~i~~~ 230 (318)
T d1wmda2 195 ------------------------------------------YADNINHVAQFSSRGPTKD--GRIKPDVMAPGTFILSA 230 (318)
T ss_dssp ------------------------------------------GGSCTTSBCTTSCCCCCTT--SCCCCCEEEECSSEEEE
T ss_pred ------------------------------------------ccccccccccccccCCCcC--CCcccceeecCceEEec
Confidence 0112345678999999876 57899999999999998
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHccccccccccccccccCC
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH-----EWSSAAIRSAMMTTADVLDNAYDMIADIST 596 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-----~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 596 (774)
............. .. ..|..++|||||||+|||++|||+|++| .+++.+||++|++||+++.
T Consensus 231 ~~~~~~~~~~~~~-~~-~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~----------- 297 (318)
T d1wmda2 231 RSSLAPDSSFWAN-HD-SKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG----------- 297 (318)
T ss_dssp CCTTCCGGGSSEE-EE-TTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS-----------
T ss_pred cccccccCccccC-CC-cceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCC-----------
Confidence 8765433222111 11 5678899999999999999999999754 5889999999999999763
Q ss_pred CccCCCcccCCCccCCCCCCC
Q 046220 597 GVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 597 ~~~~~~~~~G~G~vn~~~A~~ 617 (774)
...+...||||+||+.+||+
T Consensus 298 -~~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 298 -LGYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp -SCSSCTTTTTCBCCHHHHHT
T ss_pred -CCCCCCCeeeceecHHHHhC
Confidence 34456689999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-38 Score=343.17 Aligned_cols=283 Identities=16% Similarity=0.164 Sum_probs=190.3
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
+.+|..+.+|+||+|||||||||++||+|.++. ...+.|..... ....
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~---------------------------~~~~~~~~~~~-----~~~~ 74 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY---------------------------DPGASFDVNDQ-----DPDP 74 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB---------------------------CGGGCEETTTT-----BSCC
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc---------------------------ccCCCccccCC-----CCcc
Confidence 458999999999999999999999999997531 11111110000 0011
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-CCCc
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-DGVD 283 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-~gvd 283 (774)
.+.....|..+|||||||||+|...++.. ..|+||+++++.+|+++. ...+.+.++.++++ ++++
T Consensus 75 ~~~~~~~~~~gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 140 (334)
T d1p8ja2 75 QPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLDG------EVTDAVEARSLGLNPNHIH 140 (334)
T ss_dssp CCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSSS------CCCHHHHHHHHTSCTTTCC
T ss_pred ccccccccCccchhhhhhhhhhccccccc--------cccccccccccchhhccc------cccchHHHHHHHhhhcCCc
Confidence 12233557899999999999998654332 379999999999998653 44556677777776 6899
Q ss_pred EEEECcCCCCC-CCCC--------cHHHHHHHHHHcCCcEEEEccCCCCCCCCCcc----CCCCceEEecccccCcceeE
Q 046220 284 VMSLSLGFPET-TFDE--------NPIAIGAFAALKKGIFVACSAGNSGPRPYSIE----NGAPWITTVGAGTVDREFAA 350 (774)
Q Consensus 284 VIn~SlG~~~~-~~~~--------~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----~~~p~vitVgA~~~~~~~~~ 350 (774)
++|+|||.... .... ..+..+...+..+|+++|+||||++....... ...+.+++|++.
T Consensus 141 ~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~-------- 212 (334)
T d1p8ja2 141 IYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA-------- 212 (334)
T ss_dssp EEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE--------
T ss_pred EEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccc--------
Confidence 99999997542 1111 11223334556789999999999875433221 112233333321
Q ss_pred EEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCce
Q 046220 351 RVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAA 430 (774)
Q Consensus 351 ~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~ 430 (774)
T Consensus 213 -------------------------------------------------------------------------------- 212 (334)
T d1p8ja2 213 -------------------------------------------------------------------------------- 212 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCe
Q 046220 431 GAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPD 510 (774)
Q Consensus 431 g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 510 (774)
...+..+.||++|+... .+
T Consensus 213 -------------------------------------------------------~~~g~~~~~s~~~~~~~------~~ 231 (334)
T d1p8ja2 213 -------------------------------------------------------TQFGNVPWYSEACSSTL------AT 231 (334)
T ss_dssp -------------------------------------------------------CTTSCCCTTCCBCTTCC------EE
T ss_pred -------------------------------------------------------ccCCceeeecccCCccc------cc
Confidence 12344566777766542 14
Q ss_pred eEeCCCc-----eEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccc
Q 046220 511 ILAPGVD-----ILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585 (774)
Q Consensus 511 I~APG~~-----I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~ 585 (774)
..+||.. +.+.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~ 297 (334)
T d1p8ja2 232 TYSSGNQNEKQIVTTDLRQ--------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAH 297 (334)
T ss_dssp EECCCSTTSCCEEEEETTT--------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTT
T ss_pred cccccccccccccccccCC--------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 4455432 2232222 67889999999999999999999999999999999999999999876
Q ss_pred cccccccccCCCccCCCcccCCCccCCCCCCC
Q 046220 586 NAYDMIADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 586 ~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
.......... ........||+|+||+.+||+
T Consensus 298 ~~~~~~~~~~-~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 298 LNADDWATNG-VGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp CCCSCCEECT-TSCEEBTTTBTCBCCHHHHHH
T ss_pred CCCccccccC-CCcccCCCCcceEeCHHHHHH
Confidence 5443332221 122334588999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-38 Score=341.29 Aligned_cols=285 Identities=21% Similarity=0.189 Sum_probs=200.3
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|.++++|+||+|||||||||++||+|.++-.. .+.++|.+..
T Consensus 36 ~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~-------------------------~~~~~~~~~~---------- 80 (339)
T d2id4a2 36 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA-------------------------EGSWDFNDNT---------- 80 (339)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG-------------------------GGCEETTTTB----------
T ss_pred HHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc-------------------------ccccccccCC----------
Confidence 45899999999999999999999999999853100 0122333221
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcE
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDV 284 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdV 284 (774)
.......++.+||||||++|+|....+.. +.||||+|+|+.+++.... ....++..++.++++. .+|
T Consensus 81 ~~~~~~~~~~~HGT~vag~iaa~~~~~~~--------~~Gvap~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~v 147 (339)
T d2id4a2 81 NLPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSGD----ITTEDEAASLIYGLDV-NDI 147 (339)
T ss_dssp SCCCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTSC----CCHHHHHHHTTTTTTT-CSE
T ss_pred CccCCCcccccccceeeeccccccccccc--------ccccccccccceEEEeecc----ccchHHHHHHHHHHhh-CCE
Confidence 11123456789999999999997644322 4799999999999987532 5677788888887766 599
Q ss_pred EEECcCCCCCC-CC---CcH-----HHHHHHHHHcCCcEEEEccCCCCCCCCCc--cC--CCCceEEecccccCcceeEE
Q 046220 285 MSLSLGFPETT-FD---ENP-----IAIGAFAALKKGIFVACSAGNSGPRPYSI--EN--GAPWITTVGAGTVDREFAAR 351 (774)
Q Consensus 285 In~SlG~~~~~-~~---~~~-----~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~--~~p~vitVgA~~~~~~~~~~ 351 (774)
+|+|||..... .. ... ...+...+..+|+++|+||||++...... +. ..+.+++|++
T Consensus 148 ~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (339)
T d2id4a2 148 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGA---------- 217 (339)
T ss_dssp EEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEE----------
T ss_pred EeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccc----------
Confidence 99999875321 11 111 22333455678999999999987543221 11 1122222222
Q ss_pred EEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceE
Q 046220 352 VTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAG 431 (774)
Q Consensus 352 ~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g 431 (774)
T Consensus 218 -------------------------------------------------------------------------------- 217 (339)
T d2id4a2 218 -------------------------------------------------------------------------------- 217 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCee
Q 046220 432 AIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDI 511 (774)
Q Consensus 432 ~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI 511 (774)
....+..+.||++|+.. ...++.
T Consensus 218 -----------------------------------------------------~~~~g~~~~~s~~~~~~----~~~~~~ 240 (339)
T d2id4a2 218 -----------------------------------------------------IDHKDLHPPYSEGCSAV----MAVTYS 240 (339)
T ss_dssp -----------------------------------------------------ECTTSCCCTTCCCCTTE----EEEEEC
T ss_pred -----------------------------------------------------ccccccccccccccCcc----ceeeee
Confidence 12234567788888764 345688
Q ss_pred EeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccc
Q 046220 512 LAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMI 591 (774)
Q Consensus 512 ~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~ 591 (774)
.+||..+.++.... ..|..++|||||||||||++|||+|++|+|++.|||.+|++||++++......
T Consensus 241 ~~~g~~~~s~~~~~-------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~ 307 (339)
T d2id4a2 241 SGSGEYIHSSDING-------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGD 307 (339)
T ss_dssp SBTTBCEEEECSTT-------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGC
T ss_pred eccccccceeccCC-------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcc
Confidence 88999998876542 56888999999999999999999999999999999999999999886543222
Q ss_pred cccCCCccCCCcccCCCccCCCCCCC
Q 046220 592 ADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 592 ~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
.............||||+||+.+||+
T Consensus 308 ~~~~~~~~~~~~~~G~G~ln~~~Av~ 333 (339)
T d2id4a2 308 WRDSAMGKKYSHRYGFGKIDAHKLIE 333 (339)
T ss_dssp CEECSSSSEEBTTTBTCBCCHHHHHH
T ss_pred ccccCCCCCcCCCccchhhCHHHHHH
Confidence 11111233445679999999999987
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.95 E-value=1.2e-29 Score=274.70 Aligned_cols=314 Identities=16% Similarity=0.139 Sum_probs=181.6
Q ss_pred cCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCC
Q 046220 129 PAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYD 208 (774)
Q Consensus 129 ~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~ 208 (774)
..+++|+||+|||||||||++||+|.+. |+. +... + ...
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~-------~~~~-----------~---------------~~~ 56 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS-------LGVS-----------A---------------PQV 56 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH-------TTCC-----------C---------------CCE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh-------cCCC-----------C---------------CCC
Confidence 4689999999999999999999999731 100 0000 0 001
Q ss_pred CCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHH---hCCCcEE
Q 046220 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI---ADGVDVM 285 (774)
Q Consensus 209 ~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~---~~gvdVI 285 (774)
.+.|.++|+|||++++++...... .....+.||||+|+|+.+|+... ...++.++++++ +++++||
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~Vi 125 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT-------DAGFLNAITTAVHDPTHKPSIV 125 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS-------HHHHHHHHHHHHHCTTTCCSEE
T ss_pred ceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC-------CCchHHHHHHHHHhhhcCCeEE
Confidence 123456788888887765432110 01122589999999999998643 233445555554 4689999
Q ss_pred EECcCCCCCCCC---CcHHHHHHHHHHcCCcEEEEccCCCCCCCC--------CccCCCCceEEecccccCcceeEEEEe
Q 046220 286 SLSLGFPETTFD---ENPIAIGAFAALKKGIFVACSAGNSGPRPY--------SIENGAPWITTVGAGTVDREFAARVTL 354 (774)
Q Consensus 286 n~SlG~~~~~~~---~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--------~~~~~~p~vitVgA~~~~~~~~~~~~~ 354 (774)
|+|||....... ...+......+..+|+++|+|+||+|.... ..+...+++++|++......
T Consensus 126 n~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 198 (357)
T d1t1ga_ 126 SISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVAS------- 198 (357)
T ss_dssp EECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEEC-------
T ss_pred ecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCC-------
Confidence 999997542221 233455566777899999999999985432 22345677888876432111
Q ss_pred CCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEE
Q 046220 355 GNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAII 434 (774)
Q Consensus 355 ~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~ 434 (774)
.+.. ...+.+. . ...... ..+.....
T Consensus 199 -~~~~--~~~~~~~--------------~--~~~~~~------------------~~~g~s~~----------------- 224 (357)
T d1t1ga_ 199 -AGRI--ERETVWN--------------D--GPDGGS------------------TGGGVSRI----------------- 224 (357)
T ss_dssp -SSCE--EEEEECB--------------C--HHHHCB------------------CCCEECSS-----------------
T ss_pred -CCcc--ccceecc--------------c--cccccc------------------ccCCcccc-----------------
Confidence 0000 0000000 0 000000 00000000
Q ss_pred ecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeC
Q 046220 435 SADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAP 514 (774)
Q Consensus 435 ~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 514 (774)
+ ............+++.+++.. ++.|||+.++
T Consensus 225 -------------------------------------------~---~~p~~~~~~~~~~~~~~~~~~--~~~~pd~~~~ 256 (357)
T d1t1ga_ 225 -------------------------------------------F---PLPSWQERANVPPSANPGAGS--GRGVPDVAGN 256 (357)
T ss_dssp -------------------------------------------S---CCCGGGTTSCCCCCSSTTCCC--CCEECSEEEE
T ss_pred -------------------------------------------c---ccCcccccccccccccCCCCC--Cceecceecc
Confidence 0 000012234566777777665 7999999999
Q ss_pred CCceE--eecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCC---CCHHHHHHHHHccccccccccc
Q 046220 515 GVDIL--GAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHE---WSSAAIRSAMMTTADVLDNAYD 589 (774)
Q Consensus 515 G~~I~--sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~---~s~~~ik~~L~~TA~~~~~~g~ 589 (774)
+.... ++... +.|..++|||||||||||++|||+|+++. +...+|+++...+.+++....+
T Consensus 257 ~~~~~~~~~~~~--------------~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~ 322 (357)
T d1t1ga_ 257 ADPATGYEVVID--------------GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNN 322 (357)
T ss_dssp CCTTEEEEEEET--------------TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBC
T ss_pred cCCCCceEEecC--------------CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCC
Confidence 76654 34333 68999999999999999999999999754 2344444433333333211111
Q ss_pred cccccC---CCccCCCcccCCCccCCCCCCC
Q 046220 590 MIADIS---TGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 590 ~~~~~~---~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
...... ...++.+..+|||++|+.++++
T Consensus 323 ~~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 323 DIANRARIYQAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp CCSSSSCCSBCCSSSBTTTBTCEECHHHHHH
T ss_pred CCCCCCCcccCccCCCCCccCchhhHHHHHH
Confidence 110000 1244567789999999887765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=1.6e-28 Score=267.73 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=94.1
Q ss_pred CCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-CCCcEEEECcC
Q 046220 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-DGVDVMSLSLG 290 (774)
Q Consensus 212 D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-~gvdVIn~SlG 290 (774)
+..+||||+++++.+.... ..+.||||+|+|+.+|++.+.+. ....+++++|+||++ ++++|||+|||
T Consensus 66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~--~~~~~~~~a~~~a~~~~~~~Vis~S~g 134 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSA--SGNTGLTQAFNQAVSDNVAKVINVSLG 134 (369)
T ss_dssp TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTS--STTHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCC--cchHHHHHHHHHHHHcCCCceeecccc
Confidence 4578999999998765321 12579999999999999998876 778899999999996 57999999999
Q ss_pred CCCC----CCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC-------------CccCCCCceEEecccc
Q 046220 291 FPET----TFDENPIAIGAFAALKKGIFVACSAGNSGPRPY-------------SIENGAPWITTVGAGT 343 (774)
Q Consensus 291 ~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-------------~~~~~~p~vitVgA~~ 343 (774)
.... ....+.+..++.++.++|++||+||||+|.... ..+...+++++|+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 135 WCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp EEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred ccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 7431 223345666777888999999999999985432 2345678899998753
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.80 E-value=5.5e-09 Score=82.92 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=55.4
Q ss_pred CCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEeceeee
Q 046220 30 RKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGH 109 (774)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 109 (774)
+++|||.||++........+ .+.+++. +.++.++|+ .|+||+++|++++++.|+++|+|.+||+|+.++
T Consensus 1 e~~YIV~fK~~~~~~~~~~~----~~~v~~~------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~ 69 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAMSSAKK----KDVISQK------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH 69 (71)
T ss_dssp CEEEEEEECSSSSCCSHHHH----HHHHHTT------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred CCcEEEEECCCCChHHHHHH----HHHHHHc------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEE
Confidence 36899999998654432222 2233332 468999998 799999999999999999999999999999876
Q ss_pred c
Q 046220 110 L 110 (774)
Q Consensus 110 ~ 110 (774)
.
T Consensus 70 a 70 (71)
T d1scjb_ 70 E 70 (71)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.58 E-value=2.2e-08 Score=79.68 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=49.2
Q ss_pred CCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceEEEec-cceeeEEEEeCHHHHHhhcCCCC--eEEEEece
Q 046220 30 RKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHLYTYN-HVVDGFSAVLSQTHLKNLQKMPG--HHGTYLET 106 (774)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~y~-~~~~g~s~~~~~~~~~~L~~~p~--V~~V~~~~ 106 (774)
.++|||.||++........+..++. .. +..+.+.|. +.|+||+++++++.++.|+++|+ |.+||+|.
T Consensus 2 aG~YIVvlK~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 2 AGKFIVIFKNDVSEDKIRETKDEVI----AE------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHH----HH------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CccEEEEECCCCCHHHHHHHHHHHH----hc------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 3799999998764322223333322 22 346677777 68999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.22 E-value=0.021 Score=47.42 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=52.0
Q ss_pred CCCCcEEEEecCCCCceEEEEEEEEecCCCceE-EEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCC
Q 046220 661 LNYPSFIIILNNTNTASFTFKRVLTNVAVTRSV-YTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGND 735 (774)
Q Consensus 661 ln~ps~~~~~~~~~~~~~~~~rtv~n~~~~~~t-y~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~ 735 (774)
+..|++.+.-. ...+++.+|+|.|....+ -++.+..|.|=+++ +....+ ++||+++++++|+.+....
T Consensus 6 ~t~p~~~v~pG----~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~ 74 (103)
T d1w8oa1 6 FTIPDVALEPG----QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTT 74 (103)
T ss_dssp EECCCEEECTT----CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCC
T ss_pred ccCcceeeCCC----CeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCC
Confidence 44567665432 689999999999987654 56888899998875 444566 7999999999999976443
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0068 Score=56.12 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=62.6
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC-------------
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ------------- 440 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~------------- 440 (774)
.+-++||.+.....++-. + ..+++|||+|+ .+|.+.+.+ |..+|+..||.|+|+|.++.+
T Consensus 39 v~g~lVy~n~G~~~Df~~---L-~~~v~GkI~l~--r~G~~~~~~-Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~ 111 (193)
T d1de4c2 39 VTGKLVHANFGTKKDFED---L-YTPVNGSIVIV--RAGKITFAE-KVANAESLNAIGVLIYMDQTKFPIVNAELSFFGH 111 (193)
T ss_dssp EEECEEECSTTCHHHHHT---C-SSCCTTSEEEE--ESCSSCHHH-HHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEE
T ss_pred eeEEEEEccCCCHHHHHH---h-ccccCceEEEE--eCCCCCHHH-HHHHHHHcCceEEEEecCccccCCcCcccccccc
Confidence 455788866544333211 1 35789999999 999999988 999999999999999976110
Q ss_pred -------CCC----------------CCCCcccEEEEccccHHHHHHHHH
Q 046220 441 -------NLF----------------PGDFDMPFVTVNLNNGELVKKYII 467 (774)
Q Consensus 441 -------~~~----------------~~~~~~p~~~i~~~~g~~l~~~~~ 467 (774)
.+. .....||+.-|+..+++.|+..+.
T Consensus 112 ~~~~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 112 AHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CCSSSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred cccCCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 000 012347899999999999988663
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.023 Score=54.13 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=44.9
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD 437 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~ 437 (774)
..+-++||.+.....++-.-.....-+++|||+|+ .+|.+.+.. |..+|+..||+|+|+|++
T Consensus 52 ~v~g~~VyvnyG~~~Df~~L~~~~gi~~~gkIvl~--ryG~~~~~~-Kv~~A~~~GA~GviiysD 113 (233)
T d3bi1a2 52 MPEGDLVYVNYARTEDFFKLERDMKINCSGKIVIA--RYGKVFRGN-KVKNAQLAGAKGVILYSD 113 (233)
T ss_dssp CCEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEE--ECCSSCHHH-HHHHHHHTTCSEEEEECC
T ss_pred ceeEEEEEecCCcHHHHHHHHHhcCCcccceEEEE--eCCCCchhH-HHHHHHHcCceEEEEecC
Confidence 34567888665433332110000134789999999 889888888 999999999999999988
|