Citrus Sinensis ID: 046229

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-

MELVLTIFANSSSVMYSATDFLLKPAFLRVGLLVSWVWKKLKVGVSVCEGSKESVRNNCSGYKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTVGWGAIWVYLQTQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSVISGLFFCYTGFLKKIEGEDTLLLQEPLLDVDSSINNGEVSSIKSEKANIVTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM

cHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccc

cEEEEEEHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccEEEEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHcc

MELVLTIFANSssvmysatdfllkpaFLRVGLLVSWVWKKLKVGVSVcegskesvrnncsgYKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTVGWGAIWVYLQTQffnsgeqkfpfllgLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSVISGLFFCYTGFLKKIegedtlllqeplldvdssinngevssiksekanivtpysnaglFSIVTFSWMGSLIAVgnkkildredvpqldsgdsvmqgfPKFRNVLAADSVVGNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLngeqefkhkgyVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLtlscqakqshtsgeVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNfplgrlqvKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM

MELVLTIFANSSSVMYSATDFLLKPAFLRVGLLVSWVWKKLKVGvsvcegskesvrNNCSGYKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTVGWGAIWVYLQTQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSVISGLFFCYTGFLKKIEGEDTLLLQEPLLDVDSSINNGEvssiksekanivTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDklmkskgkrmkatseilrnmrilklqgwem

MELVLTIFANSSSVMYSATDFLLKPAFLRVGLLVSWVWKKLKVGVSVCEGSKESVRNNCSGYKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTVGWGAIWVYLQTQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHvslpvdyvvsdvvsvisGLFFCYTGFLKKIEGEDTLLLQEPLLDVDSSINNGEVSSIKSEKANIVTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM

**LVLTIFANSSSVMYSATDFLLKPAFLRVGLLVSWVWKKLKVGVSVCEGSKESVRNNCSGYKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTVGWGAIWVYLQTQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSVISGLFFCYTGFLKKIEGEDTLLLQEPLLDVDSSI***********KANIVTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQL***DSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDK******************MRIL*******

*ELV*TIFANSSSVMYSATDFLLKPAFLRVGLLVSWVWKKLKVGVSVC******VRNNCSGYKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTVGWGAIWVYLQTQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSVISGLFFCYTGFLKKIEGEDTLLLQEPLLDVDS********************YSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVL***************VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCL***************INFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM

MELVLTIFANSSSVMYSATDFLLKPAFLRVGLLVSWVWKKLKV*************NNCSGYKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTVGWGAIWVYLQTQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSVISGLFFCYTGFLKKIEGEDTLLLQEPLLDVDSSINNGEVSSIKSEKANIVTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		501	2.2.26 [Sep-21-2011]
Q9LK64		1514	ABC transporter C family	yes	no	0.980	0.324	0.516	1e-131
Q8VZZ4		1466	ABC transporter C family	no	no	0.890	0.304	0.508	1e-125
Q9LK62		1493	ABC transporter C family	no	no	0.874	0.293	0.513	1e-122
Q7GB25		1514	ABC transporter C family	no	no	0.692	0.229	0.403	2e-76
Q9M1C7		1506	ABC transporter C family	no	no	0.694	0.231	0.365	4e-63
Q9LYS2		1453	ABC transporter C family	no	no	0.622	0.214	0.342	3e-49
Q7DM58		1516	ABC transporter C family	no	no	0.562	0.186	0.350	2e-39
Q8LGU1		1464	ABC transporter C family	no	no	0.556	0.190	0.333	3e-39
Q9LZJ5		1539	ABC transporter C family	no	no	0.556	0.181	0.335	1e-38
Q54P13		1593	ABC transporter C family	yes	no	0.556	0.175	0.298	2e-27

>sp\|Q9LK64\|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1	Back alignment and function desciption

 Score =  467 bits (1202), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/511 (51%), Positives = 348/511 (68%), Gaps = 20/511 (3%)

Query: 7   IFANSSSVM-YSATDFLLKPAFLR--------VGLLV---SWVWKKLKVGVSVCEGSKES 54
           +F+ S S++   +  FLLKP FLR        V LLV   SWV KK++    V E  K+ 
Sbjct: 16  LFSFSESILPLDSRSFLLKPLFLRWLSGFLHSVLLLVLFFSWVRKKIRGDSGVTESLKD- 74

Query: 55  VRNNCSGYKLILFCCLGVSAFNLVLSLLNYSFWFKNG-LSEDKLVAFADLVLRTVGWGAI 113
            R +  G+K  LFC L +S  NLVL  L+  +W+++G L  ++LV+    +L  V WG +
Sbjct: 75  -RRDF-GFKSALFCSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVL 132

Query: 114 WVYLQTQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSV 173
            + L  +  +   +K PFLL LW  FYL  SCY LV+D V+     ++PV  +V D+V+ 
Sbjct: 133 SICLH-RCRDCEHKKAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAF 191

Query: 174 ISGLFFCYTGFLKKIEGEDTLLLQEPLLDVDSSINNGE--VSSIKSEKANIVTPYSNAGL 231
           I+ +F  Y   LKK       +L+EPLL+   S   G+  V   K+  +   TPYS AG+
Sbjct: 192 IAAVFLGYVAVLKKDRSNSNGVLEEPLLNGGDSRVGGDDSVELNKTNGSGEATPYSRAGI 251

Query: 232 FSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVL-AADSVVGNRVTTL 290
            S++TFSWM  LI +GNKK LD EDVPQL   DSV+   PKFR++L + D    + VTT 
Sbjct: 252 LSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTF 311

Query: 291 KLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFF 350
           KL+KAL+FTA  EI+ TA  A IYT+A+YVGP LID+FV+YLNG +++ H+GYV+V TFF
Sbjct: 312 KLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFF 371

Query: 351 AAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDA 410
           AAK+VE LS   W FRLQ  GI+MRS LVAM+Y K LTLSCQ+KQ  TSGE+INFMT+DA
Sbjct: 372 AAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDA 431

Query: 411 QRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQ 470
           +R+G+FSW MHD W+VLLQV LA+ IL+++LGLASIA   AT++VML+NFP GR+Q +FQ
Sbjct: 432 ERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQ 491

Query: 471 DKLMKSKGKRMKATSEILRNMRILKLQGWEM 501
           +KLM++K  RMK+TSEILRNMRILKLQGWEM
Sbjct: 492 EKLMEAKDSRMKSTSEILRNMRILKLQGWEM 522

Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4

>sp\|Q8VZZ4\|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3	Back alignment and function description

>sp\|Q9LK62\|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1	Back alignment and function description

>sp\|Q7GB25\|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2	Back alignment and function description

>sp\|Q9M1C7\|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2	Back alignment and function description

>sp\|Q9LYS2\|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2	Back alignment and function description

>sp\|Q7DM58\|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2	Back alignment and function description

>sp\|Q8LGU1\|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3	Back alignment and function description

>sp\|Q9LZJ5\|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1	Back alignment and function description

>sp\|Q54P13\|ABCC8_DICDI ABC transporter C family member 8 OS=Dictyostelium discoideum GN=abcC8 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		501
224061172		1488	multidrug resistance protein ABC transpo	0.964	0.324	0.604	1e-161
359494293		1488	PREDICTED: ABC transporter C family memb	0.954	0.321	0.589	1e-158
359494168		1485	PREDICTED: ABC transporter C family memb	0.956	0.322	0.579	1e-157
147800077		1458	hypothetical protein VITISV_007527 [Viti	0.950	0.326	0.574	1e-154
356501620		1493	PREDICTED: ABC transporter C family memb	0.958	0.321	0.555	1e-151
356499431		2054	PREDICTED: ABC transporter C family memb	0.958	0.233	0.555	1e-150
359494291		2021	PREDICTED: ABC transporter C family memb	0.954	0.236	0.567	1e-149
356553519		1494	PREDICTED: ABC transporter C family memb	0.946	0.317	0.560	1e-149
359494289		1488	PREDICTED: ABC transporter C family memb	0.954	0.321	0.567	1e-149
224072869		1305	multidrug resistance protein ABC transpo	0.944	0.362	0.552	1e-144

>gi\|224061172\|ref\|XP_002300362.1\| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi\|222847620\|gb\|EEE85167.1\| multidrug resistance protein ABC transporter family [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 302/500 (60%), Positives = 372/500 (74%), Gaps = 17/500 (3%)

Query: 15  MYSATDFLLKPAFLR-----------VGLLVSWVWKKLKVGVSVCEGSKESVRNNCSG-- 61
           M SAT FLLKP FLR           + L VS+V KKL+VG  V +GSKE   NN     
Sbjct: 1   MDSATYFLLKPIFLRGFTASLHLVLLLALFVSFVLKKLRVGDGV-QGSKERFSNNKRFFF 59

Query: 62  YKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTVGWGAIWVYLQTQF 121
           YK  LFC LGVS+ NLVLSL++Y +W+ NG S+DKLV   D VL  + W A+ VYL TQ 
Sbjct: 60  YKQTLFCSLGVSSLNLVLSLVSYFYWYTNGWSDDKLVTLLDFVLTALSWAALSVYLHTQL 119

Query: 122 FNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSVISGLFFCY 181
           FNSGE KFPFLL +WW  +   SCYCLV+D ++   H S  + Y+VSD+VSV +  F CY
Sbjct: 120 FNSGETKFPFLLRVWWALFFSISCYCLVVDFLVFHKHGSFEIQYLVSDLVSVFTAFFLCY 179

Query: 182 TGFLKKIEGEDTLLLQEPLLDVDSSINNGEVSSIKSEKANIVTPYSNAGLFSIVTFSWMG 241
            GFL+  E +DTLL ++PLL+ DSS  NG  SS KS   + +TPY+NAGLFSI+TFSWMG
Sbjct: 180 VGFLRN-ECQDTLL-EQPLLNGDSSSINGLESS-KSRGGDSLTPYANAGLFSILTFSWMG 236

Query: 242 SLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTAW 301
           SLIA GNKK LD EDVPQL S DSV+  F  F+N L +DS   +RVT  KL+KAL  +AW
Sbjct: 237 SLIAFGNKKTLDLEDVPQLHSVDSVVGAFSVFKNKLESDSGAASRVTAFKLLKALLLSAW 296

Query: 302 KEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFT 361
           KEI+ TA+LA+IYT A+YVGPYLIDSFV+ L+G  E+K++GY++ STFF AK+VE LS  
Sbjct: 297 KEILLTALLAIIYTSASYVGPYLIDSFVQCLDGRGEYKNQGYILASTFFVAKVVECLSQR 356

Query: 362 QWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMH 421
            W FRLQ  GI++R+V   M+YNK LTLS Q+KQ  TSGE+IN MT+DA+R+ DFSW MH
Sbjct: 357 HWFFRLQQIGIRLRAVATTMIYNKALTLSSQSKQGQTSGEIINIMTVDAERISDFSWYMH 416

Query: 422 DSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRM 481
           D WLV+LQV LA+LIL+K+LGLA+++TF AT++VML+N+PLGRLQ  FQDKLM+SK KRM
Sbjct: 417 DPWLVILQVGLALLILYKNLGLATVSTFVATIVVMLLNYPLGRLQEHFQDKLMESKDKRM 476

Query: 482 KATSEILRNMRILKLQGWEM 501
           KAT+EILRNMRILKLQGWEM
Sbjct: 477 KATTEILRNMRILKLQGWEM 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359494293\|ref\|XP_003634755.1\| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359494168\|ref\|XP_002265605.2\| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147800077\|emb\|CAN75340.1\| hypothetical protein VITISV_007527 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356501620\|ref\|XP_003519622.1\| PREDICTED: ABC transporter C family member 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356499431\|ref\|XP_003518544.1\| PREDICTED: ABC transporter C family member 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|359494291\|ref\|XP_003634754.1\| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356553519\|ref\|XP_003545103.1\| PREDICTED: ABC transporter C family member 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|359494289\|ref\|XP_003634753.1\| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224072869\|ref\|XP_002303920.1\| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi\|222841352\|gb\|EEE78899.1\| multidrug resistance protein ABC transporter family [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		501
TAIR\|locus:2090029		1514	ABCC3 "ATP-binding cassette C3	0.978	0.323	0.505	5.8e-121
TAIR\|locus:2090049		1493	ABCC7 "ATP-binding cassette C7	0.928	0.311	0.493	1.7e-114
TAIR\|locus:2090039		1466	ABCC6 "ATP-binding cassette C6	0.780	0.266	0.522	6.5e-104
TAIR\|locus:2020235		1514	ABCC5 "ATP-binding cassette C5	0.866	0.286	0.373	1.2e-71
TAIR\|locus:2077750		1453	ABCC10 "ATP-binding cassette C	0.630	0.217	0.341	9.3e-48
TAIR\|locus:2043268		1516	ABCC4 "ATP-binding cassette C4	0.562	0.186	0.350	1e-39
TAIR\|locus:2081755		1539	ABCC14 "ATP-binding cassette C	0.554	0.180	0.348	8.5e-38
DICTYBASE\|DDB_G0284867		1593	abcC8 "ABC transporter C famil	0.584	0.183	0.301	2.9e-28
UNIPROTKB\|F1PHV0		1544	ABCC2 "Uncharacterized protein	0.417	0.135	0.325	2.1e-27
UNIPROTKB\|Q92887		1545	ABCC2 "Canalicular multispecif	0.415	0.134	0.342	3.8e-27

TAIR\|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 259/512 (50%), Positives = 337/512 (65%)

Query:     7 IFANSSSVM-YSATDFLLKPAFLR--------VGLLV---SWVWKKLKVGVSVCEGSKES 54
             +F+ S S++   +  FLLKP FLR        V LLV   SWV KK++    V E  K+ 
Sbjct:    16 LFSFSESILPLDSRSFLLKPLFLRWLSGFLHSVLLLVLFFSWVRKKIRGDSGVTESLKD- 74

Query:    55 VRNNCSGYKLILFCCLGVSAFNLVLSLLNYSFWFKNG-LSEDKLVAFADLVLRTVGWGAI 113
              R +  G+K  LFC L +S  NLVL  L+  +W+++G L  ++LV+    +L  V WG +
Sbjct:    75 -RRDF-GFKSALFCSLALSLLNLVLMSLSGFYWYESGWLDNEQLVSSLGFLLGMVSWGVL 132

Query:   114 WVYLQTQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHXXXXXXXXXXXXXXX 173
              + L  +  +   +K PFLL LW  FYL  SCY LV+D V+                   
Sbjct:   133 SICLH-RCRDCEHKKAPFLLRLWLVFYLVVSCYSLVVDFVMYERRETVPVHLLVFDIVAF 191

Query:   174 XXGLFFCYTGFLKKIEGEDTLLLQEPLLDVDSSINNGEVSSIKSEKAN---IVTPYSNAG 230
                +F  Y   LKK       +L+EPLL+   S   G+  S++  K N     TPYS AG
Sbjct:   192 IAAVFLGYVAVLKKDRSNSNGVLEEPLLNGGDSRVGGD-DSVELNKTNGSGEATPYSRAG 250

Query:   231 LFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAA-DSVVGNRVTT 289
             + S++TFSWM  LI +GNKK LD EDVPQL   DSV+   PKFR++L + D    + VTT
Sbjct:   251 ILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTT 310

Query:   290 LKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTF 349
              KL+KAL+FTA  EI+ TA  A IYT+A+YVGP LID+FV+YLNG +++ H+GYV+V TF
Sbjct:   311 FKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITF 370

Query:   350 FAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTID 409
             FAAK+VE LS   W FRLQ  GI+MRS LVAM+Y K LTLSCQ+KQ  TSGE+INFMT+D
Sbjct:   371 FAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVD 430

Query:   410 AQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKF 469
             A+R+G+FSW MHD W+VLLQV LA+ IL+++LGLASIA   AT++VML+NFP GR+Q +F
Sbjct:   431 AERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERF 490

Query:   470 QDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501
             Q+KLM++K  RMK+TSEILRNMRILKLQGWEM
Sbjct:   491 QEKLMEAKDSRMKSTSEILRNMRILKLQGWEM 522

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0010290 "chlorophyll catabolite transmembrane transporter activity" evidence=IDA

GO:0015431 "glutathione S-conjugate-exporting ATPase activity" evidence=IDA

TAIR\|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92887 ABCC2 "Canalicular multispecific organic anion transporter 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		501
TIGR00957		1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-27
PLN03232		1495	PLN03232, PLN03232, ABC transporter C family membe	5e-25
PLN03130		1622	PLN03130, PLN03130, ABC transporter C family membe	6e-25
PTZ00243		1560	PTZ00243, PTZ00243, ABC transporter; Provisional	7e-21
pfam00664		274	pfam00664, ABC_membrane, ABC transporter transmemb	1e-14
TIGR01271		1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	2e-14
COG1132		567	COG1132, MdlB, ABC-type multidrug transport system	4e-07

>gnl\|CDD\|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)	Back alignment and domain information

 Score =  117 bits (294), Expect = 1e-27
 Identities = 77/314 (24%), Positives = 143/314 (45%), Gaps = 37/314 (11%)

Query: 225 PYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQ---------------- 268
           P S+A   S +TF W+  +   G ++ L+  D+  L+  D+                   
Sbjct: 203 PESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKT 262

Query: 269 --------------GFPKFRNVLAADSVVG-------NRVTTLKLVKALFFTAWKEIVFT 307
                           PK  + L A+  V        ++     L K L+ T     + +
Sbjct: 263 RKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMS 322

Query: 308 AVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRL 367
                I+ L  ++GP ++   ++++N       +GY      F    +++L   Q+    
Sbjct: 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHIC 382

Query: 368 QVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVL 427
            V+G+++++ ++  VY K L ++  A++S T GE++N M++DAQR  D +  ++  W   
Sbjct: 383 FVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAP 442

Query: 428 LQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEI 487
           LQV LA+  L  +LG + +A  +  VL++ +N  +      +Q   MKSK  R+K  +EI
Sbjct: 443 LQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEI 502

Query: 488 LRNMRILKLQGWEM 501
           L  +++LKL  WE+
Sbjct: 503 LNGIKVLKLYAWEL 516

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl\|CDD\|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional	Back alignment and domain information

>gnl\|CDD\|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional	Back alignment and domain information

>gnl\|CDD\|240327 PTZ00243, PTZ00243, ABC transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region	Back alignment and domain information

>gnl\|CDD\|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>gnl\|CDD\|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		501
KOG0054		1381	consensus Multidrug resistance-associated protein/	100.0
PLN03130		1622	ABC transporter C family member; Provisional	100.0
PLN03232		1495	ABC transporter C family member; Provisional	100.0
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PTZ00243		1560	ABC transporter; Provisional	100.0
PF00664		275	ABC_membrane: ABC transporter transmembrane region	99.81
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	99.79
KOG0058		716	consensus Peptide exporter, ABC superfamily [Intra	99.76
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.72
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.72
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	99.72
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.71
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	99.69
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.68
TIGR00958		711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.68
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	99.67
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	99.67
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	99.66
TIGR01192		585	chvA glucan exporter ATP-binding protein. This mod	99.65
TIGR02203		571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.63
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	99.62
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.62
TIGR01194		555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.59
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	99.59
PRK10790		592	putative multidrug transporter membrane\ATP-bindin	99.58
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.56
PRK10522		547	multidrug transporter membrane component/ATP-bindi	99.54
TIGR01842		544	type_I_sec_PrtD type I secretion system ABC transp	99.53
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.52
COG1132		567	MdlB ABC-type multidrug transport system, ATPase a	99.46
TIGR00954		659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.44
PTZ00265		1466	multidrug resistance protein (mdr1); Provisional	99.41
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	99.34
KOG0055		1228	consensus Multidrug/pheromone exporter, ABC superf	99.34
PLN03130		1622	ABC transporter C family member; Provisional	99.32
COG4988		559	CydD ABC-type transport system involved in cytochr	99.26
PLN03232		1495	ABC transporter C family member; Provisional	99.19
PTZ00243		1560	ABC transporter; Provisional	99.14
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	99.1
COG4987		573	CydC ABC-type transport system involved in cytochr	99.03
PF13748		237	ABC_membrane_3: ABC transporter transmembrane regi	98.92
KOG0054		1381	consensus Multidrug resistance-associated protein/	98.87
KOG0057		591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.84
KOG0055		1228	consensus Multidrug/pheromone exporter, ABC superf	98.79
COG4615		546	PvdE ABC-type siderophore export system, fused ATP	98.52
COG4618		580	ArpD ABC-type protease/lipase transport system, AT	98.41
PF06472		281	ABC_membrane_2: ABC transporter transmembrane regi	98.4
KOG0056		790	consensus Heavy metal exporter HMT1, ABC superfami	98.0
PRK12369		326	putative transporter; Reviewed	97.14
COG5265		497	ATM1 ABC-type transport system involved in Fe-S cl	97.02
COG4178		604	ABC-type uncharacterized transport system, permeas	96.7
PRK11098		409	microcin B17 transporter; Reviewed	96.66
KOG0060		659	consensus Long-chain acyl-CoA transporter, ABC sup	96.6
TIGR00958		711	3a01208 Conjugate Transporter-2 (CT2) Family prote	95.33
TIGR00954		659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	95.05
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	94.95
TIGR01842		544	type_I_sec_PrtD type I secretion system ABC transp	94.84
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	93.5
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	92.27
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	92.22
PF00664		275	ABC_membrane: ABC transporter transmembrane region	91.95
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	91.77
TIGR02204		576	MsbA_rel ABC transporter, permease/ATP-binding pro	91.15
KOG0064		728	consensus Peroxisomal long-chain acyl-CoA transpor	90.93
COG4988		559	CydD ABC-type transport system involved in cytochr	90.8
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	89.91
TIGR02203		571	MsbA_lipidA lipid A export permease/ATP-binding pr	89.8
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	88.95
PRK10790		592	putative multidrug transporter membrane\ATP-bindin	88.36
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	86.95
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	86.24
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	85.87
TIGR01194		555	cyc_pep_trnsptr cyclic peptide transporter. This m	85.83
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	85.77
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	80.29

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Probab=100.00  E-value=8.3e-47  Score=428.15  Aligned_cols=277  Identities=31%  Similarity=0.518  Sum_probs=263.1

Q ss_pred             CCCCCcCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhhhcCCCCCcchHHHHHHHHH
Q 046229          223 VTPYSNAGL--FSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTA  300 (501)
Q Consensus       223 ~~p~~~a~~--~s~ltFsW~~pll~~g~k~~L~~~Dlp~l~~~~~a~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~  300 (501)
                      .+|.++++.  +|++||+|++|++++|+|++|+.+|+|+++++|+++.++++|++.|+++.++.  .++|+++++++++|
T Consensus       122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~--~~~psl~~al~~~f  199 (1381)
T KOG0054|consen  122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS--GKKPSLLRALLRTF  199 (1381)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc--cCCcHHHHHHHHHH
Confidence            345555555  99999999999999999999999999999999999999999999999876322  25789999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229          301 WKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVA  380 (501)
Q Consensus       301 ~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~  380 (501)
                      |+.++..+++..+.+.+.+++|.+++.+++++++++...+.++.++++++++.++++++.+++++...+.|+|+|.++.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~  279 (1381)
T KOG0054|consen  200 GRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS  279 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence            99999999999999999999999999999999887656678999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046229          381 MVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNF  460 (501)
Q Consensus       381 ~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~  460 (501)
                      +||+|+|+++...++++++|+|+|+|++|++++.++..++|.+|..|+|+++++++||..+|+++++|++++++++|+|.
T Consensus       280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~  359 (1381)
T KOG0054|consen  280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNS  359 (1381)
T ss_pred             HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229          461 PLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM  501 (501)
Q Consensus       461 ~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~  501 (501)
                      +++|+++++|++.|+.+|+|++.++|+|+|||+||+||||+
T Consensus       360 ~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~  400 (1381)
T KOG0054|consen  360 FLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEK  400 (1381)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHH
Confidence            99999999999999999999999999999999999999995

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>TIGR01192 chvA glucan exporter ATP-binding protein	Back alignment and domain information

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional	Back alignment and domain information

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei	Back alignment and domain information

>PTZ00265 multidrug resistance protein (mdr1); Provisional	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13748 ABC_membrane_3: ABC transporter transmembrane region	Back alignment and domain information

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	Back alignment and domain information

>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK12369 putative transporter; Reviewed	Back alignment and domain information

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	Back alignment and domain information

>PRK11098 microcin B17 transporter; Reviewed	Back alignment and domain information

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]	Back alignment and domain information

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein	Back alignment and domain information

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein	Back alignment and domain information

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]	Back alignment and domain information

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		501
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3b5x_A		582	Lipid A export ATP-binding/permease protein MSBA;	7e-05
3b60_A		582	Lipid A export ATP-binding/permease protein MSBA;	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 68/495 (13%), Positives = 130/495 (26%), Gaps = 168/495 (33%)

Query: 3   LVLTIFANSSSVMYSATDFLLKPAFLRVGLLVSWVWKKLKV---GVSVCEGSKESVRNNC 59
           L  T+ +    ++    + +L+  +        ++   +K      S+        R+  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 60  SGYKLILFCCLGVSAFNLVLSLLNYSFWFKNGLSEDKLVAFADLVLRTV-GWGAIWVYLQ 118
                 +F    VS     L L       +  L E +      +++  V G G  WV L 
Sbjct: 120 YN-DNQVFAKYNVSRLQPYLKL-------RQALLELRPAKN--VLIDGVLGSGKTWVALD 169

Query: 119 TQFFNSGEQKFPFLLGLWWGFYLCFSCYCLVIDIVLCTMHVSLPVDYVVSDVVSVISGLF 178
                  + K  F   ++W            +++  C    ++                 
Sbjct: 170 VCLSYKVQCKMDF--KIFW------------LNLKNCNSPETV----------------- 198

Query: 179 FCYTGFLKKIEGEDTLLLQ-----EPLLDVDSSINNGEVSSIKSEKANIVT--PYSNAGL 231
                    +E    LL Q         D  S+I    + SI++E   ++   PY N   
Sbjct: 199 ---------LEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYEN--- 245

Query: 232 FSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKF--------RNVLAADSVV 283
                      L+      +L   +V            F           R     D + 
Sbjct: 246 ----------CLL------VLL--NV----QNAKAWNAF-NLSCKILLTTRFKQVTDFLS 282

Query: 284 GNRVTTLKLVKALFFTAWKEIVFTA--VLALIYTLANYVG--------------PYLIDS 327
               T + L           +  T   V +L   L  Y+               P  +  
Sbjct: 283 AATTTHISLDH-------HSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 328 FVKYLNGE----QEFKHKGYVMVSTFFAAKLVESLSFTQW--------IFR------LQV 369
             + +         +KH     ++T   + L   L   ++        +F         +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 370 AGI---KMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLV 426
             +    +    V +V NK    S   KQ                   + +  +   +L 
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-----------------ESTISIPSIYLE 434

Query: 427 LLQVSLAMLILHKSL 441
           L         LH+S+
Sbjct: 435 LKVKLENEYALHRSI 449

PyMOL of 1vt4

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582	Back alignment and structure

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		501
3qf4_A		587	ABC transporter, ATP-binding protein; multidrug tr	99.77
3qf4_B		598	Uncharacterized ABC transporter ATP-binding prote	99.77
4a82_A		578	Cystic fibrosis transmembrane conductance regulat;	99.77
3b5x_A		582	Lipid A export ATP-binding/permease protein MSBA;	99.75
4f4c_A		1321	Multidrug resistance protein PGP-1; ABC transporte	99.74
3b60_A		582	Lipid A export ATP-binding/permease protein MSBA;	99.74
2yl4_A		595	ATP-binding cassette SUB-family B member 10, mitoc	99.73
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.58
4f4c_A		1321	Multidrug resistance protein PGP-1; ABC transporte	99.39
3g5u_A		1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.29
3qf4_A		587	ABC transporter, ATP-binding protein; multidrug tr	93.52
3qf4_B		598	Uncharacterized ABC transporter ATP-binding prote	93.09
3b5x_A		582	Lipid A export ATP-binding/permease protein MSBA;	92.27
3b60_A		582	Lipid A export ATP-binding/permease protein MSBA;	90.54
2yl4_A		595	ATP-binding cassette SUB-family B member 10, mitoc	90.46
4a82_A		578	Cystic fibrosis transmembrane conductance regulat;	85.18

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

Probab=99.77  E-value=1.9e-17  Score=180.05  Aligned_cols=210  Identities=12%  Similarity=0.051  Sum_probs=179.8

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229          291 KLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVA  370 (501)
Q Consensus       291 ~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l  370 (501)
                      +.++.+++.+++.++...++.++..++..+.|++++.++|...... +....+.++..+++..++..++.....+...+.
T Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (587)
T 3qf4_A           12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG-DFSLVLKTGILMLIVALIGAVGGIGCTVFASYA   90 (587)
T ss_dssp             CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678889999999999999999999999999999999865432 222334445555555666677777777888889


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046229          371 GIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATF  449 (501)
Q Consensus       371 ~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl  449 (501)
                      +.++...++..+|+|+++++..+++++++|+++|++++|++++++++. .+..++..++.+++++++++...+..+++.+
T Consensus        91 ~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l  170 (587)
T 3qf4_A           91 SQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLI  170 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887 5566777888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229          450 SATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM  501 (501)
Q Consensus       450 ~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~  501 (501)
                      ++++++.++...+.|+.++..++.++..+++.+.++|.++||++||.|++|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~  222 (587)
T 3qf4_A          171 FLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREE  222 (587)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Confidence            8888888888899999999999999999999999999999999999999984

PyMOL of 3qf4

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A	Back alignment and structure

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}	Back alignment and structure

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}	Back alignment and structure

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*	Back alignment and structure

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}	Back alignment and structure

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*	Back alignment and structure

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}	Back alignment and structure

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}	Back alignment and structure

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A	Back alignment and structure

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		501
d3b60a2		319	Multidrug resistance ABC transporter MsbA, N-termi	99.8
d2hyda2		323	Putative multidrug export ATP-binding/permease pro	99.79
d3b60a2		319	Multidrug resistance ABC transporter MsbA, N-termi	96.42
d2hyda2		323	Putative multidrug export ATP-binding/permease pro	91.09

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=4.7e-18  Score=165.51  Aligned_cols=208  Identities=7%  Similarity=0.045  Sum_probs=183.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229          293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGI  372 (501)
Q Consensus       293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~  372 (501)
                      ++.+.++|++.++...++.++..++....|++++.++|....++ +....+.+++++++..++..++.....+...+.+.
T Consensus         7 l~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   85 (319)
T d3b60a2           7 LWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSG   85 (319)
T ss_dssp             HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence            44567889999999999999999999999999999999765433 22334445556666677888888889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229          373 KMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSA  451 (501)
Q Consensus       373 rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~  451 (501)
                      ++...++..+|+|.++++.++++++++|++++++++|++.+.+... .........+.+++++++++...+..+++.++.
T Consensus        86 ~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~  165 (319)
T d3b60a2          86 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL  165 (319)
T ss_dssp             HHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred             ccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchhhhhhH
Confidence            9999999999999999999999999999999999999999999886 566777888888999999999888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229          452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM  501 (501)
Q Consensus       452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~  501 (501)
                      +++...+.....++.++..++.++..++..+.++|.++|+++||.+++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~  215 (319)
T d3b60a2         166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE  215 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccc
Confidence            88899999999999999999999999999999999999999999999874

PyMOL of d3b60a2

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure